Citrus Sinensis ID: 001295

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------
Protein Sequence
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHcccHHHHHHHHHHHcccccEEEcHHHHHHHccccHHHHHHHccccEEEccccEEEEEEEEEEHHHHHHHHccccHHHHHHHHHHcccccccccHHHHHHHHHHccccccccHHHHHccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccEEcEEEEEEcccccEEEccccccccccccccccEEEEccccccEEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEEEEEEEcccccccccccccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEccEEEEcccccEEEEEEcccccEEEEEEEcccccEEEEEcccccEEEEcccccccEEEEEccccccccEEEEEEccccEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEEcccccccccEEEEcccccEEEEEEccccEEEEEcccccEEEEEEccccccEEEEEEEEcccccEEEEEEccccEEEccccccccccccccccccEEEEEEccccEEEEEcccccEEEEEEcccccEEEEEccccccccccEEEEEEcccccEEEEEEcccEEEEEEEcccccccccccccccccEEEEcccccEEEcccccccccccEEEEEEcccccEEEEEEcccEEEEEccccEEEEEEccccccEEEEEEccccccEEEEEEccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEcccccccccEEEEcccccccccccccEEEEcccccEEEEEEcccEEEEEcccccEEEEEccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEcccccccccccccccccEEEEEccccccEEEEEEccccEEEEccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccEEcHHHHHHHHHcccHHHHHHHHccccEcccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcHHHHHHccccccccccHHHHHHHcccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccHHHHccccccccccccccccccHHHHHHHccccccccccccEEEEEEccccccEEEccccccEEEEEcccccEEEEccccccEEEEEEcccccEEEEEEccccEEEEEEEccccEEEEEEEEEEEcccccccHHHHHcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEEEccccccEEEEEEcccccEEEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEEcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEcccccccccccccEEEEEEccccccHHHHHHHccccccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEccccccccccEEEEEEcccccEEEEEcccEEEEEEcccccEEEEEccccccEEEEEEccccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEccccccccccEEEEccccccccccEEEEEEcccccEEEEEcccEEEEEEcccccEEEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccccccccccccEEEEEEEcccccEEEEEccccEEEEEEccccccEEEEcccccccEEEEEcccccccccccccccc
Coil and Loop (DISEMBL)
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFedevhngnwdDVEKYLSGftkvddnrysmKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENfreneqlskygdtksARSIMLVELKKLieanplfrdklqfpnlknsslnwqhqlcknprpnpdiktlfvdhtcgqpngarapspannpllgslpkagvfpplgahgpfqptpapvptplagwmsnpptvthpavsggaiglgspsipaaalkhprtpptnpsvdypsgdsdhlskrtrpigisdeinlpvnvlpvsftghshshshsqafstpedlpktvtrtlnqgsspmsmdfhpVQQTLLLVGtnvgdiglwevgsrerlvlrnfkvwdlgacsmplqaalvkdpgvsvnrviwspdgslfgvAYSRHIVQIYSyhggdevrQHLEidahvggvndiafshpnkqlcvitcgddktiKVWDATngakqyifegheapvysvcphhkeNIQFIFSTALDGKIKAWLYDnlgsrvdyeapgrwcttmaysadgtrtyqgfrkrslgvvqfdttknrflaagddfsikfwDMDSVQLLTSIdadgglpasprirfnkdgclLAVSTNDNGIKILATSDGIRLLRTFENLAydasrtsenskptisPISAAAAAAATSAGLADRAAsmvsipgmngdvrsladvkpriteesndkSKVWKLtelsepnqcrslrlpenlrATKISRLIFTNSGNAILALASNAIHLLWKWQrternssgkatasvapqlwqppsgimmtndvtdsnpeeavpcfalskndsyvmsasggkislfnmmtfktmatfmppppaatflafhpqdnniiaigmddssiqIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVssgadsqlcvwssdgwekqknrflqiptgrtptaqsdtrvqfhQDQIHFLVVHETQLAIFETTKLEcvkqwvpressapithatfscdsqLVYACFLDATVCVFSAANLKLrcrinpsaylpagvsssnvhplviaahpqepnefalglsdggvhvfeplesegkwgvpppvdngstssmpatppvggsgsdqaqr
Flexible Loop (DISEMBL)
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGftkvddnrysMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENeqlskygdtksaRSIMLVELKKLIEANPLFRDKLQFPNLKNSSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSqafstpedlpkTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGsrvdyeapgrwCTTMAYSADGTRTYQGFRKrslgvvqfdttKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYdasrtsenskptiSPISAAAAAAATSAGLADRAASMvsipgmngdvrsladvkpriteesndkskvwkltelsepnqcrslrlpeNLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNssgkatasvapqlwqppsgIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGstssmpatppvggsgsdqaqr
Low Complexity Region (SEG)
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGpfqptpapvptpLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGhshshshsQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPIsaaaaaaatsagladraasMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNmmtfktmatfmppppaatflafHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR
Disordered region (IsUnstruct)
******ELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSSLNWQHQLCKN*****DIKTLFVDHTC***************************************************************************************************************EINLPVNVLPVSF*************************************FHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY********************************************************************************LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQR**************************************VPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP**********TRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHP***NEFALGLSDGGVHVFE**************************************
Disordered Region (DISOPRED)
****SRE*VFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQP***********WMS*******************************TPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWG*****************************
Disordered Region (DISEMBL)
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFT****************DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDA**********ISPIS**************RAASMVSIPGMNGDVRSLADVKPRI********KVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRT************APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSM****************
Disordered Region (DISPRO)
**SLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVPTPLAGWMSNPPTVTH******AIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPAT*************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1106	2.2.26 [Sep-21-2011]
Q94AI7	1131	Protein TOPLESS OS=Arabid	yes	no	0.991	0.969	0.822	0.0
Q0WV90	1120	Topless-related protein 1	no	no	0.981	0.969	0.807	0.0
Q27GK7	1135	Topless-related protein 4	no	no	0.989	0.963	0.675	0.0
Q9LRZ0	1131	Topless-related protein 2	no	no	0.952	0.931	0.611	0.0
Q84JM4	1108	Topless-related protein 3	no	no	0.954	0.953	0.589	0.0
Q00808	1356	Vegetative incompatibilit	yes	no	0.244	0.199	0.292	3e-18
Q8YRI1	1526	Uncharacterized WD repeat	no	no	0.422	0.306	0.224	7e-15
Q54KL5	335	WD repeat-containing prot	yes	no	0.187	0.617	0.254	4e-13
Q8YV57	1683	Uncharacterized WD repeat	no	no	0.388	0.255	0.219	2e-11
Q8YTC2	1258	Uncharacterized WD repeat	no	no	0.428	0.376	0.209	2e-11

>sp|Q94AI7|TPL_ARATH Protein TOPLESS OS=Arabidopsis thaliana GN=TPL PE=1 SV=1

 Score = 1940 bits (5026), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 938/1140 (82%), Positives = 1019/1140 (89%), Gaps = 43/1140 (3%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDKHDR KAV+ILVKDLKVFSTFNEELFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNS--------SLN 172
            LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFP L+NS        SLN
Sbjct: 121  LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSLN 180

Query: 173  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 232
            WQHQLCKNPRPNPDIKTLFVDH+CG PNGARAPSP NNPLLG +PKAG FPPLGAHGPFQ
Sbjct: 181  WQHQLCKNPRPNPDIKTLFVDHSCGPPNGARAPSPVNNPLLGGIPKAGGFPPLGAHGPFQ 240

Query: 233  PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGD 292
            PT +PVPTPLAGWMS+P +V HPAVS GAI LG PSIPAA LKHPRTPPTN S+DYPS D
Sbjct: 241  PTASPVPTPLAGWMSSPSSVPHPAVSAGAIALGGPSIPAA-LKHPRTPPTNASLDYPSAD 299

Query: 293  SDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSS 352
            S+H+SKRTRP+GISDE+NL VN+LP+SF+G +H HS   AF  P+DLPKTV RTL+QGSS
Sbjct: 300  SEHVSKRTRPMGISDEVNLGVNMLPMSFSGQAHGHS--PAFKAPDDLPKTVARTLSQGSS 357

Query: 353  PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 412
            PMSMDFHP++QTLLLVGTNVGDIGLWEVGSRERLV + FKVWDL  CSMPLQAALVK+P 
Sbjct: 358  PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417

Query: 413  VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 472
            VSVNRVIWSPDGSLFGVAYSRHIVQ+YSYHGG+++RQHLEIDAHVGGVNDI+FS PNKQL
Sbjct: 418  VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNKQL 477

Query: 473  CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 532
            CVITCGDDKTIKVWDA  G K++ FEGHEAPVYSVCPH+KENIQFIFSTALDGKIKAWLY
Sbjct: 478  CVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLY 537

Query: 533  DNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQGFRK 566
            DN+GSRVDY+APGRWCTTMAYSADGTR                          TYQGF K
Sbjct: 538  DNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHK 597

Query: 567  RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA 626
            RSLGVVQFDTTKNR+LAAGDDFSIKFWDMD+VQLLT+ID DGGL ASPRIRFNK+G LLA
Sbjct: 598  RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASPRIRFNKEGSLLA 657

Query: 627  VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADR 686
            VS N+N IKI+A SDG+RLL TFEN+      +SE+SKP I+ I+AAAAAAATSAG ADR
Sbjct: 658  VSGNENVIKIMANSDGLRLLHTFENI------SSESSKPAINSIAAAAAAAATSAGHADR 711

Query: 687  AASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 746
            +A++VSI GMNGD R++ DVKP ITEESNDKSK+WKLTE+SEP+QCRSLRLPENLR  KI
Sbjct: 712  SANVVSIQGMNGDSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLPENLRVAKI 771

Query: 747  SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 806
            SRLIFTNSGNAILALASNAIHLLWKWQR ERN++GKATAS+ PQ WQP SGI+MTNDV +
Sbjct: 772  SRLIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASGILMTNDVAE 831

Query: 807  SNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI 866
            +NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI
Sbjct: 832  TNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI 891

Query: 867  IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 926
            IAIGMDDS+IQIYNVRVDEVKSKLKGHSKRITGLAFS+ LNVLVSSGAD+QLCVW++DGW
Sbjct: 892  IAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDGW 951

Query: 927  EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRES 986
            EKQ+++ L +P GR  +A SDTRVQFHQDQ HFLVVHETQLAI+ETTKLEC+KQW  RES
Sbjct: 952  EKQRSKVLPLPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLECMKQWAVRES 1011

Query: 987  SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIA 1046
             APITHATFSCDSQLVYA F+DATVCVFS+ANL+LRCR+NPSAYLPA +S+SNVHPLVIA
Sbjct: 1012 LAPITHATFSCDSQLVYASFMDATVCVFSSANLRLRCRVNPSAYLPASLSNSNVHPLVIA 1071

Query: 1047 AHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR 1106
            AHPQEPN FA+GLSDGGVH+FEPLESEGKWGV PP +NGS S  P  P VG S SDQ QR
Sbjct: 1072 AHPQEPNMFAVGLSDGGVHIFEPLESEGKWGVAPPAENGSASGAPTAPSVGASASDQPQR 1131

Transcriptional corepressor. May repress the expression of root-promoting genes in the top half of the embryo to allow proper differentiation of the shoot pole during the transition stage of embryogenesis. Regulates the expression of PLT1 and PLT2. Negative regulator of jasmonate responses. Negative regulator of auxin responses.
Arabidopsis thaliana (taxid: 3702)

>sp|Q0WV90|TPR1_ARATH Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 PE=1 SV=3

 Score = 1923 bits (4982), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 921/1140 (80%), Positives = 1009/1140 (88%), Gaps = 54/1140 (4%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALD+HDR KAV+ILVKDLKVFSTFNEELFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLK--------NSSLN 172
            LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFP L+        N SLN
Sbjct: 121  LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTSRLRTLINQSLN 180

Query: 173  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 232
            WQHQLCKNPRPNPDIKTLFVDH+C  PN ARAPSP NNPLLGSLPKA  FPPLGAHGPFQ
Sbjct: 181  WQHQLCKNPRPNPDIKTLFVDHSCRLPNDARAPSPVNNPLLGSLPKAEGFPPLGAHGPFQ 240

Query: 233  PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGD 292
            PTP+PVPTPLAGWMS+P +V HPAVSGG I LG+PSI  AALKHPRTPP+N +VDYPSGD
Sbjct: 241  PTPSPVPTPLAGWMSSPSSVPHPAVSGGPIALGAPSI-QAALKHPRTPPSNSAVDYPSGD 299

Query: 293  SDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSS 352
            SDH+SKRTRP+GISDE++L VN+LP++F G +H H+  Q F  P+DLPKTV RTL+QGSS
Sbjct: 300  SDHVSKRTRPMGISDEVSLGVNMLPMTFPGQAHGHN--QTFKAPDDLPKTVARTLSQGSS 357

Query: 353  PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 412
            PMSMDFHP++QTLLLVGTNVGDIGLWEVGSRERLV + FKVWDL  CSMPLQAALVK+P 
Sbjct: 358  PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417

Query: 413  VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 472
            VSVNRVIWSPDGSLFGVAYSRHIVQ+YSYHGG+++RQHLEIDAHVGGVNDIAFS PNKQL
Sbjct: 418  VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDIAFSTPNKQL 477

Query: 473  CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 532
            CV TCGDDKTIKVWDA  G K+Y FEGHEAPVYS+CPH+KENIQFIFSTALDGKIKAWLY
Sbjct: 478  CVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWLY 537

Query: 533  DNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQGFRK 566
            DN+GSRVDYEAPGRWCTTMAYSADGTR                          TYQGF K
Sbjct: 538  DNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHK 597

Query: 567  RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA 626
            RSLGVVQFDTTKNR+LAAGDDFSIKFWDMD++QLLT+IDADGGL ASPRIRFNK+G LLA
Sbjct: 598  RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGGLQASPRIRFNKEGSLLA 657

Query: 627  VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADR 686
            VS NDN IK++A SDG+RLL T ENL      +SE+SKP I+ I            + +R
Sbjct: 658  VSANDNMIKVMANSDGLRLLHTVENL------SSESSKPAINSIP-----------MVER 700

Query: 687  AASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 746
             AS+VSIPGMNGD R++ DVKP ITEESNDKSKVWKLTE+ EP+QCRSLRLPEN+R TKI
Sbjct: 701  PASVVSIPGMNGDSRNMVDVKPVITEESNDKSKVWKLTEVGEPSQCRSLRLPENMRVTKI 760

Query: 747  SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 806
            SRLIFTNSGNAILALASNAIHLLWKWQR +RN++GKATAS+ PQ WQP SGI+MTNDV +
Sbjct: 761  SRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASLPPQQWQPASGILMTNDVAE 820

Query: 807  SNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI 866
            +NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI
Sbjct: 821  TNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI 880

Query: 867  IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 926
            IAIGMDDS+IQIYNVRVDEVKSKLKGHSKRITGLAFS+ LNVLVSSGAD+QLCVW++DGW
Sbjct: 881  IAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDGW 940

Query: 927  EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRES 986
            EKQK++ LQIP GR+ ++ SDTRVQFHQDQ+HFLVVHETQLAI+ETTKLEC+KQW  RES
Sbjct: 941  EKQKSKVLQIPQGRSTSSLSDTRVQFHQDQVHFLVVHETQLAIYETTKLECMKQWPVRES 1000

Query: 987  SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIA 1046
            +APITHATFSCDSQL+Y  F+DAT+CVFS+ANL+LRCR+NPSAYLPA +S+SNVHPLVIA
Sbjct: 1001 AAPITHATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPASLSNSNVHPLVIA 1060

Query: 1047 AHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR 1106
            AHPQE N FA+GLSDGGVH+FEPLESEGKWGV PP +NGS S++ ATP VG S SDQ QR
Sbjct: 1061 AHPQESNMFAVGLSDGGVHIFEPLESEGKWGVAPPPENGSASAVTATPSVGASASDQPQR 1120

Transcriptional corepressor. Activates TIR-NB-LRR R protein-mediated immune responses through repression of negative regulators such as CNGC2/DND1. Negative regulator of jasmonate responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q27GK7|TPR4_ARATH Topless-related protein 4 OS=Arabidopsis thaliana GN=TPR4 PE=1 SV=2

 Score = 1590 bits (4117), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 775/1147 (67%), Positives = 905/1147 (78%), Gaps = 53/1147 (4%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFK+TVH+LE+ESGFFFNM+YFED V  G WDDVEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKDTVHRLEKESGFFFNMRYFEDSVTAGEWDDVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDK D AKAV+ILVK+LKVFSTFNEELFKEIT LLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKKDHAKAVDILVKELKVFSTFNEELFKEITMLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNS--------SLN 172
            L NFRENEQLSKYGDTKSAR IML ELKKLIEANPLFRDKLQFP+LKNS        SLN
Sbjct: 121  LTNFRENEQLSKYGDTKSARGIMLGELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180

Query: 173  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 232
            WQHQLCKNPRPNPDIKTLFVDHTCG PNGA  PSP  N L+GS+PK G FPPLGAHGPFQ
Sbjct: 181  WQHQLCKNPRPNPDIKTLFVDHTCGHPNGAHTPSPTTNHLMGSVPKVGGFPPLGAHGPFQ 240

Query: 233  PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKH--PRTPPTNP-SVDYP 289
            PTPAP+ T LAGWM NP +V HP VS G IGLG+P+   + LK   PR+PPTN  S+DY 
Sbjct: 241  PTPAPLTTSLAGWMPNP-SVQHPTVSAGPIGLGAPNSAVSMLKRERPRSPPTNSLSMDYQ 299

Query: 290  SGDSDHLSKRTRPIGISDEIN-LPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLN 348
            + DS+ + KR RP GISD +N LPVNVLPV++ G SH+H+    +ST +DLPK V+R L+
Sbjct: 300  TADSESVLKRPRPFGISDGVNNLPVNVLPVTYPGQSHAHA---TYST-DDLPKNVSRILS 355

Query: 349  QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALV 408
            QGS+  SMDFHPVQQT+LLVGTN+GDI +WEVGSRE+LV R+FKVWDL  C++ LQA+L 
Sbjct: 356  QGSAIKSMDFHPVQQTMLLVGTNLGDIAIWEVGSREKLVSRSFKVWDLATCTVNLQASLA 415

Query: 409  KDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP 468
             +   +VNRV+WSPDG L GVAYS+HIV IYSYHGG+++R HLEIDAH G VND+AFS P
Sbjct: 416  SEYTAAVNRVVWSPDGGLLGVAYSKHIVHIYSYHGGEDLRNHLEIDAHAGNVNDLAFSQP 475

Query: 469  NKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIK 528
            N+QLCV+TCG+DKTIKVWDA  G K + FEGHEAPVYSVCPH KENIQFIFSTA+DGKIK
Sbjct: 476  NQQLCVVTCGEDKTIKVWDAVTGNKLHTFEGHEAPVYSVCPHQKENIQFIFSTAVDGKIK 535

Query: 529  AWLYDNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQ 562
            AWLYDN+GSRVDY+APGR CT+MAY ADGTR                          TY 
Sbjct: 536  AWLYDNMGSRVDYDAPGRSCTSMAYCADGTRLFSCGTSKEGESFIVEWNESEGAVKRTYL 595

Query: 563  GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG 622
            G  KRS+GVVQFDT KN+FL AGD+F +KFWDMDSV LL+S  A+GGLP+SP +R NK+G
Sbjct: 596  GLGKRSVGVVQFDTMKNKFLVAGDEFQVKFWDMDSVDLLSSTAAEGGLPSSPCLRINKEG 655

Query: 623  CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS---KPTISPISAAAAAAAT 679
             LLAVST DNGIKILA ++G R+L +  N   D+SR    S    P +       ++   
Sbjct: 656  TLLAVSTTDNGIKILANAEGSRILHSMANRGLDSSRAPPGSVAKGPIVGTFGTPNSSTGM 715

Query: 680  SAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE 739
            S  + +R+  + S+ G+NGD RSL DVKPRI +++ +KSK WKLTE+SE +Q R+LRLP+
Sbjct: 716  SLSMGERSGPVASVTGLNGDNRSLPDVKPRIADDA-EKSKTWKLTEISERSQLRTLRLPD 774

Query: 740  NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIM 799
             L   ++ +LI+TNSG AILALA NA H LWKWQ++ERN  GKA ++V PQLWQP SG++
Sbjct: 775  TLLPARVVKLIYTNSGGAILALAENAAHKLWKWQKSERNLLGKANSNVPPQLWQPSSGVL 834

Query: 800  MTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAF 859
            MTND  + N E+ VPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFM PPPAAT LAF
Sbjct: 835  MTNDTREGNKEDVVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMAPPPAATSLAF 894

Query: 860  HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLC 919
            HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH KR+TGLAFS+ LNVLVSSGADSQLC
Sbjct: 895  HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHQKRVTGLAFSNVLNVLVSSGADSQLC 954

Query: 920  VWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVK 979
            VWS DGWEKQ ++ +QIP+G +P   + TRVQFHQDQIH LVVH +QLAI+E  KLE +K
Sbjct: 955  VWSMDGWEKQASKQIQIPSGHSPNPLAHTRVQFHQDQIHVLVVHASQLAIYEAPKLENMK 1014

Query: 980  QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSN 1039
            QW+P+ESS  +T A +SCDSQ +YA F D +V + +A  L+L+CRI P++YLP+   SS 
Sbjct: 1015 QWIPKESSGSVTDAVYSCDSQSIYAAFDDGSVSILTATTLQLKCRIGPNSYLPSN-PSSR 1073

Query: 1040 VHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGS 1099
            V+P  +AAHP EPN+FA+GL+DGGVHV EP   EGKWG+  P +NG+  S+ + P     
Sbjct: 1074 VYPATVAAHPSEPNQFAVGLTDGGVHVIEPPGPEGKWGISAPPENGAGPSVSSAP----- 1128

Query: 1100 GSDQAQR 1106
            GSDQ  R
Sbjct: 1129 GSDQQPR 1135

Transcriptional corepressor. Negative regulator of jasmonate responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRZ0|TPR2_ARATH Topless-related protein 2 OS=Arabidopsis thaliana GN=TPR2 PE=1 SV=2

 Score = 1362 bits (3525), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 687/1123 (61%), Positives = 836/1123 (74%), Gaps = 69/1123 (6%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKE+VHKLEQESGFFFN+KYFE++   G WD+VEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALD++DRAKAVEIL KDLKVF+TFNEEL+KEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLK--------NSSLN 172
            LENFRENEQLSKYGDTKSARSIM  ELKKLIEANPLFR+KL FP+ K        N SLN
Sbjct: 121  LENFRENEQLSKYGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSLN 180

Query: 173  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAH-GPF 231
            WQHQLCKNPRPNPDIKTLF+DH+C   NGARA +P N P + ++ +   F PLG H GPF
Sbjct: 181  WQHQLCKNPRPNPDIKTLFLDHSCSPSNGARALTPVNLP-VAAVARPSNFVPLGVHGGPF 239

Query: 232  QP--TPAPVPTPLAGWMSNP-PTVTHPAVSGGAIGLGSPSIPAAA--LKHPRTPPTNPSV 286
            Q    PAP    LAGWM+NP P+ + P  SG       P  P+    LKHPR P  +  +
Sbjct: 240  QSNPAPAPNANALAGWMANPNPSSSVP--SGVVAASPFPMQPSQVNELKHPRAPSNSLGL 297

Query: 287  -DYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTR 345
             DY S D + L KR R    S+E+  P             +HSH  A  + +DLP+ V  
Sbjct: 298  MDYQSADHEQLMKRLRSAQTSNEVTYP-------------AHSHPPA--SLDDLPRNVVS 342

Query: 346  TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQA 405
            T+ QGS  +SMDFHP   TLL VG + G++ LWEVGSRE++V   FK+W++ ACS+  Q 
Sbjct: 343  TIRQGSVVISMDFHPSHHTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQG 402

Query: 406  ALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF 465
            ++VK+P +SV RV WSPDG+L GV++++H++ +Y+Y G D +RQHLEIDAHVG VND+AF
Sbjct: 403  SIVKEPSISVTRVAWSPDGNLLGVSFTKHLIHVYAYQGSD-LRQHLEIDAHVGCVNDLAF 461

Query: 466  SHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDG 525
            +HPNKQ+CV+TCGDDK IKVWD + G K + FEGHEAPVYS+CPH KENIQFIFSTALDG
Sbjct: 462  AHPNKQMCVVTCGDDKLIKVWDLS-GKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDG 520

Query: 526  KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT--------------------------R 559
            KIKAWLYDN+GSRVDY+APG+WCTTM YSADG+                          R
Sbjct: 521  KIKAWLYDNVGSRVDYDAPGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKR 580

Query: 560  TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN 619
            TY GFRK+S GVVQFDTT+NRFLA G+D  IKFW+MD+  LLT ++A+GGLP  PR+RFN
Sbjct: 581  TYLGFRKKSAGVVQFDTTRNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFN 640

Query: 620  KDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAAT 679
            KDG LLAV+T DNG KILA +DG+R LR FE  +++AS+ S + K + S ++++ + A  
Sbjct: 641  KDGNLLAVTTADNGFKILANTDGLRTLRAFEARSFEASKASIDMKVSTSAMASSISPAIG 700

Query: 680  SAGLADRAASMVSIPGMNG-DVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLP 738
                 D  +     P  NG +  S    KPR   +S DKSK  +LTE+ +P QCR + +P
Sbjct: 701  KIEHMDAGSPARPTPIPNGIEAMSRTMEKPR-NLDSVDKSKPLELTEIVDPTQCRQVTMP 759

Query: 739  ENLRA-TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSG 797
            ++  + +K++RL++TNSG  +LAL SN +  LWKW R E+N +GKATASV PQ WQP SG
Sbjct: 760  DSKDSVSKVARLLYTNSGVGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQHWQPNSG 819

Query: 798  IMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFL 857
            ++M NDV + NPE +VPC ALSKNDSYVMSA GGK+SLFNMMTFK M TFMPPPPA+TFL
Sbjct: 820  LLMANDVPE-NPEGSVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFL 878

Query: 858  AFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQ 917
            AFHPQDNNIIAIGM+DSSI IYNVRVDEVK+KLKGH K ITGLAFS ALN+LVSSGAD+Q
Sbjct: 879  AFHPQDNNIIAIGMEDSSIHIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQ 938

Query: 918  LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLEC 977
            L  W++D WEK+K+  +Q+P G+ P    DTRVQFH DQI  LV HETQLAI++ +K+EC
Sbjct: 939  LFFWTADSWEKKKSSAIQLPPGKAPVG--DTRVQFHNDQIQLLVSHETQLAIYDASKMEC 996

Query: 978  VKQWVPRES-SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV- 1035
            + +WVP+E+ S+PIT A++SC+SQLVYA F D  + VF A +L+LRCRI PSAY+P    
Sbjct: 997  IHKWVPQEALSSPITSASYSCNSQLVYASFADGNIAVFDAESLRLRCRIAPSAYMPQPTP 1056

Query: 1036 SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGV 1078
            +S+ + P VI AHPQEPN+ A+GLSDG V V EP E   +WGV
Sbjct: 1057 NSAPIFPQVITAHPQEPNQLAVGLSDGSVKVIEPSELSRRWGV 1099

Transcriptional corepressor. Negative regulator of jasmonate responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84JM4|TPR3_ARATH Topless-related protein 3 OS=Arabidopsis thaliana GN=TPR3 PE=1 SV=1

 Score = 1315 bits (3404), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 667/1132 (58%), Positives = 819/1132 (72%), Gaps = 76/1132 (6%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFL+EEKFKE+VH+LE+ESGFFFN KYF+++V  G WDDVE YLSGF
Sbjct: 1    MSSLSRELVFLILQFLEEEKFKESVHRLEKESGFFFNTKYFDEKVLAGEWDDVETYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALD+ ++AKAVEILV+DL+VFSTFNEEL+KEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDRQEKAKAVEILVQDLRVFSTFNEELYKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLK--------NSSLN 172
            L+NFRENEQLSKYGDTK+AR IML ELKKLIEANPLFRDKL FP L+        N SLN
Sbjct: 121  LQNFRENEQLSKYGDTKTARGIMLGELKKLIEANPLFRDKLMFPTLRSSRLRTLINQSLN 180

Query: 173  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAH-GPF 231
            WQHQLCKNPRPNPDIKTLF DHTC  PNG  APS  N P+  +L K   +P LG H    
Sbjct: 181  WQHQLCKNPRPNPDIKTLFTDHTCTLPNGPLAPSAVNQPVT-TLTKPAAYPSLGPHVPFP 239

Query: 232  QPTPAPVPTPLAGWMS--NPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPS-VDY 288
                A     LA WM+  +  +    AV   A+ +  P    + LK PRTPP  P  VDY
Sbjct: 240  PGPAAANAGALASWMAAASGASAVQAAVVTPAL-MPQPQNQMSILKRPRTPPATPGIVDY 298

Query: 289  PSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLN 348
             + D + L KR RP    +E+  P                  QA  + EDLP      L+
Sbjct: 299  QNPDHE-LMKRLRPAPSVEEVTYPA--------------PRQQAPWSLEDLPTKAALALH 343

Query: 349  QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALV 408
            QGS+  SM+F+P+Q TLLLVG+  G+I LWE+ +RERLV R FK+WD+  CS   QA + 
Sbjct: 344  QGSTVTSMEFYPMQNTLLLVGSATGEITLWELAARERLVSRPFKIWDMSNCSHQFQALIA 403

Query: 409  KDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP 468
            K+  +SV RV WSPDG+  GVA+++H++Q+Y++ G +++RQH EIDAHVG VND+AF++P
Sbjct: 404  KETPISVTRVAWSPDGNFIGVAFTKHLIQLYAFSGPNDLRQHTEIDAHVGAVNDLAFANP 463

Query: 469  NKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIK 528
            N+QLCVITCGDDK IKVWD + G K + FEGH+APVYS+CPH+KENIQFIFSTA+DGKIK
Sbjct: 464  NRQLCVITCGDDKLIKVWDVS-GRKHFTFEGHDAPVYSICPHYKENIQFIFSTAIDGKIK 522

Query: 529  AWLYDNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQ 562
            AWLYDNLGSRVDY+APG+WCT M YSADGTR                          TY+
Sbjct: 523  AWLYDNLGSRVDYDAPGKWCTRMLYSADGTRLFSCGTSKDGDSFLVEWNESEGSIKRTYK 582

Query: 563  GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG 622
             F+K+  GVVQFDT+KN FLA G+D  IKFWDM+++ +LTS DA+GGLPA P +RFNKDG
Sbjct: 583  EFQKKLAGVVQFDTSKNHFLAVGEDGQIKFWDMNNINVLTSTDAEGGLPALPHLRFNKDG 642

Query: 623  CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAG 682
             LLAV+T DNG KILA   G R LR  E  A +  RT  + K      +   A  A+   
Sbjct: 643  NLLAVTTADNGFKILANPAGFRSLRAMETPASETMRTPVDFK------AVPGAPVASVNC 696

Query: 683  LADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL- 741
              +R + +     +NG    +   K RI ++S DK K W+L E+ +P+QC    LP+   
Sbjct: 697  KVERGSPVRHSQMLNG----VDPSKSRI-DDSTDKPKSWQLAEILDPSQCFQATLPDTAG 751

Query: 742  RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 801
             +TK+ +L++TNSG  ILAL SN I  LWKW   E+N SGKATA+V PQ WQP SG++MT
Sbjct: 752  SSTKVVQLLYTNSGAGILALGSNGIQRLWKWVPNEQNPSGKATATVVPQHWQPNSGLLMT 811

Query: 802  NDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHP 861
            NDV+  N E A PC ALSKNDSYVMSA+GGK+SLFNMMTFK M TFMPPPPA+TFLAFHP
Sbjct: 812  NDVSGVNLENAAPCIALSKNDSYVMSAAGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHP 871

Query: 862  QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 921
            QDNN+IAIGM+DS+I IYNVRVDEVKSKLKGH KRITGLAFS ALN+LVSSGAD+Q+C W
Sbjct: 872  QDNNVIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTALNILVSSGADAQICFW 931

Query: 922  SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQW 981
            S D WEK+K+  +Q+P G+   A  DTRVQFH DQ+  LVVHETQLA+F+ +K+EC++QW
Sbjct: 932  SIDTWEKRKSVAIQMPAGK--AANGDTRVQFHVDQLRILVVHETQLAVFDASKMECIRQW 989

Query: 982  VPRES-SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNV 1040
            +P++S SAPI+ A ++C+SQL+Y  F D  + VF A +L+LRCRI+PSAYLP G  +  +
Sbjct: 990  IPQDSLSAPISSAVYACNSQLIYTTFRDGNIGVFDADSLRLRCRISPSAYLPQG--NQGL 1047

Query: 1041 HPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPP---VDNGSTSS 1089
             PLV+AAHPQ+PN+FA+GL+DG V + EP E EGKWG+ PP   +++ ST+S
Sbjct: 1048 SPLVVAAHPQDPNQFAVGLNDGSVKMMEPTEGEGKWGMIPPSEAINSPSTTS 1099

Transcriptional corepressor. Negative regulator of jasmonate responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 95/325 (29%), Positives = 135/325 (41%), Gaps = 55/325 (16%)

Query: 342  TVTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDL--GA 398
            T T+TL   GSS +S+ F P  Q    V +  GD              +  K+WD   G 
Sbjct: 958  TCTQTLEGHGSSVLSVAFSPDGQR---VASGSGD--------------KTIKIWDTASGT 1000

Query: 399  CSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVG 458
            C+  L+       G SV  V +SPDG           ++I+    G    Q LE   H G
Sbjct: 1001 CTQTLEG-----HGGSVWSVAFSPDGQRVASGSDDKTIKIWDTASG-TCTQTLE--GHGG 1052

Query: 459  GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI 518
             V  + FS P+ Q  V +  DD TIK+WDA +G      EGH   V+SV      + Q +
Sbjct: 1053 WVQSVVFS-PDGQR-VASGSDDHTIKIWDAVSGTCTQTLEGHGDSVWSVA--FSPDGQRV 1108

Query: 519  FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV------- 571
             S ++DG IK W   +       E  G W  ++A+S DG R   G    ++ +       
Sbjct: 1109 ASGSIDGTIKIWDAASGTCTQTLEGHGGWVHSVAFSPDGQRVASGSIDGTIKIWDAASGT 1168

Query: 572  --------------VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIR 617
                          V F     R  +   D +IK WD  S     +++  GG   S  + 
Sbjct: 1169 CTQTLEGHGGWVQSVAFSPDGQRVASGSSDKTIKIWDTASGTCTQTLEGHGGWVQS--VA 1226

Query: 618  FNKDGCLLAVSTNDNGIKILATSDG 642
            F+ DG  +A  ++DN IKI  T+ G
Sbjct: 1227 FSPDGQRVASGSSDNTIKIWDTASG 1251

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.

Podospora anserina (taxid: 5145)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score = 83.6 bits (205), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 119/531 (22%), Positives = 215/531 (40%), Gaps = 64/531 (12%)

Query: 414  SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
            SV  V +SPDG LF    S  IV+ +    G E+   L    H   VN + FS   K L 
Sbjct: 866  SVLTVAFSPDGKLFATGDSGGIVRFWEAATGKEL---LTCKGHNSWVNSVGFSQDGKMLA 922

Query: 474  VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
              +  DD+T+++WD ++G     F+GH + V SV      N   + S + D  ++ W   
Sbjct: 923  --SGSDDQTVRLWDISSGQCLKTFKGHTSRVRSVV--FSPNSLMLASGSSDQTVRLWDIS 978

Query: 534  NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD-DFSIKF 592
            +      ++    W  ++A++ DG+                       LA G  D +++ 
Sbjct: 979  SGECLYIFQGHTGWVYSVAFNLDGS----------------------MLATGSGDQTVRL 1016

Query: 593  WDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL 652
            WD+ S Q        G       + F+ DG +LA  ++D  +++   S G   L T +  
Sbjct: 1017 WDISSSQCFYIFQ--GHTSCVRSVVFSSDGAMLASGSDDQTVRLWDISSG-NCLYTLQG- 1072

Query: 653  AYDASRTSENSKPTISPISAAAAAAATS--AGLADRAAS--MVSIPGMNGDVRSLADVKP 708
                  TS       SP  A  A+        L D ++   + ++ G    VR L     
Sbjct: 1073 -----HTSCVRSVVFSPDGAMLASGGDDQIVRLWDISSGNCLYTLQGYTSWVRFLVFSPN 1127

Query: 709  RITEESNDKSKVWKLTELSEPNQCRSLRLPEN-LRATKIS---RLIFTNSGNAILAL--- 761
             +T  +    ++ +L ++S      +L+   N + A   S     + + SG+  + L   
Sbjct: 1128 GVTLANGSSDQIVRLWDISSKKCLYTLQGHTNWVNAVAFSPDGATLASGSGDQTVRLWDI 1187

Query: 762  -ASNAIHLLW---KW-QRTERNSSGKATASVAP----QLWQPPSGIMMTNDVTDSNPEEA 812
             +S  +++L     W      N  G   AS +     +LW+  S   +    T       
Sbjct: 1188 SSSKCLYILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCL---CTFQGHTSW 1244

Query: 813  VPCFALSKNDSYVMSASGGK-ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM 871
            V     + + S + S S  K + L+++ + K + TF         +AF+P D +++A G 
Sbjct: 1245 VNSVVFNPDGSMLASGSSDKTVRLWDISSSKCLHTFQGHTNWVNSVAFNP-DGSMLASGS 1303

Query: 872  DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
             D +++++ +   +     +GH+  ++ + FS    +L S   D  + +WS
Sbjct: 1304 GDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWS 1354

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q54KL5|WDR5_DICDI WD repeat-containing protein 5 homolog OS=Dictyostelium discoideum GN=wdr5 PE=3 SV=1

 Score = 77.8 bits (190), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 111/236 (47%), Gaps = 29/236 (12%)

Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
           S++ V +SPDG     A +   ++I+  + G   R    ++ H  G++DIA+S  +K +C
Sbjct: 48  SISSVKFSPDGKWLASASADKTIKIWGAYDGKFERT---LEGHKEGISDIAWSQDSKLIC 104

Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
             +  DDKTIK+WD  +G      +GH+  V+ V  + + N+  I S + D  ++ W   
Sbjct: 105 --SASDDKTIKIWDVESGKMVKTLKGHKEYVFGVSFNPQSNL--IVSGSFDENVRIWDV- 159

Query: 534 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 593
           N G           CT M  +     T           V F+      ++   D +++ W
Sbjct: 160 NTGE----------CTKMISAHSDPVT----------GVHFNRDGTLVVSGSYDGTVRIW 199

Query: 594 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 649
           D  + QLL +I  + G   S  ++F+ +G  +   T DN +++ + ++  + L+T+
Sbjct: 200 DTTTGQLLNTISTEDGKEVS-FVKFSPNGKFVLAGTLDNTLRLWSYNNNKKCLKTY 254

Dictyostelium discoideum (taxid: 44689)

>sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 111/505 (21%), Positives = 200/505 (39%), Gaps = 75/505 (14%)

Query: 446  EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 505
            E+++   ++ H  GV  I+ S   +   + +   DKTIK+W + +G       GHE  VY
Sbjct: 1061 EMQERNRLEGHKDGVISISISRDGQ--TIASGSLDKTIKLW-SRDGRLFRTLNGHEDAVY 1117

Query: 506  SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT--RTYQG 563
            SV      + Q I S   D  IK W                       ++DGT  +T  G
Sbjct: 1118 SVS--FSPDGQTIASGGSDKTIKLW----------------------QTSDGTLLKTITG 1153

Query: 564  FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC 623
              ++++  V F        +A  D SIK WD  S QLL ++   G       +RF+ DG 
Sbjct: 1154 -HEQTVNNVYFSPDGKNLASASSDHSIKLWDTTSGQLLMTLT--GHSAGVITVRFSPDGQ 1210

Query: 624  LLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGL 683
             +A  + D  +K+    DG +LL+T     +     S +  P    +++A+A        
Sbjct: 1211 TIAAGSEDKTVKLWHRQDG-KLLKTLN--GHQDWVNSLSFSPDGKTLASASADKTIKLWR 1267

Query: 684  ADRAASMVSIPGMNG---DVRSLADVKPRITEESNDKSKVWK------------------ 722
                  + ++ G N    DV   +D K   +   ++  K+W                   
Sbjct: 1268 IADGKLVKTLKGHNDSVWDVNFSSDGKAIASASRDNTIKLWNRHGIELETFTGHSGGVYA 1327

Query: 723  LTELSEPNQCRSLRLPENLRATK---ISRLIFTNSGNAILALASNAIHLLWKWQRTERNS 779
            +  L + N   S  L   +R  +   IS L      + + A++   +H        + + 
Sbjct: 1328 VNFLPDSNIIASASLDNTIRLWQRPLISPLEVLAGNSGVYAVS--FLH--------DGSI 1377

Query: 780  SGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGK-ISLFNM 838
               A A    QLW    G ++     +    +A+   + +     + SA+  K + ++ +
Sbjct: 1378 IATAGADGNIQLWHSQDGSLLKTLPGN----KAIYGISFTPQGDLIASANADKTVKIWRV 1433

Query: 839  MTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT 898
               K + T +        + F P D   +A    D++++++NV   + K  LKGH+  + 
Sbjct: 1434 RDGKALKTLIGHDNEVNKVNFSP-DGKTLASASRDNTVKLWNVSDGKFKKTLKGHTDEVF 1492

Query: 899  GLAFSHALNVLVSSGADSQLCVWSS 923
             ++FS    ++ S+ AD  + +W S
Sbjct: 1493 WVSFSPDGKIIASASADKTIRLWDS 1517

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 114/543 (20%), Positives = 205/543 (37%), Gaps = 69/543 (12%)

Query: 421  SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD 480
            SP+G L     +   V+++    G  +   L    H   V  + FS P+ ++ + +CG D
Sbjct: 651  SPEGQLLATCDTDCHVRVWEVKSGKLL---LICRGHSNWVRFVVFS-PDGEI-LASCGAD 705

Query: 481  KTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD 540
            + +K+W   +G       GHE  V+SV  H   + + + S + D  IK W   +      
Sbjct: 706  ENVKLWSVRDGVCIKTLTGHEHEVFSVAFH--PDGETLASASGDKTIKLWDIQDGTCLQT 763

Query: 541  YEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL 600
                  W   +A+S DG                     N   ++  D +IK WD+   + 
Sbjct: 764  LTGHTDWVRCVAFSPDG---------------------NTLASSAADHTIKLWDVSQGKC 802

Query: 601  LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTS 660
            L ++ +  G   S  + F+ DG  LA  + D  IKI     G   L+T+  + +  S  S
Sbjct: 803  LRTLKSHTGWVRS--VAFSADGQTLASGSGDRTIKIWNYHTG-ECLKTY--IGHTNSVYS 857

Query: 661  ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLA---DVKPRITEESNDK 717
                P    + + +               + ++ G   +V S+A   D +       +  
Sbjct: 858  IAYSPDSKILVSGSGDRTIKLWDCQTHICIKTLHGHTNEVCSVAFSPDGQTLACVSLDQS 917

Query: 718  SKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHL-LWKWQRTE 776
             ++W         QC    L      T  +  +  +    ILA  SN   + LW WQ  +
Sbjct: 918  VRLWN----CRTGQC----LKAWYGNTDWALPVAFSPDRQILASGSNDKTVKLWDWQTGK 969

Query: 777  RNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPE----EAVPCFA-LSKNDSYVMS---- 827
              SS +        +   P    + +  TDS+          CF  L ++  +V +    
Sbjct: 970  YISSLEGHTDFIYGIAFSPDSQTLASASTDSSVRLWNISTGQCFQILLEHTDWVYAVVFH 1029

Query: 828  ------ASGG---KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQI 878
                  A+G     + L+N+ T + + T          +A+ P D  ++A    D S+++
Sbjct: 1030 PQGKIIATGSADCTVKLWNISTGQCLKTLSEHSDKILGMAWSP-DGQLLASASADQSVRL 1088

Query: 879  YNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPT 938
            ++         L+GHS R+    FS    ++ +   D  + +     W+ Q+ + L+  T
Sbjct: 1089 WDCCTGRCVGILRGHSNRVYSAIFSPNGEIIATCSTDQTVKI-----WDWQQGKCLKTLT 1143

Query: 939  GRT 941
            G T
Sbjct: 1144 GHT 1146

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1106
24461849	1127	CTV.2 [Citrus trifoliata]	0.995	0.976	0.970	0.0
224134436	1172	predicted protein [Populus trichocarpa]	0.995	0.939	0.843	0.0
356550630	1132	PREDICTED: topless-related protein 1-lik	0.991	0.969	0.849	0.0
225463556	1138	PREDICTED: protein TOPLESS [Vitis vinife	0.993	0.965	0.851	0.0
356526242	1133	PREDICTED: protein TOPLESS-like [Glycine	0.991	0.968	0.851	0.0
449517721	1139	PREDICTED: LOW QUALITY PROTEIN: protein	0.995	0.966	0.842	0.0
449468952	1139	PREDICTED: protein TOPLESS-like [Cucumis	0.995	0.966	0.842	0.0
255553317	1115	WD-repeat protein, putative [Ricinus com	0.975	0.967	0.845	0.0
357458875	1138	WD repeat-containing protein, putative [	0.993	0.965	0.835	0.0
356554802	1136	PREDICTED: topless-related protein 1-lik	0.995	0.969	0.835	0.0

>gi|24461849|gb|AAN62336.1|AF506028_3 CTV.2 [Citrus trifoliata]

 Score = 2245 bits (5818), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1099/1132 (97%), Positives = 1099/1132 (97%), Gaps = 31/1132 (2%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSSLNWQHQLCKN 180
            LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSSLNWQHQLCKN
Sbjct: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSSLNWQHQLCKN 180

Query: 181  PRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVPT 240
            PRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVPT
Sbjct: 181  PRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVPT 240

Query: 241  PLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRT 300
            PLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRT
Sbjct: 241  PLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRT 300

Query: 301  RPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHP 360
            RPIGISDEINLPVNVLPVSFTGHSHS    QAFS PEDLPKTVTRTLNQGSSPMSMDFHP
Sbjct: 301  RPIGISDEINLPVNVLPVSFTGHSHS----QAFSAPEDLPKTVTRTLNQGSSPMSMDFHP 356

Query: 361  VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 420
            VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW
Sbjct: 357  VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 416

Query: 421  SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD 480
            SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD
Sbjct: 417  SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD 476

Query: 481  KTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD 540
            KTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD
Sbjct: 477  KTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD 536

Query: 541  YEAPGRWCTTMAYSADGTR--------------------------TYQGFRKRSLGVVQF 574
            YEAPGRWCTTMAYSADGTR                          TYQGFRKRSLGVVQF
Sbjct: 537  YEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFRKRSLGVVQF 596

Query: 575  DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGI 634
            DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGI
Sbjct: 597  DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGI 656

Query: 635  KILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIP 694
            KILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIP
Sbjct: 657  KILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIP 716

Query: 695  GMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNS 754
            GMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNS
Sbjct: 717  GMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNS 776

Query: 755  GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP 814
            GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP
Sbjct: 777  GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP 836

Query: 815  CFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS 874
            CFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS
Sbjct: 837  CFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS 896

Query: 875  SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFL 934
            SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW SDGWEKQKNRFL
Sbjct: 897  SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWGSDGWEKQKNRFL 956

Query: 935  QIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHAT 994
            QIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHAT
Sbjct: 957  QIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHAT 1016

Query: 995  FSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNE 1054
            FSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV SSNVHPLVIAAHPQEPNE
Sbjct: 1017 FSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV-SSNVHPLVIAAHPQEPNE 1075

Query: 1055 FALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR 1106
            FALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR
Sbjct: 1076 FALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR 1127

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134436|ref|XP_002327405.1| predicted protein [Populus trichocarpa] gi|222835959|gb|EEE74380.1| predicted protein [Populus trichocarpa]

 Score = 2026 bits (5248), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 993/1177 (84%), Positives = 1046/1177 (88%), Gaps = 76/1177 (6%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDKHDR+KAVEILVKDLKVFSTFNEELFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFSTFNEELFKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNS--------SLN 172
            LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFPNLKNS        SLN
Sbjct: 121  LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180

Query: 173  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 232
            WQHQLCK PR NPDIKTLF DH+CGQPNGARAPSPANNPLLGSLPKAG FPPLGAHGPFQ
Sbjct: 181  WQHQLCKTPRSNPDIKTLFFDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQ 240

Query: 233  PTPAPVPTPLAGWMSNPPTVTHPAVSGG-AIGLGSPSIPA-------------------- 271
            PTPAPVP PLAGWMSNPPTVTHPAVSGG AIGLG+PSI                      
Sbjct: 241  PTPAPVPAPLAGWMSNPPTVTHPAVSGGGAIGLGAPSISGSSFLLFAIDASANHHTEYVS 300

Query: 272  ----------------AALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNV 315
                            AALKHPRTPP+NPSVDYPSGD DH++KRTRP+GISDE+NLPVNV
Sbjct: 301  IHVSLFNNICILLPCVAALKHPRTPPSNPSVDYPSGDPDHVAKRTRPMGISDEVNLPVNV 360

Query: 316  LPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDI 375
            LP+SF GH H H   Q F+ P+DLPK V RTLNQGSSPMSMDFHPVQQT+LLVGTNVG+I
Sbjct: 361  LPMSFPGHGHGHG--QTFNAPDDLPKAVVRTLNQGSSPMSMDFHPVQQTILLVGTNVGEI 418

Query: 376  GLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI 435
            GLWEVGSRERLVLRNFKVWDL ACSMPLQAALVKDPGVSVNRVIWSPDG+LFGVAYSRHI
Sbjct: 419  GLWEVGSRERLVLRNFKVWDLNACSMPLQAALVKDPGVSVNRVIWSPDGNLFGVAYSRHI 478

Query: 436  VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY 495
            VQIYSYHG D+VRQHLEIDAHVGGVND+AFS PNKQLCVITCGDDK IKVWDA  GAKQY
Sbjct: 479  VQIYSYHGNDDVRQHLEIDAHVGGVNDLAFSTPNKQLCVITCGDDKIIKVWDAATGAKQY 538

Query: 496  IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA 555
             FEGHEAPVYS+CPH+KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA
Sbjct: 539  TFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA 598

Query: 556  DGTR--------------------------TYQGFRKRSLGVVQFDTTKNRFLAAGDDFS 589
            DGTR                          TY GFRK SLGVVQFDTTKNRFLAAGDDFS
Sbjct: 599  DGTRLFSCGTSKDGESYIVEWNESEGAVKRTYVGFRKHSLGVVQFDTTKNRFLAAGDDFS 658

Query: 590  IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 649
            IKFWDMDSVQLLT+IDADGGLPASPRIRFNK+G LLAVS NDNGIKILA SDGIRLLRTF
Sbjct: 659  IKFWDMDSVQLLTTIDADGGLPASPRIRFNKEGTLLAVSANDNGIKILANSDGIRLLRTF 718

Query: 650  ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPR 709
            ENL+YDASR SE+  PT++PISAAAAAAATS+GLADR AS+V++ GMNGD R+L DVKPR
Sbjct: 719  ENLSYDASRASES--PTVNPISAAAAAAATSSGLADRGASVVAVAGMNGDARNLGDVKPR 776

Query: 710  ITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL 769
            I EE NDKSK+WKLTE++EP+QCRSLRLPENLR TKISRLI+TNSGNAILALASNAIHLL
Sbjct: 777  IAEELNDKSKIWKLTEINEPSQCRSLRLPENLRVTKISRLIYTNSGNAILALASNAIHLL 836

Query: 770  WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS 829
            WKWQR++RN+SGKATA V PQLWQP SGI+MTND+TDSNPEEAV CFALSKNDSYVMSAS
Sbjct: 837  WKWQRSDRNASGKATAGVPPQLWQPSSGILMTNDITDSNPEEAVACFALSKNDSYVMSAS 896

Query: 830  GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 889
            GGKISLFNMMTFKTM TFMPPPPAATFLAFHPQDNNIIAIGMDDS+IQIYNVRVDEVKSK
Sbjct: 897  GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSK 956

Query: 890  LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTR 949
            LKGHSKRITGLAFSH L+VLVSSGAD+QLCVW+SDGWEKQK RFLQ+PTGRT TAQSDTR
Sbjct: 957  LKGHSKRITGLAFSHVLSVLVSSGADAQLCVWNSDGWEKQKTRFLQVPTGRTTTAQSDTR 1016

Query: 950  VQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA 1009
            VQFHQDQIHFLVVHETQLAIFETTKLECVKQW+PRESSAPI+HA FSCDSQLVYA FLDA
Sbjct: 1017 VQFHQDQIHFLVVHETQLAIFETTKLECVKQWLPRESSAPISHAVFSCDSQLVYASFLDA 1076

Query: 1010 TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1069
            TVCVFSAANL+LRCRINPS+Y P  V SSNVHPLVIAAHPQEPN+FALGLSDGGVHVFEP
Sbjct: 1077 TVCVFSAANLRLRCRINPSSYPPPNV-SSNVHPLVIAAHPQEPNQFALGLSDGGVHVFEP 1135

Query: 1070 LESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR 1106
            LESEGKWGVPPP +NGS SS+ A P VG SGSDQAQR
Sbjct: 1136 LESEGKWGVPPPAENGSASSVAAIPSVGPSGSDQAQR 1172

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550630|ref|XP_003543688.1| PREDICTED: topless-related protein 1-like [Glycine max]

 Score = 2000 bits (5181), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 969/1141 (84%), Positives = 1042/1141 (91%), Gaps = 44/1141 (3%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VE+YLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDKHDR+KAVEILVKDLKVF+TFNEELFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNS--------SLN 172
            LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFPNLKNS        SLN
Sbjct: 121  LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180

Query: 173  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 232
            WQHQLCKNPRPNPDIKTLFVDH+CGQPNGARAPSPANNPLLGSLPKAG FPPLGAHGPFQ
Sbjct: 181  WQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQ 240

Query: 233  PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGD 292
            PTPAPVPTPLAGWMSNP TV HPAVSGGAIGLG+PSIPAA LKHPRTPPTNPSVDYPSGD
Sbjct: 241  PTPAPVPTPLAGWMSNPTTVAHPAVSGGAIGLGAPSIPAA-LKHPRTPPTNPSVDYPSGD 299

Query: 293  SDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSS 352
            SDH+SKRTRPIG+SDE+NLPVNVL  +F GH H     QAF+ P+DLPKT  R+LNQGSS
Sbjct: 300  SDHVSKRTRPIGMSDEVNLPVNVLSATFPGHGHG----QAFNAPDDLPKTAMRSLNQGSS 355

Query: 353  PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 412
            PMSMDFHPVQQTLLLVGTNVGDI LWEVGSRERL++RNFKVWDL ACSMP QAALVKDPG
Sbjct: 356  PMSMDFHPVQQTLLLVGTNVGDIALWEVGSRERLLMRNFKVWDLSACSMPFQAALVKDPG 415

Query: 413  VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 472
            VSVNRVIWSPDG+LFGVAYSRHIVQIYSYHGGD+V QHLEIDAHVGGVND+AFSHPNKQL
Sbjct: 416  VSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGDDVGQHLEIDAHVGGVNDLAFSHPNKQL 475

Query: 473  CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 532
            CVITCGDDKTIKVWDA  GAKQY FEGHEAPVYS+CPH+KENIQFIFSTALDGKIKAWLY
Sbjct: 476  CVITCGDDKTIKVWDAATGAKQYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWLY 535

Query: 533  DNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQGFRK 566
            DNLGSRVDYEAPGRWCTTMAYSADGTR                          TYQGFRK
Sbjct: 536  DNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKEGESSIVEWNESEGAVKRTYQGFRK 595

Query: 567  RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA 626
            RSLGVVQFDTTKNR+LAAGDDFSIKFWDMD++QLLT++DADGGLPASPRIRFNKDG LLA
Sbjct: 596  RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTVDADGGLPASPRIRFNKDGALLA 655

Query: 627  VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN-SKPTISPISAAAAAAATSAGLAD 685
            VS N+NGIKILA +DGIRLLRT EN  YD SRTSE  +KPTI+PISAAAAAA ++A LA+
Sbjct: 656  VSANENGIKILANADGIRLLRTLENSLYDTSRTSEAMTKPTINPISAAAAAATSAA-LAE 714

Query: 686  RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK 745
            RA+S+V+I  MNGD R+L DVKPRI+EESNDKSK+WKLTE++EP+QCRSL+LPEN+R  K
Sbjct: 715  RASSVVAITAMNGDARNLGDVKPRISEESNDKSKIWKLTEINEPSQCRSLKLPENVRVNK 774

Query: 746  ISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 805
            ISRLI+TNSGNAILALASNAIHLLWKWQR +RNS+GKATASV PQLWQP SGI+MTND+T
Sbjct: 775  ISRLIYTNSGNAILALASNAIHLLWKWQRNDRNSTGKATASVQPQLWQPSSGILMTNDIT 834

Query: 806  DSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN 865
            D+N E+AVPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFMPPPPAATFLAFHPQDNN
Sbjct: 835  DNNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNN 894

Query: 866  IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 925
            IIAIGMDDSSIQIYNVRVDEVKSKLKGH+KRITGLAFSH LNVLVSSGAD+Q+CVW++DG
Sbjct: 895  IIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQICVWNTDG 954

Query: 926  WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRE 985
            WEKQK+RFLQ+P GRTP AQ+DTRVQFHQDQI FLVVHETQLAI+E TKLEC+KQW PR+
Sbjct: 955  WEKQKSRFLQLPAGRTPPAQADTRVQFHQDQIRFLVVHETQLAIYEATKLECLKQWFPRD 1014

Query: 986  SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVI 1045
            SSAPI+HATFSCDSQL+YA FLDATVCV S +NL+LRCRINPSAYL A V SSNV PLVI
Sbjct: 1015 SSAPISHATFSCDSQLIYASFLDATVCVLSVSNLRLRCRINPSAYLSASV-SSNVQPLVI 1073

Query: 1046 AAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQ 1105
            AAHPQEPN+FA+GLSDGGVHVFEP ESEGKWGVPPP++NGSTS+M AT    G+ SD+AQ
Sbjct: 1074 AAHPQEPNQFAVGLSDGGVHVFEPHESEGKWGVPPPIENGSTSNMAATSV--GASSDEAQ 1131

Query: 1106 R 1106
            R
Sbjct: 1132 R 1132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463556|ref|XP_002268265.1| PREDICTED: protein TOPLESS [Vitis vinifera] gi|297743564|emb|CBI36431.3| unnamed protein product [Vitis vinifera]

 Score = 1998 bits (5175), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 975/1145 (85%), Positives = 1045/1145 (91%), Gaps = 46/1145 (4%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVH+GNWD+VEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHSGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDKHDR+KAVEILVKDLKVF+TFNEELFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNS--------SLN 172
            LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFP+LKNS        SLN
Sbjct: 121  LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPHLKNSRLRTLINQSLN 180

Query: 173  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 232
            WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAG FPPLGAHGPFQ
Sbjct: 181  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQ 240

Query: 233  PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGD 292
            PTPAPVPTPL  WMSNP TVTHPAVSGG IGLG+PSIPAA LKHPRTPPTNPSVDYPSGD
Sbjct: 241  PTPAPVPTPL--WMSNPSTVTHPAVSGGPIGLGAPSIPAA-LKHPRTPPTNPSVDYPSGD 297

Query: 293  SDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSS 352
            S+H++KR RP+GISDE+NLPVNVLPV+F GH HS    QAF+ P+DLPKT+ R L QGSS
Sbjct: 298  SEHVAKRGRPMGISDEVNLPVNVLPVTFPGHGHS----QAFNAPDDLPKTLVRNLTQGSS 353

Query: 353  PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 412
            PMSMDFHPVQQTLLLVGTNVGDIGLWEVGS+++LV RNFKVWD+GACS+PLQAAL KDPG
Sbjct: 354  PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSKQKLVSRNFKVWDIGACSVPLQAALAKDPG 413

Query: 413  VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 472
            VSVNR+IWSPDGSLFGVAYSRHIVQIYSYHGGD+VRQHLEIDAH GGVND+AFSHPNKQL
Sbjct: 414  VSVNRIIWSPDGSLFGVAYSRHIVQIYSYHGGDDVRQHLEIDAHAGGVNDLAFSHPNKQL 473

Query: 473  CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 532
            CVITCGDDKTIKVWDATNG KQY FEGHE  VYSVCPH+KENIQFIFSTALDGKIKAWLY
Sbjct: 474  CVITCGDDKTIKVWDATNGTKQYTFEGHEDAVYSVCPHYKENIQFIFSTALDGKIKAWLY 533

Query: 533  DNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQGFRK 566
            DNLGSRVDY+APGRWCTTMAYSADGTR                          TYQGFRK
Sbjct: 534  DNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGDSYIVEWNESEGAVKRTYQGFRK 593

Query: 567  RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP---ASPRIRFNKDGC 623
            RSLGVVQFDTTKNRFLAAGDDFSIKFWDMD++QLLT +DA+GGLP   ASPRIRFNKDG 
Sbjct: 594  RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNIQLLTILDAEGGLPGLPASPRIRFNKDGT 653

Query: 624  LLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN-SKPTISPISAAAAAAATSA- 681
            LLAVS N+N IKILA SDG+RLLRTF+NL+YDASR SE+ +KP I+ ISAAAAAAA ++ 
Sbjct: 654  LLAVSANENSIKILANSDGLRLLRTFDNLSYDASRASESVTKPAINSISAAAAAAAATSA 713

Query: 682  GLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL 741
            GLADR AS+V+I GMNGD R++ DVKPR+ EE+NDKSK+WKLTE++E +QCRSLRL ENL
Sbjct: 714  GLADRGASVVAIAGMNGDARNMGDVKPRLAEETNDKSKIWKLTEINETSQCRSLRLQENL 773

Query: 742  RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 801
            R TKISRLI+TNSGNAILALASNAIH LWKWQR +RNSSGKATA+V+PQLWQP SGI+MT
Sbjct: 774  RITKISRLIYTNSGNAILALASNAIHFLWKWQRNDRNSSGKATATVSPQLWQPTSGILMT 833

Query: 802  NDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHP 861
            NDV D+NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFMPPPPAATFLAFHP
Sbjct: 834  NDVADTNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHP 893

Query: 862  QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 921
            QDNNIIAIGMDDS+IQIYNVRVDEVKSKLKGHSKRITGLAFSH LNVLVSSGAD+QLCVW
Sbjct: 894  QDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSHVLNVLVSSGADAQLCVW 953

Query: 922  SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQW 981
            SSDGWEKQK+RFLQ+P GRT T QSDTRVQFHQDQ HFLVVHETQLAI+E TKL+CVKQW
Sbjct: 954  SSDGWEKQKSRFLQVPAGRTSTGQSDTRVQFHQDQTHFLVVHETQLAIYEATKLDCVKQW 1013

Query: 982  VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVH 1041
            V RE++API+HATFSCDS LVYA FLDATVCVFSAANL+LRCRINP+AYLPA VS+SNVH
Sbjct: 1014 VQREAAAPISHATFSCDSLLVYASFLDATVCVFSAANLRLRCRINPTAYLPASVSNSNVH 1073

Query: 1042 PLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGS 1101
            PLVIAAHPQEPN+FALGLSDGGV VFEPLESEGKWGVPPPV+NGS SS+PATP VG SGS
Sbjct: 1074 PLVIAAHPQEPNQFALGLSDGGVCVFEPLESEGKWGVPPPVENGSASSVPATPSVGPSGS 1133

Query: 1102 DQAQR 1106
            DQ QR
Sbjct: 1134 DQPQR 1138

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526242|ref|XP_003531727.1| PREDICTED: protein TOPLESS-like [Glycine max]

 Score = 1993 bits (5163), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 972/1142 (85%), Positives = 1046/1142 (91%), Gaps = 45/1142 (3%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDKHDR+KAVEILVKDLKVF+TFNEELFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNS--------SLN 172
            LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFPNLKNS        SLN
Sbjct: 121  LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180

Query: 173  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 232
            WQHQLCKNPRPNPDIKTLFVDH+CGQPNGARAPSPANNPLLG+LPKAG FPPLGAHGPFQ
Sbjct: 181  WQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGALPKAGGFPPLGAHGPFQ 240

Query: 233  PTPAPVPTPLAGWMSNPPTVTHPAVSGG-AIGLGSPSIPAAALKHPRTPPTNPSVDYPSG 291
            PTPAPVPTPLAGWMSNP TV H AVSGG AIGLG+PS+PAA LKHPRTPPTNPSVDYPSG
Sbjct: 241  PTPAPVPTPLAGWMSNPTTVAHAAVSGGGAIGLGAPSMPAA-LKHPRTPPTNPSVDYPSG 299

Query: 292  DSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGS 351
            DSDH++KRTRP+GISDE+NLPVNVL  +F GH     HSQAF+ P+D+PKTV RTLNQGS
Sbjct: 300  DSDHVAKRTRPMGISDEVNLPVNVLSATFPGHGQ---HSQAFNAPDDIPKTVVRTLNQGS 356

Query: 352  SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP 411
            SPMSMDFHP+QQ+LLLVGT+VGDI LWEVGSRERLV RNFKVWDL ACSMP QAALVKDP
Sbjct: 357  SPMSMDFHPMQQSLLLVGTHVGDIALWEVGSRERLVSRNFKVWDLSACSMPFQAALVKDP 416

Query: 412  GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ 471
            GVSVNRVIWSPDG+LFGVAYSRHIVQIYSYHGGDE+RQHLEIDAHVGGVND+AFSHPNKQ
Sbjct: 417  GVSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGDEIRQHLEIDAHVGGVNDLAFSHPNKQ 476

Query: 472  LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL 531
            LCVITCGDDKTIKVWDA +GAKQY FEGHEAPVYSVCPH+KENIQFIFSTALDGKIKAWL
Sbjct: 477  LCVITCGDDKTIKVWDAASGAKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWL 536

Query: 532  YDNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQGFR 565
            YDNLGSRVDYEAPGRWCTTMAYSADGTR                          TYQGFR
Sbjct: 537  YDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQGFR 596

Query: 566  KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL 625
            KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD+VQLLT++DADGGLPASPRIRFNKDG LL
Sbjct: 597  KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTVDADGGLPASPRIRFNKDGTLL 656

Query: 626  AVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN-SKPTISPISAAAAAAATSAGLA 684
            AVS N+NGIKILA  DGIRLLRT EN  Y+ASR SE  +KPTI+PISAAAAAA ++A LA
Sbjct: 657  AVSANENGIKILANGDGIRLLRTLENSLYEASRASEALTKPTINPISAAAAAATSAA-LA 715

Query: 685  DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 744
            +RA+S+V+I GMNGD R+L DVKPRI+EESNDKSK+WKLTE++E +QCRSL+LPEN+R T
Sbjct: 716  ERASSVVAIAGMNGDTRNLGDVKPRISEESNDKSKIWKLTEINEQSQCRSLKLPENVRVT 775

Query: 745  KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 804
            KISRLI+TNSGNAILALASNAIHLLWKWQR ERNSSGKATA++ PQLWQP SGI+MTND+
Sbjct: 776  KISRLIYTNSGNAILALASNAIHLLWKWQRNERNSSGKATATLQPQLWQPSSGILMTNDI 835

Query: 805  TDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDN 864
             DSNPE+AVPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFMPPPPAATFLAFHPQDN
Sbjct: 836  ADSNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDN 895

Query: 865  NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 924
            NIIAIGMDDSSIQIYNVRVDEVKSKLKGH+KRITGLAFSH LNVLVSSGAD+Q+CVW++D
Sbjct: 896  NIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQICVWNTD 955

Query: 925  GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPR 984
            GWEKQK+RFLQ+P GRTP AQSDTRVQFHQDQI FLVVHETQLAI+E TKLE +KQW PR
Sbjct: 956  GWEKQKSRFLQLPPGRTPPAQSDTRVQFHQDQIQFLVVHETQLAIYEATKLEGLKQWFPR 1015

Query: 985  ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLV 1044
            +SSAPI++ATFSCDSQLV+A FLDAT+CVFSA+NL+LRCRINPS+YLPA V SSN+ PLV
Sbjct: 1016 DSSAPISYATFSCDSQLVFASFLDATICVFSASNLRLRCRINPSSYLPASV-SSNIQPLV 1074

Query: 1045 IAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQA 1104
            IAAHPQEPN+FALGLSDGGVHVFEPLESEGKWGVPPP++NGS S++ AT  VG   SDQA
Sbjct: 1075 IAAHPQEPNQFALGLSDGGVHVFEPLESEGKWGVPPPIENGSASNVAAT-SVG--PSDQA 1131

Query: 1105 QR 1106
            QR
Sbjct: 1132 QR 1133

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517721|ref|XP_004165893.1| PREDICTED: LOW QUALITY PROTEIN: protein TOPLESS-like [Cucumis sativus]

 Score = 1991 bits (5158), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 964/1144 (84%), Positives = 1045/1144 (91%), Gaps = 43/1144 (3%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDKHDR+KAV+ILVKDLKVF TFNEELFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVDILVKDLKVFXTFNEELFKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNS--------SLN 172
            LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFP+LKNS        SLN
Sbjct: 121  LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPHLKNSRLRTLINQSLN 180

Query: 173  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 232
            WQHQLCKNPRPNPDIKTLFVDH+CGQPNGARAPSPANNPLLGSLPK G FPPLGAHGPFQ
Sbjct: 181  WQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKPGGFPPLGAHGPFQ 240

Query: 233  PTPAPVPTPLAGWMSNPPTVTHPAVSGG-AIGLGSPSIPAAALKHPRTPPTNPSVDYPSG 291
            PT APVP PLAGWMSNP  VTHPAVSGG AIGLG+PSIPAA LKHPRTPPTNPSV+YPS 
Sbjct: 241  PTAAPVPAPLAGWMSNPSAVTHPAVSGGGAIGLGAPSIPAA-LKHPRTPPTNPSVEYPSA 299

Query: 292  DSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGS 351
            DSDH+SKR +P+G+SDE+NLPVNVLPVSFTGH H+    Q F+ P+DLPKTV RTLNQGS
Sbjct: 300  DSDHVSKRPKPMGMSDEVNLPVNVLPVSFTGHGHA----QTFNAPDDLPKTVMRTLNQGS 355

Query: 352  SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP 411
            +PMSMDFHP+QQTLLLVGTNVG+IGLWEVGSRERLV +NFKVWDL ACSMPLQAALVK+P
Sbjct: 356  NPMSMDFHPIQQTLLLVGTNVGEIGLWEVGSRERLVSKNFKVWDLNACSMPLQAALVKEP 415

Query: 412  GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ 471
             VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD++RQHLEIDAHVGGVND+AFS+PNKQ
Sbjct: 416  DVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDDMRQHLEIDAHVGGVNDLAFSNPNKQ 475

Query: 472  LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL 531
            LCVITCGDDKTIKVWDA NGA+QYIFEGHEAPV+SVCPH+KENIQFIFSTALDGKIKAWL
Sbjct: 476  LCVITCGDDKTIKVWDAGNGARQYIFEGHEAPVFSVCPHYKENIQFIFSTALDGKIKAWL 535

Query: 532  YDNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQGFR 565
            YDN+GSRVDY+APGRWCTTMAYSADGTR                          TYQGFR
Sbjct: 536  YDNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGDSYIVEWNESEGAVKRTYQGFR 595

Query: 566  KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL 625
            KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD+VQLLT++DADGGLPASPRIRFNKDG LL
Sbjct: 596  KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTVDADGGLPASPRIRFNKDGTLL 655

Query: 626  AVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE-NSKPTISPISAAAAAAATSAGLA 684
            AVS N+NGIKILA  DGIRLLRTFENL+YDA+RTSE  +KPTI+PISAAAA AA +A  +
Sbjct: 656  AVSGNENGIKILANVDGIRLLRTFENLSYDAARTSEAGTKPTINPISAAAAVAAAAAAGS 715

Query: 685  --DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLR 742
              DR AS+V++ G+ GD RSL DVKPRI E+SNDKSK+WKLTE++EP+QCRSLRLPEN+R
Sbjct: 716  AADRGASVVTMSGVAGDSRSLGDVKPRIPEDSNDKSKIWKLTEINEPSQCRSLRLPENVR 775

Query: 743  ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 802
              KISRLI+TNSG+AILALASNAIHLLWKW R+ERNS+GKATA+V PQLWQP SGI+MTN
Sbjct: 776  VNKISRLIYTNSGSAILALASNAIHLLWKWTRSERNSTGKATANVLPQLWQPSSGILMTN 835

Query: 803  DVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ 862
            DV D++ EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFMPPPPAATFLAFHPQ
Sbjct: 836  DVADTSSEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQ 895

Query: 863  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
            DNNIIAIGMDDS+IQIYNVRVDEVKSKLKGHSKRITGLAFSH LNVLVSSGAD+QLCVWS
Sbjct: 896  DNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSHLLNVLVSSGADAQLCVWS 955

Query: 923  SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 982
            SD WEKQK RFLQ+P+GR P++QSDTRVQFHQDQ+HFLVVHETQ+AI+ETTKLECVKQW 
Sbjct: 956  SDVWEKQKTRFLQLPSGRPPSSQSDTRVQFHQDQVHFLVVHETQIAIYETTKLECVKQWT 1015

Query: 983  PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHP 1042
            PRES API+HATFSCDSQ++YA FLDATVCVF+ A+L+LRCRI+PSAYLPA VS+++V P
Sbjct: 1016 PRESGAPISHATFSCDSQMIYASFLDATVCVFTVASLRLRCRISPSAYLPASVSNASVQP 1075

Query: 1043 LVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSD 1102
            LVIAAHPQE N+FALGLSDGGVHVFEPLESEGKWGVPPPV+NGS SS+P TP VG SGS+
Sbjct: 1076 LVIAAHPQEANQFALGLSDGGVHVFEPLESEGKWGVPPPVENGSASSVPTTPSVGASGSE 1135

Query: 1103 QAQR 1106
            QA R
Sbjct: 1136 QAPR 1139

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468952|ref|XP_004152185.1| PREDICTED: protein TOPLESS-like [Cucumis sativus]

 Score = 1991 bits (5157), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 964/1144 (84%), Positives = 1046/1144 (91%), Gaps = 43/1144 (3%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDKHDR+KAV+ILVKDLKVFSTFNEELFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVDILVKDLKVFSTFNEELFKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNS--------SLN 172
            LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFP+LKNS        SLN
Sbjct: 121  LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPHLKNSRLRTLINQSLN 180

Query: 173  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 232
            WQHQLCKNPRPNPDIKTLFVDH+CGQPNGARAPSPANNPLLGSLPK G FPPLGAHGPFQ
Sbjct: 181  WQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKPGGFPPLGAHGPFQ 240

Query: 233  PTPAPVPTPLAGWMSNPPTVTHPAVSGG-AIGLGSPSIPAAALKHPRTPPTNPSVDYPSG 291
            PT APVP PLAGWMSNP  VTHPAVSGG AIGLG+PSIPAA LKHPRTPPTNPSV+YPS 
Sbjct: 241  PTAAPVPAPLAGWMSNPSAVTHPAVSGGGAIGLGAPSIPAA-LKHPRTPPTNPSVEYPSA 299

Query: 292  DSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGS 351
            DSDH+SKR +P+G+SDE+NLPVNVLPVSFTGH H+    Q F+ P+DLPKTV RTLNQGS
Sbjct: 300  DSDHVSKRPKPMGMSDEVNLPVNVLPVSFTGHGHA----QNFNAPDDLPKTVMRTLNQGS 355

Query: 352  SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP 411
            +PMSMDFHP+QQTLLLVGT+VG+IGLWEVGSRERLV +NFKVWDL ACSMPLQAALVK+P
Sbjct: 356  NPMSMDFHPIQQTLLLVGTDVGEIGLWEVGSRERLVSKNFKVWDLNACSMPLQAALVKEP 415

Query: 412  GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ 471
             VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD++RQHLEIDAHVGGVND+AFS+PNKQ
Sbjct: 416  DVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDDMRQHLEIDAHVGGVNDLAFSNPNKQ 475

Query: 472  LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL 531
            LCVITCGDDKTIKVWDA NGA+QYIFEGHEAPV+SVCPH+KENIQFIFSTALDGKIKAWL
Sbjct: 476  LCVITCGDDKTIKVWDAGNGARQYIFEGHEAPVFSVCPHYKENIQFIFSTALDGKIKAWL 535

Query: 532  YDNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQGFR 565
            YDN+GSRVDY+APGRWCTTMAYSADGTR                          TYQGFR
Sbjct: 536  YDNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGDSYIVEWNESEGAVKRTYQGFR 595

Query: 566  KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL 625
            KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD+VQLLT++DADGGLPASPRIRFNKDG LL
Sbjct: 596  KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTVDADGGLPASPRIRFNKDGTLL 655

Query: 626  AVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE-NSKPTISPISAAAAAAATSAGLA 684
            AVS N+NGIKILA  DGIRLLRTFENL+YDA+RTSE  +KPTI+PISAAAA AA +A  +
Sbjct: 656  AVSGNENGIKILANVDGIRLLRTFENLSYDAARTSEAGTKPTINPISAAAAVAAAAAAGS 715

Query: 685  --DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLR 742
              DR AS+V++ G+ GD RSL DVKPRI E+SNDKSK+WKLTE++EP+QCRSLRLPEN+R
Sbjct: 716  AADRGASVVTMSGVAGDSRSLGDVKPRIPEDSNDKSKIWKLTEINEPSQCRSLRLPENVR 775

Query: 743  ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 802
              KISRLI+TNSG+AILALASNAIHLLWKW R+ERNS+GKATA+V PQLWQP SGI+MTN
Sbjct: 776  VNKISRLIYTNSGSAILALASNAIHLLWKWTRSERNSTGKATANVLPQLWQPSSGILMTN 835

Query: 803  DVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ 862
            DV D++ EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFMPPPPAATFLAFHPQ
Sbjct: 836  DVADTSSEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQ 895

Query: 863  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
            DNNIIAIGMDDS+IQIYNVRVDEVKSKLKGHSKRITGLAFSH LNVLVSSGAD+QLCVWS
Sbjct: 896  DNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSHLLNVLVSSGADAQLCVWS 955

Query: 923  SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 982
            SD WEKQK RFLQ+P+GR P++QSDTRVQFHQDQ+HFLVVHETQ+AI+ETTKLECVKQW 
Sbjct: 956  SDVWEKQKTRFLQLPSGRPPSSQSDTRVQFHQDQVHFLVVHETQIAIYETTKLECVKQWT 1015

Query: 983  PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHP 1042
            PRES API+HATFSCDSQ++YA FLDATVCVF+ A+L+LRCRI+PSAYLPA VS+++V P
Sbjct: 1016 PRESGAPISHATFSCDSQMIYASFLDATVCVFTVASLRLRCRISPSAYLPASVSNASVQP 1075

Query: 1043 LVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSD 1102
            LVIAAHPQE N+FALGLSDGGVHVFEPLESEGKWGVPPPV+NGS SS+P TP VG SGS+
Sbjct: 1076 LVIAAHPQEANQFALGLSDGGVHVFEPLESEGKWGVPPPVENGSASSVPTTPSVGASGSE 1135

Query: 1103 QAQR 1106
            QA R
Sbjct: 1136 QAPR 1139

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553317|ref|XP_002517701.1| WD-repeat protein, putative [Ricinus communis] gi|223543333|gb|EEF44865.1| WD-repeat protein, putative [Ricinus communis]

 Score = 1977 bits (5122), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 966/1142 (84%), Positives = 1026/1142 (89%), Gaps = 63/1142 (5%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVH+GNWD+VEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHSGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDKHDR+KAV+ILVKDLKVF+TFNEELFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVDILVKDLKVFATFNEELFKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNS--------SLN 172
            LENFRENEQLSKYGDTKSAR+IML                  FPNLKNS        SLN
Sbjct: 121  LENFRENEQLSKYGDTKSARAIML------------------FPNLKNSRLRTLINQSLN 162

Query: 173  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 232
            WQHQLCKNPRPNPDIKTLFVDH+CGQPNGARAPSPANNPLLGSLPKAG FPPLGAHGPFQ
Sbjct: 163  WQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQ 222

Query: 233  PTPAPVPTPLAGWMSNPPTVTHPAVSGG-AIGLGSPSIPAAALKHPRTPPTNPSVDYPSG 291
            PTPAPVP PLAGWMSNP  VTHPAVSGG AIGLG+PSIPAA LKHPRTPPTNPSVDYPSG
Sbjct: 223  PTPAPVPAPLAGWMSNPSAVTHPAVSGGGAIGLGAPSIPAA-LKHPRTPPTNPSVDYPSG 281

Query: 292  DSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGS 351
            DSDH++KRTRP+GISDE+NLPVNVLPVSF GH H     Q F+ P+DLPKTV+RTLNQGS
Sbjct: 282  DSDHVAKRTRPMGISDEVNLPVNVLPVSFPGHGHG----QNFNAPDDLPKTVSRTLNQGS 337

Query: 352  SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP 411
            SPMSMDFHP++QTLLLVGTNVGD+ LWEVGSRERL+LRNFKVWD+  CSMPLQAALVKDP
Sbjct: 338  SPMSMDFHPLEQTLLLVGTNVGDVALWEVGSRERLMLRNFKVWDISTCSMPLQAALVKDP 397

Query: 412  GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ 471
            GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYH GD+VRQHLEIDAHVGGVND+AFS PNKQ
Sbjct: 398  GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHRGDDVRQHLEIDAHVGGVNDLAFSTPNKQ 457

Query: 472  LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL 531
            LCVITCGDDKTIKVWDA  G +QY FEGHEAPVYSVCPH+KENIQFIFSTALDGKIKAWL
Sbjct: 458  LCVITCGDDKTIKVWDAATGTRQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWL 517

Query: 532  YDNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQGFR 565
            YDNLGSRVDYEAPGRWCTTMAYSADGTR                          +YQGFR
Sbjct: 518  YDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESHIVEWNESEGNVKRSYQGFR 577

Query: 566  KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL 625
            KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD++QLLTSIDADGGLPASPRIRFNKDG LL
Sbjct: 578  KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNLQLLTSIDADGGLPASPRIRFNKDGSLL 637

Query: 626  AVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN-SKPTISPISAAAAAAATSAGLA 684
            AVS N+NGIKILA SDG RLLRTFENL+YDASR SE  +KP I+PISAAAA +A  A   
Sbjct: 638  AVSANENGIKILANSDGHRLLRTFENLSYDASRASEAVTKPIINPISAAAATSAGLA--- 694

Query: 685  DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 744
            DR AS+V+IPGMNGD R++ DVKPRITEESNDKSK+WKLTE++EP QCRSLRLP+NLR  
Sbjct: 695  DRTASVVTIPGMNGDARNMGDVKPRITEESNDKSKIWKLTEINEPTQCRSLRLPDNLRVN 754

Query: 745  KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 804
            KISRLI+TNSGNAILALASNAIHLLWKWQR+ERNS+GKATA+V+PQLWQP SGI+MTND+
Sbjct: 755  KISRLIYTNSGNAILALASNAIHLLWKWQRSERNSTGKATANVSPQLWQPSSGILMTNDI 814

Query: 805  TDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDN 864
            TD+NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFMPPPPAATFLAFHPQDN
Sbjct: 815  TDTNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDN 874

Query: 865  NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 924
            NIIAIGMDDS+IQIYNVRVDEVKSKLKGHSKRITGLAFSH LNVLVSSGAD+QLCVW+SD
Sbjct: 875  NIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSHVLNVLVSSGADAQLCVWNSD 934

Query: 925  GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPR 984
            GWEKQK RFLQ+P GRT T QSDTRVQFHQDQI FLVVHETQLAI+E TKLEC KQWV R
Sbjct: 935  GWEKQKTRFLQVPPGRTTTGQSDTRVQFHQDQIQFLVVHETQLAIYEATKLECTKQWVTR 994

Query: 985  ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLV 1044
            ESSAPI+HATFSCDSQLVYA FLDATVCVFSA NL+LRCRINPS+YL A VSSS +HPLV
Sbjct: 995  ESSAPISHATFSCDSQLVYASFLDATVCVFSAQNLRLRCRINPSSYLSANVSSS-LHPLV 1053

Query: 1045 IAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQA 1104
            IAAHPQEPN+FALGLSDGGVHVFEPLESEGKWGVPPP +NGS SS+PATP VG SGSDQA
Sbjct: 1054 IAAHPQEPNQFALGLSDGGVHVFEPLESEGKWGVPPPAENGSASSVPATPSVGPSGSDQA 1113

Query: 1105 QR 1106
            QR
Sbjct: 1114 QR 1115

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357458875|ref|XP_003599718.1| WD repeat-containing protein, putative [Medicago truncatula] gi|357468121|ref|XP_003604345.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355488766|gb|AES69969.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355505400|gb|AES86542.1| WD repeat-containing protein, putative [Medicago truncatula]

 Score = 1959 bits (5075), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 957/1145 (83%), Positives = 1030/1145 (89%), Gaps = 46/1145 (4%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDKHDR+KAVEILVKDLKVF+TFNEELFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNS--------SLN 172
            LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFPNLKNS        SLN
Sbjct: 121  LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180

Query: 173  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 232
            WQHQLCKNPRPNPDIKTLFVDH+CGQPNGARAPSPAN+PLLGSLPKAG FPPLGAHGPFQ
Sbjct: 181  WQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANSPLLGSLPKAGGFPPLGAHGPFQ 240

Query: 233  PTPAPVPTPLAGWMSNPPTVTHPAVSG-GAIGLGSPSIPAAALKHPRTPPTNPSVDYPSG 291
            P PA VPT LAGWMSNP TV H AVSG GAIGLG+PS+P A LKHPRTPP NPSVDYPSG
Sbjct: 241  PNPAAVPTQLAGWMSNPTTVAHAAVSGAGAIGLGAPSMPGA-LKHPRTPPINPSVDYPSG 299

Query: 292  DSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLP--KTVTRTLNQ 349
            DSDH++KRTRP+GI+DE+NLPVNVL  +F GH HS    QAF+ P+DLP  KTVTRTLNQ
Sbjct: 300  DSDHVAKRTRPMGITDEVNLPVNVLSGTFPGHGHS----QAFNAPDDLPLPKTVTRTLNQ 355

Query: 350  GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVK 409
            GSSPMSMDFHPVQQ+LLLVGTNVG I LWEVGSRE+LV RNFKVWDL ACSMP QAALVK
Sbjct: 356  GSSPMSMDFHPVQQSLLLVGTNVGGIALWEVGSREKLVSRNFKVWDLSACSMPFQAALVK 415

Query: 410  DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPN 469
            DP VSVNRVIWSPDG+LFGVAYSRHIVQIYSYH GD+VRQHLEIDAHVGGVND+AFSHPN
Sbjct: 416  DPSVSVNRVIWSPDGALFGVAYSRHIVQIYSYHTGDDVRQHLEIDAHVGGVNDLAFSHPN 475

Query: 470  KQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 529
            KQLCVITCGDDKTIKVWDA +GAKQY FEGHEAPVYSVCPH+KENIQFIFSTALDGKIKA
Sbjct: 476  KQLCVITCGDDKTIKVWDAVSGAKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKA 535

Query: 530  WLYDNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQG 563
            WLYDNLGSRVDY+APGRWCTTMAYSADGTR                          TYQG
Sbjct: 536  WLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQG 595

Query: 564  FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC 623
            FRKRS+GVVQFDTTKNRFLAAGDDFSIKFWDMD++QLLT++DADGGLPASPRIRFNKDG 
Sbjct: 596  FRKRSMGVVQFDTTKNRFLAAGDDFSIKFWDMDNIQLLTTVDADGGLPASPRIRFNKDGT 655

Query: 624  LLAVSTNDNGIKILATSDGIRLLRTFENLA-YDASRTSENSKPTISPISAAAAAAATSAG 682
            LLAVS NDNGIKI+A +DGIRLLRT EN + YDASR SE +KPTI+  S ++AAAATSA 
Sbjct: 656  LLAVSANDNGIKIVANADGIRLLRTLENNSMYDASRASEMAKPTIN--SMSSAAAATSAA 713

Query: 683  LADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLR 742
            LA+RA+S+ +I GMNGD RS+ DVKPRI+EE+NDKSK+WKLTE++EP+ CRSL+LPEN+R
Sbjct: 714  LAERASSVAAIAGMNGDTRSMGDVKPRISEEANDKSKIWKLTEINEPSHCRSLKLPENVR 773

Query: 743  ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 802
              KISRLI+TNSGNAILALASNAIHLLWKW R ERNSSGKA ASV  QLWQP SGI+MTN
Sbjct: 774  VNKISRLIYTNSGNAILALASNAIHLLWKWPRNERNSSGKANASVPAQLWQPSSGILMTN 833

Query: 803  DVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ 862
            D+ DSNPE++VPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFMPPPPAATFLAFHPQ
Sbjct: 834  DIADSNPEDSVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQ 893

Query: 863  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
            DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH+KRITGLAFSH LNVLVSSGAD+Q+CVW+
Sbjct: 894  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQICVWN 953

Query: 923  SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 982
            +DGWEKQK RFLQ+P GRTP+AQSDTRVQFHQDQI FLVVHETQLAIFE TKLEC+KQW 
Sbjct: 954  TDGWEKQKTRFLQLPPGRTPSAQSDTRVQFHQDQIQFLVVHETQLAIFEATKLECLKQWA 1013

Query: 983  PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSS-SNVH 1041
            PR+SSAPI+HATFSCDSQL+YA FLDATVCVF+A+NL+LRCRINP AYLPA VSS SNV 
Sbjct: 1014 PRDSSAPISHATFSCDSQLIYASFLDATVCVFNASNLRLRCRINPPAYLPASVSSNSNVQ 1073

Query: 1042 PLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGS 1101
            PLVIAAHP E N+FA+GLSDGGVHVFEPLESEGKWGVPPP +NGS+S+  A     G  S
Sbjct: 1074 PLVIAAHPHEANQFAVGLSDGGVHVFEPLESEGKWGVPPPNENGSSSNNVAVATSVGLSS 1133

Query: 1102 DQAQR 1106
            DQAQR
Sbjct: 1134 DQAQR 1138

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554802|ref|XP_003545731.1| PREDICTED: topless-related protein 1-like isoform 1 [Glycine max]

 Score = 1956 bits (5067), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 953/1141 (83%), Positives = 1027/1141 (90%), Gaps = 40/1141 (3%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VE+YLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFE+ KQKYLEALDKHDR+KAVEILVKDLKVF+TFN+ELFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEVMKQKYLEALDKHDRSKAVEILVKDLKVFATFNDELFKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLK--------NSSLN 172
            LENFRENEQLSKY DTKSAR+IMLVELKKLIEANPLF DKLQFPNLK        N SLN
Sbjct: 121  LENFRENEQLSKYCDTKSARAIMLVELKKLIEANPLFHDKLQFPNLKSSRLRTLINQSLN 180

Query: 173  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 232
            WQHQLCKNPRPNPDIKTLFVDH+CGQ NGA APSPANN LLGSLPKAG FPPLGAHGPFQ
Sbjct: 181  WQHQLCKNPRPNPDIKTLFVDHSCGQLNGAPAPSPANNLLLGSLPKAGGFPPLGAHGPFQ 240

Query: 233  PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGD 292
            P+PAPVPTPLAGWMSNP TV HP VSGGAIGLG PSIPAA LKHPRTPPT PSVDYPSGD
Sbjct: 241  PSPAPVPTPLAGWMSNPTTVAHPEVSGGAIGLGVPSIPAA-LKHPRTPPTYPSVDYPSGD 299

Query: 293  SDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSS 352
            SDH+SKRTRP+G+SDE+NLPVNVL  +F GH H H H QAF+ P+DLPKT  RTLNQGSS
Sbjct: 300  SDHVSKRTRPMGMSDEVNLPVNVLSATFPGHGHGHGHGQAFNAPDDLPKTAMRTLNQGSS 359

Query: 353  PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 412
            PMSMDFHPVQQTLLLVGTNVGDI LWEVGSRERL++RNFKVWDL ACSMP QAALVKDPG
Sbjct: 360  PMSMDFHPVQQTLLLVGTNVGDIALWEVGSRERLLMRNFKVWDLSACSMPFQAALVKDPG 419

Query: 413  VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 472
            VSV RVIWSPDG+LFGVAYSRHIVQIYSYH GD+V+QHLEIDAHVGGVND+AFSHPNKQL
Sbjct: 420  VSVYRVIWSPDGALFGVAYSRHIVQIYSYHSGDDVQQHLEIDAHVGGVNDLAFSHPNKQL 479

Query: 473  CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 532
            CVITCGDDKTIKVWDA  GAKQY FEGHEAPVYSVCPH+KENIQFIFSTALDGKIKAWLY
Sbjct: 480  CVITCGDDKTIKVWDAATGAKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLY 539

Query: 533  DNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQGFRK 566
            DNLGSRVDYEAPGRWCTTMAYSADGTR                          TYQGFRK
Sbjct: 540  DNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDAESSIVEWNESEGAVKRTYQGFRK 599

Query: 567  RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA 626
            RSLG VQFDTTKNR+LAAGDDFSIKFWDMD++QLLT++DADGGLP SPRIRFNKDG LLA
Sbjct: 600  RSLGFVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTVDADGGLPGSPRIRFNKDGALLA 659

Query: 627  VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE-NSKPTISPISAAAAAAATSAGLAD 685
            VS  +NGIKILA +DGIRLLRT EN  YD SRTSE  +KPTI+PISAAAAAA ++A L +
Sbjct: 660  VSAKENGIKILANADGIRLLRTLENSLYDTSRTSEVMTKPTINPISAAAAAATSAA-LGE 718

Query: 686  RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK 745
            RA S+V I  MNGD R+L DVKPRI+EESNDKSK+WKLTE++EP+QCRSL+LPEN+R  K
Sbjct: 719  RALSVVGINAMNGDARNLGDVKPRISEESNDKSKIWKLTEINEPSQCRSLKLPENVRVNK 778

Query: 746  ISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 805
            ISRLI+TNSGNAILALASNAIHLLWKWQR +RNS+ KA+ASV PQLWQP SGI+MTND+T
Sbjct: 779  ISRLIYTNSGNAILALASNAIHLLWKWQRNDRNSTVKASASVQPQLWQPSSGILMTNDIT 838

Query: 806  DSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN 865
            DSN E+AVPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFMPPPPAA FLAFHPQDNN
Sbjct: 839  DSNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAANFLAFHPQDNN 898

Query: 866  IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 925
            IIAIGMDDSSIQIYNVRVDEVKSKLKGH+KRITGLAFSH LNVLVSSGAD+Q+CVW++DG
Sbjct: 899  IIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQICVWNTDG 958

Query: 926  WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRE 985
            WEKQK+RFLQ+P GRTP AQ+DTRVQFHQDQI FLVVHETQLAI+E TKLEC+KQW PR+
Sbjct: 959  WEKQKSRFLQLPAGRTPPAQADTRVQFHQDQIRFLVVHETQLAIYEATKLECLKQWFPRD 1018

Query: 986  SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVI 1045
            SSAPI+HATFSCDSQL+YA FLDATVCVFS +NL+L+CRINPSAYL A V SSNV PLVI
Sbjct: 1019 SSAPISHATFSCDSQLIYASFLDATVCVFSVSNLRLQCRINPSAYLSASV-SSNVQPLVI 1077

Query: 1046 AAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQ 1105
            AAHPQEPN+FA+GLSDGGVHVFEPLESEGKWGVPPP++NGSTS+M AT    G+ SD+AQ
Sbjct: 1078 AAHPQEPNQFAVGLSDGGVHVFEPLESEGKWGVPPPIENGSTSNMAATSV--GASSDEAQ 1135

Query: 1106 R 1106
            R
Sbjct: 1136 R 1136

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1106
TAIR|locus:2198888	1120	TPR1 "TOPLESS-related 1" [Arab	0.986	0.974	0.727	0.0
TAIR|locus:2036204	1131	TPL "TOPLESS" [Arabidopsis tha	0.504	0.493	0.840	0.0
TAIR|locus:2086770	1131	TPR2 "TOPLESS-related 2" [Arab	0.489	0.478	0.635	0.0
TAIR|locus:2040100	740	AT2G25420 "AT2G25420" [Arabido	0.326	0.487	0.371	5.8e-91
DICTYBASE|DDB_G0278353	530	smu1 "suppressor of mec-8 and	0.141	0.296	0.295	1.5e-14
DICTYBASE|DDB_G0287273	335	wdr5 "WD40 repeat-containing p	0.143	0.474	0.282	2.6e-12
TAIR|locus:2172432	523	AT5G43920 "AT5G43920" [Arabido	0.168	0.355	0.243	5.1e-11
TAIR|locus:2159562	589	AT5G08560 "AT5G08560" [Arabido	0.171	0.322	0.246	9.1e-11
FB|FBgn0036354	391	Poc1 "Proteome of centrioles 1	0.067	0.191	0.307	3.3e-10
ASPGD|ASPL0000006405	1878	AN6960 [Emericella nidulans (t	0.140	0.082	0.281	3.1e-05

TAIR|locus:2198888 TPR1 "TOPLESS-related 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 4198 (1482.8 bits), Expect = 0., P = 0.
 Identities = 826/1135 (72%), Positives = 919/1135 (80%)

Query:     1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
             MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct:     1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query:    61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
             TKVDDNRYSMKIFFEIRKQKYLEALD+HDR KAV+ILVKDLKVFSTFNEELFKEITQLLT
Sbjct:    61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120

Query:   121 LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLK--------NSSLN 172
             LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFP L+        N SLN
Sbjct:   121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTSRLRTLINQSLN 180

Query:   173 WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGXXX 232
             WQHQLCKNPRPNPDIKTLFVDH+C  PN ARAPSP NNPLLGSLPKA  FPPLGAHG   
Sbjct:   181 WQHQLCKNPRPNPDIKTLFVDHSCRLPNDARAPSPVNNPLLGSLPKAEGFPPLGAHGPFQ 240

Query:   233 XXXXXXXXXLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGD 292
                      LAGWMS+P +V HPAVSGG I LG+PSI AA LKHPRTPP+N +VDYPSGD
Sbjct:   241 PTPSPVPTPLAGWMSSPSSVPHPAVSGGPIALGAPSIQAA-LKHPRTPPSNSAVDYPSGD 299

Query:   293 SDHLSKRTRPIGISDEINLPVNVLPVSFTGXXXXXXXXQAFSTPEDLPKTVTRTLNQGSS 352
             SDH+SKRTRP+GISDE++L VN+LP++F G        Q F  P+DLPKTV RTL+QGSS
Sbjct:   300 SDHVSKRTRPMGISDEVSLGVNMLPMTFPGQAHGHN--QTFKAPDDLPKTVARTLSQGSS 357

Query:   353 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 412
             PMSMDFHP++QTLLLVGTNVGDIGLWEVGSRERLV + FKVWDL  CSMPLQAALVK+P 
Sbjct:   358 PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417

Query:   413 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 472
             VSVNRVIWSPDGSLFGVAYSRHIVQ+YSYHGG+++RQHLEIDAHVGGVNDIAFS PNKQL
Sbjct:   418 VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDIAFSTPNKQL 477

Query:   473 CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 532
             CV TCGDDKTIKVWDA  G K+Y FEGHEAPVYS+CPH+KENIQFIFSTALDGKIKAWLY
Sbjct:   478 CVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWLY 537

Query:   533 DNLGSRVDYEAPGRWCTTMAYSADGTRTYQ-GFRKRSLG-VVQFDTTKNRFLAAGDDF-- 588
             DN+GSRVDYEAPGRWCTTMAYSADGTR +  G  K     +V+++ ++         F  
Sbjct:   538 DNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHK 597

Query:   589 -SIKFWDMDSVQ---LLTSIDADGGLPASPRIRF----NKDGCLLA---VSTNDNGIKIL 637
              S+     D+ +   L    D          I+     + DG L A   +  N  G  +L
Sbjct:   598 RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGGLQASPRIRFNKEG-SLL 656

Query:   638 ATSDGIRLLRTFEN-----LAYDASR-TSENSKPTISPIXXXXXXXXXXXXXXXXXXXMV 691
             A S    +++   N     L +     +SE+SKP I+ I                   +V
Sbjct:   657 AVSANDNMIKVMANSDGLRLLHTVENLSSESSKPAINSIPMVERPAS-----------VV 705

Query:   692 SIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIF 751
             SIPGMNGD R++ DVKP ITEESNDKSKVWKLTE+ EP+QCRSLRLPEN+R TKISRLIF
Sbjct:   706 SIPGMNGDSRNMVDVKPVITEESNDKSKVWKLTEVGEPSQCRSLRLPENMRVTKISRLIF 765

Query:   752 TNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE 811
             TNSGNAILALASNAIHLLWKWQR +RN++GKATAS+ PQ WQP SGI+MTNDV ++NPEE
Sbjct:   766 TNSGNAILALASNAIHLLWKWQRNDRNATGKATASLPPQQWQPASGILMTNDVAETNPEE 825

Query:   812 AVPCFALSKNDSYVMSASGGKISLFNXXXXXXXXXXXXXXXXXXXXXXHPQDNNIIAIGM 871
             AVPCFALSKNDSYVMSASGGKISLFN                      HPQDNNIIAIGM
Sbjct:   826 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM 885

Query:   872 DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN 931
             DDS+IQIYNVRVDEVKSKLKGHSKRITGLAFS+ LNVLVSSGAD+QLCVW++DGWEKQK+
Sbjct:   886 DDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDGWEKQKS 945

Query:   932 RFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPIT 991
             + LQIP GR+ ++ SDTRVQFHQDQ+HFLVVHETQLAI+ETTKLEC+KQW  RES+APIT
Sbjct:   946 KVLQIPQGRSTSSLSDTRVQFHQDQVHFLVVHETQLAIYETTKLECMKQWPVRESAAPIT 1005

Query:   992 HATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1051
             HATFSCDSQL+Y  F+DAT+CVFS+ANL+LRCR+NPSAYLPA +S+SNVHPLVIAAHPQE
Sbjct:  1006 HATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPASLSNSNVHPLVIAAHPQE 1065

Query:  1052 PNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR 1106
              N FA+GLSDGGVH+FEPLESEGKWGV PP +NGS S++ ATP VG S SDQ QR
Sbjct:  1066 SNMFAVGLSDGGVHIFEPLESEGKWGVAPPPENGSASAVTATPSVGASASDQPQR 1120

GO:0005634 "nucleus" evidence=ISM

GO:0010072 "primary shoot apical meristem specification" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2036204 TPL "TOPLESS" [Arabidopsis thaliana (taxid:3702)]

 Score = 2536 (897.8 bits), Expect = 0., Sum P(2) = 0.
 Identities = 478/569 (84%), Positives = 511/569 (89%)

Query:     1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
             MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct:     1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query:    61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
             TKVDDNRYSMKIFFEIRKQKYLEALDKHDR KAV+ILVKDLKVFSTFNEELFKEITQLLT
Sbjct:    61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120

Query:   121 LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNS--------SLN 172
             LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFP L+NS        SLN
Sbjct:   121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSLN 180

Query:   173 WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGXXX 232
             WQHQLCKNPRPNPDIKTLFVDH+CG PNGARAPSP NNPLLG +PKAG FPPLGAHG   
Sbjct:   181 WQHQLCKNPRPNPDIKTLFVDHSCGPPNGARAPSPVNNPLLGGIPKAGGFPPLGAHGPFQ 240

Query:   233 XXXXXXXXXLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGD 292
                      LAGWMS+P +V HPAVS GAI LG PSIPAA LKHPRTPPTN S+DYPS D
Sbjct:   241 PTASPVPTPLAGWMSSPSSVPHPAVSAGAIALGGPSIPAA-LKHPRTPPTNASLDYPSAD 299

Query:   293 SDHLSKRTRPIGISDEINLPVNVLPVSFTGXXXXXXXXQAFSTPEDLPKTVTRTLNQGSS 352
             S+H+SKRTRP+GISDE+NL VN+LP+SF+G         AF  P+DLPKTV RTL+QGSS
Sbjct:   300 SEHVSKRTRPMGISDEVNLGVNMLPMSFSGQAHGHS--PAFKAPDDLPKTVARTLSQGSS 357

Query:   353 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 412
             PMSMDFHP++QTLLLVGTNVGDIGLWEVGSRERLV + FKVWDL  CSMPLQAALVK+P 
Sbjct:   358 PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417

Query:   413 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 472
             VSVNRVIWSPDGSLFGVAYSRHIVQ+YSYHGG+++RQHLEIDAHVGGVNDI+FS PNKQL
Sbjct:   418 VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNKQL 477

Query:   473 CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 532
             CVITCGDDKTIKVWDA  G K++ FEGHEAPVYSVCPH+KENIQFIFSTALDGKIKAWLY
Sbjct:   478 CVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLY 537

Query:   533 DNLGSRVDYEAPGRWCTTMAYSADGTRTY 561
             DN+GSRVDY+APGRWCTTMAYSADGTR +
Sbjct:   538 DNMGSRVDYDAPGRWCTTMAYSADGTRLF 566

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010072 "primary shoot apical meristem specification" evidence=IGI;IMP

GO:0009733 "response to auxin stimulus" evidence=IPI

GO:0010051 "xylem and phloem pattern formation" evidence=IGI

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=IMP

TAIR|locus:2086770 TPR2 "TOPLESS-related 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1869 (663.0 bits), Expect = 0., Sum P(2) = 0.
 Identities = 366/576 (63%), Positives = 435/576 (75%)

Query:     1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
             MSSLSRELVFLILQFLDEEKFKE+VHKLEQESGFFFN+KYFE++   G WD+VEKYLSGF
Sbjct:     1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60

Query:    61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
             TKVDDNRYSMKIFFEIRKQKYLEALD++DRAKAVEIL KDLKVF+TFNEEL+KEITQLLT
Sbjct:    61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120

Query:   121 LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLK--------NSSLN 172
             LENFRENEQLSKYGDTKSARSIM  ELKKLIEANPLFR+KL FP+ K        N SLN
Sbjct:   121 LENFRENEQLSKYGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSLN 180

Query:   173 WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGXXX 232
             WQHQLCKNPRPNPDIKTLF+DH+C   NGARA +P N P+  ++ +   F PLG HG   
Sbjct:   181 WQHQLCKNPRPNPDIKTLFLDHSCSPSNGARALTPVNLPV-AAVARPSNFVPLGVHGGPF 239

Query:   233 XXXXX---XXXXLAGWMSNP-PTVTHPAVSGGAIGLGSPSIPAAA--LKHPRTPPTNPSV 286
                         LAGWM+NP P+ + P  SG       P  P+    LKHPR P  +  +
Sbjct:   240 QSNPAPAPNANALAGWMANPNPSSSVP--SGVVAASPFPMQPSQVNELKHPRAPSNSLGL 297

Query:   287 -DYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGXXXXXXXXQAFSTPEDLPKTVTR 345
              DY S D + L KR R    S+E+  P +  P +               + +DLP+ V  
Sbjct:   298 MDYQSADHEQLMKRLRSAQTSNEVTYPAHSHPPA---------------SLDDLPRNVVS 342

Query:   346 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQA 405
             T+ QGS  +SMDFHP   TLL VG + G++ LWEVGSRE++V   FK+W++ ACS+  Q 
Sbjct:   343 TIRQGSVVISMDFHPSHHTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQG 402

Query:   406 ALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF 465
             ++VK+P +SV RV WSPDG+L GV++++H++ +Y+Y G D +RQHLEIDAHVG VND+AF
Sbjct:   403 SIVKEPSISVTRVAWSPDGNLLGVSFTKHLIHVYAYQGSD-LRQHLEIDAHVGCVNDLAF 461

Query:   466 SHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDG 525
             +HPNKQ+CV+TCGDDK IKVWD + G K + FEGHEAPVYS+CPH KENIQFIFSTALDG
Sbjct:   462 AHPNKQMCVVTCGDDKLIKVWDLS-GKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDG 520

Query:   526 KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY 561
             KIKAWLYDN+GSRVDY+APG+WCTTM YSADG+R +
Sbjct:   521 KIKAWLYDNVGSRVDYDAPGQWCTTMLYSADGSRLF 556

GO:0005634 "nucleus" evidence=ISM

GO:0010072 "primary shoot apical meristem specification" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

TAIR|locus:2040100 AT2G25420 "AT2G25420" [Arabidopsis thaliana (taxid:3702)]

 Score = 604 (217.7 bits), Expect = 5.8e-91, Sum P(2) = 5.8e-91
 Identities = 139/374 (37%), Positives = 205/374 (54%)

Query:   722 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSG 781
             K  E+ +P+QC +L LP+     KI+RL ++ SG+ ILALA +A H LW W  ++ N   
Sbjct:   368 KPNEIKDPSQCNALVLPDCFSEEKIARLTYSPSGDYILALAEDATHKLWTWSSSQ-NEFC 426

Query:   782 KATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNXXXX 841
             K      P+L QP SG  M N++  S  +++  CFA+    SY+ S SGGKI++F+    
Sbjct:   427 KENVYPKPRLHQPQSGKTMENEMATS-VQKSTSCFAVK--GSYLFSTSGGKIAVFDLKNF 483

Query:   842 XXXXXXXXXXXXXXXXXXHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLA 901
                                P D  ++A+G+DD SI I+ +   +VK KL+GH ++IT LA
Sbjct:   484 EKVASFGSPTPMATYFIFIPGD--LLAVGLDDGSIFIHCLSSRKVKEKLEGHDQKITCLA 541

Query:   902 FSHALNVLVSSGADSQLCVWSSDGWEK--QKNRFLQIPTGRTPTAQS-DTRVQFHQDQIH 958
             FS   NVLVSS +D +LC+WS+  W K   KN   +        + S  T +QF   QI 
Sbjct:   542 FSRCFNVLVSSDSDGKLCLWSTKSWVKLTSKNSTRKFCNRSNLESTSLVTHIQFDPYQIE 601

Query:   959 FLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1018
              LVVH+  + ++E   L+C  QW+P  S   IT AT+S D +++Y  F   ++ +  +  
Sbjct:   602 LLVVHDGWIGLYEVRTLDCRLQWIPDASDPAITSATYSSDGEIIYVGFRCGSIKIVDSKT 661

Query:  1019 LKLRCRINPSAYLPAGVS--SSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKW 1076
                 C+IN +++     S  S  V+P V+AAHP  PN+ + GLS+G V V +PL S G W
Sbjct:   662 FMTLCQINLTSFTQLSTSNISLEVYPTVVAAHPSHPNQISAGLSNGKVIVLQPLWSGG-W 720

Query:  1077 GVPPPV-DNGSTSS 1089
             G   P+ DNG  S+
Sbjct:   721 GEAAPLEDNGDYSN 734

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

DICTYBASE|DDB_G0278353 smu1 "suppressor of mec-8 and unc-52-like protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 122 (48.0 bits), Expect = 1.5e-14, Sum P(3) = 1.5e-14
 Identities = 54/183 (29%), Positives = 82/183 (44%)

Query:     5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFNM----KYFEDEVHNGNWDDVEKYLSGF 60
             S++++ LILQFL E     ++  L++E+G   N     + F ++V NGNWD V       
Sbjct:    16 SQDVIKLILQFLKENSLGNSLTALQEETGINLNAVDSKETFLNDVKNGNWDSV------L 69

Query:    61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
             T V   R S  +  ++ +Q  +E L  H   K  E+    ++     N     +  + L 
Sbjct:    70 TVVSTLRLSTTLLMDLYEQ-IVELL--H--LKEYELCKYLIRKTEPLNYMKLNQQERYLK 124

Query:   121 LENFRENEQLS-----KYGDTKSARSIMLVE-LKKLIEANPLFRDKLQFPNLKNSSLNWQ 174
             LEN  + E +      KYG T   R   L+E L   I   P  R      +L + SL+WQ
Sbjct:   125 LENHLQREYIDLGDFYKYGITTEKRRKQLIEQLNNEIITVPSSR----LLSLLSQSLHWQ 180

Query:   175 -HQ 176
              HQ
Sbjct:   181 KHQ 183

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

DICTYBASE|DDB_G0287273 wdr5 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 167 (63.8 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
 Identities = 48/170 (28%), Positives = 83/170 (48%)

Query:   414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
             S++ V +SPDG     A +   ++I+  + G   R    ++ H  G++DIA+S  +K +C
Sbjct:    48 SISSVKFSPDGKWLASASADKTIKIWGAYDGKFERT---LEGHKEGISDIAWSQDSKLIC 104

Query:   474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
               +  DDKTIK+WD  +G      +GH+  V+ V  + + N+  I S + D  ++ W   
Sbjct:   105 --SASDDKTIKIWDVESGKMVKTLKGHKEYVFGVSFNPQSNL--IVSGSFDENVRIWDV- 159

Query:   534 NLGSRVDY-EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 582
             N G       A     T + ++ DGT    G    ++ +  +DTT  + L
Sbjct:   160 NTGECTKMISAHSDPVTGVHFNRDGTLVVSGSYDGTVRI--WDTTTGQLL 207

GO:0051568 "histone H3-K4 methylation" evidence=ISS

GO:0042393 "histone binding" evidence=ISS

GO:0035097 "histone methyltransferase complex" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TAIR|locus:2172432 AT5G43920 "AT5G43920" [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 5.1e-11, Sum P(3) = 5.1e-11
 Identities = 48/197 (24%), Positives = 89/197 (45%)

Query:     7 ELVFLILQFLDEEKFKETVHKLEQESGFFF---NMKYFEDEVHNGNWDDVEKYLSGF--T 61
             E + +++Q L    FK +   LE ES   +   + ++ E +V +GNWD   + L      
Sbjct:    19 EFIRILVQCLYSLGFKNSASCLEFESKILYKTADSEFLEKQVLSGNWDSCVQVLDRIFDN 78

Query:    62 KVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTL 121
              +DD R +    + + KQ  LE L + D + A+ +L K   +     E++ +    ++  
Sbjct:    79 SMDDTRNTA--LYLVFKQCLLEYLKRGDVSLALNVLRKQAPLLRMGKEKIHRLACDIVYS 136

Query:   122 ENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSSLNWQHQLCKNP 181
             +     E  +        R  +LVEL+KLI   P+   + +  +L  +++  Q   C   
Sbjct:   137 KEMESGEVDNCL--VLDLRRKLLVELEKLIPL-PIVIPERRLEHLVETAVMDQIDTCMYH 193

Query:   182 RPNPDIKTLFVDHTCGQ 198
               + D  +L+ DH CG+
Sbjct:   194 N-SCDAVSLYKDHCCGR 209

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

TAIR|locus:2159562 AT5G08560 "AT5G08560" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 9.1e-11, Sum P(4) = 9.1e-11
 Identities = 48/195 (24%), Positives = 89/195 (45%)

Query:     7 ELVFLILQFLDEEKFKETVHKLEQESGFFFN---MKYFEDEVHNGNWDDVEKYLSGFTKV 63
             E V +I + L    + +T   LE+ESG   +   +K F  +V +G WD   K L      
Sbjct:    67 EFVRIITRALYSLGYDKTGAMLEEESGISLHNSTIKLFLQQVKDGKWDQSVKTLHRIGFP 126

Query:    64 DDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLEN 123
             D+       F  + +QK+LE L     A A+  L  ++       + + +  + L++  +
Sbjct:   127 DEKAVKAASFL-LLEQKFLEFLKVEKIADALRTLRNEMAPLRINTKRVHELASSLISPSS 185

Query:   124 FRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSSLNWQHQLCKNPRP 183
             F  +   +   ++ ++RS +L EL+ L+ A+ +  +K +   L  +SL+ Q   C     
Sbjct:   186 FISHTTSTPGKESVNSRSKVLEELQTLLPASVIIPEK-RLECLVENSLHIQRDSCVFHNT 244

Query:   184 NPDIKTLFVDHTCGQ 198
                  +L+ DH CG+
Sbjct:   245 LDSDLSLYSDHQCGK 259

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0009630 "gravitropism" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009888 "tissue development" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0010638 "positive regulation of organelle organization" evidence=RCA

GO:0016926 "protein desumoylation" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA

FB|FBgn0036354 Poc1 "Proteome of centrioles 1" [Drosophila melanogaster (taxid:7227)]

 Score = 92 (37.4 bits), Expect = 3.3e-10, Sum P(3) = 3.3e-10
 Identities = 24/78 (30%), Positives = 39/78 (50%)

Query:   572 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 631
             V FD+T +  L A DD S K W +   Q ++S         S +  F+ +G L+A +++D
Sbjct:   108 VDFDSTGHLMLTASDDKSAKIWRVARRQFVSSFAQQNNWVRSAK--FSPNGKLVATASDD 165

Query:   632 NGIKILATSDGIRLLRTF 649
               ++I     G   +RTF
Sbjct:   166 KSVRIYDVDSG-ECVRTF 182

GO:0051297 "centrosome organization" evidence=IMP

ASPGD|ASPL0000006405 AN6960 [Emericella nidulans (taxid:162425)]

 Score = 146 (56.5 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
 Identities = 47/167 (28%), Positives = 79/167 (47%)

Query:   389 RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR 448
             R  K+W   A +  LQ  L +     V  V++S D  L   A     V+I+       ++
Sbjct:   453 RTVKIWH--AATGSLQRTL-EGHNDWVRSVVFSHDSRLIASASDDMTVKIWDT-ATVPLQ 508

Query:   449 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 508
              +LE  +H   V  + FSH ++ L   +  DD T+K+WD   G+ +   EGH+  V SV 
Sbjct:   509 NNLE--SHDNWVRSVVFSHDSRLLA--SASDDMTVKIWDTATGSLENTLEGHDDRVNSVS 564

Query:   509 PHHKENIQFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTMAYS 554
                  + + + S + DG +K W Y   G+ +  ++  GR   ++A+S
Sbjct:   565 --FSPDSRLLASASDDGTVKIW-YAATGTVQHTFDGSGRVAISLAFS 608

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030001 "metal ion transport" evidence=IEA

GO:0046873 "metal ion transmembrane transporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0WV90	TPR1_ARATH	No assigned EC number	0.8078	0.9819	0.9696	no	no
Q94AI7	TPL_ARATH	No assigned EC number	0.8228	0.9918	0.9699	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	1106
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-24
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-23
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-21
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-18
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-17
smart00668	58	smart00668, CTLH, C-terminal to LisH motif	1e-15
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-14
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-13
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-13
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-13
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-12
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-12
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-10
smart00667	34	smart00667, LisH, Lissencephaly type-1-like homolo	4e-06
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	6e-06
smart00320	40	smart00320, WD40, WD40 repeats	1e-05
smart00320	40	smart00320, WD40, WD40 repeats	2e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-05
pfam10607	144	pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif	3e-04
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.001

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  102 bits (257), Expect = 6e-24
 Identities = 60/245 (24%), Positives = 96/245 (39%), Gaps = 32/245 (13%)

Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
            V  V +SPDG L         ++++    G+ +R  L+   H G V D+A S     L 
Sbjct: 11  GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRT-LK--GHTGPVRDVAASADGTYL- 66

Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
             +   DKTI++WD   G       GH + V SV      + + + S++ D  IK W  +
Sbjct: 67  -ASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSP--DGRILSSSSRDKTIKVWDVE 123

Query: 534 NLGSRVDYEAPGRWCTTMAY----------SADGT------------RTYQGFRKRSLGV 571
                        W  ++A+          S DGT             T  G        
Sbjct: 124 TGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNS- 182

Query: 572 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 631
           V F     + L++  D +IK WD+ + + L ++        S  + F+ DG LLA  + D
Sbjct: 183 VAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNS--VAFSPDGYLLASGSED 240

Query: 632 NGIKI 636
             I++
Sbjct: 241 GTIRV 245

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  100 bits (251), Expect = 5e-23
 Identities = 64/325 (19%), Positives = 101/325 (31%), Gaps = 92/325 (28%)

Query: 354 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV 413
             + F P  + L               GS +  +    KVWDL    +      +K    
Sbjct: 13  TCVAFSPDGKLLA-------------TGSGDGTI----KVWDLETGELLRT---LKGHTG 52

Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR---QHLE------------------ 452
            V  V  S DG+      S   ++++    G+ VR    H                    
Sbjct: 53  PVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSS 112

Query: 453 ------------------IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ 494
                             +  H   VN +AFS       V +   D TIK+WD   G   
Sbjct: 113 RDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTF--VASSSQDGTIKLWDLRTGKCV 170

Query: 495 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYS 554
               GH   V SV          + S++ DG IK W                   ++A+S
Sbjct: 171 ATLTGHTGEVNSVAFSPDGE--KLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFS 228

Query: 555 ADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD-DFSIKFWDMDSVQLLTSIDADGGLPAS 613
            DG                        LA+G  D +I+ WD+ + + + ++        +
Sbjct: 229 PDG----------------------YLLASGSEDGTIRVWDLRTGECVQTLSG----HTN 262

Query: 614 P--RIRFNKDGCLLAVSTNDNGIKI 636
               + ++ DG  LA  + D  I+I
Sbjct: 263 SVTSLAWSPDGKRLASGSADGTIRI 287

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 93.9 bits (234), Expect = 6e-21
 Identities = 68/303 (22%), Positives = 105/303 (34%), Gaps = 68/303 (22%)

Query: 310 NLPVNVLPVSFTGHSH-------SHSHSQAFSTPEDLPKTV----------TRTLNQGSS 352
           +L    L  +  GH+        S   +   S   D  KT+           RTL   +S
Sbjct: 37  DLETGELLRTLKGHTGPVRDVAASADGTYLASGSSD--KTIRLWDLETGECVRTLTGHTS 94

Query: 353 P-MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP 411
              S+ F P    +L   +    I +W+V + +              C   L+     D 
Sbjct: 95  YVSSVAFSP-DGRILSSSSRDKTIKVWDVETGK--------------CLTTLRGH--TDW 137

Query: 412 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ 471
              VN V +SPDG+    +     ++++    G  V        H G VN +AFS   ++
Sbjct: 138 ---VNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATL---TGHTGEVNSVAFSPDGEK 191

Query: 472 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL 531
           L   +   D TIK+WD + G       GHE  V SV       +  + S + DG I+ W 
Sbjct: 192 LL--SSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYL--LASGSEDGTIRVWD 247

Query: 532 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIK 591
                            T++A+S DG                      R  +   D +I+
Sbjct: 248 LRTGECVQTLSGHTNSVTSLAWSPDG---------------------KRLASGSADGTIR 286

Query: 592 FWD 594
            WD
Sbjct: 287 IWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 87.5 bits (215), Expect = 8e-18
 Identities = 90/467 (19%), Positives = 170/467 (36%), Gaps = 55/467 (11%)

Query: 319 SFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSP-MSMDFHPVQQTLLLVGTNVGDIGL 377
             +  S     +    +   LP   +  L        S+ F P  + LLL G++ G I L
Sbjct: 33  LGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGE-LLLSGSSDGTIKL 91

Query: 378 WEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW-SPDGSLFGVAYSRHIV 436
           W++ + E+L+                  +L      SV+++   SPDG+   +A S    
Sbjct: 92  WDLDNGEKLI-----------------KSLEGLHDSSVSKLALSSPDGNSILLASSSLDG 134

Query: 437 QIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI 496
            +  +      +    ++ H   V  +AFS P+ +L       D TIK+WD   G     
Sbjct: 135 TVKLWDLSTPGKLIRTLEGHSESVTSLAFS-PDGKLLASGSSLDGTIKLWDLRTGKPLST 193

Query: 497 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD 556
             GH  PV S+       +  I S + DG I+ W              G+   +      
Sbjct: 194 LAGHTDPVSSLAFSPDGGL-LIASGSSDGTIRLWDLST----------GKLLRS------ 236

Query: 557 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRI 616
              T  G     +    F    +   +   D +I+ WD+ S   L    +         +
Sbjct: 237 ---TLSGHSDSVVSS--FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVL-SV 290

Query: 617 RFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAA 676
            F+ DG LLA  ++D  +++     G +LL +     ++   +S +  P  S + +  + 
Sbjct: 291 AFSPDGKLLASGSSDGTVRLWDLETG-KLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSD 349

Query: 677 AATSAGLADRAASMVSIPGMNGDVRSLA--DVKPRITEESNDKS-KVWKLTELSEPNQCR 733
             T      R    +     + +V S++       ++  S D + ++W L+  S      
Sbjct: 350 DGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLD 409

Query: 734 SLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSS 780
                       ++ L F+  G ++ + +S+    LW  + + ++ S
Sbjct: 410 GHTSR-------VTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVS 449

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 83.9 bits (208), Expect = 2e-17
 Identities = 51/203 (25%), Positives = 77/203 (37%), Gaps = 32/203 (15%)

Query: 450 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV-- 507
              +  H GGV  +AF  P+ +L + T   D TIKVWD   G      +GH  PV  V  
Sbjct: 2   RRTLKGHTGGVTCVAF-SPDGKL-LATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAA 59

Query: 508 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 567
                    ++ S + D  I+ W         D E                RT  G    
Sbjct: 60  SADGT----YLASGSSDKTIRLW---------DLETGEC-----------VRTLTGHTSY 95

Query: 568 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAV 627
               V F        ++  D +IK WD+++ + LT++        S  + F+ DG  +A 
Sbjct: 96  VSS-VAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNS--VAFSPDGTFVAS 152

Query: 628 STNDNGIKILATSDGIRLLRTFE 650
           S+ D  IK+     G + + T  
Sbjct: 153 SSQDGTIKLWDLRTG-KCVATLT 174

Length = 289

>gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif

 Score = 71.8 bits (177), Expect = 1e-15
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 34 FFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAK 92
           F   K   + +  G+WD+  ++LS        R S K+ FE+RKQK+LE + +    +
Sbjct: 1  EFDERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKLEE 58

Alpha-helical motif of unknown function. Length = 58

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 73.9 bits (182), Expect = 3e-14
 Identities = 42/219 (19%), Positives = 84/219 (38%), Gaps = 29/219 (13%)

Query: 813  VPCFALSKNDSYVMSASG-GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM 871
            V C A S +   + + SG G I ++++ T + + T          +A    D   +A G 
Sbjct: 12   VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA-DGTYLASGS 70

Query: 872  DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN 931
             D +I+++++   E    L GH+  ++ +AFS    +L SS  D  + VW          
Sbjct: 71   SDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWD--------- 121

Query: 932  RFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESS---- 987
                       T +  T ++ H D ++ +        +  +++   +K W  R       
Sbjct: 122  ---------VETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVAT 172

Query: 988  -----APITHATFSCDSQLVYACFLDATVCVFSAANLKL 1021
                   +    FS D + + +   D T+ ++  +  K 
Sbjct: 173  LTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC 211

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 72.4 bits (176), Expect = 5e-13
 Identities = 93/492 (18%), Positives = 169/492 (34%), Gaps = 102/492 (20%)

Query: 446 EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY--IFEGHEAP 503
                L +  H   +  IAFS   + L   +   D TIK+WD  NG K    +   H++ 
Sbjct: 54  PDLSSLLLRGHEDSITSIAFSPDGELLL--SGSSDGTIKLWDLDNGEKLIKSLEGLHDSS 111

Query: 504 VYSVCPHHKE-NIQFIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTY 561
           V  +     + N   + S++LDG +K W     G  +   E      T++A+S DG    
Sbjct: 112 VSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDG---- 167

Query: 562 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD 621
                           K     +  D +IK WD+ + + L+++                 
Sbjct: 168 ----------------KLLASGSSLDGTIKLWDLRTGKPLSTLAGH-----------TDP 200

Query: 622 GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSA 681
              LA S +   +    +SDG   L          S  S +S   +S  S          
Sbjct: 201 VSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFS---------- 250

Query: 682 GLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL 741
                          +G +          +  S+   ++W L   S   +  S       
Sbjct: 251 --------------PDGSLL--------ASGSSDGTIRLWDLRSSSSLLRTLSGHS---- 284

Query: 742 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 801
             + +  + F+  G  + + +S+    LW       +       S               
Sbjct: 285 --SSVLSVAFSPDGKLLASGSSDGTVRLW-------DLETGKLLSS-------------- 321

Query: 802 NDVTDSNPEEAVPCFALSKNDSYVMSASG--GKISLFNMMTFKTMATFMPPPPAATFLAF 859
             +T    E  V   + S + S ++S     G I L+++ T K + T          ++F
Sbjct: 322 --LTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNV-LSVSF 378

Query: 860 HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLC 919
            P D  +++ G  D +++++++    +   L GH+ R+T L FS     L S  +D+ + 
Sbjct: 379 SP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIR 437

Query: 920 VWSSDGWEKQKN 931
           +W      K  +
Sbjct: 438 LWDLKTSLKSVS 449

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 70.4 bits (173), Expect = 6e-13
 Identities = 37/170 (21%), Positives = 69/170 (40%), Gaps = 14/170 (8%)

Query: 855  TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA 914
            T +AF P D  ++A G  D +I+++++   E+   LKGH+  +  +A S     L S  +
Sbjct: 13   TCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSS 71

Query: 915  DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFET 972
            D  + +W       +    ++  TG T    S   V F  D    L     +  + +++ 
Sbjct: 72   DKTIRLWDL-----ETGECVRTLTGHTSYVSS---VAFSPDG-RILSSSSRDKTIKVWDV 122

Query: 973  TKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR 1022
               +C+     R  +  +    FS D   V +   D T+ ++     K  
Sbjct: 123  ETGKCLT--TLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCV 170

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 69.7 bits (171), Expect = 9e-13
 Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 2/114 (1%)

Query: 810 EEAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIA 868
              V   A S +   ++S+S  G I L+++ T K + T          +AF P D  ++A
Sbjct: 177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP-DGYLLA 235

Query: 869 IGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
            G +D +I+++++R  E    L GH+  +T LA+S     L S  AD  + +W 
Sbjct: 236 SGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 67.7 bits (166), Expect = 5e-12
 Identities = 48/238 (20%), Positives = 95/238 (39%), Gaps = 16/238 (6%)

Query: 790  QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTMATFM 848
            ++W   +G ++    T       V   A S + +Y+ S S    I L+++ T + + T  
Sbjct: 34   KVWDLETGELLR---TLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLT 90

Query: 849  PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNV 908
                  + +AF P D  I++    D +I++++V   +  + L+GH+  +  +AFS     
Sbjct: 91   GHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTF 149

Query: 909  LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQL 967
            + SS  D  + +W     +          TG T    S   V F  D    L    +  +
Sbjct: 150  VASSSQDGTIKLWDLRTGKCVATL-----TGHTGEVNS---VAFSPDGEKLLSSSSDGTI 201

Query: 968  AIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1025
             +++ +  +C+     R     +    FS D  L+ +   D T+ V+     +    +
Sbjct: 202  KLWDLSTGKCLGT--LRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL 257

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 69.0 bits (167), Expect = 6e-12
 Identities = 69/303 (22%), Positives = 106/303 (34%), Gaps = 54/303 (17%)

Query: 340 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLW--EVGSRERLVLR-------- 389
            K ++          S+ F P    L+  G++ G I LW    G   R  L         
Sbjct: 188 GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVS 247

Query: 390 ----------------NFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR 433
                             ++WDL + S  L+   +     SV  V +SPDG L     S 
Sbjct: 248 SFSPDGSLLASGSSDGTIRLWDLRSSSSLLR--TLSGHSSSVLSVAFSPDGKLLASGSSD 305

Query: 434 HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK 493
             V+++    G  +   L +  H G V+ ++FS P+  L V    DD TI++WD   G  
Sbjct: 306 GTVRLWDLETGKLLSS-LTLKGHEGPVSSLSFS-PDGSLLVSGGSDDGTIRLWDLRTGKP 363

Query: 494 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAY 553
               EGH   V SV       +    ST  DG ++ W         + +      T++ +
Sbjct: 364 LKTLEGHS-NVLSVSFSPDGRVVSSGST--DGTVRLWDLSTGSLLRNLDGHTSRVTSLDF 420

Query: 554 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPAS 613
           S DG                         +   D +I+ WD+ +     S   DG + AS
Sbjct: 421 SPDG---------------------KSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLAS 459

Query: 614 PRI 616
              
Sbjct: 460 KSS 462

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 63.2 bits (152), Expect = 4e-10
 Identities = 56/318 (17%), Positives = 111/318 (34%), Gaps = 21/318 (6%)

Query: 791  LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG---GKISLFNMMT-FKTMAT 846
            LW   +G  +   +   +          S + + ++ AS    G + L+++ T  K + T
Sbjct: 91   LWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRT 150

Query: 847  FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL 906
                  + T LAF P    + +    D +I+++++R  +  S L GH+  ++ LAFS   
Sbjct: 151  LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDG 210

Query: 907  N-VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET 965
              ++ S  +D  + +W      K     L   +    ++       F  D          
Sbjct: 211  GLLIASGSSDGTIRLWDLSTG-KLLRSTLSGHSDSVVSS-------FSPDGSLLASGSSD 262

Query: 966  QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1025
                    +            S+ +    FS D +L+ +   D TV ++     KL   +
Sbjct: 263  GTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSL 322

Query: 1026 NPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNG 1085
                +    VSS       ++  P      + G  DG + +++    +    +    +  
Sbjct: 323  TLKGH-EGPVSS-------LSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVL 374

Query: 1086 STSSMPATPPVGGSGSDQ 1103
            S S  P    V    +D 
Sbjct: 375  SVSFSPDGRVVSSGSTDG 392

Length = 466

>gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif

 Score = 44.0 bits (105), Expect = 4e-06
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 4  LSRELVFLILQFLDEEKFKETVHKLEQESGF 34
             EL  LIL++L    ++ET   L++ESG 
Sbjct: 2  SRSELNRLILEYLLRNGYEETAETLQKESGL 32

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 48.9 bits (117), Expect = 6e-06
 Identities = 30/134 (22%), Positives = 52/134 (38%), Gaps = 11/134 (8%)

Query: 890  LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTR 949
            LKGH+  +T +AFS    +L +   D  + VW  +  E    R L+  TG          
Sbjct: 5    LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL--RTLKGHTG------PVRD 56

Query: 950  VQFHQDQIHFLVVHE-TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD 1008
            V    D  +         + +++    ECV+      S   ++   FS D +++ +   D
Sbjct: 57   VAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTS--YVSSVAFSPDGRILSSSSRD 114

Query: 1009 ATVCVFSAANLKLR 1022
             T+ V+     K  
Sbjct: 115  KTIKVWDVETGKCL 128

Length = 289

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 43.9 bits (104), Expect = 6e-06
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 452 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 487
            +  H G V  +AFS     L   +  DD T++VWD
Sbjct: 6   TLKGHTGPVTSVAFSPDGNLL--ASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 885 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
           E+   LKGH+  +T +AFS     L S   D  + +W 
Sbjct: 3   ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 452 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 487
            +  H G V  +AFS   K L   +  DD TIK+WD
Sbjct: 7   TLKGHTGPVTSVAFSPDGKYL--ASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 885 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
           ++   LKGH+  +T +AFS   N+L S   D  + VW 
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|220824 pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif domain

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 11/105 (10%)

Query: 35  FFNMKYFEDEVHNGNWDDVEKYL----SGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDR 90
           F       + + NG+ ++  ++         K++ N     + FE+R Q+++E + +   
Sbjct: 2   FKERNKIRESLLNGDLEEALEWCNENKPELLKINSN-----LEFELRLQQFIELIREGKI 56

Query: 91  AKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD 135
            +A+E   ++L  F  FNE+  KEI +L+ L  F +    S Y  
Sbjct: 57  LEALEYARENLAPF--FNEQHLKEIQKLMGLLAFPDPTDSSPYKS 99

RanBPM is a scaffolding protein and is important in regulating cellular function in both the immune system and the nervous system. This domain is at the C-terminus of the proteins and is the binding domain for the CRA motif (for CT11-RanBPM), which is comprised of approximately 100 amino acids at the C terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined. This region contains CTLH and CRA domains annotated by SMART; however, these may be a single domain, and it is refereed to as a C-terminal to LisH motif. Length = 144

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 31/165 (18%), Positives = 55/165 (33%), Gaps = 25/165 (15%)

Query: 333 FSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFK 392
           +        +            S+ F P    L+  G++ G I LW++ + + L      
Sbjct: 311 WDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEG- 369

Query: 393 VWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLE 452
                                +V  V +SPDG +     +   V+++    G  +R    
Sbjct: 370 -------------------HSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLR---N 407

Query: 453 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF 497
           +D H   V  + FS       + +   D TI++WD     K   F
Sbjct: 408 LDGHTSRVTSLDFS--PDGKSLASGSSDNTIRLWDLKTSLKSVSF 450

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1106
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	100.0
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG1539	910	consensus WD repeat protein [General function pred	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG1063	764	consensus RNA polymerase II elongator complex, sub	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG1539	910	consensus WD repeat protein [General function pred	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG2106	626	consensus Uncharacterized conserved protein, conta	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG1063	764	consensus RNA polymerase II elongator complex, sub	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG2048	691	consensus WD40 repeat protein [General function pr	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG2048	691	consensus WD40 repeat protein [General function pr	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG2106	626	consensus Uncharacterized conserved protein, conta	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.98
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.98
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.98
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
KOG0643	327	consensus Translation initiation factor 3, subunit	99.96
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.95
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.95
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG2096	420	consensus WD40 repeat protein [General function pr	99.95
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.95
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.95
PTZ00421	493	coronin; Provisional	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0639	705	consensus Transducin-like enhancer of split protei	99.95
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.95
PTZ00421	493	coronin; Provisional	99.94
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.94
KOG0641	350	consensus WD40 repeat protein [General function pr	99.94
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.94
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.94
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.94
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.94
PTZ00420	568	coronin; Provisional	99.94
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.94
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.94
KOG2096	420	consensus WD40 repeat protein [General function pr	99.94
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.94
KOG0289	506	consensus mRNA splicing factor [General function p	99.93
KOG0289	506	consensus mRNA splicing factor [General function p	99.93
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.93
KOG1963	792	consensus WD40 repeat protein [General function pr	99.93
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.93
PTZ00420	568	coronin; Provisional	99.93
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.93
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.92
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.92
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.91
KOG1274	933	consensus WD40 repeat protein [General function pr	99.91
KOG0639	705	consensus Transducin-like enhancer of split protei	99.91
KOG0646	476	consensus WD40 repeat protein [General function pr	99.91
KOG1274	933	consensus WD40 repeat protein [General function pr	99.91
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.91
KOG1963	792	consensus WD40 repeat protein [General function pr	99.91
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.9
KOG0646	476	consensus WD40 repeat protein [General function pr	99.9
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.9
KOG1273	405	consensus WD40 repeat protein [General function pr	99.9
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.9
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.9
KOG2055	514	consensus WD40 repeat protein [General function pr	99.9
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.89
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.89
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.89
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.89
KOG2055	514	consensus WD40 repeat protein [General function pr	99.89
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.89
KOG1273	405	consensus WD40 repeat protein [General function pr	99.89
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.88
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.88
KOG0267	825	consensus Microtubule severing protein katanin p80	99.87
KOG0267	825	consensus Microtubule severing protein katanin p80	99.87
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.87
KOG4328	498	consensus WD40 protein [Function unknown]	99.87
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.86
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.86
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.86
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.86
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.85
COG2319	466	FOG: WD40 repeat [General function prediction only	99.85
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.85
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.84
KOG4328	498	consensus WD40 protein [Function unknown]	99.84
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.84
COG2319	466	FOG: WD40 repeat [General function prediction only	99.83
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.83
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.82
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.82
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.82
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.82
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.81
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.81
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.81
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.81
KOG1310	758	consensus WD40 repeat protein [General function pr	99.8
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.79
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.79
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.78
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.77
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.76
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.76
KOG0649	325	consensus WD40 repeat protein [General function pr	99.76
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.76
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.76
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.75
KOG1188	376	consensus WD40 repeat protein [General function pr	99.75
PRK11028	330	6-phosphogluconolactonase; Provisional	99.75
KOG1188	376	consensus WD40 repeat protein [General function pr	99.74
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.74
KOG4227	609	consensus WD40 repeat protein [General function pr	99.74
PRK11028	330	6-phosphogluconolactonase; Provisional	99.74
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.74
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.74
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.73
KOG4227	609	consensus WD40 repeat protein [General function pr	99.73
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.73
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.72
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.71
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.71
KOG1334	559	consensus WD40 repeat protein [General function pr	99.7
KOG0649	325	consensus WD40 repeat protein [General function pr	99.7
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.7
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.7
KOG1334	559	consensus WD40 repeat protein [General function pr	99.69
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.69
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.68
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.67
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.66
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.66
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.65
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.65
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.65
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.64
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.63
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.63
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.61
KOG1310	758	consensus WD40 repeat protein [General function pr	99.61
COG4946	668	Uncharacterized protein related to the periplasmic	99.61
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.61
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.6
PRK01742	429	tolB translocation protein TolB; Provisional	99.59
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.57
PRK01742	429	tolB translocation protein TolB; Provisional	99.57
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.55
KOG2139	445	consensus WD40 repeat protein [General function pr	99.52
KOG2139	445	consensus WD40 repeat protein [General function pr	99.52
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.51
KOG2321	703	consensus WD40 repeat protein [General function pr	99.51
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.49
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.49
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.48
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.46
KOG2315	566	consensus Predicted translation initiation factor	99.45
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.45
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.44
PRK05137	435	tolB translocation protein TolB; Provisional	99.44
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.43
KOG2321	703	consensus WD40 repeat protein [General function pr	99.42
PRK03629	429	tolB translocation protein TolB; Provisional	99.42
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.41
PRK03629	429	tolB translocation protein TolB; Provisional	99.41
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.41
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.41
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.41
PRK05137	435	tolB translocation protein TolB; Provisional	99.4
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.4
COG4946	668	Uncharacterized protein related to the periplasmic	99.4
KOG2315	566	consensus Predicted translation initiation factor	99.4
PRK04922	433	tolB translocation protein TolB; Provisional	99.39
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.39
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.39
PRK04922	433	tolB translocation protein TolB; Provisional	99.38
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.38
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.37
PRK02889	427	tolB translocation protein TolB; Provisional	99.37
KOG2659	228	consensus LisH motif-containing protein [Cytoskele	99.36
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.36
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.34
PRK02889	427	tolB translocation protein TolB; Provisional	99.34
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.33
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.32
KOG2314	698	consensus Translation initiation factor 3, subunit	99.31
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	99.3
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.3
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.29
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.29
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.28
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.25
KOG2314	698	consensus Translation initiation factor 3, subunit	99.24
PRK01029	428	tolB translocation protein TolB; Provisional	99.23
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.22
PRK04792	448	tolB translocation protein TolB; Provisional	99.21
PRK00178	430	tolB translocation protein TolB; Provisional	99.2
KOG4547	541	consensus WD40 repeat-containing protein [General	99.18
KOG4547	541	consensus WD40 repeat-containing protein [General	99.17
PRK00178	430	tolB translocation protein TolB; Provisional	99.13
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.13
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.11
PRK01029	428	tolB translocation protein TolB; Provisional	99.11
PRK04792	448	tolB translocation protein TolB; Provisional	99.11
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.06
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.03
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.03
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.01
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.99
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.91
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.89
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.89
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.87
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.85
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.82
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.82
PRK04043	419	tolB translocation protein TolB; Provisional	98.8
PRK04043	419	tolB translocation protein TolB; Provisional	98.79
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.76
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	98.76
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.75
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.75
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.73
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.72
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.71
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.69
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.69
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.67
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.66
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.65
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.65
KOG0396	389	consensus Uncharacterized conserved protein [Funct	98.61
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.59
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.58
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.58
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.56
KOG2695	425	consensus WD40 repeat protein [General function pr	98.56
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.54
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.52
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.51
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.5
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.49
PRK02888	635	nitrous-oxide reductase; Validated	98.48
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.48
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.46
PF10607	145	CLTH: CTLH/CRA C-terminal to LisH motif domain; In	98.46
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.46
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.45
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.41
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.41
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.41
PRK02888	635	nitrous-oxide reductase; Validated	98.39
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.34
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.33
KOG2695	425	consensus WD40 repeat protein [General function pr	98.32
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.27
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.24
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.2
PF08513	27	LisH: LisH; InterPro: IPR013720 The LisH motif is	98.12
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.09
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	98.09
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.06
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.06
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.05
KOG3621	726	consensus WD40 repeat-containing protein [General	98.05
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.02
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.01
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.0
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.0
smart00668	58	CTLH C-terminal to LisH motif. Alpha-helical motif	97.98
KOG3621	726	consensus WD40 repeat-containing protein [General	97.98
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.97
smart00667	34	LisH Lissencephaly type-1-like homology motif. Alp	97.96
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.95
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.94
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.92
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.85
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.84
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.83
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.82
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.8
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.79
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.78
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.72
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.7
COG3391	381	Uncharacterized conserved protein [Function unknow	97.7
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.63
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.61
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.56
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.54
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.5
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.46
COG3391	381	Uncharacterized conserved protein [Function unknow	97.46
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	97.39
PRK13616	591	lipoprotein LpqB; Provisional	97.38
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.29
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.27
PRK13616	591	lipoprotein LpqB; Provisional	97.26
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.19
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.16
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.13
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.12
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.12
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.09
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.08
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.07
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.04
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.01
KOG2395	644	consensus Protein involved in vacuole import and d	96.99
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.89
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.89
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.86
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.78
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.58
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.56
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.55
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.53
KOG2395	644	consensus Protein involved in vacuole import and d	96.43
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.42
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.41
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.4
PHA02713	557	hypothetical protein; Provisional	96.3
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.25
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.22
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.21
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.17
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.13
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.07
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.06
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.04
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.02
cd08044	133	TAF5_NTD2 TAF5_NTD2 is the second conserved N-term	95.98
PRK10115	686	protease 2; Provisional	95.97
KOG2444	238	consensus WD40 repeat protein [General function pr	95.89
PF04494	142	TFIID_90kDa: WD40 associated region in TFIID subun	95.86
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.82
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.82
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.81
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.74
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.73
PHA02713	557	hypothetical protein; Provisional	95.57
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.52
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	95.46
KOG2444	238	consensus WD40 repeat protein [General function pr	95.43
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.35
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.23
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.15
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.03
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.93
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	94.79
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	94.69
PRK10115	686	protease 2; Provisional	94.64
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	94.61
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.49
PRK13684	334	Ycf48-like protein; Provisional	94.43
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.34
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	93.82
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.77
PHA03098	534	kelch-like protein; Provisional	93.74
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.68
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	93.54
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	93.26
PRK13684	334	Ycf48-like protein; Provisional	93.24
PHA03098	534	kelch-like protein; Provisional	93.23
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	93.18
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	93.05
PHA02790	480	Kelch-like protein; Provisional	92.99
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	92.88
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	92.87
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	92.86
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	92.72
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	92.59
PLN00033	398	photosystem II stability/assembly factor; Provisio	92.35
PF14727	418	PHTB1_N: PTHB1 N-terminus	92.2
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	91.92
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	91.89
KOG3616	1636	consensus Selective LIM binding factor [Transcript	91.87
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	91.78
COG5167	776	VID27 Protein involved in vacuole import and degra	91.68
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	91.5
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	91.32
PF13449	326	Phytase-like: Esterase-like activity of phytase	91.18
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	91.17
KOG2247	615	consensus WD40 repeat-containing protein [General	90.82
PHA02790	480	Kelch-like protein; Provisional	90.52
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	90.42
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	90.24
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	90.14
COG1520	370	FOG: WD40-like repeat [Function unknown]	90.05
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	89.8
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	89.76
PLN00033	398	photosystem II stability/assembly factor; Provisio	89.43
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	89.17
PF11725	1774	AvrE: Pathogenicity factor; InterPro: IPR021085 Th	89.04
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	88.52
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	88.31
COG5276	370	Uncharacterized conserved protein [Function unknow	88.29
COG4590	733	ABC-type uncharacterized transport system, permeas	88.26
COG4590	733	ABC-type uncharacterized transport system, permeas	88.02
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	87.99
COG3292	671	Predicted periplasmic ligand-binding sensor domain	87.51
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	87.32
KOG2377	657	consensus Uncharacterized conserved protein [Funct	86.52
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	86.48
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	86.21
PF13449	326	Phytase-like: Esterase-like activity of phytase	86.11
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	85.76
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	85.49
PF09862	113	DUF2089: Protein of unknown function (DUF2089); In	85.42
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	85.1
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	84.9
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	84.39
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	84.39
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	84.26
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	84.0
COG3292	671	Predicted periplasmic ligand-binding sensor domain	83.93
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	83.86
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	83.74
KOG2377	657	consensus Uncharacterized conserved protein [Funct	83.44
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	82.44
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	82.42
PRK13615	557	lipoprotein LpqB; Provisional	81.74
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	81.53
COG5167	776	VID27 Protein involved in vacuole import and degra	81.51
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	80.63
PLN02193	470	nitrile-specifier protein	80.61
COG1520	370	FOG: WD40-like repeat [Function unknown]	80.39

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.3e-66  Score=513.09  Aligned_cols=492  Identities=21%  Similarity=0.312  Sum_probs=398.4

Q ss_pred             hHHHHHHHHHHHhHhcHHHHHHHHHHhhCCCcc---HHHHHHHHhcCCHHHHHHHhcccccccCccccchhhhHHHHHHH
Q 001295            5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN---MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKY   81 (1106)
Q Consensus         5 ~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~~~---~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~   81 (1106)
                      +.|++|+++|+|..+||.+|+.+||.|+|+.+.   .+.|.+.++.|+|++++..+..+. .++......+.|++.+|+|
T Consensus        17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~-~~de~~~~ea~fLv~kQ~f   95 (519)
T KOG0293|consen   17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRIS-FEDERNRKEAMFLVNKQIF   95 (519)
T ss_pred             cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhcc-CcchhhhHHHHHHHHHHHH
Confidence            569999999999999999999999999999886   999999999999999999998884 3334345559999999999


Q ss_pred             HHHHhCCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccccccchhhccCCCchHHHHHHHHHHHhhhccCCCCcCcC
Q 001295           82 LEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKL  161 (1106)
Q Consensus        82 lEll~~~~~~~A~~~l~~~l~~l~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~  161 (1106)
                      ||++..+....|+.+||+.+.+++ +..+++++|+.-+..++-....+...-......|..|+++|+++|+|+.++|++ 
T Consensus        96 LEf~k~~~is~al~~l~~~~~~lr-~~~kk~~el~~sll~sn~~~~ne~~~~~~~~n~R~~ll~elskyi~p~illP~r-  173 (519)
T KOG0293|consen   96 LEFLKTGSISHALPVLRNPVLYLR-KNKKKFHELASSLLVSNDQFSNEENTTAQLNNERDKLLDELSKYIPPNILLPKR-  173 (519)
T ss_pred             HHHHhhccHhhhhHhhhcchhhhh-hhHHHHHHHHHHHhccccccccccchhhhhchhHHHHHHHHHhhCCHhhcCChH-
Confidence            999999999999999999999994 589999999887766544432221211225678999999999999999999999 


Q ss_pred             CchhhHhhhHHHHHHhccCCCCCCCccccccccccCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001295          162 QFPNLKNSSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVPTP  241 (1106)
Q Consensus       162 rl~~l~~qa~~~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (1106)
                      ||++|++||++||++.|.||| +.+..+||.||.|++               ..+                         
T Consensus       174 RLehLl~qAv~~Q~d~cvyhn-sldsvsll~Dh~c~~---------------~qi-------------------------  212 (519)
T KOG0293|consen  174 RLEHLLEQAVKYQRDSCVYHN-SLDSVSLLSDHFCGR---------------LQI-------------------------  212 (519)
T ss_pred             HHHHHHHHHHHHHHhHhHHhc-ccchhhhhhhcccCc---------------ccC-------------------------
Confidence            999999999999999999999 677799999999987               222                         


Q ss_pred             ccccccCCCCcccccccCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCccccccccCCCCCCcccccccccCccccc
Q 001295          242 LAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFT  321 (1106)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (1106)
                                                                                                      
T Consensus       213 --------------------------------------------------------------------------------  212 (519)
T KOG0293|consen  213 --------------------------------------------------------------------------------  212 (519)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCCCCCCCcceeeecc-CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCC
Q 001295          322 GHSHSHSHSQAFSTPEDLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACS  400 (1106)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~  400 (1106)
                                        |.+..+++. |+++||.+.||++|+| ||+++.|.+..||++.....+..            
T Consensus       213 ------------------p~qt~qil~~htdEVWfl~FS~nGky-LAsaSkD~Taiiw~v~~d~~~kl------------  261 (519)
T KOG0293|consen  213 ------------------PSQTWQILQDHTDEVWFLQFSHNGKY-LASASKDSTAIIWIVVYDVHFKL------------  261 (519)
T ss_pred             ------------------CchhhhhHhhCCCcEEEEEEcCCCee-EeeccCCceEEEEEEecCcceee------------
Confidence                              233334455 9999999999999997 99999999999999875444221            


Q ss_pred             ccccccccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCC
Q 001295          401 MPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD  480 (1106)
Q Consensus       401 ~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d  480 (1106)
                          ..++-+|..+|..+.||||.+||++|+.|..+.+||+.+|+......  .+|...+.+++|.|||.  .+++|+.|
T Consensus       262 ----~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~--~~V~Gs~d  333 (519)
T KOG0293|consen  262 ----KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGF--RFVTGSPD  333 (519)
T ss_pred             ----eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc--cCcCCCcceeEEccCCc--eeEecCCC
Confidence                11578999999999999999999999999999999999998766331  24668999999999999  79999999


Q ss_pred             CcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeE
Q 001295          481 KTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRT  560 (1106)
Q Consensus       481 ~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~  560 (1106)
                      ++|..||+. |..+...++-.                                           ...|.+++.++     
T Consensus       334 r~i~~wdlD-gn~~~~W~gvr-------------------------------------------~~~v~dlait~-----  364 (519)
T KOG0293|consen  334 RTIIMWDLD-GNILGNWEGVR-------------------------------------------DPKVHDLAITY-----  364 (519)
T ss_pred             CcEEEecCC-cchhhcccccc-------------------------------------------cceeEEEEEcC-----
Confidence            999999954 33222222100                                           01133334444     


Q ss_pred             EEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEcc
Q 001295          561 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS  640 (1106)
Q Consensus       561 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~  640 (1106)
                                      ||.++++.+.|..|++++..+......+..+   ..|++.+.|.|++++++.-.+..+++||+.
T Consensus       365 ----------------Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~---~~its~~iS~d~k~~LvnL~~qei~LWDl~  425 (519)
T KOG0293|consen  365 ----------------DGKYVLLVTVDKKIRLYNREARVDRGLISEE---QPITSFSISKDGKLALVNLQDQEIHLWDLE  425 (519)
T ss_pred             ----------------CCcEEEEEecccceeeechhhhhhhcccccc---CceeEEEEcCCCcEEEEEcccCeeEEeecc
Confidence                            4447888888889999988776655444433   359999999999999999999999999998


Q ss_pred             CCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceee
Q 001295          641 DGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKV  720 (1106)
Q Consensus       641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v  720 (1106)
                      .. ..++.+.||...                                                                 
T Consensus       426 e~-~lv~kY~Ghkq~-----------------------------------------------------------------  439 (519)
T KOG0293|consen  426 EN-KLVRKYFGHKQG-----------------------------------------------------------------  439 (519)
T ss_pred             hh-hHHHHhhccccc-----------------------------------------------------------------
Confidence            65 666666655431                                                                 


Q ss_pred             EecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCcc
Q 001295          721 WKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMM  800 (1106)
Q Consensus       721 w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~  800 (1106)
                                                         .+++-                                        
T Consensus       440 -----------------------------------~fiIr----------------------------------------  444 (519)
T KOG0293|consen  440 -----------------------------------HFIIR----------------------------------------  444 (519)
T ss_pred             -----------------------------------ceEEE----------------------------------------
Confidence                                               11111                                        


Q ss_pred             ccccCCCCCCCCeeEEEEe-cCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEE
Q 001295          801 TNDVTDSNPEEAVPCFALS-KNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQI  878 (1106)
Q Consensus       801 ~~~~~~~~~~~~v~~l~~s-~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~i  878 (1106)
                                     -||. .+.+++++|+ |+.|+||+..+++.+..+.||...|+|++|+|.+..++|+|++||+|+|
T Consensus       445 ---------------SCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRI  509 (519)
T KOG0293|consen  445 ---------------SCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRI  509 (519)
T ss_pred             ---------------eccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEE
Confidence                           1111 2557899999 9999999999999999999999999999999999999999999999999


Q ss_pred             EEeec
Q 001295          879 YNVRV  883 (1106)
Q Consensus       879 wd~~~  883 (1106)
                      |....
T Consensus       510 Wg~~~  514 (519)
T KOG0293|consen  510 WGPSD  514 (519)
T ss_pred             ecCCc
Confidence            98653

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=6.9e-62  Score=465.54  Aligned_cols=451  Identities=20%  Similarity=0.319  Sum_probs=377.3

Q ss_pred             hHHHHHHHHHHHhHhcHHHHHHHHHHhhCCCcc----HHHHHHHHhcCCHHHHHHHhcccccccCccccchhhhHHHHHH
Q 001295            5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQK   80 (1106)
Q Consensus         5 ~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~~~----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~   80 (1106)
                      +.+|+|||.|||+|+.++++.++||+|+++.+|    +..|-+.|.+|+||.+++.++.| .+|+.     -+..||||.
T Consensus         7 ssdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL-KLP~k-----kL~dLYEqi   80 (508)
T KOG0275|consen    7 SSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL-KLPDK-----KLIDLYEQI   80 (508)
T ss_pred             cchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc-cCchh-----HHHHHHHHH
Confidence            458999999999999999999999999999998    89999999999999999999999 56654     678899999


Q ss_pred             HHHHHhCCCHHHHHHHHHhh--cccccccCHHHHHHHHHHhcccccccchhhccCCCchHHHHHHHHHHHhhhccCCCCc
Q 001295           81 YLEALDKHDRAKAVEILVKD--LKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFR  158 (1106)
Q Consensus        81 ~lEll~~~~~~~A~~~l~~~--l~~l~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~  158 (1106)
                      .|||+|.++...|..+||+.  +.-|++.+|++|-.|..|+..+.+++.+.|.+  ..|+.|+.   .|.+.+..++.+.
T Consensus        81 vlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~d--ssKEkrRa---~IAQ~ls~EV~VV  155 (508)
T KOG0275|consen   81 VLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYGD--SSKEKRRA---VIAQALSGEVHVV  155 (508)
T ss_pred             HHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcCc--chHHHHHH---HHHHHhcCceEEc
Confidence            99999999999999999974  66677889999999999999999999999763  46777776   4445566666666


Q ss_pred             CcCCchhhHhhhHHHHHHhccCCCCCCCccccccccccCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001295          159 DKLQFPNLKNSSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPV  238 (1106)
Q Consensus       159 ~~~rl~~l~~qa~~~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (1106)
                      |++||+.|++||+|||+.                                          ++.+||++..+.|++...  
T Consensus       156 ppSRLlaLlGQaLKWQqH------------------------------------------QGLLPPGt~iDLFRGkAA--  191 (508)
T KOG0275|consen  156 PPSRLLALLGQALKWQQH------------------------------------------QGLLPPGTTIDLFRGKAA--  191 (508)
T ss_pred             ChHHHHHHHHHHhhhHhh------------------------------------------cCCCCCCceeeeccchhh--
Confidence            667999999999999999                                          677889999999998874  


Q ss_pred             CCCccccccCCCCcccccccCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCccccccccCCCCCCcccccccccCcc
Q 001295          239 PTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPV  318 (1106)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (1106)
                             +.....+.+                                                                
T Consensus       192 -------~K~~~Ee~~----------------------------------------------------------------  200 (508)
T KOG0275|consen  192 -------MKDQEEERY----------------------------------------------------------------  200 (508)
T ss_pred             -------hhhhHhhhc----------------------------------------------------------------
Confidence                   221111111                                                                


Q ss_pred             cccCCCCCCCCCCCCCCCCCCCcceeee--ccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeecc
Q 001295          319 SFTGHSHSHSHSQAFSTPEDLPKTVTRT--LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDL  396 (1106)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~  396 (1106)
                                           |..+.+.  ++.++.+.|..|||||+| |++|+.||.|.|||+.+|+......++.-| 
T Consensus       201 ---------------------Pt~l~r~IKFg~KSh~EcA~FSPDgqy-LvsgSvDGFiEVWny~~GKlrKDLkYQAqd-  257 (508)
T KOG0275|consen  201 ---------------------PTQLARSIKFGQKSHVECARFSPDGQY-LVSGSVDGFIEVWNYTTGKLRKDLKYQAQD-  257 (508)
T ss_pred             ---------------------hHHhhhheecccccchhheeeCCCCce-Eeeccccceeeeehhccchhhhhhhhhhhc-
Confidence                                 2222222  345677899999999997 999999999999999999876543222211 


Q ss_pred             CcCCccccccccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeec-cccCCeeEEEEcCCCCceEEE
Q 001295          397 GACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVI  475 (1106)
Q Consensus       397 ~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~-~h~~~V~~~~~s~d~~~~~l~  475 (1106)
                                .+.-+..+|.|++||.|..+||+|+.||.|+||.+.+|.+++.   |. +|+..|+|+.|+.|+.  .++
T Consensus       258 ----------~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRr---FdrAHtkGvt~l~FSrD~S--qiL  322 (508)
T KOG0275|consen  258 ----------NFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRR---FDRAHTKGVTCLSFSRDNS--QIL  322 (508)
T ss_pred             ----------ceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHH---hhhhhccCeeEEEEccCcc--hhh
Confidence                      3567888999999999999999999999999999999999884   44 8999999999999999  699


Q ss_pred             EecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCC--CeeEEEEE
Q 001295          476 TCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG--RWCTTMAY  553 (1106)
Q Consensus       476 s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~  553 (1106)
                      +++.|.+++|.-+++|+++..++||...|+...|  ..+|+.+++++.||+|++|+..+.++..++....  ..|.++..
T Consensus       323 S~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~f--t~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~  400 (508)
T KOG0275|consen  323 SASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATF--TDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVIL  400 (508)
T ss_pred             cccccceEEEeccccchhHHHhcCccccccceEE--cCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEE
Confidence            9999999999999999999999999999999997  4566899999999999999999998888776543  34555554


Q ss_pred             ecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccC-CCCCCcCeEEEccCCCEEEEEeCCC
Q 001295          554 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD-GGLPASPRIRFNKDGCLLAVSTNDN  632 (1106)
Q Consensus       554 s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~~dg  632 (1106)
                      -|...                    ..++.+...++|++.++ .|+.++.+... ...+...+++.+|.|.++.+.+.|+
T Consensus       401 ~PKnp--------------------eh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~  459 (508)
T KOG0275|consen  401 LPKNP--------------------EHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDG  459 (508)
T ss_pred             cCCCC--------------------ceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCc
Confidence            44432                    46888888999999998 57788887532 2334567889999999999999999


Q ss_pred             cEEEEEccCC
Q 001295          633 GIKILATSDG  642 (1106)
Q Consensus       633 ~i~iwd~~~~  642 (1106)
                      .++.+...+|
T Consensus       460 vlYCF~~~sG  469 (508)
T KOG0275|consen  460 VLYCFSVLSG  469 (508)
T ss_pred             EEEEEEeecC
Confidence            9999998887

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.6e-57  Score=482.35  Aligned_cols=574  Identities=15%  Similarity=0.231  Sum_probs=474.8

Q ss_pred             EEEecCCCeEEEEEeccCcEEEEecCCccee-EEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeCCC
Q 001295          356 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERL-VLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH  434 (1106)
Q Consensus       356 ~~~sp~g~~llatg~~dg~i~iwd~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~  434 (1106)
                      ++||++|+. |++... ..|.+-|+.++... ..                  .-..-...+++++.+||+++|++++..+
T Consensus        25 ~~~s~nG~~-L~t~~~-d~Vi~idv~t~~~~l~s------------------~~~ed~d~ita~~l~~d~~~L~~a~rs~   84 (775)
T KOG0319|consen   25 VAWSSNGQH-LYTACG-DRVIIIDVATGSIALPS------------------GSNEDEDEITALALTPDEEVLVTASRSQ   84 (775)
T ss_pred             eeECCCCCE-EEEecC-ceEEEEEccCCceeccc------------------CCccchhhhheeeecCCccEEEEeeccc
Confidence            899999995 776553 46889999998873 21                  1244567899999999999999999999


Q ss_pred             eEEEEEccCCceeeeeeeecc-ccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccC
Q 001295          435 IVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE  513 (1106)
Q Consensus       435 ~v~iwd~~~~~~~~~~~~l~~-h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~  513 (1106)
                      .+++|++.+++.++   .++. |.+||.-++|+|.+.  ++++||.|+.++|||+..+.+.+.|+||.+.|.++.|++..
T Consensus        85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~  159 (775)
T KOG0319|consen   85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW  159 (775)
T ss_pred             eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence            99999999998777   4666 999999999999997  89999999999999999999999999999999999999999


Q ss_pred             CceEEEEEecCCeEEEEeCCCCCc-eeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEE
Q 001295          514 NIQFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF  592 (1106)
Q Consensus       514 ~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i  592 (1106)
                      +...|++|..|+++++||+.+... ...+..|...|+++++++|+.                     .+++++.|..+.+
T Consensus       160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~---------------------~~ls~~RDkvi~v  218 (775)
T KOG0319|consen  160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSL---------------------ELLSVGRDKVIIV  218 (775)
T ss_pred             chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCc---------------------eEEEeccCcEEEE
Confidence            888999999999999999996554 667788888888888888865                     6999999999999


Q ss_pred             EECCCcceeEEEccCCCCCCcCeEEEccC-----CCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCc
Q 001295          593 WDMDSVQLLTSIDADGGLPASPRIRFNKD-----GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTI  667 (1106)
Q Consensus       593 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  667 (1106)
                      ||+.+.+...++.....   +-++.+-++     |.++++.+.+|.+++||..++ .+....+.....          .+
T Consensus       219 wd~~~~~~l~~lp~ye~---~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~-~~~~~~~~~~~~----------e~  284 (775)
T KOG0319|consen  219 WDLVQYKKLKTLPLYES---LESVVRLREELGGKGEYIITAGGSGVVQYWDSESG-KCVYKQRQSDSE----------EI  284 (775)
T ss_pred             eehhhhhhhheechhhh---eeeEEEechhcCCcceEEEEecCCceEEEEecccc-hhhhhhccCCch----------hh
Confidence            99988888777765543   666777776     679999999999999999988 443332221100          00


Q ss_pred             CchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceE
Q 001295          668 SPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKIS  747 (1106)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~  747 (1106)
                                                    ...........++....|.++.++|.++.....++       .|....|.
T Consensus       285 ------------------------------~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~i-------vG~ndEI~  327 (775)
T KOG0319|consen  285 ------------------------------DHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQI-------VGYNDEIL  327 (775)
T ss_pred             ------------------------------hcceeccccCceEEEEccceEEEEEccccEEehhh-------cCCchhhe
Confidence                                          01111223455667777889999987765444333       35778899


Q ss_pred             EEEE-cCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEE
Q 001295          748 RLIF-TNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVM  826 (1106)
Q Consensus       748 ~~~~-s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~  826 (1106)
                      ++.| .|+.++++++++.+.+++|++.+...                      .  .+.+  |...|.++....+|-+|+
T Consensus       328 Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c----------------------~--ii~G--H~e~vlSL~~~~~g~lla  381 (775)
T KOG0319|consen  328 DMKFLGPEESHLAVATNSPELRLYTLPTSYC----------------------Q--IIPG--HTEAVLSLDVWSSGDLLA  381 (775)
T ss_pred             eeeecCCccceEEEEeCCCceEEEecCCCce----------------------E--EEeC--chhheeeeeecccCcEEE
Confidence            9888 56788999999999999997653211                      1  2333  999999999888889999


Q ss_pred             EEe-CCeEEEEEcCCC----ceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceE-----E----EEecC
Q 001295          827 SAS-GGKISLFNMMTF----KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV-----K----SKLKG  892 (1106)
Q Consensus       827 ~~s-dg~i~vwd~~~~----~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~-----~----~~l~~  892 (1106)
                      +|+ |.++++|.++++    -++....+|.+.|.+++++.....+|++++.|+++++|++...+.     +    .....
T Consensus       382 t~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~a  461 (775)
T KOG0319|consen  382 TGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERA  461 (775)
T ss_pred             EecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHh
Confidence            999 999999988433    345667899999999999986678999999999999999876211     1    13357


Q ss_pred             cccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEe
Q 001295          893 HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFE  971 (1106)
Q Consensus       893 h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d  971 (1106)
                      |...|++|+++|+.+++|+||.|++.+||+++.     ...+.++.||..   .+.++.|+|..+.+++ +.|++|+||.
T Consensus       462 HdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~-----~~l~~vLsGH~R---Gvw~V~Fs~~dq~laT~SgD~TvKIW~  533 (775)
T KOG0319|consen  462 HDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ-----LRLLGVLSGHTR---GVWCVSFSKNDQLLATCSGDKTVKIWS  533 (775)
T ss_pred             hcccccceEecCCCceEEecccccceeeecccC-----ceEEEEeeCCcc---ceEEEEeccccceeEeccCCceEEEEE
Confidence            999999999999999999999999999999995     456778889886   8999999999999999 6999999999


Q ss_pred             cCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCC
Q 001295          972 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1051 (1106)
Q Consensus       972 ~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d 1051 (1106)
                      +.+..|++++.  ||...|....|-.+|+.|++++.||.|++|++.++++++.+.       .|.+. |+  +++-++ +
T Consensus       534 is~fSClkT~e--GH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD-------~H~Dr-vW--aL~~~~-~  600 (775)
T KOG0319|consen  534 ISTFSCLKTFE--GHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLD-------AHNDR-VW--ALSVSP-L  600 (775)
T ss_pred             eccceeeeeec--CccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhh-------hccce-eE--EEeecC-c
Confidence            99999999997  999999999999999999999999999999999999999887       44344 88  777777 5


Q ss_pred             CCEEEEEeCCCcEEEEeecCCC
Q 001295         1052 PNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus      1052 ~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
                      ...++||+.||.|.+|.=.+.+
T Consensus       601 ~~~~~tgg~Dg~i~~wkD~Te~  622 (775)
T KOG0319|consen  601 LDMFVTGGGDGRIIFWKDVTEE  622 (775)
T ss_pred             cceeEecCCCeEEEEeecCcHH
Confidence            6799999999999999865543

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.9e-56  Score=472.66  Aligned_cols=563  Identities=13%  Similarity=0.187  Sum_probs=458.5

Q ss_pred             CCCCCCCCCcceeeecc---CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCcccccccc
Q 001295          332 AFSTPEDLPKTVTRTLN---QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALV  408 (1106)
Q Consensus       332 ~~~~~~~~~~~~~~~~~---h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  408 (1106)
                      .+...+..+........   ..+.+++++.+||+.+ |++++...-+++|++.+++.+..                   +
T Consensus        41 ~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~-L~~a~rs~llrv~~L~tgk~irs-------------------w  100 (775)
T KOG0319|consen   41 RVIIIDVATGSIALPSGSNEDEDEITALALTPDEEV-LVTASRSQLLRVWSLPTGKLIRS-------------------W  100 (775)
T ss_pred             eEEEEEccCCceecccCCccchhhhheeeecCCccE-EEEeeccceEEEEEcccchHhHh-------------------H
Confidence            33444444444422222   4578999999999995 88889999999999999977653                   4


Q ss_pred             CC-CCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEe
Q 001295          409 KD-PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD  487 (1106)
Q Consensus       409 ~~-h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd  487 (1106)
                      +. |+++|.-++|+|.|.+||+|+.|+.|+|||+..+.+..   .|+||.+.|.++.|.|+-...+|++|+.|+++++||
T Consensus       101 Ka~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwn  177 (775)
T KOG0319|consen  101 KAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWN  177 (775)
T ss_pred             hhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE---EecCCCceEEEEEeCCccchhheeecCCCceEEEEE
Confidence            55 99999999999999999999999999999999987766   799999999999999998766799999999999999


Q ss_pred             CCCCc-eeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeec
Q 001295          488 ATNGA-KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  566 (1106)
Q Consensus       488 ~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  566 (1106)
                      +.+.. ++..+..|...|+++.+.++  +..+++++.|..+.+||+...+....++.. ..+.++.+-+++.        
T Consensus       178 l~~~~tcl~~~~~H~S~vtsL~~~~d--~~~~ls~~RDkvi~vwd~~~~~~l~~lp~y-e~~E~vv~l~~~~--------  246 (775)
T KOG0319|consen  178 LNDKRTCLHTMILHKSAVTSLAFSED--SLELLSVGRDKVIIVWDLVQYKKLKTLPLY-ESLESVVRLREEL--------  246 (775)
T ss_pred             cccCchHHHHHHhhhhheeeeeeccC--CceEEEeccCcEEEEeehhhhhhhheechh-hheeeEEEechhc--------
Confidence            99554 48889999999999998655  578999999999999999765555544332 2345555544411        


Q ss_pred             cceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhh
Q 001295          567 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL  646 (1106)
Q Consensus       567 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  646 (1106)
                              ...+.++++++.+|.+++||..+++++....... ...+..+...+....++..+.|..+.++|..+. +..
T Consensus       247 --------~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~-~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l-~i~  316 (775)
T KOG0319|consen  247 --------GGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSD-SEEIDHLLAIESMSQLLLVTAEQNLFLYDEDEL-TIV  316 (775)
T ss_pred             --------CCcceEEEEecCCceEEEEecccchhhhhhccCC-chhhhcceeccccCceEEEEccceEEEEEcccc-EEe
Confidence                    0114589999999999999999998877664432 223666666666667777788899999998888 777


Q ss_pred             hhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCC
Q 001295          647 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL  726 (1106)
Q Consensus       647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~  726 (1106)
                      +.+-|....+.        .+...|                                ++...+++++..+.+++|++.+.
T Consensus       317 k~ivG~ndEI~--------Dm~~lG--------------------------------~e~~~laVATNs~~lr~y~~~~~  356 (775)
T KOG0319|consen  317 KQIVGYNDEIL--------DMKFLG--------------------------------PEESHLAVATNSPELRLYTLPTS  356 (775)
T ss_pred             hhhcCCchhhe--------eeeecC--------------------------------CccceEEEEeCCCceEEEecCCC
Confidence            77777666554        233333                                56788999999999999987754


Q ss_pred             CCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCC
Q 001295          727 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  806 (1106)
Q Consensus       727 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  806 (1106)
                      ..    ..+    .+|...|.++....+|..|++++.|.++++|.++.+...                   ....  ..+
T Consensus       357 ~c----~ii----~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~-------------------~~~~--a~~  407 (775)
T KOG0319|consen  357 YC----QII----PGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSK-------------------SLCV--AQA  407 (775)
T ss_pred             ce----EEE----eCchhheeeeeecccCcEEEEecCCceEEEEEecCCcch-------------------hhhh--hhh
Confidence            32    222    579999999998888889999999999999987422110                   0111  122


Q ss_pred             CCCCCCeeEEEEecCC-CEEEEEe-CCeEEEEEcCCCc---------eeeeecCCCCCeeEEEEecCCCceEEEeeCCCc
Q 001295          807 SNPEEAVPCFALSKND-SYVMSAS-GGKISLFNMMTFK---------TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSS  875 (1106)
Q Consensus       807 ~~~~~~v~~l~~s~~~-~~l~~~s-dg~i~vwd~~~~~---------~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~  875 (1106)
                      .+|.+.|.+++++..+ .++++++ |+++++|++...+         +..+...|...|++++++| +.+++|+|+.|.+
T Consensus       408 ~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDkt  486 (775)
T KOG0319|consen  408 NGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKT  486 (775)
T ss_pred             cccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccc
Confidence            3499999999998766 4788888 9999999997511         1123457999999999999 8999999999999


Q ss_pred             EEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCC
Q 001295          876 IQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD  955 (1106)
Q Consensus       876 v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~d  955 (1106)
                      .+||++..+.+..+|.||...|++|.|+|..+.|+++|.|++|+||.+++.     .+++.++||..   .|..+.|-.+
T Consensus       487 aKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f-----SClkT~eGH~~---aVlra~F~~~  558 (775)
T KOG0319|consen  487 AKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF-----SCLKTFEGHTS---AVLRASFIRN  558 (775)
T ss_pred             eeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc-----eeeeeecCccc---eeEeeeeeeC
Confidence            999999999999999999999999999999999999999999999999984     47889999985   8999999999


Q ss_pred             CcEEEE-EeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCC
Q 001295          956 QIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1018 (1106)
Q Consensus       956 g~~l~~-~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~ 1018 (1106)
                      |++|++ +.||-+++|++++.+|+.++.  +|...|++++.+++..+++||+.||.|.+|.=.|
T Consensus       559 ~~qliS~~adGliKlWnikt~eC~~tlD--~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T  620 (775)
T KOG0319|consen  559 GKQLISAGADGLIKLWNIKTNECEMTLD--AHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT  620 (775)
T ss_pred             CcEEEeccCCCcEEEEeccchhhhhhhh--hccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence            999999 699999999999999999986  8999999999999999999999999999996443

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2e-51  Score=437.29  Aligned_cols=571  Identities=18%  Similarity=0.296  Sum_probs=445.8

Q ss_pred             eccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCC
Q 001295          346 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  425 (1106)
Q Consensus       346 ~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~  425 (1106)
                      .+.+...|++++.||+|.. +++-...|...+-++.....++..+|                    +.+|.|+.|||||+
T Consensus        51 ~~e~~~NI~~ialSp~g~l-llavdE~g~~~lvs~~~r~Vlh~f~f--------------------k~~v~~i~fSPng~  109 (893)
T KOG0291|consen   51 PLETRYNITRIALSPDGTL-LLAVDERGRALLVSLLSRSVLHRFNF--------------------KRGVGAIKFSPNGK  109 (893)
T ss_pred             EeecCCceEEEEeCCCceE-EEEEcCCCcEEEEecccceeeEEEee--------------------cCccceEEECCCCc
Confidence            3448899999999999995 66667789999999988888776544                    34899999999999


Q ss_pred             EEEEEeCCCeEEEEEccCCce-----eeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCce--eEEEe
Q 001295          426 LFGVAYSRHIVQIYSYHGGDE-----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK--QYIFE  498 (1106)
Q Consensus       426 ~las~~~d~~v~iwd~~~~~~-----~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~  498 (1106)
                      ++|.|. .+.+.||.......     .....++.+|...|.++.|+.|.+  +|++|+.|.++++|+++..+-  .+.+.
T Consensus       110 ~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr--~l~~gsrD~s~rl~~v~~~k~~~~~~l~  186 (893)
T KOG0291|consen  110 FFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSR--LLVTGSRDLSARLFGVDGNKNLFTYALN  186 (893)
T ss_pred             EEEEEe-cceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCc--eEEeccccceEEEEEeccccccceEecc
Confidence            999885 46799998765322     234456789999999999999999  899999999999999986655  67889


Q ss_pred             ccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEe-----eC---------CCCeeEEEEEecCCCeEEEee
Q 001295          499 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-----EA---------PGRWCTTMAYSADGTRTYQGF  564 (1106)
Q Consensus       499 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----~~---------~~~~v~~~~~s~~~~~~~~~~  564 (1106)
                      +|.+.|.+.-|..+  ...+++.+.||.+.+|..........-     .+         ....+..+.|..-. +.+...
T Consensus       187 gHkd~VvacfF~~~--~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~-k~~ln~  263 (893)
T KOG0291|consen  187 GHKDYVVACFFGAN--SLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTK-KHYLNQ  263 (893)
T ss_pred             CCCcceEEEEeccC--cceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEE-eeeecc
Confidence            99999988877543  367999999999999987632111100     00         00011111111111 112222


Q ss_pred             eccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCC-CcEEEEEccCCc
Q 001295          565 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-NGIKILATSDGI  643 (1106)
Q Consensus       565 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-g~i~iwd~~~~~  643 (1106)
                      ....+++.+|++..+.|++|-..|...+|.+....+++.+....+  .|..++|+..|.+|+.|+.. |.+.||+..+..
T Consensus       264 ~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~--~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs  341 (893)
T KOG0291|consen  264 NSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQ--KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES  341 (893)
T ss_pred             cccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccc--eeeEEEecccCCEEEEcCCccceEEEEEeeccc
Confidence            235788999999999999999999999999999999999986644  79999999999999998764 789999886651


Q ss_pred             hhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEec
Q 001295          644 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL  723 (1106)
Q Consensus       644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~  723 (1106)
                       .+-                                                                            
T Consensus       342 -YVl----------------------------------------------------------------------------  344 (893)
T KOG0291|consen  342 -YVL----------------------------------------------------------------------------  344 (893)
T ss_pred             -eee----------------------------------------------------------------------------
Confidence             111                                                                            


Q ss_pred             CCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccc
Q 001295          724 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND  803 (1106)
Q Consensus       724 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  803 (1106)
                                    ...+|...+.+++++|||+++++|++||.|+|||..                      +|.+... 
T Consensus       345 --------------KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~----------------------SgfC~vT-  387 (893)
T KOG0291|consen  345 --------------KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ----------------------SGFCFVT-  387 (893)
T ss_pred             --------------eccccccceeeEEECCCCcEEEeccCCCcEEEEecc----------------------CceEEEE-
Confidence                          113488899999999999999999999999998865                      4443322 


Q ss_pred             cCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCC-CCeeEEEEecCCCceEEEeeCCC-cEEEEE
Q 001295          804 VTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNIIAIGMDDS-SIQIYN  880 (1106)
Q Consensus       804 ~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~-~~v~~l~~s~~d~~~la~g~~dg-~v~iwd  880 (1106)
                      +.  .|.+.|+.+.|+..|+.+++.+ ||+|+.||+..++..+++.... -...|++..| .|.++..|+.|. .|+||+
T Consensus       388 Ft--eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS  464 (893)
T KOG0291|consen  388 FT--EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWS  464 (893)
T ss_pred             ec--cCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcC-CCCEEEeeccceEEEEEEE
Confidence            22  3999999999999999999999 9999999999999999987543 3467888888 788998888886 799999


Q ss_pred             eecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEE
Q 001295          881 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL  960 (1106)
Q Consensus       881 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~  960 (1106)
                      +++|+++..+.||.++|.+++|+|++..|||+|.|.+|++||+-..... ...+...       ..+..++|+|||+.|+
T Consensus       465 ~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~-vEtl~i~-------sdvl~vsfrPdG~ela  536 (893)
T KOG0291|consen  465 VQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGT-VETLEIR-------SDVLAVSFRPDGKELA  536 (893)
T ss_pred             eecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCce-eeeEeec-------cceeEEEEcCCCCeEE
Confidence            9999999999999999999999999999999999999999998763211 1122222       3578999999999999


Q ss_pred             E-EeCCeEEEEecCCceEeeecccC------------------CCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCcee
Q 001295          961 V-VHETQLAIFETTKLECVKQWVPR------------------ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL 1021 (1106)
Q Consensus       961 ~-~~d~~v~i~d~~~~~~~~~~~~~------------------~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~ 1021 (1106)
                      + .-||.|.+||+..+..+..+...                  ......+.|++|+||.++++|+....|++|++.++.+
T Consensus       537 VaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vl  616 (893)
T KOG0291|consen  537 VATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVL  616 (893)
T ss_pred             EEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhhe
Confidence            9 58999999999887665443211                  1246789999999999999999999999999999888


Q ss_pred             EEeeCCCc--------------------------------------ccC--------CCCCCCCccceEEEEeCCCCCEE
Q 001295         1022 RCRINPSA--------------------------------------YLP--------AGVSSSNVHPLVIAAHPQEPNEF 1055 (1106)
Q Consensus      1022 ~~~~~~~~--------------------------------------~~~--------~~~~~~~v~~~~~~~~~~d~~~l 1055 (1106)
                      +.+++.+.                                      .+|        ..+....|...++.|+| .|+-+
T Consensus       617 lkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsP-tgraF  695 (893)
T KOG0291|consen  617 LKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSP-TGRAF  695 (893)
T ss_pred             eeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEECC-CcCee
Confidence            77665211                                      000        01223346667999999 58899


Q ss_pred             EEEeCCCcEEEEeecCC
Q 001295         1056 ALGLSDGGVHVFEPLES 1072 (1106)
Q Consensus      1056 ~t~~~Dg~v~vW~~~~~ 1072 (1106)
                      ++++..| |.|+.+.+.
T Consensus       696 AaatTEG-l~IYsld~~  711 (893)
T KOG0291|consen  696 AAATTEG-LLIYSLDTT  711 (893)
T ss_pred             eeecccc-eEEEecCCc
Confidence            9988877 567776553

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=8.4e-51  Score=415.65  Aligned_cols=576  Identities=14%  Similarity=0.152  Sum_probs=430.9

Q ss_pred             EEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeCC
Q 001295          354 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR  433 (1106)
Q Consensus       354 ~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d  433 (1106)
                      .-+.-.|.|+.++.+.+  +.|.+-++++.....                   ++.+|...++-..|||.|.|+|+|...
T Consensus        22 ~~ig~dpkgd~ilY~nG--ksv~ir~i~~~~~~~-------------------iYtEH~~~vtVAkySPsG~yiASGD~s   80 (603)
T KOG0318|consen   22 IIIGGDPKGDNILYTNG--KSVIIRNIDNPASVD-------------------IYTEHAHQVTVAKYSPSGFYIASGDVS   80 (603)
T ss_pred             eEeccCCCCCeEEEeCC--CEEEEEECCCcccee-------------------eeccccceeEEEEeCCCceEEeecCCc
Confidence            34455677887777544  678888888765543                   478999999999999999999999999


Q ss_pred             CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEe-cCCCcEEEEeCCCCceeEEEeccCCCeEEEecccc
Q 001295          434 HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC-GDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHK  512 (1106)
Q Consensus       434 ~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~  512 (1106)
                      |+|+|||....+.+ ...+++.-.++|..|+|+.|+++ ++++| +.++..+++-.++|..+..+.||...|+++.|-++
T Consensus        81 G~vRIWdtt~~~hi-LKnef~v~aG~I~Di~Wd~ds~R-I~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~Kps  158 (603)
T KOG0318|consen   81 GKVRIWDTTQKEHI-LKNEFQVLAGPIKDISWDFDSKR-IAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPS  158 (603)
T ss_pred             CcEEEEeccCccee-eeeeeeecccccccceeCCCCcE-EEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCC
Confidence            99999998764433 22356677899999999999996 33333 33444444444578889999999999999999877


Q ss_pred             CCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEE
Q 001295          513 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF  592 (1106)
Q Consensus       513 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i  592 (1106)
                      .. -.+++|+.|++|.+|+=...+-...+..|...|.+                     +.|+|||+++++.+.||.|.+
T Consensus       159 RP-fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~---------------------VRysPDG~~Fat~gsDgki~i  216 (603)
T KOG0318|consen  159 RP-FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNC---------------------VRYSPDGSRFATAGSDGKIYI  216 (603)
T ss_pred             Cc-eEEEeccCCCeEEEeeCCCeeeeecccccccceee---------------------EEECCCCCeEEEecCCccEEE
Confidence            65 58999999999999964433333344445554554                     455555558999999999999


Q ss_pred             EECCCcceeEEEc-cCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchh
Q 001295          593 WDMDSVQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPIS  671 (1106)
Q Consensus       593 wd~~~~~~~~~~~-~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  671 (1106)
                      ||-.+|+.+..+. ...|.+.|.+++|+||+..+++++.|.+++|||+.+. .+.+.+.-....                
T Consensus       217 yDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~-slv~t~~~~~~v----------------  279 (603)
T KOG0318|consen  217 YDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTN-SLVSTWPMGSTV----------------  279 (603)
T ss_pred             EcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeecc-ceEEEeecCCch----------------
Confidence            9999999999997 3445668999999999999999999999999999988 555544321110                


Q ss_pred             hhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEE
Q 001295          672 AAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIF  751 (1106)
Q Consensus       672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  751 (1106)
                                              -...+.+......+++.+.+|.+..++..........       .+|...|++++.
T Consensus       280 ------------------------~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i-------~GHnK~ITaLtv  328 (603)
T KOG0318|consen  280 ------------------------EDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVI-------SGHNKSITALTV  328 (603)
T ss_pred             ------------------------hceEEEEEEeCCeEEEEEcCcEEEEecccCCChhhee-------cccccceeEEEE
Confidence                                    0111223334678999999999999998875522221       579999999999


Q ss_pred             cCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEeCC
Q 001295          752 TNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGG  831 (1106)
Q Consensus       752 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg  831 (1106)
                      ++++++|++++.||.|.-|+...+..                        ..+.+..|...|.+++.+..+.++-++-|.
T Consensus       329 ~~d~~~i~SgsyDG~I~~W~~~~g~~------------------------~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd  384 (603)
T KOG0318|consen  329 SPDGKTIYSGSYDGHINSWDSGSGTS------------------------DRLAGKGHTNQIKGMAASESGELFTIGWDD  384 (603)
T ss_pred             cCCCCEEEeeccCceEEEEecCCccc------------------------cccccccccceEEEEeecCCCcEEEEecCC
Confidence            99999999999999999998653211                        113334599999999999888777777799


Q ss_pred             eEEEEEcCCCceeee--ecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEE
Q 001295          832 KISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVL  909 (1106)
Q Consensus       832 ~i~vwd~~~~~~~~~--~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l  909 (1106)
                      ++++.++........  ++- .....+++..+ ++.+++..+.++.+.+=|...   +.... -.-...+++++|++..+
T Consensus       385 ~l~~~~~~~~~~t~~~~~~l-g~QP~~lav~~-d~~~avv~~~~~iv~l~~~~~---~~~~~-~~y~~s~vAv~~~~~~v  458 (603)
T KOG0318|consen  385 TLRVISLKDNGYTKSEVVKL-GSQPKGLAVLS-DGGTAVVACISDIVLLQDQTK---VSSIP-IGYESSAVAVSPDGSEV  458 (603)
T ss_pred             eEEEEecccCcccccceeec-CCCceeEEEcC-CCCEEEEEecCcEEEEecCCc---ceeec-cccccceEEEcCCCCEE
Confidence            999999865433222  121 22234888888 666777666655544433322   12221 22346789999999999


Q ss_pred             EEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeEEEEecCCceEeeecccCCCCC
Q 001295          910 VSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSA  988 (1106)
Q Consensus       910 ~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v~i~d~~~~~~~~~~~~~~h~~  988 (1106)
                      |.|+.|+.|.||.+...+......+.   .|.   ..|+.++||||+.|||++ ..+.+.+||+.+.+..... -.-|..
T Consensus       459 aVGG~Dgkvhvysl~g~~l~ee~~~~---~h~---a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~-w~FHta  531 (603)
T KOG0318|consen  459 AVGGQDGKVHVYSLSGDELKEEAKLL---EHR---AAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNR-WAFHTA  531 (603)
T ss_pred             EEecccceEEEEEecCCcccceeeee---ccc---CCceEEEECCCCcEEEEeccCCcEEEEEcccCceecce-eeeeee
Confidence            99999999999999886643222222   222   489999999999999997 6789999999988773322 225899


Q ss_pred             CeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEe
Q 001295          989 PITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFE 1068 (1106)
Q Consensus       989 ~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~ 1068 (1106)
                      .|.+++|+|+..++|||+.|-+|.||+++.-...-.++      ..|..+ |+  .+.|.  |...+++.+.|.+|++|+
T Consensus       532 kI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ik------nAH~~g-Vn--~v~wl--de~tvvSsG~Da~iK~W~  600 (603)
T KOG0318|consen  532 KINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIK------NAHLGG-VN--SVAWL--DESTVVSSGQDANIKVWN  600 (603)
T ss_pred             eEEEEEeCCCceEEEeccccceEEEEEccChhhheEec------cccccC-ce--eEEEe--cCceEEeccCcceeEEec
Confidence            99999999999999999999999999998765553333      233344 77  78888  578999999999999999


Q ss_pred             ec
Q 001295         1069 PL 1070 (1106)
Q Consensus      1069 ~~ 1070 (1106)
                      +.
T Consensus       601 v~  602 (603)
T KOG0318|consen  601 VT  602 (603)
T ss_pred             cc
Confidence            74

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.4e-54  Score=423.80  Aligned_cols=377  Identities=21%  Similarity=0.346  Sum_probs=301.6

Q ss_pred             CCCCCCCCCCcceeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCC
Q 001295          331 QAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD  410 (1106)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  410 (1106)
                      ++++............-+|..+|-|++|+|+|++ ||+|+.|.++++||+.+...+.                   +.++
T Consensus        96 qavfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~~-l~tGsGD~TvR~WD~~TeTp~~-------------------t~Kg  155 (480)
T KOG0271|consen   96 QAVFRVRPVTRCSSSIAGHGEAVLSVQFSPTGSR-LVTGSGDTTVRLWDLDTETPLF-------------------TCKG  155 (480)
T ss_pred             chhhcccccceeccccCCCCCcEEEEEecCCCce-EEecCCCceEEeeccCCCCcce-------------------eecC
Confidence            3455555555555556679999999999999996 9999999999999999887766                   4799


Q ss_pred             CCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcC-----CCCceEEEEecCCCcEEE
Q 001295          411 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-----PNKQLCVITCGDDKTIKV  485 (1106)
Q Consensus       411 h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~-----d~~~~~l~s~~~d~~i~i  485 (1106)
                      |...|.|++|||||+.||+|+.||+|++||.++|+++..  .|.+|...|++++|-|     ..+  +|++++.||+|+|
T Consensus       156 H~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrI  231 (480)
T KOG0271|consen  156 HKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRI  231 (480)
T ss_pred             CccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEE
Confidence            999999999999999999999999999999999987754  5889999999999965     455  7999999999999


Q ss_pred             EeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeee
Q 001295          486 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR  565 (1106)
Q Consensus       486 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~  565 (1106)
                      ||+..+.++..+.||+.+|+|++|-.  + .++++|+.|++|++|+...+.....+.+|.++|+.++.+.|--       
T Consensus       232 Wd~~~~~~~~~lsgHT~~VTCvrwGG--~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~-------  301 (480)
T KOG0271|consen  232 WDTKLGTCVRTLSGHTASVTCVRWGG--E-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYV-------  301 (480)
T ss_pred             EEccCceEEEEeccCccceEEEEEcC--C-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhh-------
Confidence            99999999999999999999999842  3 4999999999999999999888899999999999998876642       


Q ss_pred             ccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCC-CCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCch
Q 001295          566 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG-LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR  644 (1106)
Q Consensus       566 ~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~  644 (1106)
                                     |-+|..|.+        +.....+..... ...-.....-..+..|++|++|.++.+|+.....+
T Consensus       302 ---------------LRtgaf~~t--------~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk  358 (480)
T KOG0271|consen  302 ---------------LRTGAFDHT--------GRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK  358 (480)
T ss_pred             ---------------hhccccccc--------cccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc
Confidence                           222222210        000000000000 00000000011223444444444444443221111


Q ss_pred             hhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecC
Q 001295          645 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT  724 (1106)
Q Consensus       645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~  724 (1106)
                      +                                                                               
T Consensus       359 p-------------------------------------------------------------------------------  359 (480)
T KOG0271|consen  359 P-------------------------------------------------------------------------------  359 (480)
T ss_pred             c-------------------------------------------------------------------------------
Confidence            1                                                                               


Q ss_pred             CCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCcccccc
Q 001295          725 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV  804 (1106)
Q Consensus       725 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  804 (1106)
                                                                                                 +.. +
T Consensus       360 ---------------------------------------------------------------------------i~r-m  363 (480)
T KOG0271|consen  360 ---------------------------------------------------------------------------ITR-M  363 (480)
T ss_pred             ---------------------------------------------------------------------------hhh-h
Confidence                                                                                       110 2


Q ss_pred             CCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeec
Q 001295          805 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV  883 (1106)
Q Consensus       805 ~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~  883 (1106)
                      .  +|..-|..+.||||++++|+++ |..|++|+..+|+.+.+|++|-..|..++|+. |.++|++|+.|.++++|++.+
T Consensus       364 t--gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLKvw~V~t  440 (480)
T KOG0271|consen  364 T--GHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLKVWDVRT  440 (480)
T ss_pred             h--chhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEEEEEeee
Confidence            2  2888899999999999999999 99999999999999999999999999999999 999999999999999999999


Q ss_pred             ceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEe
Q 001295          884 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS  922 (1106)
Q Consensus       884 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd  922 (1106)
                      .++...|.||.++|.++.|+|||..+++|+.|..+++|.
T Consensus       441 kKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  441 KKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             eeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence            999999999999999999999999999999999999995

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2e-48  Score=398.29  Aligned_cols=540  Identities=16%  Similarity=0.207  Sum_probs=425.0

Q ss_pred             eeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc
Q 001295          343 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  422 (1106)
Q Consensus       343 ~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp  422 (1106)
                      +..--+|...++-..|||.|.| +|+|...|+|+|||....+.+.+.+|+                 .-.++|..++|++
T Consensus        52 ~~iYtEH~~~vtVAkySPsG~y-iASGD~sG~vRIWdtt~~~hiLKnef~-----------------v~aG~I~Di~Wd~  113 (603)
T KOG0318|consen   52 VDIYTEHAHQVTVAKYSPSGFY-IASGDVSGKVRIWDTTQKEHILKNEFQ-----------------VLAGPIKDISWDF  113 (603)
T ss_pred             eeeeccccceeEEEEeCCCceE-EeecCCcCcEEEEeccCcceeeeeeee-----------------ecccccccceeCC
Confidence            3334459999999999999996 999999999999999876666555544                 3356899999999


Q ss_pred             CCCEEEEEeCC----CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEe
Q 001295          423 DGSLFGVAYSR----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE  498 (1106)
Q Consensus       423 dg~~las~~~d----~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  498 (1106)
                      |+++|++.++.    |.+.+||.  |..+.   .+.||...|++++|-|.-.. .++||++|++|.+|+=.--+...++.
T Consensus       114 ds~RI~avGEGrerfg~~F~~DS--G~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v~ffeGPPFKFk~s~r  187 (603)
T KOG0318|consen  114 DSKRIAAVGEGRERFGHVFLWDS--GNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNTVAFFEGPPFKFKSSFR  187 (603)
T ss_pred             CCcEEEEEecCccceeEEEEecC--CCccc---eeeccceeEeeeeccCCCce-EEEeccCCCeEEEeeCCCeeeeeccc
Confidence            99999987643    34566664  44344   68899999999999998776 89999999999999866666677888


Q ss_pred             ccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEee---CCCCeeEEEEEecCCCeEEEeeeccceeEEEEc
Q 001295          499 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE---APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD  575 (1106)
Q Consensus       499 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~  575 (1106)
                      .|...|.++.|+|  ||.++++.+.||++.+||=.+++.+..+.   .|.+.|..++|+||++                 
T Consensus       188 ~HskFV~~VRysP--DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~-----------------  248 (603)
T KOG0318|consen  188 EHSKFVNCVRYSP--DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDST-----------------  248 (603)
T ss_pred             ccccceeeEEECC--CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCc-----------------
Confidence            9999999999865  46899999999999999999999888877   6777777777777766                 


Q ss_pred             CCCCEEEEEECCCeEEEEECCCcceeEEEccCCCC-CCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhccccc
Q 001295          576 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL-PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY  654 (1106)
Q Consensus       576 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  654 (1106)
                          .+++++.|.+++|||+.+.++++++...... .....+.|-  ...|++.+.+|+|.+++...+ ..++.+.+|..
T Consensus       249 ----~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~-~~~~~i~GHnK  321 (603)
T KOG0318|consen  249 ----QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDP-SVLKVISGHNK  321 (603)
T ss_pred             ----eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCC-Chhheeccccc
Confidence                7999999999999999999999998654331 122344554  678899999999999999998 48999999988


Q ss_pred             ccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCcccee
Q 001295          655 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS  734 (1106)
Q Consensus       655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~  734 (1106)
                      .+...                                         ..++++.++++++.||.|.-|+...+......  
T Consensus       322 ~ITaL-----------------------------------------tv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~--  358 (603)
T KOG0318|consen  322 SITAL-----------------------------------------TVSPDGKTIYSGSYDGHINSWDSGSGTSDRLA--  358 (603)
T ss_pred             ceeEE-----------------------------------------EEcCCCCEEEeeccCceEEEEecCCccccccc--
Confidence            65521                                         23457899999999999999999875543322  


Q ss_pred             cccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCee
Q 001295          735 LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP  814 (1106)
Q Consensus       735 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~  814 (1106)
                          ...|...|.+++.+..+. +++.+.|.++++.++......                  .... .     .......
T Consensus       359 ----g~~h~nqI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t------------------~~~~-~-----~lg~QP~  409 (603)
T KOG0318|consen  359 ----GKGHTNQIKGMAASESGE-LFTIGWDDTLRVISLKDNGYT------------------KSEV-V-----KLGSQPK  409 (603)
T ss_pred             ----cccccceEEEEeecCCCc-EEEEecCCeEEEEecccCccc------------------ccce-e-----ecCCCce
Confidence                245899999999988776 788888889998776432221                  0000 0     0233445


Q ss_pred             EEEEecCCCEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEE--EEecC
Q 001295          815 CFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK--SKLKG  892 (1106)
Q Consensus       815 ~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~--~~l~~  892 (1106)
                      +++..+++.+++.++++.|.+..-.+  .+.+.. ..-...+++++| ++..+|+|++||.|+||.+..+.+.  ..+..
T Consensus       410 ~lav~~d~~~avv~~~~~iv~l~~~~--~~~~~~-~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~  485 (603)
T KOG0318|consen  410 GLAVLSDGGTAVVACISDIVLLQDQT--KVSSIP-IGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLE  485 (603)
T ss_pred             eEEEcCCCCEEEEEecCcEEEEecCC--cceeec-cccccceEEEcC-CCCEEEEecccceEEEEEecCCcccceeeeec
Confidence            89999999888888877777765322  222222 334578999999 9999999999999999999876533  45677


Q ss_pred             cccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEe
Q 001295          893 HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFE  971 (1106)
Q Consensus       893 h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d  971 (1106)
                      |.++|++++||||+.+||++...+.+.+||+.+.+...    ....-|.   ..|.+++|+|+.+++|+ +-|..|.||+
T Consensus       486 h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~----~~w~FHt---akI~~~aWsP~n~~vATGSlDt~Viiys  558 (603)
T KOG0318|consen  486 HRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKT----NRWAFHT---AKINCVAWSPNNKLVATGSLDTNVIIYS  558 (603)
T ss_pred             ccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceec----ceeeeee---eeEEEEEeCCCceEEEeccccceEEEEE
Confidence            99999999999999999999999999999999866522    2222233   37899999999999999 5899999999


Q ss_pred             cCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcC
Q 001295          972 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAA 1017 (1106)
Q Consensus       972 ~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~ 1017 (1106)
                      ++.-... .....+|...|+.+.|- |...|++.+.|..|++|++.
T Consensus       559 v~kP~~~-i~iknAH~~gVn~v~wl-de~tvvSsG~Da~iK~W~v~  602 (603)
T KOG0318|consen  559 VKKPAKH-IIIKNAHLGGVNSVAWL-DESTVVSSGQDANIKVWNVT  602 (603)
T ss_pred             ccChhhh-eEeccccccCceeEEEe-cCceEEeccCcceeEEeccc
Confidence            9875544 23335888889999997 45678888899999999874

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=8.2e-49  Score=417.18  Aligned_cols=613  Identities=14%  Similarity=0.206  Sum_probs=452.4

Q ss_pred             CCCcEEEEEe-cCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEE
Q 001295          350 GSSPMSMDFH-PVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  428 (1106)
Q Consensus       350 ~~~v~~~~~s-p~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  428 (1106)
                      ...+..+..+ ..|++ +|. +..-.|.+||+.+|+.....                 +...-...|+|++-+||.-+||
T Consensus        21 ~aN~~~~~~~~~~Gr~-va~-~a~E~vn~WdlRtge~~~~l-----------------~~~~~k~evt~l~~~~d~l~lA   81 (888)
T KOG0306|consen   21 VANINFVVKRSGKGRA-VAV-SALEQVNIWDLRTGEIEKKL-----------------ILLKKKAEVTCLRSSDDILLLA   81 (888)
T ss_pred             ccceeEEEeecCCCcE-EEE-eccccEeEEeeecchhhhhh-----------------hhhcccceEEEeeccCCcceEE
Confidence            3444444443 45885 332 33468999999999654320                 1223346899999999999999


Q ss_pred             EEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEe
Q 001295          429 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC  508 (1106)
Q Consensus       429 s~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~  508 (1106)
                      +|..||.|+||+..++....   ++.||...|+++.|...|.  .|+|||.|+.|.+||+-...-...+.||...|+.+-
T Consensus        82 VGYaDGsVqif~~~s~~~~~---tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~  156 (888)
T KOG0306|consen   82 VGYADGSVQIFSLESEEILI---TFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQAL  156 (888)
T ss_pred             EEecCceEEeeccCCCceee---eecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHh
Confidence            99999999999999875443   7899999999999999999  899999999999999998888999999999999887


Q ss_pred             ccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCC
Q 001295          509 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF  588 (1106)
Q Consensus       509 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  588 (1106)
                      |..  +.+++++.+.|+.|++||+.+..+..+...|...+..+++.++                       .+++++.|+
T Consensus       157 F~~--~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~-----------------------~lvt~~~ds  211 (888)
T KOG0306|consen  157 FLN--GDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEK-----------------------LLVTAGTDS  211 (888)
T ss_pred             ccC--CCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecc-----------------------eEEEEecCC
Confidence            754  3379999999999999999998888888888888888777662                       589999999


Q ss_pred             eEEEEECCCc-------c-----eeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhccccccc
Q 001295          589 SIKFWDMDSV-------Q-----LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDA  656 (1106)
Q Consensus       589 ~i~iwd~~~~-------~-----~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  656 (1106)
                      .+++|++...       .     ...++... ..+....++..++++++++-+.|..+.++.+.+..+..+.+...-...
T Consensus       212 e~~v~~L~~~~D~~~~~~~~s~~~~G~~~rq-sk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~  290 (888)
T KOG0306|consen  212 ELKVWELAFEDDEKETNRYISTKLRGTFIRQ-SKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRA  290 (888)
T ss_pred             ceEEEEeecccccccccccceeeccceeeec-cCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHh
Confidence            9999998211       0     11111111 122345577778899999999999999999987755444332200000


Q ss_pred             ccCCCCCCCCcCchhhhHhhh--hcccccccccccccccCCCCCCccccCCC-CccccccCCCceeeEecCCCCC--Ccc
Q 001295          657 SRTSENSKPTISPISAAAAAA--ATSAGLADRAASMVSIPGMNGDVRSLADV-KPRITEESNDKSKVWKLTELSE--PNQ  731 (1106)
Q Consensus       657 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~vw~~~~~~~--~~~  731 (1106)
                      ..... .. . ...+......  ............+..     -+....... ..++. -.++++..|.++....  +..
T Consensus       291 Kkka~-t~-e-~~~~v~~sl~~~i~r~~~ir~~~kiks-----~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~  361 (888)
T KOG0306|consen  291 KKKAE-TE-E-NEDDVEKSLSDEIKRLETIRTSAKIKS-----FDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEA  361 (888)
T ss_pred             hhhcc-cc-c-cccchhhhHHHHHHHHHheechhheeE-----EEEEecCCcceeEEE-eecCceEEEEeccCCCCCccc
Confidence            00000 00 0 0000000000  000000000000000     000001111 22333 5567888888776221  112


Q ss_pred             ceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCC
Q 001295          732 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE  811 (1106)
Q Consensus       732 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  811 (1106)
                      .+.-.+...+|...|.+++++.+...++ ++.++.+++|+..                      +.+++...     ...
T Consensus       362 ~~~~~i~~~GHR~dVRsl~vS~d~~~~~-Sga~~SikiWn~~----------------------t~kciRTi-----~~~  413 (888)
T KOG0306|consen  362 DRTSNIEIGGHRSDVRSLCVSSDSILLA-SGAGESIKIWNRD----------------------TLKCIRTI-----TCG  413 (888)
T ss_pred             cccceeeeccchhheeEEEeecCceeee-ecCCCcEEEEEcc----------------------CcceeEEe-----ccc
Confidence            2222233356999999999999987444 4455688888765                      33333321     344


Q ss_pred             CeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeec-----ce
Q 001295          812 AVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-----DE  885 (1106)
Q Consensus       812 ~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~-----~~  885 (1106)
                      .+.+..|-|.++++++|. .|.+.+||+.+...+.+.++|.+.|..++.+| |++.+++|+.|.+|++||..-     |.
T Consensus       414 y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt  492 (888)
T KOG0306|consen  414 YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGT  492 (888)
T ss_pred             cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcc
Confidence            788999999999999999 79999999999999999999999999999999 999999999999999999752     21


Q ss_pred             EEEEec-------CcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcE
Q 001295          886 VKSKLK-------GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH  958 (1106)
Q Consensus       886 ~~~~l~-------~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~  958 (1106)
                      ..+.+.       .-.+.|.|+.+||||++||.+=-|.+|+||-+++-+     +.-.+.||..   +|.++..|||+++
T Consensus       493 ~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlK-----FflsLYGHkL---PV~smDIS~DSkl  564 (888)
T KOG0306|consen  493 QKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLK-----FFLSLYGHKL---PVLSMDISPDSKL  564 (888)
T ss_pred             cceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEeccee-----eeeeeccccc---ceeEEeccCCcCe
Confidence            111111       134679999999999999999999999999999843     4555678876   8999999999999


Q ss_pred             EEE-EeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCC
Q 001295          959 FLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSS 1037 (1106)
Q Consensus       959 l~~-~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 1037 (1106)
                      +++ +.|+.|++|-+.-|.|.+.+.  +|...|.++.|-|+..++.+++.|+.|+-||....+.+..+.       +|+.
T Consensus       565 ivTgSADKnVKiWGLdFGDCHKS~f--AHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~-------~H~~  635 (888)
T KOG0306|consen  565 IVTGSADKNVKIWGLDFGDCHKSFF--AHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLD-------GHHS  635 (888)
T ss_pred             EEeccCCCceEEeccccchhhhhhh--cccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeec-------cchh
Confidence            999 589999999999999999998  899999999999999999999999999999999999998887       6555


Q ss_pred             CCccceEEEEeCCCCCEEEEEeCCCcEEEEeecC
Q 001295         1038 SNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1071 (1106)
Q Consensus      1038 ~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~ 1071 (1106)
                      . ++  +++.+| +|.++++++.|.+|++|.-.+
T Consensus       636 e-v~--cLav~~-~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  636 E-VW--CLAVSP-NGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             e-ee--eeEEcC-CCCeEEeccCCceeEeeeccC
Confidence            5 88  788888 699999999999999999765

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=7.8e-47  Score=402.33  Aligned_cols=540  Identities=15%  Similarity=0.232  Sum_probs=422.0

Q ss_pred             EEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeCC
Q 001295          354 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR  433 (1106)
Q Consensus       354 ~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d  433 (1106)
                      -.+.|++||..++.  ...+.|.|+|+.+++...                   ..-.+...|.+++.||+|.+|++....
T Consensus        18 Gnl~ft~dG~sviS--PvGNrvsv~dLknN~S~T-------------------l~~e~~~NI~~ialSp~g~lllavdE~   76 (893)
T KOG0291|consen   18 GNLVFTKDGNSVIS--PVGNRVSVFDLKNNKSYT-------------------LPLETRYNITRIALSPDGTLLLAVDER   76 (893)
T ss_pred             CcEEECCCCCEEEe--ccCCEEEEEEccCCccee-------------------EEeecCCceEEEEeCCCceEEEEEcCC
Confidence            35789999987443  445799999998765533                   124567789999999999999999999


Q ss_pred             CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCc--------eeEEEeccCCCeE
Q 001295          434 HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA--------KQYIFEGHEAPVY  505 (1106)
Q Consensus       434 ~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~--------~~~~~~~h~~~v~  505 (1106)
                      |...+-++.....++.   + ....+|.++.|||||+  ++|.|. .+.+.||......        ..+++.+|...|.
T Consensus        77 g~~~lvs~~~r~Vlh~---f-~fk~~v~~i~fSPng~--~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~  149 (893)
T KOG0291|consen   77 GRALLVSLLSRSVLHR---F-NFKRGVGAIKFSPNGK--FFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDIT  149 (893)
T ss_pred             CcEEEEecccceeeEE---E-eecCccceEEECCCCc--EEEEEe-cceeEEEecCcchhcccCcceEeeeecCCcccee
Confidence            9998888877544432   1 2457899999999999  455444 5789999865322        2457789999999


Q ss_pred             EEeccccCCceEEEEEecCCeEEEEeCCCCCc--eeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEE
Q 001295          506 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA  583 (1106)
Q Consensus       506 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  583 (1106)
                      ++.|+.+  .++|++|+.|.++++|+++..+.  ...+.+|...|....|..+.                     ..+++
T Consensus       150 si~Ws~D--Sr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~---------------------~~l~t  206 (893)
T KOG0291|consen  150 SIDWSDD--SRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANS---------------------LDLYT  206 (893)
T ss_pred             EEEeccC--CceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCc---------------------ceEEE
Confidence            9999654  47999999999999999987666  33455666666655555554                     46899


Q ss_pred             EECCCeEEEEECCC-----------------------cce---------eEEEccCCCCCCcCeEEEccCCCEEEEEeCC
Q 001295          584 AGDDFSIKFWDMDS-----------------------VQL---------LTSIDADGGLPASPRIRFNKDGCLLAVSTND  631 (1106)
Q Consensus       584 ~~~d~~i~iwd~~~-----------------------~~~---------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d  631 (1106)
                      .+.||.+.+|....                       ++.         ....-.......|++.+|++..+.|++|-..
T Consensus       207 vskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFss  286 (893)
T KOG0291|consen  207 VSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSS  286 (893)
T ss_pred             EecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecC
Confidence            99999999998751                       111         0000111122468888999988999999998


Q ss_pred             CcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCcccc
Q 001295          632 NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRIT  711 (1106)
Q Consensus       632 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  711 (1106)
                      |.+.+|++.+- .+++.+                                                              
T Consensus       287 G~f~LyelP~f-~lih~L--------------------------------------------------------------  303 (893)
T KOG0291|consen  287 GEFGLYELPDF-NLIHSL--------------------------------------------------------------  303 (893)
T ss_pred             CeeEEEecCCc-eEEEEe--------------------------------------------------------------
Confidence            98888887543 222211                                                              


Q ss_pred             ccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecC-ceEEEeeccccccCCCCccccccCcc
Q 001295          712 EESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN-AIHLLWKWQRTERNSSGKATASVAPQ  790 (1106)
Q Consensus       712 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~  790 (1106)
                                                  .....+|..++|+..|..++.++.. |.+.||+++.+.+-            
T Consensus       304 ----------------------------Sis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYV------------  343 (893)
T KOG0291|consen  304 ----------------------------SISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYV------------  343 (893)
T ss_pred             ----------------------------ecccceeeEEEecccCCEEEEcCCccceEEEEEeecccee------------
Confidence                                        0134678999999999999999986 99999998754331            


Q ss_pred             ccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEE
Q 001295          791 LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAI  869 (1106)
Q Consensus       791 ~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~  869 (1106)
                                   ++.++|...+++++++|||+++|+|+ ||+|+|||..++-|..+|..|...|+.+.|+. .++.+++
T Consensus       344 -------------lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~-~g~~lls  409 (893)
T KOG0291|consen  344 -------------LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTA-RGNVLLS  409 (893)
T ss_pred             -------------eeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEe-cCCEEEE
Confidence                         22245999999999999999999999 89999999999999999999999999999999 9999999


Q ss_pred             eeCCCcEEEEEeecceEEEEecCcc-cCeeEEEEecCCCEEEEEcCCC-cEEEEeCCCcccccceeecccCCCCCCCCCC
Q 001295          870 GMDDSSIQIYNVRVDEVKSKLKGHS-KRITGLAFSHALNVLVSSGADS-QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD  947 (1106)
Q Consensus       870 g~~dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~~s~d~~~l~s~s~Dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i  947 (1106)
                      .+-||+|+.||+...+..+++.... -...||+..|.|..++.|+.|. .|.||++++|+     .+.++.||..   +|
T Consensus       410 sSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq-----llDiLsGHEg---PV  481 (893)
T KOG0291|consen  410 SSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ-----LLDILSGHEG---PV  481 (893)
T ss_pred             eecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe-----eeehhcCCCC---cc
Confidence            9999999999999999999997643 3456788888899999999886 49999999965     5788888874   99


Q ss_pred             ceEEEcCCCcEEEE-EeCCeEEEEecCCc-eEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEee
Q 001295          948 TRVQFHQDQIHFLV-VHETQLAIFETTKL-ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1025 (1106)
Q Consensus       948 ~~~~~s~dg~~l~~-~~d~~v~i~d~~~~-~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~ 1025 (1106)
                      .+++|+|+|..|++ +-|++|++||+-.. ..+..+   .+...++.++|+|||+-|++++.||.|.+||+..+.....+
T Consensus       482 s~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl---~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~I  558 (893)
T KOG0291|consen  482 SGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL---EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSI  558 (893)
T ss_pred             eeeEEccccCeEEeccccceEEEEEeeccCceeeeE---eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccc
Confidence            99999999999999 69999999998554 233333   34789999999999999999999999999999988777555


Q ss_pred             CCCcccCCC----------CCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCC
Q 001295         1026 NPSAYLPAG----------VSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus      1026 ~~~~~~~~~----------~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
                      .....+..|          +....-.-..++|++ ||..+++|+..+.|.++++.++-
T Consensus       559 dgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySa-DG~~IlAgG~sn~iCiY~v~~~v  615 (893)
T KOG0291|consen  559 DGRKDLSGGRKETDRITAENSAKGKTFTTICYSA-DGKCILAGGESNSICIYDVPEGV  615 (893)
T ss_pred             cchhhccccccccceeehhhcccCCceEEEEEcC-CCCEEEecCCcccEEEEECchhh
Confidence            432222222          111112234899999 79999999999999999998876

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3e-48  Score=412.93  Aligned_cols=510  Identities=13%  Similarity=0.212  Sum_probs=404.0

Q ss_pred             CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEE
Q 001295          349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  428 (1106)
Q Consensus       349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  428 (1106)
                      ...+|+|+.-+|+.- +||.|..||.|+||+..++..+.                   .+.||...|+++.|...|.+||
T Consensus        64 ~k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~-------------------tfngHK~AVt~l~fd~~G~rla  123 (888)
T KOG0306|consen   64 KKAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILI-------------------TFNGHKAAVTTLKFDKIGTRLA  123 (888)
T ss_pred             ccceEEEeeccCCcc-eEEEEecCceEEeeccCCCceee-------------------eecccccceEEEEEcccCceEe
Confidence            446899999999887 69999999999999999876554                   3789999999999999999999


Q ss_pred             EEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEe
Q 001295          429 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC  508 (1106)
Q Consensus       429 s~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~  508 (1106)
                      +||.|+.|.+||+-...-..   .+.||.+.|+..-|..+.+  ++++.+.|+.|++||+++..|..+...|.+.+++++
T Consensus       124 SGskDt~IIvwDlV~E~Gl~---rL~GHkd~iT~~~F~~~~~--~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~  198 (888)
T KOG0306|consen  124 SGSKDTDIIVWDLVGEEGLF---RLRGHKDSITQALFLNGDS--FLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALV  198 (888)
T ss_pred             ecCCCccEEEEEeccceeeE---EeecchHHHhHHhccCCCe--EEEEeccCceEEEEecccceeeeEEecccceEEEEE
Confidence            99999999999998754333   6899999999999998777  899999999999999999999999999999999999


Q ss_pred             ccccCCceEEEEEecCCeEEEEeCCCCCce------------eEe-eCCCCeeEEEEEecCCCeEE--------------
Q 001295          509 PHHKENIQFIFSTALDGKIKAWLYDNLGSR------------VDY-EAPGRWCTTMAYSADGTRTY--------------  561 (1106)
Q Consensus       509 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~------------~~~-~~~~~~v~~~~~s~~~~~~~--------------  561 (1106)
                      +..    +.+++++.|+.+++|++......            -.+ ....+....+...++++.++              
T Consensus       199 ~~~----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~  274 (888)
T KOG0306|consen  199 LDE----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIR  274 (888)
T ss_pred             Eec----ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeec
Confidence            754    57999999999999998211000            000 00111122222223332100              


Q ss_pred             -----------------------------------------EeeeccceeEEEEcCCCCE--EEEEECCCeEEEEECCC-
Q 001295          562 -----------------------------------------QGFRKRSLGVVQFDTTKNR--FLAAGDDFSIKFWDMDS-  597 (1106)
Q Consensus       562 -----------------------------------------~~~~~~~i~~~~~~~~~~~--l~~~~~d~~i~iwd~~~-  597 (1106)
                                                               .-.....+..+++.|.+..  .+..-.++++..|.+.. 
T Consensus       275 s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s  354 (888)
T KOG0306|consen  275 SKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENS  354 (888)
T ss_pred             CHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccC
Confidence                                                     0011224555666665432  22236678888888765 


Q ss_pred             cc------eeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchh
Q 001295          598 VQ------LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPIS  671 (1106)
Q Consensus       598 ~~------~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  671 (1106)
                      +.      .+..+...+|...|.+++++.+...+++|.. +.+.+|+..+. ++++++                      
T Consensus       355 ~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~-kciRTi----------------------  410 (888)
T KOG0306|consen  355 GKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTL-KCIRTI----------------------  410 (888)
T ss_pred             CCCCccccccceeeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCc-ceeEEe----------------------
Confidence            21      2233444455678999999999888887765 79999998877 444433                      


Q ss_pred             hhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEE
Q 001295          672 AAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIF  751 (1106)
Q Consensus       672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  751 (1106)
                                                                                            ....+.+..|
T Consensus       411 ----------------------------------------------------------------------~~~y~l~~~F  420 (888)
T KOG0306|consen  411 ----------------------------------------------------------------------TCGYILASKF  420 (888)
T ss_pred             ----------------------------------------------------------------------ccccEEEEEe
Confidence                                                                                  2236778899


Q ss_pred             cCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-C
Q 001295          752 TNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-G  830 (1106)
Q Consensus       752 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-d  830 (1106)
                      .|.+++++.|..+|.+.+||+...                      ..+.. ++  .|.+.|.+++.+||++.+++|+ |
T Consensus       421 vpgd~~Iv~G~k~Gel~vfdlaS~----------------------~l~Et-i~--AHdgaIWsi~~~pD~~g~vT~saD  475 (888)
T KOG0306|consen  421 VPGDRYIVLGTKNGELQVFDLASA----------------------SLVET-IR--AHDGAIWSISLSPDNKGFVTGSAD  475 (888)
T ss_pred             cCCCceEEEeccCCceEEEEeehh----------------------hhhhh-hh--ccccceeeeeecCCCCceEEecCC
Confidence            999999999999999999987632                      21111 12  3999999999999999999999 9


Q ss_pred             CeEEEEEcCC-----Ccee--------eeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCe
Q 001295          831 GKISLFNMMT-----FKTM--------ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI  897 (1106)
Q Consensus       831 g~i~vwd~~~-----~~~~--------~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V  897 (1106)
                      .+|++||..-     +...        +++. -...|.|+.+|| |+++||++--|.+|+||-+++.+..-.|.||.-+|
T Consensus       476 ktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV  553 (888)
T KOG0306|consen  476 KTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPV  553 (888)
T ss_pred             cEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcC-CCcEEEEEeccCeEEEEEecceeeeeeecccccce
Confidence            9999999741     1111        1222 346799999999 99999999999999999999999999999999999


Q ss_pred             eEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEecCCce
Q 001295          898 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLE  976 (1106)
Q Consensus       898 ~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d~~~~~  976 (1106)
                      .||..|||++.+++||.|.+|+||-++-|++.+.     .-+|.   .+|.++.|-|...++.+ +.|+.|+-||..+.+
T Consensus       554 ~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS-----~fAHd---DSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe  625 (888)
T KOG0306|consen  554 LSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKS-----FFAHD---DSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFE  625 (888)
T ss_pred             eEEeccCCcCeEEeccCCCceEEeccccchhhhh-----hhccc---CceeEEEEcccceeEEEecCcceEEeechhhhh
Confidence            9999999999999999999999999998776442     33444   38999999999888887 799999999999999


Q ss_pred             EeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCC
Q 001295          977 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1018 (1106)
Q Consensus       977 ~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~ 1018 (1106)
                      ++..+.  +|...|+|++.+|+|.+++++|.|.+|++|.-..
T Consensus       626 ~iq~L~--~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  626 EIQKLD--GHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             hheeec--cchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence            999887  9999999999999999999999999999998655

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.3e-50  Score=397.50  Aligned_cols=364  Identities=18%  Similarity=0.247  Sum_probs=299.9

Q ss_pred             ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEE
Q 001295          407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  486 (1106)
Q Consensus       407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw  486 (1106)
                      .+.||.++|.|++|||+|+.||+|+.|.++++||+.+.....   +.++|...|.|++|+|||+  .|++|+.||+|++|
T Consensus       110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lw  184 (480)
T KOG0271|consen  110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLW  184 (480)
T ss_pred             ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcc--hhhccccCCeEEEe
Confidence            578999999999999999999999999999999999976444   7899999999999999999  79999999999999


Q ss_pred             eCCCCcee-EEEeccCCCeEEEeccc---cCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEE
Q 001295          487 DATNGAKQ-YIFEGHEAPVYSVCPHH---KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ  562 (1106)
Q Consensus       487 d~~~~~~~-~~~~~h~~~v~~~~~~~---~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~  562 (1106)
                      |.++|+++ ..|.+|...|++++|.|   .+...+|++++.||.|+|||+..+..+..+.+|...|+++.|-.+|     
T Consensus       185 dpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-----  259 (480)
T KOG0271|consen  185 DPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-----  259 (480)
T ss_pred             cCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-----
Confidence            99998876 68999999999999865   3566799999999999999999999999999999999999998777     


Q ss_pred             eeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295          563 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       563 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                                       ++++|+.|++|++|+...|.+.+.+++|.+  .|+.++.+-|- .              ++++
T Consensus       260 -----------------liySgS~DrtIkvw~a~dG~~~r~lkGHah--wvN~lalsTdy-~--------------LRtg  305 (480)
T KOG0271|consen  260 -----------------LIYSGSQDRTIKVWRALDGKLCRELKGHAH--WVNHLALSTDY-V--------------LRTG  305 (480)
T ss_pred             -----------------eEEecCCCceEEEEEccchhHHHhhcccch--heeeeeccchh-h--------------hhcc
Confidence                             599999999999999999999999999877  78888876431 1              1122


Q ss_pred             chhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEe
Q 001295          643 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK  722 (1106)
Q Consensus       643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~  722 (1106)
                                             +|.+.+                                            ...+   
T Consensus       306 -----------------------af~~t~--------------------------------------------~~~~---  315 (480)
T KOG0271|consen  306 -----------------------AFDHTG--------------------------------------------RKPK---  315 (480)
T ss_pred             -----------------------cccccc--------------------------------------------ccCC---
Confidence                                   111111                                            0000   


Q ss_pred             cCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCcccc
Q 001295          723 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN  802 (1106)
Q Consensus       723 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  802 (1106)
                        .   ....+..                                                               -+. 
T Consensus       316 --~---~se~~~~---------------------------------------------------------------Al~-  326 (480)
T KOG0271|consen  316 --S---FSEEQKK---------------------------------------------------------------ALE-  326 (480)
T ss_pred             --C---hHHHHHH---------------------------------------------------------------HHH-
Confidence              0   0000000                                                               000 


Q ss_pred             ccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcC-CCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEE
Q 001295          803 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMM-TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN  880 (1106)
Q Consensus       803 ~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~-~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd  880 (1106)
                            .    +..+.-..+..|++|+ |.++.+|+-. +.+++..+.+|...|+.+.||| |++++|+++-|..|++||
T Consensus       327 ------r----Y~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP-d~r~IASaSFDkSVkLW~  395 (480)
T KOG0271|consen  327 ------R----YEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP-DGRYIASASFDKSVKLWD  395 (480)
T ss_pred             ------H----HHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECC-CccEEEEeecccceeeee
Confidence                  0    0001112346788888 6889999865 4457788899999999999999 999999999999999999


Q ss_pred             eecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEE
Q 001295          881 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL  960 (1106)
Q Consensus       881 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~  960 (1106)
                      ..+|+.+..|+||-+.|+.++||.|.++|+||+.|.+++||++++.+.                                
T Consensus       396 g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl--------------------------------  443 (480)
T KOG0271|consen  396 GRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKL--------------------------------  443 (480)
T ss_pred             CCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeee--------------------------------
Confidence            999999999999999999999999999999999999999999988321                                


Q ss_pred             EEeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEE
Q 001295          961 VVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1015 (1106)
Q Consensus       961 ~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd 1015 (1106)
                                       ...+  .+|...|.++.|+|||..+++|+.|..+++|.
T Consensus       444 -----------------~~DL--pGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  444 -----------------KQDL--PGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             -----------------cccC--CCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence                             1111  27888999999999999999999999999985

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=2.3e-46  Score=394.61  Aligned_cols=637  Identities=15%  Similarity=0.164  Sum_probs=433.6

Q ss_pred             CcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEe
Q 001295          352 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY  431 (1106)
Q Consensus       352 ~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~  431 (1106)
                      .-..++.+|... ++|. -....|.++|+...+.-+                   ++..|..+++|++||++|+|+|+|-
T Consensus        39 ~~~gLa~~p~Sg-l~aY-pAGCvVVlfn~~~~tQ~h-------------------lvnssRk~~t~vAfS~~GryvatGE   97 (1080)
T KOG1408|consen   39 NANGLASVPCSG-LCAY-PAGCVVVLFNVDSCTQSH-------------------LVNSSRKPLTCVAFSQNGRYVATGE   97 (1080)
T ss_pred             cCCccccccccc-ceee-ccCcEEEEEcccccchhh-------------------eecccCcceeEEEEcCCCcEEEecc
Confidence            345666777665 3443 223578899987665443                   5678888999999999999999974


Q ss_pred             --CCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEec--CCCcEEEEeCCCCceeEEEeccCCCeEEE
Q 001295          432 --SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG--DDKTIKVWDATNGAKQYIFEGHEAPVYSV  507 (1106)
Q Consensus       432 --~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  507 (1106)
                        ....++||++.....+.   +|..|.-.|+|++|+|.++  ++++.|  .|-.|.+||++.......-+ -...|..+
T Consensus        98 cG~~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asnk-iss~Vsav  171 (1080)
T KOG1408|consen   98 CGRTPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASNK-ISSVVSAV  171 (1080)
T ss_pred             cCCCccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhcccccccc-cceeEEEE
Confidence              66789999999876555   6889999999999999999  777766  46678899987654433322 34678888


Q ss_pred             eccccCCceEEEEEecCCeEEEEeCCCCCceeE---eeCC-----------------CC---eeEEEEEecCCCeEE---
Q 001295          508 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD---YEAP-----------------GR---WCTTMAYSADGTRTY---  561 (1106)
Q Consensus       508 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~~~-----------------~~---~v~~~~~s~~~~~~~---  561 (1106)
                      +|  +.+|.++++.+ ...|++|.++...+...   +.+.                 +.   .-...+++..|...-   
T Consensus       172 ~f--sEdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSs  248 (1080)
T KOG1408|consen  172 AF--SEDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSS  248 (1080)
T ss_pred             EE--ccCCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeech
Confidence            87  46668898887 67899999876552210   0000                 00   002233344333111   


Q ss_pred             -------EeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEcc----------------------CCCCCC
Q 001295          562 -------QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA----------------------DGGLPA  612 (1106)
Q Consensus       562 -------~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----------------------~~~~~~  612 (1106)
                             ...+.....|++++  ..++++|+.+|.|++|+..+-....++..                      ....+.
T Consensus       249 RRLLDKWVqcRTTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD  326 (1080)
T KOG1408|consen  249 RRLLDKWVQCRTTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPD  326 (1080)
T ss_pred             hhhhhhhhhhhccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCc
Confidence                   11122233444444  45899999999999999876544433321                      111234


Q ss_pred             cCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhh--cccccccccCCCCCCCCcCchhhhHhhhhcccccccccccc
Q 001295          613 SPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF--ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASM  690 (1106)
Q Consensus       613 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  690 (1106)
                      ...+.|++....|.+..+|..++|||+++-.+.-+..  -.|+.-+                             .....
T Consensus       327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ci-----------------------------W~Ve~  377 (1080)
T KOG1408|consen  327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACI-----------------------------WDVEN  377 (1080)
T ss_pred             eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeecccee-----------------------------eeecc
Confidence            4578899999999999999999999998764332211  1122111                             11111


Q ss_pred             cccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEE-
Q 001295          691 VSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL-  769 (1106)
Q Consensus       691 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i-  769 (1106)
                      .+.........+.|.+ -++++++|++|++|++.........+.-              .++.+-..++.  .|++..+ 
T Consensus       378 ~p~nv~~~~~aclp~~-cF~TCSsD~TIRlW~l~~ctnn~vyrRN--------------ils~~l~ki~y--~d~~~q~~  440 (1080)
T KOG1408|consen  378 LPCNVHSPTAACLPRG-CFTTCSSDGTIRLWDLAFCTNNQVYRRN--------------ILSANLSKIPY--EDSTQQIM  440 (1080)
T ss_pred             ccccccCcccccCCcc-ceeEecCCCcEEEeecccccccceeecc--------------cchhhhhcCcc--ccCchhhh
Confidence            1112223333444433 3899999999999999863332222110              11111111111  1111100 


Q ss_pred             eeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeec
Q 001295          770 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM  848 (1106)
Q Consensus       770 w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~  848 (1106)
                      .|..               .-++|-....     .  ......+.++++||+|++||+|. .|+|+||++.+.+....+.
T Consensus       441 ~d~~---------------~~~fdka~~s-----~--~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~e  498 (1080)
T KOG1408|consen  441 HDAS---------------AGIFDKALVS-----T--CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFME  498 (1080)
T ss_pred             hhcc---------------CCcccccchh-----h--cCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhhee
Confidence            0000               0011111000     1  12567799999999999999998 7999999999998888999


Q ss_pred             CCCCCeeEEEEecC--CCceEEEeeCCCcEEEEEeec-ceEEEEecCcccCeeEEEEecCC--CEEEEEcCCCcEEEEeC
Q 001295          849 PPPPAATFLAFHPQ--DNNIIAIGMDDSSIQIYNVRV-DEVKSKLKGHSKRITGLAFSHAL--NVLVSSGADSQLCVWSS  923 (1106)
Q Consensus       849 ~~~~~v~~l~~s~~--d~~~la~g~~dg~v~iwd~~~-~~~~~~l~~h~~~V~~l~~s~d~--~~l~s~s~Dg~i~vwd~  923 (1106)
                      .|..+|.|+.||-.  ..++||+++.|..|+|||+.. ..+++++.+|+..|+++.|.-.|  ..++++|.|..|.+- .
T Consensus       499 AHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr-~  577 (1080)
T KOG1408|consen  499 AHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFR-V  577 (1080)
T ss_pred             cccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhhee-h
Confidence            99999999999952  357999999999999999864 56789999999999999998877  789999999977543 3


Q ss_pred             CCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEecCCceEeeecccC-CCCCCeeEEEECCCCCE
Q 001295          924 DGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPR-ESSAPITHATFSCDSQL 1001 (1106)
Q Consensus       924 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d~~~~~~~~~~~~~-~h~~~v~~l~~s~d~~~ 1001 (1106)
                      ..  +.....+.....+......+..++..|..+++++ +.|+.|+|||+.+++.++.|... +|.+....+...|.|-|
T Consensus       578 ~q--k~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY  655 (1080)
T KOG1408|consen  578 NQ--KASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIY  655 (1080)
T ss_pred             hc--cccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccE
Confidence            22  1111112222223333457889999999999999 79999999999999999998852 45678889999999999


Q ss_pred             EEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCC-----Ccc
Q 001295         1002 VYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE-----GKW 1076 (1106)
Q Consensus      1002 l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~-----~~~ 1076 (1106)
                      ||+.+.|+++.++|+.+|+++.++.       || +..|.  .+.|.+ |.+.|++.+.||+|+||.++...     ...
T Consensus       656 ~atScsdktl~~~Df~sgEcvA~m~-------GH-sE~VT--G~kF~n-DCkHlISvsgDgCIFvW~lp~~mii~m~~r~  724 (1080)
T KOG1408|consen  656 LATSCSDKTLCFVDFVSGECVAQMT-------GH-SEAVT--GVKFLN-DCKHLISVSGDGCIFVWKLPLTMIIRMVNRN  724 (1080)
T ss_pred             EEEeecCCceEEEEeccchhhhhhc-------Cc-chhee--eeeecc-cchhheeecCCceEEEEECchhHhHHHHHHh
Confidence            9999999999999999999999887       54 33355  899999 78999999999999999997643     222


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001295         1077 GVPPPVDNGSTSSMPATPPVGGSGSD 1102 (1106)
Q Consensus      1077 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 1102 (1106)
                      ...+..-.+..-..|.+|.+++.+++
T Consensus       725 ~~lr~rq~~~~~~~pl~p~~p~d~~~  750 (1080)
T KOG1408|consen  725 GRLRVRQLEKFIAVPLEPDNPNDASC  750 (1080)
T ss_pred             hHHHHHhccCCcCCCCCCCCCCCCcc
Confidence            22333444555555666766666654

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=1.5e-41  Score=358.34  Aligned_cols=557  Identities=13%  Similarity=0.149  Sum_probs=376.9

Q ss_pred             eeecc-CCCCcEEEEEecCCCeEEEEEe--ccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEE
Q 001295          344 TRTLN-QGSSPMSMDFHPVQQTLLLVGT--NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW  420 (1106)
Q Consensus       344 ~~~~~-h~~~v~~~~~sp~g~~llatg~--~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~  420 (1106)
                      .+++. |..+++|+|||++|+| +|+|-  ....++||++.....+..                   +..|+..|+|++|
T Consensus        71 ~hlvnssRk~~t~vAfS~~Gry-vatGEcG~~pa~kVw~la~h~vVAE-------------------fvdHKY~vtcvaF  130 (1080)
T KOG1408|consen   71 SHLVNSSRKPLTCVAFSQNGRY-VATGECGRTPASKVWSLAFHGVVAE-------------------FVDHKYNVTCVAF  130 (1080)
T ss_pred             hheecccCcceeEEEEcCCCcE-EEecccCCCccceeeeeccccchhh-------------------hhhccccceeeee
Confidence            34444 8889999999999997 99987  446799999998776653                   7899999999999


Q ss_pred             ccCCCEEEEEe--CCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEE--
Q 001295          421 SPDGSLFGVAY--SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--  496 (1106)
Q Consensus       421 spdg~~las~~--~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~--  496 (1106)
                      +|.++|+++.+  .|..|.+||++......    -..-...|..++|+.||.  |++|.+ ...|++|.++.++....  
T Consensus       131 sp~~kyvvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~g-nrHvk~wyl~~~~Kykdpi  203 (1080)
T KOG1408|consen  131 SPGNKYVVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSG-NRHVKLWYLQIQSKYKDPI  203 (1080)
T ss_pred             cCCCcEEEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeee-eeeEEEEEeeccccccCCc
Confidence            99999999876  45678899887543332    122356899999999999  788887 47899999876541110  


Q ss_pred             -----------E------------------------ecc-----------------CCCeEEEeccccCCceEEEEEecC
Q 001295          497 -----------F------------------------EGH-----------------EAPVYSVCPHHKENIQFIFSTALD  524 (1106)
Q Consensus       497 -----------~------------------------~~h-----------------~~~v~~~~~~~~~~~~~l~s~~~d  524 (1106)
                                 +                        .||                 +....|++++    .++|++|+.+
T Consensus       204 Pl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs----~r~I~cgCa~  279 (1080)
T KOG1408|consen  204 PLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVS----SRLIACGCAK  279 (1080)
T ss_pred             cccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeee----cceEEEeecc
Confidence                       0                        011                 0112344432    2689999999


Q ss_pred             CeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeecc---ceeEEEEcCCCCEEEEEECCCeEEEEECCCccee
Q 001295          525 GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR---SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL  601 (1106)
Q Consensus       525 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  601 (1106)
                      |.|++|+..+.....++.....--..++--.+-..++.+....   ....+.|++....+.+...|..+++||++.-..+
T Consensus       280 g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kv  359 (1080)
T KOG1408|consen  280 GMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKV  359 (1080)
T ss_pred             ceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccc
Confidence            9999998877555444332211000000000011111111111   2334678888899999999999999999874332


Q ss_pred             EEE-ccCCCCCCcCeEEEccC-----------CCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCc
Q 001295          602 TSI-DADGGLPASPRIRFNKD-----------GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISP  669 (1106)
Q Consensus       602 ~~~-~~~~~~~~v~~v~~s~~-----------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  669 (1106)
                      ... ..-.|...|+.+.--|-           ...+++++.|++||+|++..+.. -..+......              
T Consensus       360 gk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctn-n~vyrRNils--------------  424 (1080)
T KOG1408|consen  360 GKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTN-NQVYRRNILS--------------  424 (1080)
T ss_pred             cceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccc-cceeecccch--------------
Confidence            211 11112223444433330           23588999999999999875310 0000000000              


Q ss_pred             hhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEE
Q 001295          670 ISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRL  749 (1106)
Q Consensus       670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~  749 (1106)
                                                          .+.+-.-..|++..+..........+   ...........+.++
T Consensus       425 ------------------------------------~~l~ki~y~d~~~q~~~d~~~~~fdk---a~~s~~d~r~G~R~~  465 (1080)
T KOG1408|consen  425 ------------------------------------ANLSKIPYEDSTQQIMHDASAGIFDK---ALVSTCDSRFGFRAL  465 (1080)
T ss_pred             ------------------------------------hhhhcCccccCchhhhhhccCCcccc---cchhhcCcccceEEE
Confidence                                                00000000001100000000000000   000001245678999


Q ss_pred             EEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEec---CCCEEE
Q 001295          750 IFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK---NDSYVM  826 (1106)
Q Consensus       750 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~---~~~~l~  826 (1106)
                      +++|+|++|++|..-|.++||+++.-..                     ..  .+  ..|...|.|+.||.   ..++||
T Consensus       466 ~vSp~gqhLAsGDr~GnlrVy~Lq~l~~---------------------~~--~~--eAHesEilcLeyS~p~~~~kLLA  520 (1080)
T KOG1408|consen  466 AVSPDGQHLASGDRGGNLRVYDLQELEY---------------------TC--FM--EAHESEILCLEYSFPVLTNKLLA  520 (1080)
T ss_pred             EECCCcceecccCccCceEEEEehhhhh---------------------hh--he--ecccceeEEEeecCchhhhHhhh
Confidence            9999999999999999999999873211                     00  11  23999999999985   357899


Q ss_pred             EEe-CCeEEEEEcC-CCceeeeecCCCCCeeEEEEecCCC--ceEEEeeCCCcEEEEEeecceEEEEecCc-----ccCe
Q 001295          827 SAS-GGKISLFNMM-TFKTMATFMPPPPAATFLAFHPQDN--NIIAIGMDDSSIQIYNVRVDEVKSKLKGH-----SKRI  897 (1106)
Q Consensus       827 ~~s-dg~i~vwd~~-~~~~~~~~~~~~~~v~~l~~s~~d~--~~la~g~~dg~v~iwd~~~~~~~~~l~~h-----~~~V  897 (1106)
                      +++ |.-|+|||+. +..+++++.+|...|+++.|.. .+  ..+++++.|..|.+--.+...-...+..|     ...+
T Consensus       521 SasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~-~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTl  599 (1080)
T KOG1408|consen  521 SASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFAC-NGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTL  599 (1080)
T ss_pred             hccCCceEEEEecccccchhhhhcccccceeEEEEee-cCCceEEEeccCchhhheehhccccCceeccccccccccceE
Confidence            999 8899999997 5667788999999999999987 44  56778888988765433321111122111     2458


Q ss_pred             eEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEecCCce
Q 001295          898 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLE  976 (1106)
Q Consensus       898 ~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d~~~~~  976 (1106)
                      +.++..|..+++++++.|+.|+||+++++++     .+.+++.....+....+...|.|.|+|+ +.|+++.++|.-+++
T Consensus       600 YDm~Vdp~~k~v~t~cQDrnirif~i~sgKq-----~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgE  674 (1080)
T KOG1408|consen  600 YDMAVDPTSKLVVTVCQDRNIRIFDIESGKQ-----VKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGE  674 (1080)
T ss_pred             EEeeeCCCcceEEEEecccceEEEeccccce-----eeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccch
Confidence            8999999999999999999999999999875     3344444444467889999999999999 699999999999999


Q ss_pred             EeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCC
Q 001295          977 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1018 (1106)
Q Consensus       977 ~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~ 1018 (1106)
                      |+....  +|+..|+.+.|++|-+.|++.+.||.|.||.+..
T Consensus       675 cvA~m~--GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  675 CVAQMT--GHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             hhhhhc--CcchheeeeeecccchhheeecCCceEEEEECch
Confidence            999987  9999999999999999999999999999999864

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=5.6e-41  Score=339.46  Aligned_cols=352  Identities=19%  Similarity=0.347  Sum_probs=281.7

Q ss_pred             CCCcceeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccc-c----CCCC
Q 001295          338 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAAL-V----KDPG  412 (1106)
Q Consensus       338 ~~~~~~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~----~~h~  412 (1106)
                      .+|......++|+.+|.+++|+|-..-++|+|+.|-+.++|++.........          ...+...+ .    ....
T Consensus       166 ~I~~~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~----------q~~lrh~~~~~~~s~~~n  235 (524)
T KOG0273|consen  166 EIPSSKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGST----------QLVLRHCIREGGKSVPSN  235 (524)
T ss_pred             cccccceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccch----------hhhhhhhhhhhcccCCcc
Confidence            4577777888899999999999977767999999999999998741111000          00000000 1    1123


Q ss_pred             cCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCc
Q 001295          413 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA  492 (1106)
Q Consensus       413 ~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~  492 (1106)
                      ..|++++|+.+|..||+|+.||.++||+...+. +.   +|..|.++|.++.|+.+|.  +|++++.|+++.+||..+|.
T Consensus       236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l-~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~  309 (524)
T KOG0273|consen  236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL-IS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGT  309 (524)
T ss_pred             CCcceEEecCCCCeEEEeecCcEEEEEecCchh-hh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCce
Confidence            579999999999999999999999999988643 22   6888999999999999999  89999999999999999999


Q ss_pred             eeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEE
Q 001295          493 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV  572 (1106)
Q Consensus       493 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~  572 (1106)
                      ..+.+.-|..+-..+.|-..   ..                                                       
T Consensus       310 ~~q~f~~~s~~~lDVdW~~~---~~-------------------------------------------------------  331 (524)
T KOG0273|consen  310 VKQQFEFHSAPALDVDWQSN---DE-------------------------------------------------------  331 (524)
T ss_pred             EEEeeeeccCCccceEEecC---ce-------------------------------------------------------
Confidence            99988888777555554211   12                                                       


Q ss_pred             EEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhccc
Q 001295          573 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL  652 (1106)
Q Consensus       573 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  652 (1106)
                              +++.+.|+.|+++.+...+++.++.+|  ...|.++.|.|.|.+|+++++|++++||+.... .....+.  
T Consensus       332 --------F~ts~td~~i~V~kv~~~~P~~t~~GH--~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~-~~~~~l~--  398 (524)
T KOG0273|consen  332 --------FATSSTDGCIHVCKVGEDRPVKTFIGH--HGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS-NSVHDLQ--  398 (524)
T ss_pred             --------EeecCCCceEEEEEecCCCcceeeecc--cCceEEEEECCCCceEEEecCCCeeEeeecCCC-cchhhhh--
Confidence                    566666667777777777788888875  558999999999999999999999999987655 3333222  


Q ss_pred             ccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccc
Q 001295          653 AYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQC  732 (1106)
Q Consensus       653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~  732 (1106)
                                                                                                      
T Consensus       399 --------------------------------------------------------------------------------  398 (524)
T KOG0273|consen  399 --------------------------------------------------------------------------------  398 (524)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCC
Q 001295          733 RSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEA  812 (1106)
Q Consensus       733 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  812 (1106)
                              +|...|..+.++|.|...                                 |++                  
T Consensus       399 --------~Hskei~t~~wsp~g~v~---------------------------------~n~------------------  419 (524)
T KOG0273|consen  399 --------AHSKEIYTIKWSPTGPVT---------------------------------SNP------------------  419 (524)
T ss_pred             --------hhccceeeEeecCCCCcc---------------------------------CCC------------------
Confidence                    367778888888887510                                 000                  


Q ss_pred             eeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEec
Q 001295          813 VPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK  891 (1106)
Q Consensus       813 v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~  891 (1106)
                             ..+..+++++ |++|++||+..+.++.+|..|..+|.+++||| +++++|+|+.||.|.||+.+++++++...
T Consensus       420 -------~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~-~g~ylAsGs~dg~V~iws~~~~~l~~s~~  491 (524)
T KOG0273|consen  420 -------NMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP-NGRYLASGSLDGCVHIWSTKTGKLVKSYQ  491 (524)
T ss_pred             -------cCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC-CCcEEEecCCCCeeEeccccchheeEeec
Confidence                   1344566666 99999999999999999999999999999999 99999999999999999999999999987


Q ss_pred             CcccCeeEEEEecCCCEEEEEcCCCcEEEEeCC
Q 001295          892 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSD  924 (1106)
Q Consensus       892 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~  924 (1106)
                      + .+.|..|+|+.+|..|..+-.|+.+.+-|+.
T Consensus       492 ~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  492 G-TGGIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             C-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            5 4559999999999999999999999998874

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=100.00  E-value=6e-38  Score=339.01  Aligned_cols=588  Identities=15%  Similarity=0.154  Sum_probs=432.9

Q ss_pred             EEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeCCCe
Q 001295          356 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI  435 (1106)
Q Consensus       356 ~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~  435 (1106)
                      ..|..-|+.++++.+.+.+..+||.+.-..+..                   -..+...|.|++=..+  +..+++ ...
T Consensus        39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~v-------------------s~~lp~~I~alas~~~--~vy~A~-g~~   96 (910)
T KOG1539|consen   39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFV-------------------SKPLPDKITALASDKD--YVYVAS-GNK   96 (910)
T ss_pred             eeeeecCceEEEEEecCceEEEEeccceEEEEe-------------------cCCCCCceEEEEecCc--eEEEec-CcE
Confidence            666677777889999999999999987666542                   2466778999886544  444443 244


Q ss_pred             EEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCC-ce----eEEEeccCCCeEEEecc
Q 001295          436 VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AK----QYIFEGHEAPVYSVCPH  510 (1106)
Q Consensus       436 v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~----~~~~~~h~~~v~~~~~~  510 (1106)
                      |.+|..  |+.++.  .+.+|.+.|.-+.-  -|.  .++++..++.+.||+..++ ..    +..++...+.|+++. |
T Consensus        97 i~~~~r--gk~i~~--~~~~~~a~v~~l~~--fGe--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-H  167 (910)
T KOG1539|consen   97 IYAYAR--GKHIRH--TTLLHGAKVHLLLP--FGE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-H  167 (910)
T ss_pred             EEEEEc--cceEEE--EeccccceEEEEee--ecc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-c
Confidence            666653  443332  46678777877663  466  6899999999999998874 22    122233334488876 4


Q ss_pred             ccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeE
Q 001295          511 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSI  590 (1106)
Q Consensus       511 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i  590 (1106)
                      |+.--+.++.|+.+|.+.+|++++++.+.++......|+++.-+|-=.                     .++.|..+|+|
T Consensus       168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLD---------------------VVaiG~~~G~V  226 (910)
T KOG1539|consen  168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALD---------------------VVAIGLENGTV  226 (910)
T ss_pred             chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcce---------------------EEEEeccCceE
Confidence            555556799999999999999999999999998888777776655433                     58889999999


Q ss_pred             EEEECCCcceeEEEccCCCCCCcCeEEEccCCCE-EEEEeCCCcEEEEEccCCchhhhhhc-ccccccccCCCCCCCCcC
Q 001295          591 KFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCL-LAVSTNDNGIKILATSDGIRLLRTFE-NLAYDASRTSENSKPTIS  668 (1106)
Q Consensus       591 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  668 (1106)
                      .++|++.++.+.+++..  .+.|++++|.-||.. +++|+..|.+.+||++.. +.....+ .|...+            
T Consensus       227 iifNlK~dkil~sFk~d--~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~k-kl~~v~~nah~~sv------------  291 (910)
T KOG1539|consen  227 IIFNLKFDKILMSFKQD--WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKK-KLINVTRNAHYGSV------------  291 (910)
T ss_pred             EEEEcccCcEEEEEEcc--ccceeEEEeccCCCeeEEeccCCceEEEEEcCCC-eeeeeeeccccCCc------------
Confidence            99999999999999866  347999999999875 556666799999999876 3333333 332211            


Q ss_pred             chhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEE
Q 001295          669 PISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISR  748 (1106)
Q Consensus       669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~  748 (1106)
                                                   ....+.+....+++++.|+.+++|-.+.+....+  .++.. .+|..+..+
T Consensus       292 -----------------------------~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR--~LR~R-~GHs~Pp~~  339 (910)
T KOG1539|consen  292 -----------------------------TGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPR--LLRSR-GGHSAPPSC  339 (910)
T ss_pred             -----------------------------ccceecCCCceEeeccCCCceeEEEeeCCCCcch--heeec-cCCCCCchh
Confidence                                         1223455677889999999999998885444322  22222 579999999


Q ss_pred             EEEc-CCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCC----C
Q 001295          749 LIFT-NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND----S  823 (1106)
Q Consensus       749 ~~~s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~----~  823 (1106)
                      +.|- .+|..+++++.|++++.+++....++..-..       +.....+..+.........-.+|..+++....    .
T Consensus       340 irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~-------~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~  412 (910)
T KOG1539|consen  340 IRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQ-------LHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWD  412 (910)
T ss_pred             eeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcc-------cccccccccccccchhhhcCCcceeeecccchhhhhc
Confidence            9997 7899999999999999888765443222111       11111111111000000023456666665321    1


Q ss_pred             EEEEEe--CCeEEEEEcCCCce-eeeec-----CCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEe---cC
Q 001295          824 YVMSAS--GGKISLFNMMTFKT-MATFM-----PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL---KG  892 (1106)
Q Consensus       824 ~l~~~s--dg~i~vwd~~~~~~-~~~~~-----~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l---~~  892 (1106)
                      -++++.  +...+.|++.+... ...+.     .....+++++.++ .|++.+.|+..|.|-+|++++|-....+   ..
T Consensus       413 Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~a  491 (910)
T KOG1539|consen  413 NVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPA  491 (910)
T ss_pred             ceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccCeeecccccCcc
Confidence            234444  57799999987554 23332     2346799999999 9999999999999999999999998888   58


Q ss_pred             cccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEe
Q 001295          893 HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFE  971 (1106)
Q Consensus       893 h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d  971 (1106)
                      |..+|++|+...-++.++|++.||-+++||+.+...     +....    ....+.++.++-....+++ ..|-.|+++|
T Consensus       492 h~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l-----~~~l~----l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD  562 (910)
T KOG1539|consen  492 HKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVL-----KKSLR----LGSSITGIVYHRVSDLLAIALDDFSIRVVD  562 (910)
T ss_pred             ccCceeEEEecCCCceEEEccCcceEEEEecCCcce-----eeeec----cCCCcceeeeeehhhhhhhhcCceeEEEEE
Confidence            999999999988889999999999999999988442     11111    1136788888888888888 6888999999


Q ss_pred             cCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCC
Q 001295          972 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1051 (1106)
Q Consensus       972 ~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d 1051 (1106)
                      ..+.+.++.+.  +|+..|++++|||||++|++++.|++|++||+.++.++..+.    ..       .-++.+.|+| .
T Consensus       563 ~~t~kvvR~f~--gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~----vd-------~~~~sls~SP-n  628 (910)
T KOG1539|consen  563 VVTRKVVREFW--GHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL----VD-------SPCTSLSFSP-N  628 (910)
T ss_pred             chhhhhhHHhh--ccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe----cC-------CcceeeEECC-C
Confidence            99999999998  999999999999999999999999999999999999998776    11       1234799999 6


Q ss_pred             CCEEEEEeCC-CcEEEEeecCCC
Q 001295         1052 PNEFALGLSD-GGVHVFEPLESE 1073 (1106)
Q Consensus      1052 ~~~l~t~~~D-g~v~vW~~~~~~ 1073 (1106)
                      |++|+|...| .-|++|--..--
T Consensus       629 gD~LAT~Hvd~~gIylWsNkslF  651 (910)
T KOG1539|consen  629 GDFLATVHVDQNGIYLWSNKSLF  651 (910)
T ss_pred             CCEEEEEEecCceEEEEEchhHh
Confidence            9999999999 679999865444

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.4e-41  Score=339.48  Aligned_cols=285  Identities=18%  Similarity=0.260  Sum_probs=260.1

Q ss_pred             cccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCC
Q 001295          455 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN  534 (1106)
Q Consensus       455 ~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  534 (1106)
                      |-+.+|..+.|+.|++  .|+||+.+|.++||+..+...+++|.||...|.++.|+|..++..++||+.||++++|++.+
T Consensus       173 gd~rPis~~~fS~ds~--~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~  250 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSK--HLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ  250 (459)
T ss_pred             cCCCcceeeEeecCCC--eEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence            4567899999999999  89999999999999999999999999999999999999986557899999999999999999


Q ss_pred             CCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcC
Q 001295          535 LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASP  614 (1106)
Q Consensus       535 ~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~  614 (1106)
                      ...+..+.+|...|..++|+|+|+                     +|++++.|.+-++||+.++..+....+|  ...|.
T Consensus       251 e~~l~~l~gH~~RVs~VafHPsG~---------------------~L~TasfD~tWRlWD~~tk~ElL~QEGH--s~~v~  307 (459)
T KOG0272|consen  251 ETPLQDLEGHLARVSRVAFHPSGK---------------------FLGTASFDSTWRLWDLETKSELLLQEGH--SKGVF  307 (459)
T ss_pred             CcchhhhhcchhhheeeeecCCCc---------------------eeeecccccchhhcccccchhhHhhccc--ccccc
Confidence            888889998888777777666665                     8999999999999999999988777766  55899


Q ss_pred             eEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccC
Q 001295          615 RIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIP  694 (1106)
Q Consensus       615 ~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  694 (1106)
                      +++|.+||.++++|+.|..-+|||++++. ++-.                                              
T Consensus       308 ~iaf~~DGSL~~tGGlD~~~RvWDlRtgr-~im~----------------------------------------------  340 (459)
T KOG0272|consen  308 SIAFQPDGSLAATGGLDSLGRVWDLRTGR-CIMF----------------------------------------------  340 (459)
T ss_pred             eeEecCCCceeeccCccchhheeecccCc-EEEE----------------------------------------------
Confidence            99999999999999999999999998881 1110                                              


Q ss_pred             CCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccc
Q 001295          695 GMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQR  774 (1106)
Q Consensus       695 ~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~  774 (1106)
                                                                                                      
T Consensus       341 --------------------------------------------------------------------------------  340 (459)
T KOG0272|consen  341 --------------------------------------------------------------------------------  340 (459)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCC
Q 001295          775 TERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPA  853 (1106)
Q Consensus       775 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~  853 (1106)
                                                   +.  +|...|.+++|+|+|..||+|+ |++++|||++..+.+.++.+|.+-
T Consensus       341 -----------------------------L~--gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nl  389 (459)
T KOG0272|consen  341 -----------------------------LA--GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNL  389 (459)
T ss_pred             -----------------------------ec--ccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccch
Confidence                                         11  2788889999999999999998 999999999998999999999999


Q ss_pred             eeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEe
Q 001295          854 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS  922 (1106)
Q Consensus       854 v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd  922 (1106)
                      |+.+.|+|+.|.+|++++.|++++||...++.+++.+.||.+.|.++++++|+.+++|++.|+++++|.
T Consensus       390 VS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  390 VSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             hhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            999999998899999999999999999999999999999999999999999999999999999999995

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=7e-41  Score=362.22  Aligned_cols=276  Identities=18%  Similarity=0.275  Sum_probs=238.3

Q ss_pred             CCCCCcceeeecc-CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEE---eeeeee---------ccCcCCcc
Q 001295          336 PEDLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL---RNFKVW---------DLGACSMP  402 (1106)
Q Consensus       336 ~~~~~~~~~~~~~-h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~---~~~~~~---------d~~~~~~~  402 (1106)
                      .+.+|.-+.+++. ....++|..||+|++ ++|.|-.|..|++|.+...+....   ..+..-         |+......
T Consensus       363 ~~~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~  441 (707)
T KOG0263|consen  363 RNSLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSS  441 (707)
T ss_pred             CCCCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCC
Confidence            3566888888887 567899999999999 699999999999999985432110   000000         11111222


Q ss_pred             ccccccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCc
Q 001295          403 LQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT  482 (1106)
Q Consensus       403 ~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~  482 (1106)
                      .....+.||+++|..+.|+|+.++|++++.|++|++|.+.+..++-   .+.||..+|+++.|+|.|-  +|||+|.|++
T Consensus       442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~t  516 (707)
T KOG0263|consen  442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQT  516 (707)
T ss_pred             ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCce
Confidence            3334589999999999999999999999999999999999987655   6789999999999999998  8999999999


Q ss_pred             EEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEE
Q 001295          483 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ  562 (1106)
Q Consensus       483 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~  562 (1106)
                      .++|.....++++.+.||.+.|.|+.|+|+.  +++++||.|.+||+||+.++..++.+.+|..+|.+++|+|+|+    
T Consensus       517 ArLWs~d~~~PlRifaghlsDV~cv~FHPNs--~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr----  590 (707)
T KOG0263|consen  517 ARLWSTDHNKPLRIFAGHLSDVDCVSFHPNS--NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGR----  590 (707)
T ss_pred             eeeeecccCCchhhhcccccccceEEECCcc--cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCc----
Confidence            9999999999999999999999999998766  7999999999999999999999999998888888888888776    


Q ss_pred             eeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295          563 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       563 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                                       +|++|++||.|.+||+.+++.+..+.+|  .+.|.++.|+.||..||+|+.|++|++||+...
T Consensus       591 -----------------~LaSg~ed~~I~iWDl~~~~~v~~l~~H--t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  591 -----------------YLASGDEDGLIKIWDLANGSLVKQLKGH--TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             -----------------eEeecccCCcEEEEEcCCCcchhhhhcc--cCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence                             8999999999999999999999999888  568999999999999999999999999998654

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1e-40  Score=333.34  Aligned_cols=284  Identities=19%  Similarity=0.300  Sum_probs=258.8

Q ss_pred             ccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccC--C
Q 001295          347 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD--G  424 (1106)
Q Consensus       347 ~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd--g  424 (1106)
                      ++.+.+|..+.||+|++ +||||+-+|.++||+..+...+.                   +|.||...|.++.|+|.  +
T Consensus       172 ~gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~-------------------~l~gH~~~v~~~~fhP~~~~  231 (459)
T KOG0272|consen  172 VGDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQ-------------------TLRGHTSRVGAAVFHPVDSD  231 (459)
T ss_pred             ccCCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeE-------------------EEeccccceeeEEEccCCCc
Confidence            35678999999999999 59999999999999999987665                   48999999999999995  6


Q ss_pred             CEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCe
Q 001295          425 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV  504 (1106)
Q Consensus       425 ~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v  504 (1106)
                      ..||+|+.||+|++|++.+...+.   .+.+|...|..++|+|+|+  +|+|++.|.+-++||++++..+....||...|
T Consensus       232 ~~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v  306 (459)
T KOG0272|consen  232 LNLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGV  306 (459)
T ss_pred             cceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhccccccc
Confidence            799999999999999999876655   6899999999999999999  89999999999999999999999999999999


Q ss_pred             EEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEE
Q 001295          505 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  584 (1106)
Q Consensus       505 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  584 (1106)
                      .+++|++  ||.+++|||.|..-++||++++.++..+.+|.+.|.++.|+|+|-                     .+++|
T Consensus       307 ~~iaf~~--DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy---------------------~lATg  363 (459)
T KOG0272|consen  307 FSIAFQP--DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGY---------------------HLATG  363 (459)
T ss_pred             ceeEecC--CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCce---------------------EEeec
Confidence            9999865  558999999999999999999999999999999888888888775                     79999


Q ss_pred             ECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCC
Q 001295          585 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS  663 (1106)
Q Consensus       585 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  663 (1106)
                      +.|++++|||++..+.+.++..|  ...|+.|.|+| .|.+|++++.|++++||...+. .+++.+.             
T Consensus       364 s~Dnt~kVWDLR~r~~ly~ipAH--~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~-~~~ksLa-------------  427 (459)
T KOG0272|consen  364 SSDNTCKVWDLRMRSELYTIPAH--SNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW-SPLKSLA-------------  427 (459)
T ss_pred             CCCCcEEEeeecccccceecccc--cchhhheEecccCCeEEEEcccCcceeeecCCCc-ccchhhc-------------
Confidence            99999999999999999998877  45799999999 8999999999999999988776 5555543             


Q ss_pred             CCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccc
Q 001295          664 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRA  743 (1106)
Q Consensus       664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~  743 (1106)
                                                                                                   +|.
T Consensus       428 -----------------------------------------------------------------------------GHe  430 (459)
T KOG0272|consen  428 -----------------------------------------------------------------------------GHE  430 (459)
T ss_pred             -----------------------------------------------------------------------------CCc
Confidence                                                                                         488


Q ss_pred             cceEEEEEcCCCceEEEeecCceEEEee
Q 001295          744 TKISRLIFTNSGNAILALASNAIHLLWK  771 (1106)
Q Consensus       744 ~~i~~~~~s~~~~~l~~~~~dg~i~iw~  771 (1106)
                      +.|.++.+++|+..+++++.|.++++|.
T Consensus       431 ~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  431 GKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             cceEEEEeccCCceEEEeccCceeeecc
Confidence            8999999999999999999999999994

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=3.9e-37  Score=325.96  Aligned_cols=597  Identities=15%  Similarity=0.172  Sum_probs=404.3

Q ss_pred             CCCCCCCCcceeeecc-CCCCcEEEEEecCCC---eEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCcccccccc
Q 001295          333 FSTPEDLPKTVTRTLN-QGSSPMSMDFHPVQQ---TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALV  408 (1106)
Q Consensus       333 ~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~g~---~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  408 (1106)
                      +...+.....+..++. |..+|+|+.|-|+.+   + +++|+.||.|++|.+.........                 .+
T Consensus        36 Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~-~vsG~sD~~v~lW~l~~~~~~~i~-----------------~~   97 (764)
T KOG1063|consen   36 IAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAE-MVSGDSDGRVILWKLRDEYLIKIY-----------------TI   97 (764)
T ss_pred             EEEeCcccceeEEeccCCccceEEEEEcccccccce-EEEccCCCcEEEEEEeehheEEEE-----------------ee
Confidence            3333444444555555 999999999999887   5 889999999999999843333221                 25


Q ss_pred             CCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeee--eccccCCeeEEEEcCCCCceEEEEecCCCcEEEE
Q 001295          409 KDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLE--IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  486 (1106)
Q Consensus       409 ~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~--l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw  486 (1106)
                      .+|...+.|  ++.......+...|+++.+||.+..+ +.....  +..-..--.|+++.++.+..+++.|+.+..|.++
T Consensus        98 ~g~~~~~~c--v~a~~~~~~~~~ad~~v~vw~~~~~e-~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~  174 (764)
T KOG1063|consen   98 QGHCKECVC--VVARSSVMTCKAADGTVSVWDKQQDE-VFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLY  174 (764)
T ss_pred             cCcceeEEE--EEeeeeEEEeeccCceEEEeecCCCc-eeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEe
Confidence            566555554  44333333333689999999996544 111111  2222223356777786665578888889999998


Q ss_pred             eCCCC--ceeEEEeccCCCeEEEeccccCC-ceEEEEEecCCeEEEEeCCCCCceeEe------e-CCCCeeEEEE----
Q 001295          487 DATNG--AKQYIFEGHEAPVYSVCPHHKEN-IQFIFSTALDGKIKAWLYDNLGSRVDY------E-APGRWCTTMA----  552 (1106)
Q Consensus       487 d~~~~--~~~~~~~~h~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~------~-~~~~~v~~~~----  552 (1106)
                      .-.++  +.+..+.||.+.|.+++|..... .-+|+++|.|..||+|.+.........      . ....++..+.    
T Consensus       175 s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~  254 (764)
T KOG1063|consen  175 SSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQ  254 (764)
T ss_pred             ccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEE
Confidence            75544  45678999999999999876544 568999999999999987543311100      0 0001111110    


Q ss_pred             EecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcc--eeEEE--cc-CCCCCCcCeEEEccCCCEEEE
Q 001295          553 YSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ--LLTSI--DA-DGGLPASPRIRFNKDGCLLAV  627 (1106)
Q Consensus       553 ~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~--~~-~~~~~~v~~v~~s~~~~~l~~  627 (1106)
                      +--.-..++.||.+ -+..+.|+|.+..|++++.|.++.+|...+..  -+...  .. .+.........|+|++..+++
T Consensus       255 ~~is~eall~GHeD-WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~  333 (764)
T KOG1063|consen  255 YRISFEALLMGHED-WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIA  333 (764)
T ss_pred             EEEehhhhhcCccc-ceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEE
Confidence            10001122334443 67778888888889999999999999876652  22222  11 122335778999999999999


Q ss_pred             EeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCC
Q 001295          628 STNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVK  707 (1106)
Q Consensus       628 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  707 (1106)
                      -+..|..++|...+..                                                                
T Consensus       334 ~g~~Gg~hlWkt~d~~----------------------------------------------------------------  349 (764)
T KOG1063|consen  334 HGRTGGFHLWKTKDKT----------------------------------------------------------------  349 (764)
T ss_pred             ecccCcEEEEeccCcc----------------------------------------------------------------
Confidence            9999999999732220                                                                


Q ss_pred             ccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCcccccc
Q 001295          708 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASV  787 (1106)
Q Consensus       708 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~  787 (1106)
                                  .|....            -..+|...|.+++|.|.|.++++++.|.+-+++-.-..+.          
T Consensus       350 ------------~w~~~~------------~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~----------  395 (764)
T KOG1063|consen  350 ------------FWTQEP------------VISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQ----------  395 (764)
T ss_pred             ------------ceeecc------------ccccccccceeeeecCCCCEEEEeccccceeeeccccccc----------
Confidence                        111110            0035889999999999999999999999999875321000          


Q ss_pred             CccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEeC-CeEEEEEcC---------------------------
Q 001295          788 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG-GKISLFNMM---------------------------  839 (1106)
Q Consensus       788 ~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sd-g~i~vwd~~---------------------------  839 (1106)
                         -|...     .   +.+-|...++|++|-+....+++|.| ..+|+|+..                           
T Consensus       396 ---~wHEi-----a---RPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~V  464 (764)
T KOG1063|consen  396 ---EWHEI-----A---RPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANV  464 (764)
T ss_pred             ---ceeee-----c---ccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccccccc
Confidence               02110     0   11228888899998876666677765 567888731                           


Q ss_pred             ----------------CCce---------------------------------eeeecCCCCCeeEEEEecCCCceEEEe
Q 001295          840 ----------------TFKT---------------------------------MATFMPPPPAATFLAFHPQDNNIIAIG  870 (1106)
Q Consensus       840 ----------------~~~~---------------------------------~~~~~~~~~~v~~l~~s~~d~~~la~g  870 (1106)
                                      +|..                                 ++.+-||..+|.+++.+| +++++|++
T Consensus       465 paLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASa  543 (764)
T KOG1063|consen  465 PALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIASA  543 (764)
T ss_pred             ccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC-CCCEEeeh
Confidence                            0000                                 011246778899999999 99999999


Q ss_pred             eCCC-----cEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCC
Q 001295          871 MDDS-----SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQ  945 (1106)
Q Consensus       871 ~~dg-----~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  945 (1106)
                      +...     .|++|+..+...+..+.+|+-.|+.|+|||||++|++++.|+++.+|+.......... ....+.|.   .
T Consensus       544 CKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~-fa~~k~Ht---R  619 (764)
T KOG1063|consen  544 CKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFR-FACLKAHT---R  619 (764)
T ss_pred             hhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhh-hccccccc---e
Confidence            8654     6899999999888999999999999999999999999999999999998654433222 12233443   3


Q ss_pred             CCceEEEcCCCcEEEE-EeCCeEEEEecCCc--eEeeecccCCCCCCeeEEEECC-----CCCEEEEEEcCCeEEEEEcC
Q 001295          946 SDTRVQFHQDQIHFLV-VHETQLAIFETTKL--ECVKQWVPRESSAPITHATFSC-----DSQLVYACFLDATVCVFSAA 1017 (1106)
Q Consensus       946 ~i~~~~~s~dg~~l~~-~~d~~v~i~d~~~~--~~~~~~~~~~h~~~v~~l~~s~-----d~~~l~t~s~Dg~i~vwd~~ 1017 (1106)
                      -|..+.|+|+++++++ +.|++|.+|.....  +.+..+....++.+|+.+++.|     .+..++.|-+.|.|.+|...
T Consensus       620 IIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~  699 (764)
T KOG1063|consen  620 IIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK  699 (764)
T ss_pred             EEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence            7889999999999999 68999999999888  6666655567899999999987     23378899999999999965


Q ss_pred             C-------ceeEEeeCCCcccCCCCCCCCccceEEEEeCCC---------CCEEEEEeCCCcEEEEeec
Q 001295         1018 N-------LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE---------PNEFALGLSDGGVHVFEPL 1070 (1106)
Q Consensus      1018 ~-------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d---------~~~l~t~~~Dg~v~vW~~~ 1070 (1106)
                      .       +............+  | ...|.  .+.|.|..         ...|++|++|.+++++++.
T Consensus       700 ~~~~~~~~~~~~~~~~l~~~~~--~-~~aV~--rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~  763 (764)
T KOG1063|consen  700 REHRQVTVGTFNLDTRLCATIG--P-DSAVN--RLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD  763 (764)
T ss_pred             cccccccceeeeeccccccccC--h-HHhhh--eeEeccccccccccccceeEEeeecccceeEEeecc
Confidence            1       11111111111111  2 22255  78888641         1237999999999999875

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.9e-38  Score=301.89  Aligned_cols=296  Identities=20%  Similarity=0.305  Sum_probs=259.9

Q ss_pred             Ccceeeecc-CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEE
Q 001295          340 PKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV  418 (1106)
Q Consensus       340 ~~~~~~~~~-h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l  418 (1106)
                      ..+..++|. |...|.++.|++|.++ +++++.||.+.|||.-+..+.+.                   +.-....|..+
T Consensus        44 ~~~~rr~LkGH~~Ki~~~~ws~Dsr~-ivSaSqDGklIvWDs~TtnK~ha-------------------ipl~s~WVMtC  103 (343)
T KOG0286|consen   44 QMRTRRTLKGHLNKIYAMDWSTDSRR-IVSASQDGKLIVWDSFTTNKVHA-------------------IPLPSSWVMTC  103 (343)
T ss_pred             eeeeEEEecccccceeeeEecCCcCe-EEeeccCCeEEEEEcccccceeE-------------------EecCceeEEEE
Confidence            334456666 9999999999999996 99999999999999988776653                   34456799999


Q ss_pred             EEccCCCEEEEEeCCCeEEEEEccCC--c-eeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeE
Q 001295          419 IWSPDGSLFGVAYSRHIVQIYSYHGG--D-EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY  495 (1106)
Q Consensus       419 ~~spdg~~las~~~d~~v~iwd~~~~--~-~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~  495 (1106)
                      +|+|.|+++|.|+-|+...||++.+.  + .++....+.+|.+.+.|+.|.+|+.   |+|++.|.+..+||+++|+.+.
T Consensus       104 A~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~  180 (343)
T KOG0286|consen  104 AYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQ  180 (343)
T ss_pred             EECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEE
Confidence            99999999999999999999999865  2 1233446889999999999998775   9999999999999999999999


Q ss_pred             EEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEc
Q 001295          496 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD  575 (1106)
Q Consensus       496 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~  575 (1106)
                      .|.||.+.|.++.+.|. +++.+++|+-|+..++||++.+...+.+.+|...|.++.|.|+|.                 
T Consensus       181 ~f~GH~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~-----------------  242 (343)
T KOG0286|consen  181 VFHGHTGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD-----------------  242 (343)
T ss_pred             EecCCcccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCC-----------------
Confidence            99999999999999875 668999999999999999999999999999999888888877775                 


Q ss_pred             CCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccc
Q 001295          576 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYD  655 (1106)
Q Consensus       576 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  655 (1106)
                          -+++|++|++.++||++..+.+..+........|++++||..|++|++|..|.++.+||.-.+ +....+      
T Consensus       243 ----afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~-e~vg~L------  311 (343)
T KOG0286|consen  243 ----AFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG-ERVGVL------  311 (343)
T ss_pred             ----eeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecccc-ceEEEe------
Confidence                699999999999999999999999987777788999999999999999999999999997655 111111      


Q ss_pred             cccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceec
Q 001295          656 ASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSL  735 (1106)
Q Consensus       656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~  735 (1106)
                                                                                                      
T Consensus       312 --------------------------------------------------------------------------------  311 (343)
T KOG0286|consen  312 --------------------------------------------------------------------------------  311 (343)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCccccccceEEEEEcCCCceEEEeecCceEEEee
Q 001295          736 RLPENLRATKISRLIFTNSGNAILALASNAIHLLWK  771 (1106)
Q Consensus       736 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~  771 (1106)
                          .+|.++|.++..+|||..+++++.|..++||.
T Consensus       312 ----~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  312 ----AGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             ----eccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence                24899999999999999999999999999993

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5e-37  Score=320.54  Aligned_cols=464  Identities=17%  Similarity=0.265  Sum_probs=352.8

Q ss_pred             CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEE
Q 001295          349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  428 (1106)
Q Consensus       349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  428 (1106)
                      |.+.|.++.|+|...+ +.++-..|.|.|||.++...+..  |                 .-..-+|.+..|-+..++++
T Consensus        12 rSdRVKsVd~HPtePw-~la~LynG~V~IWnyetqtmVks--f-----------------eV~~~PvRa~kfiaRknWiv   71 (794)
T KOG0276|consen   12 RSDRVKSVDFHPTEPW-ILAALYNGDVQIWNYETQTMVKS--F-----------------EVSEVPVRAAKFIARKNWIV   71 (794)
T ss_pred             cCCceeeeecCCCCce-EEEeeecCeeEEEecccceeeee--e-----------------eecccchhhheeeeccceEE
Confidence            8899999999999997 66678899999999999877754  2                 22345899999999999999


Q ss_pred             EEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCC-ceeEEEeccCCCeEEE
Q 001295          429 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPVYSV  507 (1106)
Q Consensus       429 s~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~  507 (1106)
                      +|+.|..|+||+..+++.++   .|.+|.+.|.+++.+|...  +++|+|+|-+|++||.+.+ .+.++|.||...|.++
T Consensus        72 ~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv  146 (794)
T KOG0276|consen   72 TGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQV  146 (794)
T ss_pred             EecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcceEEEEE
Confidence            99999999999999998776   7999999999999999999  8999999999999999864 6788999999999999


Q ss_pred             eccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECC
Q 001295          508 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD  587 (1106)
Q Consensus       508 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  587 (1106)
                      +|.|..+ +.+++++.|++|++|.+....+..++.+|...|.++.+.+.|.                   ..++++|+.|
T Consensus       147 ~fnPkD~-ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gd-------------------kpylIsgaDD  206 (794)
T KOG0276|consen  147 AFNPKDP-NTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGD-------------------KPYLISGADD  206 (794)
T ss_pred             EecCCCc-cceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCC-------------------cceEEecCCC
Confidence            9988654 7999999999999999999999999999999999999887764                   3579999999


Q ss_pred             CeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCc
Q 001295          588 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTI  667 (1106)
Q Consensus       588 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  667 (1106)
                      .+|+|||..+..+++++.+|.+  .|..+.|+|.-.++++|+.||+++||+..+- +....+.                 
T Consensus       207 ~tiKvWDyQtk~CV~TLeGHt~--Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty-~lE~tLn-----------------  266 (794)
T KOG0276|consen  207 LTIKVWDYQTKSCVQTLEGHTN--NVSFVFFHPELPIIISGSEDGTVRIWNSKTY-KLEKTLN-----------------  266 (794)
T ss_pred             ceEEEeecchHHHHHHhhcccc--cceEEEecCCCcEEEEecCCccEEEecCcce-ehhhhhh-----------------
Confidence            9999999999999999998855  7999999999999999999999999987654 2222211                 


Q ss_pred             CchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceE
Q 001295          668 SPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKIS  747 (1106)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~  747 (1106)
                                                                                               -.-.++.
T Consensus       267 -------------------------------------------------------------------------~gleRvW  273 (794)
T KOG0276|consen  267 -------------------------------------------------------------------------YGLERVW  273 (794)
T ss_pred             -------------------------------------------------------------------------cCCceEE
Confidence                                                                                     0234667


Q ss_pred             EEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEE
Q 001295          748 RLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMS  827 (1106)
Q Consensus       748 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~  827 (1106)
                      +++-.+.++.+++|.++|.+.+=                                      .......+.+++.|+.+-+
T Consensus       274 ~I~~~k~~~~i~vG~Deg~i~v~--------------------------------------lgreeP~vsMd~~gKIiwa  315 (794)
T KOG0276|consen  274 CIAAHKGDGKIAVGFDEGSVTVK--------------------------------------LGREEPAVSMDSNGKIIWA  315 (794)
T ss_pred             EEeecCCCCeEEEeccCCcEEEE--------------------------------------ccCCCCceeecCCccEEEE
Confidence            77777777778888888877651                                      1222234555666665554


Q ss_pred             EeC--CeEEEEE------cCCCceee----eecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCccc
Q 001295          828 ASG--GKISLFN------MMTFKTMA----TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK  895 (1106)
Q Consensus       828 ~sd--g~i~vwd------~~~~~~~~----~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~  895 (1106)
                      ...  -.+.+-.      +..|+.+.    .+-.-.-....++-|| +|+++++++ ||.-.||..-..+     ..+.+
T Consensus       316 ~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsP-NGrfV~Vcg-dGEyiIyTala~R-----nK~fG  388 (794)
T KOG0276|consen  316 VHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSP-NGRFVVVCG-DGEYIIYTALALR-----NKAFG  388 (794)
T ss_pred             cCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCC-CCcEEEEec-CccEEEEEeeehh-----hcccc
Confidence            432  1122222      22222221    1111111234678889 898888765 8888888743222     12455


Q ss_pred             CeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCc
Q 001295          896 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL  975 (1106)
Q Consensus       896 ~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~  975 (1106)
                      .-....|++|....++--.++.|+++  ++.+..+..  .          .-....+--.|.+|.+..++.+++||.+++
T Consensus       389 ~~~eFvw~~dsne~avRes~~~vki~--knfke~ksi--~----------~~~~~e~i~gg~Llg~~ss~~~~fydW~~~  454 (794)
T KOG0276|consen  389 SGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHKSI--R----------PDMSAEGIFGGPLLGVRSSDFLCFYDWESG  454 (794)
T ss_pred             cceeEEEcCCCCeEEEEecCCceEEE--ecceecccc--c----------cccceeeecCCceEEEEeCCeEEEEEcccc
Confidence            66778999998888888888889988  443321110  0          001122233466677788999999999999


Q ss_pred             eEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEE
Q 001295          976 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1015 (1106)
Q Consensus       976 ~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd 1015 (1106)
                      +.++.+..     ....+.|+.+|.+++.++.|. .+|+.
T Consensus       455 ~lVrrI~v-----~~k~v~w~d~g~lVai~~d~S-fyil~  488 (794)
T KOG0276|consen  455 ELVRRIEV-----TSKHVYWSDNGELVAIAGDDS-FYILK  488 (794)
T ss_pred             eEEEEEee-----ccceeEEecCCCEEEEEecCc-eeEEE
Confidence            99998753     456789999999998887654 44443

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=100.00  E-value=1.9e-35  Score=319.74  Aligned_cols=556  Identities=14%  Similarity=0.182  Sum_probs=414.5

Q ss_pred             CCCCcceeeecc-CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCe
Q 001295          337 EDLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSV  415 (1106)
Q Consensus       337 ~~~~~~~~~~~~-h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V  415 (1106)
                      +.-..+++..-+ +.+.|+|++=..+--| +|.   ...|.+|--  |+.+..                  ++.+|...|
T Consensus        62 d~~kl~ll~vs~~lp~~I~alas~~~~vy-~A~---g~~i~~~~r--gk~i~~------------------~~~~~~a~v  117 (910)
T KOG1539|consen   62 DVNKLNLLFVSKPLPDKITALASDKDYVY-VAS---GNKIYAYAR--GKHIRH------------------TTLLHGAKV  117 (910)
T ss_pred             eccceEEEEecCCCCCceEEEEecCceEE-Eec---CcEEEEEEc--cceEEE------------------EeccccceE
Confidence            333444555543 7899999986655432 322   356666643  433322                  456777777


Q ss_pred             EEEEEccCCCEEEEEeCCCeEEEEEccCC-ceee-eeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCce
Q 001295          416 NRVIWSPDGSLFGVAYSRHIVQIYSYHGG-DEVR-QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK  493 (1106)
Q Consensus       416 ~~l~~spdg~~las~~~d~~v~iwd~~~~-~~~~-~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~  493 (1106)
                      .-+.  |=|.+++++..++.+.||+..++ +... +...++...+.|+++. +|..---.++.|+.+|.+.+|++++++.
T Consensus       118 ~~l~--~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~  194 (910)
T KOG1539|consen  118 HLLL--PFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKV  194 (910)
T ss_pred             EEEe--eecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcE
Confidence            7765  45889999999999999999884 2211 1112222223376664 4543212488999999999999999999


Q ss_pred             eEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEE
Q 001295          494 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  573 (1106)
Q Consensus       494 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~  573 (1106)
                      +++++++...|+++.-+|.-  ..++.|..+|+|.+++++..+.+..++...+.|++++|..||.               
T Consensus       195 v~~f~~~~s~IT~ieqsPaL--DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~---------------  257 (910)
T KOG1539|consen  195 VYTFQEFFSRITAIEQSPAL--DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGN---------------  257 (910)
T ss_pred             EEEecccccceeEeccCCcc--eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCC---------------
Confidence            99999999999999854444  6899999999999999999999999988888899999999987               


Q ss_pred             EcCCCCEEEEEECCCeEEEEECCCcceeEEEc-cCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC---chhhhhh
Q 001295          574 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG---IRLLRTF  649 (1106)
Q Consensus       574 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~  649 (1106)
                           ..+++|+..|.+-+||++..+.+..+. .|  ...+....|-|....+++++.|+.+++|=..++   .+.++.-
T Consensus       258 -----p~las~~~~G~m~~wDLe~kkl~~v~~nah--~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R  330 (910)
T KOG1539|consen  258 -----PLLASGRSNGDMAFWDLEKKKLINVTRNAH--YGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSR  330 (910)
T ss_pred             -----eeEEeccCCceEEEEEcCCCeeeeeeeccc--cCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeec
Confidence                 247788888999999999888777665 34  457899999999999999999999999855543   2445555


Q ss_pred             cccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCC
Q 001295          650 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP  729 (1106)
Q Consensus       650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~  729 (1106)
                      .||+.+..        ++..++                                ..+..+.+++.|++.+.+.+......
T Consensus       331 ~GHs~Pp~--------~irfy~--------------------------------~~g~~ilsa~~Drt~r~fs~~~e~~~  370 (910)
T KOG1539|consen  331 GGHSAPPS--------CIRFYG--------------------------------SQGHFILSAKQDRTLRSFSVISESQS  370 (910)
T ss_pred             cCCCCCch--------heeeec--------------------------------cCcEEEEecccCcchhhhhhhHHHHh
Confidence            66666543        222222                                34677888889998888887643322


Q ss_pred             cccee---------ccc--CccccccceEEEEEcCC-----CceEEEeecCceEEEeeccccccCCCCccccccCccccC
Q 001295          730 NQCRS---------LRL--PENLRATKISRLIFTNS-----GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQ  793 (1106)
Q Consensus       730 ~~~~~---------~~~--~~~~~~~~i~~~~~s~~-----~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~  793 (1106)
                      .....         ...  ...-.-.+|..+++...     .+.+.+.-++...+.|+++...                 
T Consensus       371 ~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~-----------------  433 (910)
T KOG1539|consen  371 QELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKT-----------------  433 (910)
T ss_pred             HhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcc-----------------
Confidence            22211         000  01113345667776542     3334444445788888876422                 


Q ss_pred             CCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeee---cCCCCCeeEEEEecCCCceEEE
Q 001295          794 PPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATF---MPPPPAATFLAFHPQDNNIIAI  869 (1106)
Q Consensus       794 ~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~---~~~~~~v~~l~~s~~d~~~la~  869 (1106)
                        .|+.....-+.......+++++.++.|++.+.|. .|.|.+|++++|-....+   ..|..+|+.++... -++.+++
T Consensus       434 --~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~-~n~~~vs  510 (910)
T KOG1539|consen  434 --SGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLVS  510 (910)
T ss_pred             --cccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecC-CCceEEE
Confidence              1221111000011457799999999999999998 799999999999988888   58999999999987 7889999


Q ss_pred             eeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCce
Q 001295          870 GMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTR  949 (1106)
Q Consensus       870 g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  949 (1106)
                      ++.+|.+.+||..+..++..++- ...++++..+.....+|.+..|-.|+++|+.+.+     ....+.||..   .|+.
T Consensus       511 a~~~Gilkfw~f~~k~l~~~l~l-~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~k-----vvR~f~gh~n---ritd  581 (910)
T KOG1539|consen  511 AGADGILKFWDFKKKVLKKSLRL-GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRK-----VVREFWGHGN---RITD  581 (910)
T ss_pred             ccCcceEEEEecCCcceeeeecc-CCCcceeeeeehhhhhhhhcCceeEEEEEchhhh-----hhHHhhcccc---ceee
Confidence            99999999999999888888763 4568889999999999999999999999998843     4556667764   8999


Q ss_pred             EEEcCCCcEEEE-EeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcC-CeEEEEE
Q 001295          950 VQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-ATVCVFS 1015 (1106)
Q Consensus       950 ~~~s~dg~~l~~-~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~D-g~i~vwd 1015 (1106)
                      ++|||||++|++ +.|++|++||+.++.++..+..   ..+.+++.|||+|.+|||+..| .-|++|-
T Consensus       582 ~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v---d~~~~sls~SPngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  582 MTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV---DSPCTSLSFSPNGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             eEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec---CCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence            999999999999 6899999999999999988764   6799999999999999999998 5699996

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=5.8e-37  Score=290.25  Aligned_cols=260  Identities=21%  Similarity=0.306  Sum_probs=220.4

Q ss_pred             eeeecc-CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEc
Q 001295          343 VTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  421 (1106)
Q Consensus       343 ~~~~~~-h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s  421 (1106)
                      +..++. |++.|+.++..+.+..++.+++.|.++.+|++.......-.              ....+.||+..|..+..+
T Consensus         7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~--------------~~r~~~GHsH~v~dv~~s   72 (315)
T KOG0279|consen    7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGV--------------PVRRLTGHSHFVSDVVLS   72 (315)
T ss_pred             eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCc--------------eeeeeeccceEecceEEc
Confidence            334455 99999999999998889999999999999998764222111              111478999999999999


Q ss_pred             cCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEecc-
Q 001295          422 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH-  500 (1106)
Q Consensus       422 pdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h-  500 (1106)
                      +||++.++++.|+++++||+.+|+..+   .|.||...|.+++|++|++  .++||+.|++|++||+.. .+..++..+ 
T Consensus        73 ~dg~~alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~g-~ck~t~~~~~  146 (315)
T KOG0279|consen   73 SDGNFALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTLG-VCKYTIHEDS  146 (315)
T ss_pred             cCCceEEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeecc-cEEEEEecCC
Confidence            999999999999999999999997655   5889999999999999999  699999999999999654 445555443 


Q ss_pred             -CCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCC
Q 001295          501 -EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN  579 (1106)
Q Consensus       501 -~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~  579 (1106)
                       .+.|.|++|+|+.+..+|++++.|++|++||+++.+....+.+|.+.++.++++|||.                     
T Consensus       147 ~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGs---------------------  205 (315)
T KOG0279|consen  147 HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGS---------------------  205 (315)
T ss_pred             CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCC---------------------
Confidence             7899999999998778999999999999999999888888899988888888888776                     


Q ss_pred             EEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhh
Q 001295          580 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRT  648 (1106)
Q Consensus       580 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  648 (1106)
                      .+++|+.||.+.+||++.++.+..+..   ...|.+++|+|+...|+.+.. ..|+|||+.++ .++..
T Consensus       206 lcasGgkdg~~~LwdL~~~k~lysl~a---~~~v~sl~fspnrywL~~at~-~sIkIwdl~~~-~~v~~  269 (315)
T KOG0279|consen  206 LCASGGKDGEAMLWDLNEGKNLYSLEA---FDIVNSLCFSPNRYWLCAATA-TSIKIWDLESK-AVVEE  269 (315)
T ss_pred             EEecCCCCceEEEEEccCCceeEeccC---CCeEeeEEecCCceeEeeccC-CceEEEeccch-hhhhh
Confidence            688899999999999999999888854   346999999999877776665 56999999887 44443

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2e-36  Score=288.14  Aligned_cols=286  Identities=16%  Similarity=0.224  Sum_probs=251.1

Q ss_pred             ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEE
Q 001295          407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  486 (1106)
Q Consensus       407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw  486 (1106)
                      +|+||.+.|.++.|++|.++|++++.||.+.|||.-+....+   -+.-....|..++|+|.|+  +++.||.|+...||
T Consensus        50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aipl~s~WVMtCA~sPSg~--~VAcGGLdN~Csiy  124 (343)
T KOG0286|consen   50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIPLPSSWVMTCAYSPSGN--FVACGGLDNKCSIY  124 (343)
T ss_pred             EecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee---EEecCceeEEEEEECCCCC--eEEecCcCceeEEE
Confidence            589999999999999999999999999999999998876554   3445678999999999999  89999999999999


Q ss_pred             eCCCC------ceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEec-CCCe
Q 001295          487 DATNG------AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA-DGTR  559 (1106)
Q Consensus       487 d~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~  559 (1106)
                      ++.+.      ...+.+.+|.+.+.++.|..  | ..|++++.|.+..+||++++.....+.+|.+.|.++.++| +++ 
T Consensus       125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~d--D-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n-  200 (343)
T KOG0286|consen  125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLD--D-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN-  200 (343)
T ss_pred             ecccccccccceeeeeecCccceeEEEEEcC--C-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC-
Confidence            99854      34567999999999999854  3 5799999999999999999999999999999999998888 554 


Q ss_pred             EEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEc
Q 001295          560 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT  639 (1106)
Q Consensus       560 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~  639 (1106)
                                          .+++|+-|+..++||++.+.++++|.+|.  ..|+++.|.|+|.-+++|++|++.|+||+
T Consensus       201 --------------------tFvSg~cD~~aklWD~R~~~c~qtF~ghe--sDINsv~ffP~G~afatGSDD~tcRlyDl  258 (343)
T KOG0286|consen  201 --------------------TFVSGGCDKSAKLWDVRSGQCVQTFEGHE--SDINSVRFFPSGDAFATGSDDATCRLYDL  258 (343)
T ss_pred             --------------------eEEecccccceeeeeccCcceeEeecccc--cccceEEEccCCCeeeecCCCceeEEEee
Confidence                                79999999999999999999999999875  48999999999999999999999999999


Q ss_pred             cCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCcee
Q 001295          640 SDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSK  719 (1106)
Q Consensus       640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~  719 (1106)
                      +.+. .+..                                                                       
T Consensus       259 RaD~-~~a~-----------------------------------------------------------------------  266 (343)
T KOG0286|consen  259 RADQ-ELAV-----------------------------------------------------------------------  266 (343)
T ss_pred             cCCc-EEee-----------------------------------------------------------------------
Confidence            8761 1110                                                                       


Q ss_pred             eEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCc
Q 001295          720 VWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIM  799 (1106)
Q Consensus       720 vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~  799 (1106)
                                                     |+++                                             
T Consensus       267 -------------------------------ys~~---------------------------------------------  270 (343)
T KOG0286|consen  267 -------------------------------YSHD---------------------------------------------  270 (343)
T ss_pred             -------------------------------eccC---------------------------------------------
Confidence                                           0000                                             


Q ss_pred             cccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEE
Q 001295          800 MTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQI  878 (1106)
Q Consensus       800 ~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~i  878 (1106)
                              ....+|++++||..|++|.+|. |.++.+||.-.++....+.+|.+.|+|+..+| ||.-+++|+.|.+++|
T Consensus       271 --------~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~-DG~av~TgSWDs~lri  341 (343)
T KOG0286|consen  271 --------SIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSP-DGMAVATGSWDSTLRI  341 (343)
T ss_pred             --------cccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECC-CCcEEEecchhHheee
Confidence                    0244578899999999998887 88999999999999999999999999999999 9999999999999999


Q ss_pred             EE
Q 001295          879 YN  880 (1106)
Q Consensus       879 wd  880 (1106)
                      |.
T Consensus       342 W~  343 (343)
T KOG0286|consen  342 WA  343 (343)
T ss_pred             cC
Confidence            94

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=100.00  E-value=6.3e-35  Score=297.50  Aligned_cols=509  Identities=19%  Similarity=0.265  Sum_probs=372.4

Q ss_pred             ceeeeccCCCCcEEEEEecCCCeEEEEEeccC--------cEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCc
Q 001295          342 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVG--------DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV  413 (1106)
Q Consensus       342 ~~~~~~~h~~~v~~~~~sp~g~~llatg~~dg--------~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~  413 (1106)
                      .+...++|++.|-|++.+||.- .+|+|...|        .|+|||..+-..+..                   +..-..
T Consensus        96 ~Qr~y~GH~ddikc~~vHPdri-~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V-------------------~g~f~~  155 (626)
T KOG2106|consen   96 SQRHYLGHNDDIKCMAVHPDRI-RVATGQGAGTSGRPLQPHVRIWDSVTLSTLHV-------------------IGFFDR  155 (626)
T ss_pred             hcccccCCCCceEEEeecCCce-eeccCcccccCCCcCCCeeeecccccceeeee-------------------eccccc
Confidence            3455678999999999999987 488887766        399999777665553                   455567


Q ss_pred             CeEEEEEcc--CCCEEEEE--eCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCC
Q 001295          414 SVNRVIWSP--DGSLFGVA--YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT  489 (1106)
Q Consensus       414 ~V~~l~~sp--dg~~las~--~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~  489 (1106)
                      .|.|++||+  .|.+|+..  +.+..+.|||...+.....   ...-...|....|.|.+.+ ++++++ .+.+..|+.+
T Consensus       156 GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~---vk~sne~v~~a~FHPtd~n-liit~G-k~H~~Fw~~~  230 (626)
T KOG2106|consen  156 GVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGP---VKTSNEVVFLATFHPTDPN-LIITCG-KGHLYFWTLR  230 (626)
T ss_pred             cceeeeecccCCCceEEEecCCCccccchhhchhhhccCc---ceeccceEEEEEeccCCCc-EEEEeC-CceEEEEEcc
Confidence            899999999  45666654  4557799999998776553   3345678999999999987 677777 5899999999


Q ss_pred             CCceeEE---Eecc-CCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeee
Q 001295          490 NGAKQYI---FEGH-EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR  565 (1106)
Q Consensus       490 ~~~~~~~---~~~h-~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~  565 (1106)
                      .+....+   +..+ ...|.|++|.++.+   +++|..+|.|.+|+............|.+.|.+++...+|.       
T Consensus       231 ~~~l~k~~~~fek~ekk~Vl~v~F~engd---viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-------  300 (626)
T KOG2106|consen  231 GGSLVKRQGIFEKREKKFVLCVTFLENGD---VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-------  300 (626)
T ss_pred             CCceEEEeeccccccceEEEEEEEcCCCC---EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-------
Confidence            8876543   4433 36689999876654   89999999999999977666655568899999999999997       


Q ss_pred             ccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchh
Q 001295          566 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL  645 (1106)
Q Consensus       566 ~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  645 (1106)
                                     |++|+.|..|..|| ..-+.++..+.....+.++.++-...+  |++|+..+.|..=.+.++...
T Consensus       301 ---------------llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~~~~f~~  362 (626)
T KOG2106|consen  301 ---------------LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTTRNFILQGTLENGFTL  362 (626)
T ss_pred             ---------------EeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCc--EEEeeccceEEEeeecCCceE
Confidence                           88899999999999 555556666655666677766654433  777777666654444333110


Q ss_pred             hhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCC
Q 001295          646 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE  725 (1106)
Q Consensus       646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~  725 (1106)
                      .                                                                               
T Consensus       363 ~-------------------------------------------------------------------------------  363 (626)
T KOG2106|consen  363 T-------------------------------------------------------------------------------  363 (626)
T ss_pred             E-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             CCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccC
Q 001295          726 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT  805 (1106)
Q Consensus       726 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  805 (1106)
                                   ..+|......++..|+.+.+++++.|+.+++|+-..               -+|...          
T Consensus       364 -------------v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k---------------~~wt~~----------  405 (626)
T KOG2106|consen  364 -------------VQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHK---------------LEWTKI----------  405 (626)
T ss_pred             -------------EEecccceeeEEcCCChhheeeccCcceEEEccCCc---------------eeEEEE----------
Confidence                         023667788899999999999999999999997211               122211          


Q ss_pred             CCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecc
Q 001295          806 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD  884 (1106)
Q Consensus       806 ~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~  884 (1106)
                         -..++.|+.|.|.| .+|.|. .|...+.|.++...+..-. ...++++++|+| +|.+||+|+.|+.|+||.+...
T Consensus       406 ---~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d~~~ls~v~ysp-~G~~lAvgs~d~~iyiy~Vs~~  479 (626)
T KOG2106|consen  406 ---IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-DNEQLSVVRYSP-DGAFLAVGSHDNHIYIYRVSAN  479 (626)
T ss_pred             ---ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-cCCceEEEEEcC-CCCEEEEecCCCeEEEEEECCC
Confidence               46678899999999 888888 8999999999955554444 488899999999 9999999999999999998753


Q ss_pred             -eEEEEe-cCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE
Q 001295          885 -EVKSKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV  962 (1106)
Q Consensus       885 -~~~~~l-~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~  962 (1106)
                       ...... +.|..+|+.|.||+|+++|.+.+.|-.|..|.-..  +..     .        .++..+.|..        
T Consensus       480 g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~--~~~-----~--------ts~kDvkW~t--------  536 (626)
T KOG2106|consen  480 GRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSE--CKQ-----I--------TSVKDVKWAT--------  536 (626)
T ss_pred             CcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcccc--Ccc-----c--------ceecceeeee--------
Confidence             333222 22448999999999999999999999999993322  111     0        0122333311        


Q ss_pred             eCCeEEEEecCCceEeeec--ccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCc
Q 001295          963 HETQLAIFETTKLECVKQW--VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNV 1040 (1106)
Q Consensus       963 ~d~~v~i~d~~~~~~~~~~--~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v 1040 (1106)
                                  ..|.-.|  ....|...|..++-+.+.++||+|.+.|+|++|...--+..+.+  +.+..  |.+. +
T Consensus       537 ------------~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~--he~~g--hs~~-v  599 (626)
T KOG2106|consen  537 ------------YTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPS--HEYGG--HSSH-V  599 (626)
T ss_pred             ------------eEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccc--eeecc--ccce-e
Confidence                        1111111  11356778888999999999999999999999998765544322  22333  3233 4


Q ss_pred             cceEEEEeCCCCCEEEEEeCCCcEEEEee
Q 001295         1041 HPLVIAAHPQEPNEFALGLSDGGVHVFEP 1069 (1106)
Q Consensus      1041 ~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~ 1069 (1106)
                      .  .++|...| ..+++.+.|.+|..|++
T Consensus       600 t--~V~Fl~~d-~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  600 T--NVAFLCKD-SHLISTGKDTSIMQWRL  625 (626)
T ss_pred             E--EEEEeeCC-ceEEecCCCceEEEEEe
Confidence            4  79999855 56666669999999997

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=3.6e-36  Score=284.87  Aligned_cols=296  Identities=15%  Similarity=0.228  Sum_probs=250.3

Q ss_pred             cccccceEEEEEcCC-CceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEE
Q 001295          740 NLRATKISRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL  818 (1106)
Q Consensus       740 ~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~  818 (1106)
                      .+|.+.|+.++..+. ...+++++.|..+.+|++...                 |...|..+.. +.|  |...|..++.
T Consensus        12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d-----------------d~~~G~~~r~-~~G--HsH~v~dv~~   71 (315)
T KOG0279|consen   12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD-----------------DIKYGVPVRR-LTG--HSHFVSDVVL   71 (315)
T ss_pred             cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC-----------------ccccCceeee-eec--cceEecceEE
Confidence            459999999999887 556778888999999998743                 3334444433 444  9999999999


Q ss_pred             ecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCc--cc
Q 001295          819 SKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH--SK  895 (1106)
Q Consensus       819 s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h--~~  895 (1106)
                      ++||++.++++ |+++++||+.+++..+.|.+|...|.+++|++ |++.|++|+.|.+|.+|++... +..++..+  .+
T Consensus        72 s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~  149 (315)
T KOG0279|consen   72 SSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHRE  149 (315)
T ss_pred             ccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeeccc-EEEEEecCCCcC
Confidence            99999999999 99999999999999999999999999999999 8999999999999999998754 44444333  78


Q ss_pred             CeeEEEEecC--CCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEec
Q 001295          896 RITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFET  972 (1106)
Q Consensus       896 ~V~~l~~s~d--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d~  972 (1106)
                      -|+|+.|+|+  ..+|+++|.|++|++||+++.+     ....+.||.   ..+..+++||||..+++ +.|+.+.+||+
T Consensus       150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~-----l~~~~~gh~---~~v~t~~vSpDGslcasGgkdg~~~LwdL  221 (315)
T KOG0279|consen  150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ-----LRTTFIGHS---GYVNTVTVSPDGSLCASGGKDGEAMLWDL  221 (315)
T ss_pred             cEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc-----hhhcccccc---ccEEEEEECCCCCEEecCCCCceEEEEEc
Confidence            8999999998  7899999999999999999844     345555665   48999999999999999 58999999999


Q ss_pred             CCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCC
Q 001295          973 TKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEP 1052 (1106)
Q Consensus       973 ~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~ 1052 (1106)
                      +.++++..+   +|...|.+++|+|+.-+|+.+ .+..|+|||++++..+..+.+..-.+ ....+.+..++++|++ ||
T Consensus       222 ~~~k~lysl---~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~-s~~~~~~~clslaws~-dG  295 (315)
T KOG0279|consen  222 NEGKNLYSL---EAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGP-SSKAGDPICLSLAWSA-DG  295 (315)
T ss_pred             cCCceeEec---cCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhcccccccc-ccccCCcEEEEEEEcC-CC
Confidence            999997776   678999999999998777766 46679999999999998887554444 2234457778999999 79


Q ss_pred             CEEEEEeCCCcEEEEeecC
Q 001295         1053 NEFALGLSDGGVHVFEPLE 1071 (1106)
Q Consensus      1053 ~~l~t~~~Dg~v~vW~~~~ 1071 (1106)
                      ..|++|..|+.|++|.+..
T Consensus       296 ~tLf~g~td~~irv~qv~~  314 (315)
T KOG0279|consen  296 QTLFAGYTDNVIRVWQVAK  314 (315)
T ss_pred             cEEEeeecCCcEEEEEeec
Confidence            9999999999999999854

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=4.8e-35  Score=310.21  Aligned_cols=547  Identities=17%  Similarity=0.231  Sum_probs=385.4

Q ss_pred             EEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCC---EEEEEe
Q 001295          355 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS---LFGVAY  431 (1106)
Q Consensus       355 ~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~---~las~~  431 (1106)
                      ...|.|.+  ++|.|. ...|.+||..+.....                   .+.||..+|+|+.|-|+.+   ++++|+
T Consensus        19 v~sw~~~~--~vafGa-~~~Iav~dp~k~~i~t-------------------~l~GH~a~VnC~~~l~~s~~~a~~vsG~   76 (764)
T KOG1063|consen   19 VSSWGPGG--LVAFGA-GPAIAVADPEKILIVT-------------------TLDGHVARVNCVHWLPTSEIVAEMVSGD   76 (764)
T ss_pred             cccccccc--eEEecC-CceEEEeCcccceeEE-------------------eccCCccceEEEEEcccccccceEEEcc
Confidence            34455655  466655 4789999987653332                   4899999999999999888   899999


Q ss_pred             CCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCc--eeEEEeccCCCe--EEE
Q 001295          432 SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA--KQYIFEGHEAPV--YSV  507 (1106)
Q Consensus       432 ~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~h~~~v--~~~  507 (1106)
                      .|+.|++|.++. +.+.....+.+|...+.|+.  ..-.  .......|+++.+||.+..+  +...+.-..+.+  .|+
T Consensus        77 sD~~v~lW~l~~-~~~~~i~~~~g~~~~~~cv~--a~~~--~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL  151 (764)
T KOG1063|consen   77 SDGRVILWKLRD-EYLIKIYTIQGHCKECVCVV--ARSS--VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCL  151 (764)
T ss_pred             CCCcEEEEEEee-hheEEEEeecCcceeEEEEE--eeee--EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHH
Confidence            999999999994 34555667888766665554  2222  22223689999999985555  233333222333  344


Q ss_pred             eccccCCceEEEEEecCCeEEEEeCCCC--CceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEE
Q 001295          508 CPHHKENIQFIFSTALDGKIKAWLYDNL--GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG  585 (1106)
Q Consensus       508 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  585 (1106)
                      ++.+..+.-+++.|+.+..|.++.-...  .....+.+|.++|.+++|...+.                  +.-+|++++
T Consensus       152 ~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~------------------~~~~laS~S  213 (764)
T KOG1063|consen  152 AALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGG------------------DDLLLASSS  213 (764)
T ss_pred             hhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCC------------------CcEEEEecC
Confidence            4444344445666777778888755432  34557889999999999987664                  223588899


Q ss_pred             CCCeEEEEECCCcc---------------------eeEEEc--------cCCCCCCcCeEEEccCCCEEEEEeCCCcEEE
Q 001295          586 DDFSIKFWDMDSVQ---------------------LLTSID--------ADGGLPASPRIRFNKDGCLLAVSTNDNGIKI  636 (1106)
Q Consensus       586 ~d~~i~iwd~~~~~---------------------~~~~~~--------~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i  636 (1106)
                      .|..||||.+.-+.                     ....+.        ..+|.+.|.++.|+|.+..|++++.|.++.+
T Consensus       214 QD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmii  293 (764)
T KOG1063|consen  214 QDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMII  293 (764)
T ss_pred             CceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEE
Confidence            99999999864322                     010111        1245668999999999988999999999999


Q ss_pred             EEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCC
Q 001295          637 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND  716 (1106)
Q Consensus       637 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  716 (1106)
                      |...+..-.   ..                                                                 .
T Consensus       294 W~pd~~tGi---Wv-----------------------------------------------------------------~  305 (764)
T KOG1063|consen  294 WKPDENTGI---WV-----------------------------------------------------------------D  305 (764)
T ss_pred             EecCCccce---EE-----------------------------------------------------------------E
Confidence            965433000   00                                                                 0


Q ss_pred             ceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCC
Q 001295          717 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPS  796 (1106)
Q Consensus       717 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~  796 (1106)
                      .+++=.+                .+......+..|+|+++.+++-+..|..++|....              ...|... 
T Consensus       306 ~vRlGe~----------------gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d--------------~~~w~~~-  354 (764)
T KOG1063|consen  306 VVRLGEV----------------GGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKD--------------KTFWTQE-  354 (764)
T ss_pred             EEEeecc----------------cccccceeeEEEcCCCCEEEEecccCcEEEEeccC--------------ccceeec-
Confidence            0000000                01334567788999999999999999999997221              1123321 


Q ss_pred             CCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCC----ceeeeecCCCCCeeEEEEecCCCceEEEee
Q 001295          797 GIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTF----KTMATFMPPPPAATFLAFHPQDNNIIAIGM  871 (1106)
Q Consensus       797 ~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~----~~~~~~~~~~~~v~~l~~s~~d~~~la~g~  871 (1106)
                           ..+.  +|...|+.++|+|.|.+|++.+ |-+-|+|-.-..    ..+..-+-|...++|++|-+ ....+++|.
T Consensus       355 -----~~iS--GH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn-~~~~FVSgA  426 (764)
T KOG1063|consen  355 -----PVIS--GHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN-EDLQFVSGA  426 (764)
T ss_pred             -----cccc--cccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehcc-CCceeeecc
Confidence                 1122  4999999999999999999999 999999875521    22333455788899999988 677888888


Q ss_pred             CCCcEEEEEee-------------------------------------------cce-----------------------
Q 001295          872 DDSSIQIYNVR-------------------------------------------VDE-----------------------  885 (1106)
Q Consensus       872 ~dg~v~iwd~~-------------------------------------------~~~-----------------------  885 (1106)
                      +...+|+|+..                                           +|.                       
T Consensus       427 dEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~E  506 (764)
T KOG1063|consen  427 DEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTE  506 (764)
T ss_pred             cceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChH
Confidence            88999999841                                           010                       


Q ss_pred             ----------EEEEecCcccCeeEEEEecCCCEEEEEcCCC-----cEEEEeCCCcccccceeecccCCCCCCCCCCceE
Q 001295          886 ----------VKSKLKGHSKRITGLAFSHALNVLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRV  950 (1106)
Q Consensus       886 ----------~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~  950 (1106)
                                .++++.||...|++++.+|+|+++||++...     .|++|+..++.+     .+...+|..   .|+.+
T Consensus       507 dqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~-----~~~L~~HsL---TVT~l  578 (764)
T KOG1063|consen  507 DQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ-----VQELEGHSL---TVTRL  578 (764)
T ss_pred             HHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh-----hheecccce---EEEEE
Confidence                      1123568999999999999999999998653     489999998664     334556664   89999


Q ss_pred             EEcCCCcEEEE-EeCCeEEEEecCCceEeeecc---cCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCc--eeEEe
Q 001295          951 QFHQDQIHFLV-VHETQLAIFETTKLECVKQWV---PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL--KLRCR 1024 (1106)
Q Consensus       951 ~~s~dg~~l~~-~~d~~v~i~d~~~~~~~~~~~---~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~--~~~~~ 1024 (1106)
                      +|||||++|++ +.|+++.+|....... ..+.   ...|+.-|.+..|+||+.++||+|.|.+|+||.....  +.+.+
T Consensus       579 ~FSpdg~~LLsvsRDRt~sl~~~~~~~~-~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~  657 (764)
T KOG1063|consen  579 AFSPDGRYLLSVSRDRTVSLYEVQEDIK-DEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISR  657 (764)
T ss_pred             EECCCCcEEEEeecCceEEeeeeecccc-hhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhh
Confidence            99999999998 7999999998743321 1111   4589999999999999999999999999999999888  44444


Q ss_pred             eCCCcccCCCCCCCCccceEEEEeCCCCC----EEEEEeCCCcEEEEeec
Q 001295         1025 INPSAYLPAGVSSSNVHPLVIAAHPQEPN----EFALGLSDGGVHVFEPL 1070 (1106)
Q Consensus      1025 ~~~~~~~~~~~~~~~v~~~~~~~~~~d~~----~l~t~~~Dg~v~vW~~~ 1070 (1106)
                      +.   .++.   +..|.  +++|.|.+..    .++.|-..|.|.+|+..
T Consensus       658 ~a---~~~~---~~aVT--Av~~~~~~~~e~~~~vavGle~GeI~l~~~~  699 (764)
T KOG1063|consen  658 FA---CLKF---SLAVT--AVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK  699 (764)
T ss_pred             hc---hhcc---CCcee--eEEeeccccccccceEEEEecccEEEEEecc
Confidence            32   1222   23355  6677665444    78899999999999976

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.1e-35  Score=292.07  Aligned_cols=339  Identities=17%  Similarity=0.249  Sum_probs=284.8

Q ss_pred             ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEE
Q 001295          407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  486 (1106)
Q Consensus       407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw  486 (1106)
                      .|..|++.|.+++.+|+.+++|+|+.|....||++.+|+...   .+.+|...|+++.|+.||.  +||||+.+|.|+||
T Consensus        59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~---eltgHKDSVt~~~Fshdgt--lLATGdmsG~v~v~  133 (399)
T KOG0296|consen   59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG---ELTGHKDSVTCCSFSHDGT--LLATGDMSGKVLVF  133 (399)
T ss_pred             ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee---EecCCCCceEEEEEccCce--EEEecCCCccEEEE
Confidence            478999999999999999999999999999999999998554   6889999999999999999  89999999999999


Q ss_pred             eCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeec
Q 001295          487 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  566 (1106)
Q Consensus       487 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  566 (1106)
                      ...++.....+...-..+.=+.|+|..  ..|+.|+.||.+-+|.+.+......+.+|+.++++-.|.|+|+        
T Consensus       134 ~~stg~~~~~~~~e~~dieWl~WHp~a--~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGK--------  203 (399)
T KOG0296|consen  134 KVSTGGEQWKLDQEVEDIEWLKWHPRA--HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGK--------  203 (399)
T ss_pred             EcccCceEEEeecccCceEEEEecccc--cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCc--------
Confidence            999999998887677788888998854  7999999999999999998877778888888888777777776        


Q ss_pred             cceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhh
Q 001295          567 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL  646 (1106)
Q Consensus       567 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  646 (1106)
                                   .++++..||+|++||..+++++..+....+ ....++.++..+..++.|+.++.+++.+..++ +.+
T Consensus       204 -------------r~~tgy~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg-KVv  268 (399)
T KOG0296|consen  204 -------------RILTGYDDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSG-KVV  268 (399)
T ss_pred             -------------eEEEEecCceEEEEecCCCceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccc-eEE
Confidence                         689999999999999999999999875553 35788999999999999999999988876665 111


Q ss_pred             hhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCC
Q 001295          647 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL  726 (1106)
Q Consensus       647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~  726 (1106)
                      ....+                                                                           
T Consensus       269 ~~~n~---------------------------------------------------------------------------  273 (399)
T KOG0296|consen  269 NCNNG---------------------------------------------------------------------------  273 (399)
T ss_pred             EecCC---------------------------------------------------------------------------
Confidence            11100                                                                           


Q ss_pred             CCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCC
Q 001295          727 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  806 (1106)
Q Consensus       727 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  806 (1106)
                                                 .+..+....                                            
T Consensus       274 ---------------------------~~~~l~~~~--------------------------------------------  282 (399)
T KOG0296|consen  274 ---------------------------TVPELKPSQ--------------------------------------------  282 (399)
T ss_pred             ---------------------------CCccccccc--------------------------------------------
Confidence                                       000000000                                            


Q ss_pred             CCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecce
Q 001295          807 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE  885 (1106)
Q Consensus       807 ~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~  885 (1106)
                      ......|..+.++..-.+.|+|+ ||+|.|||+...+..+.+. |...|+.+.|-+  ..+|++++.||.|+.||.++|+
T Consensus       283 e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~  359 (399)
T KOG0296|consen  283 EELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQ  359 (399)
T ss_pred             hhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccc
Confidence            00233344555666677888998 9999999999876655554 888899999986  5689999999999999999999


Q ss_pred             EEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCC
Q 001295          886 VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD  924 (1106)
Q Consensus       886 ~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~  924 (1106)
                      ++.++.||...|.+++++|+.++++++|.|++.+|+++.
T Consensus       360 l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  360 LKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             eEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            999999999999999999999999999999999999874

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.2e-34  Score=300.94  Aligned_cols=470  Identities=18%  Similarity=0.217  Sum_probs=348.0

Q ss_pred             cCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEe
Q 001295          408 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD  487 (1106)
Q Consensus       408 ~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd  487 (1106)
                      +..++..|.++.|+|...+++++-.+|.|.|||.++...++   .+.-..-+|.+..|-+...  .+++|++|..|+|++
T Consensus         9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn   83 (794)
T KOG0276|consen    9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN   83 (794)
T ss_pred             hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence            45689999999999999999999999999999999988776   4556778999999998877  899999999999999


Q ss_pred             CCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCC-CceeEeeCCCCeeEEEEEecCCCeEEEeeec
Q 001295          488 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  566 (1106)
Q Consensus       488 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  566 (1106)
                      ..+++.+..|..|.+.|.+++.+|..  .++++++.|-+|++||++.. .+.+.+.+|.+-|.+++|.|...        
T Consensus        84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~--------  153 (794)
T KOG0276|consen   84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDP--------  153 (794)
T ss_pred             cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCc--------
Confidence            99999999999999999999999876  69999999999999999875 45668999999999999998765        


Q ss_pred             cceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEcc--CCCEEEEEeCCCcEEEEEccCCch
Q 001295          567 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK--DGCLLAVSTNDNGIKILATSDGIR  644 (1106)
Q Consensus       567 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~--~~~~l~~~~~dg~i~iwd~~~~~~  644 (1106)
                                  +.+++++-|++|++|.+.+..+..++.+|  ...|+|+.|-+  |..+|++|++|.+++|||..+. .
T Consensus       154 ------------ntFaS~sLDrTVKVWslgs~~~nfTl~gH--ekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-~  218 (794)
T KOG0276|consen  154 ------------NTFASASLDRTVKVWSLGSPHPNFTLEGH--EKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK-S  218 (794)
T ss_pred             ------------cceeeeeccccEEEEEcCCCCCceeeecc--ccCcceEEeccCCCcceEEecCCCceEEEeecchH-H
Confidence                        46999999999999999999999999877  45899999988  5579999999999999999888 7


Q ss_pred             hhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecC
Q 001295          645 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT  724 (1106)
Q Consensus       645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~  724 (1106)
                      ++++++|                                                                         
T Consensus       219 CV~TLeG-------------------------------------------------------------------------  225 (794)
T KOG0276|consen  219 CVQTLEG-------------------------------------------------------------------------  225 (794)
T ss_pred             HHHHhhc-------------------------------------------------------------------------
Confidence            8888765                                                                         


Q ss_pred             CCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCcccccc
Q 001295          725 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV  804 (1106)
Q Consensus       725 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  804 (1106)
                                       |...|..+.|.|.-..+++++.||+++||.-.+-                      ++... +
T Consensus       226 -----------------Ht~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty----------------------~lE~t-L  265 (794)
T KOG0276|consen  226 -----------------HTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY----------------------KLEKT-L  265 (794)
T ss_pred             -----------------ccccceEEEecCCCcEEEEecCCccEEEecCcce----------------------ehhhh-h
Confidence                             5567788999999999999999999999975421                      11110 0


Q ss_pred             CCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEE----EeeCCCcEEEEE
Q 001295          805 TDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIA----IGMDDSSIQIYN  880 (1106)
Q Consensus       805 ~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la----~g~~dg~v~iwd  880 (1106)
                        ...-..+.|++..+.+..+++|.|....+..+........+...    ..|-|+. .+....    +.+.++     +
T Consensus       266 --n~gleRvW~I~~~k~~~~i~vG~Deg~i~v~lgreeP~vsMd~~----gKIiwa~-~~ei~~~~~ks~~~~~-----e  333 (794)
T KOG0276|consen  266 --NYGLERVWCIAAHKGDGKIAVGFDEGSVTVKLGREEPAVSMDSN----GKIIWAV-HSEIQAVNLKSVGAQK-----E  333 (794)
T ss_pred             --hcCCceEEEEeecCCCCeEEEeccCCcEEEEccCCCCceeecCC----ccEEEEc-CceeeeeeceeccCcc-----c
Confidence              01467799999999999999999765555555544443333211    1222332 111111    111111     2


Q ss_pred             eecceEEE----EecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCC
Q 001295          881 VRVDEVKS----KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ  956 (1106)
Q Consensus       881 ~~~~~~~~----~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg  956 (1106)
                      +..|+.+.    .+-.-.-.-..++-+|+|++++.++ ||.-+||..-..+       ...-      +.-...+|++|.
T Consensus       334 v~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~Vcg-dGEyiIyTala~R-------nK~f------G~~~eFvw~~ds  399 (794)
T KOG0276|consen  334 VTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCG-DGEYIIYTALALR-------NKAF------GSGLEFVWAADS  399 (794)
T ss_pred             ccCCccccchhhhccccccchHHhccCCCCcEEEEec-CccEEEEEeeehh-------hccc------ccceeEEEcCCC
Confidence            33343221    1111111123577789998887765 7778888633211       1111      244678999997


Q ss_pred             cEEEE-EeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCC
Q 001295          957 IHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV 1035 (1106)
Q Consensus       957 ~~l~~-~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 1035 (1106)
                      ...++ -+++.|.++  ++.+..+.+....+...|      -.|.+|. ...++.+++||.+++++++++.         
T Consensus       400 ne~avRes~~~vki~--knfke~ksi~~~~~~e~i------~gg~Llg-~~ss~~~~fydW~~~~lVrrI~---------  461 (794)
T KOG0276|consen  400 NEFAVRESNGNVKIF--KNFKEHKSIRPDMSAEGI------FGGPLLG-VRSSDFLCFYDWESGELVRRIE---------  461 (794)
T ss_pred             CeEEEEecCCceEEE--ecceeccccccccceeee------cCCceEE-EEeCCeEEEEEcccceEEEEEe---------
Confidence            77777 578889998  777777777644332111      1344444 4557789999999999999998         


Q ss_pred             CCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeec
Q 001295         1036 SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1070 (1106)
Q Consensus      1036 ~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~ 1070 (1106)
                          +.+-.+.|+. +|.+++.++ |-+.++..+.
T Consensus       462 ----v~~k~v~w~d-~g~lVai~~-d~Sfyil~~n  490 (794)
T KOG0276|consen  462 ----VTSKHVYWSD-NGELVAIAG-DDSFYILKFN  490 (794)
T ss_pred             ----eccceeEEec-CCCEEEEEe-cCceeEEEec
Confidence                4444688886 566666666 4555666554

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8e-34  Score=307.67  Aligned_cols=489  Identities=17%  Similarity=0.254  Sum_probs=346.7

Q ss_pred             CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEE
Q 001295          349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  428 (1106)
Q Consensus       349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  428 (1106)
                      ....|..++|+|...+ +.++-..|.|.+||+.-+.++.+                   +..|.++|..++|+|++.+++
T Consensus         8 kSsRvKglsFHP~rPw-ILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qplFV   67 (1202)
T KOG0292|consen    8 KSSRVKGLSFHPKRPW-ILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQPLFV   67 (1202)
T ss_pred             ccccccceecCCCCCE-EEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCCeEE
Confidence            4578999999999996 77889999999999998888774                   789999999999999999999


Q ss_pred             EEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEe
Q 001295          429 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC  508 (1106)
Q Consensus       429 s~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~  508 (1106)
                      +||.|-.|+||+.++.+++.   ++.||-+.|..+.|++.-.  .++|+|+|.+|+||++.+++++..+.||...|.|..
T Consensus        68 SGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAq  142 (1202)
T KOG0292|consen   68 SGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQ  142 (1202)
T ss_pred             ecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEEeec
Confidence            99999999999999876554   7999999999999999888  899999999999999999999999999999999999


Q ss_pred             ccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCC-CCeeEE------EEEecCC--CeEEEeeeccceeEEEEcCCCC
Q 001295          509 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP-GRWCTT------MAYSADG--TRTYQGFRKRSLGVVQFDTTKN  579 (1106)
Q Consensus       509 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~------~~~s~~~--~~~~~~~~~~~i~~~~~~~~~~  579 (1106)
                      |+|+.  .+++++|.|.+||+||+........-.+. ......      +--.+|-  +.++.||.. .++-++|+|.-.
T Consensus       143 FhptE--DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDR-GVNwaAfhpTlp  219 (1202)
T KOG0292|consen  143 FHPTE--DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDR-GVNWAAFHPTLP  219 (1202)
T ss_pred             cCCcc--ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccccc-ccceEEecCCcc
Confidence            99887  48999999999999998743332211110 000000      0000111  144555554 788899999999


Q ss_pred             EEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccC
Q 001295          580 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT  659 (1106)
Q Consensus       580 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  659 (1106)
                      .+++|+.|..|++|.+...+.-..-...+|...|.++-|+|...++++.+.|++|+|||+... ..++.++.        
T Consensus       220 liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR-t~v~tfrr--------  290 (1202)
T KOG0292|consen  220 LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR-TSVQTFRR--------  290 (1202)
T ss_pred             eEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc-cceeeeec--------
Confidence            999999999999999977665444444456778999999999999999999999999998755 33332211        


Q ss_pred             CCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCc
Q 001295          660 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE  739 (1106)
Q Consensus       660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~  739 (1106)
                                                                                                      
T Consensus       291 --------------------------------------------------------------------------------  290 (1202)
T KOG0292|consen  291 --------------------------------------------------------------------------------  290 (1202)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEe
Q 001295          740 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS  819 (1106)
Q Consensus       740 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s  819 (1106)
                        ...+...++..|..+. ++++.|+.+.+|.++                                   ...++.+  + 
T Consensus       291 --endRFW~laahP~lNL-fAAgHDsGm~VFkle-----------------------------------RErpa~~--v-  329 (1202)
T KOG0292|consen  291 --ENDRFWILAAHPELNL-FAAGHDSGMIVFKLE-----------------------------------RERPAYA--V-  329 (1202)
T ss_pred             --cCCeEEEEEecCCcce-eeeecCCceEEEEEc-----------------------------------ccCceEE--E-
Confidence              3356678888999984 455566566666654                                   1223333  2 


Q ss_pred             cCCCEEEEEeCCeEEEEEcCCCcee--eeecCC---CCCeeEEEEecCCCceEEEeeCC-CcEEEEEeecceE-----EE
Q 001295          820 KNDSYVMSASGGKISLFNMMTFKTM--ATFMPP---PPAATFLAFHPQDNNIIAIGMDD-SSIQIYNVRVDEV-----KS  888 (1106)
Q Consensus       820 ~~~~~l~~~sdg~i~vwd~~~~~~~--~~~~~~---~~~v~~l~~s~~d~~~la~g~~d-g~v~iwd~~~~~~-----~~  888 (1106)
                       ++..|...-|..|+-+|+.+.+-.  ..++..   ..++.++.++|..+..+++...| |..-++.+.+...     ..
T Consensus       330 -~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~  408 (1202)
T KOG0292|consen  330 -NGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKD  408 (1202)
T ss_pred             -cCCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchh
Confidence             344455555889999999874432  334333   35789999999555555554444 4444554433210     00


Q ss_pred             EecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEE
Q 001295          889 KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLA  968 (1106)
Q Consensus       889 ~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~  968 (1106)
                      ..+  .....++-.. -+++.+---.+..+.+=++.+...   +.+...       .....+.+..+|.+|+. +...|.
T Consensus       409 ~~k--~tG~~a~fva-rNrfavl~k~~~~v~ik~l~N~vt---kkl~~~-------~~~~~IF~ag~g~lll~-~~~~v~  474 (1202)
T KOG0292|consen  409 VKK--GTGEGALFVA-RNRFAVLDKSNEQVVIKNLKNKVT---KKLLLP-------ESTDDIFYAGTGNLLLR-SPDSVT  474 (1202)
T ss_pred             hhc--CCCCceEEEE-ecceEEEEecCcceEEecccchhh---hcccCc-------ccccceeeccCccEEEE-cCCeEE
Confidence            111  1112222222 223333333355566666665221   111111       13456677777766554 556799


Q ss_pred             EEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEE
Q 001295          969 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1015 (1106)
Q Consensus       969 i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd 1015 (1106)
                      +||+.....+..+.    -..|..+.||+|..+++.-+ -.+|.|.+
T Consensus       475 lfdvQq~~~~~si~----~s~vkyvvws~dm~~vAll~-Kh~i~i~~  516 (1202)
T KOG0292|consen  475 LFDVQQKKKVGSIK----VSKVKYVVWSNDMSRVALLS-KHTITIAD  516 (1202)
T ss_pred             EEEeecceEEEEEe----cCceeEEEEcCccchhhhcc-cceEEEEe
Confidence            99999999888887    56899999999998877654 34566655

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2.9e-35  Score=273.44  Aligned_cols=297  Identities=18%  Similarity=0.295  Sum_probs=239.6

Q ss_pred             eEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccC
Q 001295          364 TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHG  443 (1106)
Q Consensus       364 ~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~  443 (1106)
                      -||++++.|.+|++|...+|.+..+                   +....+.|..+.+.||+++||+++. ..|++||+.+
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S   70 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNS   70 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccC-CeeEEEEccC
Confidence            4899999999999999999999874                   4556678999999999999999875 5599999999


Q ss_pred             CceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEec
Q 001295          444 GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL  523 (1106)
Q Consensus       444 ~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~  523 (1106)
                      +..- +..++.+|...|+++.|..||+  .++|||+||+++|||++...+.+.++ |..+|++++.+|..  ..|++|..
T Consensus        71 ~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQ--teLis~dq  144 (311)
T KOG0315|consen   71 NNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQ--TELISGDQ  144 (311)
T ss_pred             CCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCc--ceEEeecC
Confidence            8753 5668999999999999999999  89999999999999999977766666 77999999877655  35666666


Q ss_pred             CCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEE
Q 001295          524 DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTS  603 (1106)
Q Consensus       524 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  603 (1106)
                      +|.|++||+.+                                                               ..+...
T Consensus       145 sg~irvWDl~~---------------------------------------------------------------~~c~~~  161 (311)
T KOG0315|consen  145 SGNIRVWDLGE---------------------------------------------------------------NSCTHE  161 (311)
T ss_pred             CCcEEEEEccC---------------------------------------------------------------Cccccc
Confidence            66666666653                                                               222222


Q ss_pred             EccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhccccc
Q 001295          604 IDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGL  683 (1106)
Q Consensus       604 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  683 (1106)
                      +..+. ...|.++...|||.+++.+.+.|..++|++-+. .....                  |.|..            
T Consensus       162 liPe~-~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~-~~~s~------------------l~P~~------------  209 (311)
T KOG0315|consen  162 LIPED-DTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNH-QTASE------------------LEPVH------------  209 (311)
T ss_pred             cCCCC-CcceeeEEEcCCCcEEEEecCCccEEEEEccCC-Ccccc------------------ceEhh------------
Confidence            22111 235888999999999999999999999987653 10000                  00000            


Q ss_pred             ccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeec
Q 001295          684 ADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS  763 (1106)
Q Consensus       684 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  763 (1106)
                                                                                              +       
T Consensus       210 ------------------------------------------------------------------------k-------  210 (311)
T KOG0315|consen  210 ------------------------------------------------------------------------K-------  210 (311)
T ss_pred             ------------------------------------------------------------------------h-------
Confidence                                                                                    0       


Q ss_pred             CceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCC-
Q 001295          764 NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTF-  841 (1106)
Q Consensus       764 dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~-  841 (1106)
                                                              ++  .|...+..+.+|||+++||+++ |.+++||+.++. 
T Consensus       211 ----------------------------------------~~--ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~  248 (311)
T KOG0315|consen  211 ----------------------------------------FQ--AHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFF  248 (311)
T ss_pred             ----------------------------------------ee--cccceEEEEEECCCCcEEEeecCCceEEEEecCCce
Confidence                                                    01  1777788888999999999888 899999999887 


Q ss_pred             ceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEe
Q 001295          842 KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS  903 (1106)
Q Consensus       842 ~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s  903 (1106)
                      +.-..+.+|...+..++||. |++||++|+.|+.+++|++..++.++...+|.....|++..
T Consensus       249 kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  249 KLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             eeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence            55567889999999999999 99999999999999999999999999999999988888764

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.6e-36  Score=293.24  Aligned_cols=271  Identities=17%  Similarity=0.279  Sum_probs=236.5

Q ss_pred             eeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc
Q 001295          343 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  422 (1106)
Q Consensus       343 ~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp  422 (1106)
                      ...+.+|...|+.+-|+|+-. ++++++.|++|++||..+|+...                   .+.||.+.|..++|+.
T Consensus       101 ~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~-------------------~LrGHt~sv~di~~~a  160 (406)
T KOG0295|consen  101 VQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELER-------------------SLRGHTDSVFDISFDA  160 (406)
T ss_pred             hhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhh-------------------hhhccccceeEEEEec
Confidence            334456999999999999988 79999999999999999998865                   4899999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCC
Q 001295          423 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA  502 (1106)
Q Consensus       423 dg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~  502 (1106)
                      .|++||+++.|-.+++||..+.  .++...+.+|...|.+++|-|.|.  +++|++.|.+|+.|++.+|.+++++.+|..
T Consensus       161 ~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~~h~e  236 (406)
T KOG0295|consen  161 SGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFPGHSE  236 (406)
T ss_pred             CccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEeccCchH
Confidence            9999999999999999999863  233346789999999999999998  899999999999999999999999999999


Q ss_pred             CeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEc-CCCCEE
Q 001295          503 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD-TTKNRF  581 (1106)
Q Consensus       503 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~-~~~~~l  581 (1106)
                      .|..+..  ..||.++++++.|.+|++|-+.++.+...+..|..+|.+++|.|....--       +....-+ ..+.++
T Consensus       237 wvr~v~v--~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~-------i~~at~~~~~~~~l  307 (406)
T KOG0295|consen  237 WVRMVRV--NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPS-------ISEATGSTNGGQVL  307 (406)
T ss_pred             hEEEEEe--cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcc-------hhhccCCCCCccEE
Confidence            9999984  67889999999999999999999988999999999999999988764110       0000000 134689


Q ss_pred             EEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhh
Q 001295          582 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF  649 (1106)
Q Consensus       582 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  649 (1106)
                      .+++.|++|++||+.++.++.++.+|..  .|..++|+|.|+||+++.+|+++++||+.+. ++.+.+
T Consensus       308 ~s~SrDktIk~wdv~tg~cL~tL~ghdn--wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~-~cmk~~  372 (406)
T KOG0295|consen  308 GSGSRDKTIKIWDVSTGMCLFTLVGHDN--WVRGVAFSPGGKYILSCADDKTLRVWDLKNL-QCMKTL  372 (406)
T ss_pred             EeecccceEEEEeccCCeEEEEEecccc--eeeeeEEcCCCeEEEEEecCCcEEEEEeccc-eeeecc
Confidence            9999999999999999999999998854  8999999999999999999999999999887 555444

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.1e-35  Score=295.88  Aligned_cols=343  Identities=19%  Similarity=0.306  Sum_probs=273.8

Q ss_pred             CCCCCCCCCCCCCCccccccccCCCCCCccc-----ccccccC-cccccCCCCCCCCCCCCCCCCCCCcceeeec-c-CC
Q 001295          279 TPPTNPSVDYPSGDSDHLSKRTRPIGISDEI-----NLPVNVL-PVSFTGHSHSHSHSQAFSTPEDLPKTVTRTL-N-QG  350 (1106)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-h~  350 (1106)
                      .+..++.+||+.....+.+.|...++....+     .+.+++| +..|...-           ...++.+..++- . -+
T Consensus        28 k~~~Rr~VDy~s~v~~~~~nR~~~~~~d~~~~~p~~~~~~~~~pp~~~~~dp-----------~~~~~tKf~h~s~NKvk   96 (464)
T KOG0284|consen   28 KPVARRTVDYNSPVCNYRQNRRWQYDRDRALLQPDSSYIIDLVPPSLYLDDP-----------SSAFTTKFVHTSSNKVK   96 (464)
T ss_pred             chhhhcccCCCcHHHHHHHHHhhcccccccccCCCchhhhcccChhhccCCc-----------ccccccceEeccccccc
Confidence            3444788999988887776666555422222     4455555 23333211           122333333333 2 45


Q ss_pred             CCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEE
Q 001295          351 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA  430 (1106)
Q Consensus       351 ~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~  430 (1106)
                      ..|..|.|.|+|++ |++|+..|.+.+|+..+      .+|+             .++..|..+|+++.||++|.++++|
T Consensus        97 c~V~~v~WtPeGRR-Lltgs~SGEFtLWNg~~------fnFE-------------tilQaHDs~Vr~m~ws~~g~wmiSg  156 (464)
T KOG0284|consen   97 CPVNVVRWTPEGRR-LLTGSQSGEFTLWNGTS------FNFE-------------TILQAHDSPVRTMKWSHNGTWMISG  156 (464)
T ss_pred             cceeeEEEcCCCce-eEeecccccEEEecCce------eeHH-------------HHhhhhcccceeEEEccCCCEEEEc
Confidence            68999999999998 88999999999999632      2222             2578999999999999999999999


Q ss_pred             eCCCeEEEEEccCCceeeeeeeeccc-cCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEec
Q 001295          431 YSRHIVQIYSYHGGDEVRQHLEIDAH-VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP  509 (1106)
Q Consensus       431 ~~d~~v~iwd~~~~~~~~~~~~l~~h-~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~  509 (1106)
                      +.+|.|++|+..-... +   .+.+| ...|.+++|+|++.  .|+++++||+|+|||....+.-..+.||...|.++.|
T Consensus       157 D~gG~iKyWqpnmnnV-k---~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdW  230 (464)
T KOG0284|consen  157 DKGGMIKYWQPNMNNV-K---IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDW  230 (464)
T ss_pred             CCCceEEecccchhhh-H---HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCcceecc
Confidence            9999999999875432 2   34555 48999999999888  7999999999999999999999999999999999999


Q ss_pred             cccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCe
Q 001295          510 HHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS  589 (1106)
Q Consensus       510 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  589 (1106)
                      +|..  .++++||.|..|++||.+++.++.++..|...|..+.|++++.                     +|++++.|..
T Consensus       231 HP~k--gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N---------------------~Llt~skD~~  287 (464)
T KOG0284|consen  231 HPTK--GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGN---------------------WLLTGSKDQS  287 (464)
T ss_pred             CCcc--ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCC---------------------eeEEccCCce
Confidence            9887  5899999999999999999999999988888777777766664                     8999999999


Q ss_pred             EEEEECCCcceeEEEccCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcC
Q 001295          590 IKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTIS  668 (1106)
Q Consensus       590 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  668 (1106)
                      ++++|+++.+.+.++++|  ...|+++.|+| ...+|.+|+.||.|..|.+... ..+.                     
T Consensus       288 ~kv~DiR~mkEl~~~r~H--kkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~-~p~~---------------------  343 (464)
T KOG0284|consen  288 CKVFDIRTMKELFTYRGH--KKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLE-EPLG---------------------  343 (464)
T ss_pred             EEEEehhHhHHHHHhhcc--hhhheeeccccccccceeeccCCCceEEEecccc-cccc---------------------
Confidence            999999988888888877  44799999999 7889999999999999987522 1110                     


Q ss_pred             chhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEE
Q 001295          669 PISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISR  748 (1106)
Q Consensus       669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~  748 (1106)
                                                                                          ....+|...|.+
T Consensus       344 --------------------------------------------------------------------~i~~AHd~~iws  355 (464)
T KOG0284|consen  344 --------------------------------------------------------------------EIPPAHDGEIWS  355 (464)
T ss_pred             --------------------------------------------------------------------CCCcccccceee
Confidence                                                                                011348899999


Q ss_pred             EEEcCCCceEEEeecCceEEEeecc
Q 001295          749 LIFTNSGNAILALASNAIHLLWKWQ  773 (1106)
Q Consensus       749 ~~~s~~~~~l~~~~~dg~i~iw~~~  773 (1106)
                      +++.|-|..|++++.|.+++.|.-.
T Consensus       356 l~~hPlGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  356 LAYHPLGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             eeccccceeEeecCCCcceeeeccC
Confidence            9999999999999999999999754

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=9.7e-34  Score=278.39  Aligned_cols=332  Identities=15%  Similarity=0.190  Sum_probs=263.6

Q ss_pred             eeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc
Q 001295          343 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  422 (1106)
Q Consensus       343 ~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp  422 (1106)
                      +.....|++.|.+++.+|+.+ ++|||+.|..-.||++.+++....                   +.+|+..|+|+.||.
T Consensus        57 ~~tF~~H~~svFavsl~P~~~-l~aTGGgDD~AflW~~~~ge~~~e-------------------ltgHKDSVt~~~Fsh  116 (399)
T KOG0296|consen   57 LVTFDKHTDSVFAVSLHPNNN-LVATGGGDDLAFLWDISTGEFAGE-------------------LTGHKDSVTCCSFSH  116 (399)
T ss_pred             eeehhhcCCceEEEEeCCCCc-eEEecCCCceEEEEEccCCcceeE-------------------ecCCCCceEEEEEcc
Confidence            334445999999999999777 799999999999999999986653                   799999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCC
Q 001295          423 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA  502 (1106)
Q Consensus       423 dg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~  502 (1106)
                      ||.+||+|+.+|.|+||+..++....   .+......|.-+.|+|-+.  +|+.|+.||.+.+|.+.++...+.+.||..
T Consensus       117 dgtlLATGdmsG~v~v~~~stg~~~~---~~~~e~~dieWl~WHp~a~--illAG~~DGsvWmw~ip~~~~~kv~~Gh~~  191 (399)
T KOG0296|consen  117 DGTLLATGDMSGKVLVFKVSTGGEQW---KLDQEVEDIEWLKWHPRAH--ILLAGSTDGSVWMWQIPSQALCKVMSGHNS  191 (399)
T ss_pred             CceEEEecCCCccEEEEEcccCceEE---EeecccCceEEEEeccccc--EEEeecCCCcEEEEECCCcceeeEecCCCC
Confidence            99999999999999999999988665   3445567888999999888  899999999999999999888999999999


Q ss_pred             CeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEE
Q 001295          503 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  582 (1106)
Q Consensus       503 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~  582 (1106)
                      ++++=.|.|+  |+.++++..||+|++|+..+..+...+....+                    ....++.++..+..++
T Consensus       192 ~ct~G~f~pd--GKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~--------------------~~~~~~~~~~~~~~~~  249 (399)
T KOG0296|consen  192 PCTCGEFIPD--GKRILTGYDDGTIIVWNPKTGQPLHKITQAEG--------------------LELPCISLNLAGSTLT  249 (399)
T ss_pred             CcccccccCC--CceEEEEecCceEEEEecCCCceeEEeccccc--------------------CcCCccccccccceeE
Confidence            9999998654  78999999999999999999877766553221                    1333444555555788


Q ss_pred             EEECCCeEEEEECCCcceeEEEccC------CCCCCcCe---EEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccc
Q 001295          583 AAGDDFSIKFWDMDSVQLLTSIDAD------GGLPASPR---IRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA  653 (1106)
Q Consensus       583 ~~~~d~~i~iwd~~~~~~~~~~~~~------~~~~~v~~---v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  653 (1106)
                      .|..++.+++-+..+|+.+....+.      ++...+.+   +.++..-.+.|+|+-||+|.|||....           
T Consensus       250 ~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~-----------  318 (399)
T KOG0296|consen  250 KGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS-----------  318 (399)
T ss_pred             eccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc-----------
Confidence            8888999999888888877766521      01112222   233334445555555555555554322           


Q ss_pred             cccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccce
Q 001295          654 YDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCR  733 (1106)
Q Consensus       654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~  733 (1106)
                                                                                                      
T Consensus       319 --------------------------------------------------------------------------------  318 (399)
T KOG0296|consen  319 --------------------------------------------------------------------------------  318 (399)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCe
Q 001295          734 SLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAV  813 (1106)
Q Consensus       734 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v  813 (1106)
                                                                .                      +..  .  -.|...|
T Consensus       319 ------------------------------------------~----------------------~R~--~--c~he~~V  330 (399)
T KOG0296|consen  319 ------------------------------------------T----------------------LRH--I--CEHEDGV  330 (399)
T ss_pred             ------------------------------------------h----------------------hhe--e--ccCCCce
Confidence                                                      0                      000  0  0177778


Q ss_pred             eEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEee
Q 001295          814 PCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR  882 (1106)
Q Consensus       814 ~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~  882 (1106)
                      +.+.|-+ ..+|++++ +|.|+.||.++|+++.++.+|...|.+++++| +.+++++++.|++.+||++.
T Consensus       331 ~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  331 TKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSP-QKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             EEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence            8888888 66777777 99999999999999999999999999999999 89999999999999999864

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=6.2e-34  Score=288.57  Aligned_cols=279  Identities=15%  Similarity=0.259  Sum_probs=242.5

Q ss_pred             cccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecC
Q 001295          742 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  821 (1106)
Q Consensus       742 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~  821 (1106)
                      ....|++++|+.+|..|+++..||.+++|+...                       .+... +  ..|.++|.++.|+.+
T Consensus       234 ~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G-----------------------~l~~t-l--~~HkgPI~slKWnk~  287 (524)
T KOG0273|consen  234 SNKDVTSLDWNNDGTLLATGSEDGEARIWNKDG-----------------------NLIST-L--GQHKGPIFSLKWNKK  287 (524)
T ss_pred             ccCCcceEEecCCCCeEEEeecCcEEEEEecCc-----------------------hhhhh-h--hccCCceEEEEEcCC
Confidence            456899999999999999999999999998652                       21111 1  139999999999999


Q ss_pred             CCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEE
Q 001295          822 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL  900 (1106)
Q Consensus       822 ~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l  900 (1106)
                      |.||++++ |+++.+||..++...+.+.-|..+-..+.|-.  ..-+|+.+.||.|+|+.+....++.++.||.++|.+|
T Consensus       288 G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~--~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~al  365 (524)
T KOG0273|consen  288 GTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS--NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNAL  365 (524)
T ss_pred             CCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEec--CceEeecCCCceEEEEEecCCCcceeeecccCceEEE
Confidence            99999999 99999999999999999998888877888874  5578889999999999999999999999999999999


Q ss_pred             EEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCC---------cEEEE-EeCCeEEEE
Q 001295          901 AFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ---------IHFLV-VHETQLAIF  970 (1106)
Q Consensus       901 ~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg---------~~l~~-~~d~~v~i~  970 (1106)
                      .|.|.|.+|+|++.|++++||+.....     +..-+.+|..   .|..+.|+|+|         ..+++ +.|++|++|
T Consensus       366 k~n~tg~LLaS~SdD~TlkiWs~~~~~-----~~~~l~~Hsk---ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lw  437 (524)
T KOG0273|consen  366 KWNPTGSLLASCSDDGTLKIWSMGQSN-----SVHDLQAHSK---EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLW  437 (524)
T ss_pred             EECCCCceEEEecCCCeeEeeecCCCc-----chhhhhhhcc---ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEE
Confidence            999999999999999999999987643     3444455553   78899999864         45555 799999999


Q ss_pred             ecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCC
Q 001295          971 ETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ 1050 (1106)
Q Consensus       971 d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 1050 (1106)
                      |+..+.++..+.  .|..+|++++|||+|+|||+|+.||.|.+|++.++++.+.+.       +  ...|.  .++|+. 
T Consensus       438 dv~~gv~i~~f~--kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~-------~--~~~If--el~Wn~-  503 (524)
T KOG0273|consen  438 DVESGVPIHTLM--KHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ-------G--TGGIF--ELCWNA-  503 (524)
T ss_pred             EccCCceeEeec--cCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeec-------C--CCeEE--EEEEcC-
Confidence            999999999987  899999999999999999999999999999999999998876       2  33366  899998 


Q ss_pred             CCCEEEEEeCCCcEEEEeec
Q 001295         1051 EPNEFALGLSDGGVHVFEPL 1070 (1106)
Q Consensus      1051 d~~~l~t~~~Dg~v~vW~~~ 1070 (1106)
                      +|+.|..+-.||.+++-|+.
T Consensus       504 ~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  504 AGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             CCCEEEEEecCCCceEEEec
Confidence            67999999999999998874

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.7e-34  Score=283.31  Aligned_cols=301  Identities=18%  Similarity=0.325  Sum_probs=260.3

Q ss_pred             eeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEe
Q 001295          452 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL  531 (1106)
Q Consensus       452 ~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd  531 (1106)
                      .+.+|..+|+.+-|.|+-.  +++++++|++|++||..+|++...++||...|.++.|+.  .|.++++++.|-.+.+||
T Consensus       103 ~l~g~r~~vt~v~~hp~~~--~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a--~Gk~l~tcSsDl~~~LWd  178 (406)
T KOG0295|consen  103 KLAGHRSSVTRVIFHPSEA--LVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDA--SGKYLATCSSDLSAKLWD  178 (406)
T ss_pred             hhhccccceeeeeeccCce--EEEEecCCceEEEEEccchhhhhhhhccccceeEEEEec--CccEEEecCCccchhhee
Confidence            4778999999999999988  899999999999999999999999999999999999854  458999999999999999


Q ss_pred             CCC-CCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCC
Q 001295          532 YDN-LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL  610 (1106)
Q Consensus       532 ~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  610 (1106)
                      ..+ .+++..+.+|...|.+++|-|.|.                     ++++++.|.+|+.|++.+|-++.++.+|.. 
T Consensus       179 ~~~~~~c~ks~~gh~h~vS~V~f~P~gd---------------------~ilS~srD~tik~We~~tg~cv~t~~~h~e-  236 (406)
T KOG0295|consen  179 FDTFFRCIKSLIGHEHGVSSVFFLPLGD---------------------HILSCSRDNTIKAWECDTGYCVKTFPGHSE-  236 (406)
T ss_pred             HHHHHHHHHHhcCcccceeeEEEEecCC---------------------eeeecccccceeEEecccceeEEeccCchH-
Confidence            987 455556777777777777766654                     899999999999999999999999998855 


Q ss_pred             CCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccc
Q 001295          611 PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASM  690 (1106)
Q Consensus       611 ~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  690 (1106)
                       .|..+..+.||.++++++.|.++++|-+.++ ++...++.                                       
T Consensus       237 -wvr~v~v~~DGti~As~s~dqtl~vW~~~t~-~~k~~lR~---------------------------------------  275 (406)
T KOG0295|consen  237 -WVRMVRVNQDGTIIASCSNDQTLRVWVVATK-QCKAELRE---------------------------------------  275 (406)
T ss_pred             -hEEEEEecCCeeEEEecCCCceEEEEEeccc-hhhhhhhc---------------------------------------
Confidence             8999999999999999999999999998877 44444432                                       


Q ss_pred             cccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEe
Q 001295          691 VSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLW  770 (1106)
Q Consensus       691 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw  770 (1106)
                                                                         |+..|.+++|.|...+  ....+      
T Consensus       276 ---------------------------------------------------hEh~vEci~wap~~~~--~~i~~------  296 (406)
T KOG0295|consen  276 ---------------------------------------------------HEHPVECIAWAPESSY--PSISE------  296 (406)
T ss_pred             ---------------------------------------------------cccceEEEEecccccC--cchhh------
Confidence                                                               6667778888776531  00000      


Q ss_pred             eccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecC
Q 001295          771 KWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP  849 (1106)
Q Consensus       771 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~  849 (1106)
                                                       ..+  ..+         .++++.+++ |++|++||+.++.++.++.+
T Consensus       297 ---------------------------------at~--~~~---------~~~~l~s~SrDktIk~wdv~tg~cL~tL~g  332 (406)
T KOG0295|consen  297 ---------------------------------ATG--STN---------GGQVLGSGSRDKTIKIWDVSTGMCLFTLVG  332 (406)
T ss_pred             ---------------------------------ccC--CCC---------CccEEEeecccceEEEEeccCCeEEEEEec
Confidence                                             000  011         567899999 99999999999999999999


Q ss_pred             CCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeC
Q 001295          850 PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS  923 (1106)
Q Consensus       850 ~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~  923 (1106)
                      |...|..++|+| +|+||+++.+|+++++||++++++...+..|..-|+++.|+.+..++++|+-|.++++|.-
T Consensus       333 hdnwVr~~af~p-~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  333 HDNWVRGVAFSP-GGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             ccceeeeeEEcC-CCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence            999999999999 9999999999999999999999999999999999999999999999999999999999963

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2.7e-34  Score=280.52  Aligned_cols=254  Identities=19%  Similarity=0.290  Sum_probs=224.2

Q ss_pred             CCCCcceeeecc-CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCe
Q 001295          337 EDLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSV  415 (1106)
Q Consensus       337 ~~~~~~~~~~~~-h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V  415 (1106)
                      ...|-++.+.+. |.+.|.|+++.|-+++ +++|+.|++|+|||+.+|+...+                   +.||-..|
T Consensus       137 WHapwKl~rVi~gHlgWVr~vavdP~n~w-f~tgs~DrtikIwDlatg~Lklt-------------------ltGhi~~v  196 (460)
T KOG0285|consen  137 WHAPWKLYRVISGHLGWVRSVAVDPGNEW-FATGSADRTIKIWDLATGQLKLT-------------------LTGHIETV  196 (460)
T ss_pred             ccCcceehhhhhhccceEEEEeeCCCcee-EEecCCCceeEEEEcccCeEEEe-------------------ecchhhee
Confidence            445666666666 9999999999999885 99999999999999999988763                   89999999


Q ss_pred             EEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeE
Q 001295          416 NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY  495 (1106)
Q Consensus       416 ~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~  495 (1106)
                      ..+++|+--.||.+++.|+.|+.||++..+.++   .+.||-..|.|++..|.-.  .|++|+.|.+++|||+++...+.
T Consensus       197 r~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~  271 (460)
T KOG0285|consen  197 RGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVH  271 (460)
T ss_pred             eeeeecccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEE
Confidence            999999999999999999999999999998877   6889999999999999988  89999999999999999999999


Q ss_pred             EEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEc
Q 001295          496 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD  575 (1106)
Q Consensus       496 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~  575 (1106)
                      .+.||..+|..+.+.+..  ..+++|+.|++|++||++.++....+..|...+.+++..|..                  
T Consensus       272 ~l~GH~~~V~~V~~~~~d--pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e------------------  331 (460)
T KOG0285|consen  272 VLSGHTNPVASVMCQPTD--PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKE------------------  331 (460)
T ss_pred             EecCCCCcceeEEeecCC--CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCch------------------
Confidence            999999999999876543  579999999999999999988888877777766666655544                  


Q ss_pred             CCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295          576 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       576 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                         ..+++++.| .|+-|++..|..+..+.+|  ..-+++++.+.|+ ++++|+++|.+.+||.+++
T Consensus       332 ---~~fASas~d-nik~w~~p~g~f~~nlsgh--~~iintl~~nsD~-v~~~G~dng~~~fwdwksg  391 (460)
T KOG0285|consen  332 ---NLFASASPD-NIKQWKLPEGEFLQNLSGH--NAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSG  391 (460)
T ss_pred             ---hhhhccCCc-cceeccCCccchhhccccc--cceeeeeeeccCc-eEEEcCCceEEEEEecCcC
Confidence               467777766 6999999999999998766  4478899988776 7788999999999999988

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.9e-33  Score=261.43  Aligned_cols=272  Identities=14%  Similarity=0.272  Sum_probs=229.0

Q ss_pred             eEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEEC
Q 001295          516 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM  595 (1106)
Q Consensus       516 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~  595 (1106)
                      -+|+++|.|.+||+|...++.+..++......|..+.+.|+++                     .|++++ ...||+||+
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~---------------------~LAaa~-~qhvRlyD~   68 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKK---------------------DLAAAG-NQHVRLYDL   68 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcc---------------------hhhhcc-CCeeEEEEc
Confidence            5899999999999999999999988888888888888777776                     455554 568999999


Q ss_pred             CCcce--eEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhh
Q 001295          596 DSVQL--LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAA  673 (1106)
Q Consensus       596 ~~~~~--~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  673 (1106)
                      .++..  +.++.++  ...|..+.|..+|+++++|++||+++|||++.. .+.+.+                        
T Consensus        69 ~S~np~Pv~t~e~h--~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~-~~qR~~------------------------  121 (311)
T KOG0315|consen   69 NSNNPNPVATFEGH--TKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL-SCQRNY------------------------  121 (311)
T ss_pred             cCCCCCceeEEecc--CCceEEEEEeecCeEEEecCCCceEEEEeccCc-ccchhc------------------------
Confidence            98765  6666655  557999999999999999999999999999874 222222                        


Q ss_pred             HhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcC
Q 001295          674 AAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTN  753 (1106)
Q Consensus       674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~  753 (1106)
                                                                                         .+...|.++...|
T Consensus       122 -------------------------------------------------------------------~~~spVn~vvlhp  134 (311)
T KOG0315|consen  122 -------------------------------------------------------------------QHNSPVNTVVLHP  134 (311)
T ss_pred             -------------------------------------------------------------------cCCCCcceEEecC
Confidence                                                                               1557889999999


Q ss_pred             CCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCe
Q 001295          754 SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGK  832 (1106)
Q Consensus       754 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~  832 (1106)
                      +...|+++..+|.|++||+.....                      ....++.  ....|.++.+.|||++++.+. .|.
T Consensus       135 nQteLis~dqsg~irvWDl~~~~c----------------------~~~liPe--~~~~i~sl~v~~dgsml~a~nnkG~  190 (311)
T KOG0315|consen  135 NQTELISGDQSGNIRVWDLGENSC----------------------THELIPE--DDTSIQSLTVMPDGSMLAAANNKGN  190 (311)
T ss_pred             CcceEEeecCCCcEEEEEccCCcc----------------------ccccCCC--CCcceeeEEEcCCCcEEEEecCCcc
Confidence            999999999999999999864321                      1112222  567899999999999999998 599


Q ss_pred             EEEEEcCCC------ceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecc-eEEEEecCcccCeeEEEEecC
Q 001295          833 ISLFNMMTF------KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKLKGHSKRITGLAFSHA  905 (1106)
Q Consensus       833 i~vwd~~~~------~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~-~~~~~l~~h~~~V~~l~~s~d  905 (1106)
                      .++|++-+.      ..+..++.|.+.+..+.+|| |+++||+++.|.+++||+.++. +.-..+++|..-++..+||.|
T Consensus       191 cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP-d~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~d  269 (311)
T KOG0315|consen  191 CYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP-DVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSAD  269 (311)
T ss_pred             EEEEEccCCCccccceEhhheecccceEEEEEECC-CCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccC
Confidence            999998653      34456788999999999999 9999999999999999999987 666788999999999999999


Q ss_pred             CCEEEEEcCCCcEEEEeCCCccc
Q 001295          906 LNVLVSSGADSQLCVWSSDGWEK  928 (1106)
Q Consensus       906 ~~~l~s~s~Dg~i~vwd~~~~~~  928 (1106)
                      |.+|++|+.|+++++|++..++.
T Consensus       270 g~YlvTassd~~~rlW~~~~~k~  292 (311)
T KOG0315|consen  270 GEYLVTASSDHTARLWDLSAGKE  292 (311)
T ss_pred             ccEEEecCCCCceeecccccCce
Confidence            99999999999999999998763

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1e-33  Score=271.09  Aligned_cols=294  Identities=20%  Similarity=0.321  Sum_probs=241.0

Q ss_pred             ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEE
Q 001295          407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  486 (1106)
Q Consensus       407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw  486 (1106)
                      .+.+|++.|+.+.|+|+|.+||+|+.|..|.+|++....  ....++++|++.|..+.|.+|+.  .++++|.|++|+.|
T Consensus        42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~w  117 (338)
T KOG0265|consen   42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRGW  117 (338)
T ss_pred             hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceEEEE
Confidence            578999999999999999999999999999999986543  23446889999999999999999  89999999999999


Q ss_pred             eCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeec
Q 001295          487 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  566 (1106)
Q Consensus       487 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  566 (1106)
                      |+++|++++.+++|..-|++++.. ..+-.++.+++.||++++||+++.+.+.++.. ...++++.|             
T Consensus       118 D~~tG~~~rk~k~h~~~vNs~~p~-rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f-------------  182 (338)
T KOG0265|consen  118 DAETGKRIRKHKGHTSFVNSLDPS-RRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGF-------------  182 (338)
T ss_pred             ecccceeeehhccccceeeecCcc-ccCCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEe-------------
Confidence            999999999999999999999843 23336788899999999999998776655432 223444444             


Q ss_pred             cceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhh
Q 001295          567 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL  646 (1106)
Q Consensus       567 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  646 (1106)
                              ...+..+++|+-|+.|++||++.+.....+.+|  .+.|+.+..+++|.++.+-+.|.++++||++.-....
T Consensus       183 --------~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh--~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~  252 (338)
T KOG0265|consen  183 --------KDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGH--ADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQ  252 (338)
T ss_pred             --------cccccceeeccccCceeeeccccCcceEEeecc--cCceeeEEeccCCCccccccccceEEEEEecccCCCC
Confidence                    444457999999999999999999999999977  4589999999999999999999999999985320000


Q ss_pred             hhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCC
Q 001295          647 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL  726 (1106)
Q Consensus       647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~  726 (1106)
                                                                                           ..+.++.    
T Consensus       253 ---------------------------------------------------------------------R~v~if~----  259 (338)
T KOG0265|consen  253 ---------------------------------------------------------------------RCVKIFQ----  259 (338)
T ss_pred             ---------------------------------------------------------------------ceEEEee----
Confidence                                                                                 0011000    


Q ss_pred             CCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCC
Q 001295          727 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  806 (1106)
Q Consensus       727 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  806 (1106)
                                                         +..                                          
T Consensus       260 -----------------------------------g~~------------------------------------------  262 (338)
T KOG0265|consen  260 -----------------------------------GHI------------------------------------------  262 (338)
T ss_pred             -----------------------------------cch------------------------------------------
Confidence                                               000                                          


Q ss_pred             CCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEE
Q 001295          807 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN  880 (1106)
Q Consensus       807 ~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd  880 (1106)
                      .+.......++|+|++..+.+|+ |..+++||..+...+..+.+|.+.|.+++|+| ...+|.+++.|.+|++=.
T Consensus       263 hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp-~e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  263 HNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHP-TEPIILSCSSDKTIYLGE  336 (338)
T ss_pred             hhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecC-CCcEEEEeccCceeEeec
Confidence            00122345678999999999998 99999999999999999999999999999999 889999999999998743

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-31  Score=290.92  Aligned_cols=448  Identities=15%  Similarity=0.262  Sum_probs=316.9

Q ss_pred             CCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeC
Q 001295          409 KDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA  488 (1106)
Q Consensus       409 ~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~  488 (1106)
                      ...+..|..++|+|...+++++-..|.|++||.+-+.++.   .|.+|.++|..++|+|.+.  +|+|||+|..|+||+.
T Consensus         6 EskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWnY   80 (1202)
T KOG0292|consen    6 ESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWNY   80 (1202)
T ss_pred             hcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEec
Confidence            4456789999999999999999999999999999888776   6889999999999999999  9999999999999999


Q ss_pred             CCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccc
Q 001295          489 TNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS  568 (1106)
Q Consensus       489 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~  568 (1106)
                      .+.+++.++.||.+.|..+.|++..  .+++++|.|.+|++|++.+..++..+.+|.+-|.+..|.|...          
T Consensus        81 k~rrclftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptED----------  148 (1202)
T KOG0292|consen   81 KTRRCLFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTED----------  148 (1202)
T ss_pred             ccceehhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccc----------
Confidence            9999999999999999999998776  6999999999999999999999999999999888777766443          


Q ss_pred             eeEEEEcCCCCEEEEEECCCeEEEEECCCcce---------------------------eEEEccCCCCCCcCeEEEccC
Q 001295          569 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL---------------------------LTSIDADGGLPASPRIRFNKD  621 (1106)
Q Consensus       569 i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---------------------------~~~~~~~~~~~~v~~v~~s~~  621 (1106)
                                 .+++++-|.+||+||+..-+.                           +-.+-..+|...|+-++|+|.
T Consensus       149 -----------lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpT  217 (1202)
T KOG0292|consen  149 -----------LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPT  217 (1202)
T ss_pred             -----------eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCC
Confidence                       799999999999999853211                           111112233446777888888


Q ss_pred             CCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCcc
Q 001295          622 GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVR  701 (1106)
Q Consensus       622 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  701 (1106)
                      -.++++|++|..|++|.....                                                           
T Consensus       218 lpliVSG~DDRqVKlWrmnet-----------------------------------------------------------  238 (1202)
T KOG0292|consen  218 LPLIVSGADDRQVKLWRMNET-----------------------------------------------------------  238 (1202)
T ss_pred             cceEEecCCcceeeEEEeccc-----------------------------------------------------------
Confidence            888888888888888865432                                                           


Q ss_pred             ccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCC
Q 001295          702 SLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSG  781 (1106)
Q Consensus       702 ~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~  781 (1106)
                                       +.|.++.      +       ++|.+.|.++.|+|..+.+++.+.|++|+|||+....     
T Consensus       239 -----------------KaWEvDt------c-------rgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt-----  283 (1202)
T KOG0292|consen  239 -----------------KAWEVDT------C-------RGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT-----  283 (1202)
T ss_pred             -----------------cceeehh------h-------hcccCCcceEEecCccceeEecCCCccEEEEeccccc-----
Confidence                             2333332      1       4599999999999999999999999999999986321     


Q ss_pred             ccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEec
Q 001295          782 KATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHP  861 (1106)
Q Consensus       782 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~  861 (1106)
                                       .+.. ++.  ....-+.++..|..+++++|.|+.+.||-++....          +  .+.+ 
T Consensus       284 -----------------~v~t-frr--endRFW~laahP~lNLfAAgHDsGm~VFkleRErp----------a--~~v~-  330 (1202)
T KOG0292|consen  284 -----------------SVQT-FRR--ENDRFWILAAHPELNLFAAGHDSGMIVFKLERERP----------A--YAVN-  330 (1202)
T ss_pred             -----------------ceee-eec--cCCeEEEEEecCCcceeeeecCCceEEEEEcccCc----------e--EEEc-
Confidence                             1111 111  46678899999999999999998888887764332          2  2233 


Q ss_pred             CCCceEEEeeCCCcEEEEEeecce--EEEEecCc---ccCeeEEEEecCCCEE-EEEcCC-CcEEEEeCCCcccccceee
Q 001295          862 QDNNIIAIGMDDSSIQIYNVRVDE--VKSKLKGH---SKRITGLAFSHALNVL-VSSGAD-SQLCVWSSDGWEKQKNRFL  934 (1106)
Q Consensus       862 ~d~~~la~g~~dg~v~iwd~~~~~--~~~~l~~h---~~~V~~l~~s~d~~~l-~s~s~D-g~i~vwd~~~~~~~~~~~~  934 (1106)
                       ++.++.+  .|..|+-+|+.+.+  .+..++..   -.++.++.++|-...+ ++...| +.--++.+...........
T Consensus       331 -~n~LfYv--kd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~  407 (1202)
T KOG0292|consen  331 -GNGLFYV--KDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGK  407 (1202)
T ss_pred             -CCEEEEE--ccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCch
Confidence             3334443  38899999998844  34445543   3678899999976544 443333 4444555443211000000


Q ss_pred             cccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEE
Q 001295          935 QIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCV 1013 (1106)
Q Consensus       935 ~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~v 1013 (1106)
                      ....      +.-....|-..+++.+.. ++.++.+-++.+... +.+..   ...+..|-+.-+|.+|+..  ...|.+
T Consensus       408 ~~~k------~tG~~a~fvarNrfavl~k~~~~v~ik~l~N~vt-kkl~~---~~~~~~IF~ag~g~lll~~--~~~v~l  475 (1202)
T KOG0292|consen  408 DVKK------GTGEGALFVARNRFAVLDKSNEQVVIKNLKNKVT-KKLLL---PESTDDIFYAGTGNLLLRS--PDSVTL  475 (1202)
T ss_pred             hhhc------CCCCceEEEEecceEEEEecCcceEEecccchhh-hcccC---cccccceeeccCccEEEEc--CCeEEE
Confidence            0000      011222333333333332 344455555443222 22211   2245566666677766643  567999


Q ss_pred             EEcCCceeEEeeC
Q 001295         1014 FSAANLKLRCRIN 1026 (1106)
Q Consensus      1014 wd~~~~~~~~~~~ 1026 (1106)
                      ||++.++.+..+.
T Consensus       476 fdvQq~~~~~si~  488 (1202)
T KOG0292|consen  476 FDVQQKKKVGSIK  488 (1202)
T ss_pred             EEeecceEEEEEe
Confidence            9999998888776

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.3e-34  Score=284.23  Aligned_cols=291  Identities=18%  Similarity=0.297  Sum_probs=231.8

Q ss_pred             ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEE
Q 001295          407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  486 (1106)
Q Consensus       407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw  486 (1106)
                      ++..|.+.|+-+.||++|+|||+++.|.+..||++.....++..+++.+|..+|..+.||||++  ++++|+.|..+.+|
T Consensus       219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~~~lw  296 (519)
T KOG0293|consen  219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEVLSLW  296 (519)
T ss_pred             hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHheeec
Confidence            6889999999999999999999999999999999987766777789999999999999999999  89999999999999


Q ss_pred             eCCCCceeEEEe-ccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeee
Q 001295          487 DATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR  565 (1106)
Q Consensus       487 d~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~  565 (1106)
                      |+.+|.+...+. +|...+.+++|.|+  |..+++|+.|+++..||++                                
T Consensus       297 Dv~tgd~~~~y~~~~~~S~~sc~W~pD--g~~~V~Gs~dr~i~~wdlD--------------------------------  342 (519)
T KOG0293|consen  297 DVDTGDLRHLYPSGLGFSVSSCAWCPD--GFRFVTGSPDRTIIMWDLD--------------------------------  342 (519)
T ss_pred             cCCcchhhhhcccCcCCCcceeEEccC--CceeEecCCCCcEEEecCC--------------------------------
Confidence            999999877664 23455666665433  3456666666655555543                                


Q ss_pred             ccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchh
Q 001295          566 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL  645 (1106)
Q Consensus       566 ~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  645 (1106)
                                                      |..+...++-. ...|.+++.++||+++++.+.|..|++++..+... 
T Consensus       343 --------------------------------gn~~~~W~gvr-~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d-  388 (519)
T KOG0293|consen  343 --------------------------------GNILGNWEGVR-DPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD-  388 (519)
T ss_pred             --------------------------------cchhhcccccc-cceeEEEEEcCCCcEEEEEecccceeeechhhhhh-
Confidence                                            12222222211 23588899999999999999999999997644300 


Q ss_pred             hhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCC
Q 001295          646 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE  725 (1106)
Q Consensus       646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~  725 (1106)
                      ..                                                                              
T Consensus       389 r~------------------------------------------------------------------------------  390 (519)
T KOG0293|consen  389 RG------------------------------------------------------------------------------  390 (519)
T ss_pred             hc------------------------------------------------------------------------------
Confidence            00                                                                              


Q ss_pred             CCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccC
Q 001295          726 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT  805 (1106)
Q Consensus       726 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  805 (1106)
                                                      +                                               
T Consensus       391 --------------------------------l-----------------------------------------------  391 (519)
T KOG0293|consen  391 --------------------------------L-----------------------------------------------  391 (519)
T ss_pred             --------------------------------c-----------------------------------------------
Confidence                                            0                                               


Q ss_pred             CCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCC--eeEEEEecCCCceEEEeeCCCcEEEEEee
Q 001295          806 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPA--ATFLAFHPQDNNIIAIGMDDSSIQIYNVR  882 (1106)
Q Consensus       806 ~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~--v~~l~~s~~d~~~la~g~~dg~v~iwd~~  882 (1106)
                       .....+|++++.|.|++++++.- +..|++||++..+.++.+.||...  +..-+|-..+..++|+|++|+.|+||+..
T Consensus       392 -ise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~  470 (519)
T KOG0293|consen  392 -ISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRI  470 (519)
T ss_pred             -ccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEcc
Confidence             00345677888888888777776 788999999988889999998764  55556766466899999999999999999


Q ss_pred             cceEEEEecCcccCeeEEEEecCC-CEEEEEcCCCcEEEEeCCC
Q 001295          883 VDEVKSKLKGHSKRITGLAFSHAL-NVLVSSGADSQLCVWSSDG  925 (1106)
Q Consensus       883 ~~~~~~~l~~h~~~V~~l~~s~d~-~~l~s~s~Dg~i~vwd~~~  925 (1106)
                      +|+++.++.||+..|++|+|+|.. .++||||+||+|+||....
T Consensus       471 sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  471 SGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             CCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence            999999999999999999999964 6799999999999998765

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.3e-30  Score=274.86  Aligned_cols=503  Identities=13%  Similarity=0.168  Sum_probs=350.1

Q ss_pred             CcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccc-cCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCC
Q 001295          412 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAH-VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN  490 (1106)
Q Consensus       412 ~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h-~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~  490 (1106)
                      ..+|.+||||.+.+.||.+-.||.|-||++..+=....  ++.++ ...|.+++|++.++   |.|.+.+|+|.-||+.+
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~--vi~g~~drsIE~L~W~e~~R---LFS~g~sg~i~EwDl~~   99 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEP--VIHGPEDRSIESLAWAEGGR---LFSSGLSGSITEWDLHT   99 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeE--EEecCCCCceeeEEEccCCe---EEeecCCceEEEEeccc
Confidence            34899999999999999999999999999998644333  45554 56899999996665   88999999999999999


Q ss_pred             CceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeE--eeCCCCeeEEEEEecCCCeEEEeeeccc
Q 001295          491 GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD--YEAPGRWCTTMAYSADGTRTYQGFRKRS  568 (1106)
Q Consensus       491 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~~~~~~~~~~  568 (1106)
                      ++.+..+....+.|++++.++..  ..++.|+.||.+..++.........  +.....                     .
T Consensus       100 lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~s---------------------R  156 (691)
T KOG2048|consen  100 LKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKS---------------------R  156 (691)
T ss_pred             CceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccc---------------------e
Confidence            99999999999999999987765  5899999999777776655433321  111222                     4


Q ss_pred             eeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEc-----cCC-CCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295          569 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID-----ADG-GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       569 i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----~~~-~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                      +.++.|+|++..+++|+.||.|++||..++..+....     ... ...-|+++.|-.+ ..|++|...|+|.+||...+
T Consensus       157 vLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~g  235 (691)
T KOG2048|consen  157 VLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFG  235 (691)
T ss_pred             EEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCc
Confidence            5556666666689999999999999999998777322     111 2223556666644 46788888899999988777


Q ss_pred             chhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEe
Q 001295          643 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK  722 (1106)
Q Consensus       643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~  722 (1106)
                       .+++.+.                                                                        
T Consensus       236 -TLiqS~~------------------------------------------------------------------------  242 (691)
T KOG2048|consen  236 -TLIQSHS------------------------------------------------------------------------  242 (691)
T ss_pred             -chhhhhh------------------------------------------------------------------------
Confidence             4433332                                                                        


Q ss_pred             cCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCcccc
Q 001295          723 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN  802 (1106)
Q Consensus       723 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  802 (1106)
                                        .|...|.+++.++++++++++|.|+.+..|...+....             |-....     
T Consensus       243 ------------------~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~-------------wv~~~~-----  286 (691)
T KOG2048|consen  243 ------------------CHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE-------------WVINSR-----  286 (691)
T ss_pred             ------------------hhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccc-------------eeeecc-----
Confidence                              26778999999999999999999998888776532110             221111     


Q ss_pred             ccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeE-EEEecCCCceEEEeeCCCcEEEEE
Q 001295          803 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATF-LAFHPQDNNIIAIGMDDSSIQIYN  880 (1106)
Q Consensus       803 ~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~-l~~s~~d~~~la~g~~dg~v~iwd  880 (1106)
                         ...|...|.+++..++  .+++|+ |.++.+-.....+..........+-.+ +...|  .++|..--.+..+.+|.
T Consensus       287 ---r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~--~~~L~~~w~~h~v~lwr  359 (691)
T KOG2048|consen  287 ---RDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAP--ENRLLVLWKAHGVDLWR  359 (691)
T ss_pred             ---ccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhhhccccccccceeecCc--cceEEEEecccccccee
Confidence               1238899999999887  777777 888777665542222111100111111 22233  34555555577788888


Q ss_pred             eecce---------EEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEE
Q 001295          881 VRVDE---------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ  951 (1106)
Q Consensus       881 ~~~~~---------~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  951 (1106)
                      +.+.-         +++-...-...|.+.+.||||++|+.+.-- .++||.+..........+.   ...........+.
T Consensus       360 lGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~-~~~iy~L~~~~~vk~~~v~---~~~~~~~~a~~i~  435 (691)
T KOG2048|consen  360 LGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVS-RTKIYRLQPDPNVKVINVD---DVPLALLDASAIS  435 (691)
T ss_pred             ccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeecc-ceEEEEeccCcceeEEEec---cchhhhccceeeE
Confidence            76541         122222233558999999999999987643 4788888764322222111   1111113567889


Q ss_pred             EcCCCcEEEE-E-eCCeEEEEecCCceEe--eecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCC
Q 001295          952 FHQDQIHFLV-V-HETQLAIFETTKLECV--KQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINP 1027 (1106)
Q Consensus       952 ~s~dg~~l~~-~-~d~~v~i~d~~~~~~~--~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~ 1027 (1106)
                      |+-|+..++. + ....+.++++++....  ..+...+-...|..|..|+||+|||+.+.+|.|.+|++.+++.......
T Consensus       436 ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~r  515 (691)
T KOG2048|consen  436 FTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVR  515 (691)
T ss_pred             EEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhc
Confidence            9988877776 4 6678888888765432  3333223367899999999999999999999999999999877654420


Q ss_pred             CcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCC
Q 001295         1028 SAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus      1028 ~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
                         ++       ....+++|+|.+.+.|+.+..|+.|+-+|++..+
T Consensus       516 ---ln-------~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~  551 (691)
T KOG2048|consen  516 ---LN-------IDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARN  551 (691)
T ss_pred             ---cC-------cceeeeeccccccCcEEEEecCCeEEEEecchhh
Confidence               11       2233788897778889999999999999995443

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=2.7e-33  Score=268.17  Aligned_cols=256  Identities=18%  Similarity=0.236  Sum_probs=218.9

Q ss_pred             CCcceeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcc-eeEEeeeeeeccCcCCccccccccCCCCcCeEE
Q 001295          339 LPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE-RLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR  417 (1106)
Q Consensus       339 ~~~~~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~  417 (1106)
                      +........+|+++|..+.|+|+|. ++|+|+.|..|.+|++.... ...                   .+++|++.|..
T Consensus        36 l~ap~m~l~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~~-------------------~lkgHsgAVM~   95 (338)
T KOG0265|consen   36 LQAPIMLLPGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCENFW-------------------VLKGHSGAVME   95 (338)
T ss_pred             ccchhhhcCCCcceEEEEEECCCCC-eEeecCCcceEEEEecccccccee-------------------eeccccceeEe
Confidence            3445566677999999999999999 59999999999999975332 222                   47899999999


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEE
Q 001295          418 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF  497 (1106)
Q Consensus       418 l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  497 (1106)
                      +.|.+|++.|++++.|++|+.||+++|++++   .+++|..-|+.+.-+.-|.. ++.|++.|+++++||+++..+++++
T Consensus        96 l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~  171 (338)
T KOG0265|consen   96 LHGMRDGSHILSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTF  171 (338)
T ss_pred             eeeccCCCEEEEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhcc
Confidence            9999999999999999999999999999877   68899999999997766776 7899999999999999999988888


Q ss_pred             eccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCC
Q 001295          498 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT  577 (1106)
Q Consensus       498 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~  577 (1106)
                      . ..-.++++.|...  +..+++|+-|+.|++||++.......+.+|...|+.+..+++|.                   
T Consensus       172 ~-~kyqltAv~f~d~--s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs-------------------  229 (338)
T KOG0265|consen  172 E-NKYQLTAVGFKDT--SDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGS-------------------  229 (338)
T ss_pred             c-cceeEEEEEeccc--ccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCC-------------------
Confidence            6 4567889998544  46899999999999999999999999999999888888888776                   


Q ss_pred             CCEEEEEECCCeEEEEECCC----cceeEEEccCCCCCC--cCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295          578 KNRFLAAGDDFSIKFWDMDS----VQLLTSIDADGGLPA--SPRIRFNKDGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       578 ~~~l~~~~~d~~i~iwd~~~----~~~~~~~~~~~~~~~--v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                        ++++-+.|.++++||++-    .+++..+.++.+...  ...++|+|++..+..|+.|..+++||....
T Consensus       230 --~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r  298 (338)
T KOG0265|consen  230 --FLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR  298 (338)
T ss_pred             --ccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc
Confidence              789999999999999864    345777777655433  346899999999999999999999997553

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.2e-29  Score=269.55  Aligned_cols=499  Identities=15%  Similarity=0.154  Sum_probs=359.7

Q ss_pred             CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCcccccccc-CCCCcCeEEEEEccCCCEE
Q 001295          349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALV-KDPGVSVNRVIWSPDGSLF  427 (1106)
Q Consensus       349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~h~~~V~~l~~spdg~~l  427 (1106)
                      ...+|.++|||.+.+. ||.+-.+|.|.||++..+-....                  ++ .+....|..++|+ ++..|
T Consensus        24 ~Ps~I~slA~s~kS~~-lAvsRt~g~IEiwN~~~~w~~~~------------------vi~g~~drsIE~L~W~-e~~RL   83 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQ-LAVSRTDGNIEIWNLSNNWFLEP------------------VIHGPEDRSIESLAWA-EGGRL   83 (691)
T ss_pred             eccceEEEEEeccCCc-eeeeccCCcEEEEccCCCceeeE------------------EEecCCCCceeeEEEc-cCCeE
Confidence            3578999999999995 99999999999999987544321                  23 3445689999999 45567


Q ss_pred             EEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeE--EEeccCCCeE
Q 001295          428 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY--IFEGHEAPVY  505 (1106)
Q Consensus       428 as~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~h~~~v~  505 (1106)
                      .+.+.+|+|.-||+.+++...   .+....+.|++++.+|.++  .++.|++||.+...+...++..+  .|...++.|.
T Consensus        84 FS~g~sg~i~EwDl~~lk~~~---~~d~~gg~IWsiai~p~~~--~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvL  158 (691)
T KOG2048|consen   84 FSSGLSGSITEWDLHTLKQKY---NIDSNGGAIWSIAINPENT--ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVL  158 (691)
T ss_pred             EeecCCceEEEEecccCceeE---EecCCCcceeEEEeCCccc--eEEeecCCceEEEEecCCceEEEEeecccccceEE
Confidence            788899999999999987665   5677788999999999998  78999999988888888777654  4555678999


Q ss_pred             EEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeC--------CCCeeEEEEEecCCCeEEEeeeccceeEEEEcCC
Q 001295          506 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA--------PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT  577 (1106)
Q Consensus       506 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~  577 (1106)
                      ++.|+++  +..+++|+.||.|++||...+........        ..--|.++.|-.++.                   
T Consensus       159 slsw~~~--~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-------------------  217 (691)
T KOG2048|consen  159 SLSWNPT--GTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST-------------------  217 (691)
T ss_pred             EEEecCC--ccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc-------------------
Confidence            9998654  46799999999999999998766552111        122345555555554                   


Q ss_pred             CCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccc
Q 001295          578 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDAS  657 (1106)
Q Consensus       578 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  657 (1106)
                         +++|...|+|.+||...+.++..+..+.  ..|.+++..+++.++++++-|+.|.-+...++...            
T Consensus       218 ---I~sgDS~G~V~FWd~~~gTLiqS~~~h~--adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~------------  280 (691)
T KOG2048|consen  218 ---IASGDSAGTVTFWDSIFGTLIQSHSCHD--ADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE------------  280 (691)
T ss_pred             ---EEEecCCceEEEEcccCcchhhhhhhhh--cceeEEEEcCCCCeEEEccCCCceEEEEecCCccc------------
Confidence               9999999999999999999999998774  47999999999999999999999988876655210            


Q ss_pred             cCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceeccc
Q 001295          658 RTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL  737 (1106)
Q Consensus       658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~  737 (1106)
                                                                                     |-..            .
T Consensus       281 ---------------------------------------------------------------wv~~------------~  285 (691)
T KOG2048|consen  281 ---------------------------------------------------------------WVIN------------S  285 (691)
T ss_pred             ---------------------------------------------------------------eeee------------c
Confidence                                                                           1000            0


Q ss_pred             CccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEE
Q 001295          738 PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA  817 (1106)
Q Consensus       738 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~  817 (1106)
                      ....|...|.+++..++  .+++++.|.++.+-......+              .+   -.....     ....  .-+.
T Consensus       286 ~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~--------------~~---h~~~~~-----~p~~--~~v~  339 (691)
T KOG2048|consen  286 RRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKN--------------MD---HRQKNL-----FPAS--DRVS  339 (691)
T ss_pred             cccCCcccceeeeeecc--eEEecceeeEEEEccccccCc--------------hh---hhcccc-----cccc--ceee
Confidence            01237788889988888  688999998888754321100              00   000000     0111  1133


Q ss_pred             EecCCCEEEEEeCCeEEEEEcCCCcee---------eeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEE-
Q 001295          818 LSKNDSYVMSASGGKISLFNMMTFKTM---------ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK-  887 (1106)
Q Consensus       818 ~s~~~~~l~~~sdg~i~vwd~~~~~~~---------~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~-  887 (1106)
                      ..+..++++.-....+.+|.+.+....         +........|.+.+.|| +|++||.+. -..++||.++....+ 
T Consensus       340 ~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSP-dg~~Ia~st-~~~~~iy~L~~~~~vk  417 (691)
T KOG2048|consen  340 VAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISP-DGNLIAIST-VSRTKIYRLQPDPNVK  417 (691)
T ss_pred             cCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCC-CCCEEEEee-ccceEEEEeccCccee
Confidence            344455555555788888988654211         22223455699999999 999999876 357888888752221 


Q ss_pred             ----EEecCcccCeeEEEEecCCCEEEEEc-CCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-
Q 001295          888 ----SKLKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-  961 (1106)
Q Consensus       888 ----~~l~~h~~~V~~l~~s~d~~~l~s~s-~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-  961 (1106)
                          .......-.+..+.|+-|+..++.++ .+..+.+.++++........++..    .....|..++.||+|+++|+ 
T Consensus       418 ~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~----~~~~~I~~l~~SsdG~yiaa~  493 (691)
T KOG2048|consen  418 VINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ----AKCPSISRLVVSSDGNYIAAI  493 (691)
T ss_pred             EEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccc----cCCCcceeEEEcCCCCEEEEE
Confidence                11222334567889999998888888 677888888877543222111111    22358899999999999999 


Q ss_pred             EeCCeEEEEecCCceEeeecccCCCCCCeeEEEECC-CCCEEEEEEcCCeEEEEEcCCc
Q 001295          962 VHETQLAIFETTKLECVKQWVPRESSAPITHATFSC-DSQLVYACFLDATVCVFSAANL 1019 (1106)
Q Consensus       962 ~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~-d~~~l~t~s~Dg~i~vwd~~~~ 1019 (1106)
                      +.++.|.+|++++++......  .-...|+.++|+| +...|+.+..|+.|.=||++..
T Consensus       494 ~t~g~I~v~nl~~~~~~~l~~--rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~  550 (691)
T KOG2048|consen  494 STRGQIFVYNLETLESHLLKV--RLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEAR  550 (691)
T ss_pred             eccceEEEEEcccceeecchh--ccCcceeeeeccccccCcEEEEecCCeEEEEecchh
Confidence            689999999999887654442  2247899999995 5567888889999999999543

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=4.4e-32  Score=256.06  Aligned_cols=245  Identities=20%  Similarity=0.336  Sum_probs=195.8

Q ss_pred             eccCCCCcEEEEEecC-CCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCC
Q 001295          346 TLNQGSSPMSMDFHPV-QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  424 (1106)
Q Consensus       346 ~~~h~~~v~~~~~sp~-g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg  424 (1106)
                      +-+|++.|+.++|+|- |. +||+++.|+.|+||+...+.....+               ..+-.+|+..|+.++|+|.|
T Consensus        10 ~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~ck---------------~vld~~hkrsVRsvAwsp~g   73 (312)
T KOG0645|consen   10 LSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTCK---------------TVLDDGHKRSVRSVAWSPHG   73 (312)
T ss_pred             ecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEEE---------------EeccccchheeeeeeecCCC
Confidence            3459999999999998 77 7999999999999999853222111               11236899999999999999


Q ss_pred             CEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCC---ceeEEEeccC
Q 001295          425 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG---AKQYIFEGHE  501 (1106)
Q Consensus       425 ~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~h~  501 (1106)
                      ++||++|.|.++.||.-..++ .....+++||...|.|++|+++|.  +||+++.|++|-||.+..+   .++..+++|.
T Consensus        74 ~~La~aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL~~Ht  150 (312)
T KOG0645|consen   74 RYLASASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVLQEHT  150 (312)
T ss_pred             cEEEEeeccceEEEeecCCCc-eeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeeecccc
Confidence            999999999999999877654 456778999999999999999999  8999999999999998744   4678899999


Q ss_pred             CCeEEEeccccCCceEEEEEecCCeEEEEeCCCC---CceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCC
Q 001295          502 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL---GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK  578 (1106)
Q Consensus       502 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~  578 (1106)
                      ..|..+.|+|+.  .+|++++.|++|++|+-...   ....++.++...                     +.++.|++.|
T Consensus       151 qDVK~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~T---------------------VW~~~F~~~G  207 (312)
T KOG0645|consen  151 QDVKHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENT---------------------VWSLAFDNIG  207 (312)
T ss_pred             ccccEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccce---------------------EEEEEecCCC
Confidence            999999999987  58999999999999976521   233444555444                     4445555555


Q ss_pred             CEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEcc
Q 001295          579 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS  640 (1106)
Q Consensus       579 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~  640 (1106)
                      ..+++++.|++|+||-..+.     +. ..+...+..++|.  ...|++++.|+.|+++...
T Consensus       208 ~rl~s~sdD~tv~Iw~~~~~-----~~-~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s  261 (312)
T KOG0645|consen  208 SRLVSCSDDGTVSIWRLYTD-----LS-GMHSRALYDVPWD--NGVIASGGGDDAIRLFKES  261 (312)
T ss_pred             ceEEEecCCcceEeeeeccC-----cc-hhcccceEeeeec--ccceEeccCCCEEEEEEec
Confidence            57999999999999986532     11 1223457778887  5689999999999999654

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=9.7e-34  Score=307.03  Aligned_cols=274  Identities=15%  Similarity=0.209  Sum_probs=234.3

Q ss_pred             cccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecC
Q 001295          742 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  821 (1106)
Q Consensus       742 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~  821 (1106)
                      ....+++..|++|+..++.+..|..|++|.+...+..+                        ++   +..         +
T Consensus       377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~------------------------lk---~~~---------~  420 (707)
T KOG0263|consen  377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKK------------------------LK---DAS---------D  420 (707)
T ss_pred             cCCcceeEeecCCcchhhccccccEEEEEecchhhhcc------------------------cc---chh---------h
Confidence            44678999999999999999999999999875321100                        00   011         0


Q ss_pred             CCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEE
Q 001295          822 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL  900 (1106)
Q Consensus       822 ~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l  900 (1106)
                      ...+=+.+ |-.+.+.|-.+....+++.+|.++|..+.|+| +.++|+++++|++||+|.+.+..++-..+||..+|+.+
T Consensus       421 l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV  499 (707)
T KOG0263|consen  421 LSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDV  499 (707)
T ss_pred             hccccccccchhhhhccccCCceeEEeecCCCceeeeeecc-cccceeeccCCcceeeeecccceeEEEecCCCcceeeE
Confidence            11111222 33366667777777788999999999999999 99999999999999999999999999999999999999


Q ss_pred             EEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEecCCceEee
Q 001295          901 AFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVK  979 (1106)
Q Consensus       901 ~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d~~~~~~~~  979 (1106)
                      .|+|-|-++||+|.|++.++|..+..     ..+.++.||..   .|.|+.|+|++.|+++ +.|.+|++||+.+|..++
T Consensus       500 ~F~P~GyYFatas~D~tArLWs~d~~-----~PlRifaghls---DV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VR  571 (707)
T KOG0263|consen  500 QFAPRGYYFATASHDQTARLWSTDHN-----KPLRIFAGHLS---DVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVR  571 (707)
T ss_pred             EecCCceEEEecCCCceeeeeecccC-----Cchhhhccccc---ccceEEECCcccccccCCCCceEEEEEcCCCcEEE
Confidence            99999999999999999999999873     45777888875   8999999999999999 589999999999999999


Q ss_pred             ecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEe
Q 001295          980 QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL 1059 (1106)
Q Consensus       980 ~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~ 1059 (1106)
                      .|.  ||.++|++++|||+|++|++|++||.|.+||+.+++++..+.       +| .+.+.  ++.|+. ||..||+|+
T Consensus       572 iF~--GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~-------~H-t~ti~--SlsFS~-dg~vLasgg  638 (707)
T KOG0263|consen  572 IFT--GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLK-------GH-TGTIY--SLSFSR-DGNVLASGG  638 (707)
T ss_pred             Eec--CCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhh-------cc-cCcee--EEEEec-CCCEEEecC
Confidence            997  899999999999999999999999999999999999998887       55 44477  899998 799999999


Q ss_pred             CCCcEEEEeecCCC
Q 001295         1060 SDGGVHVFEPLESE 1073 (1106)
Q Consensus      1060 ~Dg~v~vW~~~~~~ 1073 (1106)
                      .|++|++||+..-.
T Consensus       639 ~DnsV~lWD~~~~~  652 (707)
T KOG0263|consen  639 ADNSVRLWDLTKVI  652 (707)
T ss_pred             CCCeEEEEEchhhc
Confidence            99999999997666

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=9.7e-33  Score=269.65  Aligned_cols=294  Identities=16%  Similarity=0.318  Sum_probs=246.5

Q ss_pred             ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEE
Q 001295          407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  486 (1106)
Q Consensus       407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw  486 (1106)
                      ++.+|.+.|.|+++.|-.++|++|+.|++|+|||+.+|+...   ++.||...|..+++|+-..  |+++++.|+.|+.|
T Consensus       146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKCw  220 (460)
T KOG0285|consen  146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKCW  220 (460)
T ss_pred             hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEEE
Confidence            589999999999999999999999999999999999998654   7899999999999999888  89999999999999


Q ss_pred             eCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeec
Q 001295          487 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  566 (1106)
Q Consensus       487 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  566 (1106)
                      |++..+.++.+.||-..|.+++.+|.-  ..|++|+.|.++++||+++...+..+.+|...|.++.+.|-..        
T Consensus       221 DLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dp--------  290 (460)
T KOG0285|consen  221 DLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDP--------  290 (460)
T ss_pred             echhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCC--------
Confidence            999999999999999999999998876  5899999999999999999999999999998888777765433        


Q ss_pred             cceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhh
Q 001295          567 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL  646 (1106)
Q Consensus       567 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  646 (1106)
                                   .+++|+.|++|++||+..|+...++..|..  .|.+++.+|....+|+++.| .|+-|++..+ ..+
T Consensus       291 -------------qvit~S~D~tvrlWDl~agkt~~tlt~hkk--svral~lhP~e~~fASas~d-nik~w~~p~g-~f~  353 (460)
T KOG0285|consen  291 -------------QVITGSHDSTVRLWDLRAGKTMITLTHHKK--SVRALCLHPKENLFASASPD-NIKQWKLPEG-EFL  353 (460)
T ss_pred             -------------ceEEecCCceEEEeeeccCceeEeeecccc--eeeEEecCCchhhhhccCCc-cceeccCCcc-chh
Confidence                         599999999999999999999999887744  79999999999999999886 6788888776 222


Q ss_pred             hhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCC
Q 001295          647 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL  726 (1106)
Q Consensus       647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~  726 (1106)
                      ..+.                                                                            
T Consensus       354 ~nls----------------------------------------------------------------------------  357 (460)
T KOG0285|consen  354 QNLS----------------------------------------------------------------------------  357 (460)
T ss_pred             hccc----------------------------------------------------------------------------
Confidence            2222                                                                            


Q ss_pred             CCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCC
Q 001295          727 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  806 (1106)
Q Consensus       727 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  806 (1106)
                                    +|...|.+++...|+ ++++|+++|.+..||+..+-....+....         .-|.        
T Consensus       358 --------------gh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~v---------qpGS--------  405 (460)
T KOG0285|consen  358 --------------GHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIV---------QPGS--------  405 (460)
T ss_pred             --------------cccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccc---------cCCc--------
Confidence                          366777888888777 47888889999999987543211111100         0011        


Q ss_pred             CCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCC
Q 001295          807 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT  840 (1106)
Q Consensus       807 ~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~  840 (1106)
                      ......|.+.+|...|..|++|. |.+|++|.-..
T Consensus       406 l~sEagI~as~fDktg~rlit~eadKtIk~~keDe  440 (460)
T KOG0285|consen  406 LESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE  440 (460)
T ss_pred             cccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence            12466799999999999999998 99999997543

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=100.00  E-value=6.7e-31  Score=268.27  Aligned_cols=436  Identities=17%  Similarity=0.237  Sum_probs=320.3

Q ss_pred             CCcceeeecc-CCCCcEEEEEecC--CCeEEEEE-eccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcC
Q 001295          339 LPKTVTRTLN-QGSSPMSMDFHPV--QQTLLLVG-TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVS  414 (1106)
Q Consensus       339 ~~~~~~~~~~-h~~~v~~~~~sp~--g~~llatg-~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~  414 (1106)
                      ..-..++.++ -...|+|++||+-  |.+|++.- +.+.-+.|||+..+.....                   .+.-+..
T Consensus       142 v~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~-------------------vk~sne~  202 (626)
T KOG2106|consen  142 VTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGP-------------------VKTSNEV  202 (626)
T ss_pred             ccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCc-------------------ceeccce
Confidence            3444556666 6689999999984  44433332 2345688999988766542                   3445668


Q ss_pred             eEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeecccc-CCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCce
Q 001295          415 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK  493 (1106)
Q Consensus       415 V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~-~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~  493 (1106)
                      |....|.|.+.-|+.....+.+.+|+.+++...+....++++. ..|.|++|.++|.   ++||..+|.|.||+..+.+.
T Consensus       203 v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd---viTgDS~G~i~Iw~~~~~~~  279 (626)
T KOG2106|consen  203 VFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD---VITGDSGGNILIWSKGTNRI  279 (626)
T ss_pred             EEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC---EEeecCCceEEEEeCCCceE
Confidence            9999999955555555456889999999998877666666543 5799999999998   89999999999999888887


Q ss_pred             eEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEe--eCCCCeeEEEEEec----------------
Q 001295          494 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY--EAPGRWCTTMAYSA----------------  555 (1106)
Q Consensus       494 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~s~----------------  555 (1106)
                      .+....|.+.|.+++...  +| .|++|+.|..|..|| ...+.+...  +...+.+..++-..                
T Consensus       280 ~k~~~aH~ggv~~L~~lr--~G-tllSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt  355 (626)
T KOG2106|consen  280 SKQVHAHDGGVFSLCMLR--DG-TLLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGT  355 (626)
T ss_pred             EeEeeecCCceEEEEEec--Cc-cEeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEee
Confidence            777779999999999644  43 577799999999999 333333322  22223333332111                


Q ss_pred             ---CCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCC
Q 001295          556 ---DGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN  632 (1106)
Q Consensus       556 ---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg  632 (1106)
                         .-..+..||.+ ..+.++.+|+.+++++++.|+.+++|+  ..+++.+....   .++.|+.|+|.| .++.|+..|
T Consensus       356 ~~~~f~~~v~gh~d-elwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~---d~~~~~~fhpsg-~va~Gt~~G  428 (626)
T KOG2106|consen  356 LENGFTLTVQGHGD-ELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIE---DPAECADFHPSG-VVAVGTATG  428 (626)
T ss_pred             ecCCceEEEEeccc-ceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEec---CceeEeeccCcc-eEEEeeccc
Confidence               11123344444 788899999999999999999999999  44555444332   357899999999 999999999


Q ss_pred             cEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccc
Q 001295          633 GIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITE  712 (1106)
Q Consensus       633 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  712 (1106)
                      ...+.|.++. ..+..-                                                               
T Consensus       429 ~w~V~d~e~~-~lv~~~---------------------------------------------------------------  444 (626)
T KOG2106|consen  429 RWFVLDTETQ-DLVTIH---------------------------------------------------------------  444 (626)
T ss_pred             eEEEEecccc-eeEEEE---------------------------------------------------------------
Confidence            9999998764 211100                                                               


Q ss_pred             cCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCcccc
Q 001295          713 ESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLW  792 (1106)
Q Consensus       713 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w  792 (1106)
                                                  ....+++.++|+|+|.+|++++.|+.|+||.++.+.                
T Consensus       445 ----------------------------~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g----------------  480 (626)
T KOG2106|consen  445 ----------------------------TDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANG----------------  480 (626)
T ss_pred             ----------------------------ecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCC----------------
Confidence                                        024678999999999999999999999999887422                


Q ss_pred             CCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeee------------------cCCCCC
Q 001295          793 QPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATF------------------MPPPPA  853 (1106)
Q Consensus       793 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~------------------~~~~~~  853 (1106)
                           +.....-  ..+..+|+.+.||+|++++.+-+ |-.|..|.....+.....                  -.+...
T Consensus       481 -----~~y~r~~--k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~  553 (626)
T KOG2106|consen  481 -----RKYSRVG--KCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTD  553 (626)
T ss_pred             -----cEEEEee--eecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCch
Confidence                 2111111  11458899999999999999998 888999954332221111                  124455


Q ss_pred             eeEEEEecCCCceEEEeeCCCcEEEEEeecce---EEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeC
Q 001295          854 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE---VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS  923 (1106)
Q Consensus       854 v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~---~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~  923 (1106)
                      |..++-+. +.+++|+|.+.|.|++|...-.+   ...++.+|++-|++++|.-+...|++.+.|..|..|++
T Consensus       554 i~a~~rs~-~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  554 INAVARSH-CEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL  625 (626)
T ss_pred             HHHhhhhh-hhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence            77777887 88999999999999999875432   34677899999999999998889998889999999986

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.3e-31  Score=252.93  Aligned_cols=293  Identities=16%  Similarity=0.231  Sum_probs=237.5

Q ss_pred             cccccceEEEEEcCC-CceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEE
Q 001295          740 NLRATKISRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL  818 (1106)
Q Consensus       740 ~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~  818 (1106)
                      .+|.+++..++++|- |..|++++.|..|++|+.....              -|.     +..  ....+|...|.+++|
T Consensus        11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~--------------s~~-----ck~--vld~~hkrsVRsvAw   69 (312)
T KOG0645|consen   11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD--------------SWT-----CKT--VLDDGHKRSVRSVAW   69 (312)
T ss_pred             cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC--------------cEE-----EEE--eccccchheeeeeee
Confidence            358889999999998 8889999999999999875210              011     111  111259999999999


Q ss_pred             ecCCCEEEEEe-CCeEEEEEcC--CCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeec---ceEEEEecC
Q 001295          819 SKNDSYVMSAS-GGKISLFNMM--TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---DEVKSKLKG  892 (1106)
Q Consensus       819 s~~~~~l~~~s-dg~i~vwd~~--~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~---~~~~~~l~~  892 (1106)
                      +|.|++|++++ |.++.||.-.  +.+++.++.+|..+|.+++||+ +|.+||+++.|.+|.||.+..   .++...|++
T Consensus        70 sp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~  148 (312)
T KOG0645|consen   70 SPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQE  148 (312)
T ss_pred             cCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeecc
Confidence            99999999999 9999999866  4678899999999999999999 999999999999999999985   468899999


Q ss_pred             cccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEe
Q 001295          893 HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFE  971 (1106)
Q Consensus       893 h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d  971 (1106)
                      |+..|..+.|+|...+|+|+|.|.+|++|+-..  .....+.+.+.+|..   .|.+++|++.|..|++ +.|++++||-
T Consensus       149 HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~--dddW~c~~tl~g~~~---TVW~~~F~~~G~rl~s~sdD~tv~Iw~  223 (312)
T KOG0645|consen  149 HTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDED--DDDWECVQTLDGHEN---TVWSLAFDNIGSRLVSCSDDGTVSIWR  223 (312)
T ss_pred             ccccccEEEEcCCcceeEEeccCCeEEEEeecC--CCCeeEEEEecCccc---eEEEEEecCCCceEEEecCCcceEeee
Confidence            999999999999999999999999999998774  223567788888864   8999999999988888 5889999998


Q ss_pred             cCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCC
Q 001295          972 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1051 (1106)
Q Consensus       972 ~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d 1051 (1106)
                      ..+     .+ ...|+.+++.+.|.  ...|++++.|+.|++|.-..+-.-..+.........|.. .|+  ++.|.|.-
T Consensus       224 ~~~-----~~-~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~-dVN--sV~w~p~~  292 (312)
T KOG0645|consen  224 LYT-----DL-SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEV-DVN--SVQWNPKV  292 (312)
T ss_pred             ecc-----Cc-chhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhccccc-ccc--eEEEcCCC
Confidence            652     12 23678999999998  568999999999999987643222222211112223333 577  89999955


Q ss_pred             CCEEEEEeCCCcEEEEeec
Q 001295         1052 PNEFALGLSDGGVHVFEPL 1070 (1106)
Q Consensus      1052 ~~~l~t~~~Dg~v~vW~~~ 1070 (1106)
                      .++|++|++||.|++|.+.
T Consensus       293 ~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  293 SNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             CCceeecCCCceEEEEEec
Confidence            7899999999999999875

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.4e-32  Score=250.80  Aligned_cols=252  Identities=18%  Similarity=0.249  Sum_probs=219.1

Q ss_pred             CCcceeeecc-CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEE
Q 001295          339 LPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR  417 (1106)
Q Consensus       339 ~~~~~~~~~~-h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~  417 (1106)
                      +|..-..++. |.++|.++.|+-||+| ..+++.|.+|++|+...|.++++                   +.+|...|..
T Consensus         5 ~ptkr~~~l~~~qgaV~avryN~dGnY-~ltcGsdrtvrLWNp~rg~likt-------------------YsghG~EVlD   64 (307)
T KOG0316|consen    5 LPTKRLSILDCAQGAVRAVRYNVDGNY-CLTCGSDRTVRLWNPLRGALIKT-------------------YSGHGHEVLD   64 (307)
T ss_pred             CcchhceeecccccceEEEEEccCCCE-EEEcCCCceEEeecccccceeee-------------------ecCCCceeee
Confidence            3454455555 9999999999999998 77778899999999999998874                   7999999999


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCC--CceeE
Q 001295          418 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN--GAKQY  495 (1106)
Q Consensus       418 l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~--~~~~~  495 (1106)
                      ++.+.|...+++|+.|+.|.+||+.+|+.++   .+.+|.+.|+.++|+.+..  .+++|+.|.++++||.++  .++++
T Consensus        65 ~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePiQ  139 (307)
T KOG0316|consen   65 AALSSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPIQ  139 (307)
T ss_pred             ccccccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCccc
Confidence            9999999999999999999999999999887   6899999999999999988  899999999999999885  57789


Q ss_pred             EEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEc
Q 001295          496 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD  575 (1106)
Q Consensus       496 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~  575 (1106)
                      .+......|.++.+..    ..|++|+.||++|.||++.+.....+-  ++                     ++++++|+
T Consensus       140 ildea~D~V~Si~v~~----heIvaGS~DGtvRtydiR~G~l~sDy~--g~---------------------pit~vs~s  192 (307)
T KOG0316|consen  140 ILDEAKDGVSSIDVAE----HEIVAGSVDGTVRTYDIRKGTLSSDYF--GH---------------------PITSVSFS  192 (307)
T ss_pred             hhhhhcCceeEEEecc----cEEEeeccCCcEEEEEeecceeehhhc--CC---------------------cceeEEec
Confidence            9998899999998632    579999999999999999765443332  23                     45555555


Q ss_pred             CCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295          576 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       576 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                      ++++..++++.|+++++.|-.+|+++..+++|.....=..++++.....+++|+.||.+++||+.+.
T Consensus       193 ~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~  259 (307)
T KOG0316|consen  193 KDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE  259 (307)
T ss_pred             CCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccc
Confidence            5556899999999999999999999999999987766677888888899999999999999999876

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=9.4e-33  Score=281.50  Aligned_cols=290  Identities=19%  Similarity=0.307  Sum_probs=249.6

Q ss_pred             ccCCCCcCeEEEEEcc-CCCEEEEEeCCCeEEEEEccC-CceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEE
Q 001295          407 LVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHG-GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK  484 (1106)
Q Consensus       407 ~~~~h~~~V~~l~~sp-dg~~las~~~d~~v~iwd~~~-~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~  484 (1106)
                      ++.||...|+++.|.| .+.+|++++.|+.|+||++-. +++++   ++.||..+|.+++|+++|.  .|+|+|.|+.|+
T Consensus       209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr---tf~gH~k~Vrd~~~s~~g~--~fLS~sfD~~lK  283 (503)
T KOG0282|consen  209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR---TFKGHRKPVRDASFNNCGT--SFLSASFDRFLK  283 (503)
T ss_pred             eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh---hhhcchhhhhhhhccccCC--eeeeeecceeee
Confidence            5899999999999999 999999999999999999987 55555   7999999999999999999  799999999999


Q ss_pred             EEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEee
Q 001295          485 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF  564 (1106)
Q Consensus       485 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~  564 (1106)
                      +||+++|+++..+. ....++|+.|+|++ .+.+++|+.|+.|+.||+++++.+..+..|-+.|..+.|-++|+      
T Consensus       284 lwDtETG~~~~~f~-~~~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~------  355 (503)
T KOG0282|consen  284 LWDTETGQVLSRFH-LDKVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGR------  355 (503)
T ss_pred             eeccccceEEEEEe-cCCCceeeecCCCC-CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCc------
Confidence            99999999999987 45678899998876 37999999999999999999999889999999888888888887      


Q ss_pred             eccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCch
Q 001295          565 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR  644 (1106)
Q Consensus       565 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~  644 (1106)
                                     ++++.++|++++||+...+-.+....... .....++..+|+++++++-+.|+.|.++.+....+
T Consensus       356 ---------------rFissSDdks~riWe~~~~v~ik~i~~~~-~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r  419 (503)
T KOG0282|consen  356 ---------------RFISSSDDKSVRIWENRIPVPIKNIADPE-MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR  419 (503)
T ss_pred             ---------------eEeeeccCccEEEEEcCCCccchhhcchh-hccCcceecCCCCCeehhhccCceEEEEecccccc
Confidence                           79999999999999998887766553222 23578899999999999999999999997644311


Q ss_pred             h--hhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEe
Q 001295          645 L--LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK  722 (1106)
Q Consensus       645 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~  722 (1106)
                      .  .+.+++|.                                                                     
T Consensus       420 ~nkkK~feGh~---------------------------------------------------------------------  430 (503)
T KOG0282|consen  420 LNKKKRFEGHS---------------------------------------------------------------------  430 (503)
T ss_pred             cCHhhhhccee---------------------------------------------------------------------
Confidence            1  11111110                                                                     


Q ss_pred             cCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCcccc
Q 001295          723 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN  802 (1106)
Q Consensus       723 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  802 (1106)
                                                                                                      
T Consensus       431 --------------------------------------------------------------------------------  430 (503)
T KOG0282|consen  431 --------------------------------------------------------------------------------  430 (503)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEE
Q 001295          803 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN  880 (1106)
Q Consensus       803 ~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd  880 (1106)
                            -.+--..+.|||||.+|++|+ ||.+.+||.++.+.+..+.+|.+.++.+.|+|.....+|+++.||.|++||
T Consensus       431 ------vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  431 ------VAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             ------ccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence                  122345688999999999998 899999999999999999999999999999998888999999999999996

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.2e-32  Score=274.29  Aligned_cols=284  Identities=17%  Similarity=0.269  Sum_probs=240.1

Q ss_pred             cccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecC
Q 001295          742 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  821 (1106)
Q Consensus       742 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~  821 (1106)
                      -...|..+.|.|+|+.|++++..|.+.+|+...-.+                       ...+  ..|...|+++.|+++
T Consensus        95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF-----------------------Etil--QaHDs~Vr~m~ws~~  149 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF-----------------------ETIL--QAHDSPVRTMKWSHN  149 (464)
T ss_pred             cccceeeEEEcCCCceeEeecccccEEEecCceeeH-----------------------HHHh--hhhcccceeEEEccC
Confidence            456789999999999999999999999997532111                       0011  239999999999999


Q ss_pred             CCEEEEEe-CCeEEEEEcCCCceeeeecCCC-CCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeE
Q 001295          822 DSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG  899 (1106)
Q Consensus       822 ~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~-~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~  899 (1106)
                      +.++++|+ +|.|++|+..- ..+..+.+|. ..|++++||| ....++++++||+|+|||....+.-..+.||.-.|.+
T Consensus       150 g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVks  227 (464)
T KOG0284|consen  150 GTWMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKS  227 (464)
T ss_pred             CCEEEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcce
Confidence            99999999 89999999764 3344555554 8899999999 6667889999999999999988888899999999999


Q ss_pred             EEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEecCCceEe
Q 001295          900 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECV  978 (1106)
Q Consensus       900 l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d~~~~~~~  978 (1106)
                      ++|+|...+|||+|.|..|++||.+++.     ++....+|..   .|..+.|++++.+|++ +.|..+++||+++.+.+
T Consensus       228 vdWHP~kgLiasgskDnlVKlWDprSg~-----cl~tlh~HKn---tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl  299 (464)
T KOG0284|consen  228 VDWHPTKGLIASGSKDNLVKLWDPRSGS-----CLATLHGHKN---TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKEL  299 (464)
T ss_pred             eccCCccceeEEccCCceeEeecCCCcc-----hhhhhhhccc---eEEEEEEcCCCCeeEEccCCceEEEEehhHhHHH
Confidence            9999999999999999999999999965     4666667664   8999999999999999 68999999999988888


Q ss_pred             eecccCCCCCCeeEEEECC-CCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEE
Q 001295          979 KQWVPRESSAPITHATFSC-DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1057 (1106)
Q Consensus       979 ~~~~~~~h~~~v~~l~~s~-d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t 1057 (1106)
                      ..+.  +|...|++++|+| ...+|.+|+.||.|..|.+...+.+..+      +.+| ...|+  +++|+| =|.+|++
T Consensus       300 ~~~r--~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i------~~AH-d~~iw--sl~~hP-lGhil~t  367 (464)
T KOG0284|consen  300 FTYR--GHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEI------PPAH-DGEIW--SLAYHP-LGHILAT  367 (464)
T ss_pred             HHhh--cchhhheeeccccccccceeeccCCCceEEEeccccccccCC------Cccc-cccee--eeeccc-cceeEee
Confidence            7776  8999999999999 4557889999999999999855555443      3454 44488  999999 5999999


Q ss_pred             EeCCCcEEEEeecCC
Q 001295         1058 GLSDGGVHVFEPLES 1072 (1106)
Q Consensus      1058 ~~~Dg~v~vW~~~~~ 1072 (1106)
                      |+.|.++++|.-...
T Consensus       368 gsnd~t~rfw~r~rp  382 (464)
T KOG0284|consen  368 GSNDRTVRFWTRNRP  382 (464)
T ss_pred             cCCCcceeeeccCCC
Confidence            999999999986543

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.3e-31  Score=301.80  Aligned_cols=289  Identities=27%  Similarity=0.422  Sum_probs=245.2

Q ss_pred             cccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecC
Q 001295          742 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  821 (1106)
Q Consensus       742 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~  821 (1106)
                      +...|.++.|+++|+.+++++.++.+++|+.....                +     .....+.  +|...|..++|+|+
T Consensus       158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~----------------~-----~~~~~l~--~h~~~v~~~~fs~d  214 (456)
T KOG0266|consen  158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIK----------------S-----NLLRELS--GHTRGVSDVAFSPD  214 (456)
T ss_pred             ccCceEEEEEcCCCCeEEEccCCCcEEEeeccccc----------------c-----hhhcccc--ccccceeeeEECCC
Confidence            46789999999999999999999999999864211                0     1111122  39999999999999


Q ss_pred             CCEEEEEe-CCeEEEEEc-CCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeE
Q 001295          822 DSYVMSAS-GGKISLFNM-MTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG  899 (1106)
Q Consensus       822 ~~~l~~~s-dg~i~vwd~-~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~  899 (1106)
                      ++++++++ |++|+|||+ ..+.+++++.+|...|++++|+| +++++++|+.|++|+|||+.+++++..+.+|.+.|++
T Consensus       215 ~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~  293 (456)
T KOG0266|consen  215 GSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISG  293 (456)
T ss_pred             CcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEE
Confidence            99999999 899999999 56689999999999999999999 7799999999999999999999999999999999999


Q ss_pred             EEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeEEEEecCCceEe
Q 001295          900 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECV  978 (1106)
Q Consensus       900 l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v~i~d~~~~~~~  978 (1106)
                      ++|++|+.+|++++.|+.|+|||+.++...   +.....++.... .+..+.|+|++++++++ .|+.+++||+..+.++
T Consensus       294 ~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~---~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~  369 (456)
T KOG0266|consen  294 LAFSPDGNLLVSASYDGTIRVWDLETGSKL---CLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV  369 (456)
T ss_pred             EEECCCCCEEEEcCCCccEEEEECCCCcee---eeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcce
Confidence            999999999999999999999999997643   344445554433 68999999999999995 7779999999999999


Q ss_pred             eecccCCCCC---CeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEE
Q 001295          979 KQWVPRESSA---PITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEF 1055 (1106)
Q Consensus       979 ~~~~~~~h~~---~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l 1055 (1106)
                      ..+.  +|..   .+.+..+++.+.++++|+.|+.|++||+.++..++++.       +|....+.  .+.++| ..+++
T Consensus       370 ~~~~--~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~-------~h~~~~~~--~~~~~~-~~~~~  437 (456)
T KOG0266|consen  370 GTYT--GHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLE-------GHSKAAVS--DLSSHP-TENLI  437 (456)
T ss_pred             eeec--ccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhc-------CCCCCcee--ccccCC-CcCee
Confidence            9887  5544   45566678899999999999999999999999888887       33222234  688888 57888


Q ss_pred             EEEe--CCCcEEEEeec
Q 001295         1056 ALGL--SDGGVHVFEPL 1070 (1106)
Q Consensus      1056 ~t~~--~Dg~v~vW~~~ 1070 (1106)
                      ++++  .|+.+++|...
T Consensus       438 ~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  438 ASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             eecCcCCCceEEEecCC
Confidence            8888  78999999864

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=5e-33  Score=270.18  Aligned_cols=232  Identities=21%  Similarity=0.363  Sum_probs=204.3

Q ss_pred             CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEE
Q 001295          349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  428 (1106)
Q Consensus       349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  428 (1106)
                      ..+.|.|+.+..+   .+++|..|++|+|||.++-+++.                   ++.||++.|.|+.|  |.+.|+
T Consensus       196 ~skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~-------------------~L~GHtGSVLCLqy--d~rvii  251 (499)
T KOG0281|consen  196 NSKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLK-------------------ILTGHTGSVLCLQY--DERVIV  251 (499)
T ss_pred             cCCceEEEEecch---hhhcccccCceEEeccccHHHHH-------------------hhhcCCCcEEeeec--cceEEE
Confidence            4578999998543   48999999999999999887766                   58999999999999  567999


Q ss_pred             EEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCce---eEEEeccCCCeE
Q 001295          429 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK---QYIFEGHEAPVY  505 (1106)
Q Consensus       429 s~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~h~~~v~  505 (1106)
                      +|+.|.+|+|||+++|+++.   ++-+|...|..+.|+..    +++|++.|.+|.+||+.+...   .+.+.||...|+
T Consensus       252 sGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN  324 (499)
T KOG0281|consen  252 SGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN  324 (499)
T ss_pred             ecCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence            99999999999999999887   68899999999999743    799999999999999987653   357889999999


Q ss_pred             EEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEE
Q 001295          506 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG  585 (1106)
Q Consensus       506 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  585 (1106)
                      .+.|.  .  +++++++.|.+|++|++.+.+.+.++.+|...|.++.+.                       +.++++|+
T Consensus       325 vVdfd--~--kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr-----------------------~rlvVSGS  377 (499)
T KOG0281|consen  325 VVDFD--D--KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR-----------------------DRLVVSGS  377 (499)
T ss_pred             eeccc--c--ceEEEecCCceEEEEeccceeeehhhhcccccceehhcc-----------------------CeEEEecC
Confidence            99863  2  599999999999999999999999999998877776542                       34789999


Q ss_pred             CCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295          586 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       586 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                      .|.+|++||+..|.+++.+++|+.  -|.|+.|  |.+.+++|..||+|++||+..+
T Consensus       378 SDntIRlwdi~~G~cLRvLeGHEe--LvRciRF--d~krIVSGaYDGkikvWdl~aa  430 (499)
T KOG0281|consen  378 SDNTIRLWDIECGACLRVLEGHEE--LVRCIRF--DNKRIVSGAYDGKIKVWDLQAA  430 (499)
T ss_pred             CCceEEEEeccccHHHHHHhchHH--hhhheee--cCceeeeccccceEEEEecccc
Confidence            999999999999999999998855  7999999  6689999999999999999876

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=4.1e-31  Score=299.76  Aligned_cols=257  Identities=21%  Similarity=0.371  Sum_probs=214.1

Q ss_pred             CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcc--eeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCE
Q 001295          349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE--RLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  426 (1106)
Q Consensus       349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~  426 (1106)
                      |...|.|+.|||+|++ +++++.|+.+++|+..+++  .+.                   .+.+|...|.+++|+|||++
T Consensus       158 ~~~sv~~~~fs~~g~~-l~~~~~~~~i~~~~~~~~~~~~~~-------------------~l~~h~~~v~~~~fs~d~~~  217 (456)
T KOG0266|consen  158 ECPSVTCVDFSPDGRA-LAAASSDGLIRIWKLEGIKSNLLR-------------------ELSGHTRGVSDVAFSPDGSY  217 (456)
T ss_pred             ccCceEEEEEcCCCCe-EEEccCCCcEEEeecccccchhhc-------------------cccccccceeeeEECCCCcE
Confidence            5899999999999996 9999999999999997666  222                   35899999999999999999


Q ss_pred             EEEEeCCCeEEEEEcc-CCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeE
Q 001295          427 FGVAYSRHIVQIYSYH-GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY  505 (1106)
Q Consensus       427 las~~~d~~v~iwd~~-~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~  505 (1106)
                      +++++.|++|+|||+. .+..++   ++.+|...|++++|+|+++  ++++|+.|++|+|||+++++++..+.+|.+.|+
T Consensus       218 l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is  292 (456)
T KOG0266|consen  218 LLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS  292 (456)
T ss_pred             EEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence            9999999999999994 444444   7889999999999999996  899999999999999999999999999999999


Q ss_pred             EEeccccCCceEEEEEecCCeEEEEeCCCCCc--eeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEE
Q 001295          506 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA  583 (1106)
Q Consensus       506 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  583 (1106)
                      +++|.  +++++|++++.|+.|++||+.++..  ...+..+...                  . .+..+.|+|++.++++
T Consensus       293 ~~~f~--~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~------------------~-~~~~~~fsp~~~~ll~  351 (456)
T KOG0266|consen  293 GLAFS--PDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENS------------------A-PVTSVQFSPNGKYLLS  351 (456)
T ss_pred             EEEEC--CCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCC------------------C-ceeEEEECCCCcEEEE
Confidence            99975  4558999999999999999998773  2333332222                  0 3445555566669999


Q ss_pred             EECCCeEEEEECCCcceeEEEccCCCC-CCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhccc
Q 001295          584 AGDDFSIKFWDMDSVQLLTSIDADGGL-PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL  652 (1106)
Q Consensus       584 ~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  652 (1106)
                      +..|+.+++||+..+.....+.++... ..+.+..+++.+.++++|+.|+.|.+|+..++ ..+..+.+|
T Consensus       352 ~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~-~~~~~l~~h  420 (456)
T KOG0266|consen  352 ASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG-GILQRLEGH  420 (456)
T ss_pred             ecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc-chhhhhcCC
Confidence            999999999999999999999877653 23445556789999999999999999999886 555555443

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=1.6e-32  Score=266.77  Aligned_cols=273  Identities=21%  Similarity=0.317  Sum_probs=229.6

Q ss_pred             ccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCC
Q 001295          456 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL  535 (1106)
Q Consensus       456 h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  535 (1106)
                      ....|+|+.+. |+   .+++|..|++|+|||..+-.+++.+.||++.|.|+.+.    ...+++|+.|.+|++||+.++
T Consensus       196 ~skgVYClQYD-D~---kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd----~rviisGSSDsTvrvWDv~tg  267 (499)
T KOG0281|consen  196 NSKGVYCLQYD-DE---KIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD----ERVIVSGSSDSTVRVWDVNTG  267 (499)
T ss_pred             cCCceEEEEec-ch---hhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc----ceEEEecCCCceEEEEeccCC
Confidence            34579999984 33   58999999999999999999999999999999999863    269999999999999999999


Q ss_pred             CceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcce---eEEEccCCCCCC
Q 001295          536 GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL---LTSIDADGGLPA  612 (1106)
Q Consensus       536 ~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~  612 (1106)
                      +.+.++-.|...|..+.|+..                       ++++++.|.++.+||+.....   .+.+.+|  ...
T Consensus       268 e~l~tlihHceaVLhlrf~ng-----------------------~mvtcSkDrsiaVWdm~sps~it~rrVLvGH--rAa  322 (499)
T KOG0281|consen  268 EPLNTLIHHCEAVLHLRFSNG-----------------------YMVTCSKDRSIAVWDMASPTDITLRRVLVGH--RAA  322 (499)
T ss_pred             chhhHHhhhcceeEEEEEeCC-----------------------EEEEecCCceeEEEeccCchHHHHHHHHhhh--hhh
Confidence            999999999998888888653                       699999999999999987542   2334444  557


Q ss_pred             cCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccc
Q 001295          613 SPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVS  692 (1106)
Q Consensus       613 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  692 (1106)
                      |+.+.|+  .+++++++.|.+|++|++.++ +.++.+.+                                         
T Consensus       323 VNvVdfd--~kyIVsASgDRTikvW~~st~-efvRtl~g-----------------------------------------  358 (499)
T KOG0281|consen  323 VNVVDFD--DKYIVSASGDRTIKVWSTSTC-EFVRTLNG-----------------------------------------  358 (499)
T ss_pred             eeeeccc--cceEEEecCCceEEEEeccce-eeehhhhc-----------------------------------------
Confidence            8888885  569999999999999998877 44444433                                         


Q ss_pred             cCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeec
Q 001295          693 IPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKW  772 (1106)
Q Consensus       693 ~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~  772 (1106)
                                                                                                      
T Consensus       359 --------------------------------------------------------------------------------  358 (499)
T KOG0281|consen  359 --------------------------------------------------------------------------------  358 (499)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCC
Q 001295          773 QRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP  851 (1106)
Q Consensus       773 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~  851 (1106)
                                                          |...|.|+.+  .++++++|+ |.+|++||+..|.+++.+++|.
T Consensus       359 ------------------------------------HkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHE  400 (499)
T KOG0281|consen  359 ------------------------------------HKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHE  400 (499)
T ss_pred             ------------------------------------ccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchH
Confidence                                                4444444444  678899998 9999999999999999999999


Q ss_pred             CCeeEEEEecCCCceEEEeeCCCcEEEEEeecce---------EEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEe
Q 001295          852 PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE---------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS  922 (1106)
Q Consensus       852 ~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~---------~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd  922 (1106)
                      .-|.|+.|   |.+.+++|..||+|+|||+.++.         ++..+..|++.|..+.|  |...+++++.|.+|.|||
T Consensus       401 eLvRciRF---d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWd  475 (499)
T KOG0281|consen  401 ELVRCIRF---DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWD  475 (499)
T ss_pred             Hhhhheee---cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEE
Confidence            99999999   56789999999999999998753         45566779999999999  678999999999999999


Q ss_pred             CCCccc
Q 001295          923 SDGWEK  928 (1106)
Q Consensus       923 ~~~~~~  928 (1106)
                      +..+..
T Consensus       476 Fl~~~~  481 (499)
T KOG0281|consen  476 FLNGPP  481 (499)
T ss_pred             cCCCCc
Confidence            987543

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.98  E-value=9.2e-30  Score=266.03  Aligned_cols=623  Identities=15%  Similarity=0.197  Sum_probs=345.9

Q ss_pred             ceeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEc
Q 001295          342 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  421 (1106)
Q Consensus       342 ~~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s  421 (1106)
                      .+..+-.|++.|+.+.|||-...||||++.|..|+||.+..|-...             ..-....+.+..-.|.|+.|+
T Consensus        71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~-------------LSape~~~g~~~~~vE~l~fH  137 (1012)
T KOG1445|consen   71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQK-------------LSAPEIDVGGGNVIVECLRFH  137 (1012)
T ss_pred             ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccc-------------cCCcceeecCCceEEEEeecc
Confidence            3444445999999999999888899999999999999998543221             001112355566689999999


Q ss_pred             cCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCC-CCceeEEEecc
Q 001295          422 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQYIFEGH  500 (1106)
Q Consensus       422 pdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~h  500 (1106)
                      |...-|...+..|+++|||+.+++.+.   .+.+|...|.+..|+.||+  ++++.+.|+.|+|||.+ .++.++..++|
T Consensus       138 pTaDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~H  212 (1012)
T KOG1445|consen  138 PTADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEGH  212 (1012)
T ss_pred             cCcCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCcccccccc
Confidence            955555555678999999999987654   6889999999999999999  89999999999999987 57888888988


Q ss_pred             CCCe-EEEeccccCCceEEEEEecC----CeEEEEeCCCCCcee-EeeCC-CCeeEEEEEecCCCeEE-EeeeccceeEE
Q 001295          501 EAPV-YSVCPHHKENIQFIFSTALD----GKIKAWLYDNLGSRV-DYEAP-GRWCTTMAYSADGTRTY-QGFRKRSLGVV  572 (1106)
Q Consensus       501 ~~~v-~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~-~~~~~-~~~v~~~~~s~~~~~~~-~~~~~~~i~~~  572 (1106)
                      .+.- ..+.|.  ++-..|++.+.+    ..|++||.+...... ++... .-.|.--.|.||.+.++ .|.....+.++
T Consensus       213 ~~~rdsRv~w~--Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~l  290 (1012)
T KOG1445|consen  213 GGMRDSRVLWA--GNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFML  290 (1012)
T ss_pred             ccchhheeeec--cchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEE
Confidence            7642 233443  333467776654    579999998754332 22221 11233345566665443 33334455555


Q ss_pred             EEcCCCCEEEEEE--------------CCCeE--------EEEECCCcceeEEE---------ccC--------------
Q 001295          573 QFDTTKNRFLAAG--------------DDFSI--------KFWDMDSVQLLTSI---------DAD--------------  607 (1106)
Q Consensus       573 ~~~~~~~~l~~~~--------------~d~~i--------~iwd~~~~~~~~~~---------~~~--------------  607 (1106)
                      .+.+...+|.-+-              ....+        +++.+.....+...         ..|              
T Consensus       291 E~~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~  370 (1012)
T KOG1445|consen  291 EMQDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPGC  370 (1012)
T ss_pred             EecCCCcchhhhhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCccCc
Confidence            5554443322100              00011        12222111111000         000              


Q ss_pred             -------CCCCCcCeEEEccCCC-------------EEE-EEeC---------------CCcEE--EEEcc------CCc
Q 001295          608 -------GGLPASPRIRFNKDGC-------------LLA-VSTN---------------DNGIK--ILATS------DGI  643 (1106)
Q Consensus       608 -------~~~~~v~~v~~s~~~~-------------~l~-~~~~---------------dg~i~--iwd~~------~~~  643 (1106)
                             +....+..++..|..+             ..+ +++.               .+.+-  +=|..      ++ 
T Consensus       371 ~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~~~-  449 (1012)
T KOG1445|consen  371 TAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVPKK-  449 (1012)
T ss_pred             CccceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcCcc-
Confidence                   0001111222222100             000 0000               00000  00000      00 


Q ss_pred             hhhhhhc---------------------ccccccccCCCCCCCCcCchhhhHh-----hhhcccccccccccccccCCCC
Q 001295          644 RLLRTFE---------------------NLAYDASRTSENSKPTISPISAAAA-----AAATSAGLADRAASMVSIPGMN  697 (1106)
Q Consensus       644 ~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  697 (1106)
                      ...+.+.                     +.+..+......+.....+.+....     ...+.+... ++.|-..-..+.
T Consensus       450 ~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~-ksvPe~~~~~~g  528 (1012)
T KOG1445|consen  450 EEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFG-KSVPEQPPVNFG  528 (1012)
T ss_pred             hhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCcccccccccccccCcccc-ccCCCCCCcccC
Confidence            0000000                     0000000000000000000000000     000000000 000000000000


Q ss_pred             CCccccCCCCccccccC------CCceeeEecCCCCCCcc------ceecccCccccccceEEEEEcCCCceEE--Eeec
Q 001295          698 GDVRSLADVKPRITEES------NDKSKVWKLTELSEPNQ------CRSLRLPENLRATKISRLIFTNSGNAIL--ALAS  763 (1106)
Q Consensus       698 ~~~~~~~~~~~l~~~~~------d~~i~vw~~~~~~~~~~------~~~~~~~~~~~~~~i~~~~~s~~~~~l~--~~~~  763 (1106)
                      ..  .........+.+.      -|.+.-|.--.+....+      ++.+...   -.+.-.  -|+.+...++  ..+.
T Consensus       529 ~~--~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~---~PgEsn--Gfcan~~rvAVPL~g~  601 (1012)
T KOG1445|consen  529 KP--ISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTR---LPGESN--GFCANNKRVAVPLAGS  601 (1012)
T ss_pred             CC--ccccccccccccccccceeeccchheeeccCccccchhhhhhhhccccc---CCCccC--ceeeccceEEEEecCC
Confidence            00  0000000001000      01111111111111100      0100000   011111  2333333333  3455


Q ss_pred             CceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEec-CCCEEEEEe-CCeEEEEEcCCC
Q 001295          764 NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSYVMSAS-GGKISLFNMMTF  841 (1106)
Q Consensus       764 dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~s-dg~i~vwd~~~~  841 (1106)
                      .|.|-||+++....-+++.                     +.+......|+.+.|+| |...||+++ ||.|++|.+..+
T Consensus       602 gG~iai~el~~PGrLPDgv---------------------~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~  660 (1012)
T KOG1445|consen  602 GGVIAIYELNEPGRLPDGV---------------------MPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTAN  660 (1012)
T ss_pred             CceEEEEEcCCCCCCCccc---------------------ccccccCceeeecccCCCChHHeeecccCceEEEEEeccC
Confidence            7899999988644433332                     33334677899999998 667888888 799999998754


Q ss_pred             c-------eeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcC
Q 001295          842 K-------TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA  914 (1106)
Q Consensus       842 ~-------~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~  914 (1106)
                      .       .-..+..|...|+++.|+|-...+||+++.|-+|++||+.+++....|.+|++.|.+++|||||+.+|+.+.
T Consensus       661 gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcK  740 (1012)
T KOG1445|consen  661 GLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCK  740 (1012)
T ss_pred             CCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeec
Confidence            3       234577899999999999977889999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-Ee----CCeEEEEecCCceE--eeecccCCCC
Q 001295          915 DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VH----ETQLAIFETTKLEC--VKQWVPRESS  987 (1106)
Q Consensus       915 Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~----d~~v~i~d~~~~~~--~~~~~~~~h~  987 (1106)
                      ||+|+||+-.+++.    .  +.++..+....-..+.|.-||+++++ +.    +++|.+||..+...  +.+...+- .
T Consensus       741 Dg~~rVy~Prs~e~----p--v~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDv-a  813 (1012)
T KOG1445|consen  741 DGTLRVYEPRSREQ----P--VYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDV-A  813 (1012)
T ss_pred             CceEEEeCCCCCCC----c--cccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecc-c
Confidence            99999999887553    1  22233222244567899999999988 44    45799999876542  22211111 1


Q ss_pred             CCeeEEEECCCCCE-EEEEEcCCeEEEEEcCCcee
Q 001295          988 APITHATFSCDSQL-VYACFLDATVCVFSAANLKL 1021 (1106)
Q Consensus       988 ~~v~~l~~s~d~~~-l~t~s~Dg~i~vwd~~~~~~ 1021 (1106)
                      ..+.--.+.+|... +++|-.|..|.+|.+...+.
T Consensus       814 ps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esP  848 (1012)
T KOG1445|consen  814 PSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESP  848 (1012)
T ss_pred             CccccccccCCCceEEEecCCCceEEEEEecCCCc
Confidence            12223345566665 67888899999999865443

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.98  E-value=6.4e-32  Score=275.45  Aligned_cols=266  Identities=17%  Similarity=0.254  Sum_probs=218.1

Q ss_pred             CCCcceeeecc-CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCC-cceeEEeeeeeeccCcCCccccccccCCCCcCe
Q 001295          338 DLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGS-RERLVLRNFKVWDLGACSMPLQAALVKDPGVSV  415 (1106)
Q Consensus       338 ~~~~~~~~~~~-h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V  415 (1106)
                      .+|+.+..++. |+..|+++.|.|-.-+||++|+.|+.|+||++.. ++++.                   ++.+|..+|
T Consensus       201 ~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr-------------------tf~gH~k~V  261 (503)
T KOG0282|consen  201 YLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR-------------------TFKGHRKPV  261 (503)
T ss_pred             eccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh-------------------hhhcchhhh
Confidence            45777777776 9999999999995555899999999999999977 66655                   489999999


Q ss_pred             EEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeE
Q 001295          416 NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY  495 (1106)
Q Consensus       416 ~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~  495 (1106)
                      ..++|+++|..+.++|.|+.|++||+++|+++..+.    -...++|+.|.||+.+ .|++|+.|+.|+.||+++++.++
T Consensus       262 rd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~----~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvvq  336 (503)
T KOG0282|consen  262 RDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH----LDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVVQ  336 (503)
T ss_pred             hhhhccccCCeeeeeecceeeeeeccccceEEEEEe----cCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHHH
Confidence            999999999999999999999999999999876432    2457899999999965 79999999999999999999999


Q ss_pred             EEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEc
Q 001295          496 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD  575 (1106)
Q Consensus       496 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~  575 (1106)
                      .+..|-+.|..+.|.+  ++..+++.+.|+++++|+.+....+.....+.                    .....++..+
T Consensus       337 eYd~hLg~i~~i~F~~--~g~rFissSDdks~riWe~~~~v~ik~i~~~~--------------------~hsmP~~~~~  394 (503)
T KOG0282|consen  337 EYDRHLGAILDITFVD--EGRRFISSSDDKSVRIWENRIPVPIKNIADPE--------------------MHTMPCLTLH  394 (503)
T ss_pred             HHHhhhhheeeeEEcc--CCceEeeeccCccEEEEEcCCCccchhhcchh--------------------hccCcceecC
Confidence            9999999999999854  45899999999999999998755443221111                    1144556677


Q ss_pred             CCCCEEEEEECCCeEEEEECCCc---ceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhc
Q 001295          576 TTKNRFLAAGDDFSIKFWDMDSV---QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE  650 (1106)
Q Consensus       576 ~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  650 (1106)
                      |+++++++-+.|+.|.++.+...   .....+.+|.-.+.-..+.|||||.+|++|+.||.+.+||.++- +.+..+.
T Consensus       395 P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~-kl~~~lk  471 (503)
T KOG0282|consen  395 PNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTT-KLVSKLK  471 (503)
T ss_pred             CCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhh-hhhhccc
Confidence            77779999999999999986532   23345566655556678999999999999999999999999876 4554443

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=2.1e-30  Score=239.04  Aligned_cols=287  Identities=17%  Similarity=0.266  Sum_probs=234.5

Q ss_pred             ccccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEE
Q 001295          405 AALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK  484 (1106)
Q Consensus       405 ~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~  484 (1106)
                      ..++..|+++|.++.|+-||+|.++++.|++|++|+...|.+++   ++.+|...|..++.+.|+.  .|++|+.|+.|.
T Consensus        10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~   84 (307)
T KOG0316|consen   10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQ   84 (307)
T ss_pred             ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEE
Confidence            34688999999999999999999999999999999999998877   7899999999999999998  699999999999


Q ss_pred             EEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCC--CceeEeeCCCCeeEEEEEecCCCeEEE
Q 001295          485 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL--GSRVDYEAPGRWCTTMAYSADGTRTYQ  562 (1106)
Q Consensus       485 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~~~~  562 (1106)
                      +||+.+|+.++.|.+|.+.|+.+.|+..  ...+++|+.|.++++||.++.  ++++.+......|.++....       
T Consensus        85 vwDV~TGkv~Rr~rgH~aqVNtV~fNee--sSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~-------  155 (307)
T KOG0316|consen   85 VWDVNTGKVDRRFRGHLAQVNTVRFNEE--SSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE-------  155 (307)
T ss_pred             EEEcccCeeeeecccccceeeEEEecCc--ceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc-------
Confidence            9999999999999999999999998644  479999999999999999864  34455555555666655543       


Q ss_pred             eeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295          563 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       563 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                                      ..+++|+.||++|.||++.|+.....-++    +|++++|++|++..+.++-|+++++.|-.+|
T Consensus       156 ----------------heIvaGS~DGtvRtydiR~G~l~sDy~g~----pit~vs~s~d~nc~La~~l~stlrLlDk~tG  215 (307)
T KOG0316|consen  156 ----------------HEIVAGSVDGTVRTYDIRKGTLSSDYFGH----PITSVSFSKDGNCSLASSLDSTLRLLDKETG  215 (307)
T ss_pred             ----------------cEEEeeccCCcEEEEEeecceeehhhcCC----cceeEEecCCCCEEEEeeccceeeecccchh
Confidence                            25899999999999999999877665533    7999999999999999999999999999999


Q ss_pred             chhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEe
Q 001295          643 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK  722 (1106)
Q Consensus       643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~  722 (1106)
                       ++++...+|...-.                                                                 
T Consensus       216 -klL~sYkGhkn~ey-----------------------------------------------------------------  229 (307)
T KOG0316|consen  216 -KLLKSYKGHKNMEY-----------------------------------------------------------------  229 (307)
T ss_pred             -HHHHHhccccccee-----------------------------------------------------------------
Confidence             88888888765311                                                                 


Q ss_pred             cCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCcccc
Q 001295          723 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN  802 (1106)
Q Consensus       723 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  802 (1106)
                                             -...+++.....++++++||.+++||+....                      .+..
T Consensus       230 -----------------------kldc~l~qsdthV~sgSEDG~Vy~wdLvd~~----------------------~~sk  264 (307)
T KOG0316|consen  230 -----------------------KLDCCLNQSDTHVFSGSEDGKVYFWDLVDET----------------------QISK  264 (307)
T ss_pred             -----------------------eeeeeecccceeEEeccCCceEEEEEeccce----------------------eeee
Confidence                                   1234555566678888889999988875321                      1111


Q ss_pred             ccCCCCCCCC-eeEEEEecCCCEEEEEeCCeEEEEEcC
Q 001295          803 DVTDSNPEEA-VPCFALSKNDSYVMSASGGKISLFNMM  839 (1106)
Q Consensus       803 ~~~~~~~~~~-v~~l~~s~~~~~l~~~sdg~i~vwd~~  839 (1106)
                       +.  .+... +..+.+.|.-..++++.++.+..|.-+
T Consensus       265 -~~--~~~~v~v~dl~~hp~~~~f~~A~~~~~~~~~~~  299 (307)
T KOG0316|consen  265 -LS--VVSTVIVTDLSCHPTMDDFITATGHGDLFWYQE  299 (307)
T ss_pred             -ec--cCCceeEEeeecccCccceeEecCCceeceeeh
Confidence             11  13334 788999999888888888777777643

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=6.4e-31  Score=253.01  Aligned_cols=292  Identities=19%  Similarity=0.279  Sum_probs=238.6

Q ss_pred             ccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEec
Q 001295          741 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK  820 (1106)
Q Consensus       741 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~  820 (1106)
                      +....+.+..|+|||+++++++-||.|.+|+..+++...+-+..+.         .. ++       -+...|.|++||.
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAq---------d~-fM-------Mmd~aVlci~FSR  273 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQ---------DN-FM-------MMDDAVLCISFSR  273 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhh---------cc-ee-------ecccceEEEeecc
Confidence            3566788999999999999999999999999876654333222211         11 11       1688999999999


Q ss_pred             CCCEEEEEe-CCeEEEEEcCCCceeeeec-CCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCee
Q 001295          821 NDSYVMSAS-GGKISLFNMMTFKTMATFM-PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT  898 (1106)
Q Consensus       821 ~~~~l~~~s-dg~i~vwd~~~~~~~~~~~-~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~  898 (1106)
                      |...+|+|+ ||.|++|.+.+|.|++.|. .|...|+|+.||. |+..+.+++.|.+++|.-+++|++++.++||++.|+
T Consensus       274 DsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn  352 (508)
T KOG0275|consen  274 DSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVN  352 (508)
T ss_pred             cHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCcccccc
Confidence            999999999 9999999999999999987 8999999999999 888899999999999999999999999999999999


Q ss_pred             EEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCC-CcEEEE-EeCCeEEEEecCCce
Q 001295          899 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-QIHFLV-VHETQLAIFETTKLE  976 (1106)
Q Consensus       899 ~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~d-g~~l~~-~~d~~v~i~d~~~~~  976 (1106)
                      ...|++||..+++++.||+|+||+.++.++.     ..+.... ....|..+..-|- -..+++ ...++|.|.++. |+
T Consensus       353 ~a~ft~dG~~iisaSsDgtvkvW~~KtteC~-----~Tfk~~~-~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQ  425 (508)
T KOG0275|consen  353 EATFTDDGHHIISASSDGTVKVWHGKTTECL-----STFKPLG-TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQ  425 (508)
T ss_pred             ceEEcCCCCeEEEecCCccEEEecCcchhhh-----hhccCCC-CcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ce
Confidence            9999999999999999999999999997653     3322211 1235666666554 445555 477889999885 77


Q ss_pred             EeeecccCC-CCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEE
Q 001295          977 CVKQWVPRE-SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEF 1055 (1106)
Q Consensus       977 ~~~~~~~~~-h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l 1055 (1106)
                      .++.+..+. ..+...+.+.||.|.++++.++|+.++.|.+.+|++...+..+...          ++.++.+|. .+.+
T Consensus       426 vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkd----------vIGl~HHPH-qNll  494 (508)
T KOG0275|consen  426 VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKD----------VIGLTHHPH-QNLL  494 (508)
T ss_pred             EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccccc----------ccccccCcc-cchh
Confidence            888876432 2456777889999999999999999999999999999887733222          336889994 7899


Q ss_pred             EEEeCCCcEEEEe
Q 001295         1056 ALGLSDGGVHVFE 1068 (1106)
Q Consensus      1056 ~t~~~Dg~v~vW~ 1068 (1106)
                      ++-+.||.+++|.
T Consensus       495 AsYsEDgllKLWk  507 (508)
T KOG0275|consen  495 ASYSEDGLLKLWK  507 (508)
T ss_pred             hhhcccchhhhcC
Confidence            9999999999996

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=7.5e-31  Score=244.03  Aligned_cols=287  Identities=16%  Similarity=0.280  Sum_probs=226.6

Q ss_pred             ccCCCCcCeEEEEEcc---CCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcE
Q 001295          407 LVKDPGVSVNRVIWSP---DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI  483 (1106)
Q Consensus       407 ~~~~h~~~V~~l~~sp---dg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i  483 (1106)
                      +..||+.+|..++|||   +|-+|++++.|+.-.+-+-++|..+.   +|.||.+.|++.....+..  ..++++.|-+.
T Consensus         9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwig---tfeghkgavw~~~l~~na~--~aasaaadfta   83 (334)
T KOG0278|consen    9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIG---TFEGHKGAVWSATLNKNAT--RAASAAADFTA   83 (334)
T ss_pred             EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEE---eeeccCcceeeeecCchhh--hhhhhcccchh
Confidence            4689999999999997   89999999999998888888988777   7999999999999988877  68999999999


Q ss_pred             EEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCce-eEeeCCCCeeEEEEEecCCCeEEE
Q 001295          484 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR-VDYEAPGRWCTTMAYSADGTRTYQ  562 (1106)
Q Consensus       484 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~~~~  562 (1106)
                      +|||.-+|..+++|. |..-|.+++|+.  |.++|++|+.++.+|+||++..+.. ..+.+|.+.|..+.|         
T Consensus        84 kvw~a~tgdelhsf~-hkhivk~~af~~--ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~w---------  151 (334)
T KOG0278|consen   84 KVWDAVTGDELHSFE-HKHIVKAVAFSQ--DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLW---------  151 (334)
T ss_pred             hhhhhhhhhhhhhhh-hhheeeeEEecc--cchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEE---------
Confidence            999999999999997 899999999854  4478999999999999999865433 344444444443333         


Q ss_pred             eeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295          563 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       563 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                                                                              ....+.+++.+.|++||+||.+++
T Consensus       152 --------------------------------------------------------c~eD~~iLSSadd~tVRLWD~rTg  175 (334)
T KOG0278|consen  152 --------------------------------------------------------CHEDKCILSSADDKTVRLWDHRTG  175 (334)
T ss_pred             --------------------------------------------------------eccCceEEeeccCCceEEEEeccC
Confidence                                                                    333334444455555555555544


Q ss_pred             chhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEe
Q 001295          643 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK  722 (1106)
Q Consensus       643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~  722 (1106)
                      . .++.+                                                                         
T Consensus       176 t-~v~sL-------------------------------------------------------------------------  181 (334)
T KOG0278|consen  176 T-EVQSL-------------------------------------------------------------------------  181 (334)
T ss_pred             c-EEEEE-------------------------------------------------------------------------
Confidence            1 00000                                                                         


Q ss_pred             cCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCcccc
Q 001295          723 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN  802 (1106)
Q Consensus       723 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  802 (1106)
                                                                                                      
T Consensus       182 --------------------------------------------------------------------------------  181 (334)
T KOG0278|consen  182 --------------------------------------------------------------------------------  181 (334)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEee
Q 001295          803 DVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR  882 (1106)
Q Consensus       803 ~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~  882 (1106)
                           .....|+++.++++|++|.++..+.|.+||..+...++.+.. ...|.+..++| +..++++|++|+.++.||..
T Consensus       182 -----~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P-~k~~fVaGged~~~~kfDy~  254 (334)
T KOG0278|consen  182 -----EFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKM-PCNVESASLHP-KKEFFVAGGEDFKVYKFDYN  254 (334)
T ss_pred             -----ecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccC-ccccccccccC-CCceEEecCcceEEEEEecc
Confidence                 023345566666666666666667777888777777776663 44689999999 77899999999999999999


Q ss_pred             cceEEEEe-cCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcc
Q 001295          883 VDEVKSKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE  927 (1106)
Q Consensus       883 ~~~~~~~l-~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~  927 (1106)
                      +|..+..+ ++|.++|.||.|+|||...++||.||+|++|.+..++
T Consensus       255 TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~  300 (334)
T KOG0278|consen  255 TGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK  300 (334)
T ss_pred             CCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence            99999886 9999999999999999999999999999999987654

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=8.3e-29  Score=270.08  Aligned_cols=285  Identities=28%  Similarity=0.485  Sum_probs=241.6

Q ss_pred             eeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEe
Q 001295          452 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL  531 (1106)
Q Consensus       452 ~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd  531 (1106)
                      ++.+|.++|.+++|+|+++  ++++++.|+.|++||+.+++....+..|...+..+.|.+..  +.+++++.||.|++||
T Consensus         4 ~~~~h~~~i~~~~~~~~~~--~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~~~~i~i~~   79 (289)
T cd00200           4 TLKGHTGGVTCVAFSPDGK--LLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG--TYLASGSSDKTIRLWD   79 (289)
T ss_pred             HhcccCCCEEEEEEcCCCC--EEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCC--CEEEEEcCCCeEEEEE
Confidence            4678999999999999998  89999999999999999998889999999999899886544  6899999999999999


Q ss_pred             CCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCC
Q 001295          532 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP  611 (1106)
Q Consensus       532 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  611 (1106)
                      +...+....+..+...+.++.|++++.                     ++++++.++.|++||+.+++....+..+  ..
T Consensus        80 ~~~~~~~~~~~~~~~~i~~~~~~~~~~---------------------~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~  136 (289)
T cd00200          80 LETGECVRTLTGHTSYVSSVAFSPDGR---------------------ILSSSSRDKTIKVWDVETGKCLTTLRGH--TD  136 (289)
T ss_pred             cCcccceEEEeccCCcEEEEEEcCCCC---------------------EEEEecCCCeEEEEECCCcEEEEEeccC--CC
Confidence            998766666666666666666666543                     6777777999999999988888888755  44


Q ss_pred             CcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhccccccccccccc
Q 001295          612 ASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMV  691 (1106)
Q Consensus       612 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  691 (1106)
                      .+.+++|+|++.++++++.++.+++||+.++ +....+                                          
T Consensus       137 ~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~~~------------------------------------------  173 (289)
T cd00200         137 WVNSVAFSPDGTFVASSSQDGTIKLWDLRTG-KCVATL------------------------------------------  173 (289)
T ss_pred             cEEEEEEcCcCCEEEEEcCCCcEEEEEcccc-ccceeE------------------------------------------
Confidence            7999999999999999888999999998644 110000                                          


Q ss_pred             ccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEee
Q 001295          692 SIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWK  771 (1106)
Q Consensus       692 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~  771 (1106)
                                                                                                      
T Consensus       174 --------------------------------------------------------------------------------  173 (289)
T cd00200         174 --------------------------------------------------------------------------------  173 (289)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCC
Q 001295          772 WQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP  850 (1106)
Q Consensus       772 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~  850 (1106)
                                                       .  .|...+.+++++|+++.+++++ ++.|++||+.+++.+..+..|
T Consensus       174 ---------------------------------~--~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~  218 (289)
T cd00200         174 ---------------------------------T--GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGH  218 (289)
T ss_pred             ---------------------------------e--cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhc
Confidence                                             0  0455677888888888787777 889999999888888888788


Q ss_pred             CCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEe
Q 001295          851 PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS  922 (1106)
Q Consensus       851 ~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd  922 (1106)
                      ...+.+++|++ ++.++++++.||.|++|++.+++.+..+.+|...|.+++|++++.+|++++.|+.|++|+
T Consensus       219 ~~~i~~~~~~~-~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         219 ENGVNSVAFSP-DGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             CCceEEEEEcC-CCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            88999999999 788999888899999999999999999999999999999999999999999999999996

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=1.1e-28  Score=269.27  Aligned_cols=245  Identities=27%  Similarity=0.433  Sum_probs=209.5

Q ss_pred             cCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEE
Q 001295          348 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF  427 (1106)
Q Consensus       348 ~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l  427 (1106)
                      +|.+.|++++|+|++++ +++|+.||.|.+|++.+++...                   .+..|...+..+.|+|++++|
T Consensus         7 ~h~~~i~~~~~~~~~~~-l~~~~~~g~i~i~~~~~~~~~~-------------------~~~~~~~~i~~~~~~~~~~~l   66 (289)
T cd00200           7 GHTGGVTCVAFSPDGKL-LATGSGDGTIKVWDLETGELLR-------------------TLKGHTGPVRDVAASADGTYL   66 (289)
T ss_pred             ccCCCEEEEEEcCCCCE-EEEeecCcEEEEEEeeCCCcEE-------------------EEecCCcceeEEEECCCCCEE
Confidence            59999999999999995 8889999999999998876544                   257888899999999999999


Q ss_pred             EEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEE
Q 001295          428 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV  507 (1106)
Q Consensus       428 as~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  507 (1106)
                      ++++.|+.|++||+.+++.+.   .+..|...|.++.|+++++  ++++++.|+.|++||+.+++....+..|...+.++
T Consensus        67 ~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~  141 (289)
T cd00200          67 ASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSV  141 (289)
T ss_pred             EEEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEE
Confidence            999999999999999876554   5678988999999999977  78888889999999999999999999999999999


Q ss_pred             eccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECC
Q 001295          508 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD  587 (1106)
Q Consensus       508 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  587 (1106)
                      +|++.  +.++++++.|+.|++||++..+....+..+...+.++.|++++                     +.+++++.+
T Consensus       142 ~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~---------------------~~l~~~~~~  198 (289)
T cd00200         142 AFSPD--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDG---------------------EKLLSSSSD  198 (289)
T ss_pred             EEcCc--CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCc---------------------CEEEEecCC
Confidence            98765  4678888889999999998777666666555555555555555                     468888889


Q ss_pred             CeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295          588 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       588 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                      +.|++||+.+++.+..+..+  ...+.++.|++++.++++++.+|.+++|+..++
T Consensus       199 ~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~  251 (289)
T cd00200         199 GTIKLWDLSTGKCLGTLRGH--ENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG  251 (289)
T ss_pred             CcEEEEECCCCceecchhhc--CCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc
Confidence            99999999998888887655  337899999999999999888999999998764

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=8.6e-30  Score=239.77  Aligned_cols=295  Identities=18%  Similarity=0.288  Sum_probs=229.2

Q ss_pred             ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEE
Q 001295          407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  486 (1106)
Q Consensus       407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw  486 (1106)
                      .+.||+.+++.+.++.+|.+|.+|+.|.++.||-...|+.+.   ++.||.+.|+|++...+.+  .+++|+.|.++++|
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW   79 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW   79 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence            478999999999999999999999999999999998888776   7999999999999999999  89999999999999


Q ss_pred             eCCCCceeEEEeccCCCeEEEeccccCCceEEEEEec-----CCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEE
Q 001295          487 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-----DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY  561 (1106)
Q Consensus       487 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~  561 (1106)
                      |+++|+++..++ ...+|..+.|++..  ++++.+..     .+.|.++|++....                        
T Consensus        80 Dv~tGk~la~~k-~~~~Vk~~~F~~~g--n~~l~~tD~~mg~~~~v~~fdi~~~~~------------------------  132 (327)
T KOG0643|consen   80 DVETGKQLATWK-TNSPVKRVDFSFGG--NLILASTDKQMGYTCFVSVFDIRDDSS------------------------  132 (327)
T ss_pred             EcCCCcEEEEee-cCCeeEEEeeccCC--cEEEEEehhhcCcceEEEEEEccCChh------------------------
Confidence            999999999988 56788888886554  34443332     23344444432100                        


Q ss_pred             EeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccC
Q 001295          562 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD  641 (1106)
Q Consensus       562 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~  641 (1106)
                                                      ++...++...+..+.  ..++.+-|.|-+++|++|..||.|.+||+++
T Consensus       133 --------------------------------~~~s~ep~~kI~t~~--skit~a~Wg~l~~~ii~Ghe~G~is~~da~~  178 (327)
T KOG0643|consen  133 --------------------------------DIDSEEPYLKIPTPD--SKITSALWGPLGETIIAGHEDGSISIYDART  178 (327)
T ss_pred             --------------------------------hhcccCceEEecCCc--cceeeeeecccCCEEEEecCCCcEEEEEccc
Confidence                                            111344455554443  4688899999999999999999999999988


Q ss_pred             CchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeE
Q 001295          642 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW  721 (1106)
Q Consensus       642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw  721 (1106)
                      +.+.+...                                                                        
T Consensus       179 g~~~v~s~------------------------------------------------------------------------  186 (327)
T KOG0643|consen  179 GKELVDSD------------------------------------------------------------------------  186 (327)
T ss_pred             Cceeeech------------------------------------------------------------------------
Confidence            73221110                                                                        


Q ss_pred             ecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccc
Q 001295          722 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT  801 (1106)
Q Consensus       722 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~  801 (1106)
                                                                                                      
T Consensus       187 --------------------------------------------------------------------------------  186 (327)
T KOG0643|consen  187 --------------------------------------------------------------------------------  186 (327)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCC-cE---
Q 001295          802 NDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS-SI---  876 (1106)
Q Consensus       802 ~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg-~v---  876 (1106)
                           ..|...|+.+.+++|..++++++ |.+-++||..+.++++++. -..+|++.+++|.....+..|+.+- .|   
T Consensus       187 -----~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT  260 (327)
T KOG0643|consen  187 -----EEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTT  260 (327)
T ss_pred             -----hhhccccccccccCCcceEEecccCccceeeeccceeeEEEee-ecccccceecccccceEEecCCceeeeeeee
Confidence                 01667788888899999999998 8899999999999999987 4557999999995444554444432 11   


Q ss_pred             ---------EEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCC
Q 001295          877 ---------QIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG  925 (1106)
Q Consensus       877 ---------~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~  925 (1106)
                               +.|++-..+.+..+++|-++|++|+|+|||+..+||++||.|++.-++.
T Consensus       261 ~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  261 STRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             cccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence                     2222223345677899999999999999999999999999999987765

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=1.7e-28  Score=301.29  Aligned_cols=252  Identities=14%  Similarity=0.181  Sum_probs=201.3

Q ss_pred             ccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc-CCC
Q 001295          347 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGS  425 (1106)
Q Consensus       347 ~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~  425 (1106)
                      ..|.+.|++++|+|+|++ +|+|+.|+.|+|||..+......           ........+. +...|.+++|+| ++.
T Consensus       480 ~~~~~~V~~i~fs~dg~~-latgg~D~~I~iwd~~~~~~~~~-----------~~~~~~~~~~-~~~~v~~l~~~~~~~~  546 (793)
T PLN00181        480 LNSSNLVCAIGFDRDGEF-FATAGVNKKIKIFECESIIKDGR-----------DIHYPVVELA-SRSKLSGICWNSYIKS  546 (793)
T ss_pred             cCCCCcEEEEEECCCCCE-EEEEeCCCEEEEEECCccccccc-----------ccccceEEec-ccCceeeEEeccCCCC
Confidence            448999999999999995 99999999999999864211000           0000000122 345899999998 588


Q ss_pred             EEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcC-CCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCe
Q 001295          426 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV  504 (1106)
Q Consensus       426 ~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v  504 (1106)
                      +||+++.||+|+|||+.+++.+.   .+.+|.+.|++++|+| ++.  +|++|+.|++|++||+.++..+..+..+ ..|
T Consensus       547 ~las~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v  620 (793)
T PLN00181        547 QVASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-ANI  620 (793)
T ss_pred             EEEEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CCe
Confidence            99999999999999999887654   6789999999999997 666  8999999999999999999999888855 678


Q ss_pred             EEEeccccCCceEEEEEecCCeEEEEeCCCCC-ceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEE
Q 001295          505 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA  583 (1106)
Q Consensus       505 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  583 (1106)
                      .++.|.+ +++.+|++|+.||.|++||+++.. ....+..|...|.++.|. ++                     .++++
T Consensus       621 ~~v~~~~-~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~---------------------~~lvs  677 (793)
T PLN00181        621 CCVQFPS-ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DS---------------------STLVS  677 (793)
T ss_pred             EEEEEeC-CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CC---------------------CEEEE
Confidence            8898853 456899999999999999998755 344566676677777664 23                     36999


Q ss_pred             EECCCeEEEEECCCc------ceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295          584 AGDDFSIKFWDMDSV------QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       584 ~~~d~~i~iwd~~~~------~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                      ++.|+.|++||+..+      ..+..+.+|  ...+.+++|++++.+|++|+.|+.|++|+....
T Consensus       678 ~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh--~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~  740 (793)
T PLN00181        678 SSTDNTLKLWDLSMSISGINETPLHSFMGH--TNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP  740 (793)
T ss_pred             EECCCEEEEEeCCCCccccCCcceEEEcCC--CCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence            999999999999743      566777766  446889999999999999999999999997654

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=1.2e-28  Score=302.70  Aligned_cols=321  Identities=12%  Similarity=0.155  Sum_probs=240.7

Q ss_pred             CCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCC
Q 001295          715 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQP  794 (1106)
Q Consensus       715 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~  794 (1106)
                      +|-+++|+............-.+  ..|...|.+++|+|+++++++++.|+.|+||++......  +.            
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~--~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~--~~------------  520 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDL--LNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKD--GR------------  520 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccc--cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccc--cc------------
Confidence            45566666654332111111111  237889999999999999999999999999997531100  00            


Q ss_pred             CCCCccccccCCCCCCCCeeEEEEecC-CCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeC
Q 001295          795 PSGIMMTNDVTDSNPEEAVPCFALSKN-DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD  872 (1106)
Q Consensus       795 ~~~~~~~~~~~~~~~~~~v~~l~~s~~-~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~  872 (1106)
                       ........+   .+...+.+++|++. +.+|++++ ||+|++||+.+++.+..+.+|...|++++|+|.++.+|++|+.
T Consensus       521 -~~~~~~~~~---~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~  596 (793)
T PLN00181        521 -DIHYPVVEL---ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSD  596 (793)
T ss_pred             -ccccceEEe---cccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcC
Confidence             000000001   13567899999874 77899988 9999999999999999999999999999999757899999999


Q ss_pred             CCcEEEEEeecceEEEEecCcccCeeEEEEe-cCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEE
Q 001295          873 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFS-HALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ  951 (1106)
Q Consensus       873 dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s-~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  951 (1106)
                      ||.|++||+.++..+..+..| ..|.++.|+ +++.+|++|+.||+|++||+.+.+.    .+....+|.   ..|..+.
T Consensus       597 Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~----~~~~~~~h~---~~V~~v~  668 (793)
T PLN00181        597 DGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL----PLCTMIGHS---KTVSYVR  668 (793)
T ss_pred             CCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc----cceEecCCC---CCEEEEE
Confidence            999999999999988888765 579999995 5799999999999999999987432    222334554   3789999


Q ss_pred             EcCCCcEEEE-EeCCeEEEEecCCc------eEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEe
Q 001295          952 FHQDQIHFLV-VHETQLAIFETTKL------ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCR 1024 (1106)
Q Consensus       952 ~s~dg~~l~~-~~d~~v~i~d~~~~------~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~ 1024 (1106)
                      |. ++.+|++ +.|+.|++||+...      ..+..+.  +|...+.+++|++++.+|++|+.|++|++|+......+..
T Consensus       669 f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~--gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s  745 (793)
T PLN00181        669 FV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFM--GHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLS  745 (793)
T ss_pred             Ee-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEc--CCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEE
Confidence            97 5666766 68999999999753      4555554  8899999999999999999999999999999877654433


Q ss_pred             eCCCcc--c---CCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEee
Q 001295         1025 INPSAY--L---PAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1069 (1106)
Q Consensus      1025 ~~~~~~--~---~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~ 1069 (1106)
                      +.....  .   ...++...|.  .++|+| ++..|++|+.||.|+||++
T Consensus       746 ~~~~~~~~~~~~~~~~~~~~V~--~v~ws~-~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        746 YKFKTIDPVSGLEVDDASQFIS--SVCWRG-QSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             EecccCCcccccccCCCCcEEE--EEEEcC-CCCeEEEecCCCcEEEEec
Confidence            221110  0   0011123355  899999 7899999999999999986

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=6.8e-28  Score=220.59  Aligned_cols=276  Identities=17%  Similarity=0.251  Sum_probs=213.0

Q ss_pred             cceeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCcc-ccccccCCCCcCeEEEE
Q 001295          341 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMP-LQAALVKDPGVSVNRVI  419 (1106)
Q Consensus       341 ~~~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~-~~~~~~~~h~~~V~~l~  419 (1106)
                      ...+.++.....|.+++|+|.|. |.|+|+..++.+|..+..-..+...    .+.. ..++ ..-..-+.|.+.|+|.+
T Consensus        23 f~~i~~l~dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~----hea~-~~pp~v~~kr~khhkgsiyc~~   96 (350)
T KOG0641|consen   23 FEAINILEDSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHA----HEAA-KQPPSVLCKRNKHHKGSIYCTA   96 (350)
T ss_pred             eEEEEEecchhheeeEEecCCCc-eEEeccCCceEEEEccccccCcccc----cccc-cCCCeEEeeeccccCccEEEEE
Confidence            34566777889999999999999 7999999999999876542222100    0000 0111 11123468999999999


Q ss_pred             EccCCCEEEEEeCCCeEEEEEcc--CCceeeeeeeeccccCCeeEEEEcCC---CCceEEEEec-CCCcEEEEeCCCCce
Q 001295          420 WSPDGSLFGVAYSRHIVQIYSYH--GGDEVRQHLEIDAHVGGVNDIAFSHP---NKQLCVITCG-DDKTIKVWDATNGAK  493 (1106)
Q Consensus       420 ~spdg~~las~~~d~~v~iwd~~--~~~~~~~~~~l~~h~~~V~~~~~s~d---~~~~~l~s~~-~d~~i~iwd~~~~~~  493 (1106)
                      |||+|++||+|+.|++|++.-.+  +......-.++.-|.+.|..++|..+   +.. +|++++ .|+.|++-|..+|+.
T Consensus        97 ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~  175 (350)
T KOG0641|consen   97 WSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQG  175 (350)
T ss_pred             ecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCc
Confidence            99999999999999999987554  33333344467889999999999754   222 566655 588999999999999


Q ss_pred             eEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEE
Q 001295          494 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  573 (1106)
Q Consensus       494 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~  573 (1106)
                      .+.+.||++.|.++-   +-++.++++|+.|.+|++||++-...+..+...              +--.|.....+..++
T Consensus       176 ~~a~sghtghilaly---swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~--------------~~~~glessavaav~  238 (350)
T KOG0641|consen  176 FHALSGHTGHILALY---SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDND--------------FHDGGLESSAVAAVA  238 (350)
T ss_pred             ceeecCCcccEEEEE---EecCcEEEccCCCceEEEEeeeccceeeeccCc--------------ccCCCcccceeEEEE
Confidence            999999999999885   345579999999999999999865554433211              111223344677788


Q ss_pred             EcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295          574 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       574 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                      +.|.|+.|++|-.|....+||++.++.++.+..|  ...|.|+.|+|...|+++++.|..|++-|+...
T Consensus       239 vdpsgrll~sg~~dssc~lydirg~r~iq~f~ph--sadir~vrfsp~a~yllt~syd~~ikltdlqgd  305 (350)
T KOG0641|consen  239 VDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPH--SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD  305 (350)
T ss_pred             ECCCcceeeeccCCCceEEEEeeCCceeeeeCCC--ccceeEEEeCCCceEEEEecccceEEEeecccc
Confidence            8888889999999999999999999999999766  558999999999999999999999999998654

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=8.8e-29  Score=244.70  Aligned_cols=316  Identities=14%  Similarity=0.233  Sum_probs=242.0

Q ss_pred             CcceeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEE
Q 001295          340 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI  419 (1106)
Q Consensus       340 ~~~~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~  419 (1106)
                      +.+-...+-|.+.|.++...  +++ +.+|++||.++|||.. |+...                   ++.||.++|..++
T Consensus        95 aP~pl~~~~hdDWVSsv~~~--~~~-IltgsYDg~~riWd~~-Gk~~~-------------------~~~Ght~~ik~v~  151 (423)
T KOG0313|consen   95 APKPLQCFLHDDWVSSVKGA--SKW-ILTGSYDGTSRIWDLK-GKSIK-------------------TIVGHTGPIKSVA  151 (423)
T ss_pred             CCCccccccchhhhhhhccc--Cce-EEEeecCCeeEEEecC-CceEE-------------------EEecCCcceeeeE
Confidence            55566778899999999998  665 8999999999999987 44444                   3789999999888


Q ss_pred             EccCC---CEEEEEeCCCeEEEEEccCCcee-eeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeE
Q 001295          420 WSPDG---SLFGVAYSRHIVQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY  495 (1106)
Q Consensus       420 ~spdg---~~las~~~d~~v~iwd~~~~~~~-~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~  495 (1106)
                      |--..   ..|++++.|.++++|.++.++.. .....-.||...|.++...++|.  .+++|+.|.+|.||+..+ ....
T Consensus       152 ~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~-~~~~  228 (423)
T KOG0313|consen  152 WVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVET-DEED  228 (423)
T ss_pred             EEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCC-Cccc
Confidence            86533   35999999999999999877643 22223459999999999999999  899999999999999332 2222


Q ss_pred             EEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEc
Q 001295          496 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD  575 (1106)
Q Consensus       496 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~  575 (1106)
                      .+......       ...+...      ++     ...++.++..+.+|..+|.++.|++.+                  
T Consensus       229 ~~E~~s~~-------rrk~~~~------~~-----~~~~r~P~vtl~GHt~~Vs~V~w~d~~------------------  272 (423)
T KOG0313|consen  229 ELESSSNR-------RRKKQKR------EK-----EGGTRTPLVTLEGHTEPVSSVVWSDAT------------------  272 (423)
T ss_pred             cccccchh-------hhhhhhh------hh-----cccccCceEEecccccceeeEEEcCCC------------------
Confidence            22211110       0000000      00     112345666778888888888888755                  


Q ss_pred             CCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccc
Q 001295          576 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYD  655 (1106)
Q Consensus       576 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  655 (1106)
                          .+++++-|.+|+.||+.++..+..+....   .++++.++|..++|++|+.|..|++||.+++..           
T Consensus       273 ----v~yS~SwDHTIk~WDletg~~~~~~~~~k---sl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~g-----------  334 (423)
T KOG0313|consen  273 ----VIYSVSWDHTIKVWDLETGGLKSTLTTNK---SLNCISYSPLSKLLASGSSDRHIRLWDPRTGDG-----------  334 (423)
T ss_pred             ----ceEeecccceEEEEEeecccceeeeecCc---ceeEeecccccceeeecCCCCceeecCCCCCCC-----------
Confidence                38999999999999999999998887653   489999999999999999999999999876610           


Q ss_pred             cccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceec
Q 001295          656 ASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSL  735 (1106)
Q Consensus       656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~  735 (1106)
                                                                                   .                  
T Consensus       335 -------------------------------------------------------------s------------------  335 (423)
T KOG0313|consen  335 -------------------------------------------------------------S------------------  335 (423)
T ss_pred             -------------------------------------------------------------c------------------
Confidence                                                                         0                  


Q ss_pred             ccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeE
Q 001295          736 RLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC  815 (1106)
Q Consensus       736 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~  815 (1106)
                                +...                                                     .+  .+|.+.|.+
T Consensus       336 ----------~v~~-----------------------------------------------------s~--~gH~nwVss  350 (423)
T KOG0313|consen  336 ----------VVSQ-----------------------------------------------------SL--IGHKNWVSS  350 (423)
T ss_pred             ----------eeEE-----------------------------------------------------ee--ecchhhhhh
Confidence                      0000                                                     01  128888899


Q ss_pred             EEEecCCC-EEEEEe-CCeEEEEEcCCCc-eeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEe
Q 001295          816 FALSKNDS-YVMSAS-GGKISLFNMMTFK-TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV  881 (1106)
Q Consensus       816 l~~s~~~~-~l~~~s-dg~i~vwd~~~~~-~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~  881 (1106)
                      +.++|... .|++++ |+++++||+++.+ .+..+.+|...|.++.|.  ++.+|++|+.|.+|+|+.-
T Consensus       351 vkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~--~~~~IvSGGaD~~l~i~~~  417 (423)
T KOG0313|consen  351 VKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN--EGGLIVSGGADNKLRIFKG  417 (423)
T ss_pred             eecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc--CCceEEeccCcceEEEecc
Confidence            99998665 566777 9999999999877 899999999999999998  5779999999999999864

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=1.7e-29  Score=234.98  Aligned_cols=298  Identities=17%  Similarity=0.282  Sum_probs=251.9

Q ss_pred             cccccceEEEEEcC---CCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEE
Q 001295          740 NLRATKISRLIFTN---SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF  816 (1106)
Q Consensus       740 ~~~~~~i~~~~~s~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l  816 (1106)
                      .+|..+|-.++|+|   +|-+|++++.|+.-.+                      .+-.+|..+.. +.  +|.+.|.+.
T Consensus        11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pml----------------------r~g~tgdwigt-fe--ghkgavw~~   65 (334)
T KOG0278|consen   11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPML----------------------RNGDTGDWIGT-FE--GHKGAVWSA   65 (334)
T ss_pred             cCCCcceeEEeccCCCCCceEEEEeccCCCchh----------------------ccCCCCCcEEe-ee--ccCcceeee
Confidence            67999999999974   8989999999976543                      33445655543 33  399999999


Q ss_pred             EEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecc-eEEEEecCcc
Q 001295          817 ALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKLKGHS  894 (1106)
Q Consensus       817 ~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~-~~~~~l~~h~  894 (1106)
                      +++.+....++++ |-+-+|||.-+|..+..|. |..-|.+++|+. |.++|++|+.+..+||||++.. .....+.+|.
T Consensus        66 ~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~ght  143 (334)
T KOG0278|consen   66 TLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHT  143 (334)
T ss_pred             ecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhcCCC
Confidence            9999988888888 8899999999999999987 888899999999 9999999999999999999874 3567889999


Q ss_pred             cCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCC
Q 001295          895 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTK  974 (1106)
Q Consensus       895 ~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~  974 (1106)
                      +.|..+.|....+.++|++.|++||+||..++.....  +.+.       ..|.++-+++||++|.++..+.|.+||..+
T Consensus       144 g~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~s--L~~~-------s~VtSlEvs~dG~ilTia~gssV~Fwdaks  214 (334)
T KOG0278|consen  144 GGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQS--LEFN-------SPVTSLEVSQDGRILTIAYGSSVKFWDAKS  214 (334)
T ss_pred             CcceeEEEeccCceEEeeccCCceEEEEeccCcEEEE--EecC-------CCCcceeeccCCCEEEEecCceeEEecccc
Confidence            9999999999889999999999999999999765332  2221       368999999999999999999999999999


Q ss_pred             ceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCE
Q 001295          975 LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNE 1054 (1106)
Q Consensus       975 ~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~ 1054 (1106)
                      ...++.+..   ...|.+..+.|+...+++|++|..++.||+.+|+.+..+.      .||.+. |.  ++.|+| ||..
T Consensus       215 f~~lKs~k~---P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n------kgh~gp-Vh--cVrFSP-dGE~  281 (334)
T KOG0278|consen  215 FGLLKSYKM---PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN------KGHFGP-VH--CVRFSP-DGEL  281 (334)
T ss_pred             ccceeeccC---ccccccccccCCCceEEecCcceEEEEEeccCCceeeecc------cCCCCc-eE--EEEECC-CCce
Confidence            999888764   5589999999999999999999999999999999987753      233333 66  899999 7999


Q ss_pred             EEEEeCCCcEEEEeecCCC--CccCCCCCCCCCC
Q 001295         1055 FALGLSDGGVHVFEPLESE--GKWGVPPPVDNGS 1086 (1106)
Q Consensus      1055 l~t~~~Dg~v~vW~~~~~~--~~~~~~~~~~~~~ 1086 (1106)
                      .++|+.||+|++|...-++  +.|.-..|-+.|.
T Consensus       282 yAsGSEDGTirlWQt~~~~~~~~~~~~~~ed~~e  315 (334)
T KOG0278|consen  282 YASGSEDGTIRLWQTTPGKTYGLWKCVKPEDDGE  315 (334)
T ss_pred             eeccCCCceEEEEEecCCCchhhccccChhhhcc
Confidence            9999999999999998877  5666666664443

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=2.3e-27  Score=222.89  Aligned_cols=276  Identities=16%  Similarity=0.248  Sum_probs=229.9

Q ss_pred             eeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeE--EEeccCCCeEEEeccccCCceEEEEEecCCeEEE
Q 001295          452 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY--IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA  529 (1106)
Q Consensus       452 ~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i  529 (1106)
                      .+++|...|.+++|+-+|.  .+++|+.|+++.+|+++..+...  ...+|.+.|..++|++... ..+++++.|.+|++
T Consensus        15 ~~~~~~~~v~Sv~wn~~g~--~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~-d~~atas~dk~ir~   91 (313)
T KOG1407|consen   15 ELQGHVQKVHSVAWNCDGT--KLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHP-DLFATASGDKTIRI   91 (313)
T ss_pred             HhhhhhhcceEEEEcccCc--eeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCC-cceEEecCCceEEE
Confidence            4678999999999999999  79999999999999998876554  3568999999999987655 68999999999999


Q ss_pred             EeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCC
Q 001295          530 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG  609 (1106)
Q Consensus       530 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  609 (1106)
                      ||++..++..........+                      .+.|+|+|++++.++.|..|.+.|.++.+.....+..  
T Consensus        92 wd~r~~k~~~~i~~~~eni----------------------~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~--  147 (313)
T KOG1407|consen   92 WDIRSGKCTARIETKGENI----------------------NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFK--  147 (313)
T ss_pred             EEeccCcEEEEeeccCcce----------------------EEEEcCCCCEEEEecCcccEEEEEecccceeehhccc--
Confidence            9999887776555443322                      2456667779999999999999999988877766543  


Q ss_pred             CCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhccccccccccc
Q 001295          610 LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAAS  689 (1106)
Q Consensus       610 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  689 (1106)
                       ..++-++|+-++.+++.....|.|.|.....- +.+..+                                        
T Consensus       148 -~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsL-kpv~si----------------------------------------  185 (313)
T KOG1407|consen  148 -FEVNEISWNNSNDLFFLTNGLGCVEILSYPSL-KPVQSI----------------------------------------  185 (313)
T ss_pred             -ceeeeeeecCCCCEEEEecCCceEEEEecccc-cccccc----------------------------------------
Confidence             34777899988888887777788887754322 111100                                        


Q ss_pred             ccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEE
Q 001295          690 MVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL  769 (1106)
Q Consensus       690 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i  769 (1106)
                                                                                                      
T Consensus       186 --------------------------------------------------------------------------------  185 (313)
T KOG1407|consen  186 --------------------------------------------------------------------------------  185 (313)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeec
Q 001295          770 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM  848 (1106)
Q Consensus       770 w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~  848 (1106)
                                                         +  .|.....||.|+|+|+++|+|+ |-.+.+||++..-+.+.+.
T Consensus       186 -----------------------------------~--AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~is  228 (313)
T KOG1407|consen  186 -----------------------------------K--AHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCIS  228 (313)
T ss_pred             -----------------------------------c--cCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeec
Confidence                                               0  1777788899999999999999 8999999999999999999


Q ss_pred             CCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCC
Q 001295          849 PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD  915 (1106)
Q Consensus       849 ~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D  915 (1106)
                      .+.-+|+.+.||. ||++||+|++|..|-|=++++|..+..++ +.++...|+|+|...+||.++.|
T Consensus       229 RldwpVRTlSFS~-dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  229 RLDWPVRTLSFSH-DGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             cccCceEEEEecc-CcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence            9999999999999 99999999999999999999999888886 78889999999999999988776

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.7e-27  Score=242.48  Aligned_cols=286  Identities=17%  Similarity=0.270  Sum_probs=236.4

Q ss_pred             cccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecC
Q 001295          742 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  821 (1106)
Q Consensus       742 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~  821 (1106)
                      ....|.+++|+|...+=++.+..-.+.||+..+.                      ..... +.  .....+.++.|-.|
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~----------------------~~~k~-~s--rFk~~v~s~~fR~D   79 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTR----------------------SVRKT-FS--RFKDVVYSVDFRSD   79 (487)
T ss_pred             ccCcceeEecCCCCCCceEEecccEEEEEecchh----------------------hhhhh-HH--hhccceeEEEeecC
Confidence            4578999999997766555555566777765421                      11110 11  15778999999999


Q ss_pred             CCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEE
Q 001295          822 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL  900 (1106)
Q Consensus       822 ~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l  900 (1106)
                      |+++++|. .|.|+|||+.+...++.+.+|..++..+.|+|+++.++++|++|+.+++||+.+......+.+|++.|.|.
T Consensus        80 G~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g  159 (487)
T KOG0310|consen   80 GRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCG  159 (487)
T ss_pred             CeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEee
Confidence            99999999 69999999888778899999999999999999999999999999999999999998877999999999999


Q ss_pred             EEecCC-CEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCceEee
Q 001295          901 AFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVK  979 (1106)
Q Consensus       901 ~~s~d~-~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~~~  979 (1106)
                      +|+|-. ..++|||.||+|++||+....   ........|     .+|..+.|-|.|..+++++...|+|||+.+|....
T Consensus       160 ~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~elnhg-----~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll  231 (487)
T KOG0310|consen  160 DISPANDHIVVTGSYDGKVRLWDTRSLT---SRVVELNHG-----CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLL  231 (487)
T ss_pred             ccccCCCeEEEecCCCceEEEEEeccCC---ceeEEecCC-----CceeeEEEcCCCCEEEEcCCCeEEEEEecCCceeh
Confidence            999865 489999999999999998743   233444333     37899999999999999999999999999665544


Q ss_pred             ecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEe
Q 001295          980 QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL 1059 (1106)
Q Consensus       980 ~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~ 1059 (1106)
                      .... .|...|+|+++..+++.|++|+-|+.|+|||+.+.+.+..+.    .|..     |.  +++.+| |++.++.|.
T Consensus       232 ~~~~-~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~----~~~p-----vL--siavs~-dd~t~viGm  298 (487)
T KOG0310|consen  232 TSMF-NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK----YPGP-----VL--SIAVSP-DDQTVVIGM  298 (487)
T ss_pred             hhhh-cccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee----cccc-----ee--eEEecC-CCceEEEec
Confidence            4332 489999999999999999999999999999999999998887    4433     44  788888 678999999


Q ss_pred             CCCcEEEEeecCCC
Q 001295         1060 SDGGVHVFEPLESE 1073 (1106)
Q Consensus      1060 ~Dg~v~vW~~~~~~ 1073 (1106)
                      .||.+.+=+....+
T Consensus       299 snGlv~~rr~~~k~  312 (487)
T KOG0310|consen  299 SNGLVSIRRREVKK  312 (487)
T ss_pred             ccceeeeehhhccc
Confidence            99998887655444

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.96  E-value=1.6e-27  Score=235.80  Aligned_cols=311  Identities=16%  Similarity=0.291  Sum_probs=228.7

Q ss_pred             cccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCC-ceEEEEEecCCeEEEEeCC
Q 001295          455 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKEN-IQFIFSTALDGKIKAWLYD  533 (1106)
Q Consensus       455 ~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~  533 (1106)
                      -|.+.|.++...  ++  .++||+.||.+++|| ..|+.+..+.||.++|.+++|..... ...|++++.|.++++|.++
T Consensus       103 ~hdDWVSsv~~~--~~--~IltgsYDg~~riWd-~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~  177 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--SK--WILTGSYDGTSRIWD-LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWN  177 (423)
T ss_pred             cchhhhhhhccc--Cc--eEEEeecCCeeEEEe-cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEec
Confidence            488899999887  45  799999999999999 78999999999999999888754332 1246677777777766554


Q ss_pred             CCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCc
Q 001295          534 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPAS  613 (1106)
Q Consensus       534 ~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v  613 (1106)
                      .+....                                                           +.+....  +|...|
T Consensus       178 ~~~~~~-----------------------------------------------------------~~~~~~~--GHk~~V  196 (423)
T KOG0313|consen  178 VGENKV-----------------------------------------------------------KALKVCR--GHKRSV  196 (423)
T ss_pred             Cchhhh-----------------------------------------------------------hHHhHhc--ccccce
Confidence            321110                                                           0111111  345589


Q ss_pred             CeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhccccccccccccccc
Q 001295          614 PRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSI  693 (1106)
Q Consensus       614 ~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  693 (1106)
                      .+++..++|..+++|+.|.+|.||+..+.  ....++.......             +     ........         
T Consensus       197 ~sVsv~~sgtr~~SgS~D~~lkiWs~~~~--~~~~~E~~s~~rr-------------k-----~~~~~~~~---------  247 (423)
T KOG0313|consen  197 DSVSVDSSGTRFCSGSWDTMLKIWSVETD--EEDELESSSNRRR-------------K-----KQKREKEG---------  247 (423)
T ss_pred             eEEEecCCCCeEEeecccceeeecccCCC--ccccccccchhhh-------------h-----hhhhhhcc---------
Confidence            99999999999999999999999994332  1111111000000             0     00000000         


Q ss_pred             CCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeecc
Q 001295          694 PGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQ  773 (1106)
Q Consensus       694 ~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  773 (1106)
                                                         ..+...+.+  .+|...|.++.|++ ...+++++.|.+|+.||+.
T Consensus       248 -----------------------------------~~r~P~vtl--~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDle  289 (423)
T KOG0313|consen  248 -----------------------------------GTRTPLVTL--EGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLE  289 (423)
T ss_pred             -----------------------------------cccCceEEe--cccccceeeEEEcC-CCceEeecccceEEEEEee
Confidence                                               000000011  45999999999999 5568999999999999887


Q ss_pred             ccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCc---eeeeecC
Q 001295          774 RTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFK---TMATFMP  849 (1106)
Q Consensus       774 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~---~~~~~~~  849 (1106)
                      .                      |.......    ......++.++|..++|++|+ |..|++||-+++.   ..+++.+
T Consensus       290 t----------------------g~~~~~~~----~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~g  343 (423)
T KOG0313|consen  290 T----------------------GGLKSTLT----TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIG  343 (423)
T ss_pred             c----------------------ccceeeee----cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeec
Confidence            4                      33222211    467789999999999999998 9999999988643   3467899


Q ss_pred             CCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecce-EEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCC
Q 001295          850 PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE-VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG  925 (1106)
Q Consensus       850 ~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~-~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~  925 (1106)
                      |.+-|.++.|+|.+..+|++|+.|+++++||+++.+ .+..+.+|.+.|.++.|. ++..|+|||.|.+|+|+.-..
T Consensus       344 H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~~  419 (423)
T KOG0313|consen  344 HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGSP  419 (423)
T ss_pred             chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEecccc
Confidence            999999999999888999999999999999999877 899999999999999997 667999999999999987543

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=1.2e-28  Score=246.36  Aligned_cols=260  Identities=18%  Similarity=0.275  Sum_probs=216.7

Q ss_pred             CCCCCCCCcceeeecc-CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCC
Q 001295          333 FSTPEDLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP  411 (1106)
Q Consensus       333 ~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h  411 (1106)
                      ..-.+.+|......+. |..+|..+.|-++... |++|+.|..|++|++..++.-..                 .++.|-
T Consensus       157 ~~v~~~lpS~~~~~ld~h~gev~~v~~l~~sdt-latgg~Dr~Ik~W~v~~~k~~~~-----------------~tLaGs  218 (459)
T KOG0288|consen  157 HFVEDTLPSRALFVLDAHEGEVHDVEFLRNSDT-LATGGSDRIIKLWNVLGEKSELI-----------------STLAGS  218 (459)
T ss_pred             hhhhcccchhhhhhhhccccccceeEEccCcch-hhhcchhhhhhhhhcccchhhhh-----------------hhhhcc
Confidence            3344667887777777 9999999999999774 99999999999999987652111                 147888


Q ss_pred             CcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCC
Q 001295          412 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG  491 (1106)
Q Consensus       412 ~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~  491 (1106)
                      .+.|+.+.|.++++++++++.|+.+++|++...+...   +|.||++.|+++.|.....  .+++|+.|.+|++||+...
T Consensus       219 ~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~  293 (459)
T KOG0288|consen  219 LGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKA  293 (459)
T ss_pred             CCCcceeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhh
Confidence            8999999999999999999999999999999877555   7999999999999988776  5999999999999999999


Q ss_pred             ceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeE
Q 001295          492 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV  571 (1106)
Q Consensus       492 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~  571 (1106)
                      .|.+++- ....+..|+..    ...+++|-.|+.|++||.++.........++ .|+++..++++.             
T Consensus       294 ~C~kt~l-~~S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~-------------  354 (459)
T KOG0288|consen  294 YCSKTVL-PGSQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGL-------------  354 (459)
T ss_pred             heecccc-ccccccceEec----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCe-------------
Confidence            8887764 23445555543    2568999999999999999988877776665 567666666665             


Q ss_pred             EEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCC--CCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295          572 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG--LPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       572 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                              .+++++.|.++.+.|+++.+....+...+.  ....+.+.|||++.|+++|+.||.|+||++.++
T Consensus       355 --------~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg  419 (459)
T KOG0288|consen  355 --------ELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG  419 (459)
T ss_pred             --------EEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc
Confidence                    688899999999999999998888865432  234788999999999999999999999999888

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=1.4e-27  Score=229.19  Aligned_cols=312  Identities=14%  Similarity=0.190  Sum_probs=233.3

Q ss_pred             CcceeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCC----ccccccccCCCCcCe
Q 001295          340 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACS----MPLQAALVKDPGVSV  415 (1106)
Q Consensus       340 ~~~~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~----~~~~~~~~~~h~~~V  415 (1106)
                      ..+..++..|+.++.+.+|||||. |+|||+.|..|+|.|++..-..  .  +.-++..+.    .|.. .++-.|.+.|
T Consensus       102 ~yEt~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlak--s--~~~em~~~~~qa~hPvI-RTlYDH~dev  175 (430)
T KOG0640|consen  102 EYETKYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAK--S--KPKEMISGDTQARHPVI-RTLYDHVDEV  175 (430)
T ss_pred             ccceEEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhh--c--chhhhccCCcccCCceE-eehhhccCcc
Confidence            334556667999999999999999 7999999999999999731100  0  001111111    1222 2578999999


Q ss_pred             EEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeE
Q 001295          416 NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY  495 (1106)
Q Consensus       416 ~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~  495 (1106)
                      +++.|+|....|++|+.|++|+++|+......+.++.++ ...+|.++.|+|.|.  +++.|.+-.++++||+.+-++..
T Consensus       176 n~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~Qcfv  252 (430)
T KOG0640|consen  176 NDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFV  252 (430)
T ss_pred             cceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEee
Confidence            999999999999999999999999998655444333343 456899999999999  88999999999999999988765


Q ss_pred             EE---eccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeC-CCCeeEEEEEecCCCeEEEeeeccceeE
Q 001295          496 IF---EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA-PGRWCTTMAYSADGTRTYQGFRKRSLGV  571 (1106)
Q Consensus       496 ~~---~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~i~~  571 (1106)
                      .-   .+|.+.|+++.++  +++++.++++.||.|++||--+.+++.++.. |++                    ..+.+
T Consensus       253 sanPd~qht~ai~~V~Ys--~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~g--------------------sevcS  310 (430)
T KOG0640|consen  253 SANPDDQHTGAITQVRYS--STGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGG--------------------SEVCS  310 (430)
T ss_pred             ecCcccccccceeEEEec--CCccEEEEeccCCcEEeeccccHHHHHHHHhhcCC--------------------ceeee
Confidence            43   4699999999975  4558999999999999999877666654432 222                    24444


Q ss_pred             EEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCC---CcCeEEEccCCCEEEEEeC-CCcEEEEEccCCchhhh
Q 001295          572 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP---ASPRIRFNKDGCLLAVSTN-DNGIKILATSDGIRLLR  647 (1106)
Q Consensus       572 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~---~v~~v~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~  647 (1106)
                      ..|..+++++++.+.|..+++|.+.+++++..+.+-+..+   .-+...|+....+++.-.. .+.+.-||.+++.+.  
T Consensus       311 a~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~--  388 (430)
T KOG0640|consen  311 AVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRV--  388 (430)
T ss_pred             EEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhh--
Confidence            4455555589999999999999999999999987653322   2234567777777665543 467888888776221  


Q ss_pred             hhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCC
Q 001295          648 TFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELS  727 (1106)
Q Consensus       648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~  727 (1106)
                                                                                             .+|.     
T Consensus       389 -----------------------------------------------------------------------~l~s-----  392 (430)
T KOG0640|consen  389 -----------------------------------------------------------------------ALLS-----  392 (430)
T ss_pred             -----------------------------------------------------------------------hhcc-----
Confidence                                                                                   1111     


Q ss_pred             CCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeec
Q 001295          728 EPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKW  772 (1106)
Q Consensus       728 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~  772 (1106)
                                  .+|.+.+..+.-+|.+..+++++.|..++.|--
T Consensus       393 ------------lgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr  425 (430)
T KOG0640|consen  393 ------------LGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR  425 (430)
T ss_pred             ------------cCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence                        238888999999999999999999999999953

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2e-27  Score=222.28  Aligned_cols=287  Identities=18%  Similarity=0.255  Sum_probs=227.4

Q ss_pred             EEEEEec--CCCeEEEEEec-----cCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc-CCC
Q 001295          354 MSMDFHP--VQQTLLLVGTN-----VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGS  425 (1106)
Q Consensus       354 ~~~~~sp--~g~~llatg~~-----dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~  425 (1106)
                      .++.|||  .++..+|++..     .|++.|-++..++.+..  +.-+               .-++.+..++||+ ...
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e--~~s~---------------d~~D~LfdV~Wse~~e~   74 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE--CQSY---------------DTEDGLFDVAWSENHEN   74 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEE--EEee---------------ecccceeEeeecCCCcc
Confidence            5678888  45533444433     47899999975554432  2222               2355899999999 456


Q ss_pred             EEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeE
Q 001295          426 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY  505 (1106)
Q Consensus       426 ~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~  505 (1106)
                      .+++++.||+++|||+.-  .-.++..++.|...|.++.|++-.+. .+++++.|++|++|+...++.++++.||...|.
T Consensus        75 ~~~~a~GDGSLrl~d~~~--~s~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy  151 (311)
T KOG0277|consen   75 QVIAASGDGSLRLFDLTM--PSKPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIY  151 (311)
T ss_pred             eEEEEecCceEEEeccCC--CCcchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEEE
Confidence            778889999999999543  33456678999999999999998776 678889999999999999999999999999999


Q ss_pred             EEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEE
Q 001295          506 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG  585 (1106)
Q Consensus       506 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  585 (1106)
                      ...|+|... +++++++.|+++++||++.......+..|...+.++.|+.-..                    +.+++|+
T Consensus       152 ~a~~sp~~~-nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~--------------------~vl~Tg~  210 (311)
T KOG0277|consen  152 QAAFSPHIP-NLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNH--------------------NVLATGG  210 (311)
T ss_pred             EEecCCCCC-CeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCC--------------------cEEEecC
Confidence            999998654 7999999999999999999888878888888888887776554                    4688999


Q ss_pred             CCCeEEEEECCCc-ceeEEEccCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCC
Q 001295          586 DDFSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS  663 (1106)
Q Consensus       586 ~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  663 (1106)
                      .|+.|+.||++.- .++..+.+|  .-.|+.+.||| ...+|++++.|-+++|||...+...+.....|+.-+...    
T Consensus       211 vd~~vr~wDir~~r~pl~eL~gh--~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~----  284 (311)
T KOG0277|consen  211 VDNLVRGWDIRNLRTPLFELNGH--GLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGL----  284 (311)
T ss_pred             CCceEEEEehhhccccceeecCC--ceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEecc----
Confidence            9999999999874 456666655  44799999999 567899999999999999987767777777777644321    


Q ss_pred             CCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEec
Q 001295          664 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL  723 (1106)
Q Consensus       664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~  723 (1106)
                        .++                                  ..+...+++.+.|..+.||+.
T Consensus       285 --Dws----------------------------------~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  285 --DWS----------------------------------LFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             --ccc----------------------------------cccCceeeecccccceeeecc
Confidence              111                                  125678899999999999984

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=3.6e-27  Score=241.55  Aligned_cols=246  Identities=22%  Similarity=0.266  Sum_probs=200.1

Q ss_pred             cCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEE
Q 001295          348 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF  427 (1106)
Q Consensus       348 ~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l  427 (1106)
                      ...+.|.+++|||...|=+|+.+ .-.|.||+..+......                   +..-...|++++|-.||++|
T Consensus        24 ke~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~-------------------~srFk~~v~s~~fR~DG~Ll   83 (487)
T KOG0310|consen   24 KEHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKT-------------------FSRFKDVVYSVDFRSDGRLL   83 (487)
T ss_pred             cccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhh-------------------HHhhccceeEEEeecCCeEE
Confidence            35689999999997766455544 36899999887665542                   34456689999999999999


Q ss_pred             EEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEE
Q 001295          428 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV  507 (1106)
Q Consensus       428 as~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  507 (1106)
                      |+|+..|.|+|+|+.+...++   .+.+|+.+|..+.|+|++.. .+++|++|+.+++||+.+......+.+|++.|.|.
T Consensus        84 aaGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g  159 (487)
T KOG0310|consen   84 AAGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCG  159 (487)
T ss_pred             EccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeEee
Confidence            999999999999976644444   58899999999999999887 89999999999999999999877999999999999


Q ss_pred             eccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECC
Q 001295          508 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD  587 (1106)
Q Consensus       508 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  587 (1106)
                      +|++.. +.+++|||.||.|++||++.......--.|+.+|.++.+-|.|.                     .+++++ .
T Consensus       160 ~~~~~~-~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs---------------------~iasAg-G  216 (487)
T KOG0310|consen  160 DISPAN-DHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGS---------------------LIASAG-G  216 (487)
T ss_pred             ccccCC-CeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCC---------------------EEEEcC-C
Confidence            998754 48999999999999999998754444445777788887777765                     455544 5


Q ss_pred             CeEEEEECCCccee-EEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295          588 FSIKFWDMDSVQLL-TSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       588 ~~i~iwd~~~~~~~-~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                      +.|++||+.+|... ..+..  |...|+|+.+..++..|++|+-|+.+++||+.+-
T Consensus       217 n~vkVWDl~~G~qll~~~~~--H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~  270 (487)
T KOG0310|consen  217 NSVKVWDLTTGGQLLTSMFN--HNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY  270 (487)
T ss_pred             CeEEEEEecCCceehhhhhc--ccceEEEEEeecCCceEeecccccceEEEEccce
Confidence            68999999865544 44332  3568999999999999999999999999996443

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.96  E-value=8.1e-26  Score=236.72  Aligned_cols=511  Identities=18%  Similarity=0.223  Sum_probs=333.6

Q ss_pred             eeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEE
Q 001295          493 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV  572 (1106)
Q Consensus       493 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~  572 (1106)
                      .+..+.+|...|+.+.|++-.| .+|++|+.|..|++|.+..+. ...+...              .+..|+.+-.+-++
T Consensus        71 ~i~~l~~H~d~VtDl~FspF~D-~LLAT~S~D~~VKiW~lp~g~-~q~LSap--------------e~~~g~~~~~vE~l  134 (1012)
T KOG1445|consen   71 DIGILAAHGDQVTDLGFSPFAD-ELLATCSRDEPVKIWKLPRGH-SQKLSAP--------------EIDVGGGNVIVECL  134 (1012)
T ss_pred             ccceeecccceeeccCccccch-hhhhcccCCCeeEEEecCCCc-ccccCCc--------------ceeecCCceEEEEe
Confidence            4567889999999999998877 599999999999999887321 1111111              22333444467778


Q ss_pred             EEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhccc
Q 001295          573 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL  652 (1106)
Q Consensus       573 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  652 (1106)
                      .|+|...-++..+..|.+++||+.+++.+..+.+|  ...|.++.|+.||.+|++++.|..|+|||.+...+.++..++|
T Consensus       135 ~fHpTaDgil~s~a~g~v~i~D~stqk~~~el~~h--~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H  212 (1012)
T KOG1445|consen  135 RFHPTADGILASGAHGSVYITDISTQKTAVELSGH--TDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGH  212 (1012)
T ss_pred             ecccCcCceEEeccCceEEEEEcccCceeecccCC--chhhhccccccCCceEeeecCCcceEEeCCccCCCcccccccc
Confidence            88887777888888999999999999999888877  4579999999999999999999999999999877888887877


Q ss_pred             ccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCC----CceeeEecCCCCC
Q 001295          653 AYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESN----DKSKVWKLTELSE  728 (1106)
Q Consensus       653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----~~i~vw~~~~~~~  728 (1106)
                      ......                                        .+.+..+.+.+++.+.+    ..+++||......
T Consensus       213 ~~~rds----------------------------------------Rv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~  252 (1012)
T KOG1445|consen  213 GGMRDS----------------------------------------RVLWAGNWERLISTGFTTKRIREVRAYDTRKFGA  252 (1012)
T ss_pred             ccchhh----------------------------------------eeeeccchhhhhhcccchhhheeeeeeeccccCC
Confidence            653110                                        11112223455555543    4688898876544


Q ss_pred             CccceecccCccccccceEEEEEcCCCceEEEeec-CceEEEeecccc--------------------------------
Q 001295          729 PNQCRSLRLPENLRATKISRLIFTNSGNAILALAS-NAIHLLWKWQRT--------------------------------  775 (1106)
Q Consensus       729 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~--------------------------------  775 (1106)
                      ......+.     ....|.---|.||.+.++.++. +..+..+.+...                                
T Consensus       253 p~~tleld-----~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~  327 (1012)
T KOG1445|consen  253 PVHTLELD-----SSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDG  327 (1012)
T ss_pred             cceeEEee-----cccceEeeeecCCCceEEEecCCcceEEEEEecCCCcchhhhhhhcchhhhccceecchhhhhhcch
Confidence            33322221     2344555567888877666555 566766665432                                


Q ss_pred             ---------------------------------------------------------cc--------C--------C---
Q 001295          776 ---------------------------------------------------------ER--------N--------S---  779 (1106)
Q Consensus       776 ---------------------------------------------------------~~--------~--------~---  779 (1106)
                                                                               +.        +        +   
T Consensus       328 EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~  407 (1012)
T KOG1445|consen  328 EVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPGCTAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPK  407 (1012)
T ss_pred             hhhhheecccCceeecccccchhhhhhhhhhhCccccCCccCcCccceecCccccccccccCchhccCCCCCCCCCCCcc
Confidence                                                                     00        0        0   


Q ss_pred             -------------------------CCccccc--c--Cc------c-c----cCCCCC----------------------
Q 001295          780 -------------------------SGKATAS--V--AP------Q-L----WQPPSG----------------------  797 (1106)
Q Consensus       780 -------------------------~~~~~~~--~--~~------~-~----w~~~~~----------------------  797 (1106)
                                               .+.....  .  .+      + +    +....|                      
T Consensus       408 ~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~  487 (1012)
T KOG1445|consen  408 VAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVPKKEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTIS  487 (1012)
T ss_pred             cccCCCCccccCCCCCCCccccccccccCCCccccCCCcCcchhhhhhcccccccccCccCCCcccccccCCCCCccccC
Confidence                                     0000000  0  00      0 0    000000                      


Q ss_pred             -----------Cccc------c--------ccC----------------------------------------C-CCCCC
Q 001295          798 -----------IMMT------N--------DVT----------------------------------------D-SNPEE  811 (1106)
Q Consensus       798 -----------~~~~------~--------~~~----------------------------------------~-~~~~~  811 (1106)
                                 ..++      .        ..+                                        | .+|.+
T Consensus       488 ~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks  567 (1012)
T KOG1445|consen  488 PEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNFGKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKS  567 (1012)
T ss_pred             CCcccccCCCCcccccccccccccCccccccCCCCCCcccCCCccccccccccccccccceeeccchheeeccCccccch
Confidence                       0000      0        000                                        0 00100


Q ss_pred             C-e------------eEEEEecCCCEEEE---EeCCeEEEEEcCC-Cceeee-ecC--CCCCeeEEEEecCCCceEEEee
Q 001295          812 A-V------------PCFALSKNDSYVMS---ASGGKISLFNMMT-FKTMAT-FMP--PPPAATFLAFHPQDNNIIAIGM  871 (1106)
Q Consensus       812 ~-v------------~~l~~s~~~~~l~~---~sdg~i~vwd~~~-~~~~~~-~~~--~~~~v~~l~~s~~d~~~la~g~  871 (1106)
                      . |            .+=.|..+.+++|+   |+.|.|.||++.. |++.-. +.+  ....|+.+.|.|-|...||+++
T Consensus       568 ~hi~NLrnln~~~PgEsnGfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~  647 (1012)
T KOG1445|consen  568 AHISNLRNLNTRLPGESNGFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVAT  647 (1012)
T ss_pred             hhhhhhhcccccCCCccCceeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecc
Confidence            0 0            01123334455553   3478999999974 332211 111  3456999999999999999999


Q ss_pred             CCCcEEEEEeecc-------eEEEEecCcccCeeEEEEecC-CCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCC
Q 001295          872 DDSSIQIYNVRVD-------EVKSKLKGHSKRITGLAFSHA-LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPT  943 (1106)
Q Consensus       872 ~dg~v~iwd~~~~-------~~~~~l~~h~~~V~~l~~s~d-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  943 (1106)
                      +||.|++|.+..+       ..-..+.+|...|+++.|+|- ...|++++.|.+|++||+.+.+.     ...+.+|.. 
T Consensus       648 ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~-----~~~l~gHtd-  721 (1012)
T KOG1445|consen  648 DDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKL-----YSRLVGHTD-  721 (1012)
T ss_pred             cCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhh-----hheeccCcC-
Confidence            9999999999764       244678899999999999985 46899999999999999998553     445667775 


Q ss_pred             CCCCceEEEcCCCcEEEE-EeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCC----eEEEEEcCC
Q 001295          944 AQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA----TVCVFSAAN 1018 (1106)
Q Consensus       944 ~~~i~~~~~s~dg~~l~~-~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg----~i~vwd~~~ 1018 (1106)
                        .|..++|||||+.+|+ +.|++|++|+.++++..-.-....-...-..|.|.-||+++++.+.|.    .|.+||.++
T Consensus       722 --qIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~  799 (1012)
T KOG1445|consen  722 --QIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQT  799 (1012)
T ss_pred             --ceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhh
Confidence              8999999999999999 899999999998775422111001123345677888999988777664    588999876


Q ss_pred             ceeE--EeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCCCccCCCCCCC
Q 001295         1019 LKLR--CRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVD 1083 (1106)
Q Consensus      1019 ~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~~~~~~~~~~~ 1083 (1106)
                      ....  .+..    +     +..-.++--.|.++.+-++++|-.|..|+++++-.....+-...||.
T Consensus       800 l~~~pl~t~~----l-----Dvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f~  857 (1012)
T KOG1445|consen  800 LDLRPLYTQV----L-----DVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPFM  857 (1012)
T ss_pred             ccCCcceeee----e-----cccCccccccccCCCceEEEecCCCceEEEEEecCCCceeeeccccc
Confidence            5422  2111    0     00011223345565566788999999999999987775555555543

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=4.5e-27  Score=238.81  Aligned_cols=269  Identities=18%  Similarity=0.269  Sum_probs=216.1

Q ss_pred             eeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeecc-CcCCccccccccCCCCcCeEEEEEccC
Q 001295          345 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDL-GACSMPLQAALVKDPGVSVNRVIWSPD  423 (1106)
Q Consensus       345 ~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~-~~~~~~~~~~~~~~h~~~V~~l~~spd  423 (1106)
                      ..-.|.-.|+||+++||+++ .++++.+|+|.=|++.+|+.... ..+--++ .....+....- .+|...|.+++.|+|
T Consensus       137 ~~~~H~~s~~~vals~d~~~-~fsask~g~i~kw~v~tgk~~~~-i~~~~ev~k~~~~~~k~~r-~~h~keil~~avS~D  213 (479)
T KOG0299|consen  137 VIGKHQLSVTSVALSPDDKR-VFSASKDGTILKWDVLTGKKDRY-IIERDEVLKSHGNPLKESR-KGHVKEILTLAVSSD  213 (479)
T ss_pred             eeccccCcceEEEeeccccc-eeecCCCcceeeeehhcCccccc-ccccchhhhhccCCCCccc-ccccceeEEEEEcCC
Confidence            33449999999999999997 88999999999999999986521 0000000 00112222222 489999999999999


Q ss_pred             CCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCC
Q 001295          424 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP  503 (1106)
Q Consensus       424 g~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~  503 (1106)
                      |+|||+|+.|..|.||+..+.+.++   .+.+|.+.|.+++|-....  -+++++.|++|++|+++....+.++-||...
T Consensus       214 gkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetlyGHqd~  288 (479)
T KOG0299|consen  214 GKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLYGHQDG  288 (479)
T ss_pred             CcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHhCCccc
Confidence            9999999999999999999988776   6899999999999976655  6899999999999999999999999999999


Q ss_pred             eEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEE
Q 001295          504 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA  583 (1106)
Q Consensus       504 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  583 (1106)
                      |.++......  ..+-+|+.|+++++|++.. +....+.++...+.+++|-.+..                      +++
T Consensus       289 v~~IdaL~re--R~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~~H----------------------fvs  343 (479)
T KOG0299|consen  289 VLGIDALSRE--RCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFINDEH----------------------FVS  343 (479)
T ss_pred             eeeechhccc--ceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecccc----------------------eee
Confidence            9999864333  4555566999999999943 55556677777788888877664                      999


Q ss_pred             EECCCeEEEEECCCcceeEEEccC-C---------CCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhh
Q 001295          584 AGDDFSIKFWDMDSVQLLTSIDAD-G---------GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL  646 (1106)
Q Consensus       584 ~~~d~~i~iwd~~~~~~~~~~~~~-~---------~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  646 (1106)
                      |+.+|.|.+|++...+++.+.... +         +..+|++++..|...++++|+.+|.|++|-+.++.+.+
T Consensus       344 GSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i  416 (479)
T KOG0299|consen  344 GSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAI  416 (479)
T ss_pred             ccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcccc
Confidence            999999999999999888776421 1         11278899999999999999999999999998885433

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.96  E-value=2.2e-26  Score=216.86  Aligned_cols=235  Identities=13%  Similarity=0.107  Sum_probs=198.8

Q ss_pred             eeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCC
Q 001295          345 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  424 (1106)
Q Consensus       345 ~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg  424 (1106)
                      .+.+|..+++.+.|+.+|. ||.+++.|.++.||--.+|+.+.+                   +.||++.|+|+..+.+.
T Consensus         5 ~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGt-------------------y~GHtGavW~~Did~~s   64 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGT-------------------YDGHTGAVWCCDIDWDS   64 (327)
T ss_pred             ccccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeee-------------------ecCCCceEEEEEecCCc
Confidence            4556999999999999999 799999999999999989999884                   79999999999999999


Q ss_pred             CEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEe----cCCCcEEEEeCC-------CCce
Q 001295          425 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC----GDDKTIKVWDAT-------NGAK  493 (1106)
Q Consensus       425 ~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~----~~d~~i~iwd~~-------~~~~  493 (1106)
                      ++|++|+.|.++++||+++|+++...    .-..+|..+.|+++|.. .+++.    +..+.|.++|++       ..++
T Consensus        65 ~~liTGSAD~t~kLWDv~tGk~la~~----k~~~~Vk~~~F~~~gn~-~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep  139 (327)
T KOG0643|consen   65 KHLITGSADQTAKLWDVETGKQLATW----KTNSPVKRVDFSFGGNL-ILASTDKQMGYTCFVSVFDIRDDSSDIDSEEP  139 (327)
T ss_pred             ceeeeccccceeEEEEcCCCcEEEEe----ecCCeeEEEeeccCCcE-EEEEehhhcCcceEEEEEEccCChhhhcccCc
Confidence            99999999999999999999988743    24678999999999984 23332    345789999998       4566


Q ss_pred             eEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCcee-EeeCCCCeeEEEEEecCCCeEEEeeeccceeEE
Q 001295          494 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV  572 (1106)
Q Consensus       494 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~  572 (1106)
                      ...+..+...++.+.|.+..  +.|++|..||.|..||++++.... ....|...|+.+.+++|..              
T Consensus       140 ~~kI~t~~skit~a~Wg~l~--~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T--------------  203 (327)
T KOG0643|consen  140 YLKIPTPDSKITSALWGPLG--ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT--------------  203 (327)
T ss_pred             eEEecCCccceeeeeecccC--CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcc--------------
Confidence            78888889999999997665  799999999999999999875544 4456666677776666665              


Q ss_pred             EEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeC
Q 001295          573 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN  630 (1106)
Q Consensus       573 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  630 (1106)
                             ++++++.|.+-++||..+-+.++++...   .+|++.+++|....++.|+.
T Consensus       204 -------~FiT~s~Dttakl~D~~tl~v~Kty~te---~PvN~aaisP~~d~VilgGG  251 (327)
T KOG0643|consen  204 -------YFITGSKDTTAKLVDVRTLEVLKTYTTE---RPVNTAAISPLLDHVILGGG  251 (327)
T ss_pred             -------eEEecccCccceeeeccceeeEEEeeec---ccccceecccccceEEecCC
Confidence                   8999999999999999999999998754   36999999998777777764

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.7e-27  Score=261.38  Aligned_cols=272  Identities=14%  Similarity=0.174  Sum_probs=205.8

Q ss_pred             cCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEE------------------------------e--------
Q 001295          348 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL------------------------------R--------  389 (1106)
Q Consensus       348 ~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~------------------------------~--------  389 (1106)
                      .|.+.||++.||+||+| ||+|+.||.|+||.+...+....                              +        
T Consensus       265 ah~gaIw~mKFS~DGKy-LAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~  343 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKY-LASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS  343 (712)
T ss_pred             ccCCcEEEEEeCCCCce-eeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence            49999999999999996 99999999999999876211100                              0        


Q ss_pred             ---eeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEc
Q 001295          390 ---NFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS  466 (1106)
Q Consensus       390 ---~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s  466 (1106)
                         ...+.+......+.+...+.||.+.|..+.||.++ +|++++.|++|++|++...++++    ...|.+.|+||+|+
T Consensus       344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~----~F~HndfVTcVaFn  418 (712)
T KOG0283|consen  344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLK----VFSHNDFVTCVAFN  418 (712)
T ss_pred             CCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceee----EEecCCeeEEEEec
Confidence               00000000001122334588999999999999765 78899999999999999988887    34699999999999


Q ss_pred             CCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCC
Q 001295          467 HPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGR  546 (1106)
Q Consensus       467 ~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  546 (1106)
                      |-+.. +|++|+-||.||||++...+.+.-.. -..-|+++||.|+  |+..+.|+.+|.+++|+............+  
T Consensus       419 PvDDr-yFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~Pd--Gk~avIGt~~G~C~fY~t~~lk~~~~~~I~--  492 (712)
T KOG0283|consen  419 PVDDR-YFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPD--GKGAVIGTFNGYCRFYDTEGLKLVSDFHIR--  492 (712)
T ss_pred             ccCCC-cEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccC--CceEEEEEeccEEEEEEccCCeEEEeeeEe--
Confidence            97776 99999999999999998887665544 3488999998654  689999999999999998865544322111  


Q ss_pred             eeEEEEEecCCCeEEEeeeccceeEEEEcCCC-CEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEE
Q 001295          547 WCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK-NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL  625 (1106)
Q Consensus       547 ~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l  625 (1106)
                              -.+++-.   ..+.|+.+.+.|.. ..+++.+.|..|||||.++..++..+++......-....|+.||++|
T Consensus       493 --------~~~~Kk~---~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~I  561 (712)
T KOG0283|consen  493 --------LHNKKKK---QGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHI  561 (712)
T ss_pred             --------eccCccc---cCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEE
Confidence                    1100000   01134445554433 25888999999999999999999999877666666789999999999


Q ss_pred             EEEeCCCcEEEEEccCC
Q 001295          626 AVSTNDNGIKILATSDG  642 (1106)
Q Consensus       626 ~~~~~dg~i~iwd~~~~  642 (1106)
                      +++++|..|++|+....
T Consensus       562 Vs~seDs~VYiW~~~~~  578 (712)
T KOG0283|consen  562 VSASEDSWVYIWKNDSF  578 (712)
T ss_pred             EEeecCceEEEEeCCCC
Confidence            99999999999997543

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=4.3e-27  Score=264.84  Aligned_cols=304  Identities=18%  Similarity=0.252  Sum_probs=240.1

Q ss_pred             cccceEEEEEcCCCceEEEee--cCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEe
Q 001295          742 RATKISRLIFTNSGNAILALA--SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS  819 (1106)
Q Consensus       742 ~~~~i~~~~~s~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s  819 (1106)
                      +...|.++..+|+|..+++++  .|+.++||+...-..          ....++..-...+. .+.  .|...|.|+.|+
T Consensus        12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~----------~~~~~~~~l~k~l~-~m~--~h~~sv~CVR~S   78 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD----------EKEEKNENLPKHLC-TMD--DHDGSVNCVRFS   78 (942)
T ss_pred             CCeeEEEEEecCCceeEecCCccccccceeeccccccc----------hhhhhhcccchhhe-eec--cccCceeEEEEC
Confidence            455689999999999999999  799999998753110          11122222111111 122  399999999999


Q ss_pred             cCCCEEEEEe-CCeEEEEEcCC------------------CceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEE
Q 001295          820 KNDSYVMSAS-GGKISLFNMMT------------------FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN  880 (1106)
Q Consensus       820 ~~~~~l~~~s-dg~i~vwd~~~------------------~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd  880 (1106)
                      |||++||+|+ |+.|.||+...                  .+....+.+|...|..++|+| ++.+||+++.|++|.||+
T Consensus        79 ~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn  157 (942)
T KOG0973|consen   79 PDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWN  157 (942)
T ss_pred             CCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEc
Confidence            9999999999 68899999762                  235677889999999999999 999999999999999999


Q ss_pred             eecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEE
Q 001295          881 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL  960 (1106)
Q Consensus       881 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~  960 (1106)
                      ..+.+++.++++|.+.|..+.|.|-|+++||-+.|++|+||++..+...+  .+..+-.+.........+.|||||++|+
T Consensus       158 ~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k--~It~pf~~~~~~T~f~RlSWSPDG~~la  235 (942)
T KOG0973|consen  158 AKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEK--SITKPFEESPLTTFFLRLSWSPDGHHLA  235 (942)
T ss_pred             cccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeE--eeccchhhCCCcceeeecccCCCcCeec
Confidence            99999999999999999999999999999999999999999987754432  2222223333345678899999999999


Q ss_pred             E--Ee---CCeEEEEecCCceEeeecccCCCCCCeeEEEECC-----CCC------------EEEEEEcCCeEEEEEcCC
Q 001295          961 V--VH---ETQLAIFETTKLECVKQWVPRESSAPITHATFSC-----DSQ------------LVYACFLDATVCVFSAAN 1018 (1106)
Q Consensus       961 ~--~~---d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~-----d~~------------~l~t~s~Dg~i~vwd~~~ 1018 (1106)
                      +  +.   -..+.|.+-.+.+.-..+.  +|..++.++.|+|     ..+            .+|+|+.|++|.||....
T Consensus       236 s~nA~n~~~~~~~IieR~tWk~~~~Lv--GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~  313 (942)
T KOG0973|consen  236 SPNAVNGGKSTIAIIERGTWKVDKDLV--GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL  313 (942)
T ss_pred             chhhccCCcceeEEEecCCceeeeeee--cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence            8  32   2368888888887777776  8999999999998     111            588999999999999877


Q ss_pred             ceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCC
Q 001295         1019 LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus      1019 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
                      .+.+..+.  . +.    +  -..+.++|+| ||..|+++|.||+|.+..++..+
T Consensus       314 ~RPl~vi~--~-lf----~--~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~E  358 (942)
T KOG0973|consen  314 PRPLFVIH--N-LF----N--KSIVDMSWSP-DGFSLFACSLDGTVALIHFEEKE  358 (942)
T ss_pred             CCchhhhh--h-hh----c--CceeeeeEcC-CCCeEEEEecCCeEEEEEcchHH
Confidence            76664433  1 11    1  2344999999 79999999999999999998776

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.6e-25  Score=217.91  Aligned_cols=288  Identities=22%  Similarity=0.332  Sum_probs=226.1

Q ss_pred             ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEec--CCCcEE
Q 001295          407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG--DDKTIK  484 (1106)
Q Consensus       407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~--~d~~i~  484 (1106)
                      .+..-.+.|.++.|+++|.+|++++.|.+++|||..+++.++   ++..+.-.|..++|......  ++.++  .|.+|+
T Consensus         9 ~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~---ti~skkyG~~~~~Fth~~~~--~i~sStk~d~tIr   83 (311)
T KOG1446|consen    9 VFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVK---TINSKKYGVDLACFTHHSNT--VIHSSTKEDDTIR   83 (311)
T ss_pred             ccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceee---EeecccccccEEEEecCCce--EEEccCCCCCceE
Confidence            345567799999999999999999999999999999998777   56667778999999888774  44444  489999


Q ss_pred             EEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEee
Q 001295          485 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF  564 (1106)
Q Consensus       485 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~  564 (1106)
                      .-++.+.+.++.|.||...|.+++.+|..  ..+++++.|++|++||++..++...+.....                  
T Consensus        84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~--d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~------------------  143 (311)
T KOG1446|consen   84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKD--DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR------------------  143 (311)
T ss_pred             EEEeecCceEEEcCCCCceEEEEEecCCC--CeEEecccCCeEEeeEecCCCCceEEecCCC------------------
Confidence            99999999999999999999999987766  5899999999999999997666655443332                  


Q ss_pred             eccceeEEEEcCCCCEEEEEECCCeEEEEECCCc--ceeEEEccC-CCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccC
Q 001295          565 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV--QLLTSIDAD-GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD  641 (1106)
Q Consensus       565 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~  641 (1106)
                           ..++|+|.|-++|++...+.|++||++.-  .+..++... ......+.+.|+|||++++.++..+.+++.|.-+
T Consensus       144 -----pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~  218 (311)
T KOG1446|consen  144 -----PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFD  218 (311)
T ss_pred             -----cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccC
Confidence                 23566777778888888889999999863  344444333 3345678999999999999999999999999877


Q ss_pred             CchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeE
Q 001295          642 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW  721 (1106)
Q Consensus       642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw  721 (1106)
                      | .....+..                                                                      
T Consensus       219 G-~~~~tfs~----------------------------------------------------------------------  227 (311)
T KOG1446|consen  219 G-TVKSTFSG----------------------------------------------------------------------  227 (311)
T ss_pred             C-cEeeeEee----------------------------------------------------------------------
Confidence            6 22111111                                                                      


Q ss_pred             ecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccc
Q 001295          722 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT  801 (1106)
Q Consensus       722 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~  801 (1106)
                                                    -+++                                              
T Consensus       228 ------------------------------~~~~----------------------------------------------  231 (311)
T KOG1446|consen  228 ------------------------------YPNA----------------------------------------------  231 (311)
T ss_pred             ------------------------------ccCC----------------------------------------------
Confidence                                          0110                                              


Q ss_pred             cccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecC-CCCCeeEEEEecCCCceEEEeeCCCcEEEE
Q 001295          802 NDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIY  879 (1106)
Q Consensus       802 ~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~-~~~~v~~l~~s~~d~~~la~g~~dg~v~iw  879 (1106)
                              ..--...+|+||++++++|+ ||+|.+|+++++..+..+.+ +.+++.++.|+| .-.++|++  +..+-+|
T Consensus       232 --------~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP-~~~mf~sa--~s~l~fw  300 (311)
T KOG1446|consen  232 --------GNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNP-RYAMFVSA--SSNLVFW  300 (311)
T ss_pred             --------CCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCC-ceeeeeec--CceEEEE
Confidence                    11114578899999999999 79999999999999999988 688999999999 55555554  5668888


Q ss_pred             Eee
Q 001295          880 NVR  882 (1106)
Q Consensus       880 d~~  882 (1106)
                      =..
T Consensus       301 ~p~  303 (311)
T KOG1446|consen  301 LPD  303 (311)
T ss_pred             ecc
Confidence            654

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=5.9e-27  Score=257.17  Aligned_cols=273  Identities=15%  Similarity=0.248  Sum_probs=212.4

Q ss_pred             ccccceEEEEEcCCCceEEEeecCceEEEeecccccc---------------CCCCc--------------ccc------
Q 001295          741 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTER---------------NSSGK--------------ATA------  785 (1106)
Q Consensus       741 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~---------------~~~~~--------------~~~------  785 (1106)
                      +|.+.|.++.|++||++||++|.|+.|+||.+.....               ...+.              ...      
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            5999999999999999999999999999999876110               00000              000      


Q ss_pred             ccCccccCCCCCCc---cccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEec
Q 001295          786 SVAPQLWQPPSGIM---MTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHP  861 (1106)
Q Consensus       786 ~~~~~~w~~~~~~~---~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~  861 (1106)
                      ... .+.+.....+   ....+.  +|...|..+.||.++ +|++++ |.+|++|++....|+..|. |..-||||+|+|
T Consensus       345 s~~-~~~p~~~f~f~ekP~~ef~--GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnP  419 (712)
T KOG0283|consen  345 SPC-VLLPLKAFVFSEKPFCEFK--GHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNP  419 (712)
T ss_pred             Ccc-ccCCCccccccccchhhhh--ccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecc
Confidence            001 1111111111   111234  499999999999775 677777 9999999999999999998 999999999999


Q ss_pred             CCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCC
Q 001295          862 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT  941 (1106)
Q Consensus       862 ~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~  941 (1106)
                      .|.+|+++|+-||.||||++...+++.-..-+ .-|++++|+|||+..+.|+.+|.+++|+....+......+....+..
T Consensus       420 vDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk  498 (712)
T KOG0283|consen  420 VDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKK  498 (712)
T ss_pred             cCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCcc
Confidence            99999999999999999999987765544434 78999999999999999999999999999987766555555555444


Q ss_pred             CCCCCCceEEEcCCC--cEEEEEeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCc
Q 001295          942 PTAQSDTRVQFHQDQ--IHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1019 (1106)
Q Consensus       942 ~~~~~i~~~~~s~dg--~~l~~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~ 1019 (1106)
                      .....|+.+.|.|..  +.|+++.|..|+|||.++...+..+..-.....-....|+.||++|+++++|..|+||+++..
T Consensus       499 ~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~  578 (712)
T KOG0283|consen  499 KQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF  578 (712)
T ss_pred             ccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence            444579999998754  478889999999999988888877763222344567789999999999999999999998543

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=2.4e-26  Score=258.02  Aligned_cols=244  Identities=19%  Similarity=0.341  Sum_probs=213.7

Q ss_pred             cCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEE
Q 001295          348 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF  427 (1106)
Q Consensus       348 ~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l  427 (1106)
                      .|...+.|..|. ++  .+++|+.|.+|++||..++..+..                  .+.||.+.|++++|..-+.+|
T Consensus       206 ~~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~~l  264 (537)
T KOG0274|consen  206 TDDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGDKL  264 (537)
T ss_pred             cCcchhhhheee-cC--eEEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCCEE
Confidence            367889999999 44  389999999999999999888763                  378999999999998888999


Q ss_pred             EEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEE
Q 001295          428 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV  507 (1106)
Q Consensus       428 as~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  507 (1106)
                      ++|+.|.+++|||..+|++..   ++.+|...|.++...+.    ++++|+.|.+|++|++.++.++..+.+|.++|.++
T Consensus       265 vsgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v  337 (537)
T KOG0274|consen  265 VSGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCV  337 (537)
T ss_pred             EEEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEE
Confidence            999999999999999999887   78899999999998543    68999999999999999999999999999999999


Q ss_pred             eccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECC
Q 001295          508 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD  587 (1106)
Q Consensus       508 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  587 (1106)
                      ..+    +.++++|+.|++|++||+.+.+.+..+.+|...|.++.+....                      .+++|+.|
T Consensus       338 ~~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~----------------------~~~Sgs~D  391 (537)
T KOG0274|consen  338 QLD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSEN----------------------RLLSGSLD  391 (537)
T ss_pred             Eec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcc----------------------eEEeeeec
Confidence            864    3689999999999999999999999999999999998776542                      59999999


Q ss_pred             CeEEEEECCCc-ceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhc
Q 001295          588 FSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE  650 (1106)
Q Consensus       588 ~~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  650 (1106)
                      +.|++||+.+. +++.++.+|..  .+..+  ...+++|++++.|++|++||..++ .+.+.+.
T Consensus       392 ~~IkvWdl~~~~~c~~tl~~h~~--~v~~l--~~~~~~Lvs~~aD~~Ik~WD~~~~-~~~~~~~  450 (537)
T KOG0274|consen  392 TTIKVWDLRTKRKCIHTLQGHTS--LVSSL--LLRDNFLVSSSADGTIKLWDAEEG-ECLRTLE  450 (537)
T ss_pred             cceEeecCCchhhhhhhhcCCcc--ccccc--ccccceeEeccccccEEEeecccC-ceeeeec
Confidence            99999999999 89999987754  44333  346789999999999999999888 5555443

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=4.1e-26  Score=214.48  Aligned_cols=247  Identities=18%  Similarity=0.260  Sum_probs=208.6

Q ss_pred             eccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc-CC
Q 001295          346 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DG  424 (1106)
Q Consensus       346 ~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg  424 (1106)
                      +.+|...|..|+|+-+|.+ ||+|+.|+++.||+++.......                 ....+|.+.|-.++|+| ..
T Consensus        16 ~~~~~~~v~Sv~wn~~g~~-lasgs~dktv~v~n~e~~r~~~~-----------------~~~~gh~~svdql~w~~~~~   77 (313)
T KOG1407|consen   16 LQGHVQKVHSVAWNCDGTK-LASGSFDKTVSVWNLERDRFRKE-----------------LVYRGHTDSVDQLCWDPKHP   77 (313)
T ss_pred             hhhhhhcceEEEEcccCce-eeecccCCceEEEEecchhhhhh-----------------hcccCCCcchhhheeCCCCC
Confidence            3458899999999999997 99999999999999987744322                 13689999999999999 77


Q ss_pred             CEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCe
Q 001295          425 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV  504 (1106)
Q Consensus       425 ~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v  504 (1106)
                      ..|++++.|.+|++||+..+++...+.    ..+.=..+.|+|+|.  +++.++.|..|...|.++.+.....+ ..-.+
T Consensus        78 d~~atas~dk~ir~wd~r~~k~~~~i~----~~~eni~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~  150 (313)
T KOG1407|consen   78 DLFATASGDKTIRIWDIRSGKCTARIE----TKGENINITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEEQ-FKFEV  150 (313)
T ss_pred             cceEEecCCceEEEEEeccCcEEEEee----ccCcceEEEEcCCCC--EEEEecCcccEEEEEecccceeehhc-cccee
Confidence            899999999999999999999876432    233446689999999  89999999999999999888776655 44567


Q ss_pred             EEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEE
Q 001295          505 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  584 (1106)
Q Consensus       505 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  584 (1106)
                      .-++|+.+.  ++++.....|+|.|-.+...+++..+..|.....++.|+|+|+                     +|++|
T Consensus       151 ne~~w~~~n--d~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~Gr---------------------yfA~G  207 (313)
T KOG1407|consen  151 NEISWNNSN--DLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGR---------------------YFATG  207 (313)
T ss_pred             eeeeecCCC--CEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCc---------------------eEeec
Confidence            778887443  5777777789999999998888888888887777777776666                     89999


Q ss_pred             ECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295          585 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       585 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                      +.|..+.+||+..--+++.+....-  +|+.++|+-||++||+|+.|..|-|=++.+|
T Consensus       208 sADAlvSLWD~~ELiC~R~isRldw--pVRTlSFS~dg~~lASaSEDh~IDIA~vetG  263 (313)
T KOG1407|consen  208 SADALVSLWDVDELICERCISRLDW--PVRTLSFSHDGRMLASASEDHFIDIAEVETG  263 (313)
T ss_pred             cccceeeccChhHhhhheeeccccC--ceEEEEeccCcceeeccCccceEEeEecccC
Confidence            9999999999999888888876654  7999999999999999999999998888877

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=4.9e-27  Score=219.68  Aligned_cols=253  Identities=13%  Similarity=0.256  Sum_probs=211.5

Q ss_pred             ceeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEc
Q 001295          342 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  421 (1106)
Q Consensus       342 ~~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s  421 (1106)
                      ...+.+.-.+.+..++||++....+++++.||+++|||......                  +-..++.|...|.++.|+
T Consensus        52 ~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~------------------Pi~~~kEH~~EV~Svdwn  113 (311)
T KOG0277|consen   52 QECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK------------------PIHKFKEHKREVYSVDWN  113 (311)
T ss_pred             EEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc------------------chhHHHhhhhheEEeccc
Confidence            34445557899999999999988899999999999999543221                  112478999999999999


Q ss_pred             c-CCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEecc
Q 001295          422 P-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH  500 (1106)
Q Consensus       422 p-dg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h  500 (1106)
                      + +++.++++|-|++|++|+...+..++   ++.||...|...+|+|.... ++++++.|+++++||++.......+..|
T Consensus       114 ~~~r~~~ltsSWD~TiKLW~~~r~~Sv~---Tf~gh~~~Iy~a~~sp~~~n-lfas~Sgd~~l~lwdvr~~gk~~~i~ah  189 (311)
T KOG0277|consen  114 TVRRRIFLTSSWDGTIKLWDPNRPNSVQ---TFNGHNSCIYQAAFSPHIPN-LFASASGDGTLRLWDVRSPGKFMSIEAH  189 (311)
T ss_pred             cccceeEEeeccCCceEeecCCCCcceE---eecCCccEEEEEecCCCCCC-eEEEccCCceEEEEEecCCCceeEEEec
Confidence            9 67778888999999999998876555   79999999999999998877 8999999999999999865545559999


Q ss_pred             CCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCC-ceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCC
Q 001295          501 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN  579 (1106)
Q Consensus       501 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~  579 (1106)
                      ...+.++.|+.. +..+++||+.|+.|++||++..+ ++..+.+|+-.|..+.|||...                    .
T Consensus       190 ~~Eil~cdw~ky-~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~--------------------~  248 (311)
T KOG0277|consen  190 NSEILCCDWSKY-NHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHA--------------------S  248 (311)
T ss_pred             cceeEeeccccc-CCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchh--------------------h
Confidence            999999999754 44799999999999999999865 4557888888899999988765                    3


Q ss_pred             EEEEEECCCeEEEEECCCc-ceeEEEccCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEc
Q 001295          580 RFLAAGDDFSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILAT  639 (1106)
Q Consensus       580 ~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~  639 (1106)
                      .|++++.|-+++|||...+ ..+.+...|  ...+..+.|++ ++.++|+.+.|+.++||+.
T Consensus       249 lLaSasYDmT~riw~~~~~ds~~e~~~~H--tEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  249 LLASASYDMTVRIWDPERQDSAIETVDHH--TEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             HhhhccccceEEecccccchhhhhhhhcc--ceEEeccccccccCceeeecccccceeeecc
Confidence            5889999999999998743 455566655  44688899998 7889999999999999974

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=6.8e-26  Score=254.40  Aligned_cols=287  Identities=18%  Similarity=0.266  Sum_probs=239.7

Q ss_pred             CCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCC
Q 001295          410 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT  489 (1106)
Q Consensus       410 ~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~  489 (1106)
                      .|...+.+..|.  +.++++++.|++|++||..++..+..  .+.||.+.|.+++|..-+.  ++++|+.|.+++|||..
T Consensus       206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~--~lvsgS~D~t~rvWd~~  279 (537)
T KOG0274|consen  206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGD--KLVSGSTDKTERVWDCS  279 (537)
T ss_pred             cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCC--EEEEEecCCcEEeEecC
Confidence            466788899998  66899999999999999999876652  3889999999999987455  79999999999999999


Q ss_pred             CCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccce
Q 001295          490 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL  569 (1106)
Q Consensus       490 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i  569 (1106)
                      +|++..++.+|...|.++...+    ..+++|+.|.+|++|++.++..+..+.+|...|.++...               
T Consensus       280 sg~C~~~l~gh~stv~~~~~~~----~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~---------------  340 (537)
T KOG0274|consen  280 TGECTHSLQGHTSSVRCLTIDP----FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD---------------  340 (537)
T ss_pred             CCcEEEEecCCCceEEEEEccC----ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec---------------
Confidence            9999999999999999997432    578899999999999999988888888888888887765               


Q ss_pred             eEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhh
Q 001295          570 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF  649 (1106)
Q Consensus       570 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  649 (1106)
                              +.++++|+.|++|++||+.+++++..+.+|  ...|.++.+... .++++|+.|++|++||+.+..+++..+
T Consensus       341 --------~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH--~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl  409 (537)
T KOG0274|consen  341 --------EPLLVSGSYDGTVKVWDPRTGKCLKSLSGH--TGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTL  409 (537)
T ss_pred             --------CCEEEEEecCceEEEEEhhhceeeeeecCC--cceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhh
Confidence                    236999999999999999999999999987  558999988665 899999999999999998874444444


Q ss_pred             cccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCC
Q 001295          650 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP  729 (1106)
Q Consensus       650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~  729 (1106)
                      .+|.                                                                            
T Consensus       410 ~~h~----------------------------------------------------------------------------  413 (537)
T KOG0274|consen  410 QGHT----------------------------------------------------------------------------  413 (537)
T ss_pred             cCCc----------------------------------------------------------------------------
Confidence            3322                                                                            


Q ss_pred             ccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCC
Q 001295          730 NQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP  809 (1106)
Q Consensus       730 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  809 (1106)
                                                                                                      
T Consensus       414 --------------------------------------------------------------------------------  413 (537)
T KOG0274|consen  414 --------------------------------------------------------------------------------  413 (537)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecC-CCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEE
Q 001295          810 EEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK  887 (1106)
Q Consensus       810 ~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~-~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~  887 (1106)
                       .-+..+.  ..+++|++++ |++|++||..++++++++.+ |...|.++++.   ...+++++.||++++||+.+++++
T Consensus       414 -~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~---~~~il~s~~~~~~~l~dl~~~~~~  487 (537)
T KOG0274|consen  414 -SLVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG---KEEILCSSDDGSVKLWDLRSGTLI  487 (537)
T ss_pred             -ccccccc--cccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC---cceEEEEecCCeeEEEecccCchh
Confidence             1121111  2456788887 99999999999999999998 67888888886   347888999999999999999988


Q ss_pred             EEecCcc
Q 001295          888 SKLKGHS  894 (1106)
Q Consensus       888 ~~l~~h~  894 (1106)
                      +.+-.+.
T Consensus       488 ~~l~~~~  494 (537)
T KOG0274|consen  488 RTLLSTD  494 (537)
T ss_pred             hhhhhcc
Confidence            8774443

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=9.7e-26  Score=217.58  Aligned_cols=306  Identities=16%  Similarity=0.230  Sum_probs=225.7

Q ss_pred             EccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhccccc
Q 001295          604 IDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGL  683 (1106)
Q Consensus       604 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  683 (1106)
                      +++|  ...|++++|+.||++|++.+.|++|++|++++-.     .+.|....                           
T Consensus        82 LKgH--~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~-----~~eHr~~R---------------------------  127 (420)
T KOG2096|consen   82 LKGH--KKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFE-----NKEHRCIR---------------------------  127 (420)
T ss_pred             hhcc--CCceeeeEEcCCCceeEEEeCCceEEEEecchhh-----hhhhhHhh---------------------------
Confidence            4445  5589999999999999999999999999987631     11111100                           


Q ss_pred             ccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeec
Q 001295          684 ADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS  763 (1106)
Q Consensus       684 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  763 (1106)
                                                                         ...    .-+..+.++|+||.+.+++...
T Consensus       128 ---------------------------------------------------~nv----e~dhpT~V~FapDc~s~vv~~~  152 (420)
T KOG2096|consen  128 ---------------------------------------------------QNV----EYDHPTRVVFAPDCKSVVVSVK  152 (420)
T ss_pred             ---------------------------------------------------ccc----cCCCceEEEECCCcceEEEEEc
Confidence                                                               000    1234578899999887776665


Q ss_pred             -CceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCC
Q 001295          764 -NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTF  841 (1106)
Q Consensus       764 -dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~  841 (1106)
                       ...+++|.+...+-   |...-  ...-||-.  .     +. ..|.-.+..+-...++++|++++ |.+|.+|++. |
T Consensus       153 ~g~~l~vyk~~K~~d---G~~~~--~~v~~D~~--~-----f~-~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-G  218 (420)
T KOG2096|consen  153 RGNKLCVYKLVKKTD---GSGSH--HFVHIDNL--E-----FE-RKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-G  218 (420)
T ss_pred             cCCEEEEEEeeeccc---CCCCc--cccccccc--c-----cc-hhcccceEEEeecCCceEEEEecCCCcEEEEecC-C
Confidence             47899987754221   11100  00112210  0     00 12667778888888999999999 8899999999 8


Q ss_pred             ceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeec---c-----eEEEEecCcccCeeEEEEecCCCEEEEEc
Q 001295          842 KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---D-----EVKSKLKGHSKRITGLAFSHALNVLVSSG  913 (1106)
Q Consensus       842 ~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~---~-----~~~~~l~~h~~~V~~l~~s~d~~~l~s~s  913 (1106)
                      +.+..+......-+..+.|| +|++||+++----|++|.+--   |     ..+..|+||...|+.++||++...+++++
T Consensus       219 q~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvS  297 (420)
T KOG2096|consen  219 QLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVS  297 (420)
T ss_pred             ceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEe
Confidence            88988887777788899999 999999999888999998742   2     24467899999999999999999999999


Q ss_pred             CCCcEEEEeCCCcccc--cceeecccCC-CCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCceEeeecccCCCCCCe
Q 001295          914 ADSQLCVWSSDGWEKQ--KNRFLQIPTG-RTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPI  990 (1106)
Q Consensus       914 ~Dg~i~vwd~~~~~~~--~~~~~~~~~~-~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v  990 (1106)
                      .||+++|||++-.-..  ....+..... ..........+.++|.|+.||++....+.+|..++++....+. ..|...|
T Consensus       298 kDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e-~~h~~~I  376 (420)
T KOG2096|consen  298 KDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELE-DIHSTTI  376 (420)
T ss_pred             cCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHH-HhhcCce
Confidence            9999999997632111  1111221110 0011134468999999999999999999999999988776665 4789999


Q ss_pred             eEEEECCCCCEEEEEEcCCeEEEEE
Q 001295          991 THATFSCDSQLVYACFLDATVCVFS 1015 (1106)
Q Consensus       991 ~~l~~s~d~~~l~t~s~Dg~i~vwd 1015 (1106)
                      ++|+|++||+++++++ |..++++.
T Consensus       377 s~is~~~~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  377 SSISYSSDGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             eeEEecCCCcEEeeec-ceeeeeec
Confidence            9999999999999986 88899876

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=4.7e-27  Score=248.01  Aligned_cols=253  Identities=19%  Similarity=0.258  Sum_probs=208.0

Q ss_pred             CCCCcE---EEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCC
Q 001295          349 QGSSPM---SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  425 (1106)
Q Consensus       349 h~~~v~---~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~  425 (1106)
                      |...|.   ++..+..+...|.||+.||.|++|++........            .+. ...+..|.+.|..++...+|+
T Consensus        20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s------------~~~-~asme~HsDWVNDiiL~~~~~   86 (735)
T KOG0308|consen   20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS------------TPY-IASMEHHSDWVNDIILCGNGK   86 (735)
T ss_pred             ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcc------------cch-hhhhhhhHhHHhhHHhhcCCC
Confidence            444555   5555544433599999999999999875433211            111 124789999999999999999


Q ss_pred             EEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEE-cCCCCceEEEEecCCCcEEEEeCCCC--ceeE-------
Q 001295          426 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF-SHPNKQLCVITCGDDKTIKVWDATNG--AKQY-------  495 (1106)
Q Consensus       426 ~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~-s~d~~~~~l~s~~~d~~i~iwd~~~~--~~~~-------  495 (1106)
                      .|+++|.|-+|++|+...+. -.+..++..|.+.|.|+++ .++..  ++||||.|+.|.+||+.++  +.+.       
T Consensus        87 tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~  163 (735)
T KOG0308|consen   87 TLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVTV  163 (735)
T ss_pred             ceEEecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence            99999999999999998764 2233468889999999999 66666  8999999999999999987  2332       


Q ss_pred             -EEe-ccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEE
Q 001295          496 -IFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  573 (1106)
Q Consensus       496 -~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~  573 (1106)
                       .+. |+...|.+++.  +++|..|++|+..+.+++||.++...+..+.+|...|..+..+.||+               
T Consensus       164 ~sl~sG~k~siYSLA~--N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt---------------  226 (735)
T KOG0308|consen  164 NSLGSGPKDSIYSLAM--NQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGT---------------  226 (735)
T ss_pred             ccCCCCCccceeeeec--CCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCC---------------
Confidence             233 78889999996  45557999999999999999999999999999998888887777776               


Q ss_pred             EcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295          574 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       574 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                            .+++++.||+|++||+...+++.++..|..  .|+++..+|+-..+++|+.||.|..-|+++.
T Consensus       227 ------~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e--~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  227 ------RLLSASSDGTIRLWDLGQQRCLATYIVHKE--GVWALQSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             ------eEeecCCCceEEeeeccccceeeeEEeccC--ceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence                  799999999999999999999999988755  6999999999999999999999999888775

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.95  E-value=1e-26  Score=223.22  Aligned_cols=245  Identities=13%  Similarity=0.223  Sum_probs=201.6

Q ss_pred             cccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecC
Q 001295          742 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  821 (1106)
Q Consensus       742 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~  821 (1106)
                      |...|..+.|.|....|++++.|+++++||+........                  .  ..+   ....+|.++.|.|.
T Consensus       171 H~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA------------------~--K~~---qd~~~vrsiSfHPs  227 (430)
T KOG0640|consen  171 HVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRA------------------F--KVF---QDTEPVRSISFHPS  227 (430)
T ss_pred             ccCcccceeecchhheEEeccCCCeEEEEecccHHHHHH------------------H--HHh---hccceeeeEeecCC
Confidence            889999999999999999999999999999874321100                  0  001   14678999999999


Q ss_pred             CCEEEEEeC-CeEEEEEcCCCceeeee---cCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEec-Ccc-c
Q 001295          822 DSYVMSASG-GKISLFNMMTFKTMATF---MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK-GHS-K  895 (1106)
Q Consensus       822 ~~~l~~~sd-g~i~vwd~~~~~~~~~~---~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~-~h~-~  895 (1106)
                      |.+|++|.| .++++||+.+.++...-   .+|.+.|+++.+|+ .+++.++|+.||.|+|||--+++|+.++. +|. .
T Consensus       228 GefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gs  306 (430)
T KOG0640|consen  228 GEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGS  306 (430)
T ss_pred             CceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCc
Confidence            999999995 78999999998886553   46888999999999 99999999999999999999999998884 464 5


Q ss_pred             CeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCC--CCCCCCCceEEEcCCCcEEEEE--eCCeEEEEe
Q 001295          896 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR--TPTAQSDTRVQFHQDQIHFLVV--HETQLAIFE  971 (1106)
Q Consensus       896 ~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~s~dg~~l~~~--~d~~v~i~d  971 (1106)
                      .|.+..|+.+|+++.|.|.|..+++|++.+++...     ...|.  .....--+...|+....|++.-  ..+.++-||
T Consensus       307 evcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~-----~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWd  381 (430)
T KOG0640|consen  307 EVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLK-----EYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWD  381 (430)
T ss_pred             eeeeEEEccCCeEEeecCCcceeeeeeecCCceEE-----EEecCCcccchhhhhhhhhcCccceEEccccccCceeecc
Confidence            68999999999999999999999999999976533     22222  1101122556788778887773  456899999


Q ss_pred             cCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEc
Q 001295          972 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1016 (1106)
Q Consensus       972 ~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~ 1016 (1106)
                      .+++..+..+.. +|.+.+..+.-||.+.-+++++.|..+|+|--
T Consensus       382 aRtadr~~l~sl-gHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr  425 (430)
T KOG0640|consen  382 ARTADRVALLSL-GHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR  425 (430)
T ss_pred             ccchhhhhhccc-CCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence            999998888775 89999999999999999999999999999963

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=1.8e-26  Score=236.62  Aligned_cols=219  Identities=21%  Similarity=0.299  Sum_probs=164.3

Q ss_pred             cCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCce----eeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcE
Q 001295          408 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI  483 (1106)
Q Consensus       408 ~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~----~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i  483 (1106)
                      +.+|+..|.++++.|.|.+|++|+.|.+|++||+..-..    .+++..  .....|.++.|++.|..+++++|  ...+
T Consensus       163 l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P--~E~h~i~sl~ys~Tg~~iLvvsg--~aqa  238 (641)
T KOG0772|consen  163 LKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQP--CETHQINSLQYSVTGDQILVVSG--SAQA  238 (641)
T ss_pred             ccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCc--ccccccceeeecCCCCeEEEEec--Ccce
Confidence            689999999999999999999999999999999985432    222222  23457999999999996444444  5688


Q ss_pred             EEEeCCCCceeEEE-------------eccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeE-eeCCCCeeE
Q 001295          484 KVWDATNGAKQYIF-------------EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD-YEAPGRWCT  549 (1106)
Q Consensus       484 ~iwd~~~~~~~~~~-------------~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~  549 (1106)
                      +|+| +.|..+..+             +||...++|.+|+|... ..+++++.||++|+||+........ +....    
T Consensus       239 kl~D-RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k-~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~----  312 (641)
T KOG0772|consen  239 KLLD-RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNK-EEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP----  312 (641)
T ss_pred             eEEc-cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcc-cceEEecCCCcEEEEecCCchhheeEEeecc----
Confidence            9999 666554433             58999999999998765 6899999999999999987554332 21110    


Q ss_pred             EEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcce---eEEEccCCCCCCcCeEEEccCCCEEE
Q 001295          550 TMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL---LTSIDADGGLPASPRIRFNKDGCLLA  626 (1106)
Q Consensus       550 ~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~v~~v~~s~~~~~l~  626 (1106)
                                  .+...-.++.++|+++++++++|+.||.|.+|+......   ...-..|.....|+|+.||+||++|+
T Consensus       313 ------------~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~Ll  380 (641)
T KOG0772|consen  313 ------------AGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLL  380 (641)
T ss_pred             ------------CCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhh
Confidence                        011122566777888888999999999999999754322   22223444444899999999999999


Q ss_pred             EEeCCCcEEEEEccCCchhhhh
Q 001295          627 VSTNDNGIKILATSDGIRLLRT  648 (1106)
Q Consensus       627 ~~~~dg~i~iwd~~~~~~~~~~  648 (1106)
                      +-+.|+++++||++...+++..
T Consensus       381 SRg~D~tLKvWDLrq~kkpL~~  402 (641)
T KOG0772|consen  381 SRGFDDTLKVWDLRQFKKPLNV  402 (641)
T ss_pred             hccCCCceeeeeccccccchhh
Confidence            9999999999999877555443

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.95  E-value=1.7e-27  Score=238.12  Aligned_cols=286  Identities=19%  Similarity=0.318  Sum_probs=234.1

Q ss_pred             ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEE
Q 001295          407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  486 (1106)
Q Consensus       407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw  486 (1106)
                      .+..|.+.|..+.|-++...|++|+.|..|++|++..++ .....+|.|-.++|+.+.|.++++  .+++.+.|+.+++|
T Consensus       170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~W  246 (459)
T KOG0288|consen  170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLW  246 (459)
T ss_pred             hhhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeee
Confidence            367899999999999999999999999999999998776 334457888899999999999999  79999999999999


Q ss_pred             eCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeec
Q 001295          487 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  566 (1106)
Q Consensus       487 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  566 (1106)
                      ++...+...+|.||++.|+++.|.-..  ..+++|+.|.+|+.||+....+..++.. ...+..+..+            
T Consensus       247 nvd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~------------  311 (459)
T KOG0288|consen  247 NVDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS------------  311 (459)
T ss_pred             eccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheeccccc-cccccceEec------------
Confidence            999999999999999999999986554  3499999999999999998655443321 1222222222            


Q ss_pred             cceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhh
Q 001295          567 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL  646 (1106)
Q Consensus       567 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  646 (1106)
                                 ...+++|-.|+.|++||+++..+......++   .|+++..+++|..+.+.+.|.++.+.|+++. ...
T Consensus       312 -----------~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg---~vtSl~ls~~g~~lLsssRDdtl~viDlRt~-eI~  376 (459)
T KOG0288|consen  312 -----------ISDVISGHFDKKVRFWDIRSADKTRSVPLGG---RVTSLDLSMDGLELLSSSRDDTLKVIDLRTK-EIR  376 (459)
T ss_pred             -----------ceeeeecccccceEEEeccCCceeeEeecCc---ceeeEeeccCCeEEeeecCCCceeeeecccc-cEE
Confidence                       1247788899999999999999999988765   5999999999999999999999999998765 111


Q ss_pred             hhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCC
Q 001295          647 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL  726 (1106)
Q Consensus       647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~  726 (1106)
                      .                                                                               
T Consensus       377 ~-------------------------------------------------------------------------------  377 (459)
T KOG0288|consen  377 Q-------------------------------------------------------------------------------  377 (459)
T ss_pred             E-------------------------------------------------------------------------------
Confidence            1                                                                               


Q ss_pred             CCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCC
Q 001295          727 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  806 (1106)
Q Consensus       727 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  806 (1106)
                                             .|+..+.                                                  
T Consensus       378 -----------------------~~sA~g~--------------------------------------------------  384 (459)
T KOG0288|consen  378 -----------------------TFSAEGF--------------------------------------------------  384 (459)
T ss_pred             -----------------------Eeecccc--------------------------------------------------
Confidence                                   1111110                                                  


Q ss_pred             CCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCC--CeeEEEEecCCCceEEEeeCCCcEEEE
Q 001295          807 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPP--AATFLAFHPQDNNIIAIGMDDSSIQIY  879 (1106)
Q Consensus       807 ~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~--~v~~l~~s~~d~~~la~g~~dg~v~iw  879 (1106)
                       ......+.+.|||++.|+++|+ ||.|+||++.++++...+.....  .|++++|+| .|..|++++.++.+.+|
T Consensus       385 -k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~-sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  385 -KCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNP-SGSGLLSADKQKAVTLW  458 (459)
T ss_pred             -ccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcC-CCchhhcccCCcceEec
Confidence             0123367889999999999999 99999999999999888765544  599999999 89999999999999999

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=3.6e-25  Score=215.52  Aligned_cols=254  Identities=15%  Similarity=0.254  Sum_probs=210.4

Q ss_pred             CCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeC--CCcEEEEEeecce
Q 001295          809 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD--DSSIQIYNVRVDE  885 (1106)
Q Consensus       809 ~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~--dg~v~iwd~~~~~  885 (1106)
                      ....|.++.|+++|.++++++ |.+|++||..+++.++++..+.-.+..++|.. ....+..++.  |.+|+.-++.+.+
T Consensus        13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth-~~~~~i~sStk~d~tIryLsl~dNk   91 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTH-HSNTVIHSSTKEDDTIRYLSLHDNK   91 (311)
T ss_pred             CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEec-CCceEEEccCCCCCceEEEEeecCc
Confidence            477899999999999999988 78999999999999999998888899999988 4555555655  8899999999999


Q ss_pred             EEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeC-
Q 001295          886 VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE-  964 (1106)
Q Consensus       886 ~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d-  964 (1106)
                      .++.|.||...|++|+.+|-+..++|++.|++|++||++..++...  +...        .-..++|.|+|-++|++.+ 
T Consensus        92 ylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~--l~~~--------~~pi~AfDp~GLifA~~~~~  161 (311)
T KOG1446|consen   92 YLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL--LNLS--------GRPIAAFDPEGLIFALANGS  161 (311)
T ss_pred             eEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE--EecC--------CCcceeECCCCcEEEEecCC
Confidence            9999999999999999999999999999999999999997554332  2111        2357899999999999644 


Q ss_pred             CeEEEEecCCc--eEeeecccC-CCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCcc
Q 001295          965 TQLAIFETTKL--ECVKQWVPR-ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVH 1041 (1106)
Q Consensus       965 ~~v~i~d~~~~--~~~~~~~~~-~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 1041 (1106)
                      +.|++||++.-  .....+... +-...++.|.|||||++|+.+...+.+++.|.-+|..+..+.       ++....-.
T Consensus       162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs-------~~~~~~~~  234 (311)
T KOG1446|consen  162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFS-------GYPNAGNL  234 (311)
T ss_pred             CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEe-------eccCCCCc
Confidence            49999999874  233333332 346789999999999999999999999999999999888877       22233345


Q ss_pred             ceEEEEeCCCCCEEEEEeCCCcEEEEeecCCCCccCCCCC
Q 001295         1042 PLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPP 1081 (1106)
Q Consensus      1042 ~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~~~~~~~~~ 1081 (1106)
                      ++..+|+| |++++++|+.||+|.+|+++++........|
T Consensus       235 ~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~  273 (311)
T KOG1446|consen  235 PLSATFTP-DSKFVLSGSDDGTIHVWNLETGKKVAVLRGP  273 (311)
T ss_pred             ceeEEECC-CCcEEEEecCCCcEEEEEcCCCcEeeEecCC
Confidence            57899999 7999999999999999999999944443333

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=2.1e-25  Score=250.89  Aligned_cols=264  Identities=16%  Similarity=0.208  Sum_probs=201.2

Q ss_pred             cceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEec-CC
Q 001295          744 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-ND  822 (1106)
Q Consensus       744 ~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~  822 (1106)
                      ..|....+++++..++++..+.....|+...+.            ..++....|+.......-.+|...|.+++|+| ++
T Consensus        21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~------------~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~   88 (493)
T PTZ00421         21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGST------------AVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDP   88 (493)
T ss_pred             eccccccccCCCCCcEeECCceEEEEEecCCce------------EEeeccccccCCCCCceEeCCCCCEEEEEEcCCCC
Confidence            445556677787778888888888888754321            12333334443321111124999999999999 88


Q ss_pred             CEEEEEe-CCeEEEEEcCCC-------ceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcc
Q 001295          823 SYVMSAS-GGKISLFNMMTF-------KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS  894 (1106)
Q Consensus       823 ~~l~~~s-dg~i~vwd~~~~-------~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~  894 (1106)
                      ++|++++ |++|++||+.++       ..+..+.+|...|.+++|+|.++.+|++|+.|+.|+|||+.+++.+..+.+|.
T Consensus        89 ~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~  168 (493)
T PTZ00421         89 QKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHS  168 (493)
T ss_pred             CEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCC
Confidence            9999999 899999999764       34667889999999999999445799999999999999999999999999999


Q ss_pred             cCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-E----eCCeEEE
Q 001295          895 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V----HETQLAI  969 (1106)
Q Consensus       895 ~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~----~d~~v~i  969 (1106)
                      ..|++++|+|+|.+|++++.|++|++||+.+++.     +....+|..  .....+.|.+++..+++ +    .|+.|++
T Consensus       169 ~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~-----v~tl~~H~~--~~~~~~~w~~~~~~ivt~G~s~s~Dr~Vkl  241 (493)
T PTZ00421        169 DQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI-----VSSVEAHAS--AKSQRCLWAKRKDLIITLGCSKSQQRQIML  241 (493)
T ss_pred             CceEEEEEECCCCEEEEecCCCEEEEEECCCCcE-----EEEEecCCC--CcceEEEEcCCCCeEEEEecCCCCCCeEEE
Confidence            9999999999999999999999999999998653     222334432  12356788998877776 3    3689999


Q ss_pred             EecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEE-cCCeEEEEEcCCceeEEeeC
Q 001295          970 FETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus       970 ~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s-~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
                      ||+++...........+...+....|++|+.+|++++ .|+.|++||+.+++.+....
T Consensus       242 WDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~  299 (493)
T PTZ00421        242 WDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSS  299 (493)
T ss_pred             EeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEee
Confidence            9998765322221112345667778999999998887 59999999999998876654

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=6.5e-26  Score=255.43  Aligned_cols=309  Identities=19%  Similarity=0.264  Sum_probs=229.7

Q ss_pred             CCCCcEEEEEecCCCeEEEEEe--ccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCE
Q 001295          349 QGSSPMSMDFHPVQQTLLLVGT--NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  426 (1106)
Q Consensus       349 h~~~v~~~~~sp~g~~llatg~--~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~  426 (1106)
                      ++..|..++.+|||.. +|||+  .||.++||+.+.--.    ....++..   .+.....+..|.+.|.|+.|||||+|
T Consensus        12 ~~~~IfSIdv~pdg~~-~aTgGq~~d~~~~iW~~~~vl~----~~~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~~   83 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVK-FATGGQVLDGGIVIWSQDPVLD----EKEEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGSY   83 (942)
T ss_pred             CCeeEEEEEecCCcee-EecCCccccccceeeccccccc----hhhhhhcc---cchhheeeccccCceeEEEECCCCCe
Confidence            4567999999999995 99999  899999999753110    00111111   23333457899999999999999999


Q ss_pred             EEEEeCCCeEEEEEccC----------C-----ceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCC
Q 001295          427 FGVAYSRHIVQIYSYHG----------G-----DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG  491 (1106)
Q Consensus       427 las~~~d~~v~iwd~~~----------~-----~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~  491 (1106)
                      ||+|++|+.|.||....          |     +..+....+.+|...|..++|+|++.  ++++++.|++|.|||..+.
T Consensus        84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF  161 (942)
T KOG0973|consen   84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTF  161 (942)
T ss_pred             EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccc
Confidence            99999999999999872          0     11235567899999999999999999  8999999999999999999


Q ss_pred             ceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeE
Q 001295          492 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV  571 (1106)
Q Consensus       492 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~  571 (1106)
                      +.+.++.+|.+.|..+.|.|  -|++|++-+.|++|++|++.+.+....+..+-..+      +-.         ..+..
T Consensus       162 ~~~~vl~~H~s~VKGvs~DP--~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~------~~~---------T~f~R  224 (942)
T KOG0973|consen  162 ELLKVLRGHQSLVKGVSWDP--IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEES------PLT---------TFFLR  224 (942)
T ss_pred             eeeeeeecccccccceEECC--ccCeeeeecCCceEEEEEcccceeeEeeccchhhC------CCc---------ceeee
Confidence            99999999999999999855  55899999999999999977655544444332210      001         13344


Q ss_pred             EEEcCCCCEEEEE----ECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccC-----CC------------EEEEEeC
Q 001295          572 VQFDTTKNRFLAA----GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD-----GC------------LLAVSTN  630 (1106)
Q Consensus       572 ~~~~~~~~~l~~~----~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~-----~~------------~l~~~~~  630 (1106)
                      +.|+|||.+|++.    +.-..+.|.+-.+.+.-..+-+|.  .++.++.|+|.     .+            .+|+|+.
T Consensus       225 lSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~--~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSq  302 (942)
T KOG0973|consen  225 LSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHS--APVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQ  302 (942)
T ss_pred             cccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCC--CceEEEEeChHHhccccccCCccCCCcceEEEEEecC
Confidence            5566666677763    234578888887777777777664  48999999982     11            4566666


Q ss_pred             CCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccc
Q 001295          631 DNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRI  710 (1106)
Q Consensus       631 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  710 (1106)
                      |++|.||..... +++..                                                              
T Consensus       303 DrSlSVW~T~~~-RPl~v--------------------------------------------------------------  319 (942)
T KOG0973|consen  303 DRSLSVWNTALP-RPLFV--------------------------------------------------------------  319 (942)
T ss_pred             CccEEEEecCCC-Cchhh--------------------------------------------------------------
Confidence            777777765333 11111                                                              


Q ss_pred             cccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccc
Q 001295          711 TEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTE  776 (1106)
Q Consensus       711 ~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  776 (1106)
                                           +.      ......|.+++|+|||..|++++.||+|.+..++..+
T Consensus       320 ---------------------i~------~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E  358 (942)
T KOG0973|consen  320 ---------------------IH------NLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE  358 (942)
T ss_pred             ---------------------hh------hhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence                                 11      1245689999999999999999999999999987653

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.95  E-value=1.4e-25  Score=229.00  Aligned_cols=255  Identities=15%  Similarity=0.224  Sum_probs=200.3

Q ss_pred             ceeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEc
Q 001295          342 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  421 (1106)
Q Consensus       342 ~~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s  421 (1106)
                      +...++.|+.-|.++++|...++ +.||+. |.|+|||+......              .+....-.....+.|..+.++
T Consensus       411 rq~~tL~HGEvVcAvtIS~~trh-VyTgGk-gcVKVWdis~pg~k--------------~PvsqLdcl~rdnyiRSckL~  474 (705)
T KOG0639|consen  411 RQINTLAHGEVVCAVTISNPTRH-VYTGGK-GCVKVWDISQPGNK--------------SPVSQLDCLNRDNYIRSCKLL  474 (705)
T ss_pred             HhhhhhccCcEEEEEEecCCcce-eEecCC-CeEEEeeccCCCCC--------------CccccccccCcccceeeeEec
Confidence            45667889999999999999997 888885 89999999754221              111111123346689999999


Q ss_pred             cCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccC
Q 001295          422 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE  501 (1106)
Q Consensus       422 pdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~  501 (1106)
                      |||+.|++|+.-.++.|||+..... +....+..-.-..++++.+||.+  +.+++..||.|.|||+.+...++.|+||.
T Consensus       475 pdgrtLivGGeastlsiWDLAapTp-rikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGht  551 (705)
T KOG0639|consen  475 PDGRTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHT  551 (705)
T ss_pred             CCCceEEeccccceeeeeeccCCCc-chhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCC
Confidence            9999999999999999999987543 21123444445688899999999  88999999999999999999999999999


Q ss_pred             CCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEE
Q 001295          502 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF  581 (1106)
Q Consensus       502 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l  581 (1106)
                      +.+.||.++  .+|..|.+|+-|++||.||++++..+...... .                     .|.++.++|++.++
T Consensus       552 DGascIdis--~dGtklWTGGlDntvRcWDlregrqlqqhdF~-S---------------------QIfSLg~cP~~dWl  607 (705)
T KOG0639|consen  552 DGASCIDIS--KDGTKLWTGGLDNTVRCWDLREGRQLQQHDFS-S---------------------QIFSLGYCPTGDWL  607 (705)
T ss_pred             CCceeEEec--CCCceeecCCCccceeehhhhhhhhhhhhhhh-h---------------------hheecccCCCccce
Confidence            999999974  56678999999999999999987765543221 1                     34445566666799


Q ss_pred             EEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295          582 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       582 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                      +.|-+.+.+.+..... .....+..|  ...|.++.|.+.|+++++.+.|+.+..|...-|
T Consensus       608 avGMens~vevlh~sk-p~kyqlhlh--eScVLSlKFa~cGkwfvStGkDnlLnawrtPyG  665 (705)
T KOG0639|consen  608 AVGMENSNVEVLHTSK-PEKYQLHLH--ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG  665 (705)
T ss_pred             eeecccCcEEEEecCC-ccceeeccc--ccEEEEEEecccCceeeecCchhhhhhccCccc
Confidence            9999999998887643 333344333  557999999999999999999999999977655

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=2e-25  Score=214.49  Aligned_cols=246  Identities=18%  Similarity=0.229  Sum_probs=194.2

Q ss_pred             CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCc-ceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEE
Q 001295          349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR-ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF  427 (1106)
Q Consensus       349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l  427 (1106)
                      -.+.|.+++|||....+++.||-||+|++|+++.. ....                  .....|.++|.+++|+.||..+
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v~WsddgskV   87 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDDGSKV   87 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEEEEccCCceE
Confidence            56899999999976668889999999999999863 3222                  1357899999999999999999


Q ss_pred             EEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEE
Q 001295          428 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV  507 (1106)
Q Consensus       428 as~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  507 (1106)
                      ++|+.|+.+++||+.+++..    .+..|.++|.++.|-+...+..|+||+.|++|+.||.+...++.++. -.+.+.++
T Consensus        88 f~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~  162 (347)
T KOG0647|consen   88 FSGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAA  162 (347)
T ss_pred             EeeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeeh
Confidence            99999999999999998644    36789999999999887665589999999999999999999998887 45677777


Q ss_pred             eccccCCceEEEEEecCCeEEEEeCCCCCceeE-eeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEEC
Q 001295          508 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD-YEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD  586 (1106)
Q Consensus       508 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  586 (1106)
                      ..-  .  .+++.+..++.|.+|++++...... ...+..                    -.+++++...+....+.|+-
T Consensus       163 Dv~--~--pm~vVata~r~i~vynL~n~~te~k~~~SpLk--------------------~Q~R~va~f~d~~~~alGsi  218 (347)
T KOG0647|consen  163 DVL--Y--PMAVVATAERHIAVYNLENPPTEFKRIESPLK--------------------WQTRCVACFQDKDGFALGSI  218 (347)
T ss_pred             hcc--C--ceeEEEecCCcEEEEEcCCCcchhhhhcCccc--------------------ceeeEEEEEecCCceEeeee
Confidence            642  2  4789999999999999976543321 111111                    13444555555556799999


Q ss_pred             CCeEEEEECCCc--ceeEEEccCCC-------CCCcCeEEEccCCCEEEEEeCCCcEEEEEccC
Q 001295          587 DFSIKFWDMDSV--QLLTSIDADGG-------LPASPRIRFNKDGCLLAVSTNDNGIKILATSD  641 (1106)
Q Consensus       587 d~~i~iwd~~~~--~~~~~~~~~~~-------~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~  641 (1106)
                      +|.+-+..++.+  +.-.+|+.|..       .-.|++++|+|.-..|++++.||++.+||-..
T Consensus       219 EGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkda  282 (347)
T KOG0647|consen  219 EGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDA  282 (347)
T ss_pred             cceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchh
Confidence            999999999886  44455555542       22477899999989999999999999999644

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=5.2e-26  Score=233.34  Aligned_cols=310  Identities=21%  Similarity=0.278  Sum_probs=229.8

Q ss_pred             CCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccc
Q 001295          609 GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAA  688 (1106)
Q Consensus       609 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  688 (1106)
                      +...|.++++.|.|..|++|+.|.+|++||+.......+.++.                                     
T Consensus       166 gtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~-------------------------------------  208 (641)
T KOG0772|consen  166 GTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQ-------------------------------------  208 (641)
T ss_pred             CceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhc-------------------------------------
Confidence            3567999999999999999999999999998754322222210                                     


Q ss_pred             cccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEE
Q 001295          689 SMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHL  768 (1106)
Q Consensus       689 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  768 (1106)
                                                                    +.   ......|.++.|++.|..|++.+.....+
T Consensus       209 ----------------------------------------------l~---P~E~h~i~sl~ys~Tg~~iLvvsg~aqak  239 (641)
T KOG0772|consen  209 ----------------------------------------------LQ---PCETHQINSLQYSVTGDQILVVSGSAQAK  239 (641)
T ss_pred             ----------------------------------------------cC---cccccccceeeecCCCCeEEEEecCccee
Confidence                                                          00   11346789999999999999999999999


Q ss_pred             EeeccccccCCCCccccccCccccCCCCCCcccccc-CCCCCCCCeeEEEEecCCC-EEEEEe-CCeEEEEEcCCCcee-
Q 001295          769 LWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV-TDSNPEEAVPCFALSKNDS-YVMSAS-GGKISLFNMMTFKTM-  844 (1106)
Q Consensus       769 iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~-~~~~~~~~v~~l~~s~~~~-~l~~~s-dg~i~vwd~~~~~~~-  844 (1106)
                      |+|-....              +-....|......+ ...+|...++|.+|+|+.+ .+++++ ||++||||+...+.. 
T Consensus       240 l~DRdG~~--------------~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~  305 (641)
T KOG0772|consen  240 LLDRDGFE--------------IVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQL  305 (641)
T ss_pred             EEccCCce--------------eeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhe
Confidence            99865321              11122222211111 1124889999999999775 555666 999999999864432 


Q ss_pred             eeec-----CCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecce---EEEEecCccc--CeeEEEEecCCCEEEEEcC
Q 001295          845 ATFM-----PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE---VKSKLKGHSK--RITGLAFSHALNVLVSSGA  914 (1106)
Q Consensus       845 ~~~~-----~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~---~~~~l~~h~~--~V~~l~~s~d~~~l~s~s~  914 (1106)
                      ..+.     +..-.++.++|++ |+++||.|+.||+|.+|+..+..   ....-++|..  .|+||.||+||++|+|-|.
T Consensus       306 qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~  384 (641)
T KOG0772|consen  306 QVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGF  384 (641)
T ss_pred             eEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccC
Confidence            2222     2344689999999 99999999999999999975432   2234467877  8999999999999999999


Q ss_pred             CCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEe-------CCeEEEEecCCceEeeecccCCCC
Q 001295          915 DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH-------ETQLAIFETTKLECVKQWVPRESS  987 (1106)
Q Consensus       915 Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~-------d~~v~i~d~~~~~~~~~~~~~~h~  987 (1106)
                      |+++++||++..+..    +....+-.. ...-+.++|||+.++|++|.       .+.+.+||..+.+.+..+...  .
T Consensus       385 D~tLKvWDLrq~kkp----L~~~tgL~t-~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~--~  457 (641)
T KOG0772|consen  385 DDTLKVWDLRQFKKP----LNVRTGLPT-PFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS--T  457 (641)
T ss_pred             CCceeeeeccccccc----hhhhcCCCc-cCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC--C
Confidence            999999999986543    333332211 12458899999999999842       367999999999998887754  7


Q ss_pred             CCeeEEEECCCCCEEEEEEcCCeEEEEEcC----CceeEEeeC
Q 001295          988 APITHATFSCDSQLVYACFLDATVCVFSAA----NLKLRCRIN 1026 (1106)
Q Consensus       988 ~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~----~~~~~~~~~ 1026 (1106)
                      ..|..+.|.|.=+.|.+|+.||+++||--.    .|..+|...
T Consensus       458 aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~~S~RGak~cv~k  500 (641)
T KOG0772|consen  458 ASVVRCLWHPKLNQIFAGSGDGTAHVYYDPNESIRGAKLCVVK  500 (641)
T ss_pred             ceEEEEeecchhhheeeecCCCceEEEECccccccchhheeec
Confidence            789999999998889999999999998433    345555554

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=7.2e-26  Score=217.86  Aligned_cols=253  Identities=16%  Similarity=0.315  Sum_probs=216.4

Q ss_pred             cceeeecc-CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEE
Q 001295          341 KTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI  419 (1106)
Q Consensus       341 ~~~~~~~~-h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~  419 (1106)
                      .++.+.+. |++.||.++...... ++.+++.|.+.+||.+++|.++..                   +.||.+.|+++.
T Consensus       138 ~~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH~GSVNsik  197 (481)
T KOG0300|consen  138 FRLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLAT-------------------YTGHTGSVNSIK  197 (481)
T ss_pred             EeehhhhcccccceeeehhhcCCc-ceeecccccceeEEeeccccceee-------------------ecccccceeeEE
Confidence            34444454 999999999988777 799999999999999999999985                   799999999999


Q ss_pred             EccCCCEEEEEeCCCeEEEEEc------cC--------C-----------------------ceeeeeeeeccccCCeeE
Q 001295          420 WSPDGSLFGVAYSRHIVQIYSY------HG--------G-----------------------DEVRQHLEIDAHVGGVND  462 (1106)
Q Consensus       420 ~spdg~~las~~~d~~v~iwd~------~~--------~-----------------------~~~~~~~~l~~h~~~V~~  462 (1106)
                      |++.+.++++++.|++..||..      ..        +                       ..-.++..|.+|.+.|.+
T Consensus       198 fh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a  277 (481)
T KOG0300|consen  198 FHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA  277 (481)
T ss_pred             eccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence            9999999999999999999972      11        0                       001235678899999999


Q ss_pred             EEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCC-CceeEe
Q 001295          463 IAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDY  541 (1106)
Q Consensus       463 ~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~  541 (1106)
                      ..|...|+  .+++++.|.+..+||+++|..+..+.||....+.++-+|..  +++++.+.|.+.++||++.. ..+..|
T Consensus       278 ~dWL~gg~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ--rLVvTsSrDtTFRLWDFReaI~sV~VF  353 (481)
T KOG0300|consen  278 CDWLAGGQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ--RLVVTSSRDTTFRLWDFREAIQSVAVF  353 (481)
T ss_pred             hhhhcCcc--eeeeeeccccceeeeeccCceeccccCcchhccccccCCcc--eEEEEeccCceeEeccchhhcceeeee
Confidence            99999999  69999999999999999999999999999999999877665  79999999999999999853 334478


Q ss_pred             eCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcc-eeEEEccCCCCCCcCeEEEcc
Q 001295          542 EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNK  620 (1106)
Q Consensus       542 ~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~v~~v~~s~  620 (1106)
                      .+|...|++..|..+.+                      +++|+.|.+|++||+++.+ ++.++...   ..++.++.+.
T Consensus       354 QGHtdtVTS~vF~~dd~----------------------vVSgSDDrTvKvWdLrNMRsplATIRtd---S~~NRvavs~  408 (481)
T KOG0300|consen  354 QGHTDTVTSVVFNTDDR----------------------VVSGSDDRTVKVWDLRNMRSPLATIRTD---SPANRVAVSK  408 (481)
T ss_pred             cccccceeEEEEecCCc----------------------eeecCCCceEEEeeeccccCcceeeecC---CccceeEeec
Confidence            88999999999988886                      9999999999999998753 56666543   3588899999


Q ss_pred             CCCEEEEEeCCCcEEEEEccCC
Q 001295          621 DGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       621 ~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                      .+..++.--++..|++||+...
T Consensus       409 g~~iIAiPhDNRqvRlfDlnG~  430 (481)
T KOG0300|consen  409 GHPIIAIPHDNRQVRLFDLNGN  430 (481)
T ss_pred             CCceEEeccCCceEEEEecCCC
Confidence            9999999999999999998654

>PTZ00421 coronin; Provisional

Probab=99.94  E-value=5e-25  Score=247.87  Aligned_cols=263  Identities=13%  Similarity=0.125  Sum_probs=197.1

Q ss_pred             CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc-CCCEE
Q 001295          349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLF  427 (1106)
Q Consensus       349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l  427 (1106)
                      |-..|....+++|+.. +++++.+.....|+...+..+..      ....+..+.....+.+|.+.|.+++|+| ++++|
T Consensus        19 ~~~~i~~~~~~~d~~~-~~~~n~~~~a~~w~~~gg~~v~~------~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~L   91 (493)
T PTZ00421         19 HFLNVTPSTALWDCSN-TIACNDRFIAVPWQQLGSTAVLK------HTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKL   91 (493)
T ss_pred             ceeccccccccCCCCC-cEeECCceEEEEEecCCceEEee------ccccccCCCCCceEeCCCCCEEEEEEcCCCCCEE
Confidence            4466778888889774 66777778888998765532211      1111111112235789999999999999 89999


Q ss_pred             EEEeCCCeEEEEEccCCce----eeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCC
Q 001295          428 GVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP  503 (1106)
Q Consensus       428 as~~~d~~v~iwd~~~~~~----~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~  503 (1106)
                      |+|+.|++|+|||+.++..    ...+..+.+|...|.+++|+|++.. +|++|+.|++|+|||+.+++.+..+.+|...
T Consensus        92 aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~  170 (493)
T PTZ00421         92 FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQ  170 (493)
T ss_pred             EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCc
Confidence            9999999999999986532    1234468899999999999998744 7999999999999999999999999999999


Q ss_pred             eEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEE
Q 001295          504 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA  583 (1106)
Q Consensus       504 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  583 (1106)
                      |.+++|++  ++.+|++++.|+.|++||++++.....+..|....                    ...+.|.+++..+++
T Consensus       171 V~sla~sp--dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~--------------------~~~~~w~~~~~~ivt  228 (493)
T PTZ00421        171 ITSLEWNL--DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAK--------------------SQRCLWAKRKDLIIT  228 (493)
T ss_pred             eEEEEEEC--CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCc--------------------ceEEEEcCCCCeEEE
Confidence            99999976  45799999999999999999877666665554321                    122334444445665


Q ss_pred             EE----CCCeEEEEECCCcc-eeEEEccCCCCCCcCeEEEccCCCEEEEEe-CCCcEEEEEccCC
Q 001295          584 AG----DDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDG  642 (1106)
Q Consensus       584 ~~----~d~~i~iwd~~~~~-~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~  642 (1106)
                      ++    .|+.|++||+++.. .+.....+. ...+....|++++++|++++ .|+.|++||+.++
T Consensus       229 ~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~-~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~  292 (493)
T PTZ00421        229 LGCSKSQQRQIMLWDTRKMASPYSTVDLDQ-SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE  292 (493)
T ss_pred             EecCCCCCCeEEEEeCCCCCCceeEeccCC-CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence            43    47999999998754 333333222 23455567899999999887 5999999999887

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=7e-26  Score=243.08  Aligned_cols=260  Identities=16%  Similarity=0.260  Sum_probs=219.3

Q ss_pred             CCCCCCCCCcceeeecc-CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCC
Q 001295          332 AFSTPEDLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD  410 (1106)
Q Consensus       332 ~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  410 (1106)
                      .+|-.+.....+..+.. +.+.|+++.|+++|.+ ||+|..+|.|.|||..+.+.+..                   +.+
T Consensus       198 ~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~-LavG~~~g~v~iwD~~~~k~~~~-------------------~~~  257 (484)
T KOG0305|consen  198 SVYLWSASSGSVTELCSFGEELVTSVKWSPDGSH-LAVGTSDGTVQIWDVKEQKKTRT-------------------LRG  257 (484)
T ss_pred             eEEEEecCCCceEEeEecCCCceEEEEECCCCCE-EEEeecCCeEEEEehhhcccccc-------------------ccC
Confidence            34444555555555555 5899999999999996 99999999999999988877653                   455


Q ss_pred             -CCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCC
Q 001295          411 -PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT  489 (1106)
Q Consensus       411 -h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~  489 (1106)
                       |...|-+++|+  +..+.+|+.|+.|..+|+...+....  ++.+|...|..+.|++|+.  ++++|+.|+.+.|||..
T Consensus       258 ~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~--~lASGgnDN~~~Iwd~~  331 (484)
T KOG0305|consen  258 SHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDGN--QLASGGNDNVVFIWDGL  331 (484)
T ss_pred             CcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCCC--eeccCCCccceEeccCC
Confidence             99999999998  77899999999999999998776543  4889999999999999999  89999999999999998


Q ss_pred             CCceeEEEeccCCCeEEEeccccCCceEEEEEec--CCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeecc
Q 001295          490 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR  567 (1106)
Q Consensus       490 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~  567 (1106)
                      ...++..+..|.+.|.+++|+|-.. .+||+|+.  |++|++||..++..+.... .+..|.++.|++..+         
T Consensus       332 ~~~p~~~~~~H~aAVKA~awcP~q~-~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~k---------  400 (484)
T KOG0305|consen  332 SPEPKFTFTEHTAAVKALAWCPWQS-GLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYK---------  400 (484)
T ss_pred             CccccEEEeccceeeeEeeeCCCcc-CceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCC---------
Confidence            8899999999999999999998876 48888764  9999999999766655443 344577777777665         


Q ss_pred             ceeEEEEcCCCCEEEE--EECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295          568 SLGVVQFDTTKNRFLA--AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       568 ~i~~~~~~~~~~~l~~--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                                  .+++  |..++.|.||+..+.+.+..+.+|.  ..|..++++|||..+++|+.|.++++|++-+.
T Consensus       401 ------------Ei~sthG~s~n~i~lw~~ps~~~~~~l~gH~--~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  401 ------------ELLSTHGYSENQITLWKYPSMKLVAELLGHT--SRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             ------------EEEEecCCCCCcEEEEeccccceeeeecCCc--ceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence                        4554  5568899999999999999998774  47999999999999999999999999988664

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.5e-24  Score=198.75  Aligned_cols=308  Identities=14%  Similarity=0.134  Sum_probs=226.8

Q ss_pred             cccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecC
Q 001295          742 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  821 (1106)
Q Consensus       742 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~  821 (1106)
                      ....|.+++|.|.|...+++++..+++|.....-..-..+...+..        ...++.  .....|.+.|.|.+|+|+
T Consensus        31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~--------pp~v~~--kr~khhkgsiyc~~ws~~  100 (350)
T KOG0641|consen   31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQ--------PPSVLC--KRNKHHKGSIYCTAWSPC  100 (350)
T ss_pred             chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccC--------CCeEEe--eeccccCccEEEEEecCc
Confidence            5678999999999999999999999998765421100000000000        000111  111238899999999999


Q ss_pred             CCEEEEEe-CCeEEEEEcCCCcee-----eeecCCCCCeeEEEEecC---CCceEEEee-CCCcEEEEEeecceEEEEec
Q 001295          822 DSYVMSAS-GGKISLFNMMTFKTM-----ATFMPPPPAATFLAFHPQ---DNNIIAIGM-DDSSIQIYNVRVDEVKSKLK  891 (1106)
Q Consensus       822 ~~~l~~~s-dg~i~vwd~~~~~~~-----~~~~~~~~~v~~l~~s~~---d~~~la~g~-~dg~v~iwd~~~~~~~~~l~  891 (1106)
                      |++|++|+ |.+|++..+....+.     .++.-|.+.|..++|-.+   ++.+|++++ .|..|++-|...|+....+.
T Consensus       101 geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s  180 (350)
T KOG0641|consen  101 GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS  180 (350)
T ss_pred             cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec
Confidence            99999999 889998776543332     346779999999999752   356788765 57788888999999999999


Q ss_pred             CcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeEEEE
Q 001295          892 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIF  970 (1106)
Q Consensus       892 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v~i~  970 (1106)
                      ||++.|.++ ++-+|-+++||+.|.+|++||+.-....... -....+.......|.+++..|.|++|+++ .|..-.+|
T Consensus       181 ghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l-~~~~~~~glessavaav~vdpsgrll~sg~~dssc~ly  258 (350)
T KOG0641|consen  181 GHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTL-DNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLY  258 (350)
T ss_pred             CCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeec-cCcccCCCcccceeEEEEECCCcceeeeccCCCceEEE
Confidence            999999887 3446889999999999999999864332211 11112222223578999999999999997 78889999


Q ss_pred             ecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCC
Q 001295          971 ETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ 1050 (1106)
Q Consensus       971 d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 1050 (1106)
                      |++.++.+..+.  .|+..|.|+.|||...||++++.|..|++-|++. .+-..+..  .....|....|   .+.|+|.
T Consensus       259 dirg~r~iq~f~--phsadir~vrfsp~a~yllt~syd~~ikltdlqg-dla~el~~--~vv~ehkdk~i---~~rwh~~  330 (350)
T KOG0641|consen  259 DIRGGRMIQRFH--PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG-DLAHELPI--MVVAEHKDKAI---QCRWHPQ  330 (350)
T ss_pred             EeeCCceeeeeC--CCccceeEEEeCCCceEEEEecccceEEEeeccc-chhhcCce--EEEEeccCceE---EEEecCc
Confidence            999999999987  7899999999999999999999999999999864 33222221  11122334433   5999996


Q ss_pred             CCCEEEEEeCCCcEEEEeec
Q 001295         1051 EPNEFALGLSDGGVHVFEPL 1070 (1106)
Q Consensus      1051 d~~~l~t~~~Dg~v~vW~~~ 1070 (1106)
                      | -.+++.+.|.++.+|-+.
T Consensus       331 d-~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  331 D-FSFISSSADKTATLWALN  349 (350)
T ss_pred             c-ceeeeccCcceEEEeccC
Confidence            4 567888899999999764

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=4.6e-25  Score=213.30  Aligned_cols=239  Identities=21%  Similarity=0.227  Sum_probs=202.2

Q ss_pred             CCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCc--eEEEeeCCCcEEEEEeecc
Q 001295          808 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN--IIAIGMDDSSIQIYNVRVD  884 (1106)
Q Consensus       808 ~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~--~la~g~~dg~v~iwd~~~~  884 (1106)
                      .|...|+++++  ++.++|+|+ |.+|+|||+.....+..+-.|.+.|+++.|.+ +..  .|++|++||.|.+|+..+.
T Consensus        41 aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~W  117 (362)
T KOG0294|consen   41 AHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGSW  117 (362)
T ss_pred             ccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcCCe
Confidence            49999999998  689999999 99999999999999999999999999999998 543  8999999999999999999


Q ss_pred             eEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeC
Q 001295          885 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE  964 (1106)
Q Consensus       885 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d  964 (1106)
                      .++..+++|.+.|+.++.+|.|++-.+.+.|+.+++||+-+|+......+..         ..+.+.|+|.|.+++++..
T Consensus       118 ~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~---------~at~v~w~~~Gd~F~v~~~  188 (362)
T KOG0294|consen  118 ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN---------KATLVSWSPQGDHFVVSGR  188 (362)
T ss_pred             EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC---------cceeeEEcCCCCEEEEEec
Confidence            9999999999999999999999999999999999999999887544322221         2356999999999999999


Q ss_pred             CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceE
Q 001295          965 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLV 1044 (1106)
Q Consensus       965 ~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1044 (1106)
                      ..|-+|.+.+......+..   ...+.|+.|- ++.+|++|.+|+.|.+||.+++...+.+.       +|... |.  .
T Consensus       189 ~~i~i~q~d~A~v~~~i~~---~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~-------AH~~R-VK--~  254 (362)
T KOG0294|consen  189 NKIDIYQLDNASVFREIEN---PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFL-------AHENR-VK--D  254 (362)
T ss_pred             cEEEEEecccHhHhhhhhc---cccceeeeec-CCceEEEecCCceEEEeccCCCccceeee-------cchhh-ee--e
Confidence            9999999998887776642   3567777775 66789999999999999999877777665       33232 55  3


Q ss_pred             EE-EeCCCCCEEEEEeCCCcEEEEeecCC
Q 001295         1045 IA-AHPQEPNEFALGLSDGGVHVFEPLES 1072 (1106)
Q Consensus      1045 ~~-~~~~d~~~l~t~~~Dg~v~vW~~~~~ 1072 (1106)
                      +. |...++.+|+|+++||.|+|||++..
T Consensus       255 i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  255 IASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             eEEEecCCceEEEEeccCceEEEEEcccc
Confidence            44 33336789999999999999999877

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=1.3e-26  Score=227.84  Aligned_cols=243  Identities=17%  Similarity=0.239  Sum_probs=196.8

Q ss_pred             eeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCC
Q 001295          345 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  424 (1106)
Q Consensus       345 ~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg  424 (1106)
                      .+-+|.+.|.|++=+|..-..+|+|+.||.|+|||+.+.+++.                   .+..|.+.|..+++..  
T Consensus        61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~-------------------~f~AH~G~V~Gi~v~~--  119 (433)
T KOG0268|consen   61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR-------------------TFKAHEGLVRGICVTQ--  119 (433)
T ss_pred             hccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh-------------------eeecccCceeeEEecc--
Confidence            3345999999999999984469999999999999999887776                   3789999999999987  


Q ss_pred             CEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCe
Q 001295          425 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV  504 (1106)
Q Consensus       425 ~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v  504 (1106)
                      ..+++++.|++|+.|.++.. .++   ++.+ ...+..+.-+..+.  .++|||.  .|.|||.....+++.+.--...|
T Consensus       120 ~~~~tvgdDKtvK~wk~~~~-p~~---tilg-~s~~~gIdh~~~~~--~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti  190 (433)
T KOG0268|consen  120 TSFFTVGDDKTVKQWKIDGP-PLH---TILG-KSVYLGIDHHRKNS--VFATCGE--QIDIWDEQRDNPVSSMSWGADSI  190 (433)
T ss_pred             cceEEecCCcceeeeeccCC-cce---eeec-cccccccccccccc--cccccCc--eeeecccccCCccceeecCCCce
Confidence            67889999999999998873 222   4433 34567777666666  7899986  49999999999999999888899


Q ss_pred             EEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEE
Q 001295          505 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  584 (1106)
Q Consensus       505 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  584 (1106)
                      .++.|+|... ..|++|+.|+.|.+||++...++.......                      ..+.++|+|.+-.++++
T Consensus       191 ~svkfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~~m----------------------RTN~IswnPeafnF~~a  247 (433)
T KOG0268|consen  191 SSVKFNPVET-SILASCASDRSIVLYDLRQASPLKKVILTM----------------------RTNTICWNPEAFNFVAA  247 (433)
T ss_pred             eEEecCCCcc-hheeeeccCCceEEEecccCCccceeeeec----------------------cccceecCccccceeec
Confidence            9999988766 689999999999999999877765432211                      22335566655568889


Q ss_pred             ECCCeEEEEECCCc-ceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295          585 GDDFSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       585 ~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                      ++|..++.||++.- +++.....|  ...|.+++|||.|+-+++|+.|.+|+||..+.+
T Consensus       248 ~ED~nlY~~DmR~l~~p~~v~~dh--vsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~  304 (433)
T KOG0268|consen  248 NEDHNLYTYDMRNLSRPLNVHKDH--VSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHG  304 (433)
T ss_pred             cccccceehhhhhhcccchhhccc--ceeEEEeccCCCcchhccccccceEEEeecCCC
Confidence            99999999999764 345555544  558999999999999999999999999988765

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.94  E-value=2.4e-25  Score=237.23  Aligned_cols=241  Identities=17%  Similarity=0.302  Sum_probs=205.8

Q ss_pred             eeeecc-CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEE-EEE
Q 001295          343 VTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR-VIW  420 (1106)
Q Consensus       343 ~~~~~~-h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~-l~~  420 (1106)
                      +.+.+. |++.|..+++.+..  .+++|+.||++++|+-..++-+..                 +.+.+|.+.|.+ +++
T Consensus         6 ls~~l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~~-----------------~~~~~~~g~i~~~i~y   66 (745)
T KOG0301|consen    6 LSHELEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLET-----------------HAFEGPKGFIANSICY   66 (745)
T ss_pred             eEEEeccCccchheeEecCCe--EEeecCCCCceeeeeccCcccccc-----------------eecccCcceeecccee
Confidence            344454 99999999988877  388999999999999766554432                 235778888888 888


Q ss_pred             cc-CCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEec
Q 001295          421 SP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG  499 (1106)
Q Consensus       421 sp-dg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  499 (1106)
                      -+ ++-.|++|+.|.+|.+|...+.+.+.   .|.||...|.++....++.   ++|||.|.++++|-  .+++...+.+
T Consensus        67 ~e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~--~~~l~~~l~g  138 (745)
T KOG0301|consen   67 AESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR--IGELVYSLQG  138 (745)
T ss_pred             ccccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec--chhhhcccCC
Confidence            86 66679999999999999999987665   7999999999999887775   89999999999995  5677788999


Q ss_pred             cCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCC
Q 001295          500 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN  579 (1106)
Q Consensus       500 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~  579 (1106)
                      |...|+++...+.   ..++||+.|++|++|.-  +....++.+|...|..+++-+++.                     
T Consensus       139 H~asVWAv~~l~e---~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~---------------------  192 (745)
T KOG0301|consen  139 HTASVWAVASLPE---NTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH---------------------  192 (745)
T ss_pred             cchheeeeeecCC---CcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC---------------------
Confidence            9999999987554   37999999999999964  577788999999999999999876                     


Q ss_pred             EEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEcc
Q 001295          580 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS  640 (1106)
Q Consensus       580 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~  640 (1106)
                       |++++.||.|++|++ +|+.+..+.+|  ...+.+++...++..+++++.|++++||+..
T Consensus       193 -flScsNDg~Ir~w~~-~ge~l~~~~gh--tn~vYsis~~~~~~~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  193 -FLSCSNDGSIRLWDL-DGEVLLEMHGH--TNFVYSISMALSDGLIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             -eEeecCCceEEEEec-cCceeeeeecc--ceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence             999999999999999 78888887666  5579999988899999999999999999864

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.94  E-value=1.4e-25  Score=228.57  Aligned_cols=269  Identities=14%  Similarity=0.224  Sum_probs=218.5

Q ss_pred             ceeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEc
Q 001295          342 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  421 (1106)
Q Consensus       342 ~~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s  421 (1106)
                      +....+.|.++|+.+.+-|....++|+++..+.|.|||+.+.......      .   +.-.+...+.+|...=+.|+|+
T Consensus       116 ~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~------~---~~~~Pdl~L~gH~~eg~glsWn  186 (422)
T KOG0264|consen  116 EISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA------S---GECRPDLRLKGHEKEGYGLSWN  186 (422)
T ss_pred             EEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc------c---ccCCCceEEEeecccccccccc
Confidence            455567799999999999999999999999999999999765433210      0   0111223588999988899999


Q ss_pred             c-CCCEEEEEeCCCeEEEEEccCCce----eeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCC--CCcee
Q 001295          422 P-DGSLFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT--NGAKQ  494 (1106)
Q Consensus       422 p-dg~~las~~~d~~v~iwd~~~~~~----~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~--~~~~~  494 (1106)
                      + ..-+|++++.|++|++||+.....    +.....+.+|...|..++|++-... +|+++++|+.+.|||++  +.++.
T Consensus       187 ~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~  265 (422)
T KOG0264|consen  187 RQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPS  265 (422)
T ss_pred             cccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCc
Confidence            9 455789999999999999985433    5556678999999999999998887 79999999999999999  56667


Q ss_pred             EEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCC-ceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEE
Q 001295          495 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  573 (1106)
Q Consensus       495 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~  573 (1106)
                      ....+|.+.|+|++|+|.. +.+|++||.|++|++||+++.. ++..+..|...|..+.|+|...               
T Consensus       266 ~~~~ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~e---------------  329 (422)
T KOG0264|consen  266 HSVKAHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNE---------------  329 (422)
T ss_pred             ccccccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCC---------------
Confidence            7888999999999998865 4899999999999999999865 4558888999999999998775               


Q ss_pred             EcCCCCEEEEEECCCeEEEEECCCcce------------eEEEccCCCCCCcCeEEEccCCC-EEEEEeCCCcEEEEEcc
Q 001295          574 FDTTKNRFLAAGDDFSIKFWDMDSVQL------------LTSIDADGGLPASPRIRFNKDGC-LLAVSTNDNGIKILATS  640 (1106)
Q Consensus       574 ~~~~~~~l~~~~~d~~i~iwd~~~~~~------------~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iwd~~  640 (1106)
                           ..|++++.|+.+.+||+..-..            ...|...+|...|..+.|+|+.. .+++.+.|+.+.||...
T Consensus       330 -----tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  330 -----TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             -----ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence                 3588899999999999864221            12244456677899999999655 56778899999999875


Q ss_pred             C
Q 001295          641 D  641 (1106)
Q Consensus       641 ~  641 (1106)
                      .
T Consensus       405 ~  405 (422)
T KOG0264|consen  405 E  405 (422)
T ss_pred             c
Confidence            3

>PTZ00420 coronin; Provisional

Probab=99.94  E-value=2.1e-24  Score=242.99  Aligned_cols=235  Identities=14%  Similarity=0.196  Sum_probs=181.0

Q ss_pred             EeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccC-CCEEEEEeCCCeEEEEEccCCce-
Q 001295          369 GTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQIYSYHGGDE-  446 (1106)
Q Consensus       369 g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~las~~~d~~v~iwd~~~~~~-  446 (1106)
                      |+.++.|++|+......+.                   .+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++.. 
T Consensus        50 GG~~gvI~L~~~~r~~~v~-------------------~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~  110 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVI-------------------KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES  110 (568)
T ss_pred             CCceeEEEeeecCCCceEE-------------------EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence            4456677777765543332                   37899999999999996 89999999999999999986432 


Q ss_pred             e----eeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEe
Q 001295          447 V----RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA  522 (1106)
Q Consensus       447 ~----~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~  522 (1106)
                      .    .....+.+|...|.+++|+|++.. ++++++.|++|+|||+++++.+..+. |...|.+++|++  +|.+|++++
T Consensus       111 ~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswsp--dG~lLat~s  186 (568)
T PTZ00420        111 VKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNI--KGNLLSGTC  186 (568)
T ss_pred             ccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECC--CCCEEEEEe
Confidence            1    123357899999999999999874 56899999999999999999888776 667899999865  457999999


Q ss_pred             cCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCC----eEEEEECCC-
Q 001295          523 LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF----SIKFWDMDS-  597 (1106)
Q Consensus       523 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~----~i~iwd~~~-  597 (1106)
                      .|+.|++||++++.....+..|.+.+....                +....+++++.++++++.++    .|++||++. 
T Consensus       187 ~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~----------------v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~  250 (568)
T PTZ00420        187 VGKHMHIIDPRKQEIASSFHIHDGGKNTKN----------------IWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNT  250 (568)
T ss_pred             cCCEEEEEECCCCcEEEEEecccCCceeEE----------------EEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCC
Confidence            999999999999877777777765443322                22233556777899887664    799999985 


Q ss_pred             cceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295          598 VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       598 ~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                      ++++..+..+.....+......++|.++++|+.|+.|++|++..+
T Consensus       251 ~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~  295 (568)
T PTZ00420        251 TSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG  295 (568)
T ss_pred             CCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence            666766655544333333344557999999999999999999765

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=4.4e-25  Score=237.00  Aligned_cols=276  Identities=18%  Similarity=0.251  Sum_probs=228.4

Q ss_pred             cEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeC
Q 001295          353 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS  432 (1106)
Q Consensus       353 v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~  432 (1106)
                      .+-+.||..+  +||+|. +..|.+|+-.+++....                   ...++..|+++.|+++|.+||+|..
T Consensus       180 ~nlldWss~n--~laVal-g~~vylW~~~s~~v~~l-------------------~~~~~~~vtSv~ws~~G~~LavG~~  237 (484)
T KOG0305|consen  180 LNLLDWSSAN--VLAVAL-GQSVYLWSASSGSVTEL-------------------CSFGEELVTSVKWSPDGSHLAVGTS  237 (484)
T ss_pred             hhHhhcccCC--eEEEEe-cceEEEEecCCCceEEe-------------------EecCCCceEEEEECCCCCEEEEeec
Confidence            3456788555  477765 46899999999886542                   2333789999999999999999999


Q ss_pred             CCeEEEEEccCCceeeeeeeecc-ccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEE-EeccCCCeEEEecc
Q 001295          433 RHIVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI-FEGHEAPVYSVCPH  510 (1106)
Q Consensus       433 d~~v~iwd~~~~~~~~~~~~l~~-h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~h~~~v~~~~~~  510 (1106)
                      +|.|.|||....+.++   .+.+ |...|.+++|.  +.  .+.+|+.|+.|..+|++..+.... +.+|...|..+.|+
T Consensus       238 ~g~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws  310 (484)
T KOG0305|consen  238 DGTVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS  310 (484)
T ss_pred             CCeEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC
Confidence            9999999999877665   5677 99999999998  44  789999999999999998877665 88999999999986


Q ss_pred             ccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEE--ECCC
Q 001295          511 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA--GDDF  588 (1106)
Q Consensus       511 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~d~  588 (1106)
                      +  ++.++++|+.|+.+.|||....+.+..+..|...|..++|+|-..                    ..||+|  +.|+
T Consensus       311 ~--d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~--------------------~lLAsGGGs~D~  368 (484)
T KOG0305|consen  311 P--DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQS--------------------GLLATGGGSADR  368 (484)
T ss_pred             C--CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCcc--------------------CceEEcCCCccc
Confidence            5  458999999999999999988899999999999999999988655                    357774  4799


Q ss_pred             eEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEE--eCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCC
Q 001295          589 SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS--TNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT  666 (1106)
Q Consensus       589 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  666 (1106)
                      .|++||..+++.+..+....   .|.++.|++..+-|+++  ..++.|.||+..+. ..+..+                 
T Consensus       369 ~i~fwn~~~g~~i~~vdtgs---QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~-~~~~~l-----------------  427 (484)
T KOG0305|consen  369 CIKFWNTNTGARIDSVDTGS---QVCSLIWSKKYKELLSTHGYSENQITLWKYPSM-KLVAEL-----------------  427 (484)
T ss_pred             EEEEEEcCCCcEecccccCC---ceeeEEEcCCCCEEEEecCCCCCcEEEEecccc-ceeeee-----------------
Confidence            99999999999998886543   59999999988766654  45678899987653 111111                 


Q ss_pred             cCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccce
Q 001295          667 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI  746 (1106)
Q Consensus       667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i  746 (1106)
                                                                                               .+|..+|
T Consensus       428 -------------------------------------------------------------------------~gH~~RV  434 (484)
T KOG0305|consen  428 -------------------------------------------------------------------------LGHTSRV  434 (484)
T ss_pred             -------------------------------------------------------------------------cCCccee
Confidence                                                                                     2488899


Q ss_pred             EEEEEcCCCceEEEeecCceEEEeecc
Q 001295          747 SRLIFTNSGNAILALASNAIHLLWKWQ  773 (1106)
Q Consensus       747 ~~~~~s~~~~~l~~~~~dg~i~iw~~~  773 (1106)
                      ..++++|||..+++++.|.++++|++-
T Consensus       435 l~la~SPdg~~i~t~a~DETlrfw~~f  461 (484)
T KOG0305|consen  435 LYLALSPDGETIVTGAADETLRFWNLF  461 (484)
T ss_pred             EEEEECCCCCEEEEecccCcEEecccc
Confidence            999999999999999999999999753

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=6.9e-26  Score=239.27  Aligned_cols=374  Identities=16%  Similarity=0.189  Sum_probs=271.2

Q ss_pred             CCCcCeE---EEEEcc-CCCEEEEEeCCCeEEEEEccCCcee--e-eeeeeccccCCeeEEEEcCCCCceEEEEecCCCc
Q 001295          410 DPGVSVN---RVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEV--R-QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT  482 (1106)
Q Consensus       410 ~h~~~V~---~l~~sp-dg~~las~~~d~~v~iwd~~~~~~~--~-~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~  482 (1106)
                      .|...|.   .+..+. +++||.+||.||.|++|++......  . ....++.|.+.|+.++...+++  .|+|+|.|-+
T Consensus        19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtT   96 (735)
T KOG0308|consen   19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTT   96 (735)
T ss_pred             hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCce
Confidence            3444455   455554 7788999999999999998754321  1 2346889999999999999998  6999999999


Q ss_pred             EEEEeCCCC--ceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeE
Q 001295          483 IKVWDATNG--AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRT  560 (1106)
Q Consensus       483 i~iwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~  560 (1106)
                      |++|+...+  -+..++..|...|.|+++- ..+..++++||.|+.|.+||+.++.....                    
T Consensus        97 VK~W~~~~~~~~c~stir~H~DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~--------------------  155 (735)
T KOG0308|consen   97 VKVWNAHKDNTFCMSTIRTHKDYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLV--------------------  155 (735)
T ss_pred             EEEeecccCcchhHhhhhcccchheeeeec-ccCceeEEecCCCccEEEEEccCcchhhh--------------------
Confidence            999999887  6778899999999999973 44557999999999999999986432100                    


Q ss_pred             EEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEcc
Q 001295          561 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS  640 (1106)
Q Consensus       561 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~  640 (1106)
                                             ++. ..+..=++..          +....|.+++.++.|..+++|+..+.+++||.+
T Consensus       156 -----------------------~s~-n~~t~~sl~s----------G~k~siYSLA~N~t~t~ivsGgtek~lr~wDpr  201 (735)
T KOG0308|consen  156 -----------------------ASF-NNVTVNSLGS----------GPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPR  201 (735)
T ss_pred             -----------------------hhc-cccccccCCC----------CCccceeeeecCCcceEEEecCcccceEEeccc
Confidence                                   000 0011101111          224468899999999999999999999999987


Q ss_pred             CCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceee
Q 001295          641 DGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKV  720 (1106)
Q Consensus       641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v  720 (1106)
                      +.++..+                                                                         
T Consensus       202 t~~kimk-------------------------------------------------------------------------  208 (735)
T KOG0308|consen  202 TCKKIMK-------------------------------------------------------------------------  208 (735)
T ss_pred             cccceee-------------------------------------------------------------------------
Confidence            7622111                                                                         


Q ss_pred             EecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCcc
Q 001295          721 WKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMM  800 (1106)
Q Consensus       721 w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~  800 (1106)
                                                                                                      
T Consensus       209 --------------------------------------------------------------------------------  208 (735)
T KOG0308|consen  209 --------------------------------------------------------------------------------  208 (735)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEE
Q 001295          801 TNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY  879 (1106)
Q Consensus       801 ~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iw  879 (1106)
                         +.  +|...|.++..++||..+++++ ||+|++||+...+++.++..|...|.++..+| +=..+.+|+.||.|+.=
T Consensus       209 ---Lr--GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~-sf~~vYsG~rd~~i~~T  282 (735)
T KOG0308|consen  209 ---LR--GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSP-SFTHVYSGGRDGNIYRT  282 (735)
T ss_pred             ---ee--ccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCC-CcceEEecCCCCcEEec
Confidence               11  2777788888888898888887 89999999999999999999999999999999 88899999999999999


Q ss_pred             EeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEE
Q 001295          880 NVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF  959 (1106)
Q Consensus       880 d~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l  959 (1106)
                      |+.+......+-....+|..+..+.+..-+-+++.|+.|+-|....                       ...+++.|.+.
T Consensus       283 dl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~-----------------------~~~l~~s~~~~  339 (735)
T KOG0308|consen  283 DLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEP-----------------------DIALSVSGDLD  339 (735)
T ss_pred             ccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCcc-----------------------ccccccCCCCC
Confidence            9988432222223445677777765444556778899999997654                       12344445544


Q ss_pred             EEEeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295          960 LVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus       960 ~~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
                      ..+.+....+++... ..-..+  .| ..+|..-++-.|.++++|-...|.+.+||+-..+.+..+.
T Consensus       340 ~~~T~~~~~~~~~~~-tp~~vi--~G-g~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~d~g  402 (735)
T KOG0308|consen  340 FFSTDSNNHSCDLTN-TPDSVI--PG-GAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKVEDFG  402 (735)
T ss_pred             cccccCCCccccccC-CCceec--cC-chhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeehhhcc
Confidence            444444444444321 111111  12 4567777778899999999999999999998776655443

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=4.1e-25  Score=224.66  Aligned_cols=292  Identities=16%  Similarity=0.191  Sum_probs=225.7

Q ss_pred             ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeee--------------eeee-ccccCCeeEEEEcCCCCc
Q 001295          407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQ--------------HLEI-DAHVGGVNDIAFSHPNKQ  471 (1106)
Q Consensus       407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~--------------~~~l-~~h~~~V~~~~~s~d~~~  471 (1106)
                      ....|.-+|.||+++||+++..+++.|++|.=|++.+|+..+-              ...- ++|...|.+++.++||+ 
T Consensus       137 ~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk-  215 (479)
T KOG0299|consen  137 VIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK-  215 (479)
T ss_pred             eeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc-
Confidence            3678999999999999999999999999999999998874310              0011 37889999999999999 


Q ss_pred             eEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEE
Q 001295          472 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM  551 (1106)
Q Consensus       472 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  551 (1106)
                       +|++|+.|..|.|||.++.+.++.+.+|.+.|.+++|-...  +.+++++.|+.|++|+++....+.++-+|...|.++
T Consensus       216 -ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I  292 (479)
T KOG0299|consen  216 -YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI  292 (479)
T ss_pred             -EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc--cceeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence             89999999999999999999999999999999999986544  579999999999999999988888888999888888


Q ss_pred             EEecCCCeEEEeeeccceeEEEEcCCCCEEEE-EECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeC
Q 001295          552 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA-AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN  630 (1106)
Q Consensus       552 ~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  630 (1106)
                      ....-++                      +++ |+.|+++++|++.... ...+.++  ...+-|++|-. ...+++|++
T Consensus       293 daL~reR----------------------~vtVGgrDrT~rlwKi~ees-qlifrg~--~~sidcv~~In-~~HfvsGSd  346 (479)
T KOG0299|consen  293 DALSRER----------------------CVTVGGRDRTVRLWKIPEES-QLIFRGG--EGSIDCVAFIN-DEHFVSGSD  346 (479)
T ss_pred             chhcccc----------------------eEEeccccceeEEEeccccc-eeeeeCC--CCCeeeEEEec-ccceeeccC
Confidence            7766665                      555 6699999999995433 3344444  33578888875 457889999


Q ss_pred             CCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccc
Q 001295          631 DNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRI  710 (1106)
Q Consensus       631 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  710 (1106)
                      +|.|.+|++...+.++..-..|.-...                                                     
T Consensus       347 nG~IaLWs~~KKkplf~~~~AHgv~~~-----------------------------------------------------  373 (479)
T KOG0299|consen  347 NGSIALWSLLKKKPLFTSRLAHGVIPE-----------------------------------------------------  373 (479)
T ss_pred             CceEEEeeecccCceeEeeccccccCC-----------------------------------------------------
Confidence            999999998776322221111111000                                                     


Q ss_pred             cccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCcc
Q 001295          711 TEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQ  790 (1106)
Q Consensus       711 ~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~  790 (1106)
                                           .     ....+...|++++..|....+++++.+|.+++|.+..+..             
T Consensus       374 ---------------------~-----~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r-------------  414 (479)
T KOG0299|consen  374 ---------------------L-----DPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR-------------  414 (479)
T ss_pred             ---------------------c-----cccccccceeeeEecccCceEEecCCCCceEEEEecCCcc-------------
Confidence                                 0     0001335899999999999999999999999998764321             


Q ss_pred             ccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe
Q 001295          791 LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS  829 (1106)
Q Consensus       791 ~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s  829 (1106)
                               ....+......+.|++++|+++|+++++|.
T Consensus       415 ---------~i~~l~~ls~~GfVNsl~f~~sgk~ivagi  444 (479)
T KOG0299|consen  415 ---------AINLLYSLSLVGFVNSLAFSNSGKRIVAGI  444 (479)
T ss_pred             ---------ccceeeecccccEEEEEEEccCCCEEEEec
Confidence                     111111123577899999999999888885

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=9.9e-25  Score=209.75  Aligned_cols=206  Identities=18%  Similarity=0.205  Sum_probs=161.8

Q ss_pred             cCCCCcCeEEEEEcc-CCCEEEEEeCCCeEEEEEccCC-ceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEE
Q 001295          408 VKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGG-DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV  485 (1106)
Q Consensus       408 ~~~h~~~V~~l~~sp-dg~~las~~~d~~v~iwd~~~~-~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~i  485 (1106)
                      -...++.|.+|+||| ...+++.+|.|++||+|++... ....  .....|.++|.+++|+.||.  .+++|+.|+.+++
T Consensus        23 ~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~--ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~   98 (347)
T KOG0647|consen   23 PNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP--KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKL   98 (347)
T ss_pred             CCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc--hhhhccCCCeEEEEEccCCc--eEEeeccCCceEE
Confidence            356678999999999 5666778999999999999873 3322  24567999999999999998  7999999999999


Q ss_pred             EeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeee
Q 001295          486 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR  565 (1106)
Q Consensus       486 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~  565 (1106)
                      ||+.+++ +..+..|.++|..+.|.+..+-..|++|+.|++|++||++...++..+..++. +.++..            
T Consensus        99 wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR-vYa~Dv------------  164 (347)
T KOG0647|consen   99 WDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER-VYAADV------------  164 (347)
T ss_pred             EEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce-eeehhc------------
Confidence            9999995 56677799999999998777667899999999999999998888777766654 222211            


Q ss_pred             ccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295          566 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       566 ~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                                 ....++.+..++.|.+|+++.+..........-.-.++|++..+|....+.|+-+|.+.|..+..+
T Consensus       165 -----------~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~  230 (347)
T KOG0647|consen  165 -----------LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDP  230 (347)
T ss_pred             -----------cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCC
Confidence                       112477788999999999977643322211111235789999998888899999999999887664

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=2.4e-24  Score=208.04  Aligned_cols=313  Identities=15%  Similarity=0.205  Sum_probs=212.0

Q ss_pred             ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCce-----eeeeeeeccccCCeeEEEEcCCCCceEEEEecCCC
Q 001295          407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDE-----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK  481 (1106)
Q Consensus       407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~-----~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~  481 (1106)
                      .|++|.+.|++++||.||++||+++.|++|+||+++....     ++...    .-+--+.++|+||-+. +++++-...
T Consensus        81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv----e~dhpT~V~FapDc~s-~vv~~~~g~  155 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV----EYDHPTRVVFAPDCKS-VVVSVKRGN  155 (420)
T ss_pred             hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc----cCCCceEEEECCCcce-EEEEEccCC
Confidence            5899999999999999999999999999999999986432     22111    1223577899999886 566666677


Q ss_pred             cEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEE
Q 001295          482 TIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY  561 (1106)
Q Consensus       482 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~  561 (1106)
                      ++++|-+...+. ..     .+-..+                     -||-....     ..|.-.+..+-         
T Consensus       156 ~l~vyk~~K~~d-G~-----~~~~~v---------------------~~D~~~f~-----~kh~v~~i~iG---------  194 (420)
T KOG2096|consen  156 KLCVYKLVKKTD-GS-----GSHHFV---------------------HIDNLEFE-----RKHQVDIINIG---------  194 (420)
T ss_pred             EEEEEEeeeccc-CC-----CCcccc---------------------cccccccc-----hhcccceEEEe---------
Confidence            788886432221 00     111111                     11100000     00111111121         


Q ss_pred             EeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccC
Q 001295          562 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD  641 (1106)
Q Consensus       562 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~  641 (1106)
                                  ....+.++++++.|..|.+|+++ |+.+..+.....  .-...+.||+|+++++++..-.+++|.+--
T Consensus       195 ------------iA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~--~n~~aavSP~GRFia~~gFTpDVkVwE~~f  259 (420)
T KOG2096|consen  195 ------------IAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQS--SNYDAAVSPDGRFIAVSGFTPDVKVWEPIF  259 (420)
T ss_pred             ------------ecCCceEEEEecCCCcEEEEecC-Cceeeeeccccc--cccceeeCCCCcEEEEecCCCCceEEEEEe
Confidence                        22233478899999999999997 888888865432  346789999999999999999999998632


Q ss_pred             CchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeE
Q 001295          642 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW  721 (1106)
Q Consensus       642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw  721 (1106)
                      ++      .+              .|.                                               ...+++
T Consensus       260 ~k------dG--------------~fq-----------------------------------------------ev~rvf  272 (420)
T KOG2096|consen  260 TK------DG--------------TFQ-----------------------------------------------EVKRVF  272 (420)
T ss_pred             cc------Cc--------------chh-----------------------------------------------hhhhhh
Confidence            20      00              000                                               011222


Q ss_pred             ecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccc-cCCCCccccccCccccCCCCCCcc
Q 001295          722 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTE-RNSSGKATASVAPQLWQPPSGIMM  800 (1106)
Q Consensus       722 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~  800 (1106)
                      .+                .+|...|..++|+++...+++++.||.++|||++-.- ...+.+.+.          .|.  
T Consensus       273 ~L----------------kGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk----------~g~--  324 (420)
T KOG2096|consen  273 SL----------------KGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILK----------EGS--  324 (420)
T ss_pred             ee----------------ccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhh----------cCC--
Confidence            22                3599999999999999999999999999999986321 111111111          111  


Q ss_pred             ccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeee-cCCCCCeeEEEEecCCCceEEEeeCCCcEEEE
Q 001295          801 TNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATF-MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY  879 (1106)
Q Consensus       801 ~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~-~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iw  879 (1106)
                       ..+.  ........++++|+|+.||.+....|++|..++++..-++ ..|...|.+|+|++ +|+++|+++ |..++++
T Consensus       325 -~pl~--aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~-~g~~~atcG-dr~vrv~  399 (420)
T KOG2096|consen  325 -APLH--AAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSS-DGKYIATCG-DRYVRVI  399 (420)
T ss_pred             -cchh--hcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecC-CCcEEeeec-ceeeeee
Confidence             0011  1233445899999999999999999999999998877665 45888999999999 999999886 6788887


Q ss_pred             E
Q 001295          880 N  880 (1106)
Q Consensus       880 d  880 (1106)
                      .
T Consensus       400 ~  400 (420)
T KOG2096|consen  400 R  400 (420)
T ss_pred             c
Confidence            6

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=1.3e-25  Score=220.77  Aligned_cols=285  Identities=16%  Similarity=0.227  Sum_probs=219.0

Q ss_pred             cCCCCcCeEEEEEccCC-CEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEE
Q 001295          408 VKDPGVSVNRVIWSPDG-SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  486 (1106)
Q Consensus       408 ~~~h~~~V~~l~~spdg-~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw  486 (1106)
                      |.||.+.|.|++=+|.. ..+|+|+.||.|+|||+...+++.   ++..|.+.|..|++..  .  .++++|+|++|+.|
T Consensus        62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~---~f~AH~G~V~Gi~v~~--~--~~~tvgdDKtvK~w  134 (433)
T KOG0268|consen   62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR---TFKAHEGLVRGICVTQ--T--SFFTVGDDKTVKQW  134 (433)
T ss_pred             ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh---eeecccCceeeEEecc--c--ceEEecCCcceeee
Confidence            68999999999999976 889999999999999999877666   7899999999999987  3  58999999999999


Q ss_pred             eCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeec
Q 001295          487 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  566 (1106)
Q Consensus       487 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  566 (1106)
                      -+.- .+++++.+ ...+..+.-+.  .+..++|||.+  |.|||.....++..+.-....+.++.|+|-..        
T Consensus       135 k~~~-~p~~tilg-~s~~~gIdh~~--~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkfNpvET--------  200 (433)
T KOG0268|consen  135 KIDG-PPLHTILG-KSVYLGIDHHR--KNSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKFNPVET--------  200 (433)
T ss_pred             eccC-Ccceeeec-ccccccccccc--ccccccccCce--eeecccccCCccceeecCCCceeEEecCCCcc--------
Confidence            8665 46666654 34455555332  23578888754  89999887666665555555555555555443        


Q ss_pred             cceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhh
Q 001295          567 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL  646 (1106)
Q Consensus       567 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  646 (1106)
                                  ..|++++.|+.|.+||++++.+++.+...-   .-+.++|+|.+-.+++|+.|..++.+|++.-...+
T Consensus       201 ------------sILas~~sDrsIvLyD~R~~~Pl~KVi~~m---RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~  265 (433)
T KOG0268|consen  201 ------------SILASCASDRSIVLYDLRQASPLKKVILTM---RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPL  265 (433)
T ss_pred             ------------hheeeeccCCceEEEecccCCccceeeeec---cccceecCccccceeeccccccceehhhhhhcccc
Confidence                        246667799999999999999888775432   35779999988899999999999999997664444


Q ss_pred             hhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCC
Q 001295          647 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL  726 (1106)
Q Consensus       647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~  726 (1106)
                      ....                                                                            
T Consensus       266 ~v~~----------------------------------------------------------------------------  269 (433)
T KOG0268|consen  266 NVHK----------------------------------------------------------------------------  269 (433)
T ss_pred             hhhc----------------------------------------------------------------------------
Confidence            3332                                                                            


Q ss_pred             CCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCC
Q 001295          727 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  806 (1106)
Q Consensus       727 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  806 (1106)
                                    +|...|.++.|+|.|+.+++++-|.+|+||....+...              |+    ..+     
T Consensus       270 --------------dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SR--------------di----Yht-----  312 (433)
T KOG0268|consen  270 --------------DHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSR--------------DI----YHT-----  312 (433)
T ss_pred             --------------ccceeEEEeccCCCcchhccccccceEEEeecCCCcch--------------hh----hhH-----
Confidence                          26778899999999999999999999999986532110              00    000     


Q ss_pred             CCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCc
Q 001295          807 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFK  842 (1106)
Q Consensus       807 ~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~  842 (1106)
                       ..-..|.|+.||.|.+++++|+ |+.|++|.....+
T Consensus       313 -kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase  348 (433)
T KOG0268|consen  313 -KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE  348 (433)
T ss_pred             -hhhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence             0234589999999999999999 7999999876443

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.93  E-value=2.9e-24  Score=216.26  Aligned_cols=280  Identities=18%  Similarity=0.309  Sum_probs=228.9

Q ss_pred             CCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccc
Q 001295          611 PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASM  690 (1106)
Q Consensus       611 ~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  690 (1106)
                      ..+.++...+....+.+|+.|..+.++|...+ +.+..+.|                                       
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~-q~l~~~~G---------------------------------------  259 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSN-QILATLKG---------------------------------------  259 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchh-hhhhhccC---------------------------------------
Confidence            35677777777788999999999999998877 66665544                                       


Q ss_pred             cccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEe
Q 001295          691 VSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLW  770 (1106)
Q Consensus       691 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw  770 (1106)
                                                                         |...|+.+.|+++...+++++.|..|+||
T Consensus       260 ---------------------------------------------------h~kki~~v~~~~~~~~v~~aSad~~i~vw  288 (506)
T KOG0289|consen  260 ---------------------------------------------------HTKKITSVKFHKDLDTVITASADEIIRVW  288 (506)
T ss_pred             ---------------------------------------------------cceEEEEEEeccchhheeecCCcceEEee
Confidence                                                               66678899999999999999999999999


Q ss_pred             eccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecC
Q 001295          771 KWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP  849 (1106)
Q Consensus       771 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~  849 (1106)
                      .......                      ... .  ..|..+|+.+...|.|.||++++ |++..+.|++++.++.....
T Consensus       289 s~~~~s~----------------------~~~-~--~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~  343 (506)
T KOG0289|consen  289 SVPLSSE----------------------PTS-S--RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSD  343 (506)
T ss_pred             ccccccC----------------------ccc-c--ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEee
Confidence            7653110                      000 1  23999999999999999999999 89999999999998776553


Q ss_pred             --CCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcc
Q 001295          850 --PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE  927 (1106)
Q Consensus       850 --~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~  927 (1106)
                        ..-.+++.+|+| ||.++++|..||.|+|||+.++..+..|.+|+++|.+++|+.+|-|||++++|+.|++||++.-+
T Consensus       344 ~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~  422 (506)
T KOG0289|consen  344 ETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK  422 (506)
T ss_pred             ccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc
Confidence              234589999999 99999999999999999999999999999999999999999999999999999999999998754


Q ss_pred             cccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeEEEEecC--CceEeeecccCCCCCCeeEEEECCCCCEEEE
Q 001295          928 KQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETT--KLECVKQWVPRESSAPITHATFSCDSQLVYA 1004 (1106)
Q Consensus       928 ~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v~i~d~~--~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t 1004 (1106)
                      ..+.  +.....     ..+..+.|.+.|++|+.+ .+=+|++++-.  ...++..+.  .|++..+.+.|..+.+++++
T Consensus       423 n~kt--~~l~~~-----~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~--~~sg~st~v~Fg~~aq~l~s  493 (506)
T KOG0289|consen  423 NFKT--IQLDEK-----KEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELA--DHSGLSTGVRFGEHAQYLAS  493 (506)
T ss_pred             ccce--eecccc-----ccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhh--hcccccceeeecccceEEee
Confidence            3222  222211     257899999999999995 55566666643  345555554  77889999999999999999


Q ss_pred             EEcCCeEEEEEc
Q 001295         1005 CFLDATVCVFSA 1016 (1106)
Q Consensus      1005 ~s~Dg~i~vwd~ 1016 (1106)
                      ++.|..++++.+
T Consensus       494 ~smd~~l~~~a~  505 (506)
T KOG0289|consen  494 TSMDAILRLYAL  505 (506)
T ss_pred             ccchhheEEeec
Confidence            999999888754

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.93  E-value=3.2e-24  Score=215.94  Aligned_cols=282  Identities=20%  Similarity=0.279  Sum_probs=230.5

Q ss_pred             CCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCc
Q 001295          458 GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS  537 (1106)
Q Consensus       458 ~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  537 (1106)
                      ..+.++...+...  .+++|+.|..+.++|..+++.+..++||...|+.+.+++..  ..+++++.|..|++|.......
T Consensus       220 pgi~ald~~~s~~--~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~--~~v~~aSad~~i~vws~~~~s~  295 (506)
T KOG0289|consen  220 PGITALDIIPSSS--KILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDL--DTVITASADEIIRVWSVPLSSE  295 (506)
T ss_pred             CCeeEEeecCCCC--cceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccch--hheeecCCcceEEeeccccccC
Confidence            4577888888745  69999999999999999999999999999999999988766  5799999999999999887776


Q ss_pred             eeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEE
Q 001295          538 RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIR  617 (1106)
Q Consensus       538 ~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~  617 (1106)
                      ......|..+|+.+...|.|                     .||++++.|+...+.|+.++..+...........+++.+
T Consensus       296 ~~~~~~h~~~V~~ls~h~tg---------------------eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~  354 (506)
T KOG0289|consen  296 PTSSRPHEEPVTGLSLHPTG---------------------EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA  354 (506)
T ss_pred             ccccccccccceeeeeccCC---------------------cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence            66666676666666555555                     599999999999999999999888876543344688999


Q ss_pred             EccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCC
Q 001295          618 FNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMN  697 (1106)
Q Consensus       618 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  697 (1106)
                      |+|||.++.+|+.||.++|||+.++. ....                                                 
T Consensus       355 fHpDgLifgtgt~d~~vkiwdlks~~-~~a~-------------------------------------------------  384 (506)
T KOG0289|consen  355 FHPDGLIFGTGTPDGVVKIWDLKSQT-NVAK-------------------------------------------------  384 (506)
T ss_pred             EcCCceEEeccCCCceEEEEEcCCcc-cccc-------------------------------------------------
Confidence            99999999999999999999987651 0000                                                 


Q ss_pred             CCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeecccccc
Q 001295          698 GDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTER  777 (1106)
Q Consensus       698 ~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~  777 (1106)
                                                                                                      
T Consensus       385 --------------------------------------------------------------------------------  384 (506)
T KOG0289|consen  385 --------------------------------------------------------------------------------  384 (506)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCC-CCCee
Q 001295          778 NSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP-PPAAT  855 (1106)
Q Consensus       778 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~-~~~v~  855 (1106)
                                                ++  +|.++|..++|+.||-||++++ |+.|++||++..+...++... ..++.
T Consensus       385 --------------------------Fp--ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~  436 (506)
T KOG0289|consen  385 --------------------------FP--GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVN  436 (506)
T ss_pred             --------------------------CC--CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccce
Confidence                                      11  2777888888888888888888 677888888877766666433 34799


Q ss_pred             EEEEecCCCceEEEeeCCCcEEEEEee--cceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeC
Q 001295          856 FLAFHPQDNNIIAIGMDDSSIQIYNVR--VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS  923 (1106)
Q Consensus       856 ~l~~s~~d~~~la~g~~dg~v~iwd~~--~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~  923 (1106)
                      ++.|.+ .|.+|+.++.|=+|++++-.  ++.++..+..|++..+++.|..+.++++++|.|..++++.+
T Consensus       437 s~~fD~-SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  437 SLSFDQ-SGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             eEEEcC-CCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            999998 89999999877555555532  57888899999999999999999999999999999988764

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.93  E-value=2e-24  Score=230.21  Aligned_cols=274  Identities=14%  Similarity=0.233  Sum_probs=225.5

Q ss_pred             cccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccc-cccCCCCCCCCeeE-EE
Q 001295          740 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT-NDVTDSNPEEAVPC-FA  817 (1106)
Q Consensus       740 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~v~~-l~  817 (1106)
                      .+|...|..+++.+.. .+++++.||++++|+-...                      ..+. ..+.  +|.+.|.+ ++
T Consensus        11 ~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~----------------------~~l~~~~~~--~~~g~i~~~i~   65 (745)
T KOG0301|consen   11 EGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGK----------------------QYLETHAFE--GPKGFIANSIC   65 (745)
T ss_pred             ccCccchheeEecCCe-EEeecCCCCceeeeeccCc----------------------ccccceecc--cCcceeeccce
Confidence            4688889888877666 5899999999999975321                      1111 1121  25666665 77


Q ss_pred             Eec-CCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCccc
Q 001295          818 LSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK  895 (1106)
Q Consensus       818 ~s~-~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~  895 (1106)
                      +.+ ++-.+++|+ |.+|.+|...+...+.++.+|...|.++.... ++. +++|+.|.++++|-.  +++...+.+|..
T Consensus        66 y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~a  141 (745)
T KOG0301|consen   66 YAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQGHTA  141 (745)
T ss_pred             eccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecc--hhhhcccCCcch
Confidence            775 444577887 99999999999999999999999999999776 565 999999999999976  456677999999


Q ss_pred             CeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCc
Q 001295          896 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL  975 (1106)
Q Consensus       896 ~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~  975 (1106)
                      .|+++++-|++ .++|||.|.+|++|.-.+       .++.+.||..   .|+.+++-+++.++.++.||.|+.|++ ++
T Consensus       142 sVWAv~~l~e~-~~vTgsaDKtIklWk~~~-------~l~tf~gHtD---~VRgL~vl~~~~flScsNDg~Ir~w~~-~g  209 (745)
T KOG0301|consen  142 SVWAVASLPEN-TYVTGSADKTIKLWKGGT-------LLKTFSGHTD---CVRGLAVLDDSHFLSCSNDGSIRLWDL-DG  209 (745)
T ss_pred             heeeeeecCCC-cEEeccCcceeeeccCCc-------hhhhhccchh---heeeeEEecCCCeEeecCCceEEEEec-cC
Confidence            99999999988 899999999999998754       6788888886   999999999999999999999999999 68


Q ss_pred             eEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEE
Q 001295          976 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEF 1055 (1106)
Q Consensus       976 ~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l 1055 (1106)
                      +++....  +|..-|+++....++..++++++|++++||+..  ++.+.+.    +|.    ..++  ++.+.+  ..-+
T Consensus       210 e~l~~~~--ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~----lPt----tsiW--sa~~L~--NgDI  273 (745)
T KOG0301|consen  210 EVLLEMH--GHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVIT----LPT----TSIW--SAKVLL--NGDI  273 (745)
T ss_pred             ceeeeee--ccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEe----cCc----cceE--EEEEee--CCCE
Confidence            8877766  999999999999999999999999999999977  6666666    442    2366  666665  3467


Q ss_pred             EEEeCCCcEEEEeec
Q 001295         1056 ALGLSDGGVHVFEPL 1070 (1106)
Q Consensus      1056 ~t~~~Dg~v~vW~~~ 1070 (1106)
                      ++|++||.|+||-.+
T Consensus       274 vvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  274 VVGGSDGRVRVFTVD  288 (745)
T ss_pred             EEeccCceEEEEEec
Confidence            788889999999987

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.6e-22  Score=222.99  Aligned_cols=516  Identities=14%  Similarity=0.181  Sum_probs=322.6

Q ss_pred             EEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCc-eEEEEecCCCcEEEEeCCCCcee
Q 001295          416 NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ-LCVITCGDDKTIKVWDATNGAKQ  494 (1106)
Q Consensus       416 ~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~-~~l~s~~~d~~i~iwd~~~~~~~  494 (1106)
                      ..-.||+|+++++.+. +..|.||...+|+++.   .+.+|..++..+.+.|.... .++++++.||.|++||...+..+
T Consensus        20 ~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Ll   95 (792)
T KOG1963|consen   20 SPAVFSNDAKFLFLCT-GNFVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELL   95 (792)
T ss_pred             cccccccCCcEEEEee-CCEEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEE
Confidence            3456999999998775 5669999999999887   68899999999999987763 47889999999999999999999


Q ss_pred             EEEeccCCCeEEEecccc-CCceEEE-EEecCCeE-EEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeE
Q 001295          495 YIFEGHEAPVYSVCPHHK-ENIQFIF-STALDGKI-KAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV  571 (1106)
Q Consensus       495 ~~~~~h~~~v~~~~~~~~-~~~~~l~-s~~~dg~i-~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~  571 (1106)
                      .++..+. ++.++.+.+. .+...++ .+..|..+ .....+..+....+       .-..+..-.......+.  .-.+
T Consensus        96 kt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~-------~~~t~~~~~~d~~~~~~--~~~~  165 (792)
T KOG1963|consen   96 KTFDNNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRF-------VLATFDSAKGDFLKEHQ--EPKS  165 (792)
T ss_pred             EEEecCC-ceeEEEechhHhCccceeEeecccceeeeecccccccceeee-------Eeeeccccchhhhhhhc--CCcc
Confidence            9887543 3333322110 0001111 11111111 10000100000000       00000000000000000  1234


Q ss_pred             EEEcCCCCEEEEEECCCeEEEEECCCcceeEEE---ccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhh
Q 001295          572 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI---DADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRT  648 (1106)
Q Consensus       572 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  648 (1106)
                      +.+++.+.+.... .+..+.+|+..++. ....   ....|...+++.+++|+++++++|..||.|.+|.--..      
T Consensus       166 I~~~~~ge~~~i~-~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~------  237 (792)
T KOG1963|consen  166 IVDNNSGEFKGIV-HMCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS------  237 (792)
T ss_pred             EEEcCCceEEEEE-EeeeEEEEEecccc-eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc------
Confidence            5556666544444 45578889887755 1111   11123334789999999999999999999999953220      


Q ss_pred             hcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCC
Q 001295          649 FENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSE  728 (1106)
Q Consensus       649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~  728 (1106)
                       .+..                                                            ...++.=|       
T Consensus       238 -~~~~------------------------------------------------------------~t~t~lHW-------  249 (792)
T KOG1963|consen  238 -SDDS------------------------------------------------------------ETCTLLHW-------  249 (792)
T ss_pred             -cccc------------------------------------------------------------ccceEEEe-------
Confidence             0000                                                            00111112       


Q ss_pred             CccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCC
Q 001295          729 PNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSN  808 (1106)
Q Consensus       729 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  808 (1106)
                                   |...|.+++|+++|.+|++||..+.+.+|.+.++                      .  ...++.  
T Consensus       250 -------------H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~----------------------~--kqfLPR--  290 (792)
T KOG1963|consen  250 -------------HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETG----------------------K--KQFLPR--  290 (792)
T ss_pred             -------------cccccceeEEecCCceEeecccceEEEEEeecCC----------------------C--cccccc--
Confidence                         6788999999999999999999999999987642                      2  111222  


Q ss_pred             CCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCC-----------CCCeeEEEEecCCCceEEEeeCCCcE
Q 001295          809 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP-----------PPAATFLAFHPQDNNIIAIGMDDSSI  876 (1106)
Q Consensus       809 ~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~-----------~~~v~~l~~s~~d~~~la~g~~dg~v  876 (1106)
                      ..++|..+.+|||+.+.+... |+.|.+..+.+.....++.+.           .+-.+.++++| ..+.++..+..|.|
T Consensus       291 Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~v  369 (792)
T KOG1963|consen  291 LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHV  369 (792)
T ss_pred             cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceE
Confidence            688999999999999888776 999999988766555544332           23357788998 67778888899999


Q ss_pred             EEEEeecceEEEEec-----------CcccCeeEEEEecCCCEEEEEc--------CCC--cEEEEeCCCcccccceeec
Q 001295          877 QIYNVRVDEVKSKLK-----------GHSKRITGLAFSHALNVLVSSG--------ADS--QLCVWSSDGWEKQKNRFLQ  935 (1106)
Q Consensus       877 ~iwd~~~~~~~~~l~-----------~h~~~V~~l~~s~d~~~l~s~s--------~Dg--~i~vwd~~~~~~~~~~~~~  935 (1106)
                      .+||+.+.+.+..++           .+.-.|++++.+-.|.++++.-        .||  .+++|-.....+.......
T Consensus       370 Q~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~  449 (792)
T KOG1963|consen  370 QFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTK  449 (792)
T ss_pred             EEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEE
Confidence            999998877665542           1334578888888899999863        233  4789987664433322222


Q ss_pred             ccCCCCCCCCCCceEEEcCCCc-EEEE-EeCCeEEEEecCCceEe--------eecccCCCCCCeeEEEECCCCCEEEEE
Q 001295          936 IPTGRTPTAQSDTRVQFHQDQI-HFLV-VHETQLAIFETTKLECV--------KQWVPRESSAPITHATFSCDSQLVYAC 1005 (1106)
Q Consensus       936 ~~~~~~~~~~~i~~~~~s~dg~-~l~~-~~d~~v~i~d~~~~~~~--------~~~~~~~h~~~v~~l~~s~d~~~l~t~ 1005 (1106)
                      +...|..  ..+..+.+++... ..++ +.|+.+++|-....+-+        ......-|..++++++|+.||..|+.+
T Consensus       450 I~~PH~~--~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s  527 (792)
T KOG1963|consen  450 INNPHGN--AFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVS  527 (792)
T ss_pred             EecCCCc--eeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEe
Confidence            2223322  2233333333333 4555 69999999988432211        111112368999999999999777655


Q ss_pred             EcCCeEEEEEcCC-ceeEEeeCCCcccCCCCCCCCccceEEEEe---CCCCCEEEEEeCCCcEEEEeecCCCCcc
Q 001295         1006 FLDATVCVFSAAN-LKLRCRINPSAYLPAGVSSSNVHPLVIAAH---PQEPNEFALGLSDGGVHVFEPLESEGKW 1076 (1106)
Q Consensus      1006 s~Dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~d~~~l~t~~~Dg~v~vW~~~~~~~~~ 1076 (1106)
                       .|++|.+||..+ .++.+... ....+.+         .+.|.   +.+  ..+.....+.+.+|++.+..-.|
T Consensus       528 -~~~~Itiwd~~~~~~l~~~~~-~~~~~~~---------~~~~~~~~~~~--~~~~~~~~~~l~~WNll~~~l~w  589 (792)
T KOG1963|consen  528 -FDDTITIWDYDTKNELLCTEG-SRNWPIA---------ELLFTAQTQND--GALVHATQQRLSVWNLLSMSLIW  589 (792)
T ss_pred             -cCCEEEEecCCChhhhhcccc-ccccchH---------hHhhhcccccc--cceeeccCceEehHhhhhhheec
Confidence             689999999998 55554443 2222222         12222   212  23334457889999999888666

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=3.1e-23  Score=200.74  Aligned_cols=269  Identities=16%  Similarity=0.259  Sum_probs=206.5

Q ss_pred             EEEEeCCCeEEEEEccCCc---------eeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEE
Q 001295          427 FGVAYSRHIVQIYSYHGGD---------EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF  497 (1106)
Q Consensus       427 las~~~d~~v~iwd~~~~~---------~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  497 (1106)
                      |++|+....|.=+++.-..         .+.+.+.+..|.+.|++++.+  +.  ++||||.|-+|+|||+++...+..+
T Consensus         4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~--~~aSGssDetI~IYDm~k~~qlg~l   79 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GP--YVASGSSDETIHIYDMRKRKQLGIL   79 (362)
T ss_pred             EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ce--eEeccCCCCcEEEEeccchhhhcce
Confidence            4555555555555443211         123456688999999999985  66  8999999999999999999999999


Q ss_pred             eccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCC
Q 001295          498 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT  577 (1106)
Q Consensus       498 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~  577 (1106)
                      -.|.+.|+++.|.+......|++|+.||.|.+|+...-.....+..|.+.|+.++.+|.++                   
T Consensus        80 l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~K-------------------  140 (362)
T KOG0294|consen   80 LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGK-------------------  140 (362)
T ss_pred             eccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCc-------------------
Confidence            9999999999998766555899999999999999998888888888888777777776665                   


Q ss_pred             CCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccc
Q 001295          578 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDAS  657 (1106)
Q Consensus       578 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  657 (1106)
                        .-++.+.|+.+++||+-.|+.-..+.....   -..+.|+|.|.+++.+..+ .|-+|.+.+. ..+..+.       
T Consensus       141 --LALsVg~D~~lr~WNLV~Gr~a~v~~L~~~---at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A-~v~~~i~-------  206 (362)
T KOG0294|consen  141 --LALSVGGDQVLRTWNLVRGRVAFVLNLKNK---ATLVSWSPQGDHFVVSGRN-KIDIYQLDNA-SVFREIE-------  206 (362)
T ss_pred             --eEEEEcCCceeeeehhhcCccceeeccCCc---ceeeEEcCCCCEEEEEecc-EEEEEecccH-hHhhhhh-------
Confidence              677889999999999999887766654332   3459999999988888774 6778876554 2222111       


Q ss_pred             cCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceeccc
Q 001295          658 RTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL  737 (1106)
Q Consensus       658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~  737 (1106)
                                                                                                      
T Consensus       207 --------------------------------------------------------------------------------  206 (362)
T KOG0294|consen  207 --------------------------------------------------------------------------------  206 (362)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEE
Q 001295          738 PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA  817 (1106)
Q Consensus       738 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~  817 (1106)
                                                                                             ....+.|+.
T Consensus       207 -----------------------------------------------------------------------~~~r~l~~~  215 (362)
T KOG0294|consen  207 -----------------------------------------------------------------------NPKRILCAT  215 (362)
T ss_pred             -----------------------------------------------------------------------ccccceeee
Confidence                                                                                   111223333


Q ss_pred             EecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEe-cCCCceEEEeeCCCcEEEEEeecc
Q 001295          818 LSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFH-PQDNNIIAIGMDDSSIQIYNVRVD  884 (1106)
Q Consensus       818 ~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s-~~d~~~la~g~~dg~v~iwd~~~~  884 (1106)
                      |. ++..|++|. |+.|++||..+..+...+.+|...|..+.+- ..++.+|++++.||.|+|||+...
T Consensus       216 ~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  216 FL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             ec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            33 344566665 7889999999989999999999999999843 226789999999999999999865

>PTZ00420 coronin; Provisional

Probab=99.93  E-value=1.5e-23  Score=236.22  Aligned_cols=241  Identities=14%  Similarity=0.180  Sum_probs=175.0

Q ss_pred             eeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCC
Q 001295          345 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  424 (1106)
Q Consensus       345 ~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg  424 (1106)
                      ...+|.+.|.+++|+|+...+||+|+.||+|+|||+.++...... +          ......+.+|...|.+++|+|++
T Consensus        69 ~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~-i----------~~p~~~L~gH~~~V~sVaf~P~g  137 (568)
T PTZ00420         69 KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE-I----------KDPQCILKGHKKKISIIDWNPMN  137 (568)
T ss_pred             EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc-c----------ccceEEeecCCCcEEEEEECCCC
Confidence            344599999999999974336999999999999999865321100 0          00111367899999999999998


Q ss_pred             CE-EEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCC
Q 001295          425 SL-FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP  503 (1106)
Q Consensus       425 ~~-las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~  503 (1106)
                      .. |++++.|++|+|||+.+++.+.   .+. |...|.+++|+|+|.  +|++++.|+.|+|||+++++.+.++.+|.+.
T Consensus       138 ~~iLaSgS~DgtIrIWDl~tg~~~~---~i~-~~~~V~SlswspdG~--lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~  211 (568)
T PTZ00420        138 YYIMCSSGFDSFVNIWDIENEKRAF---QIN-MPKKLSSLKWNIKGN--LLSGTCVGKHMHIIDPRKQEIASSFHIHDGG  211 (568)
T ss_pred             CeEEEEEeCCCeEEEEECCCCcEEE---EEe-cCCcEEEEEECCCCC--EEEEEecCCEEEEEECCCCcEEEEEecccCC
Confidence            76 4789999999999999987554   343 567899999999999  8899999999999999999999999999987


Q ss_pred             eEEEeccc---cCCceEEEEEecCC----eEEEEeCCCCCc-eeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEc
Q 001295          504 VYSVCPHH---KENIQFIFSTALDG----KIKAWLYDNLGS-RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD  575 (1106)
Q Consensus       504 v~~~~~~~---~~~~~~l~s~~~dg----~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~  575 (1106)
                      +.+.++..   .+++.+|++++.|+    .|++||++.... +.....+.. ..                  .+......
T Consensus       212 ~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~-~~------------------~L~p~~D~  272 (568)
T PTZ00420        212 KNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNA-SA------------------PLIPHYDE  272 (568)
T ss_pred             ceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCC-cc------------------ceEEeeeC
Confidence            65544322   24557888888774    799999996433 222221111 11                  11111123


Q ss_pred             CCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCC
Q 001295          576 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG  622 (1106)
Q Consensus       576 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~  622 (1106)
                      +++.++++|+.|+.|++|++..+. +..+.......++.+++|.|+.
T Consensus       273 ~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        273 STGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             CCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence            345678899999999999998764 4444443344567889999964

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=3.6e-24  Score=206.24  Aligned_cols=328  Identities=14%  Similarity=0.235  Sum_probs=246.3

Q ss_pred             EEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCC
Q 001295          581 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTS  660 (1106)
Q Consensus       581 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  660 (1106)
                      +++.-.++++.      .++++.+.+|  .+.|..++.......+.+++.|.+-+||.++++ .++..+.          
T Consensus       127 ivssFk~~t~~------~~lvre~~GH--kDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg-~CL~~Y~----------  187 (481)
T KOG0300|consen  127 IVSSFKDGTVK------FRLVRELEGH--KDGIWHVAADSTQPICGTASADHTARIWSLESG-ACLATYT----------  187 (481)
T ss_pred             heeeecCCcee------Eeehhhhccc--ccceeeehhhcCCcceeecccccceeEEeeccc-cceeeec----------
Confidence            55555555532      2344555555  557888888887788999999999999999988 4444332          


Q ss_pred             CCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCcc
Q 001295          661 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN  740 (1106)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~  740 (1106)
                                                                                                      
T Consensus       188 --------------------------------------------------------------------------------  187 (481)
T KOG0300|consen  188 --------------------------------------------------------------------------------  187 (481)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccceEEEEEcCCCceEEEeecCceEEEeecccc----ccCCCCc-----cccccCccccCCC-----CCC---ccccc
Q 001295          741 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRT----ERNSSGK-----ATASVAPQLWQPP-----SGI---MMTND  803 (1106)
Q Consensus       741 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~-----~~~~~~~~~w~~~-----~~~---~~~~~  803 (1106)
                      +|.+.|.++.|++.+..+++++.|++..||...-+    +...+..     ......-..-|..     .|.   .....
T Consensus       188 GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~  267 (481)
T KOG0300|consen  188 GHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMR  267 (481)
T ss_pred             ccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeee
Confidence            37788999999999999999999999999983321    1000000     0000000000110     111   11222


Q ss_pred             cCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEee
Q 001295          804 VTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR  882 (1106)
Q Consensus       804 ~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~  882 (1106)
                      +.+  |...|.+..|-..|+.+++++ |.+-.+||++++..+..+.+|..+.+.++-+| ..+++++.+.|.+.++||+.
T Consensus       268 ltg--H~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFR  344 (481)
T KOG0300|consen  268 LTG--HRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFR  344 (481)
T ss_pred             eec--cccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cceEEEEeccCceeEeccch
Confidence            444  899999999999999999999 99999999999999999999999999999999 89999999999999999998


Q ss_pred             cc-eEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE
Q 001295          883 VD-EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV  961 (1106)
Q Consensus       883 ~~-~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~  961 (1106)
                      .. ..+..|+||.+.|+++.|..| ..++||++|.+|+|||+.+.....    ....    ...++..++.+..+..++.
T Consensus       345 eaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRspl----ATIR----tdS~~NRvavs~g~~iIAi  415 (481)
T KOG0300|consen  345 EAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPL----ATIR----TDSPANRVAVSKGHPIIAI  415 (481)
T ss_pred             hhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCcc----eeee----cCCccceeEeecCCceEEe
Confidence            53 457889999999999999866 578999999999999999854322    1111    1146788999999999998


Q ss_pred             E-eCCeEEEEecCCceEeeec--ccCCCCCCeeEEEECCCCCE--EEEEEcCCeEEEEEcCCc
Q 001295          962 V-HETQLAIFETTKLECVKQW--VPRESSAPITHATFSCDSQL--VYACFLDATVCVFSAANL 1019 (1106)
Q Consensus       962 ~-~d~~v~i~d~~~~~~~~~~--~~~~h~~~v~~l~~s~d~~~--l~t~s~Dg~i~vwd~~~~ 1019 (1106)
                      - .+..|++||+...+..+.-  .-.+|..-|+|.+|+.+.-.  |++++.|..+.=|.+.+-
T Consensus       416 PhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  416 PHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             ccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence            5 6678999999876654433  23588999999999876543  888999999999998754

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=2.2e-24  Score=200.93  Aligned_cols=257  Identities=19%  Similarity=0.242  Sum_probs=206.0

Q ss_pred             cCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc--CCC
Q 001295          348 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGS  425 (1106)
Q Consensus       348 ~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~  425 (1106)
                      .|.+.|..+...--|++ |||++.|++|+|+.+.++.....                ...|.||+++|+.++|-.  -|.
T Consensus         9 ~H~D~IHda~lDyygkr-lATcsSD~tVkIf~v~~n~~s~l----------------l~~L~Gh~GPVwqv~wahPk~G~   71 (299)
T KOG1332|consen    9 QHEDMIHDAQLDYYGKR-LATCSSDGTVKIFEVRNNGQSKL----------------LAELTGHSGPVWKVAWAHPKFGT   71 (299)
T ss_pred             hhhhhhhHhhhhhhcce-eeeecCCccEEEEEEcCCCCcee----------------eeEecCCCCCeeEEeecccccCc
Confidence            38999999999999996 99999999999999987653111                114899999999999987  899


Q ss_pred             EEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCC-c--eeEEEeccCC
Q 001295          426 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-A--KQYIFEGHEA  502 (1106)
Q Consensus       426 ~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~--~~~~~~~h~~  502 (1106)
                      +||+++.||.|.||.-.+|+ ..+......|...|++++|.|.+--+.|++++.||.|.|.+.++. .  .......|.-
T Consensus        72 iLAScsYDgkVIiWke~~g~-w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~  150 (299)
T KOG1332|consen   72 ILASCSYDGKVIIWKEENGR-WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEI  150 (299)
T ss_pred             EeeEeecCceEEEEecCCCc-hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccc
Confidence            99999999999999999884 445557789999999999999988889999999999999988754 1  2345667999


Q ss_pred             CeEEEeccccCC-c-----------eEEEEEecCCeEEEEeCCCCCc--eeEeeCCCCeeEEEEEecCCCeEEEeeeccc
Q 001295          503 PVYSVCPHHKEN-I-----------QFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQGFRKRS  568 (1106)
Q Consensus       503 ~v~~~~~~~~~~-~-----------~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~  568 (1106)
                      .|++++|.|..- |           ..|++|+.|..|++|+.++..-  ...+..|.+.|..++|.|.-..         
T Consensus       151 GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl---------  221 (299)
T KOG1332|consen  151 GVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGL---------  221 (299)
T ss_pred             ccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCC---------
Confidence            999999987621 1           5699999999999999987532  2357889999999999886431         


Q ss_pred             eeEEEEcCCCCEEEEEECCCeEEEEECCCc--ceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEcc
Q 001295          569 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSV--QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS  640 (1106)
Q Consensus       569 i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~  640 (1106)
                              ...++++++.||+|.||..+..  .-..++ .+.-...+..++||..|+.|++++.|+.+.+|.-.
T Consensus       222 --------~~s~iAS~SqDg~viIwt~~~e~e~wk~tl-l~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  222 --------PKSTIASCSQDGTVIIWTKDEEYEPWKKTL-LEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             --------CceeeEEecCCCcEEEEEecCccCcccccc-cccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence                    1135999999999999987632  111111 11223468899999999999999999999999654

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=7.3e-24  Score=197.44  Aligned_cols=222  Identities=20%  Similarity=0.278  Sum_probs=178.6

Q ss_pred             ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcC--CCCceEEEEecCCCcEE
Q 001295          407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH--PNKQLCVITCGDDKTIK  484 (1106)
Q Consensus       407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~--d~~~~~l~s~~~d~~i~  484 (1106)
                      +...|++.|..+...--|++||+++.|++|+|+.+..+.....+.+|.||.++|..++|..  .|.  +|++++.||.|.
T Consensus         6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVI   83 (299)
T KOG1332|consen    6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVI   83 (299)
T ss_pred             hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEE
Confidence            4578999999998888999999999999999999998776677779999999999999987  677  899999999999


Q ss_pred             EEeCCCCc--eeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCc---eeEeeCCCCeeEEEEEecC---
Q 001295          485 VWDATNGA--KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS---RVDYEAPGRWCTTMAYSAD---  556 (1106)
Q Consensus       485 iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~---  556 (1106)
                      ||.-+.|+  ..+....|...|++++|.|..-|-.|++++.||.|.+.+++....   ......|.-.|++++|.|.   
T Consensus        84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~  163 (299)
T KOG1332|consen   84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP  163 (299)
T ss_pred             EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence            99977764  345677899999999999999999999999999999999887522   2244567778899999886   


Q ss_pred             CCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCC----CEEEEEeCCC
Q 001295          557 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG----CLLAVSTNDN  632 (1106)
Q Consensus       557 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~----~~l~~~~~dg  632 (1106)
                      |..+-.+...          .-..|++|+.|+.|+||+..+++-+..-...+|.+.|+.++|.|.-    .+|++++.||
T Consensus       164 g~~~~~~~~~----------~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg  233 (299)
T KOG1332|consen  164 GSLVDQGPAA----------KVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDG  233 (299)
T ss_pred             ccccccCccc----------ccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCC
Confidence            3211110000          0136999999999999999886433222233457799999999953    6899999999


Q ss_pred             cEEEEEcc
Q 001295          633 GIKILATS  640 (1106)
Q Consensus       633 ~i~iwd~~  640 (1106)
                      ++.||-..
T Consensus       234 ~viIwt~~  241 (299)
T KOG1332|consen  234 TVIIWTKD  241 (299)
T ss_pred             cEEEEEec
Confidence            99999765

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=2.8e-22  Score=194.13  Aligned_cols=240  Identities=19%  Similarity=0.197  Sum_probs=186.6

Q ss_pred             CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEE
Q 001295          349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  428 (1106)
Q Consensus       349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  428 (1106)
                      -.+.|..|.|+|.+.. |++++-||++++||+...+...                    .-.|+.++.+++|.+ ...++
T Consensus        12 P~d~IS~v~f~~~~~~-LLvssWDgslrlYdv~~~~l~~--------------------~~~~~~plL~c~F~d-~~~~~   69 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSD-LLVSSWDGSLRLYDVPANSLKL--------------------KFKHGAPLLDCAFAD-ESTIV   69 (323)
T ss_pred             ChhceeeEEEcCcCCc-EEEEeccCcEEEEeccchhhhh--------------------heecCCceeeeeccC-CceEE
Confidence            4689999999999987 5555789999999998774432                    356888999999987 55788


Q ss_pred             EEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEe
Q 001295          429 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC  508 (1106)
Q Consensus       429 s~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~  508 (1106)
                      +|+.||.|+.+|+.++....    +..|..+|.||.+++...  .+++||.|++|++||.+.......+. ....|.++.
T Consensus        70 ~G~~dg~vr~~Dln~~~~~~----igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~  142 (323)
T KOG1036|consen   70 TGGLDGQVRRYDLNTGNEDQ----IGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMD  142 (323)
T ss_pred             EeccCceEEEEEecCCccee----eccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEe
Confidence            99999999999999987654    778999999999998777  79999999999999998766665655 344888886


Q ss_pred             ccccCCceEEEEEecCCeEEEEeCCCCCceeEeeC--CCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEEC
Q 001295          509 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA--PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD  586 (1106)
Q Consensus       509 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  586 (1106)
                      .    .++.|+.|+.|..+.+||+++.........  -...+                     .++++-|++.-+++++-
T Consensus       143 v----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqt---------------------R~v~~~pn~eGy~~sSi  197 (323)
T KOG1036|consen  143 V----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQT---------------------RCVALVPNGEGYVVSSI  197 (323)
T ss_pred             c----cCCEEEEeecCceEEEEEcccccchhhhccccceeEE---------------------EEEEEecCCCceEEEee
Confidence            4    336799999999999999998765542211  11233                     44444555556889999


Q ss_pred             CCeEEEEECCCc----ceeEEEccCCC-------CCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295          587 DFSIKFWDMDSV----QLLTSIDADGG-------LPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       587 d~~i~iwd~~~~----~~~~~~~~~~~-------~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                      ||.|.+=.++..    +....|+.|..       .-+|++++|+|--..|++|+.||.|.+||..+.
T Consensus       198 eGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r  264 (323)
T KOG1036|consen  198 EGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR  264 (323)
T ss_pred             cceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcch
Confidence            999988766655    33344444421       136889999999899999999999999999776

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.6e-22  Score=223.02  Aligned_cols=251  Identities=17%  Similarity=0.196  Sum_probs=204.0

Q ss_pred             ccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEec
Q 001295          741 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK  820 (1106)
Q Consensus       741 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~  820 (1106)
                      +|....+.++|.|+|..|++++.||.|++|+......                  .  +..+.    .+...|.+++.. 
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e------------------~--P~ti~----~~g~~v~~ia~~-   65 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE------------------E--PETID----ISGELVSSIACY-   65 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc------------------C--Cchhh----ccCceeEEEeec-
Confidence            4788899999999999999999999999998653211                  0  11110    056667777764 


Q ss_pred             CCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeE
Q 001295          821 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG  899 (1106)
Q Consensus       821 ~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~  899 (1106)
                       +.++++++ +++|.+|.+.++..-..+....-++++++|+. +|+++|.|++|-.|++-++.+......+++|.++|.+
T Consensus        66 -s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~  143 (933)
T KOG1274|consen   66 -SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQ  143 (933)
T ss_pred             -ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceee
Confidence             44888888 89999999988776555555567899999999 9999999999999999999999999999999999999


Q ss_pred             EEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEecCCceEe
Q 001295          900 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECV  978 (1106)
Q Consensus       900 l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d~~~~~~~  978 (1106)
                      |.|+|.+.+||+.+.||+|++|++.++....................+..++|+|+|..+++ +.|+.|.+|+..+.+..
T Consensus       144 l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~  223 (933)
T KOG1274|consen  144 LSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQ  223 (933)
T ss_pred             eeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeh
Confidence            99999999999999999999999998765332211111111111234577899999555555 89999999999999998


Q ss_pred             eecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCC
Q 001295          979 KQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1018 (1106)
Q Consensus       979 ~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~ 1018 (1106)
                      ..+..+.|...+.++.|||+|+|||+++.||.|.|||+++
T Consensus       224 f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  224 FKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             eeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            8888777777799999999999999999999999999997

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.91  E-value=3.7e-23  Score=211.44  Aligned_cols=282  Identities=12%  Similarity=0.175  Sum_probs=223.7

Q ss_pred             cccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecC
Q 001295          742 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  821 (1106)
Q Consensus       742 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~  821 (1106)
                      |..-|..++++...+.+.+++ .|.|+|||+........                   +. .+.-....+.|.++.+.||
T Consensus       418 HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~P-------------------vs-qLdcl~rdnyiRSckL~pd  476 (705)
T KOG0639|consen  418 HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSP-------------------VS-QLDCLNRDNYIRSCKLLPD  476 (705)
T ss_pred             cCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCc-------------------cc-cccccCcccceeeeEecCC
Confidence            778888899999888777665 46899999874311110                   00 0111225778999999999


Q ss_pred             CCEEEEEe-CCeEEEEEcCCCcee--eeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCee
Q 001295          822 DSYVMSAS-GGKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT  898 (1106)
Q Consensus       822 ~~~l~~~s-dg~i~vwd~~~~~~~--~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~  898 (1106)
                      |+.|++|+ -.++.|||+......  ..+........+++.+| |.++.++++.||.|.|||+.+..+++.|+||.+.+.
T Consensus       477 grtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGas  555 (705)
T KOG0639|consen  477 GRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS  555 (705)
T ss_pred             CceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCce
Confidence            99999999 688999999865433  33444445688899999 999999999999999999999999999999999999


Q ss_pred             EEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeEEEEecCCceE
Q 001295          899 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC  977 (1106)
Q Consensus       899 ~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v~i~d~~~~~~  977 (1106)
                      ||.+++||..|-+|+-|.+||-||+..+++...     ..    ....|.++-++|.+.+|+++ ..+.+.|......+.
T Consensus       556 cIdis~dGtklWTGGlDntvRcWDlregrqlqq-----hd----F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k  626 (705)
T KOG0639|consen  556 CIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQ-----HD----FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK  626 (705)
T ss_pred             eEEecCCCceeecCCCccceeehhhhhhhhhhh-----hh----hhhhheecccCCCccceeeecccCcEEEEecCCccc
Confidence            999999999999999999999999998764321     11    12478999999999999997 567788877665443


Q ss_pred             eeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEE
Q 001295          978 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1057 (1106)
Q Consensus       978 ~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t 1057 (1106)
                      .   ...-|.+.|.++.|++.|+++++.+.|..+-.|...-|..+.+.+         +...|.  ++..+. |.+++||
T Consensus       627 y---qlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk---------E~SsVl--sCDIS~-ddkyIVT  691 (705)
T KOG0639|consen  627 Y---QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK---------ESSSVL--SCDISF-DDKYIVT  691 (705)
T ss_pred             e---eecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc---------ccCcce--eeeecc-CceEEEe
Confidence            2   224689999999999999999999999999999999998886655         122244  555555 6799999


Q ss_pred             EeCCCcEEEEee
Q 001295         1058 GLSDGGVHVFEP 1069 (1106)
Q Consensus      1058 ~~~Dg~v~vW~~ 1069 (1106)
                      |+.|....|+.+
T Consensus       692 GSGdkkATVYeV  703 (705)
T KOG0639|consen  692 GSGDKKATVYEV  703 (705)
T ss_pred             cCCCcceEEEEE
Confidence            999998888876

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.2e-22  Score=207.30  Aligned_cols=215  Identities=16%  Similarity=0.152  Sum_probs=176.0

Q ss_pred             CcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCC--
Q 001295          412 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT--  489 (1106)
Q Consensus       412 ~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~--  489 (1106)
                      .++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+.   .+.+|-..|+|+.|+.||.  +|+|||.||.|.+|++.  
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~l  155 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTDL  155 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEee
Confidence            3479999999999999999899999999999999876   5789999999999999999  89999999999999763  


Q ss_pred             -------CCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEE
Q 001295          490 -------NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ  562 (1106)
Q Consensus       490 -------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~  562 (1106)
                             +-++++.|..|+-+|+++...+.+...+++|+|.|.++++||+..+..+..+..+ .                
T Consensus       156 v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp-~----------------  218 (476)
T KOG0646|consen  156 VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP-S----------------  218 (476)
T ss_pred             cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC-C----------------
Confidence                   3467889999999999999877655679999999999999999987655544332 2                


Q ss_pred             eeeccceeEEEEcCCCCEEEEEECCCeEEEEECCC----------------cceeEEEccCCCCCCcCeEEEccCCCEEE
Q 001295          563 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS----------------VQLLTSIDADGGLPASPRIRFNKDGCLLA  626 (1106)
Q Consensus       563 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~----------------~~~~~~~~~~~~~~~v~~v~~s~~~~~l~  626 (1106)
                           .+.++.++|.+..+++|+++|.|.+.++..                +..+..+.+|.....|+|++++-||.+|+
T Consensus       219 -----si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl  293 (476)
T KOG0646|consen  219 -----SIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL  293 (476)
T ss_pred             -----cceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE
Confidence                 344555555555777788888777776532                23445566665555899999999999999


Q ss_pred             EEeCCCcEEEEEccCCchhhhhhccccc
Q 001295          627 VSTNDNGIKILATSDGIRLLRTFENLAY  654 (1106)
Q Consensus       627 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~  654 (1106)
                      +|+.||.++|||+.+. ++++.+.....
T Consensus       294 SGd~dg~VcvWdi~S~-Q~iRtl~~~kg  320 (476)
T KOG0646|consen  294 SGDEDGKVCVWDIYSK-QCIRTLQTSKG  320 (476)
T ss_pred             eeCCCCCEEEEecchH-HHHHHHhhhcc
Confidence            9999999999999887 78887764333

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=7.4e-20  Score=202.17  Aligned_cols=253  Identities=16%  Similarity=0.238  Sum_probs=205.3

Q ss_pred             cCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEE
Q 001295          348 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF  427 (1106)
Q Consensus       348 ~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l  427 (1106)
                      .|+..-+.++|.|+|. .|.+++.||.|++|+...-+....                  ++.-++..|.+++-  ++.+|
T Consensus        11 aht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~------------------ti~~~g~~v~~ia~--~s~~f   69 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPE------------------TIDISGELVSSIAC--YSNHF   69 (933)
T ss_pred             hccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCc------------------hhhccCceeEEEee--cccce
Confidence            4888899999999999 588889999999999866521110                  12226777877776  45599


Q ss_pred             EEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEE
Q 001295          428 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV  507 (1106)
Q Consensus       428 as~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  507 (1106)
                      ++|+.+++|.+|....++.-..   +....-++.+++|+.+|+  +++.||.|-.|++-++.+......+.+|.++|.++
T Consensus        70 ~~~s~~~tv~~y~fps~~~~~i---L~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l  144 (933)
T KOG1274|consen   70 LTGSEQNTVLRYKFPSGEEDTI---LARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQL  144 (933)
T ss_pred             EEeeccceEEEeeCCCCCccce---eeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCceeee
Confidence            9999999999999998765432   334567899999999999  89999999999999999999999999999999999


Q ss_pred             eccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECC
Q 001295          508 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD  587 (1106)
Q Consensus       508 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  587 (1106)
                      .++|  ++++|++.+.||.|++||+.++.....+..-...-...             ....+..++|+|++..++..+.|
T Consensus       145 ~~~p--~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~-------------~s~i~~~~aW~Pk~g~la~~~~d  209 (933)
T KOG1274|consen  145 SYDP--KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFI-------------LSRICTRLAWHPKGGTLAVPPVD  209 (933)
T ss_pred             eEcC--CCCEEEEEecCceEEEEEcccchhhhhcccCCcccccc-------------ccceeeeeeecCCCCeEEeeccC
Confidence            9865  45799999999999999999877665554322110000             01245567788887789999999


Q ss_pred             CeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccC
Q 001295          588 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD  641 (1106)
Q Consensus       588 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~  641 (1106)
                      +.|.+|+..+.+....+........+.+++|+|+|+|||+++.+|.|.|||+.+
T Consensus       210 ~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  210 NTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             CeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            999999999999998887665555688999999999999999999999999986

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.91  E-value=3.4e-22  Score=191.10  Aligned_cols=238  Identities=16%  Similarity=0.249  Sum_probs=178.2

Q ss_pred             ccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc-CCC
Q 001295          347 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGS  425 (1106)
Q Consensus       347 ~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~  425 (1106)
                      -.|.+.|+++.+.+..-+++++|+.||.|.|||++.........+ +-+ ..|.  ....--.+|...|..+.|-| |..
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l-i~k-~~c~--v~~~h~~~Hky~iss~~WyP~DtG  115 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL-IAK-HKCI--VAKQHENGHKYAISSAIWYPIDTG  115 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc-eeh-eeee--ccccCCccceeeeeeeEEeeecCc
Confidence            349999999999996544699999999999999986542110000 000 0000  11112468999999999999 888


Q ss_pred             EEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCC-ceEEEEecCCCcEEEEeCCCCceeEEEeccCCCe
Q 001295          426 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNK-QLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV  504 (1106)
Q Consensus       426 ~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v  504 (1106)
                      ++.+++-|.+++|||..+-+...   .|+ -.+.|++-+|||-.. .-++++|..|-.|++-|+.+|.+-+++.||.+.|
T Consensus       116 mFtssSFDhtlKVWDtnTlQ~a~---~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~v  191 (397)
T KOG4283|consen  116 MFTSSSFDHTLKVWDTNTLQEAV---DFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGV  191 (397)
T ss_pred             eeecccccceEEEeecccceeeE---Eee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCce
Confidence            99999999999999999865443   232 456788888988643 3378888999999999999999999999999999


Q ss_pred             EEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEE
Q 001295          505 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  584 (1106)
Q Consensus       505 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  584 (1106)
                      .++.|+|..+ -.|++|+.||.|++||++...                                                
T Consensus       192 laV~Wsp~~e-~vLatgsaDg~irlWDiRras------------------------------------------------  222 (397)
T KOG4283|consen  192 LAVEWSPSSE-WVLATGSADGAIRLWDIRRAS------------------------------------------------  222 (397)
T ss_pred             EEEEeccCce-eEEEecCCCceEEEEEeeccc------------------------------------------------
Confidence            9999998765 689999999999999998521                                                


Q ss_pred             ECCCeEEEEECCCcceeEEEc-cCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCch
Q 001295          585 GDDFSIKFWDMDSVQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR  644 (1106)
Q Consensus       585 ~~d~~i~iwd~~~~~~~~~~~-~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~  644 (1106)
                         |..++.|...++....++ ...+.+.|+.++|+.++.++++.+.|..+++|+..+|..
T Consensus       223 ---gcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~n  280 (397)
T KOG4283|consen  223 ---GCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRN  280 (397)
T ss_pred             ---ceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcc
Confidence               223333333322222222 223456799999999999999999999999999988843

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=2.5e-20  Score=205.85  Aligned_cols=511  Identities=13%  Similarity=0.145  Sum_probs=315.2

Q ss_pred             EEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCC---CEEEEE
Q 001295          354 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG---SLFGVA  430 (1106)
Q Consensus       354 ~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg---~~las~  430 (1106)
                      ..-.||+|+++++..  .+..|.||...+|+++.                   .+.+|..++..+.+.|..   .++.++
T Consensus        20 ~~avfSnD~k~l~~~--~~~~V~VyS~~Tg~~i~-------------------~l~~~~a~l~s~~~~~~~~~~~~~~~~   78 (792)
T KOG1963|consen   20 SPAVFSNDAKFLFLC--TGNFVKVYSTATGECIT-------------------SLEDHTAPLTSVIVLPSSENANYLIVC   78 (792)
T ss_pred             cccccccCCcEEEEe--eCCEEEEEecchHhhhh-------------------hcccccCccceeeecCCCccceEEEEE
Confidence            345699999975553  45799999999999886                   489999999999999844   477899


Q ss_pred             eCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcC----CCCceEEEEecCCCcEEEEeCCCCceeE-----------
Q 001295          431 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH----PNKQLCVITCGDDKTIKVWDATNGAKQY-----------  495 (1106)
Q Consensus       431 ~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~----d~~~~~l~s~~~d~~i~iwd~~~~~~~~-----------  495 (1106)
                      +.||.|++||...++.++.   +.. ..++..+.+.|    .... +.++...-..+.-...+..+...           
T Consensus        79 sl~G~I~vwd~~~~~Llkt---~~~-~~~v~~~~~~~~~a~~s~~-~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~  153 (792)
T KOG1963|consen   79 SLDGTIRVWDWSDGELLKT---FDN-NLPVHALVYKPAQADISAN-VYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAK  153 (792)
T ss_pred             ecCccEEEecCCCcEEEEE---Eec-CCceeEEEechhHhCccce-eEeecccceeeeecccccccceeeeEeeeccccc
Confidence            9999999999999887763   322 22344443322    1110 11222111111111111111111           


Q ss_pred             --EEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEE
Q 001295          496 --IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  573 (1106)
Q Consensus       496 --~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~  573 (1106)
                        .+.+|.. -.++...+..   .+.....+..+.+|+.....  .....+              .... ++.-.+.+.+
T Consensus       154 ~d~~~~~~~-~~~I~~~~~g---e~~~i~~~~~~~~~~v~~~~--~~~~~~--------------~~~~-~Htf~~t~~~  212 (792)
T KOG1963|consen  154 GDFLKEHQE-PKSIVDNNSG---EFKGIVHMCKIHIYFVPKHT--KHTSSR--------------DITV-HHTFNITCVA  212 (792)
T ss_pred             hhhhhhhcC-CccEEEcCCc---eEEEEEEeeeEEEEEecccc--eeeccc--------------hhhh-hhcccceeEE
Confidence              1122322 2334433332   34444456678888776543  111000              0001 1111367788


Q ss_pred             EcCCCCEEEEEECCCeEEEEECCC--cceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcc
Q 001295          574 FDTTKNRFLAAGDDFSIKFWDMDS--VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN  651 (1106)
Q Consensus       574 ~~~~~~~l~~~~~d~~i~iwd~~~--~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  651 (1106)
                      ++|++++++++..||.|.+|.--.  +.....-..|.|...|.+++|+++|.+|++|+..|.+.+|.+.++++.   +. 
T Consensus       213 ~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kq---fL-  288 (792)
T KOG1963|consen  213 LSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQ---FL-  288 (792)
T ss_pred             eccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcc---cc-
Confidence            888888999999999999997433  222222223455668999999999999999999999999999887321   10 


Q ss_pred             cccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCcc
Q 001295          652 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ  731 (1106)
Q Consensus       652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~  731 (1106)
                                                                                                      
T Consensus       289 --------------------------------------------------------------------------------  288 (792)
T KOG1963|consen  289 --------------------------------------------------------------------------------  288 (792)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCC
Q 001295          732 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE  811 (1106)
Q Consensus       732 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  811 (1106)
                            |  .-...|..+.++||+...+....|..|.+-....-....        .+.-..+.+....      ....+
T Consensus       289 ------P--RLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~--------tIsgi~~~~~~~k------~~~~~  346 (792)
T KOG1963|consen  289 ------P--RLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKS--------TISGIKPPTPSTK------TRPQS  346 (792)
T ss_pred             ------c--ccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhh--------hccCccCCCcccc------ccccc
Confidence                  0  034678999999999999999999999887653211100        0000000000000      01345


Q ss_pred             CeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeec-----CCC------CCeeEEEEecCCCceEEEee--------
Q 001295          812 AVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM-----PPP------PAATFLAFHPQDNNIIAIGM--------  871 (1106)
Q Consensus       812 ~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~-----~~~------~~v~~l~~s~~d~~~la~g~--------  871 (1106)
                      -.+.++++|--+.++-.. .|.|.+||+-+.+.+..+.     .+.      -.+++++.+. .|.+++++-        
T Consensus       347 l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~-~gs~maT~E~~~d~~~~  425 (792)
T KOG1963|consen  347 LTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSR-FGSWMATLEARIDKFNF  425 (792)
T ss_pred             cceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhc-cceEEEEeeeeehhhhc
Confidence            567788999444444444 8999999998776665542     122      2478888888 688998864        


Q ss_pred             CCC--cEEEEEeecc----eEEEE-ecCcccCeeEEEEecC-C-CEEEEEcCCCcEEEEeCCCccc-----ccceeeccc
Q 001295          872 DDS--SIQIYNVRVD----EVKSK-LKGHSKRITGLAFSHA-L-NVLVSSGADSQLCVWSSDGWEK-----QKNRFLQIP  937 (1106)
Q Consensus       872 ~dg--~v~iwd~~~~----~~~~~-l~~h~~~V~~l~~s~d-~-~~l~s~s~Dg~i~vwd~~~~~~-----~~~~~~~~~  937 (1106)
                      .||  .+++|-....    .+... -..|...+...+|.+. . ..+++++.||.++||.+...+.     ..+.+..+.
T Consensus       426 ~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~  505 (792)
T KOG1963|consen  426 FDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIG  505 (792)
T ss_pred             cCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeee
Confidence            333  5678876543    22222 2458887777777543 2 3799999999999998843221     112333333


Q ss_pred             CCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCc-eEeeecccCCCCCCeeEEEECCCC--CEEEEEEcCCeEEEE
Q 001295          938 TGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL-ECVKQWVPRESSAPITHATFSCDS--QLVYACFLDATVCVF 1014 (1106)
Q Consensus       938 ~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~-~~~~~~~~~~h~~~v~~l~~s~d~--~~l~t~s~Dg~i~vw 1014 (1106)
                      .-|.   ..+..++|+.||..|+++.++.|.+||..+. .......  .-..++..+++....  ...+.....+.+.+|
T Consensus       506 sy~k---~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~W  580 (792)
T KOG1963|consen  506 SYHK---TPITALCFSQDGSLLAVSFDDTITIWDYDTKNELLCTEG--SRNWPIAELLFTAQTQNDGALVHATQQRLSVW  580 (792)
T ss_pred             cccc---CcccchhhcCCCcEEEEecCCEEEEecCCChhhhhcccc--ccccchHhHhhhcccccccceeeccCceEehH
Confidence            2233   4789999999999999999999999999883 2222211  113344444443311  122333457889999


Q ss_pred             EcCCceeEE
Q 001295         1015 SAANLKLRC 1023 (1106)
Q Consensus      1015 d~~~~~~~~ 1023 (1106)
                      ++-++.+..
T Consensus       581 Nll~~~l~w  589 (792)
T KOG1963|consen  581 NLLSMSLIW  589 (792)
T ss_pred             hhhhhheec
Confidence            998887766

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.90  E-value=4.6e-21  Score=210.50  Aligned_cols=205  Identities=18%  Similarity=0.214  Sum_probs=149.6

Q ss_pred             EEEEecCCCEEEEE-e-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCC-cEEEEEeecceEEEEec
Q 001295          815 CFALSKNDSYVMSA-S-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS-SIQIYNVRVDEVKSKLK  891 (1106)
Q Consensus       815 ~l~~s~~~~~l~~~-s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg-~v~iwd~~~~~~~~~l~  891 (1106)
                      .++++|+++.++++ . ++.|++||+.+.+.+..+.. ...+.+++|+| ++++++++..++ .+.+||..+++....+.
T Consensus        77 ~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~  154 (300)
T TIGR03866        77 LFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVL  154 (300)
T ss_pred             EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEE
Confidence            45677777766544 3 67888888888776666653 23468899999 888998888775 56788998887766543


Q ss_pred             CcccCeeEEEEecCCCEEEEE-cCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE--EeCCeEE
Q 001295          892 GHSKRITGLAFSHALNVLVSS-GADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHETQLA  968 (1106)
Q Consensus       892 ~h~~~V~~l~~s~d~~~l~s~-s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~--~~d~~v~  968 (1106)
                      . ...+.+++|+||+++|+.+ ..++.|++||+.+++.......... +..........++|+|+++++++  +.++.+.
T Consensus       155 ~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~  232 (300)
T TIGR03866       155 V-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIP-GVHPEAVQPVGIKLTKDGKTAFVALGPANRVA  232 (300)
T ss_pred             c-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeeccc-ccccccCCccceEECCCCCEEEEEcCCCCeEE
Confidence            2 2346789999999988544 5699999999998754322111111 10011123457899999998655  4567899


Q ss_pred             EEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEE-cCCeEEEEEcCCceeEEeeC
Q 001295          969 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus       969 i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s-~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
                      +||+.+++.+..+.   +...+.+++|+|+|++|++++ .+++|++||+.+++.+.++.
T Consensus       233 v~d~~~~~~~~~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~  288 (300)
T TIGR03866       233 VVDAKTYEVLDYLL---VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK  288 (300)
T ss_pred             EEECCCCcEEEEEE---eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence            99999988876553   245799999999999998764 68999999999999998887

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=1.5e-22  Score=206.74  Aligned_cols=296  Identities=16%  Similarity=0.260  Sum_probs=216.1

Q ss_pred             EecCC-CcEEEEeCCCCceeEEEecc-CCCeEEEeccccCCceEEEEEec-CCeEEEEeCCCCCceeEeeCCCCeeEEEE
Q 001295          476 TCGDD-KTIKVWDATNGAKQYIFEGH-EAPVYSVCPHHKENIQFIFSTAL-DGKIKAWLYDNLGSRVDYEAPGRWCTTMA  552 (1106)
Q Consensus       476 s~~~d-~~i~iwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  552 (1106)
                      +++.| .++.+||+++|....++++- ...-.++...   ++.+++++.. ...|.+|.+.............+      
T Consensus        12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l---~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg------   82 (476)
T KOG0646|consen   12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL---NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPG------   82 (476)
T ss_pred             ccCCCCcceeEEecCCCceeEEecCcccccchhhhhh---chhheeeecccCccccccccCchhhhhhhccccc------
Confidence            34444 45999999999999988865 2222222211   1135555544 55788998875444332222233      


Q ss_pred             EecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCC
Q 001295          553 YSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN  632 (1106)
Q Consensus       553 ~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg  632 (1106)
                                     ++.++.-+|.|.+++.|+..|.|++|.+.+|.++..+..|  ...|+|+.|+.||.+|++|+.||
T Consensus        83 ---------------~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aH--YQ~ITcL~fs~dgs~iiTgskDg  145 (476)
T KOG0646|consen   83 ---------------PVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAH--YQSITCLKFSDDGSHIITGSKDG  145 (476)
T ss_pred             ---------------ceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhh--ccceeEEEEeCCCcEEEecCCCc
Confidence                           3444555555568888889999999999999999999766  55899999999999999999999


Q ss_pred             cEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccc
Q 001295          633 GIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITE  712 (1106)
Q Consensus       633 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  712 (1106)
                      .|.+|.+.+-.   .....|.                                                           
T Consensus       146 ~V~vW~l~~lv---~a~~~~~-----------------------------------------------------------  163 (476)
T KOG0646|consen  146 AVLVWLLTDLV---SADNDHS-----------------------------------------------------------  163 (476)
T ss_pred             cEEEEEEEeec---ccccCCC-----------------------------------------------------------
Confidence            99999875431   1110000                                                           


Q ss_pred             cCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCC--CceEEEeecCceEEEeeccccccCCCCccccccCcc
Q 001295          713 ESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNS--GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQ  790 (1106)
Q Consensus       713 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~  790 (1106)
                        -..++.|                  ..|.-.|+++...+.  ..++++++.|.++++||+..                
T Consensus       164 --~~p~~~f------------------~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~----------------  207 (476)
T KOG0646|consen  164 --VKPLHIF------------------SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL----------------  207 (476)
T ss_pred             --ccceeee------------------ccCcceeEEEEecCCCccceEEEecCCceEEEEEecc----------------
Confidence              0011222                  237788888877664  45799999999999998873                


Q ss_pred             ccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCc----------------eeeeecCCCC-
Q 001295          791 LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFK----------------TMATFMPPPP-  852 (1106)
Q Consensus       791 ~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~----------------~~~~~~~~~~-  852 (1106)
                            |.++....    ....+.+++++|-+..+.+|. +|.|.+.++....                .+..+.+|.+ 
T Consensus       208 ------g~LLlti~----fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~  277 (476)
T KOG0646|consen  208 ------GVLLLTIT----FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENE  277 (476)
T ss_pred             ------ceeeEEEe----cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCC
Confidence                  33332211    577899999999999999998 8999988875322                3345678887 


Q ss_pred             -CeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCC
Q 001295          853 -AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL  906 (1106)
Q Consensus       853 -~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~  906 (1106)
                       .|+|++++- ||.+|++|+.||.|+|||+.+.++++++..-.++|+.+.+.|-.
T Consensus       278 ~~ITcLais~-DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~  331 (476)
T KOG0646|consen  278 SAITCLAIST-DGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLE  331 (476)
T ss_pred             cceeEEEEec-CccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccc
Confidence             999999999 99999999999999999999999999998778899999996643

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=1.3e-21  Score=189.49  Aligned_cols=284  Identities=14%  Similarity=0.174  Sum_probs=210.5

Q ss_pred             CCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeC
Q 001295          409 KDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA  488 (1106)
Q Consensus       409 ~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~  488 (1106)
                      ......|+.|.|+|.+..|++++.||++++||+...+...    .-.|..++.+++|.++.+   +++|+.||.|+.+|+
T Consensus        10 npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~----~~~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dl   82 (323)
T KOG1036|consen   10 NPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL----KFKHGAPLLDCAFADEST---IVTGGLDGQVRRYDL   82 (323)
T ss_pred             CCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh----heecCCceeeeeccCCce---EEEeccCceEEEEEe
Confidence            3457789999999999999999999999999999875433    235899999999998665   899999999999999


Q ss_pred             CCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccc
Q 001295          489 TNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS  568 (1106)
Q Consensus       489 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~  568 (1106)
                      .++.... +..|..+|.++...+..  ..+++||.|++|++||.+.......+.... .|.++..               
T Consensus        83 n~~~~~~-igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v---------------  143 (323)
T KOG1036|consen   83 NTGNEDQ-IGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMDV---------------  143 (323)
T ss_pred             cCCccee-eccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccCc-eEEEEec---------------
Confidence            9887544 44599999999986544  579999999999999998643333333222 3444333               


Q ss_pred             eeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhh
Q 001295          569 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRT  648 (1106)
Q Consensus       569 i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  648 (1106)
                              .++.|+.|+.+..|.+||+++...........-.-.++|+++-|++.-+++++-||.|.+=.+... +....
T Consensus       144 --------~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s-~~~~s  214 (323)
T KOG1036|consen  144 --------SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDS-EEAQS  214 (323)
T ss_pred             --------cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCc-hHHhh
Confidence                    345699999999999999988654442222222235789999999888999999999887554433 11110


Q ss_pred             hcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCC
Q 001295          649 FENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSE  728 (1106)
Q Consensus       649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~  728 (1106)
                      .+ .             +|.+                                                           
T Consensus       215 kk-y-------------aFkC-----------------------------------------------------------  221 (323)
T KOG1036|consen  215 KK-Y-------------AFKC-----------------------------------------------------------  221 (323)
T ss_pred             hc-e-------------eEEe-----------------------------------------------------------
Confidence            00 0             0000                                                           


Q ss_pred             CccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCC
Q 001295          729 PNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSN  808 (1106)
Q Consensus       729 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  808 (1106)
                                   |       .-..++          .                                         .
T Consensus       222 -------------H-------r~~~~~----------~-----------------------------------------~  230 (323)
T KOG1036|consen  222 -------------H-------RLSEKD----------T-----------------------------------------E  230 (323)
T ss_pred             -------------e-------ecccCC----------c-----------------------------------------e
Confidence                         0       000000          0                                         0


Q ss_pred             CCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeC
Q 001295          809 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD  872 (1106)
Q Consensus       809 ~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~  872 (1106)
                      .-.+|.+++|+|--+.+++|+ ||.|.+||..+.+.+..+..-...|.+++|+. +|..||+|+.
T Consensus       231 ~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~-dG~~LAia~s  294 (323)
T KOG1036|consen  231 IIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSM-DGSLLAIASS  294 (323)
T ss_pred             EEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEecc-CCCeEEEEec
Confidence            234578899999999999998 99999999999999988887778899999999 9999999873

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=6.2e-22  Score=191.31  Aligned_cols=295  Identities=17%  Similarity=0.221  Sum_probs=217.5

Q ss_pred             eEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCcee
Q 001295          415 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ  494 (1106)
Q Consensus       415 V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~  494 (1106)
                      -.|+.||+.|.+||+|+.||.|.|||+.|...-+   .+.+|..+|++++||+||+  .|+|++.|..|.+||+..|.++
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l  100 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL  100 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence            7899999999999999999999999999866333   6889999999999999999  8999999999999999999999


Q ss_pred             EEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEE
Q 001295          495 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF  574 (1106)
Q Consensus       495 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~  574 (1106)
                      +.+. ...+|+.+.|+|......+++ -.+..-.+-++....           -..+...+++..-.      ...+..|
T Consensus       101 ~rir-f~spv~~~q~hp~k~n~~va~-~~~~sp~vi~~s~~~-----------h~~Lp~d~d~dln~------sas~~~f  161 (405)
T KOG1273|consen  101 KRIR-FDSPVWGAQWHPRKRNKCVAT-IMEESPVVIDFSDPK-----------HSVLPKDDDGDLNS------SASHGVF  161 (405)
T ss_pred             eEEE-ccCccceeeeccccCCeEEEE-EecCCcEEEEecCCc-----------eeeccCCCcccccc------ccccccc
Confidence            9887 778999999998876444443 333323333333211           11222223332111      1122358


Q ss_pred             cCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhccccc
Q 001295          575 DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY  654 (1106)
Q Consensus       575 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  654 (1106)
                      ++.|+++++|...|.+.++|..+.+++..++... ...|..+.++..|+.|+.-+.|..||.|++..-...     +   
T Consensus       162 dr~g~yIitGtsKGkllv~~a~t~e~vas~rits-~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~-----~---  232 (405)
T KOG1273|consen  162 DRRGKYIITGTSKGKLLVYDAETLECVASFRITS-VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDE-----G---  232 (405)
T ss_pred             cCCCCEEEEecCcceEEEEecchheeeeeeeech-heeeeEEEEeccCcEEEEecCCceEEEEehhhhccc-----C---
Confidence            8889999999999999999999999998887553 246888999999999999999999999987532000     0   


Q ss_pred             ccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCcccee
Q 001295          655 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS  734 (1106)
Q Consensus       655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~  734 (1106)
                                                                                 .++.+           ...  
T Consensus       233 -----------------------------------------------------------r~~e~-----------e~~--  240 (405)
T KOG1273|consen  233 -----------------------------------------------------------RDGEV-----------EPE--  240 (405)
T ss_pred             -----------------------------------------------------------ccCCc-----------Chh--
Confidence                                                                       00000           000  


Q ss_pred             cccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCee
Q 001295          735 LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP  814 (1106)
Q Consensus       735 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~  814 (1106)
                             |                                               ++-|+             -..-.-.
T Consensus       241 -------~-----------------------------------------------K~qDv-------------VNk~~Wk  253 (405)
T KOG1273|consen  241 -------H-----------------------------------------------KLQDV-------------VNKLQWK  253 (405)
T ss_pred             -------H-----------------------------------------------HHHHH-------------Hhhhhhh
Confidence                   0                                               00000             0222335


Q ss_pred             EEEEecCCCEEEEEe--CCeEEEEEcCCCceeeeecCCC-CCeeEEEEecCCCceEEEeeCCCcEEEEEeec
Q 001295          815 CFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV  883 (1106)
Q Consensus       815 ~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~-~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~  883 (1106)
                      +++||.+|.|++.++  ...++||....|.+++.+.|.. .....+.|.| -...+++- ..|.|+||....
T Consensus       254 ~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp-~rp~i~si-~sg~v~iw~~~~  323 (405)
T KOG1273|consen  254 KCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHP-VRPIIASI-ASGVVYIWAVVQ  323 (405)
T ss_pred             heeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeeccccc-ceeeeeec-cCCceEEEEeec
Confidence            688999999999887  4779999999999999999887 4577899999 66677766 789999998653

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.90  E-value=7e-22  Score=189.00  Aligned_cols=320  Identities=13%  Similarity=0.188  Sum_probs=225.0

Q ss_pred             ccccceEEEEEcC-CCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEe
Q 001295          741 LRATKISRLIFTN-SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS  819 (1106)
Q Consensus       741 ~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s  819 (1106)
                      .|.+.|.++.+.+ .|+++++++.||.|.+||++..........++..         -..+.. ....+|...|..+.|-
T Consensus        41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~---------~c~v~~-~h~~~Hky~iss~~Wy  110 (397)
T KOG4283|consen   41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKH---------KCIVAK-QHENGHKYAISSAIWY  110 (397)
T ss_pred             cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceehe---------eeeccc-cCCccceeeeeeeEEe
Confidence            4889999999987 6899999999999999999864422221111110         000111 1112488899999999


Q ss_pred             cCCC-EEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCC--CceEEEeeCCCcEEEEEeecceEEEEecCccc
Q 001295          820 KNDS-YVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQD--NNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK  895 (1106)
Q Consensus       820 ~~~~-~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d--~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~  895 (1106)
                      |-.. .+.+++ |.+++|||..+.+....|+ -.+.|.+-++||..  .-++|+|..|-.|++-|+.+|.+-..|.||.+
T Consensus       111 P~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~  189 (397)
T KOG4283|consen  111 PIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD  189 (397)
T ss_pred             eecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC
Confidence            8544 555666 9999999999988877776 45568888888732  24789999999999999999999999999999


Q ss_pred             CeeEEEEecCCCE-EEEEcCCCcEEEEeCCCccc-------ccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCe
Q 001295          896 RITGLAFSHALNV-LVSSGADSQLCVWSSDGWEK-------QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQ  966 (1106)
Q Consensus       896 ~V~~l~~s~d~~~-l~s~s~Dg~i~vwd~~~~~~-------~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~  966 (1106)
                      .|.+|.|+|...+ |++|+.||.|++||+..-..       .........+......+.+..++|+.||.++++ +.|..
T Consensus       190 ~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r  269 (397)
T KOG4283|consen  190 GVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDR  269 (397)
T ss_pred             ceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccc
Confidence            9999999998765 78999999999999976310       000111111112223357889999999999999 79999


Q ss_pred             EEEEecCCceEee-ecccCCCCCC---eeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccc
Q 001295          967 LAIFETTKLECVK-QWVPRESSAP---ITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHP 1042 (1106)
Q Consensus       967 v~i~d~~~~~~~~-~~~~~~h~~~---v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1042 (1106)
                      +++|+..+|+-.. .+....|...   -..+. +.+...++.--.|+.+.++++-.|+.+..+.       +| ...+. 
T Consensus       270 ~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~-------~h-~k~i~-  339 (397)
T KOG4283|consen  270 IRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLS-------TH-LKRIN-  339 (397)
T ss_pred             eEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeee-------cc-cceee-
Confidence            9999998876422 2211122111   11133 4444455545567999999999999998887       32 22244 


Q ss_pred             eEEEEeCCCCCEEEEEeCCCcEEEEeecCCCCccCCCCCCCCCCCC
Q 001295         1043 LVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTS 1088 (1106)
Q Consensus      1043 ~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~~~~~~~~~~~~~~~~ 1088 (1106)
                       ...|.| |=+.+.+|..|+++..|-+.-.     ++.+-+.+...
T Consensus       340 -c~~~~~-~fq~~~tg~~d~ni~~w~p~l~-----~pt~~~d~~t~  378 (397)
T KOG4283|consen  340 -CAAYRP-DFEQCFTGDMNGNIYMWSPALK-----SPTKISDLETR  378 (397)
T ss_pred             -EEeecC-chhhhhccccCCcccccccccc-----CCccccccccc
Confidence             566666 6778999999999999987333     35555554443

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.90  E-value=1.7e-22  Score=213.40  Aligned_cols=435  Identities=16%  Similarity=0.152  Sum_probs=275.1

Q ss_pred             EEEEcc---CCCEEEEEeCCCeEEEEEccCCce---eeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCC
Q 001295          417 RVIWSP---DGSLFGVAYSRHIVQIYSYHGGDE---VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN  490 (1106)
Q Consensus       417 ~l~~sp---dg~~las~~~d~~v~iwd~~~~~~---~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~  490 (1106)
                      +..|++   ....||.+.+||.|.++|......   .+++.....|...|..+.|.| |+. .|++++.|.++++||+++
T Consensus        54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~-~lVsasGDsT~r~Wdvk~  131 (720)
T KOG0321|consen   54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GES-LLVSASGDSTIRPWDVKT  131 (720)
T ss_pred             cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-Cce-eEEEccCCceeeeeeecc
Confidence            366766   345788999999999999875322   123445678999999999999 554 899999999999999999


Q ss_pred             CceeEE--EeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccc
Q 001295          491 GAKQYI--FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS  568 (1106)
Q Consensus       491 ~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~  568 (1106)
                      ++++..  +.||.+.|.++||.+... ..|++|+.||.|.+||++-..... +....            .+++.++...+
T Consensus       132 s~l~G~~~~~GH~~SvkS~cf~~~n~-~vF~tGgRDg~illWD~R~n~~d~-~e~~~------------~~~~~~~n~~p  197 (720)
T KOG0321|consen  132 SRLVGGRLNLGHTGSVKSECFMPTNP-AVFCTGGRDGEILLWDCRCNGVDA-LEEFD------------NRIYGRHNTAP  197 (720)
T ss_pred             ceeecceeecccccccchhhhccCCC-cceeeccCCCcEEEEEEeccchhh-HHHHh------------hhhhccccCCC
Confidence            998876  899999999999987654 799999999999999998543110 00000            00000000000


Q ss_pred             eeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCe---EEEccCCCEEEEEeC-CCcEEEEEccCCch
Q 001295          569 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPR---IRFNKDGCLLAVSTN-DNGIKILATSDGIR  644 (1106)
Q Consensus       569 i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~---v~~s~~~~~l~~~~~-dg~i~iwd~~~~~~  644 (1106)
                            .|..  .    ....++-|-+..             ..|.+   +.+..|...||+++. |+.|+|||++....
T Consensus       198 ------tpsk--p----~~kr~~k~kA~s-------------~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~  252 (720)
T KOG0321|consen  198 ------TPSK--P----LKKRIRKWKAAS-------------NTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYT  252 (720)
T ss_pred             ------CCCc--h----hhcccccccccc-------------CceeeeeEEEEEeccceeeeccCCCcceEEEeeccccc
Confidence                  0000  0    001122222211             12333   556678888998887 99999999987632


Q ss_pred             hhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecC
Q 001295          645 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT  724 (1106)
Q Consensus       645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~  724 (1106)
                      ..+.-......                                                                   +.
T Consensus       253 ~~r~ep~~~~~-------------------------------------------------------------------~~  265 (720)
T KOG0321|consen  253 AYRQEPRGSDK-------------------------------------------------------------------YP  265 (720)
T ss_pred             ccccCCCcccC-------------------------------------------------------------------cc
Confidence            22211000000                                                                   00


Q ss_pred             CCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCcccccc
Q 001295          725 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV  804 (1106)
Q Consensus       725 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  804 (1106)
                                  .. ......+.++.....|.++++.+.|+.|+.|++......+.+..            .|.+     
T Consensus       266 ------------t~-skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~------------sg~~-----  315 (720)
T KOG0321|consen  266 ------------TH-SKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEF------------SGKL-----  315 (720)
T ss_pred             ------------Cc-ccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhc------------cCcc-----
Confidence                        00 00234577888888899999999999999999886554443321            1111     


Q ss_pred             CCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCce-eeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEee
Q 001295          805 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT-MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR  882 (1106)
Q Consensus       805 ~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~-~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~  882 (1106)
                          ....-..-..+||+.++++|+ |....+|.+.+.+. ...+.+|...|++++|.|-.-.-+|++++|-.++||++.
T Consensus       316 ----~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~  391 (720)
T KOG0321|consen  316 ----NSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLS  391 (720)
T ss_pred             ----cceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEecc
Confidence                111112235689999999999 99999999987554 455789999999999998555567778999999999986


Q ss_pred             cce--------------EEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCc
Q 001295          883 VDE--------------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDT  948 (1106)
Q Consensus       883 ~~~--------------~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~  948 (1106)
                      .+-              ....+++|...+..+.++-.+.+-..  ..+..++|...                       .
T Consensus       392 ~~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv~ss~~~t~~~p--R~~~~r~~ssP-----------------------~  446 (720)
T KOG0321|consen  392 NGLEEIYAADKDSIVYEYSRRFKGHLPQVLNVNSSLRKTYKDP--REGMNRISSSP-----------------------V  446 (720)
T ss_pred             Cchhhccccccchhhhhhhhhhhccccccccccccccccccch--hhhccccccCc-----------------------c
Confidence            542              12344566655555555433322221  13445555432                       2


Q ss_pred             eEEEcCCCcEEEE--E---eCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEc-----------CCeEE
Q 001295          949 RVQFHQDQIHFLV--V---HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFL-----------DATVC 1012 (1106)
Q Consensus       949 ~~~~s~dg~~l~~--~---~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~-----------Dg~i~ 1012 (1106)
                      .++..|++.-...  +   ..-.|...+....+....-...+|-..|....+++.+..+++++-           ++.+.
T Consensus       447 s~a~~~s~~s~~~~~~~t~qt~~i~~~p~kr~~~~ss~~s~~~~~Svs~~d~ss~~s~~~s~SP~~~~~stpp~sets~~  526 (720)
T KOG0321|consen  447 SLACSPSGASDDCGYGVTDQTSGIVVFPTKRNKPSSSRGSGGHLSSVSAEDWSSEKSQLASRSPQKNRGSTPPISETSVN  526 (720)
T ss_pred             chhcCcCCcccccCCCcccccccceecchhccCccccccccccccccccCCCccccccccccCcccccCCCCCcCccccc
Confidence            3344444443333  1   112344555544444333333356677777778777778888887           78888


Q ss_pred             EEEcCC
Q 001295         1013 VFSAAN 1018 (1106)
Q Consensus      1013 vwd~~~ 1018 (1106)
                      +|....
T Consensus       527 s~~s~l  532 (720)
T KOG0321|consen  527 SPNSSL  532 (720)
T ss_pred             cccccc
Confidence            887643

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=1.3e-21  Score=198.97  Aligned_cols=249  Identities=13%  Similarity=0.199  Sum_probs=195.2

Q ss_pred             cccceEEEEEcCCCc-eEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEec
Q 001295          742 RATKISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK  820 (1106)
Q Consensus       742 ~~~~i~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~  820 (1106)
                      ...+|.+.+|.|+|. .+++++....++.||+.+.+...-..                     +.+. ....+....+|+
T Consensus       256 ~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~---------------------~~g~-e~~~~e~FeVSh  313 (514)
T KOG2055|consen  256 EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKP---------------------PYGV-EEKSMERFEVSH  313 (514)
T ss_pred             ccCccceeeecCCCceEEEecccceEEEEeeccccccccccC---------------------CCCc-ccchhheeEecC
Confidence            346788999999999 88888888999999886433211100                     1110 234577889999


Q ss_pred             CCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCccc-Cee
Q 001295          821 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK-RIT  898 (1106)
Q Consensus       821 ~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~-~V~  898 (1106)
                      ++++|+..+ .|.|.+....+++.+.+++ ..+.|..++|+. |++.|.+.+.+|.|++||+....++..+....+ .=+
T Consensus       314 d~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gt  391 (514)
T KOG2055|consen  314 DSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGT  391 (514)
T ss_pred             CCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCcccee
Confidence            999999998 7999999999999998887 567899999999 788888888899999999999999988864322 235


Q ss_pred             EEEEecCCCEEEEEcCCCcEEEEeCCCccccc-ceeecccCCCCCCCCCCceEEEcCCCcEEEEE---eCCeEEEEecCC
Q 001295          899 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQK-NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTK  974 (1106)
Q Consensus       899 ~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~---~d~~v~i~d~~~  974 (1106)
                      ++|.|+++.+||+|+..|.|.|||.++..... .+++.....-.   ..|..+.|++|++.||.+   ....+++-.+.+
T Consensus       392 s~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt---t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS  468 (514)
T KOG2055|consen  392 SLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT---TAITSLQFNHDAQILAIASRVKKNALRLVHVPS  468 (514)
T ss_pred             eeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhh---eeeeeeeeCcchhhhhhhhhccccceEEEeccc
Confidence            78888999999999999999999976532111 11222222222   478999999999999984   567899999999


Q ss_pred             ceEeeecccCCC-CCCeeEEEECCCCCEEEEEEcCCeEEEEEcC
Q 001295          975 LECVKQWVPRES-SAPITHATFSCDSQLVYACFLDATVCVFSAA 1017 (1106)
Q Consensus       975 ~~~~~~~~~~~h-~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~ 1017 (1106)
                      ......|..... -+.|+||+|||.|.+||.|.++|.|.+|.+.
T Consensus       469 ~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  469 CTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             eeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            888888875432 4579999999999999999999999999864

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.89  E-value=3.5e-21  Score=203.39  Aligned_cols=456  Identities=12%  Similarity=0.149  Sum_probs=285.7

Q ss_pred             CcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEe
Q 001295          352 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY  431 (1106)
Q Consensus       352 ~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~  431 (1106)
                      .|..++|-|||..|++.+  +..+.|||+..|..+.                   ++++|.+.|+|++||.||+++|+|+
T Consensus        14 ci~d~afkPDGsqL~lAA--g~rlliyD~ndG~llq-------------------tLKgHKDtVycVAys~dGkrFASG~   72 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA--GSRLLVYDTSDGTLLQ-------------------PLKGHKDTVYCVAYAKDGKRFASGS   72 (1081)
T ss_pred             chheeEECCCCceEEEec--CCEEEEEeCCCccccc-------------------ccccccceEEEEEEccCCceeccCC
Confidence            789999999999866654  4689999999998887                   4899999999999999999999999


Q ss_pred             CCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccc
Q 001295          432 SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHH  511 (1106)
Q Consensus       432 ~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~  511 (1106)
                      .|+.|.+|+-.-...++    + .|.+.|.|+.|+|-..  .++|++-. ..-+|........+ .+ ....+.+++|  
T Consensus        73 aDK~VI~W~~klEG~Lk----Y-SH~D~IQCMsFNP~~h--~LasCsLs-dFglWS~~qK~V~K-~k-ss~R~~~CsW--  140 (1081)
T KOG1538|consen   73 ADKSVIIWTSKLEGILK----Y-SHNDAIQCMSFNPITH--QLASCSLS-DFGLWSPEQKSVSK-HK-SSSRIICCSW--  140 (1081)
T ss_pred             CceeEEEecccccceee----e-ccCCeeeEeecCchHH--Hhhhcchh-hccccChhhhhHHh-hh-hheeEEEeee--
Confidence            99999999876433332    2 5999999999999998  68888753 45688755433221 11 2344555665  


Q ss_pred             cCCceEEEEEecCCeEEEEeCCCCCceeEeeC---CCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCC
Q 001295          512 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEA---PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF  588 (1106)
Q Consensus       512 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  588 (1106)
                      +.||.+++.|-.+|+|.+-+-. ++....+..   .+.+|.+++|+|...   .|             ....++...-..
T Consensus       141 tnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg---~G-------------~~di~aV~DW~q  203 (1081)
T KOG1538|consen  141 TNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSG---EG-------------RNDILAVADWGQ  203 (1081)
T ss_pred             cCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCC---CC-------------ccceEEEEeccc
Confidence            6778999999999999987543 333333333   455778888877653   00             112466677777


Q ss_pred             eEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcC
Q 001295          589 SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTIS  668 (1106)
Q Consensus       589 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  668 (1106)
                      ++.+|.+ +|+.+..-..-+  ..-.|+.+-++|.++..|+.|+.+.+|-- .|..+ .                     
T Consensus       204 TLSFy~L-sG~~Igk~r~L~--FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrL-G---------------------  257 (1081)
T KOG1538|consen  204 TLSFYQL-SGKQIGKDRALN--FDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRL-G---------------------  257 (1081)
T ss_pred             eeEEEEe-cceeecccccCC--CCchhheeccCCcEEEEccCCCceEEEee-cCeEE-e---------------------
Confidence            8888887 455544222111  13468999999999999999999999842 22100 0                     


Q ss_pred             chhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEE
Q 001295          669 PISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISR  748 (1106)
Q Consensus       669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~  748 (1106)
                                                                      ++                     ......|..
T Consensus       258 ------------------------------------------------Tv---------------------g~~D~WIWt  268 (1081)
T KOG1538|consen  258 ------------------------------------------------TV---------------------GEQDSWIWT  268 (1081)
T ss_pred             ------------------------------------------------ec---------------------cccceeEEE
Confidence                                                            00                     013467888


Q ss_pred             EEEcCCCceEEEeecCceEEEeeccccccC-------CC--------------------------------Ccccc---c
Q 001295          749 LIFTNSGNAILALASNAIHLLWKWQRTERN-------SS--------------------------------GKATA---S  786 (1106)
Q Consensus       749 ~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~-------~~--------------------------------~~~~~---~  786 (1106)
                      ++..|++++++.|+.||+|-.|++......       ..                                ...++   .
T Consensus       269 V~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnrLAVQLp  348 (1081)
T KOG1538|consen  269 VQAKPNSQYVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNRLAVQLP  348 (1081)
T ss_pred             EEEccCCceEEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhhheeccc
Confidence            999999999999999999998887543100       00                                00000   0


Q ss_pred             cCccccCCCCCCccccccCCCCCCCCeeEEEEe---cCCCEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEE--ec
Q 001295          787 VAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS---KNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAF--HP  861 (1106)
Q Consensus       787 ~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s---~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~--s~  861 (1106)
                      ..+.++...++.......+-  ...-+..+.+|   -.+..++.+.+..+..+|...-+. +... -.+-|.-+..  -|
T Consensus       349 eki~iYel~se~~~~mhY~v--~ekI~kkf~cSLlVVc~~HiVlCqekrLqClDF~Gvk~-ReW~-M~S~iRYikV~GGP  424 (1081)
T KOG1538|consen  349 EKILIYELYSEDLSDMHYRV--KEKIIKKFECSLLVVCANHIVLCQEKRLQCLDFSGVKE-REWQ-MESLIRYIKVIGGP  424 (1081)
T ss_pred             ceEEEEeccccccccchhHH--HHHHHhhccceEEEEEcCeEEEEcccceeeecccchhh-hhhh-HHHHHHhhhhhcCC
Confidence            02233333333211110000  00000001111   134455556566677777653211 1100 0000111111  12


Q ss_pred             CCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCC
Q 001295          862 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT  941 (1106)
Q Consensus       862 ~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~  941 (1106)
                      .+..-|++|..||.|.-.=+.+.-++- +......|.|+..+...+.||+..+.++..++|+.+++.    .++.     
T Consensus       425 ~gREgL~vGlknGqV~kiF~dN~~PiL-l~~~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~el----L~QE-----  494 (1081)
T KOG1538|consen  425 PGREGLLVGLKNGQVLKIFVDNLFPIL-LLKQATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKEL----LFQE-----  494 (1081)
T ss_pred             CCcceeEEEecCCcEEEEEecCCchhh-eecccceeEEeeccCCcceEEEEccCCeEEEEEccCCce----Eeec-----
Confidence            245678889999977544334332222 223456799999999999999999999999999999653    2222     


Q ss_pred             CCCCCCceEEEcCCCcEEEE-EeCCeEEE
Q 001295          942 PTAQSDTRVQFHQDQIHFLV-VHETQLAI  969 (1106)
Q Consensus       942 ~~~~~i~~~~~s~dg~~l~~-~~d~~v~i  969 (1106)
                         ....+++|+....-+.+ +..|.+.|
T Consensus       495 ---pg~nSV~wNT~~E~MlcfT~~g~L~V  520 (1081)
T KOG1538|consen  495 ---PGANSVAWNTQCEDMLCFTGGGYLNV  520 (1081)
T ss_pred             ---CCCceEEeeccccceEEEecCCceEE
Confidence               24678888876444433 44454443

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.89  E-value=2e-21  Score=203.53  Aligned_cols=313  Identities=16%  Similarity=0.210  Sum_probs=228.5

Q ss_pred             eeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEE
Q 001295          451 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW  530 (1106)
Q Consensus       451 ~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw  530 (1106)
                      ..+.||.+.|.+|...|.|.  +|++|+.||+|+||.+.+|.|++++. ..+.|.|++|++.++...|+++-.+. +.+-
T Consensus       394 lvyrGHtg~Vr~iSvdp~G~--wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~-~~iv  469 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDPSGE--WLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGEC-VLIV  469 (733)
T ss_pred             eeEeccCCeEEEEEecCCcc--eeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCc-eEEe
Confidence            45789999999999999999  89999999999999999999999887 56789999999998866666655444 5544


Q ss_pred             eCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEE----ECCCeEEEEECCCcce----eE
Q 001295          531 LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA----GDDFSIKFWDMDSVQL----LT  602 (1106)
Q Consensus       531 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~----~~d~~i~iwd~~~~~~----~~  602 (1106)
                      +..-+..+....                                  ....|+++    ..++.+..|.-.....    +.
T Consensus       470 np~~G~~~e~~~----------------------------------t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~  515 (733)
T KOG0650|consen  470 NPIFGDRLEVGP----------------------------------TKELLASAPNESEPDAAVVTWSRASLDELEKGVC  515 (733)
T ss_pred             Cccccchhhhcc----------------------------------hhhhhhcCCCccCCcccceeechhhhhhhccceE
Confidence            432221111000                                  00012222    2355777886542211    11


Q ss_pred             EEccCCCCCCcCeEEEccCCCEEEEEeCC---CcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhc
Q 001295          603 SIDADGGLPASPRIRFNKDGCLLAVSTND---NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAAT  679 (1106)
Q Consensus       603 ~~~~~~~~~~v~~v~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  679 (1106)
                      ..-.+  ...|..+.|+..|.||++..-+   ..|.|.++... ....                                
T Consensus       516 ~~I~~--~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~-~sQ~--------------------------------  560 (733)
T KOG0650|consen  516 IVIKH--PKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKR-KSQS--------------------------------  560 (733)
T ss_pred             EEEec--CCccceeeeecCCceEEEeccCCCcceEEEEecccc-cccC--------------------------------
Confidence            22222  4469999999999999987654   34555555332 0000                                


Q ss_pred             ccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEE
Q 001295          680 SAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAIL  759 (1106)
Q Consensus       680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  759 (1106)
                                                                         .+       ....+.|.++.|.|...+++
T Consensus       561 ---------------------------------------------------PF-------~kskG~vq~v~FHPs~p~lf  582 (733)
T KOG0650|consen  561 ---------------------------------------------------PF-------RKSKGLVQRVKFHPSKPYLF  582 (733)
T ss_pred             ---------------------------------------------------ch-------hhcCCceeEEEecCCCceEE
Confidence                                                               00       11456788999999999888


Q ss_pred             EeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEc
Q 001295          760 ALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNM  838 (1106)
Q Consensus       760 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~  838 (1106)
                      +++.. .|+|||+.                      .+.++...+.   ....|..++.+|.|..|+.|+ |+.+..||+
T Consensus       583 VaTq~-~vRiYdL~----------------------kqelvKkL~t---g~kwiS~msihp~GDnli~gs~d~k~~WfDl  636 (733)
T KOG0650|consen  583 VATQR-SVRIYDLS----------------------KQELVKKLLT---GSKWISSMSIHPNGDNLILGSYDKKMCWFDL  636 (733)
T ss_pred             EEecc-ceEEEehh----------------------HHHHHHHHhc---CCeeeeeeeecCCCCeEEEecCCCeeEEEEc
Confidence            87765 67888765                      3333333333   467899999999999999999 999999999


Q ss_pred             CC-CceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEee------cc---eEEEEecCcccC----eeEEEEec
Q 001295          839 MT-FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR------VD---EVKSKLKGHSKR----ITGLAFSH  904 (1106)
Q Consensus       839 ~~-~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~------~~---~~~~~l~~h~~~----V~~l~~s~  904 (1106)
                      .- .+..+++..|...+++++|++ .-.++++|+.||++.|+.-.      ..   -.+..+++|...    |..+.|+|
T Consensus       637 dlsskPyk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP  715 (733)
T KOG0650|consen  637 DLSSKPYKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHP  715 (733)
T ss_pred             ccCcchhHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccC
Confidence            84 456788899999999999999 88899999999999998632      11   245778899876    99999999


Q ss_pred             CCCEEEEEcCCCcEEEE
Q 001295          905 ALNVLVSSGADSQLCVW  921 (1106)
Q Consensus       905 d~~~l~s~s~Dg~i~vw  921 (1106)
                      ...+|+|++.||+|++|
T Consensus       716 ~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  716 RQPWLFSAGADGTIRLF  732 (733)
T ss_pred             CCceEEecCCCceEEee
Confidence            99999999999999998

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.89  E-value=2.3e-20  Score=204.90  Aligned_cols=294  Identities=12%  Similarity=0.135  Sum_probs=204.3

Q ss_pred             CCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCC
Q 001295          424 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP  503 (1106)
Q Consensus       424 g~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~  503 (1106)
                      ++.+++++.|+.|++||+.+++.+.   .+..|. .+.+++|+|+++. ++++++.++.|++||..+++.+..+..+.. 
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~---~~~~~~-~~~~l~~~~dg~~-l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-   74 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTR---TFPVGQ-RPRGITLSKDGKL-LYVCASDSDTIQVIDLATGEVIGTLPSGPD-   74 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEE---EEECCC-CCCceEECCCCCE-EEEEECCCCeEEEEECCCCcEEEeccCCCC-
Confidence            3578899999999999999887655   444443 4678999999984 346778899999999999988887765544 


Q ss_pred             eEEEeccccCCceEE-EEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEE
Q 001295          504 VYSVCPHHKENIQFI-FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  582 (1106)
Q Consensus       504 v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~  582 (1106)
                      +..++|+++  ++.+ ++++.++.|++||+.+...+..+... ..+.                     .+.++|++.+++
T Consensus        75 ~~~~~~~~~--g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~---------------------~~~~~~dg~~l~  130 (300)
T TIGR03866        75 PELFALHPN--GKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPE---------------------GMAVSPDGKIVV  130 (300)
T ss_pred             ccEEEECCC--CCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcc---------------------eEEECCCCCEEE
Confidence            456676554  4555 45567899999999875544333211 1123                     355556666787


Q ss_pred             EEECCC-eEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEe-CCCcEEEEEccCCchhhhhhcccccccccCC
Q 001295          583 AAGDDF-SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDGIRLLRTFENLAYDASRTS  660 (1106)
Q Consensus       583 ~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  660 (1106)
                      ++..++ .+.+||..+++.........   ...+++|+|++++|++++ .++.|++||+.++ +..+.+.          
T Consensus       131 ~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~-~~~~~~~----------  196 (300)
T TIGR03866       131 NTSETTNMAHFIDTKTYEIVDNVLVDQ---RPRFAEFTADGKELWVSSEIGGTVSVIDVATR-KVIKKIT----------  196 (300)
T ss_pred             EEecCCCeEEEEeCCCCeEEEEEEcCC---CccEEEECCCCCEEEEEcCCCCEEEEEEcCcc-eeeeeee----------
Confidence            777654 57788998887766553322   357799999999886554 5899999998766 2111110          


Q ss_pred             CCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCcc
Q 001295          661 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN  740 (1106)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~  740 (1106)
                                                                                                      
T Consensus       197 --------------------------------------------------------------------------------  196 (300)
T TIGR03866       197 --------------------------------------------------------------------------------  196 (300)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEec
Q 001295          741 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK  820 (1106)
Q Consensus       741 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~  820 (1106)
                                +...+.      ..                                            .......++|+|
T Consensus       197 ----------~~~~~~------~~--------------------------------------------~~~~~~~i~~s~  216 (300)
T TIGR03866       197 ----------FEIPGV------HP--------------------------------------------EAVQPVGIKLTK  216 (300)
T ss_pred             ----------eccccc------cc--------------------------------------------ccCCccceEECC
Confidence                      000000      00                                            011123577888


Q ss_pred             CCCEEEEEe--CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEe-eCCCcEEEEEeecceEEEEecCcccCe
Q 001295          821 NDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIG-MDDSSIQIYNVRVDEVKSKLKGHSKRI  897 (1106)
Q Consensus       821 ~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g-~~dg~v~iwd~~~~~~~~~l~~h~~~V  897 (1106)
                      ++++++++.  ++.|.+||..+++....+. +...+.+++|+| ++++|+++ ..+|.|++||+.+++++..+... ...
T Consensus       217 dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~-~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~  293 (300)
T TIGR03866       217 DGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTP-DEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLP  293 (300)
T ss_pred             CCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECC-CCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-ccc
Confidence            888755443  6789999998887766553 345789999999 88888776 56899999999999999998765 556


Q ss_pred             eEEEEec
Q 001295          898 TGLAFSH  904 (1106)
Q Consensus       898 ~~l~~s~  904 (1106)
                      ++++++|
T Consensus       294 ~~~~~~~  300 (300)
T TIGR03866       294 WGVVVRP  300 (300)
T ss_pred             ceeEeCC
Confidence            8888875

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.89  E-value=2.4e-22  Score=205.15  Aligned_cols=234  Identities=20%  Similarity=0.344  Sum_probs=183.6

Q ss_pred             ceeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEc
Q 001295          342 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  421 (1106)
Q Consensus       342 ~~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s  421 (1106)
                      .-.++.+|+++-..++|++...-.|++|+.|++|.+||+.......            ........+.+|+..|..++|+
T Consensus       169 Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~------------~~~~p~~~~~~h~~~VeDV~~h  236 (422)
T KOG0264|consen  169 PDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKED------------KVVDPKTIFSGHEDVVEDVAWH  236 (422)
T ss_pred             CceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCC------------ccccceEEeecCCcceehhhcc
Confidence            3456777999899999999887779999999999999998654321            0011223589999999999999


Q ss_pred             c-CCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCC-CceeEEEec
Q 001295          422 P-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-GAKQYIFEG  499 (1106)
Q Consensus       422 p-dg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~  499 (1106)
                      + +..+|++++.|+.+.|||++++ ..+......+|.+.|+|++|+|-+.. +|||||.|++|++||+++ .+++.++.+
T Consensus       237 ~~h~~lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah~~~vn~~~fnp~~~~-ilAT~S~D~tV~LwDlRnL~~~lh~~e~  314 (422)
T KOG0264|consen  237 PLHEDLFGSVGDDGKLMIWDTRSN-TSKPSHSVKAHSAEVNCVAFNPFNEF-ILATGSADKTVALWDLRNLNKPLHTFEG  314 (422)
T ss_pred             ccchhhheeecCCCeEEEEEcCCC-CCCCcccccccCCceeEEEeCCCCCc-eEEeccCCCcEEEeechhcccCceeccC
Confidence            9 7788999999999999999964 33444467899999999999999887 899999999999999996 457899999


Q ss_pred             cCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCC
Q 001295          500 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN  579 (1106)
Q Consensus       500 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~  579 (1106)
                      |...|..+.|+|..+ ..|++++.|+.+.+||+..-...............+.|       .-|.+...|..+.|+|...
T Consensus       315 H~dev~~V~WSPh~e-tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF-------~HgGH~~kV~DfsWnp~eP  386 (422)
T KOG0264|consen  315 HEDEVFQVEWSPHNE-TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLF-------IHGGHTAKVSDFSWNPNEP  386 (422)
T ss_pred             CCcceEEEEeCCCCC-ceeEecccCCcEEEEeccccccccChhhhccCCcceeE-------EecCcccccccccCCCCCC
Confidence            999999999998876 69999999999999999865544331111111222222       2333445678888888888


Q ss_pred             EEEE-EECCCeEEEEECCC
Q 001295          580 RFLA-AGDDFSIKFWDMDS  597 (1106)
Q Consensus       580 ~l~~-~~~d~~i~iwd~~~  597 (1106)
                      ++++ .++|+.+.||.+..
T Consensus       387 W~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  387 WTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             eEEEEecCCceEEEeeccc
Confidence            7655 78999999999853

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=2.3e-21  Score=197.37  Aligned_cols=292  Identities=15%  Similarity=0.246  Sum_probs=224.2

Q ss_pred             cCCeeEEEEcCCCCceEEEEecCCCcEEEEeCC--CCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCC
Q 001295          457 VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT--NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN  534 (1106)
Q Consensus       457 ~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  534 (1106)
                      .++|++|.|+|...  ++++++.|++++||-+.  ....++.+.--..+|.+.+|.+.+. ..+++++....++.||+.+
T Consensus       213 ~~~I~sv~FHp~~p--lllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~-~~i~~s~rrky~ysyDle~  289 (514)
T KOG2055|consen  213 HGGITSVQFHPTAP--LLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGH-SVIFTSGRRKYLYSYDLET  289 (514)
T ss_pred             cCCceEEEecCCCc--eEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCc-eEEEecccceEEEEeeccc
Confidence            46899999999998  89999999999999875  4556777766778999999876543 3899999999999999987


Q ss_pred             CCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcC
Q 001295          535 LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASP  614 (1106)
Q Consensus       535 ~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~  614 (1106)
                      .+....-.                  ..|.....+....+++++++++..+..|.|.+....+++.+..++..+.   |.
T Consensus       290 ak~~k~~~------------------~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~---v~  348 (514)
T KOG2055|consen  290 AKVTKLKP------------------PYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGV---VS  348 (514)
T ss_pred             cccccccC------------------CCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccE---Ee
Confidence            54332111                  1112223455667777778999999999999999999999999987654   88


Q ss_pred             eEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccC
Q 001295          615 RIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIP  694 (1106)
Q Consensus       615 ~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  694 (1106)
                      .++|+.|++.|++.+.+|.|.+||++.. .+++.+..                                           
T Consensus       349 ~~~fsSdsk~l~~~~~~GeV~v~nl~~~-~~~~rf~D-------------------------------------------  384 (514)
T KOG2055|consen  349 DFTFSSDSKELLASGGTGEVYVWNLRQN-SCLHRFVD-------------------------------------------  384 (514)
T ss_pred             eEEEecCCcEEEEEcCCceEEEEecCCc-ceEEEEee-------------------------------------------
Confidence            9999999999999999999999999876 33332211                                           


Q ss_pred             CCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccc
Q 001295          695 GMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQR  774 (1106)
Q Consensus       695 ~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~  774 (1106)
                                                   +                 ..-.-++++.++++.++++|+..|.|-|||.+.
T Consensus       385 -----------------------------~-----------------G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s  418 (514)
T KOG2055|consen  385 -----------------------------D-----------------GSVHGTSLCISLNGSYLATGSDSGIVNIYDGNS  418 (514)
T ss_pred             -----------------------------c-----------------CccceeeeeecCCCceEEeccCcceEEEeccch
Confidence                                         1                 011225678889999999999999999999764


Q ss_pred             cccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe---CCeEEEEEcCCCceeeeecCC-
Q 001295          775 TERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPP-  850 (1106)
Q Consensus       775 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~-  850 (1106)
                      .-.+...+.                +.. +  ......|+++.|++|.+.||.++   ...+++-.+.+......+... 
T Consensus       419 ~~~s~~PkP----------------ik~-~--dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n  479 (514)
T KOG2055|consen  419 CFASTNPKP----------------IKT-V--DNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSN  479 (514)
T ss_pred             hhccCCCCc----------------hhh-h--hhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCC
Confidence            322211111                111 0  12466799999999999999998   477999999887776666543 


Q ss_pred             --CCCeeEEEEecCCCceEEEeeCCCcEEEEEee
Q 001295          851 --PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR  882 (1106)
Q Consensus       851 --~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~  882 (1106)
                        -+.|+|++||| .+.++|.|..+|.|.+|.+.
T Consensus       480 ~~vg~vtc~aFSP-~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  480 TKVGHVTCMAFSP-NSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             CcccceEEEEecC-CCceEEeecCCCceeeEeec
Confidence              34689999999 88999999999999999864

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.89  E-value=7.1e-21  Score=201.12  Aligned_cols=458  Identities=14%  Similarity=0.185  Sum_probs=284.9

Q ss_pred             CeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCce
Q 001295          414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK  493 (1106)
Q Consensus       414 ~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~  493 (1106)
                      .|..++|-|||..|+.+. +..+.+||...|..+.   ++++|.+.|++++|+.||+  .++||+.|+.|.+|+-+- +-
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llq---tLKgHKDtVycVAys~dGk--rFASG~aDK~VI~W~~kl-EG   86 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQ---PLKGHKDTVYCVAYAKDGK--RFASGSADKSVIIWTSKL-EG   86 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCCccccc---ccccccceEEEEEEccCCc--eeccCCCceeEEEecccc-cc
Confidence            799999999999998875 4559999999998776   7999999999999999999  899999999999998542 22


Q ss_pred             eEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEE
Q 001295          494 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  573 (1106)
Q Consensus       494 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~  573 (1106)
                      +-.+ .|.+.|.|+.|+|-.  +.|++++.. ..-+|.....                       .+........+.+++
T Consensus        87 ~LkY-SH~D~IQCMsFNP~~--h~LasCsLs-dFglWS~~qK-----------------------~V~K~kss~R~~~Cs  139 (1081)
T KOG1538|consen   87 ILKY-SHNDAIQCMSFNPIT--HQLASCSLS-DFGLWSPEQK-----------------------SVSKHKSSSRIICCS  139 (1081)
T ss_pred             eeee-ccCCeeeEeecCchH--HHhhhcchh-hccccChhhh-----------------------hHHhhhhheeEEEee
Confidence            2233 399999999998765  678888753 2456644321                       111111122455566


Q ss_pred             EcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCC-----CEEEEEeCCCcEEEEEccCCchhhhh
Q 001295          574 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG-----CLLAVSTNDNGIKILATSDGIRLLRT  648 (1106)
Q Consensus       574 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~-----~~l~~~~~dg~i~iwd~~~~~~~~~~  648 (1106)
                      |..||.+++.|-.+|+|.+-+....+.+..-...+...+|.+++|+|..     ..+++.....++.++.+... .    
T Consensus       140 WtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~-~----  214 (1081)
T KOG1538|consen  140 WTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK-Q----  214 (1081)
T ss_pred             ecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce-e----
Confidence            6677779999999999999986444434333333445689999999953     34555555555555543221 0    


Q ss_pred             hcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCC
Q 001295          649 FENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSE  728 (1106)
Q Consensus       649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~  728 (1106)
                                                                                                      
T Consensus       215 --------------------------------------------------------------------------------  214 (1081)
T KOG1538|consen  215 --------------------------------------------------------------------------------  214 (1081)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCC
Q 001295          729 PNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSN  808 (1106)
Q Consensus       729 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  808 (1106)
                      .++-+.+       .-.-.++.+.++|.+++.|+.|+.+.+|.-.                       |..+.. +.  .
T Consensus       215 Igk~r~L-------~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-----------------------GvrLGT-vg--~  261 (1081)
T KOG1538|consen  215 IGKDRAL-------NFDPCCISYFTNGEYILLGGSDKQLSLFTRD-----------------------GVRLGT-VG--E  261 (1081)
T ss_pred             ecccccC-------CCCchhheeccCCcEEEEccCCCceEEEeec-----------------------CeEEee-cc--c
Confidence            0001111       1223578889999999999999999998643                       211111 11  1


Q ss_pred             CCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeee------------------e-cCCCCCee------EEEEecC
Q 001295          809 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMAT------------------F-MPPPPAAT------FLAFHPQ  862 (1106)
Q Consensus       809 ~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~------------------~-~~~~~~v~------~l~~s~~  862 (1106)
                      ....|+.++..|++++++.|+ ||+|..|++........                  + .+....|.      .+++-  
T Consensus       262 ~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiY--  339 (1081)
T KOG1538|consen  262 QDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIY--  339 (1081)
T ss_pred             cceeEEEEEEccCCceEEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhh--
Confidence            678999999999999999999 99999999753221100                  0 01111111      12221  


Q ss_pred             CCceEEEeeCCCcEEEEEeecceEEEEe-cCcccCeeEEEEe---cCCCEEEEEcCCCcEEEEeCCCcccccce------
Q 001295          863 DNNIIAIGMDDSSIQIYNVRVDEVKSKL-KGHSKRITGLAFS---HALNVLVSSGADSQLCVWSSDGWEKQKNR------  932 (1106)
Q Consensus       863 d~~~la~g~~dg~v~iwd~~~~~~~~~l-~~h~~~V~~l~~s---~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~------  932 (1106)
                       .+.||+--.+ .|.||.+.+++....- +-...-+..+.+|   -.++.|+.+ .|..+.-+|+..-+...+.      
T Consensus       340 -rnrLAVQLpe-ki~iYel~se~~~~mhY~v~ekI~kkf~cSLlVVc~~HiVlC-qekrLqClDF~Gvk~ReW~M~S~iR  416 (1081)
T KOG1538|consen  340 -RNRLAVQLPE-KILIYELYSEDLSDMHYRVKEKIIKKFECSLLVVCANHIVLC-QEKRLQCLDFSGVKEREWQMESLIR  416 (1081)
T ss_pred             -hhhheecccc-eEEEEeccccccccchhHHHHHHHhhccceEEEEEcCeEEEE-cccceeeecccchhhhhhhHHHHHH
Confidence             2345555433 6888888765432110 0000111111111   123445444 4566888887764433321      


Q ss_pred             eecccCCCCCCCCCCceEEEcCCC-cEEEEE-eCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCe
Q 001295          933 FLQIPTGRTPTAQSDTRVQFHQDQ-IHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT 1010 (1106)
Q Consensus       933 ~~~~~~~~~~~~~~i~~~~~s~dg-~~l~~~-~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~ 1010 (1106)
                      .+.+..|              |-| .-|++| .+|.|.-.-+++.-.+...   .....|.|+.++...+.||+..+.++
T Consensus       417 YikV~GG--------------P~gREgL~vGlknGqV~kiF~dN~~PiLl~---~~~tAvrClDINA~R~kLAvVDD~~~  479 (1081)
T KOG1538|consen  417 YIKVIGG--------------PPGREGLLVGLKNGQVLKIFVDNLFPILLL---KQATAVRCLDINASRKKLAVVDDNDT  479 (1081)
T ss_pred             hhhhhcC--------------CCCcceeEEEecCCcEEEEEecCCchhhee---cccceeEEeeccCCcceEEEEccCCe
Confidence            1222222              222 223343 5655432223333222221   22668999999999999999999999


Q ss_pred             EEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEe
Q 001295         1011 VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL 1059 (1106)
Q Consensus      1011 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~ 1059 (1106)
                      ..++|+.+++.+.+-.       |     .+  +++|.....++|+-.+
T Consensus       480 c~v~DI~t~elL~QEp-------g-----~n--SV~wNT~~E~MlcfT~  514 (1081)
T KOG1538|consen  480 CLVYDIDTKELLFQEP-------G-----AN--SVAWNTQCEDMLCFTG  514 (1081)
T ss_pred             EEEEEccCCceEeecC-------C-----Cc--eEEeeccccceEEEec
Confidence            9999999999886533       2     44  6677765555554333

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=1.4e-20  Score=181.93  Aligned_cols=275  Identities=12%  Similarity=0.185  Sum_probs=207.9

Q ss_pred             CCCcceeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEE
Q 001295          338 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR  417 (1106)
Q Consensus       338 ~~~~~~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~  417 (1106)
                      ..|..+..++.|.. -.|+.||+.|.+ ||+|..||.|.|||+.|...-.                   ++.+|..+|.+
T Consensus        12 ~~PEel~~tld~~~-a~~~~Fs~~G~~-lAvGc~nG~vvI~D~~T~~iar-------------------~lsaH~~pi~s   70 (405)
T KOG1273|consen   12 EYPEELTHTLDNPL-AECCQFSRWGDY-LAVGCANGRVVIYDFDTFRIAR-------------------MLSAHVRPITS   70 (405)
T ss_pred             cChHhhceeccCCc-cceEEeccCcce-eeeeccCCcEEEEEccccchhh-------------------hhhccccceeE
Confidence            34667777888766 899999999995 9999999999999998865332                   58999999999


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEE
Q 001295          418 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF  497 (1106)
Q Consensus       418 l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  497 (1106)
                      ++||+||+.|+++|.|..|.+||+..|.+++++    ....+|+.+.|.|...+..++ .-.+..-.+-++..++. ..+
T Consensus        71 l~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri----rf~spv~~~q~hp~k~n~~va-~~~~~sp~vi~~s~~~h-~~L  144 (405)
T KOG1273|consen   71 LCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI----RFDSPVWGAQWHPRKRNKCVA-TIMEESPVVIDFSDPKH-SVL  144 (405)
T ss_pred             EEecCCCCEeeeecCCceeEEEeccCCCceeEE----EccCccceeeeccccCCeEEE-EEecCCcEEEEecCCce-eec
Confidence            999999999999999999999999999977643    246799999999987763444 33344455555544221 111


Q ss_pred             ec-cCCCeE--EEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCC-CeeEEEEEecCCCeEEEeeeccc-----
Q 001295          498 EG-HEAPVY--SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG-RWCTTMAYSADGTRTYQGFRKRS-----  568 (1106)
Q Consensus       498 ~~-h~~~v~--~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~~~~~~~~~~-----  568 (1106)
                      .. ..+...  .-+-..+..|+++++|...|.+.++|..+.+.+..+.... ..|..+.++..|+.++....+..     
T Consensus       145 p~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye  224 (405)
T KOG1273|consen  145 PKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYE  224 (405)
T ss_pred             cCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEe
Confidence            11 111111  1111245667899999999999999999998887776665 67888999988885544333322     


Q ss_pred             ---------------------------eeEEEEcCCCCEEEEEE-CCCeEEEEECCCcceeEEEccCCCCCCcCeEEEcc
Q 001295          569 ---------------------------LGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK  620 (1106)
Q Consensus       569 ---------------------------i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  620 (1106)
                                                 -..++|+.+|.++++++ ....++||....|.+++.+.+..+ .....+.|+|
T Consensus       225 ~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kg-E~l~DV~whp  303 (405)
T KOG1273|consen  225 ISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKG-EELLDVNWHP  303 (405)
T ss_pred             hhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCch-hheeeccccc
Confidence                                       23478999999998876 457899999999999999987653 2466889999


Q ss_pred             CCCEEEEEeCCCcEEEEEccC
Q 001295          621 DGCLLAVSTNDNGIKILATSD  641 (1106)
Q Consensus       621 ~~~~l~~~~~dg~i~iwd~~~  641 (1106)
                      -...+++- ..|.+++|....
T Consensus       304 ~rp~i~si-~sg~v~iw~~~~  323 (405)
T KOG1273|consen  304 VRPIIASI-ASGVVYIWAVVQ  323 (405)
T ss_pred             ceeeeeec-cCCceEEEEeec
Confidence            88888777 669999998754

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=3.7e-20  Score=178.89  Aligned_cols=268  Identities=19%  Similarity=0.388  Sum_probs=191.0

Q ss_pred             ccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCC----ceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEE
Q 001295          454 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG----AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA  529 (1106)
Q Consensus       454 ~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i  529 (1106)
                      .+|.+-|.++.|.+.|+  .+++|+.|++|+|||.++.    .+....+.|.+.|..+.|.+..-|+.+++++.|+++.+
T Consensus        10 s~h~DlihdVs~D~~GR--RmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i   87 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGR--RMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI   87 (361)
T ss_pred             cCCcceeeeeeecccCc--eeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence            47999999999999999  7999999999999996543    45567889999999999998888999999999999999


Q ss_pred             EeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCC
Q 001295          530 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG  609 (1106)
Q Consensus       530 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  609 (1106)
                      |.-.    ...+..++                                             +-|..     ..++.  ..
T Consensus        88 WEE~----~~~~~~~~---------------------------------------------~~Wv~-----~ttl~--Ds  111 (361)
T KOG2445|consen   88 WEEQ----EKSEEAHG---------------------------------------------RRWVR-----RTTLV--DS  111 (361)
T ss_pred             eeec----cccccccc---------------------------------------------ceeEE-----EEEee--cC
Confidence            9532    11111111                                             11211     11121  11


Q ss_pred             CCCcCeEEEcc--CCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhccccccccc
Q 001295          610 LPASPRIRFNK--DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA  687 (1106)
Q Consensus       610 ~~~v~~v~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  687 (1106)
                      ...|+++.|.|  -|-.|++++.||.+|||+..+..                                            
T Consensus       112 rssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~--------------------------------------------  147 (361)
T KOG2445|consen  112 RSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPM--------------------------------------------  147 (361)
T ss_pred             CcceeEEEecchhcceEEEEeccCcEEEEEecCCcc--------------------------------------------
Confidence            33688899999  58899999999999999875541                                            


Q ss_pred             ccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceE
Q 001295          688 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH  767 (1106)
Q Consensus       688 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  767 (1106)
                                                   .+.-|.+..     .+..+..               |-+            
T Consensus       148 -----------------------------nLs~W~Lq~-----Ei~~~~~---------------pp~------------  166 (361)
T KOG2445|consen  148 -----------------------------NLSQWTLQH-----EIQNVID---------------PPG------------  166 (361)
T ss_pred             -----------------------------ccccchhhh-----hhhhccC---------------Ccc------------
Confidence                                         112222221     0000000               000            


Q ss_pred             EEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecC---CCEEEEEeCC------eEEEEEc
Q 001295          768 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN---DSYVMSASGG------KISLFNM  838 (1106)
Q Consensus       768 ~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~---~~~l~~~sdg------~i~vwd~  838 (1106)
                                                              .+.....|+.|+|.   ..+||+|+|.      .+.||..
T Consensus       167 ----------------------------------------~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~  206 (361)
T KOG2445|consen  167 ----------------------------------------KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEY  206 (361)
T ss_pred             ----------------------------------------cccCcceEEeeccccccCceEEEEcccCCccccceEEEEe
Confidence                                                    02333445555442   3467777644      6788876


Q ss_pred             CCC----ceeeeecCCCCCeeEEEEecCCC---ceEEEeeCCCcEEEEEeecc--------------------eEEEEec
Q 001295          839 MTF----KTMATFMPPPPAATFLAFHPQDN---NIIAIGMDDSSIQIYNVRVD--------------------EVKSKLK  891 (1106)
Q Consensus       839 ~~~----~~~~~~~~~~~~v~~l~~s~~d~---~~la~g~~dg~v~iwd~~~~--------------------~~~~~l~  891 (1106)
                      ...    ..+.++.+|..+|+.++|.|.-|   .+||+++.|| |+||.+...                    +.+..+.
T Consensus       207 ~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~  285 (361)
T KOG2445|consen  207 NENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELD  285 (361)
T ss_pred             cCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeecc
Confidence            532    23566789999999999999544   5899999999 999998731                    2456678


Q ss_pred             CcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCC
Q 001295          892 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG  925 (1106)
Q Consensus       892 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~  925 (1106)
                      +|.+.|+.+.|.--|..|+|.|.||.||+|...-
T Consensus       286 ~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany  319 (361)
T KOG2445|consen  286 DHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY  319 (361)
T ss_pred             CCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence            9999999999999999999999999999997554

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.88  E-value=5.8e-21  Score=201.97  Aligned_cols=291  Identities=13%  Similarity=0.115  Sum_probs=205.7

Q ss_pred             CceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeE
Q 001295          755 GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKI  833 (1106)
Q Consensus       755 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i  833 (1106)
                      ...|+.+.++|.|.++|.....+.               ++..++..  .  ..|.+.|..+.|-|....|++++ |.++
T Consensus        64 eHiLavadE~G~i~l~dt~~~~fr---------------~ee~~lk~--~--~aH~nAifDl~wapge~~lVsasGDsT~  124 (720)
T KOG0321|consen   64 EHILAVADEDGGIILFDTKSIVFR---------------LEERQLKK--P--LAHKNAIFDLKWAPGESLLVSASGDSTI  124 (720)
T ss_pred             cceEEEecCCCceeeecchhhhcc---------------hhhhhhcc--c--ccccceeEeeccCCCceeEEEccCCcee
Confidence            345667777899999987643332               11111111  1  23999999999999777888887 8999


Q ss_pred             EEEEcCCCceeee--ecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecce--------------------------
Q 001295          834 SLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE--------------------------  885 (1106)
Q Consensus       834 ~vwd~~~~~~~~~--~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~--------------------------  885 (1106)
                      ++||+++.++...  +.+|...|.+++|.|.+...+++|+.||.|.|||+.-..                          
T Consensus       125 r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~  204 (720)
T KOG0321|consen  125 RPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLK  204 (720)
T ss_pred             eeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhh
Confidence            9999999888877  889999999999999889999999999999999985211                          


Q ss_pred             -EEEEecCcccCeeE---EEEecCCCEEEEEcC-CCcEEEEeCCCcccccc-eeecccCC--CCCCCCCCceEEEcCCCc
Q 001295          886 -VKSKLKGHSKRITG---LAFSHALNVLVSSGA-DSQLCVWSSDGWEKQKN-RFLQIPTG--RTPTAQSDTRVQFHQDQI  957 (1106)
Q Consensus       886 -~~~~l~~h~~~V~~---l~~s~d~~~l~s~s~-Dg~i~vwd~~~~~~~~~-~~~~~~~~--~~~~~~~i~~~~~s~dg~  957 (1106)
                       .+....+|...|.+   +.+..|...||++|. |+.|+|||+........ .......-  +....-.+.++.....|.
T Consensus       205 kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt  284 (720)
T KOG0321|consen  205 KRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT  284 (720)
T ss_pred             ccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC
Confidence             12233456666666   667789999999998 99999999987532211 11111111  111123456666667778


Q ss_pred             EEEE-EeCCeEEEEecCCceEeeecccCCCCC--CeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCC
Q 001295          958 HFLV-VHETQLAIFETTKLECVKQWVPRESSA--PITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAG 1034 (1106)
Q Consensus       958 ~l~~-~~d~~v~i~d~~~~~~~~~~~~~~h~~--~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~ 1034 (1106)
                      +|.+ +.|+.|+.|++.+...-......++..  --..-..+||+.+|++|+.|...++|.+.+-+.--.+.    +  |
T Consensus       285 ~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l----~--G  358 (720)
T KOG0321|consen  285 YLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL----L--G  358 (720)
T ss_pred             eEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh----h--C
Confidence            8877 799999999998765432222223211  11223469999999999999999999998765543322    2  3


Q ss_pred             CCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCC
Q 001295         1035 VSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus      1035 ~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
                      |... |.  .++|.|.+-.-++|+++|-.+++|++..+-
T Consensus       359 ht~e-Vt--~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l  394 (720)
T KOG0321|consen  359 HTRE-VT--TVRWLPSATTPVATCSDDFRVKIWRLSNGL  394 (720)
T ss_pred             cceE-EE--EEeeccccCCCceeeccCcceEEEeccCch
Confidence            3222 44  788888766778999999999999996554

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=2.3e-22  Score=215.40  Aligned_cols=232  Identities=16%  Similarity=0.250  Sum_probs=203.1

Q ss_pred             CCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEE
Q 001295          809 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK  887 (1106)
Q Consensus       809 ~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~  887 (1106)
                      |...+.++..-..++.+++|+ |..+-+|.+.....+..+.+|..+|.++.|++ +..+|+.|+.+|+|++||+..++.+
T Consensus        27 hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~-~E~LlaagsasgtiK~wDleeAk~v  105 (825)
T KOG0267|consen   27 HSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDT-SERLLAAGSASGTIKVWDLEEAKIV  105 (825)
T ss_pred             hhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCc-chhhhcccccCCceeeeehhhhhhh
Confidence            777788888777788899998 78888999988778888999999999999999 8999999999999999999999999


Q ss_pred             EEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCe
Q 001295          888 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQ  966 (1106)
Q Consensus       888 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~  966 (1106)
                      ++|.||...+.+|.|+|-+.+.|+|+.|..+++||++...     +.....+|.   ..+..+.|+|+|++++.+ .|..
T Consensus       106 rtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G-----c~~~~~s~~---~vv~~l~lsP~Gr~v~~g~ed~t  177 (825)
T KOG0267|consen  106 RTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG-----CSHTYKSHT---RVVDVLRLSPDGRWVASGGEDNT  177 (825)
T ss_pred             hhhhccccCcceeeeccceEEeccccccccceehhhhccC-----ceeeecCCc---ceeEEEeecCCCceeeccCCcce
Confidence            9999999999999999999999999999999999998533     445555554   378899999999999995 6699


Q ss_pred             EEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEE
Q 001295          967 LAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIA 1046 (1106)
Q Consensus       967 v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 1046 (1106)
                      ++|||+..|+....|.  .|...|.++.|.|..-+|++|+.|++|++||+++.+.+......   ..+     |.  +..
T Consensus       178 vki~d~~agk~~~ef~--~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~---~~~-----v~--~~~  245 (825)
T KOG0267|consen  178 VKIWDLTAGKLSKEFK--SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE---TDG-----VR--SLA  245 (825)
T ss_pred             eeeecccccccccccc--cccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc---cCC-----ce--eee
Confidence            9999999999999987  78999999999999999999999999999999999988776522   222     44  899


Q ss_pred             EeCCCCCEEEEEeCCC
Q 001295         1047 AHPQEPNEFALGLSDG 1062 (1106)
Q Consensus      1047 ~~~~d~~~l~t~~~Dg 1062 (1106)
                      |.| |+..+.+|..+.
T Consensus       246 fn~-~~~~~~~G~q~s  260 (825)
T KOG0267|consen  246 FNP-DGKIVLSGEQIS  260 (825)
T ss_pred             ecC-CceeeecCchhh
Confidence            999 688888776544

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=2.5e-22  Score=215.15  Aligned_cols=233  Identities=12%  Similarity=0.302  Sum_probs=204.6

Q ss_pred             CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEE
Q 001295          349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  428 (1106)
Q Consensus       349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  428 (1106)
                      |...|.|+..-..++ ++++|+.|..+-+|.+.....+.                   .+.+|+.+|.++.|+++..+|+
T Consensus        27 hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~-------------------S~~~hespIeSl~f~~~E~Lla   86 (825)
T KOG0267|consen   27 HSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAIT-------------------SLTGHESPIESLTFDTSERLLA   86 (825)
T ss_pred             hhhhhceeeeeccce-eeccCCCceeeccccccCCchhh-------------------eeeccCCcceeeecCcchhhhc
Confidence            888999999867777 69999999999999886543332                   2789999999999999999999


Q ss_pred             EEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEe
Q 001295          429 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC  508 (1106)
Q Consensus       429 s~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~  508 (1106)
                      +|+.+|+|++||++.++.++   +|.||...+..+.|+|-+.  ++++|+.|+.+++||++...|.+.+.+|...|.++.
T Consensus        87 agsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~  161 (825)
T KOG0267|consen   87 AGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLR  161 (825)
T ss_pred             ccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcceeEEEe
Confidence            99999999999999988777   7999999999999999999  789999999999999999999999999999999999


Q ss_pred             ccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCC
Q 001295          509 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF  588 (1106)
Q Consensus       509 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  588 (1106)
                      |.  ++|.++++|+.|.++++||...++....|..|...+.++.|.|..                     -.++.|+.|+
T Consensus       162 ls--P~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e---------------------~Lla~Gs~d~  218 (825)
T KOG0267|consen  162 LS--PDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLE---------------------VLLAPGSSDR  218 (825)
T ss_pred             ec--CCCceeeccCCcceeeeecccccccccccccccccccccccCchh---------------------hhhccCCCCc
Confidence            85  556899999999999999999988888888888777766655544                     3678899999


Q ss_pred             eEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCC
Q 001295          589 SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND  631 (1106)
Q Consensus       589 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d  631 (1106)
                      +|++||+++.+.+......  ...|.+.+|+|++..+++|...
T Consensus       219 tv~f~dletfe~I~s~~~~--~~~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  219 TVRFWDLETFEVISSGKPE--TDGVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             eeeeeccceeEEeeccCCc--cCCceeeeecCCceeeecCchh
Confidence            9999999998888777655  5689999999999999988764

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=2.9e-21  Score=208.87  Aligned_cols=273  Identities=16%  Similarity=0.257  Sum_probs=204.2

Q ss_pred             CceeeEecCCCCCCccceecccCccccccceEEEEEcC-CCceEEEeecCceEEEeeccccccCCCCccccccCccccCC
Q 001295          716 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTN-SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQP  794 (1106)
Q Consensus       716 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~  794 (1106)
                      ..++++.+........+..-.-...-..-.+..+.|.. +.++|++++.+|.|.+||+.....                 
T Consensus        60 s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r-----------------  122 (839)
T KOG0269|consen   60 SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIR-----------------  122 (839)
T ss_pred             cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCcccc-----------------
Confidence            45566666654443333321100000112334455553 467889999999999999874211                 


Q ss_pred             CCCCccccccCCCCCCCCeeEEEEecCC-CEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeC
Q 001295          795 PSGIMMTNDVTDSNPEEAVPCFALSKND-SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD  872 (1106)
Q Consensus       795 ~~~~~~~~~~~~~~~~~~v~~l~~s~~~-~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~  872 (1106)
                        ...+. .+.  +|...+.++.|++.. .+|++|+ ||+|++||++..+...++.+....|+.+.|+|..+..++++.+
T Consensus       123 --nk~l~-~f~--EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~d  197 (839)
T KOG0269|consen  123 --NKLLT-VFN--EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHD  197 (839)
T ss_pred             --chhhh-Hhh--hhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecC
Confidence              11111 122  399999999999865 5777888 9999999999999889999888999999999988999999999


Q ss_pred             CCcEEEEEeec-ceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEE
Q 001295          873 DSSIQIYNVRV-DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ  951 (1106)
Q Consensus       873 dg~v~iwd~~~-~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  951 (1106)
                      .|.+++||++. .++...+.+|.++|.++.|+|++.+||+||.|++|+|||+.+.+......++..       ..+..+.
T Consensus       198 sG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTi-------apv~rVk  270 (839)
T KOG0269|consen  198 SGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTI-------APVGRVK  270 (839)
T ss_pred             CceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeec-------ceeeeee
Confidence            99999999986 467788999999999999999999999999999999999998666554444433       4689999


Q ss_pred             EcCCCcEEE-E---EeCCeEEEEecCCceEeeecccCCCCCCeeEEEECC-CCCEEEEEEcCCeEEEEEcCC
Q 001295          952 FHQDQIHFL-V---VHETQLAIFETTKLECVKQWVPRESSAPITHATFSC-DSQLVYACFLDATVCVFSAAN 1018 (1106)
Q Consensus       952 ~s~dg~~l~-~---~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~-d~~~l~t~s~Dg~i~vwd~~~ 1018 (1106)
                      |-|+..+.+ +   ..|..|+|||++..-..... ...|...++.++|.. |...|.+++.||+|..=.+.+
T Consensus       271 WRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t-~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kn  341 (839)
T KOG0269|consen  271 WRPARSYHLATCSMVVDTSVHVWDVRRPYIPYAT-FLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKN  341 (839)
T ss_pred             eccCccchhhhhhccccceEEEEeecccccccee-eeccCccccceeccCCCceeeEeecCccHHHHhhhhc
Confidence            999876554 4   37889999999865443322 237899999999966 566799999999887655443

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.87  E-value=1.9e-20  Score=190.66  Aligned_cols=259  Identities=19%  Similarity=0.289  Sum_probs=195.7

Q ss_pred             CCCCcEEEEEecCCC-eEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc-CCCE
Q 001295          349 QGSSPMSMDFHPVQQ-TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSL  426 (1106)
Q Consensus       349 h~~~v~~~~~sp~g~-~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~  426 (1106)
                      +...|++++|+|... .++|+|...|.|-+||+.+.+......+               .+..|.++|.++.|+| +...
T Consensus       185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~---------------~f~~hs~~Vs~l~F~P~n~s~  249 (498)
T KOG4328|consen  185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVY---------------LFTPHSGPVSGLKFSPANTSQ  249 (498)
T ss_pred             cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceE---------------EeccCCccccceEecCCChhh
Confidence            789999999999876 7899999999999999964433322111               4789999999999999 6778


Q ss_pred             EEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCce-eEEEeccCCCeE
Q 001295          427 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK-QYIFEGHEAPVY  505 (1106)
Q Consensus       427 las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~h~~~v~  505 (1106)
                      +.+.|.||+|++-|++++.. ..+..+......+..+.|+.+..  .++.+..=|...+||.+++.. ...+.-|...|.
T Consensus       250 i~ssSyDGtiR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~  326 (498)
T KOG4328|consen  250 IYSSSYDGTIRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT  326 (498)
T ss_pred             eeeeccCceeeeeeecchhh-HHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence            88999999999999997642 22223433556788899998888  677777777999999997655 666777999999


Q ss_pred             EEeccccCCceEEEEEecCCeEEEEeCCCCCcee----EeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEE
Q 001295          506 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV----DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF  581 (1106)
Q Consensus       506 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l  581 (1106)
                      +++++|-.. .+|+|+|.|++.+|||++......    ....|..                     .|.+..|+|.+..|
T Consensus       327 sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hrr---------------------sV~sAyFSPs~gtl  384 (498)
T KOG4328|consen  327 SVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRR---------------------SVNSAYFSPSGGTL  384 (498)
T ss_pred             eeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccc---------------------eeeeeEEcCCCCce
Confidence            999988765 799999999999999998754432    2223334                     44455555555569


Q ss_pred             EEEECCCeEEEEECC----CcceeEEEccCCCC---CCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhh
Q 001295          582 LAAGDDFSIKFWDMD----SVQLLTSIDADGGL---PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRT  648 (1106)
Q Consensus       582 ~~~~~d~~i~iwd~~----~~~~~~~~~~~~~~---~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  648 (1106)
                      ++.+.|..|+|||..    ...+..++......   -......|.|+..++++|-.-..|-|+|-..+ +.+..
T Consensus       385 ~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~-q~v~e  457 (498)
T KOG4328|consen  385 LTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG-QMVCE  457 (498)
T ss_pred             EeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCC-EEeee
Confidence            999999999999983    33344444322111   12346789999999999999999999998777 43333

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.86  E-value=2.5e-20  Score=184.95  Aligned_cols=270  Identities=15%  Similarity=0.240  Sum_probs=195.2

Q ss_pred             CCcceeeeccCCCCcEEEEEecCC-CeEEEEEeccCcEEEEecCCccee-EEeeeeeeccCcCCccccccccCCCCcCeE
Q 001295          339 LPKTVTRTLNQGSSPMSMDFHPVQ-QTLLLVGTNVGDIGLWEVGSRERL-VLRNFKVWDLGACSMPLQAALVKDPGVSVN  416 (1106)
Q Consensus       339 ~~~~~~~~~~h~~~v~~~~~sp~g-~~llatg~~dg~i~iwd~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~  416 (1106)
                      .|........|.+.|+.+.-++-| ..+.|+=+..|.|.|||+...-.. ..-.+.+-+    ....+...+.+|.+.=+
T Consensus       140 ~P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~----s~~~Pl~t~~ghk~EGy  215 (440)
T KOG0302|consen  140 KPQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD----SEFRPLFTFNGHKGEGY  215 (440)
T ss_pred             cccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc----cccCceEEecccCccce
Confidence            455556667799999999999875 345667777899999998542111 000000001    11112225789999999


Q ss_pred             EEEEcc-CCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCC---c
Q 001295          417 RVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG---A  492 (1106)
Q Consensus       417 ~l~~sp-dg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~  492 (1106)
                      +++||| ....|++|..-+.|++|...+|........+.+|+..|-.++|||..+. +|+|||-||+|+|||++.+   .
T Consensus       216 ~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~  294 (440)
T KOG0302|consen  216 GLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKA  294 (440)
T ss_pred             eeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccc
Confidence            999999 3335778888888999999988765444467789999999999998887 8999999999999999987   3


Q ss_pred             eeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCC---CceeEeeCCCCeeEEEEEecCCCeEEEeeeccce
Q 001295          493 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL---GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL  569 (1106)
Q Consensus       493 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i  569 (1106)
                      ++.+ +.|.+.|+.|.|+...  .+|++|+.||+++|||++..   .++..++.|..+|+++.|+|...           
T Consensus       295 ~~~~-kAh~sDVNVISWnr~~--~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~-----------  360 (440)
T KOG0302|consen  295 AVST-KAHNSDVNVISWNRRE--PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHED-----------  360 (440)
T ss_pred             eeEe-eccCCceeeEEccCCc--ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccC-----------
Confidence            4444 7899999999997554  49999999999999999864   34457777888888887777654           


Q ss_pred             eEEEEcCCCCEEEEEECCCeEEEEECCCcce----------------eEEEccCCCCCCcCeEEEccC-CCEEEEEeCCC
Q 001295          570 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL----------------LTSIDADGGLPASPRIRFNKD-GCLLAVSTNDN  632 (1106)
Q Consensus       570 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----------------~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg  632 (1106)
                               ..|++++.|.+|.+||+....-                -+.+-.|.+...+..+.|+++ ..++++.+.||
T Consensus       361 ---------s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG  431 (440)
T KOG0302|consen  361 ---------SVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG  431 (440)
T ss_pred             ---------ceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc
Confidence                     3588899999999999853221                011222333456788999985 44666666665


Q ss_pred             cEEEE
Q 001295          633 GIKIL  637 (1106)
Q Consensus       633 ~i~iw  637 (1106)
                      . .||
T Consensus       432 f-nVf  435 (440)
T KOG0302|consen  432 F-NVF  435 (440)
T ss_pred             e-eEE
Confidence            4 444

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=1.8e-21  Score=210.46  Aligned_cols=244  Identities=13%  Similarity=0.220  Sum_probs=188.5

Q ss_pred             CcEEEEEecCCCeEEEEEeccCcEEEEecCCc---ceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc-CCCEE
Q 001295          352 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR---ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLF  427 (1106)
Q Consensus       352 ~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~---~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l  427 (1106)
                      .+..|+|+..-..+|||++..|.|.+||+...   +.+                   ..+..|+..|.++.|++ ...+|
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l-------------------~~f~EH~Rs~~~ldfh~tep~il  149 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLL-------------------TVFNEHERSANKLDFHSTEPNIL  149 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCccccchhh-------------------hHhhhhccceeeeeeccCCccEE
Confidence            45677787655558999999999999999762   222                   14789999999999999 67789


Q ss_pred             EEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCC-CceeEEEeccCCCeEE
Q 001295          428 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-GAKQYIFEGHEAPVYS  506 (1106)
Q Consensus       428 as~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~h~~~v~~  506 (1106)
                      ++||.||+|++||++..+-..   ++.+....|..++|+|...+ .|+++.+.|.+.+||++. .++...+..|.++|.+
T Consensus       150 iSGSQDg~vK~~DlR~~~S~~---t~~~nSESiRDV~fsp~~~~-~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c  225 (839)
T KOG0269|consen  150 ISGSQDGTVKCWDLRSKKSKS---TFRSNSESIRDVKFSPGYGN-KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLC  225 (839)
T ss_pred             EecCCCceEEEEeeecccccc---cccccchhhhceeeccCCCc-eEEEecCCceEEEeeccCchhHHHHhhcccCceEE
Confidence            999999999999999876544   57778899999999997666 899999999999999985 4567789999999999


Q ss_pred             EeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeC-CCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEE
Q 001295          507 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA-PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG  585 (1106)
Q Consensus       507 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  585 (1106)
                      +.|+|  ++.+|+|||.|++|+|||+........... ...++..+.|-|+..                    ..|++++
T Consensus       226 ~nwhP--nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~--------------------~hLAtcs  283 (839)
T KOG0269|consen  226 LNWHP--NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARS--------------------YHLATCS  283 (839)
T ss_pred             EeecC--CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCcc--------------------chhhhhh
Confidence            99988  558999999999999999986544332222 223455555555443                    2355543


Q ss_pred             --CCCeEEEEECCCc-ceeEEEccCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEccCC
Q 001295          586 --DDFSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       586 --~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                        .|-.|+|||++.. -+..++..|  ...++.++|.. |...+.+++.||++..-.++++
T Consensus       284 mv~dtsV~VWDvrRPYIP~~t~~eH--~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna  342 (839)
T KOG0269|consen  284 MVVDTSVHVWDVRRPYIPYATFLEH--TDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA  342 (839)
T ss_pred             ccccceEEEEeeccccccceeeecc--CccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence              5889999999754 344555544  55788999976 6677888888888765544444

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.86  E-value=6.8e-20  Score=192.23  Aligned_cols=322  Identities=14%  Similarity=0.294  Sum_probs=231.9

Q ss_pred             EEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCC--EEEEEeCCCcEEEE
Q 001295          560 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC--LLAVSTNDNGIKIL  637 (1106)
Q Consensus       560 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~iw  637 (1106)
                      ++.|| .+.+.++..+|.|.+|++|+.||+|+||.+.+|.+++++...+   .|.|++|+|.+.  .||++..+ .+.|.
T Consensus       395 vyrGH-tg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~---~I~~vaw~P~~~~~vLAvA~~~-~~~iv  469 (733)
T KOG0650|consen  395 VYRGH-TGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS---EIRSVAWNPLSDLCVLAVAVGE-CVLIV  469 (733)
T ss_pred             eEecc-CCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc---eeEEEEecCCCCceeEEEEecC-ceEEe
Confidence            33444 4588899999999999999999999999999999999998765   499999999654  45555544 46666


Q ss_pred             EccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCcccc----cc
Q 001295          638 ATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRIT----EE  713 (1106)
Q Consensus       638 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~  713 (1106)
                      +..-|.+.....   +                                                    ...+.+    ..
T Consensus       470 np~~G~~~e~~~---t----------------------------------------------------~ell~~~~~~~~  494 (733)
T KOG0650|consen  470 NPIFGDRLEVGP---T----------------------------------------------------KELLASAPNESE  494 (733)
T ss_pred             Cccccchhhhcc---h----------------------------------------------------hhhhhcCCCccC
Confidence            654442111100   0                                                    001111    11


Q ss_pred             CCCceeeEecCCCCCCc--cceecccCccccccceEEEEEcCCCceEEEeecC---ceEEEeeccccccCCCCccccccC
Q 001295          714 SNDKSKVWKLTELSEPN--QCRSLRLPENLRATKISRLIFTNSGNAILALASN---AIHLLWKWQRTERNSSGKATASVA  788 (1106)
Q Consensus       714 ~d~~i~vw~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~  788 (1106)
                      -+..+..|.-....+..  .+..+.     |...|..+.|+..|.+|++...+   ..|.|+.+.....           
T Consensus       495 p~~~~~~W~~~~~~e~~~~v~~~I~-----~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s-----------  558 (733)
T KOG0650|consen  495 PDAAVVTWSRASLDELEKGVCIVIK-----HPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS-----------  558 (733)
T ss_pred             CcccceeechhhhhhhccceEEEEe-----cCCccceeeeecCCceEEEeccCCCcceEEEEecccccc-----------
Confidence            23455666654322211  222322     77899999999999999988875   5677776653211           


Q ss_pred             ccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEE
Q 001295          789 PQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIA  868 (1106)
Q Consensus       789 ~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la  868 (1106)
                              .    ..+..  ..+.|.++.|.|...+|+++....|+|||+.....+..+......|..++++| .|.-|+
T Consensus       559 --------Q----~PF~k--skG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~GDnli  623 (733)
T KOG0650|consen  559 --------Q----SPFRK--SKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHP-NGDNLI  623 (733)
T ss_pred             --------c----Cchhh--cCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecC-CCCeEE
Confidence                    1    11211  56778999999999999999999999999999888888887788899999999 888888


Q ss_pred             EeeCCCcEEEEEeec-ceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCC
Q 001295          869 IGMDDSSIQIYNVRV-DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD  947 (1106)
Q Consensus       869 ~g~~dg~v~iwd~~~-~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i  947 (1106)
                      .|+.|+.+..||+.- .+..++++.|...|++|+|++.-.+++||+.||++.|+.-.-...    +++   .        
T Consensus       624 ~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~D----l~q---n--------  688 (733)
T KOG0650|consen  624 LGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYND----LLQ---N--------  688 (733)
T ss_pred             EecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehh----hhc---C--------
Confidence            899999999999975 467888999999999999999999999999999999885221100    000   0        


Q ss_pred             ceEEEcCCCcEEEEEeCCeEEEEecCCceEeeecccCCCC----CCeeEEEECCCCCEEEEEEcCCeEEEE
Q 001295          948 TRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESS----APITHATFSCDSQLVYACFLDATVCVF 1014 (1106)
Q Consensus       948 ~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~~~~~~~~~h~----~~v~~l~~s~d~~~l~t~s~Dg~i~vw 1014 (1106)
                               - |+               -.++.+  .+|.    ..|....|.|..-+|++++.||+|++|
T Consensus       689 ---------p-li---------------VPlK~L--~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  689 ---------P-LI---------------VPLKRL--RGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             ---------C-ce---------------Eeeeec--cCceeecccceEeecccCCCceEEecCCCceEEee
Confidence                     0 00               011111  2443    358999999999999999999999998

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=1.4e-19  Score=175.03  Aligned_cols=259  Identities=14%  Similarity=0.237  Sum_probs=193.6

Q ss_pred             cCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc--CCC
Q 001295          348 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGS  425 (1106)
Q Consensus       348 ~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~  425 (1106)
                      +|.+-|.|+.|.+.|++ +|+++.|++|+|||......--...               .....|.+.|..+.|-+  -|+
T Consensus        11 ~h~DlihdVs~D~~GRR-mAtCSsDq~vkI~d~~~~s~~W~~T---------------s~Wrah~~Si~rV~WAhPEfGq   74 (361)
T KOG2445|consen   11 GHKDLIHDVSFDFYGRR-MATCSSDQTVKIWDSTSDSGTWSCT---------------SSWRAHDGSIWRVVWAHPEFGQ   74 (361)
T ss_pred             CCcceeeeeeecccCce-eeeccCCCcEEEEeccCCCCceEEe---------------eeEEecCCcEEEEEecCccccc
Confidence            48899999999999998 9999999999999975443221110               13678999999999987  699


Q ss_pred             EEEEEeCCCeEEEEEccC------CceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCcee-----
Q 001295          426 LFGVAYSRHIVQIYSYHG------GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ-----  494 (1106)
Q Consensus       426 ~las~~~d~~v~iwd~~~------~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-----  494 (1106)
                      .+|+++.|+++.||.-..      +..-....++......|+++.|.|....+.+++++.||.+|||+.-..--+     
T Consensus        75 vvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~L  154 (361)
T KOG2445|consen   75 VVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTL  154 (361)
T ss_pred             eEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchh
Confidence            999999999999997521      112223446777788999999999887779999999999999987653322     


Q ss_pred             -EEEe-------ccCCCeEEEeccccCC-ceEEEEEecC-----CeEEEEeCCCCCc----eeEeeCCCCeeEEEEEecC
Q 001295          495 -YIFE-------GHEAPVYSVCPHHKEN-IQFIFSTALD-----GKIKAWLYDNLGS----RVDYEAPGRWCTTMAYSAD  556 (1106)
Q Consensus       495 -~~~~-------~h~~~v~~~~~~~~~~-~~~l~s~~~d-----g~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~  556 (1106)
                       ..++       .+..+-.|+.|+++.- ..+|+.|+.+     +.+.||.......    ..++..+..+|+.++|.|+
T Consensus       155 q~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn  234 (361)
T KOG2445|consen  155 QHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN  234 (361)
T ss_pred             hhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc
Confidence             2232       4666778888876532 2467777665     4889998766542    2356778889999999987


Q ss_pred             CCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcc-----------------eeEEEc-cCCCCCCcCeEEE
Q 001295          557 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-----------------LLTSID-ADGGLPASPRIRF  618 (1106)
Q Consensus       557 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----------------~~~~~~-~~~~~~~v~~v~~  618 (1106)
                      --+-+                 ..|++++.|| |+||++....                 .+..+. ..+|...|..+.|
T Consensus       235 ~Gr~y-----------------~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~w  296 (361)
T KOG2445|consen  235 IGRSY-----------------HLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRW  296 (361)
T ss_pred             cCCce-----------------eeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEE
Confidence            54322                 2588899999 9999987311                 112221 2344568999999


Q ss_pred             ccCCCEEEEEeCCCcEEEEEcc
Q 001295          619 NKDGCLLAVSTNDNGIKILATS  640 (1106)
Q Consensus       619 s~~~~~l~~~~~dg~i~iwd~~  640 (1106)
                      +-.|..|++.+.||.+|+|...
T Consensus       297 NmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  297 NMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             eeeeeEEeecCCCceeeehhhh
Confidence            9999999999999999999653

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=3.2e-20  Score=188.51  Aligned_cols=260  Identities=12%  Similarity=0.158  Sum_probs=189.5

Q ss_pred             CCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccC---cCCccccccccCCCCcCeEEEEEccC-CCEEEEEeCCCeEE
Q 001295          362 QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLG---ACSMPLQAALVKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQ  437 (1106)
Q Consensus       362 g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~---~~~~~~~~~~~~~h~~~V~~l~~spd-g~~las~~~d~~v~  437 (1106)
                      |. ++|.|+.|..|.|||+.--..+.- .+.+-...   ............+|+..|.+++|+.+ ...||+||.|.+|+
T Consensus       192 gN-yvAiGtmdp~IeIWDLDI~d~v~P-~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~  269 (463)
T KOG0270|consen  192 GN-YVAIGTMDPEIEIWDLDIVDAVLP-CVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVK  269 (463)
T ss_pred             cc-eEEEeccCceeEEecccccccccc-ceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEE
Confidence            56 499999999999999864221110 00000000   00000112235689999999999984 56789999999999


Q ss_pred             EEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCcee-EEEeccCCCeEEEeccccCCce
Q 001295          438 IYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ-YIFEGHEAPVYSVCPHHKENIQ  516 (1106)
Q Consensus       438 iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~  516 (1106)
                      +||+.+|++..   ++..|.+.|.++.|.|.... +|++|+.|++|.+.|.+..... ..++ ..+.|..++|.+... .
T Consensus       270 lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se-~  343 (463)
T KOG0270|consen  270 LWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSE-N  343 (463)
T ss_pred             EEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCc-e
Confidence            99999998766   57789999999999998877 8999999999999999853332 2222 457899999987655 6


Q ss_pred             EEEEEecCCeEEEEeCCCC-CceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEEC
Q 001295          517 FIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM  595 (1106)
Q Consensus       517 ~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~  595 (1106)
                      .++++..||+|+-+|++.. +++.++..|...|.+++++..-.                    +.+++++.|+.|++|++
T Consensus       344 ~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p--------------------~~l~t~s~d~~Vklw~~  403 (463)
T KOG0270|consen  344 SFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTP--------------------GLLSTASTDKVVKLWKF  403 (463)
T ss_pred             eEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCC--------------------cceeeccccceEEEEee
Confidence            7888999999999999987 67778999999999998877654                    35888999999999998


Q ss_pred             CCcceeEEEccCCCCCCcCeEEEccCC-CEEEEEeCCCcEEEEEccCCchhhhhh
Q 001295          596 DSVQLLTSIDADGGLPASPRIRFNKDG-CLLAVSTNDNGIKILATSDGIRLLRTF  649 (1106)
Q Consensus       596 ~~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~  649 (1106)
                      ............-..+...|.++.|+- -.++.|+..+.++|||+.+.....+.|
T Consensus       404 ~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~kaF  458 (463)
T KOG0270|consen  404 DVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRKAF  458 (463)
T ss_pred             cCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHHHhh
Confidence            754442222211112345677777754 467778888889999998874444433

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.85  E-value=2.2e-17  Score=192.53  Aligned_cols=371  Identities=25%  Similarity=0.416  Sum_probs=270.1

Q ss_pred             eeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcc-eeEEeeeeeeccCcCCccccccccCCCC-cCeEEEEE-c
Q 001295          345 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE-RLVLRNFKVWDLGACSMPLQAALVKDPG-VSVNRVIW-S  421 (1106)
Q Consensus       345 ~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~h~-~~V~~l~~-s  421 (1106)
                      ....|...|.++.|.+.+.. ++.++.|+.+.+|+...+. ....                   +.++. ..+..+.+ +
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~  119 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGEL-LLSGSSDGTIKLWDLDNGEKLIKS-------------------LEGLHDSSVSKLALSS  119 (466)
T ss_pred             eeeeccceEEEEEECCCCcE-EEEecCCCcEEEEEcCCCceeEEE-------------------EeccCCCceeeEEEEC
Confidence            34559999999999999995 8888889999999998876 3221                   23322 46777777 8


Q ss_pred             cCCC-EEEEEeC-CCeEEEEEccC-CceeeeeeeeccccCCeeEEEEcCCCCceEEEEecC-CCcEEEEeCCCCceeEEE
Q 001295          422 PDGS-LFGVAYS-RHIVQIYSYHG-GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIF  497 (1106)
Q Consensus       422 pdg~-~las~~~-d~~v~iwd~~~-~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~  497 (1106)
                      +++. +++..+. |+.+.+|+... .....   .+..|...|..++|+|++.  .+++++. |+.+++|++..+..+..+
T Consensus       120 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (466)
T COG2319         120 PDGNSILLASSSLDGTVKLWDLSTPGKLIR---TLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTL  194 (466)
T ss_pred             CCcceEEeccCCCCccEEEEEecCCCeEEE---EEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEee
Confidence            8888 5555444 89999999987 44333   5778999999999999999  6788875 999999999999999999


Q ss_pred             eccCCCeEEEeccccCCce-EEEEEecCCeEEEEeCCCCCcee-EeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEc
Q 001295          498 EGHEAPVYSVCPHHKENIQ-FIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD  575 (1106)
Q Consensus       498 ~~h~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~  575 (1106)
                      .+|...|.++.|.  +++. .+++++.|+.|++||........ .+..+.... ..                     .|+
T Consensus       195 ~~~~~~v~~~~~~--~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~---------------------~~~  250 (466)
T COG2319         195 AGHTDPVSSLAFS--PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VS---------------------SFS  250 (466)
T ss_pred             ccCCCceEEEEEc--CCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eE---------------------eEC
Confidence            9999999999997  4444 55566999999999877444443 234333322 11                     455


Q ss_pred             CCCCEEEEEECCCeEEEEECCCcce-eEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhccccc
Q 001295          576 TTKNRFLAAGDDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY  654 (1106)
Q Consensus       576 ~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  654 (1106)
                      +++..+++++.|+.+++|+...... +..+..+  ...+.++.|+|++..+++++.|+.+.+|+..+... .....    
T Consensus       251 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~----  323 (466)
T COG2319         251 PDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH--SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL-LSSLT----  323 (466)
T ss_pred             CCCCEEEEecCCCcEEEeeecCCCcEEEEEecC--CccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCce-EEEee----
Confidence            5555788999999999999987665 4444333  55789999999888888899898899997655410 00000    


Q ss_pred             ccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCcccee
Q 001295          655 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS  734 (1106)
Q Consensus       655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~  734 (1106)
                                                                                                      
T Consensus       324 --------------------------------------------------------------------------------  323 (466)
T COG2319         324 --------------------------------------------------------------------------------  323 (466)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCee
Q 001295          735 LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP  814 (1106)
Q Consensus       735 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~  814 (1106)
                          ..                                                                   .|...+.
T Consensus       324 ----~~-------------------------------------------------------------------~~~~~~~  332 (466)
T COG2319         324 ----LK-------------------------------------------------------------------GHEGPVS  332 (466)
T ss_pred             ----ec-------------------------------------------------------------------ccCCceE
Confidence                00                                                                   0222344


Q ss_pred             EEEEecCCCEEEEE-e-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEE-eeCCCcEEEEEeecceEEEEec
Q 001295          815 CFALSKNDSYVMSA-S-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAI-GMDDSSIQIYNVRVDEVKSKLK  891 (1106)
Q Consensus       815 ~l~~s~~~~~l~~~-s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~-g~~dg~v~iwd~~~~~~~~~l~  891 (1106)
                      .+.+.+++..++.+ . |+.+.+|+.............. .+..+.+++ + ..++. +..++.+.+|+...........
T Consensus       333 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (466)
T COG2319         333 SLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLD  409 (466)
T ss_pred             EEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCc-eEEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeecc
Confidence            45552222344444 3 6677778877665222222222 288899988 6 55554 8899999999999888777776


Q ss_pred             CcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCC
Q 001295          892 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG  925 (1106)
Q Consensus       892 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~  925 (1106)
                      .+...+....+++++..+++++.++++++|+..+
T Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         410 GHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             CCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence            5547899999999999999999999999999877

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.85  E-value=1.2e-19  Score=177.03  Aligned_cols=299  Identities=15%  Similarity=0.197  Sum_probs=204.3

Q ss_pred             ccccceEEEEEcC----CCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEE
Q 001295          741 LRATKISRLIFTN----SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF  816 (1106)
Q Consensus       741 ~~~~~i~~~~~s~----~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l  816 (1106)
                      .|...|..++|.+    +...+++......+.+|+.....           .+        +.+.. .....+......+
T Consensus        36 d~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~-----------~i--------r~lq~-y~D~d~~Esfytc   95 (385)
T KOG1034|consen   36 DHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDG-----------GI--------RLLQS-YADEDHDESFYTC   95 (385)
T ss_pred             cCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCcc-----------ce--------eeeee-ccCCCCCcceEEE
Confidence            4677888999874    33334444444567777654211           00        11111 1112366667777


Q ss_pred             EEecC----CCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEe-
Q 001295          817 ALSKN----DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-  890 (1106)
Q Consensus       817 ~~s~~----~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l-  890 (1106)
                      +|+-|    ..++|+|+ -|.|+|.|..++++...+.+|...|..+.|.|++.+++++++.|.+|++|++++..++..+ 
T Consensus        96 sw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG  175 (385)
T KOG1034|consen   96 SWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG  175 (385)
T ss_pred             EEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec
Confidence            77654    33677776 7999999999999999999999999999999988899999999999999999999999887 


Q ss_pred             --cCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCccccccee-------------ecccCCCCC-------CCCCCc
Q 001295          891 --KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRF-------------LQIPTGRTP-------TAQSDT  948 (1106)
Q Consensus       891 --~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~-------------~~~~~~~~~-------~~~~i~  948 (1106)
                        .||.+.|.++.|+++|.+|+|+|.|.+|++|++...+......             ......+.+       ....|-
T Consensus       176 G~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVD  255 (385)
T KOG1034|consen  176 GVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVD  255 (385)
T ss_pred             ccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHH
Confidence              5699999999999999999999999999999998532211000             000000100       001122


Q ss_pred             eEEEcCCCcEEEE-EeCCeEEEEecC-CceEe-------------eecccCCCCCCeeEE--EECCCCCEEEEEEcCCeE
Q 001295          949 RVQFHQDQIHFLV-VHETQLAIFETT-KLECV-------------KQWVPRESSAPITHA--TFSCDSQLVYACFLDATV 1011 (1106)
Q Consensus       949 ~~~~s~dg~~l~~-~~d~~v~i~d~~-~~~~~-------------~~~~~~~h~~~v~~l--~~s~d~~~l~t~s~Dg~i 1011 (1106)
                      ++.|  -|.++++ +.++.|..|..- -.+.+             ..+..  ....|+-|  +|.|-+++||.|...|.|
T Consensus       256 Cvrw--~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~--~~c~iWfirf~~d~~~~~la~gnq~g~v  331 (385)
T KOG1034|consen  256 CVRW--FGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDY--PMCDIWFIRFAFDPWQKMLALGNQSGKV  331 (385)
T ss_pred             HHHH--HhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEecc--CccceEEEEEeecHHHHHHhhccCCCcE
Confidence            2222  1567777 788899999872 22221             11211  13344444  556778899999999999


Q ss_pred             EEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeec
Q 001295         1012 CVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1070 (1106)
Q Consensus      1012 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~ 1070 (1106)
                      ++||+...+....-    .+.+...+..|.  ..+|+. |+.+|+..++|++|.-||..
T Consensus       332 ~vwdL~~~ep~~~t----tl~~s~~~~tVR--Q~sfS~-dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  332 YVWDLDNNEPPKCT----TLTHSKSGSTVR--QTSFSR-DGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             EEEECCCCCCccCc----eEEeccccceee--eeeecc-cCcEEEEEeCCCcEEEEEee
Confidence            99999887764211    122222233355  788888 79999999999999999864

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.84  E-value=4.2e-19  Score=178.38  Aligned_cols=171  Identities=20%  Similarity=0.241  Sum_probs=139.9

Q ss_pred             CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEE
Q 001295          349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  428 (1106)
Q Consensus       349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  428 (1106)
                      ...+|..+.|.+++...+|||+.|..|+||-++.++.-..          .....-...|..|...|+++.|+|+|++||
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~----------~~~V~y~s~Ls~H~~aVN~vRf~p~gelLA   81 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG----------DMKVEYLSSLSRHTRAVNVVRFSPDGELLA   81 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCC----------ceeEEEeecccCCcceeEEEEEcCCcCeee
Confidence            3578999999998875699999999999999876543220          000111225899999999999999999999


Q ss_pred             EEeCCCeEEEEEcc--------C-----CceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeE
Q 001295          429 VAYSRHIVQIYSYH--------G-----GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY  495 (1106)
Q Consensus       429 s~~~d~~v~iwd~~--------~-----~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~  495 (1106)
                      +|+.+|.|.+|...        +     .+.......+.+|...|..++|+||+.  ++++++.|.++++||+..|+.+.
T Consensus        82 Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G~l~~  159 (434)
T KOG1009|consen   82 SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAGQLLA  159 (434)
T ss_pred             ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccceeEe
Confidence            99999999999876        3     121223456789999999999999999  89999999999999999999999


Q ss_pred             EEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCC
Q 001295          496 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD  533 (1106)
Q Consensus       496 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  533 (1106)
                      .+.+|...|..++|.+-.  +++++-+.|...+.+.+.
T Consensus       160 ~~~dh~~yvqgvawDpl~--qyv~s~s~dr~~~~~~~~  195 (434)
T KOG1009|consen  160 ILDDHEHYVQGVAWDPLN--QYVASKSSDRHPEGFSAK  195 (434)
T ss_pred             eccccccccceeecchhh--hhhhhhccCcccceeeee
Confidence            999999999999996654  789999988866666544

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.84  E-value=4.8e-19  Score=180.48  Aligned_cols=317  Identities=13%  Similarity=0.149  Sum_probs=225.0

Q ss_pred             eCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCC----ceeEeeCCCCeeEEEEEecCCCeEEE
Q 001295          487 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG----SRVDYEAPGRWCTTMAYSADGTRTYQ  562 (1106)
Q Consensus       487 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~~~~~~~  562 (1106)
                      |+.+-......+-+.++|++++|+|..+.+++++|..-|.|-+||+.+.+    ....+..|..+|.++.|+|...    
T Consensus       172 ~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~----  247 (498)
T KOG4328|consen  172 DLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANT----  247 (498)
T ss_pred             ccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCCh----
Confidence            33344445566668899999999999998899999999999999996433    3345666777777777777654    


Q ss_pred             eeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295          563 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       563 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                                      ..+++.+.||+|++-|+..+.....+........+.++.|+.+...++.+..=|.+.+||.+++
T Consensus       248 ----------------s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~  311 (498)
T KOG4328|consen  248 ----------------SQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTD  311 (498)
T ss_pred             ----------------hheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecC
Confidence                            4689999999999999987654444443223345677888888888888888889999999988


Q ss_pred             chhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEe
Q 001295          643 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK  722 (1106)
Q Consensus       643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~  722 (1106)
                      ...+..++-|...+...      ++.|..                                  ...+++++.|++.++||
T Consensus       312 ~s~~~~~~lh~kKI~sv------~~NP~~----------------------------------p~~laT~s~D~T~kIWD  351 (498)
T KOG4328|consen  312 GSEYENLRLHKKKITSV------ALNPVC----------------------------------PWFLATASLDQTAKIWD  351 (498)
T ss_pred             Cccchhhhhhhccccee------ecCCCC----------------------------------chheeecccCcceeeee
Confidence            66666666666543322      333332                                  56789999999999999


Q ss_pred             cCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCcccc
Q 001295          723 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN  802 (1106)
Q Consensus       723 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  802 (1106)
                      +......... .+.  ...|...|.+..|||.+-.|++.+.|..|+|||..-              +.-|+...+.....
T Consensus       352 ~R~l~~K~sp-~ls--t~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~--------------~sa~~~p~~~I~Hn  414 (498)
T KOG4328|consen  352 LRQLRGKASP-FLS--TLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSC--------------ISAKDEPLGTIPHN  414 (498)
T ss_pred             hhhhcCCCCc-cee--cccccceeeeeEEcCCCCceEeeccCCceEEeeccc--------------ccccCCccceeecc
Confidence            9876654431 111  134899999999999988899999999999998631              11122222222111


Q ss_pred             ccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCC-CeeE-EEEecCCCceEEEeeCCCcEEEE
Q 001295          803 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPP-AATF-LAFHPQDNNIIAIGMDDSSIQIY  879 (1106)
Q Consensus       803 ~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~-~v~~-l~~s~~d~~~la~g~~dg~v~iw  879 (1106)
                      ...+  .--...-.+|.|+..++++|. -..|-|+|-..++.+..+..... .|.+ ..|+|-+..++|-|+..|.|+||
T Consensus       415 ~~t~--RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vf  492 (498)
T KOG4328|consen  415 NRTG--RWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVF  492 (498)
T ss_pred             Cccc--ccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEE
Confidence            1000  001123468999999999998 67899999999887777654433 4444 57999444466767778899988


Q ss_pred             Eee
Q 001295          880 NVR  882 (1106)
Q Consensus       880 d~~  882 (1106)
                      --+
T Consensus       493 t~k  495 (498)
T KOG4328|consen  493 TNK  495 (498)
T ss_pred             ecC
Confidence            644

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.84  E-value=2.7e-19  Score=183.28  Aligned_cols=216  Identities=17%  Similarity=0.266  Sum_probs=170.1

Q ss_pred             EEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEE
Q 001295          748 RLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMS  827 (1106)
Q Consensus       748 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~  827 (1106)
                      |++......++++++..++|+|||++.                       +++...+++  |...|+++.++-...+||+
T Consensus        84 Cv~~~s~S~y~~sgG~~~~Vkiwdl~~-----------------------kl~hr~lkd--h~stvt~v~YN~~DeyiAs  138 (673)
T KOG4378|consen   84 CVACASQSLYEISGGQSGCVKIWDLRA-----------------------KLIHRFLKD--HQSTVTYVDYNNTDEYIAS  138 (673)
T ss_pred             HHhhhhcceeeeccCcCceeeehhhHH-----------------------HHHhhhccC--CcceeEEEEecCCcceeEE
Confidence            333344457899999999999998752                       223333555  8999999999999999999


Q ss_pred             Ee-CCeEEEEEcCCCceeeeecCC-CCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEe-cCcccCeeEEEEec
Q 001295          828 AS-GGKISLFNMMTFKTMATFMPP-PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-KGHSKRITGLAFSH  904 (1106)
Q Consensus       828 ~s-dg~i~vwd~~~~~~~~~~~~~-~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l-~~h~~~V~~l~~s~  904 (1106)
                      ++ .|.|.|..+.++....+|... ...|.-+.|+|-...+|.+++.+|.|.+||+.....+..+ ..|+.+...++|+|
T Consensus       139 vs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfsp  218 (673)
T KOG4378|consen  139 VSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSP  218 (673)
T ss_pred             eccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecC
Confidence            99 688999999998887777654 3456689999955677889999999999999987766554 56999999999999


Q ss_pred             CC-CEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeEEEEecCCceE-eeec
Q 001295          905 AL-NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC-VKQW  981 (1106)
Q Consensus       905 d~-~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v~i~d~~~~~~-~~~~  981 (1106)
                      .. .+||+.|.|..|.+||+...+...  ++  ...     .+...++|+++|.+|++| ..|.|..||++..+. +...
T Consensus       219 sne~l~vsVG~Dkki~~yD~~s~~s~~--~l--~y~-----~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~  289 (673)
T KOG4378|consen  219 SNEALLVSVGYDKKINIYDIRSQASTD--RL--TYS-----HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVR  289 (673)
T ss_pred             CccceEEEecccceEEEeecccccccc--ee--eec-----CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEe
Confidence            65 678899999999999998633211  11  112     256899999999999996 889999999987653 4444


Q ss_pred             ccCCCCCCeeEEEECCCC
Q 001295          982 VPRESSAPITHATFSCDS  999 (1106)
Q Consensus       982 ~~~~h~~~v~~l~~s~d~  999 (1106)
                      .  .|...|++++|-|..
T Consensus       290 s--ah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  290 S--AHDASVTRVAFQPSP  305 (673)
T ss_pred             e--ecccceeEEEeeecc
Confidence            3  788999999997764

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.83  E-value=1.2e-16  Score=186.32  Aligned_cols=368  Identities=23%  Similarity=0.398  Sum_probs=271.5

Q ss_pred             eccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCc-eeEEEeccCC-CeEEEeccccCCce-EEEEEec-CCeEE
Q 001295          453 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFEGHEA-PVYSVCPHHKENIQ-FIFSTAL-DGKIK  528 (1106)
Q Consensus       453 l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~h~~-~v~~~~~~~~~~~~-~l~s~~~-dg~i~  528 (1106)
                      +..|...+..+.|.+.+.  .++.++.|+.+.+|+...+. .+..+.++.. .+..+.+. ..++. .++..+. |+.+.
T Consensus        61 ~~~~~~~i~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~  137 (466)
T COG2319          61 LRGHEDSITSIAFSPDGE--LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTVK  137 (466)
T ss_pred             eeeccceEEEEEECCCCc--EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccEE
Confidence            567999999999999999  78888899999999998887 6777776443 77777764 44444 5555444 99999


Q ss_pred             EEeCCC-CCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEEC-CCeEEEEECCCcceeEEEcc
Q 001295          529 AWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD-DFSIKFWDMDSVQLLTSIDA  606 (1106)
Q Consensus       529 iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~  606 (1106)
                      +|+... ......+..+...+..++|++++.                     .+++++. |+.+++|+...+..+..+..
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (466)
T COG2319         138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGK---------------------LLASGSSLDGTIKLWDLRTGKPLSTLAG  196 (466)
T ss_pred             EEEecCCCeEEEEEecCcccEEEEEECCCCC---------------------EEEecCCCCCceEEEEcCCCceEEeecc
Confidence            999987 566666777777777777666665                     5777775 99999999999888888876


Q ss_pred             CCCCCCcCeEEEccCCC-EEEEEeCCCcEEEEEccCCchhhh-hhcccccccccCCCCCCCCcCchhhhHhhhhcccccc
Q 001295          607 DGGLPASPRIRFNKDGC-LLAVSTNDNGIKILATSDGIRLLR-TFENLAYDASRTSENSKPTISPISAAAAAAATSAGLA  684 (1106)
Q Consensus       607 ~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  684 (1106)
                      +  ...+.+++|+|++. ++++++.|+.+++||...+ .... .+.                                  
T Consensus       197 ~--~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~-~~~~~~~~----------------------------------  239 (466)
T COG2319         197 H--TDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG-KLLRSTLS----------------------------------  239 (466)
T ss_pred             C--CCceEEEEEcCCcceEEEEecCCCcEEEEECCCC-cEEeeecC----------------------------------
Confidence            4  45799999999998 5555589999999965432 1000 000                                  


Q ss_pred             cccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecC
Q 001295          685 DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN  764 (1106)
Q Consensus       685 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  764 (1106)
                                                                                                      
T Consensus       240 --------------------------------------------------------------------------------  239 (466)
T COG2319         240 --------------------------------------------------------------------------------  239 (466)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCce
Q 001295          765 AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT  843 (1106)
Q Consensus       765 g~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~  843 (1106)
                                                                 .|.... ...|++++.++++++ |+.+++|++.....
T Consensus       240 -------------------------------------------~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  275 (466)
T COG2319         240 -------------------------------------------GHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS  275 (466)
T ss_pred             -------------------------------------------CCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc
Confidence                                                       022222 115666665666555 67777777765543


Q ss_pred             -eeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEec--CcccCeeEEEEecCCCEEEEE-cCCCcEE
Q 001295          844 -MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK--GHSKRITGLAFSHALNVLVSS-GADSQLC  919 (1106)
Q Consensus       844 -~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~--~h~~~V~~l~~s~d~~~l~s~-s~Dg~i~  919 (1106)
                       ...+..|...+.++.|+| ++..+++++.|+.+.+|+..+........  .|...+..+.|.+++..++.+ ..|+.+.
T Consensus       276 ~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  354 (466)
T COG2319         276 LLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIR  354 (466)
T ss_pred             EEEEEecCCccEEEEEECC-CCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEE
Confidence             334456788999999999 77778779999999999998887766665  888889999994333566655 6889999


Q ss_pred             EEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE--EeCCeEEEEecCCceEeeecccCCCCCCeeEEEECC
Q 001295          920 VWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHETQLAIFETTKLECVKQWVPRESSAPITHATFSC  997 (1106)
Q Consensus       920 vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~--~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~  997 (1106)
                      +|++....  .   .......    ..+..+.+++ ...+..  ..++.+.+|+............  +...+....+++
T Consensus       355 ~~~~~~~~--~---~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  422 (466)
T COG2319         355 LWDLRTGK--P---LKTLEGH----SNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDG--HTSRVTSLDFSP  422 (466)
T ss_pred             eeecCCCc--e---eEEecCC----ceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccC--CCCcEEEEEECC
Confidence            99998854  1   1111111    1267888888 543443  4788999999999888777652  127999999999


Q ss_pred             CCCEEEEEEcCCeEEEEEcCC
Q 001295          998 DSQLVYACFLDATVCVFSAAN 1018 (1106)
Q Consensus       998 d~~~l~t~s~Dg~i~vwd~~~ 1018 (1106)
                      ++.++++++.++++++|+..+
T Consensus       423 ~~~~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         423 DGKSLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             CCcEEEEecCCCcEEEEeccC
Confidence            999999999999999999988

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.83  E-value=2.2e-19  Score=175.11  Aligned_cols=258  Identities=19%  Similarity=0.279  Sum_probs=193.8

Q ss_pred             CCCCcEEEEEecC---CCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccC-C
Q 001295          349 QGSSPMSMDFHPV---QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD-G  424 (1106)
Q Consensus       349 h~~~v~~~~~sp~---g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd-g  424 (1106)
                      |...-..++|+-|   |.-++|.|+.-|.|+|.|+.+++....                   +.+|.+.|+.+.|.|+ .
T Consensus        88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~-------------------~~ghG~sINeik~~p~~~  148 (385)
T KOG1034|consen   88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKN-------------------YRGHGGSINEIKFHPDRP  148 (385)
T ss_pred             CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccc-------------------eeccCccchhhhcCCCCC
Confidence            5667778888754   444788888899999999999887763                   7899999999999994 5


Q ss_pred             CEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCcee----------
Q 001295          425 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ----------  494 (1106)
Q Consensus       425 ~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~----------  494 (1106)
                      ++++++|.|.+|++|++.+..++..+.-+.||.+.|.++.|+++|.  +++|+|.|.++++|++...+..          
T Consensus       149 qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd--~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~  226 (385)
T KOG1034|consen  149 QLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGD--RIASCGMDHSLKLWRLNVKEFKNKLELSITYS  226 (385)
T ss_pred             cEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCC--eeeccCCcceEEEEecChhHHhhhhhhhcccC
Confidence            7999999999999999999999988888889999999999999999  8999999999999999732110          


Q ss_pred             -----------------E-EEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCC-CceeEeeCCCCeeEEE-EEe
Q 001295          495 -----------------Y-IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTM-AYS  554 (1106)
Q Consensus       495 -----------------~-~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~-~~s  554 (1106)
                                       . +-.-|...|-|+.|..    +++++-+-++.|.+|..-.. +............+-+ .|.
T Consensus       227 ~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g----d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~  302 (385)
T KOG1034|consen  227 PNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG----DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFD  302 (385)
T ss_pred             CCCccCcCCccccccccccccccccchHHHHHHHh----hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEec
Confidence                             0 1234777777887743    58999999999999976321 1111111111111100 000


Q ss_pred             cCCCeEEEeeeccceeE--EEEcCCCCEEEEEECCCeEEEEECCCcce--eEEEccCCCCCCcCeEEEccCCCEEEEEeC
Q 001295          555 ADGTRTYQGFRKRSLGV--VQFDTTKNRFLAAGDDFSIKFWDMDSVQL--LTSIDADGGLPASPRIRFNKDGCLLAVSTN  630 (1106)
Q Consensus       555 ~~~~~~~~~~~~~~i~~--~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  630 (1106)
                               .....++-  .+++|-+..|+.|...|.|++||++...+  ..++........|...+|+.||.+|+...+
T Consensus       303 ---------~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcd  373 (385)
T KOG1034|consen  303 ---------YPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCD  373 (385)
T ss_pred             ---------cCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeC
Confidence                     01113333  35566778899999999999999987665  233433444567899999999999999999


Q ss_pred             CCcEEEEEcc
Q 001295          631 DNGIKILATS  640 (1106)
Q Consensus       631 dg~i~iwd~~  640 (1106)
                      |++|.-||..
T Consensus       374 d~~Vwrwdrv  383 (385)
T KOG1034|consen  374 DGTVWRWDRV  383 (385)
T ss_pred             CCcEEEEEee
Confidence            9999999864

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.82  E-value=3.3e-19  Score=177.02  Aligned_cols=171  Identities=26%  Similarity=0.415  Sum_probs=143.7

Q ss_pred             ceeeecc-CCCCcEEEEEec--CCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEE
Q 001295          342 TVTRTLN-QGSSPMSMDFHP--VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV  418 (1106)
Q Consensus       342 ~~~~~~~-h~~~v~~~~~sp--~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l  418 (1106)
                      +.+.++. |+.+=.+++|||  .|+  |++|..-+.|++|...+|.=...                ...+.+|+..|-.+
T Consensus       202 ~Pl~t~~ghk~EGy~LdWSp~~~g~--LlsGDc~~~I~lw~~~~g~W~vd----------------~~Pf~gH~~SVEDL  263 (440)
T KOG0302|consen  202 RPLFTFNGHKGEGYGLDWSPIKTGR--LLSGDCVKGIHLWEPSTGSWKVD----------------QRPFTGHTKSVEDL  263 (440)
T ss_pred             CceEEecccCccceeeecccccccc--cccCccccceEeeeeccCceeec----------------Cccccccccchhhh
Confidence            3444444 999999999999  454  78888889999999988643221                11367899999999


Q ss_pred             EEcc-CCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCC---Ccee
Q 001295          419 IWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN---GAKQ  494 (1106)
Q Consensus       419 ~~sp-dg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~---~~~~  494 (1106)
                      +||| ....||+||.||+|+|||++.+.....+. .++|.+.|+.|.|+.+-.  +|++|++||+++|||++.   ++++
T Consensus       264 qWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDVNVISWnr~~~--lLasG~DdGt~~iwDLR~~~~~~pV  340 (440)
T KOG0302|consen  264 QWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDVNVISWNRREP--LLASGGDDGTLSIWDLRQFKSGQPV  340 (440)
T ss_pred             ccCCccCceEEeeecCceEEEEEecCCCccceeE-eeccCCceeeEEccCCcc--eeeecCCCceEEEEEhhhccCCCcc
Confidence            9999 56689999999999999999985444333 489999999999998888  899999999999999984   6788


Q ss_pred             EEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCC
Q 001295          495 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN  534 (1106)
Q Consensus       495 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  534 (1106)
                      ..|+-|..+|+++.|+|..+ ..|++++.|..|.+||+..
T Consensus       341 A~fk~Hk~pItsieW~p~e~-s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  341 ATFKYHKAPITSIEWHPHED-SVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             eeEEeccCCeeEEEeccccC-ceEEeccCCCcEEEEEeec
Confidence            99999999999999998876 5788899999999999864

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.82  E-value=1.5e-18  Score=177.87  Aligned_cols=292  Identities=12%  Similarity=0.183  Sum_probs=213.2

Q ss_pred             cccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceE-EEeecCceEEEeeccccccCCCCcccccc
Q 001295          709 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAI-LALASNAIHLLWKWQRTERNSSGKATASV  787 (1106)
Q Consensus       709 l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~  787 (1106)
                      +..++....+++||+........+...+     ....+.++.|......+ +..+.|..+++|.-...            
T Consensus         5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t-----~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~------------   67 (673)
T KOG4378|consen    5 LHVASTGDKTKLSDFSDLETKSEYVHQT-----AEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK------------   67 (673)
T ss_pred             eeeeccCCceEEeecccccCccccccCC-----CCCcceeeeccccceEEEeecCCceeEEEecccCC------------
Confidence            4445555789999998876655554433     23348888888776532 33445788888864321            


Q ss_pred             CccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCce
Q 001295          788 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI  866 (1106)
Q Consensus       788 ~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~  866 (1106)
                              ++.+......   ....-.|++......++++|+ .++|+|||++...+.+.+.+|...|+++.+.- ...+
T Consensus        68 --------~~~Vp~~~k~---~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~-~Dey  135 (673)
T KOG4378|consen   68 --------TPEVPRVRKL---TGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN-TDEY  135 (673)
T ss_pred             --------CCccceeecc---ccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC-Ccce
Confidence                    1111111111   122445666666668999998 89999999998778888999999999999998 7789


Q ss_pred             EEEeeCCCcEEEEEeecceEEEEecCcc-cCeeEEEEecCCCE-EEEEcCCCcEEEEeCCCcccccceeecccCCCCCCC
Q 001295          867 IAIGMDDSSIQIYNVRVDEVKSKLKGHS-KRITGLAFSHALNV-LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA  944 (1106)
Q Consensus       867 la~g~~dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~~s~d~~~-l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  944 (1106)
                      ||+++..|.|.|..+.++.....|...+ ..|.-|.|++..+. |.+++.+|.|.+||+.....    .....+.|..  
T Consensus       136 iAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp----~~~~~~~HsA--  209 (673)
T KOG4378|consen  136 IASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP----IFHASEAHSA--  209 (673)
T ss_pred             eEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc----ccchhhhccC--
Confidence            9999999999999999988777776543 45568999998764 66889999999999987432    3334444443  


Q ss_pred             CCCceEEEcCCCcEEEE--EeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCce-e
Q 001295          945 QSDTRVQFHQDQIHFLV--VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK-L 1021 (1106)
Q Consensus       945 ~~i~~~~~s~dg~~l~~--~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~-~ 1021 (1106)
                       +-..++|+|....|++  |.|..|.+||+........+..   ..+.+.++|+++|.+|++|+..|.|..||+...+ .
T Consensus       210 -P~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y---~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~P  285 (673)
T KOG4378|consen  210 -PCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY---SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAP  285 (673)
T ss_pred             -CcCcceecCCccceEEEecccceEEEeecccccccceeee---cCCcceeeecCCceEEEeecCCceEEEEecccCCCC
Confidence             6688999998776665  7999999999987776666643   6799999999999999999999999999997654 3


Q ss_pred             EEeeCCCcccCCCCCCCCccceEEEEeC
Q 001295         1022 RCRINPSAYLPAGVSSSNVHPLVIAAHP 1049 (1106)
Q Consensus      1022 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 1049 (1106)
                      +..+.       .|... |.  .++|-|
T Consensus       286 v~v~s-------ah~~s-Vt--~vafq~  303 (673)
T KOG4378|consen  286 VAVRS-------AHDAS-VT--RVAFQP  303 (673)
T ss_pred             ceEee-------ecccc-ee--EEEeee
Confidence            33332       33233 66  777777

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.82  E-value=7.9e-19  Score=178.49  Aligned_cols=196  Identities=16%  Similarity=0.238  Sum_probs=154.7

Q ss_pred             CCCEEEEEeCCCeEEEEEccCCceeeeeee------------------eccccCCeeEEEEcCCCCceEEEEecCCCcEE
Q 001295          423 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLE------------------IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK  484 (1106)
Q Consensus       423 dg~~las~~~d~~v~iwd~~~~~~~~~~~~------------------l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~  484 (1106)
                      -|+|+|.|+.|..|.|||+.--..+.+...                  -.+|+..|.+++|+..-+. +|+|||.|.+|+
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~n-VLaSgsaD~TV~  269 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRN-VLASGSADKTVK  269 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccce-eEEecCCCceEE
Confidence            478999999999999999864322222222                  2379999999999998887 899999999999


Q ss_pred             EEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEee
Q 001295          485 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF  564 (1106)
Q Consensus       485 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~  564 (1106)
                      +||+.+|++..++..|.+.|.++.|++... .+|++|+.|++|.+.|.+........=...+.|..++|.+...      
T Consensus       270 lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p-~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se------  342 (463)
T KOG0270|consen  270 LWDVDTGKPKSSITHHGKKVQTLEWHPYEP-SVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSE------  342 (463)
T ss_pred             EEEcCCCCcceehhhcCCceeEEEecCCCc-eEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCc------
Confidence            999999999999999999999999987654 8999999999999999985222111111122344455544433      


Q ss_pred             eccceeEEEEcCCCCEEEEEECCCeEEEEECCCc-ceeEEEccCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEccCC
Q 001295          565 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       565 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                                    ..++++..||+|+-+|++.. +++.++..|..  .|.++++++ ...++++++.|+.+++|++...
T Consensus       343 --------------~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~--~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~  406 (463)
T KOG0270|consen  343 --------------NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDD--EISGLSVNIQTPGLLSTASTDKVVKLWKFDVD  406 (463)
T ss_pred             --------------eeEEEecCCceEEeeecCCCCCceeEEEeccC--CcceEEecCCCCcceeeccccceEEEEeecCC
Confidence                          35777889999999999875 88888887754  899999998 4567889999999999998644

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.82  E-value=2.1e-17  Score=171.27  Aligned_cols=503  Identities=14%  Similarity=0.148  Sum_probs=288.5

Q ss_pred             cCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEE--ccCCC
Q 001295          348 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW--SPDGS  425 (1106)
Q Consensus       348 ~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~--spdg~  425 (1106)
                      .|...|.|+.|+.+.. ++.+ +.|..+.+|.-.+.......     .+.....+..     -|   +....-  -....
T Consensus        12 r~~e~vc~v~w~~~ee-i~~~-~dDh~~~~~~~~~~~s~~~~-----~~p~df~pt~-----~h---~~~rs~~~g~~~d   76 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEE-IYFV-SDDHQIFKWSDVSRDSVEVA-----KLPDDFVPTD-----MH---LGGRSSGGGKGSD   76 (737)
T ss_pred             ccceeEEeecccccce-EEEe-ccCceEEEeecccchhhhhh-----hCCcccCCcc-----cc---ccccccCCCCCcc
Confidence            4777788999999988 3544 45566666554333221110     0000000000     01   000000  01235


Q ss_pred             EEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeE
Q 001295          426 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY  505 (1106)
Q Consensus       426 ~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~  505 (1106)
                      .|+.++.||.+.|-+-.. +.-+   ...+|.+.|.+-.|+|||.  -|+|.|+||.|++|. ++|-...++.....+|.
T Consensus        77 ~~~i~s~DGkf~il~k~~-rVE~---sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~  149 (737)
T KOG1524|consen   77 TLLICSNDGRFVILNKSA-RVER---SISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIR  149 (737)
T ss_pred             eEEEEcCCceEEEecccc-hhhh---hhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEe-ccchHHHHHhhcCceeE
Confidence            688888999988887543 2222   4779999999999999999  799999999999999 88887777777788999


Q ss_pred             EEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEE
Q 001295          506 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG  585 (1106)
Q Consensus       506 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  585 (1106)
                      |++|.|+.+ +.+++.+  +.+.+=-+.....+..+..|.+-|.++.|++..                     +.+++|+
T Consensus       150 c~~W~p~S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s---------------------~lI~sgG  205 (737)
T KOG1524|consen  150 CARWAPNSN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQS---------------------NIIASGG  205 (737)
T ss_pred             EEEECCCCC-ceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccc---------------------cceeecC
Confidence            999988765 4555554  445554555556666777777766666555554                     5799999


Q ss_pred             CCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCC
Q 001295          586 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKP  665 (1106)
Q Consensus       586 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  665 (1106)
                      +|-..++||. .|+.+..-..|.+  +|++++|.|+ +.++.++. +++|+=   .                        
T Consensus       206 ED~kfKvWD~-~G~~Lf~S~~~ey--~ITSva~npd-~~~~v~S~-nt~R~~---~------------------------  253 (737)
T KOG1524|consen  206 EDFRFKIWDA-QGANLFTSAAEEY--AITSVAFNPE-KDYLLWSY-NTARFS---S------------------------  253 (737)
T ss_pred             CceeEEeecc-cCcccccCChhcc--ceeeeeeccc-cceeeeee-eeeeec---C------------------------
Confidence            9999999997 5666666666655  7999999999 66666664 233310   0                        


Q ss_pred             CcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccc
Q 001295          666 TISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK  745 (1106)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~  745 (1106)
                                                                                                 ...+.
T Consensus       254 ---------------------------------------------------------------------------p~~GS  258 (737)
T KOG1524|consen  254 ---------------------------------------------------------------------------PRVGS  258 (737)
T ss_pred             ---------------------------------------------------------------------------CCccc
Confidence                                                                                       13467


Q ss_pred             eEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEE
Q 001295          746 ISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYV  825 (1106)
Q Consensus       746 i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l  825 (1106)
                      |..++||+||..+++++..|.+.+=..-.                      ..+.                    -+.+=
T Consensus       259 ifnlsWS~DGTQ~a~gt~~G~v~~A~~ie----------------------q~l~--------------------~~n~~  296 (737)
T KOG1524|consen  259 IFNLSWSADGTQATCGTSTGQLIVAYAIE----------------------QQLV--------------------SGNLK  296 (737)
T ss_pred             eEEEEEcCCCceeeccccCceEEEeeeeh----------------------hhhh--------------------hccce
Confidence            88999999999999999998876421110                      0000                    00011


Q ss_pred             EEE-eCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEec
Q 001295          826 MSA-SGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH  904 (1106)
Q Consensus       826 ~~~-sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~  904 (1106)
                      ++. ....|.+-|+.++.+ ..+. .+..|....+..  + +|+++. ...|++|.-......-.+.+....+.-+.-  
T Consensus       297 ~t~~~r~~I~vrdV~~~v~-d~LE-~p~rv~k~sL~Y--~-hLvvaT-s~qvyiys~knwntpiiidgre~tr~lieq--  368 (737)
T KOG1524|consen  297 ATSKSRKSITVRDVATGVQ-DILE-FPQRVVKFSLGY--G-HLVVAT-SLQVYIYSEKNWNTPIIIDGREDTRNLIEQ--  368 (737)
T ss_pred             eEeeccceEEeehhhhhHH-HHhh-Cccceeeeeece--e-EEEEEe-ccEEEEEecCCccCcEEEeccccchhHhhh--
Confidence            111 135566777766544 2232 344566666544  2 343333 346888775554433334443333321111  


Q ss_pred             CCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE--E-eCCeEEEEec-CCceEeee
Q 001295          905 ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--V-HETQLAIFET-TKLECVKQ  980 (1106)
Q Consensus       905 d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~--~-~d~~v~i~d~-~~~~~~~~  980 (1106)
                       +...+-..+..+|.+|..+.......    ...|..  ......-..|-....|+.  . +..-+.+||. .+|+....
T Consensus       369 -~ek~fli~dgsSi~lytyegR~~~np----~~Pg~~--~dlL~~rtlsLandtLaird~ad~kvlhlFd~istgk~qgD  441 (737)
T KOG1524|consen  369 -GEKYFLILDGSSIWLYTYEGRLHLNP----RYPGSQ--IDLLTWRTLSLANDTLAIRDNADPKVLHLFDLISTGKRQGD  441 (737)
T ss_pred             -hhhheEEecCcEEEEEEecCceecCC----CCCCcc--cccccceeeecccceEEeecCCCCeeEEeccCCCCCcccCC
Confidence             11111122233455555544111000    011100  011111122223333444  2 3345778888 67665443


Q ss_pred             cccCCCCCCeeEEEECC----CCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEE
Q 001295          981 WVPRESSAPITHATFSC----DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFA 1056 (1106)
Q Consensus       981 ~~~~~h~~~v~~l~~s~----d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~ 1056 (1106)
                      -..-.|...|..++...    +.+.++.-...+.++|=.+.+.-...++-     .-|   .-+.  .++|+.  -.-++
T Consensus       442 gk~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~-----KiG---TmVh--tLawnd--ttNiL  509 (737)
T KOG1524|consen  442 GKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIY-----KIG---TMVH--TLAWND--TTNIL  509 (737)
T ss_pred             ccccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchhhhh-----hhh---hhhh--hhhhcc--cccee
Confidence            22124566777777654    44566666666666665544321111111     111   0122  688874  55677


Q ss_pred             EEeCCCcEEEEeecCC
Q 001295         1057 LGLSDGGVHVFEPLES 1072 (1106)
Q Consensus      1057 t~~~Dg~v~vW~~~~~ 1072 (1106)
                      .|-.|+++.||-.+..
T Consensus       510 cglqDt~fsVWy~pn~  525 (737)
T KOG1524|consen  510 CGLQDTCFSVWYYPNE  525 (737)
T ss_pred             eeeccceEEEEEcCCc
Confidence            8889999999987654

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.81  E-value=6.8e-18  Score=169.76  Aligned_cols=163  Identities=14%  Similarity=0.226  Sum_probs=131.9

Q ss_pred             cCeEEEEEccCCC-EEEEEeCCCeEEEEEccCCc------eeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEE
Q 001295          413 VSVNRVIWSPDGS-LFGVAYSRHIVQIYSYHGGD------EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV  485 (1106)
Q Consensus       413 ~~V~~l~~spdg~-~las~~~d~~v~iwd~~~~~------~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~i  485 (1106)
                      .+|..+.|.+++. .||+|+.|..|+||.+..++      .+.-...|..|...|+++.|+|+|.  +++||+++|.|.+
T Consensus        14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~ge--lLASg~D~g~v~l   91 (434)
T KOG1009|consen   14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGE--LLASGGDGGEVFL   91 (434)
T ss_pred             CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcC--eeeecCCCceEEE
Confidence            4899999999777 99999999999999887543      3445567889999999999999999  8999999999999


Q ss_pred             EeCC--------C--------CceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeE
Q 001295          486 WDAT--------N--------GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCT  549 (1106)
Q Consensus       486 wd~~--------~--------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  549 (1106)
                      |-..        +        ....+.+.+|...|..++|+++.  .++++++.|..+++||+..+.....+..|.+.+.
T Consensus        92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~--~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvq  169 (434)
T KOG1009|consen   92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS--NFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQ  169 (434)
T ss_pred             EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC--ceeeeeeccceEEEEEeccceeEeeccccccccc
Confidence            9755        2        12345678899999999996554  7999999999999999999888888888887777


Q ss_pred             EEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcce
Q 001295          550 TMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL  600 (1106)
Q Consensus       550 ~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  600 (1106)
                      .++|.|-++                     ++++-+.|...+.+.+...+.
T Consensus       170 gvawDpl~q---------------------yv~s~s~dr~~~~~~~~~~~~  199 (434)
T KOG1009|consen  170 GVAWDPLNQ---------------------YVASKSSDRHPEGFSAKLKQV  199 (434)
T ss_pred             eeecchhhh---------------------hhhhhccCcccceeeeeeeee
Confidence            777666655                     677777777666666544433

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=1.5e-19  Score=205.23  Aligned_cols=259  Identities=13%  Similarity=0.144  Sum_probs=201.3

Q ss_pred             eccCCCCcEEEEEecCCCe---EEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc
Q 001295          346 TLNQGSSPMSMDFHPVQQT---LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  422 (1106)
Q Consensus       346 ~~~h~~~v~~~~~sp~g~~---llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp  422 (1106)
                      .+.-...-+.++|.+.|..   |||.|..||.|.+||...-  +...          ... .......|.+.|..+.|++
T Consensus        60 s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~--~~~~----------~~~-~la~~~~h~G~V~gLDfN~  126 (1049)
T KOG0307|consen   60 SLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASI--IANA----------SEE-VLATKSKHTGPVLGLDFNP  126 (1049)
T ss_pred             cccccccceeeeecccCCCccceeeccccCCceEEecchhh--ccCc----------chH-HHhhhcccCCceeeeeccc
Confidence            3445677889999998886   6999999999999998652  0000          001 1113678999999999999


Q ss_pred             CC-CEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccC
Q 001295          423 DG-SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE  501 (1106)
Q Consensus       423 dg-~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~  501 (1106)
                      .+ .+||+|+.||.|.|||+..-+...... -..-.+.|.+++|+..-.. +|++++.+|.+.|||++..+.+-.+..|.
T Consensus       127 ~q~nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii~ls~~~  204 (1049)
T KOG0307|consen  127 FQGNLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSH-ILASGSPSGRAVIWDLRKKKPIIKLSDTP  204 (1049)
T ss_pred             cCCceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhH-HhhccCCCCCceeccccCCCcccccccCC
Confidence            55 499999999999999998754322110 1124568999999987776 79999999999999999998887777665


Q ss_pred             C--CeEEEeccccCCceEEEEEecC-C--eEEEEeCCCCC-ceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEc
Q 001295          502 A--PVYSVCPHHKENIQFIFSTALD-G--KIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD  575 (1106)
Q Consensus       502 ~--~v~~~~~~~~~~~~~l~s~~~d-g--~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~  575 (1106)
                      +  .+..+.|+|+... .+++++.| +  .|.+||++... ....+..|...|.++.|++.+.                 
T Consensus       205 ~~~~~S~l~WhP~~aT-ql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~-----------------  266 (1049)
T KOG0307|consen  205 GRMHCSVLAWHPDHAT-QLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDP-----------------  266 (1049)
T ss_pred             CccceeeeeeCCCCce-eeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCc-----------------
Confidence            4  4678899998764 45555443 3  69999998654 4456678888888888877663                 


Q ss_pred             CCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccC-CCEEEEEeCCCcEEEEEccCC
Q 001295          576 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD-GCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       576 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                         .++++++.|+.|.+||..+++.+..+...  ..++..+.|.|. -..+++++-||.|.|+.+.+.
T Consensus       267 ---~lllSsgkD~~ii~wN~~tgEvl~~~p~~--~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~  329 (1049)
T KOG0307|consen  267 ---RLLLSSGKDNRIICWNPNTGEVLGELPAQ--GNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT  329 (1049)
T ss_pred             ---hhhhcccCCCCeeEecCCCceEeeecCCC--CcceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence               36899999999999999999999999764  348999999995 458999999999999998765

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.81  E-value=1.3e-18  Score=164.62  Aligned_cols=308  Identities=14%  Similarity=0.199  Sum_probs=199.3

Q ss_pred             ceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEee-CCCCeeEEEEEecCCCeEEEeeecccee
Q 001295          492 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-APGRWCTTMAYSADGTRTYQGFRKRSLG  570 (1106)
Q Consensus       492 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~~~~~~~~~i~  570 (1106)
                      .+.+.+++|.+.|+++.|..+   .+|++|..-|.|++|++.+......+. .+...|+.+...|++.            
T Consensus         5 dP~fvLRp~~~~v~s~~fqa~---~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~------------   69 (323)
T KOG0322|consen    5 DPFFVLRPHSSSVTSVLFQAN---ERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDS------------   69 (323)
T ss_pred             CCeeEeccccchheehhhccc---hhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcc------------
Confidence            356678899999999997543   369999999999999999988887777 4556777777777665            


Q ss_pred             EEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCC-cEEEEEccCCchhhhhh
Q 001295          571 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN-GIKILATSDGIRLLRTF  649 (1106)
Q Consensus       571 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~  649 (1106)
                                +.+-+.|..+.+|++..+..+..-.     -.++++.|.+-.  +...+... .+..++-+.... .+..
T Consensus        70 ----------l~tqgRd~~L~lw~ia~s~~i~i~S-----i~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde-~h~~  131 (323)
T KOG0322|consen   70 ----------LDTQGRDPLLILWTIAYSAFISIHS-----IVVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDE-THKQ  131 (323)
T ss_pred             ----------hhhcCCCceEEEEEccCcceEEEee-----eeccccccccce--eccCCCcchhheecCCcccch-hhhh
Confidence                      8889999999999998766544322     124444443311  11111100 111111111100 0000


Q ss_pred             cccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCC
Q 001295          650 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP  729 (1106)
Q Consensus       650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~  729 (1106)
                      .+                                                             +..-.+.+-+-      
T Consensus       132 D~-------------------------------------------------------------g~~tqv~i~dd------  144 (323)
T KOG0322|consen  132 DG-------------------------------------------------------------GDTTQVQIADD------  144 (323)
T ss_pred             cc-------------------------------------------------------------CccceeEccCc------
Confidence            00                                                             00001111110      


Q ss_pred             ccceecccCccccccceEEEEEcC-CC-c-eEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCC
Q 001295          730 NQCRSLRLPENLRATKISRLIFTN-SG-N-AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  806 (1106)
Q Consensus       730 ~~~~~~~~~~~~~~~~i~~~~~s~-~~-~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  806 (1106)
                              +..+..+.+.+..+.. ++ . .+++|.++|.+.+||++.+..-             .+......+....  
T Consensus       145 --------~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~-------------~~~~~~~kv~~~~--  201 (323)
T KOG0322|consen  145 --------SERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKI-------------IQLPQSSKVESPN--  201 (323)
T ss_pred             --------hhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCcee-------------eccccccccccch--
Confidence                    0012334444444222 22 2 3556667899999998864211             1111111111111  


Q ss_pred             CCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCC--Ccee--eeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEe
Q 001295          807 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT--FKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV  881 (1106)
Q Consensus       807 ~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~--~~~~--~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~  881 (1106)
                      ..|..+|.++.+.+.-..=++|+ +..+..|++..  +.+.  .++......|..+.+-| |++++|+++.|+.||||+.
T Consensus       202 ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVysw  280 (323)
T KOG0322|consen  202 ASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSW  280 (323)
T ss_pred             hhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEe
Confidence            23899999999987655556666 67788888763  3322  22333345688899999 9999999999999999999


Q ss_pred             ecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeC
Q 001295          882 RVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS  923 (1106)
Q Consensus       882 ~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~  923 (1106)
                      ++...+..++-|++.|++++|+||...+|.++.|++|.+|++
T Consensus       281 rtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  281 RTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             ccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            999999999999999999999999999999999999999986

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.81  E-value=1.3e-17  Score=162.37  Aligned_cols=227  Identities=13%  Similarity=0.129  Sum_probs=172.9

Q ss_pred             CCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCC---CCeeEEEEecCCCEEEEEe
Q 001295          753 NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPE---EAVPCFALSKNDSYVMSAS  829 (1106)
Q Consensus       753 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~---~~v~~l~~s~~~~~l~~~s  829 (1106)
                      |+..++++.+.+.-|++||.-++                      ++... .....|.   ....+++|+|||.+|++|.
T Consensus       121 P~t~l~a~ssr~~PIh~wdaftG----------------------~lraS-y~~ydh~de~taAhsL~Fs~DGeqlfaGy  177 (406)
T KOG2919|consen  121 PSTNLFAVSSRDQPIHLWDAFTG----------------------KLRAS-YRAYDHQDEYTAAHSLQFSPDGEQLFAGY  177 (406)
T ss_pred             CccceeeeccccCceeeeecccc----------------------ccccc-hhhhhhHHhhhhheeEEecCCCCeEeecc
Confidence            67788888888999988876543                      32211 1111122   2356899999999999999


Q ss_pred             CCeEEEEEcC-CCceee---ee----cCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEE
Q 001295          830 GGKISLFNMM-TFKTMA---TF----MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLA  901 (1106)
Q Consensus       830 dg~i~vwd~~-~~~~~~---~~----~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~  901 (1106)
                      ..+|++||+. .|..-.   ++    .+..+-|.+++|+|.+.+.+|+|+....+-||.-..+.++..+-+|.+.|+.|+
T Consensus       178 krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~  257 (406)
T KOG2919|consen  178 KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQ  257 (406)
T ss_pred             cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEE
Confidence            9999999993 443221   11    233566899999998889999999999999999888999999999999999999


Q ss_pred             EecCCCEEEEEcC-CCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeEEEEecCC-ceEe
Q 001295          902 FSHALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK-LECV  978 (1106)
Q Consensus       902 ~s~d~~~l~s~s~-Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v~i~d~~~-~~~~  978 (1106)
                      |.+||+.|++|+. |-.|..||++..+.    .+-.+..|......-......|+|++|+++ .||.|++||+++ +..+
T Consensus       258 ~~edGn~lfsGaRk~dkIl~WDiR~~~~----pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~  333 (406)
T KOG2919|consen  258 WCEDGNKLFSGARKDDKILCWDIRYSRD----PVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEV  333 (406)
T ss_pred             eccCcCeecccccCCCeEEEEeehhccc----hhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcc
Confidence            9999999999985 67899999987543    223333333312233345567899999996 899999999998 6655


Q ss_pred             eecccCCCCCCeeEEEECCCCCEEEEEEcC
Q 001295          979 KQWVPRESSAPITHATFSCDSQLVYACFLD 1008 (1106)
Q Consensus       979 ~~~~~~~h~~~v~~l~~s~d~~~l~t~s~D 1008 (1106)
                      ..+.  .|+..+..+++.|-=.++|+++..
T Consensus       334 sv~~--~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  334 SVTG--NYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             cccc--cccccccceecCcccceeeeccCc
Confidence            5554  678999999999998888888755

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=3.4e-18  Score=177.52  Aligned_cols=229  Identities=14%  Similarity=0.178  Sum_probs=162.2

Q ss_pred             ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEE
Q 001295          407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  486 (1106)
Q Consensus       407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw  486 (1106)
                      .+.||++.|.|++|+.||.+||+|+.|-.+.|||.-..+.+..+  -.||...|.++.|-|.....+++||..|..|+++
T Consensus        45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI--~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf  122 (758)
T KOG1310|consen   45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI--STGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF  122 (758)
T ss_pred             hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee--ecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence            48999999999999999999999999999999999877766654  3499999999999998666689999999999999


Q ss_pred             eCCCC----------ceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecC
Q 001295          487 DATNG----------AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD  556 (1106)
Q Consensus       487 d~~~~----------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  556 (1106)
                      |+...          ...+.+..|...|..++..+... +.+.+++.||+|+-+|++....-..  ...-.+..+.+.++
T Consensus       123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P-htfwsasEDGtirQyDiREph~c~p--~~~~~~~l~ny~~~  199 (758)
T KOG1310|consen  123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP-HTFWSASEDGTIRQYDIREPHVCNP--DEDCPSILVNYNPQ  199 (758)
T ss_pred             ecccccccccccCccchhhhhhhhhhhhhheecCCCCC-ceEEEecCCcceeeecccCCccCCc--cccccHHHHHhchh
Confidence            99842          23445667888898888544332 7899999999999999986321110  00001111111121


Q ss_pred             CCeEEEeeeccceeEEEEcCCC-CEEEEEECCCeEEEEECCC--------cc----------eeEEEc-cCC-C-----C
Q 001295          557 GTRTYQGFRKRSLGVVQFDTTK-NRFLAAGDDFSIKFWDMDS--------VQ----------LLTSID-ADG-G-----L  610 (1106)
Q Consensus       557 ~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~--------~~----------~~~~~~-~~~-~-----~  610 (1106)
                      -         -...++.++|.. .+|++|+.|-..++||.+.        +.          ++..+. +|- .     .
T Consensus       200 l---------ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~  270 (758)
T KOG1310|consen  200 L---------IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLD  270 (758)
T ss_pred             h---------heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccc
Confidence            1         144556666655 4677799999999999421        11          122221 110 0     0


Q ss_pred             ---CCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhh
Q 001295          611 ---PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF  649 (1106)
Q Consensus       611 ---~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  649 (1106)
                         ..++-++|+|+|.-|++.-....|+++|+..++.....+
T Consensus       271 ~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~  312 (758)
T KOG1310|consen  271 RYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYF  312 (758)
T ss_pred             cceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence               124557899999988888877899999998875544433

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.79  E-value=9.4e-17  Score=156.60  Aligned_cols=383  Identities=14%  Similarity=0.156  Sum_probs=242.6

Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEE
Q 001295          417 RVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI  496 (1106)
Q Consensus       417 ~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~  496 (1106)
                      -++|||+|+|+|+++.- .+.|-|..+-+..+.    .---+.|..+.|..|.-. .+.....|+.|.+|++...+-...
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~ql----f~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck   86 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQL----FLCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK   86 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHH----HHHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence            46899999999999765 688888887654432    122457899999988875 566677899999999999988889


Q ss_pred             EeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeee-----------
Q 001295          497 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR-----------  565 (1106)
Q Consensus       497 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~-----------  565 (1106)
                      +.....++.+++|+|++. ..|.+...|-.|.+|.+.+..... +.-....+..++|.+||+......+           
T Consensus        87 Ideg~agls~~~WSPdgr-hiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~  164 (447)
T KOG4497|consen   87 IDEGQAGLSSISWSPDGR-HILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISS  164 (447)
T ss_pred             eccCCCcceeeeECCCcc-eEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecccHHHHHHHHh
Confidence            988889999999977653 677788889999999998754433 3344455689999999984332221           


Q ss_pred             -------------ccceeEEEEcCCCCEEEEEE--CCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeC
Q 001295          566 -------------KRSLGVVQFDTTKNRFLAAG--DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN  630 (1106)
Q Consensus       566 -------------~~~i~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  630 (1106)
                                   .-..+.+.|+|||+.++.-.  -+-.|+.|...              -.+..++|+|.+++|++|+.
T Consensus       165 c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~--------------lG~k~v~wsP~~qflavGsy  230 (447)
T KOG4497|consen  165 CKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERG--------------LGLKFVEWSPCNQFLAVGSY  230 (447)
T ss_pred             hHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeec--------------cceeEEEeccccceEEeecc
Confidence                         12455688999998877532  22233322221              24778999999999999999


Q ss_pred             CCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccc
Q 001295          631 DNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRI  710 (1106)
Q Consensus       631 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  710 (1106)
                      |+.+|+.+--+- +.+..+.. ...+                                                      
T Consensus       231 D~~lrvlnh~tW-k~f~eflh-l~s~------------------------------------------------------  254 (447)
T KOG4497|consen  231 DQMLRVLNHFTW-KPFGEFLH-LCSY------------------------------------------------------  254 (447)
T ss_pred             chhhhhhceeee-eehhhhcc-chhc------------------------------------------------------
Confidence            999998765443 22222110 0000                                                      


Q ss_pred             cccCCCc-eeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCc
Q 001295          711 TEESNDK-SKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAP  789 (1106)
Q Consensus       711 ~~~~d~~-i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~  789 (1106)
                         .|.+ ..++.-       ....       -.-...++.|.|..-         ...+|............   ...+
T Consensus       255 ---~dp~~~~~~ke-------~~~~-------~ql~~~cLsf~p~~~---------~a~~~~~se~~YE~~~~---pv~~  305 (447)
T KOG4497|consen  255 ---HDPTLHLLEKE-------TFSI-------VQLLHHCLSFTPTDL---------EAHIWEESETIYEQQMT---PVKV  305 (447)
T ss_pred             ---cCchhhhhhhh-------hcch-------hhhcccccccCCCcc---------ccCccccchhhhhhhhc---ceee
Confidence               0000 000000       0000       001112333433221         01111111000000000   0000


Q ss_pred             cccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEeC---CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCce
Q 001295          790 QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG---GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI  866 (1106)
Q Consensus       790 ~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sd---g~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~  866 (1106)
                      ....+.+      +.  .+..-.+.-++|++|..++++-.|   +.+.+||++..+....+. ...+|.+..|.| ....
T Consensus       306 ~~lkp~t------D~--pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP-~~pr  375 (447)
T KOG4497|consen  306 HKLKPPT------DF--PNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDP-GRPR  375 (447)
T ss_pred             ecccCCC------CC--CCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCC-CCce
Confidence            0000000      01  113455778999999999999985   569999999876655544 567899999999 6666


Q ss_pred             EEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCc
Q 001295          867 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQ  917 (1106)
Q Consensus       867 la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~  917 (1106)
                      |+.......+++|......++..- +..-.|..++|..+|..++-.+.|..
T Consensus       376 L~vctg~srLY~W~psg~~~V~vP-~~GF~i~~l~W~~~g~~i~l~~kDaf  425 (447)
T KOG4497|consen  376 LVVCTGKSRLYFWAPSGPRVVGVP-KKGFNIQKLQWLQPGEFIVLCGKDAF  425 (447)
T ss_pred             EEEEcCCceEEEEcCCCceEEecC-CCCceeeeEEecCCCcEEEEEcCCce
Confidence            766766778999997765555433 33467999999999999999999974

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.79  E-value=1.3e-17  Score=162.25  Aligned_cols=275  Identities=16%  Similarity=0.255  Sum_probs=190.7

Q ss_pred             CeeEEEEcCCCCceEEEEecCCCcEEEEeCCCC-------cee-----EEEe-ccCCCeEEEecc-----ccCCceEEEE
Q 001295          459 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-------AKQ-----YIFE-GHEAPVYSVCPH-----HKENIQFIFS  520 (1106)
Q Consensus       459 ~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-------~~~-----~~~~-~h~~~v~~~~~~-----~~~~~~~l~s  520 (1106)
                      -...+.|+|||.  .|++-+.|..+++|++...       ..+     .+++ .....|...+|.     ..++..++++
T Consensus        51 f~kgckWSPDGS--ciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~  128 (406)
T KOG2919|consen   51 FLKGCKWSPDGS--CILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAV  128 (406)
T ss_pred             hhccceeCCCCc--eEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeee
Confidence            345689999999  7999999999999987521       111     1111 123456666764     2355578999


Q ss_pred             EecCCeEEEEeCCCCCceeEeeCCCC-----eeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEEC
Q 001295          521 TALDGKIKAWLYDNLGSRVDYEAPGR-----WCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM  595 (1106)
Q Consensus       521 ~~~dg~i~iwd~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~  595 (1106)
                      .+.+.-|++||.-+++....+..-..     ...+++|+||                     |.+|++| ....|+++|+
T Consensus       129 ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~D---------------------GeqlfaG-ykrcirvFdt  186 (406)
T KOG2919|consen  129 SSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPD---------------------GEQLFAG-YKRCIRVFDT  186 (406)
T ss_pred             ccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCC---------------------CCeEeec-ccceEEEeec
Confidence            99999999999998877665543221     2234455555                     4556655 4578999998


Q ss_pred             -CCcceeEEEc-----cCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcC
Q 001295          596 -DSVQLLTSID-----ADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTIS  668 (1106)
Q Consensus       596 -~~~~~~~~~~-----~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  668 (1106)
                       +.|+......     ..+..+.+.+++|+| +.+.+++|+....+-|+.-... .++..                    
T Consensus       187 ~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~-~pl~l--------------------  245 (406)
T KOG2919|consen  187 SRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-RPLQL--------------------  245 (406)
T ss_pred             cCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC-Cceee--------------------
Confidence             5554332221     112234577889999 6668888888777766643322 11000                    


Q ss_pred             chhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEE
Q 001295          669 PISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISR  748 (1106)
Q Consensus       669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~  748 (1106)
                                                                                                      
T Consensus       246 --------------------------------------------------------------------------------  245 (406)
T KOG2919|consen  246 --------------------------------------------------------------------------------  245 (406)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEE
Q 001295          749 LIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA  828 (1106)
Q Consensus       749 ~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~  828 (1106)
                                                                             +  .+|.+.|+.++|.++|+.|.+|
T Consensus       246 -------------------------------------------------------l--ggh~gGvThL~~~edGn~lfsG  268 (406)
T KOG2919|consen  246 -------------------------------------------------------L--GGHGGGVTHLQWCEDGNKLFSG  268 (406)
T ss_pred             -------------------------------------------------------e--cccCCCeeeEEeccCcCeeccc
Confidence                                                                   0  1277778888888888888888


Q ss_pred             e--CCeEEEEEcCC-CceeeeecCCCC-CeeEEEE--ecCCCceEEEeeCCCcEEEEEeec-ceEEEEecCcccCeeEEE
Q 001295          829 S--GGKISLFNMMT-FKTMATFMPPPP-AATFLAF--HPQDNNIIAIGMDDSSIQIYNVRV-DEVKSKLKGHSKRITGLA  901 (1106)
Q Consensus       829 s--dg~i~vwd~~~-~~~~~~~~~~~~-~v~~l~~--s~~d~~~la~g~~dg~v~iwd~~~-~~~~~~l~~h~~~V~~l~  901 (1106)
                      +  +..|..||++. ...+..+..|.. .=..|.|  .| ++++||+|+.||.|++||+++ |..+..+..|+..|+.++
T Consensus       269 aRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~-~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvs  347 (406)
T KOG2919|consen  269 ARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDP-KGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVS  347 (406)
T ss_pred             ccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCC-CCceeeccCCCccEEEEecCCCCCccccccccccccccee
Confidence            7  67899999874 455566666654 2233444  56 789999999999999999998 777888889999999999


Q ss_pred             EecCCCEEEEEcCCC
Q 001295          902 FSHALNVLVSSGADS  916 (1106)
Q Consensus       902 ~s~d~~~l~s~s~Dg  916 (1106)
                      ++|--.++|+++...
T Consensus       348 lnP~mpilatssGqr  362 (406)
T KOG2919|consen  348 LNPIMPILATSSGQR  362 (406)
T ss_pred             cCcccceeeeccCce
Confidence            999988888887643

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.78  E-value=1.6e-17  Score=166.03  Aligned_cols=216  Identities=14%  Similarity=0.249  Sum_probs=164.9

Q ss_pred             cccCCCCcCeEEEEEcc-CCCEEEEEeCCCeEEEEEccCCce----eeeeeeeccccCCeeEEEEcCCCCceEEEEecCC
Q 001295          406 ALVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD  480 (1106)
Q Consensus       406 ~~~~~h~~~V~~l~~sp-dg~~las~~~d~~v~iwd~~~~~~----~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d  480 (1106)
                      ....||+++|..++|+| +...||+||.|.+|.||++..+-.    ..+...|.||...|..++|+|...+ +|+|+|.|
T Consensus        75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~D  153 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSD  153 (472)
T ss_pred             CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCC
Confidence            35789999999999999 888999999999999999875433    2445678999999999999999887 79999999


Q ss_pred             CcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCC-eeEEEEEecCCCe
Q 001295          481 KTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGR-WCTTMAYSADGTR  559 (1106)
Q Consensus       481 ~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~  559 (1106)
                      .+|.+||+.+|+.+-++. |...|.+++|+  .||.+|++.+.|+.||+||.++++.+..-..|.+ .-....|-.+|. 
T Consensus       154 n~v~iWnv~tgeali~l~-hpd~i~S~sfn--~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-  229 (472)
T KOG0303|consen  154 NTVSIWNVGTGEALITLD-HPDMVYSMSFN--RDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-  229 (472)
T ss_pred             ceEEEEeccCCceeeecC-CCCeEEEEEec--cCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-
Confidence            999999999999999988 99999999985  5568999999999999999999887766555543 233344444443 


Q ss_pred             EEEeeeccceeEEEEcCCCCEEEEEE----CCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEE-EEeCCCcE
Q 001295          560 TYQGFRKRSLGVVQFDTTKNRFLAAG----DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA-VSTNDNGI  634 (1106)
Q Consensus       560 ~~~~~~~~~i~~~~~~~~~~~l~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~-~~~~dg~i  634 (1106)
                                           +++.+    .+..+-+||...-+.-..+..-.....|.---|.+|..++. +|-.|+.|
T Consensus       230 ---------------------i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~I  288 (472)
T KOG0303|consen  230 ---------------------IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSI  288 (472)
T ss_pred             ---------------------eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcce
Confidence                                 44432    57889999976543222221111122355455778777765 45569999


Q ss_pred             EEEEccCCchhhh
Q 001295          635 KILATSDGIRLLR  647 (1106)
Q Consensus       635 ~iwd~~~~~~~~~  647 (1106)
                      |.|.+.+....+.
T Consensus       289 RYyEit~d~P~~h  301 (472)
T KOG0303|consen  289 RYFEITNEPPFVH  301 (472)
T ss_pred             EEEEecCCCceeE
Confidence            9999987743333

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=3.6e-16  Score=169.22  Aligned_cols=498  Identities=14%  Similarity=0.178  Sum_probs=292.6

Q ss_pred             CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccC-----
Q 001295          349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD-----  423 (1106)
Q Consensus       349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd-----  423 (1106)
                      |...-.++.|+|.|  |+|.|+. ..|.|-|..+-+.+..                   +.-|...|+.+.|.|-     
T Consensus        14 ~~sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iqs-------------------ie~h~s~V~~VrWap~~~p~~   71 (1062)
T KOG1912|consen   14 SRSNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQS-------------------IELHQSAVTSVRWAPAPSPRD   71 (1062)
T ss_pred             CcccccccccCccc--eEEEecC-ceEEEEehhhhhhhhc-------------------cccCccceeEEEeccCCCchh
Confidence            34457889999999  6888875 5788889887776653                   6788899999999883     


Q ss_pred             -C------CEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcC---CCCceEEEEecCCCcEEEEeCCCCce
Q 001295          424 -G------SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH---PNKQLCVITCGDDKTIKVWDATNGAK  493 (1106)
Q Consensus       424 -g------~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~---d~~~~~l~s~~~d~~i~iwd~~~~~~  493 (1106)
                       +      -+||++...|.|.+||...+..+.   .+..|..+|..++|-+   +.+. +|+.-....+|.+|+..+|+.
T Consensus        72 llS~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k  147 (1062)
T KOG1912|consen   72 LLSPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEK  147 (1062)
T ss_pred             ccCccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCce
Confidence             1      257778888999999999876554   4778999999999965   3434 455556678999999999999


Q ss_pred             eEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCC-------eEEEe--e
Q 001295          494 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT-------RTYQG--F  564 (1106)
Q Consensus       494 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-------~~~~~--~  564 (1106)
                      ............|+.+.|-...+ +..-+..|.+.+-+.-.....      ..+...+..+.+-.       ....|  +
T Consensus       148 ~Wk~~ys~~iLs~f~~DPfd~rh-~~~l~s~g~vl~~~~l~~sep------~~pgk~~qI~sd~Sdl~~lere~at~ns~  220 (1062)
T KOG1912|consen  148 FWKYDYSHEILSCFRVDPFDSRH-FCVLGSKGFVLSCKDLGLSEP------DVPGKEFQITSDHSDLAHLERETATGNST  220 (1062)
T ss_pred             eeccccCCcceeeeeeCCCCcce-EEEEccCceEEEEeccCCCCC------CCCceeEEEecCccchhhhhhhhhccccc
Confidence            88877666777778877765544 444445666666554321110      00111111111100       00000  0


Q ss_pred             ecc--c------eeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccC--CCEEEEEeCCCcE
Q 001295          565 RKR--S------LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD--GCLLAVSTNDNGI  634 (1106)
Q Consensus       565 ~~~--~------i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~--~~~l~~~~~dg~i  634 (1106)
                      ...  .      ...++|+|.-+.++.......+.++|++-..++.......+  .+.-+.+-|+  ...|+++-.||.+
T Consensus       221 ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~--~akfv~vlP~~~rd~LfclH~nG~l  298 (1062)
T KOG1912|consen  221 TSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERG--GAKFVDVLPDPRRDALFCLHSNGRL  298 (1062)
T ss_pred             cCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccC--CcceeEeccCCCcceEEEEecCCeE
Confidence            000  0      11245677666666666678899999999888888876644  3455777775  4578999999999


Q ss_pred             EEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccC
Q 001295          635 KILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEES  714 (1106)
Q Consensus       635 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  714 (1106)
                      .+|-.+.....++.-..+              +                                           +.+.
T Consensus       299 tirvrk~~~~~f~~~~~~--------------l-------------------------------------------~~dl  321 (1062)
T KOG1912|consen  299 TIRVRKEEPTEFKKPNAS--------------L-------------------------------------------SMDL  321 (1062)
T ss_pred             EEEEeeccCccccccchh--------------h-------------------------------------------cccc
Confidence            999654321111110000              0                                           0000


Q ss_pred             CCceeeEecCCCCCCccceecccCccccccceEEEEEcCC-CceEEEeecCceEEEeeccccccCCCCccccccCccccC
Q 001295          715 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQ  793 (1106)
Q Consensus       715 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~  793 (1106)
                      ...+.+-...                 .+..+......|. ...++..-.+|...+|.+..+....++.....       
T Consensus       322 ~~Q~~~vr~m-----------------~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~i-------  377 (1062)
T KOG1912|consen  322 GEQVHVVRPM-----------------EEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSI-------  377 (1062)
T ss_pred             ccceEEEeec-----------------hhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccc-------
Confidence            0011110000                 1111222222332 33344445556666666654332222111000       


Q ss_pred             CCCCCccccccCCCCCCCCeeEEEEecCCC-------EEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCC-
Q 001295          794 PPSGIMMTNDVTDSNPEEAVPCFALSKNDS-------YVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDN-  864 (1106)
Q Consensus       794 ~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~-------~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~-  864 (1106)
                                       .-+.  -|+-++.       .+..-+ ||     ....|........- ...+-..-.| .+ 
T Consensus       378 -----------------el~~--pf~f~~~~~~v~k~~l~~LS~dg-----~h~sGs~~~~~~p~-p~~t~~~~~p-~~n  431 (1062)
T KOG1912|consen  378 -----------------ELVL--PFDFNLSTKLVGKTSLISLSDDG-----SHSSGSTCVRMRPM-PELTKVENDP-GGN  431 (1062)
T ss_pred             -----------------cccc--cccccCceeehhhccccchhhcC-----CCCCCceeeecccC-cccceeecCC-CCC
Confidence                             0000  0110111       111111 22     01111111111100 0001111111 11 


Q ss_pred             ------ceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEE---------EEcCCCcEEEEeCCCcccc
Q 001295          865 ------NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLV---------SSGADSQLCVWSSDGWEKQ  929 (1106)
Q Consensus       865 ------~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~---------s~s~Dg~i~vwd~~~~~~~  929 (1106)
                            .++|.|...|+|.++|+.++...+.+..|++.|.++.|.-...++-         +++.-+.+.|-|+.+|...
T Consensus       432 ~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk  511 (1062)
T KOG1912|consen  432 TPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSK  511 (1062)
T ss_pred             ccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEccccccc
Confidence                  2889999999999999999999999999999999999976544332         2222345778899887654


Q ss_pred             cceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeEEEEecCCceEeeecccCCCCCC-eeEEEEC
Q 001295          930 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAP-ITHATFS  996 (1106)
Q Consensus       930 ~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v~i~d~~~~~~~~~~~~~~h~~~-v~~l~~s  996 (1106)
                      ..+-++..     ...+|+.+..|.-|+||+.. .+.-+.+||+++..+++....   .-+ |+.+.|+
T Consensus       512 ~fR~l~~~-----despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~---a~P~it~leWs  572 (1062)
T KOG1912|consen  512 RFRGLQKP-----DESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSL---ALPLITVLEWS  572 (1062)
T ss_pred             ccccCCCC-----CcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhh---cCCcEEEEeec
Confidence            33322222     23689999999999999995 788899999998887766542   334 8888888

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.76  E-value=3.8e-17  Score=163.42  Aligned_cols=243  Identities=14%  Similarity=0.205  Sum_probs=174.1

Q ss_pred             CcceeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEE
Q 001295          340 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI  419 (1106)
Q Consensus       340 ~~~~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~  419 (1106)
                      +...-..-+|+.+|..++|+|-+...||+||.|.+|.||++..+.....            ..-....|.||...|--++
T Consensus        71 d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~------------ltepvv~L~gH~rrVg~V~  138 (472)
T KOG0303|consen   71 DASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD------------LTEPVVELYGHQRRVGLVQ  138 (472)
T ss_pred             CCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC------------cccceEEEeecceeEEEEe
Confidence            4444455679999999999999888999999999999999987654431            1112225899999999999


Q ss_pred             Ecc-CCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEe
Q 001295          420 WSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE  498 (1106)
Q Consensus       420 ~sp-dg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  498 (1106)
                      |+| -.+.|++++.|.+|.+||+.+|+.+-   ++. |.+.|+++.|+.||.  +++|.+.|+.|+|||.++++.+..-.
T Consensus       139 wHPtA~NVLlsag~Dn~v~iWnv~tgeali---~l~-hpd~i~S~sfn~dGs--~l~TtckDKkvRv~dpr~~~~v~e~~  212 (472)
T KOG0303|consen  139 WHPTAPNVLLSAGSDNTVSIWNVGTGEALI---TLD-HPDMVYSMSFNRDGS--LLCTTCKDKKVRVIDPRRGTVVSEGV  212 (472)
T ss_pred             ecccchhhHhhccCCceEEEEeccCCceee---ecC-CCCeEEEEEeccCCc--eeeeecccceeEEEcCCCCcEeeecc
Confidence            999 56788999999999999999998765   455 999999999999999  89999999999999999999999888


Q ss_pred             ccCCCeE-EEeccccCCceEEEEEe---cCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEE
Q 001295          499 GHEAPVY-SVCPHHKENIQFIFSTA---LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF  574 (1106)
Q Consensus       499 ~h~~~v~-~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~  574 (1106)
                      +|.+.-. .+.|  -.++.++-+|-   .+..+-+||..+.+....+..-.                   +...+..-.|
T Consensus       213 ~heG~k~~Raif--l~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-------------------tSnGvl~PFy  271 (472)
T KOG0303|consen  213 AHEGAKPARAIF--LASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-------------------TSNGVLLPFY  271 (472)
T ss_pred             cccCCCcceeEE--eccCceeeeccccccccceeccCcccccCcceeEEec-------------------cCCceEEeee
Confidence            8875422 2233  34555444442   36789999987655443221100                   0011222234


Q ss_pred             cCCCCEEE-EEECCCeEEEEECCCcce-eEEEccCCCCCCcCeEEEccC
Q 001295          575 DTTKNRFL-AAGDDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNKD  621 (1106)
Q Consensus       575 ~~~~~~l~-~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~s~~  621 (1106)
                      +++.+.+. +|-.|+.||-|.+....+ ++.+.......+-..+.|.|.
T Consensus       272 D~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPK  320 (472)
T KOG0303|consen  272 DPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPK  320 (472)
T ss_pred             cCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcccccccccc
Confidence            45545554 456799999999976553 333333333344566777774

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.76  E-value=2e-18  Score=187.90  Aligned_cols=286  Identities=17%  Similarity=0.233  Sum_probs=213.9

Q ss_pred             ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEE
Q 001295          407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  486 (1106)
Q Consensus       407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw  486 (1106)
                      -+.+|...|+|+.|...|.++++|+.|..|+||..+++.++.   ...||.+.|+.++.+.+..  ++++++.|..|++|
T Consensus       185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA---s~rGhs~ditdlavs~~n~--~iaaaS~D~vIrvW  259 (1113)
T KOG0644|consen  185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA---SCRGHSGDITDLAVSSNNT--MIAAASNDKVIRVW  259 (1113)
T ss_pred             HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhc---cCCCCccccchhccchhhh--hhhhcccCceEEEE
Confidence            378999999999999999999999999999999999988776   7899999999999998887  89999999999999


Q ss_pred             eCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeec
Q 001295          487 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  566 (1106)
Q Consensus       487 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  566 (1106)
                      .+.++.++..+.||++.|++++|+|..      +.+.||++++||.+- ..             +.+.|...        
T Consensus       260 rl~~~~pvsvLrghtgavtaiafsP~~------sss~dgt~~~wd~r~-~~-------------~~y~prp~--------  311 (1113)
T KOG0644|consen  260 RLPDGAPVSVLRGHTGAVTAIAFSPRA------SSSDDGTCRIWDARL-EP-------------RIYVPRPL--------  311 (1113)
T ss_pred             ecCCCchHHHHhccccceeeeccCccc------cCCCCCceEeccccc-cc-------------cccCCCCC--------
Confidence            999999999999999999999987643      778899999998871 10             01111100        


Q ss_pred             cceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhh
Q 001295          567 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL  646 (1106)
Q Consensus       567 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  646 (1106)
                                                 +..++            ..+.++.|-.++.-+++|+.|+.-..|...-.    
T Consensus       312 ---------------------------~~~~~------------~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l----  348 (1113)
T KOG0644|consen  312 ---------------------------KFTEK------------DLVDSILFENNGDRFLTGSRDGEARNHEFEQL----  348 (1113)
T ss_pred             ---------------------------Ccccc------------cceeeeeccccccccccccCCcccccchhhHh----
Confidence                                       00000            12334555556666777777777666643210    


Q ss_pred             hhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCC
Q 001295          647 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL  726 (1106)
Q Consensus       647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~  726 (1106)
                                                                                                      
T Consensus       349 --------------------------------------------------------------------------------  348 (1113)
T KOG0644|consen  349 --------------------------------------------------------------------------------  348 (1113)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCC
Q 001295          727 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  806 (1106)
Q Consensus       727 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  806 (1106)
                                             ++..++-.+++...|                                          
T Consensus       349 -----------------------~~~~~~lif~t~ssd------------------------------------------  363 (1113)
T KOG0644|consen  349 -----------------------AWRSNLLIFVTRSSD------------------------------------------  363 (1113)
T ss_pred             -----------------------hhhccceEEEecccc------------------------------------------
Confidence                                   000000001111111                                          


Q ss_pred             CCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecce
Q 001295          807 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE  885 (1106)
Q Consensus       807 ~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~  885 (1106)
                                    -..+.+++- +-.+++|++.+|...+.+.+|...+..+.++|-+.++..+++.||...|||+-.|.
T Consensus       364 --------------~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~  429 (1113)
T KOG0644|consen  364 --------------LSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGI  429 (1113)
T ss_pred             --------------ccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCC
Confidence                          002233333 66789999999999999999999999999999778888899999999999999887


Q ss_pred             EEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcc
Q 001295          886 VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE  927 (1106)
Q Consensus       886 ~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~  927 (1106)
                      .++...-....+..-+||+||..++....-|.+.|.....++
T Consensus       430 pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~  471 (1113)
T KOG0644|consen  430 PIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK  471 (1113)
T ss_pred             cceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence            765543334456678999999999998888999998766544

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=8.3e-16  Score=143.79  Aligned_cols=288  Identities=11%  Similarity=0.123  Sum_probs=195.6

Q ss_pred             ceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCE
Q 001295          745 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY  824 (1106)
Q Consensus       745 ~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~  824 (1106)
                      .|.+-+++|.+++++++..+|.|.+..+..-.....             ...|+......  ..|..+|+.++|.  ..+
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa-------------~~~gk~~iv~e--qahdgpiy~~~f~--d~~   74 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA-------------EPPGKLKIVPE--QAHDGPIYYLAFH--DDF   74 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc-------------CCCCCcceeec--cccCCCeeeeeee--hhh
Confidence            455668899999999999999999998764221100             11222222222  3499999999997  568


Q ss_pred             EEEEeCCeEEEEEcCCCce------eee--ecC-----CCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEec
Q 001295          825 VMSASGGKISLFNMMTFKT------MAT--FMP-----PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK  891 (1106)
Q Consensus       825 l~~~sdg~i~vwd~~~~~~------~~~--~~~-----~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~  891 (1106)
                      |++++||.|+-|.......      +..  ...     .-..|+++-..|..+.+|. ++.|+.++-||+++|+..++++
T Consensus        75 Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~-AgGD~~~y~~dlE~G~i~r~~r  153 (325)
T KOG0649|consen   75 LLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILF-AGGDGVIYQVDLEDGRIQREYR  153 (325)
T ss_pred             eeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEE-ecCCeEEEEEEecCCEEEEEEc
Confidence            8899999999988653221      111  111     2346899999995555554 5579999999999999999999


Q ss_pred             CcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCC--CCCceEEEcCCCcEEEEEeCCeEEE
Q 001295          892 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA--QSDTRVQFHQDQIHFLVVHETQLAI  969 (1106)
Q Consensus       892 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~s~dg~~l~~~~d~~v~i  969 (1106)
                      ||++.|.++.--.....+.||++||++|+||.++++....  +...+......  ..-.-.+..-+..+|+++....+.+
T Consensus       154 GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~--ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lsl  231 (325)
T KOG0649|consen  154 GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSM--IEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSL  231 (325)
T ss_pred             CCcceeeeeeecccCcceeecCCCccEEEEeccccceeEE--eccccChhhcCcccCceeEEEeccCceEEecCCCceeE
Confidence            9999999999866667899999999999999999765332  21111111000  1112245566778899988889999


Q ss_pred             EecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeC
Q 001295          970 FETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHP 1049 (1106)
Q Consensus       970 ~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 1049 (1106)
                      |.++..++...+..   ..+|..+.|.  ...++++++...|.-|.+. |.+...+.      -++  ..-+..+..-+|
T Consensus       232 whLrsse~t~vfpi---pa~v~~v~F~--~d~vl~~G~g~~v~~~~l~-Gvl~a~ip------~~s--~~c~s~s~~~~p  297 (325)
T KOG0649|consen  232 WHLRSSESTCVFPI---PARVHLVDFV--DDCVLIGGEGNHVQSYTLN-GVLQANIP------VES--TACYSASWQTSP  297 (325)
T ss_pred             EeccCCCceEEEec---ccceeEeeee--cceEEEeccccceeeeeec-cEEEEecc------CCc--cceeeecccCCc
Confidence            99999999988876   4577888885  4477778888889999865 45544444      111  001211222333


Q ss_pred             CCCCEEEEEeCCCcEEEEe
Q 001295         1050 QEPNEFALGLSDGGVHVFE 1068 (1106)
Q Consensus      1050 ~d~~~l~t~~~Dg~v~vW~ 1068 (1106)
                        -+++-.++..+.+.|..
T Consensus       298 --~k~~s~ag~s~~~~i~~  314 (325)
T KOG0649|consen  298 --IKFISIAGFSNKLHILK  314 (325)
T ss_pred             --eEEEEecccceeeeeee
Confidence              45666666667776653

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.76  E-value=8.3e-17  Score=154.30  Aligned_cols=258  Identities=16%  Similarity=0.255  Sum_probs=187.5

Q ss_pred             ccCCCCcEEEEEecCCCeEEEEEecc-------CcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEE
Q 001295          347 LNQGSSPMSMDFHPVQQTLLLVGTNV-------GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI  419 (1106)
Q Consensus       347 ~~h~~~v~~~~~sp~g~~llatg~~d-------g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~  419 (1106)
                      +.|.++|+.++-+|..+.+|+|...+       ..+.||.+.......  +..       .......+-..+-+.|.|+.
T Consensus        60 ~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S--~~~-------tlE~v~~Ldteavg~i~cve  130 (370)
T KOG1007|consen   60 FHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS--NSS-------TLECVASLDTEAVGKINCVE  130 (370)
T ss_pred             hcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc--ccc-------hhhHhhcCCHHHhCceeeEE
Confidence            34789999999999988899987663       247788876432221  000       01111112235566999999


Q ss_pred             EccCCCEEEEEeCCCeEEEEEccCCcee-eeee--eeccccCCeeEEEEcC--CCCceEEEEecCCCcEEEEeCCCCcee
Q 001295          420 WSPDGSLFGVAYSRHIVQIYSYHGGDEV-RQHL--EIDAHVGGVNDIAFSH--PNKQLCVITCGDDKTIKVWDATNGAKQ  494 (1106)
Q Consensus       420 ~spdg~~las~~~d~~v~iwd~~~~~~~-~~~~--~l~~h~~~V~~~~~s~--d~~~~~l~s~~~d~~i~iwd~~~~~~~  494 (1106)
                      |.|++..||+-. |..|.+|++..+..+ ..+.  .-.+|....++-+|+|  |+.  .+++. .|+++..||+++.++.
T Consensus       131 w~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn--qv~tt-~d~tl~~~D~RT~~~~  206 (370)
T KOG1007|consen  131 WEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN--QVATT-SDSTLQFWDLRTMKKN  206 (370)
T ss_pred             EcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc--eEEEe-CCCcEEEEEccchhhh
Confidence            999999999875 788999999977652 2110  1123566788899998  555  45554 4799999999998877


Q ss_pred             EEEe-ccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCC-ceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEE
Q 001295          495 YIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV  572 (1106)
Q Consensus       495 ~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~  572 (1106)
                      ..+. .|...|..+.|+|+.. .+|++|+.||.|++||.+..+ ++..+..|.++|.++.|.|...              
T Consensus       207 ~sI~dAHgq~vrdlDfNpnkq-~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hd--------------  271 (370)
T KOG1007|consen  207 NSIEDAHGQRVRDLDFNPNKQ-HILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHD--------------  271 (370)
T ss_pred             cchhhhhcceeeeccCCCCce-EEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccc--------------
Confidence            6654 6888999999988765 689999999999999998754 5668899999999999988765              


Q ss_pred             EEcCCCCEEEEEECCCeEEEEECCCcc-----------------------------eeEEEccCCCCCCcCeEEEcc-CC
Q 001295          573 QFDTTKNRFLAAGDDFSIKFWDMDSVQ-----------------------------LLTSIDADGGLPASPRIRFNK-DG  622 (1106)
Q Consensus       573 ~~~~~~~~l~~~~~d~~i~iwd~~~~~-----------------------------~~~~~~~~~~~~~v~~v~~s~-~~  622 (1106)
                            +.+++|+.|..|.+|.+.+-.                             .+.++..  +...|.+++|+. |.
T Consensus       272 ------qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyde--hEDSVY~~aWSsadP  343 (370)
T KOG1007|consen  272 ------QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDE--HEDSVYALAWSSADP  343 (370)
T ss_pred             ------eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccc--cccceEEEeeccCCC
Confidence                  357788888888888754211                             1123333  355799999998 66


Q ss_pred             CEEEEEeCCCcEEEEEcc
Q 001295          623 CLLAVSTNDNGIKILATS  640 (1106)
Q Consensus       623 ~~l~~~~~dg~i~iwd~~  640 (1106)
                      -.+|+-+.||.+.|=.+.
T Consensus       344 WiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  344 WIFASLSYDGRVIISSVP  361 (370)
T ss_pred             eeEEEeccCceEEeecCC
Confidence            778888999999876553

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=1e-17  Score=190.52  Aligned_cols=278  Identities=13%  Similarity=0.173  Sum_probs=210.1

Q ss_pred             cCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCce----EEEeecCceEEEeeccccccCCCCccccccC
Q 001295          713 ESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA----ILALASNAIHLLWKWQRTERNSSGKATASVA  788 (1106)
Q Consensus       713 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~----l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~  788 (1106)
                      +.+.++.+|.+........++....  .....+...++|.+.+..    |+.|..||.|.+|+...-..           
T Consensus        36 st~~slEifeld~~~~~~dlk~~~s--~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~-----------  102 (1049)
T KOG0307|consen   36 STSASLEIFELDFSDESSDLKPVGS--LQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA-----------  102 (1049)
T ss_pred             ccccccceeeecccCcccccccccc--ccccccceeeeecccCCCccceeeccccCCceEEecchhhcc-----------
Confidence            5566777777765444432221111  114567789999988776    77777899999998753100           


Q ss_pred             ccccCCCCCCccccccCCCCCCCCeeEEEEecCCC-EEEEEe-CCeEEEEEcCCCceeeeec--CCCCCeeEEEEecCCC
Q 001295          789 PQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS-YVMSAS-GGKISLFNMMTFKTMATFM--PPPPAATFLAFHPQDN  864 (1106)
Q Consensus       789 ~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~-~l~~~s-dg~i~vwd~~~~~~~~~~~--~~~~~v~~l~~s~~d~  864 (1106)
                             .+. .........|.+.|..+.|++... +||+|+ ||.|.|||+...+...++.  .....|.+++|.....
T Consensus       103 -------~~~-~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvq  174 (1049)
T KOG0307|consen  103 -------NAS-EEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVS  174 (1049)
T ss_pred             -------Ccc-hHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhh
Confidence                   111 000011124999999999999776 899998 7999999999766555542  2456899999998778


Q ss_pred             ceEEEeeCCCcEEEEEeecceEEEEecCccc--CeeEEEEecCC-CEEEEEcCCC---cEEEEeCCCcccccceeecccC
Q 001295          865 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK--RITGLAFSHAL-NVLVSSGADS---QLCVWSSDGWEKQKNRFLQIPT  938 (1106)
Q Consensus       865 ~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~--~V~~l~~s~d~-~~l~s~s~Dg---~i~vwd~~~~~~~~~~~~~~~~  938 (1106)
                      ++||+++.+|.+.|||++..+.+-.+..|.+  .+..|+|+|++ ..|++++.|.   .|.+||++.-    ...+++..
T Consensus       175 hILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a----ssP~k~~~  250 (1049)
T KOG0307|consen  175 HILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA----SSPLKILE  250 (1049)
T ss_pred             HHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc----CCchhhhc
Confidence            9999999999999999999888888877665  46789999986 4566666553   5999998763    33566667


Q ss_pred             CCCCCCCCCceEEEcCCC-cEEEE-EeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCC-EEEEEEcCCeEEEEE
Q 001295          939 GRTPTAQSDTRVQFHQDQ-IHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACFLDATVCVFS 1015 (1106)
Q Consensus       939 ~~~~~~~~i~~~~~s~dg-~~l~~-~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~-~l~t~s~Dg~i~vwd 1015 (1106)
                      +|..   .|.++.|++.+ ++|++ +.|++|.+|+.++++.+..+..  ...++..+.|+|..- .+++++-||.|.|+.
T Consensus       251 ~H~~---GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~--~~nW~fdv~w~pr~P~~~A~asfdgkI~I~s  325 (1049)
T KOG0307|consen  251 GHQR---GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA--QGNWCFDVQWCPRNPSVMAAASFDGKISIYS  325 (1049)
T ss_pred             cccc---ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC--CCcceeeeeecCCCcchhhhheeccceeeee
Confidence            7775   89999999977 77777 6999999999999999999874  478999999999665 789999999999999


Q ss_pred             cCCce
Q 001295         1016 AANLK 1020 (1106)
Q Consensus      1016 ~~~~~ 1020 (1106)
                      +.++.
T Consensus       326 l~~~~  330 (1049)
T KOG0307|consen  326 LQGTD  330 (1049)
T ss_pred             eecCC
Confidence            97664

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.75  E-value=1.9e-16  Score=154.53  Aligned_cols=344  Identities=13%  Similarity=0.177  Sum_probs=236.4

Q ss_pred             EEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEE-eCCCcEEEEEccCCchhhhhh
Q 001295          571 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS-TNDNGIKILATSDGIRLLRTF  649 (1106)
Q Consensus       571 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~  649 (1106)
                      -.+|+|+|+++++.+.- .+.|-|..+-+..+.+..-   ..|.-+.|..|.-+++++ ..++.|.+|++... +-...+
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cl---dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp-ew~ckI   87 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCL---DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP-EWYCKI   87 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHH---HHhhheeeeccceeeeeeeeccceEEEEEeecc-eeEEEe
Confidence            35688888899988765 7888888877665555432   246678899887776655 66889999998654 111100


Q ss_pred             cccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCC
Q 001295          650 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP  729 (1106)
Q Consensus       650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~  729 (1106)
                                                                                                      
T Consensus        88 --------------------------------------------------------------------------------   87 (447)
T KOG4497|consen   88 --------------------------------------------------------------------------------   87 (447)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccceecccCccccccceEEEEEcCCCceEEEeec-CceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCC
Q 001295          730 NQCRSLRLPENLRATKISRLIFTNSGNAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSN  808 (1106)
Q Consensus       730 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  808 (1106)
                                ......+..+++||||+.++..++ +-.|.+|.+.+.+                    +..+.  .    
T Consensus        88 ----------deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~--------------------~~~~~--~----  131 (447)
T KOG4497|consen   88 ----------DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK--------------------GYLLP--H----  131 (447)
T ss_pred             ----------ccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce--------------------eEEec--c----
Confidence                      114567889999999987776666 7888888876321                    11111  1    


Q ss_pred             CCCCeeEEEEecCCCEEEEEe--C--CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeC--CCcEEEEEee
Q 001295          809 PEEAVPCFALSKNDSYVMSAS--G--GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD--DSSIQIYNVR  882 (1106)
Q Consensus       809 ~~~~v~~l~~s~~~~~l~~~s--d--g~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~--dg~v~iwd~~  882 (1106)
                      ....+..++|+|||++.+..+  |  .-+.|..-.....++.+....-..+.+.|+| ||..||+=..  +-.|+.|.  
T Consensus       132 pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsP-dg~~laVwd~~Leykv~aYe--  208 (447)
T KOG4497|consen  132 PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSP-DGNWLAVWDNVLEYKVYAYE--  208 (447)
T ss_pred             cccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECC-CCcEEEEecchhhheeeeee--
Confidence            344568899999999999887  3  2255555555666777777777889999999 8877775321  11222222  


Q ss_pred             cceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCccccc--------------------------------
Q 001295          883 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK--------------------------------  930 (1106)
Q Consensus       883 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~--------------------------------  930 (1106)
                                -.-.+..++|+|.+++|+.|+.|+.+||-+--+++...                                
T Consensus       209 ----------~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLs  278 (447)
T KOG4497|consen  209 ----------RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLS  278 (447)
T ss_pred             ----------eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccc
Confidence                      12457789999999999999999999887644332211                                


Q ss_pred             --------------------------ceeecccCCCCCCCCCCceEEEcCCCcEEEEEeC---CeEEEEecCCceEeeec
Q 001295          931 --------------------------NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE---TQLAIFETTKLECVKQW  981 (1106)
Q Consensus       931 --------------------------~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d---~~v~i~d~~~~~~~~~~  981 (1106)
                                                ...++...........+..++||+|..++++-.|   +.+-+||+...+....+
T Consensus       279 f~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL  358 (447)
T KOG4497|consen  279 FTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL  358 (447)
T ss_pred             cCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh
Confidence                                      0111222233333456788999999999999655   47999999988776555


Q ss_pred             ccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCC
Q 001295          982 VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD 1061 (1106)
Q Consensus       982 ~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~D 1061 (1106)
                      .   ...+|....|.|....|+.+.....+++|....-..++.-.       .  +..|.  .+.|+- +|..++..+.|
T Consensus       359 i---Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~-------~--GF~i~--~l~W~~-~g~~i~l~~kD  423 (447)
T KOG4497|consen  359 I---QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPK-------K--GFNIQ--KLQWLQ-PGEFIVLCGKD  423 (447)
T ss_pred             h---hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCC-------C--Cceee--eEEecC-CCcEEEEEcCC
Confidence            3   36799999999999998888878889999977644443211       1  22344  899997 58889988888


Q ss_pred             Cc
Q 001295         1062 GG 1063 (1106)
Q Consensus      1062 g~ 1063 (1106)
                      .-
T Consensus       424 af  425 (447)
T KOG4497|consen  424 AF  425 (447)
T ss_pred             ce
Confidence            63

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=1.2e-16  Score=157.34  Aligned_cols=151  Identities=18%  Similarity=0.262  Sum_probs=118.2

Q ss_pred             EEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEE
Q 001295          473 CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMA  552 (1106)
Q Consensus       473 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  552 (1106)
                      .++++-..|.|++||..+++.+..++++...++.+.|......+.+.+|+.||+|++||++.......+.....+     
T Consensus        42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~-----  116 (376)
T KOG1188|consen   42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS-----  116 (376)
T ss_pred             eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC-----
Confidence            688888899999999999999999999999999999876545578999999999999999986554333222111     


Q ss_pred             EecCCCeEEEeeeccceeEEEEcCCCCEEEEEE----CCCeEEEEECCCcce-eEEEccCCCCCCcCeEEEcc-CCCEEE
Q 001295          553 YSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG----DDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNK-DGCLLA  626 (1106)
Q Consensus       553 ~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~d~~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~s~-~~~~l~  626 (1106)
                                   ..+..+++.+-.++.+++|.    .+..|.+||++..+. +..+ ...|...|+++.|+| +.++|+
T Consensus       117 -------------~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~-~eSH~DDVT~lrFHP~~pnlLl  182 (376)
T KOG1188|consen  117 -------------GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQL-NESHNDDVTQLRFHPSDPNLLL  182 (376)
T ss_pred             -------------CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhh-hhhccCcceeEEecCCCCCeEE
Confidence                         12445555555666677765    478899999998776 5444 234567899999999 788999


Q ss_pred             EEeCCCcEEEEEccCC
Q 001295          627 VSTNDNGIKILATSDG  642 (1106)
Q Consensus       627 ~~~~dg~i~iwd~~~~  642 (1106)
                      +|+.||.|.++|+...
T Consensus       183 SGSvDGLvnlfD~~~d  198 (376)
T KOG1188|consen  183 SGSVDGLVNLFDTKKD  198 (376)
T ss_pred             eecccceEEeeecCCC
Confidence            9999999999998654

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.75  E-value=1.4e-15  Score=168.02  Aligned_cols=279  Identities=10%  Similarity=0.118  Sum_probs=178.4

Q ss_pred             cccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeec-CceEEEeeccccccCCCCcccccc
Q 001295          709 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS-NAIHLLWKWQRTERNSSGKATASV  787 (1106)
Q Consensus       709 l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~  787 (1106)
                      .++...++.|.+|++...........+.     .......++++|++++|++++. ++.|.+|++..             
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-----~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~-------------   66 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVD-----VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIAD-------------   66 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEe-----cCCCCccEEECCCCCEEEEEECCCCcEEEEEECC-------------
Confidence            3455678999999996422212222221     2345678899999998877654 68888888741             


Q ss_pred             CccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCC-Cc---eeeeecCCCCCeeEEEEec
Q 001295          788 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMT-FK---TMATFMPPPPAATFLAFHP  861 (1106)
Q Consensus       788 ~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~-~~---~~~~~~~~~~~v~~l~~s~  861 (1106)
                              +|.+.....  .........++++|+++++++++  ++.|.+|++.+ +.   .+..+. +.....+++++|
T Consensus        67 --------~g~l~~~~~--~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p  135 (330)
T PRK11028         67 --------DGALTFAAE--SPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP  135 (330)
T ss_pred             --------CCceEEeee--ecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC
Confidence                    111100000  00223457899999999999887  68999999974 22   222222 223467789999


Q ss_pred             CCCceE-EEeeCCCcEEEEEeecceEEE-------EecCcccCeeEEEEecCCCEEEEEcC-CCcEEEEeCCCc--cccc
Q 001295          862 QDNNII-AIGMDDSSIQIYNVRVDEVKS-------KLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDGW--EKQK  930 (1106)
Q Consensus       862 ~d~~~l-a~g~~dg~v~iwd~~~~~~~~-------~l~~h~~~V~~l~~s~d~~~l~s~s~-Dg~i~vwd~~~~--~~~~  930 (1106)
                       +++++ ++...++.|.+||+.+...+.       .... ......++|+|||++|+++.. +++|.+|+++..  +...
T Consensus       136 -~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~  213 (330)
T PRK11028        136 -DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIEC  213 (330)
T ss_pred             -CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEE
Confidence             77666 455567999999997632221       1111 234578999999999988876 899999999742  2211


Q ss_pred             ceeecccCCCCCCCCCCceEEEcCCCcEEEEE--eCCeEEEEecCCce----EeeecccCCCCCCeeEEEECCCCCEEEE
Q 001295          931 NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLE----CVKQWVPRESSAPITHATFSCDSQLVYA 1004 (1106)
Q Consensus       931 ~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~--~d~~v~i~d~~~~~----~~~~~~~~~h~~~v~~l~~s~d~~~l~t 1004 (1106)
                      ...+...............+.|+|+|++++++  .++.|.+|++....    .+.....   ......+.|+|||++|++
T Consensus       214 ~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~---~~~p~~~~~~~dg~~l~v  290 (330)
T PRK11028        214 VQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT---ETQPRGFNIDHSGKYLIA  290 (330)
T ss_pred             EEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec---cccCCceEECCCCCEEEE
Confidence            11111111111111223468999999999996  46799999985432    2232221   124567899999999998


Q ss_pred             EEc-CCeEEEEEcC--Ccee
Q 001295         1005 CFL-DATVCVFSAA--NLKL 1021 (1106)
Q Consensus      1005 ~s~-Dg~i~vwd~~--~~~~ 1021 (1106)
                      ++. +++|.+|+++  ++.+
T Consensus       291 a~~~~~~v~v~~~~~~~g~l  310 (330)
T PRK11028        291 AGQKSHHISVYEIDGETGLL  310 (330)
T ss_pred             EEccCCcEEEEEEcCCCCcE
Confidence            775 8999999874  4443

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=7.9e-17  Score=158.60  Aligned_cols=198  Identities=13%  Similarity=0.176  Sum_probs=149.4

Q ss_pred             EEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc--CCCEEEEEeCCCeEEEEEcc
Q 001295          365 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGSLFGVAYSRHIVQIYSYH  442 (1106)
Q Consensus       365 llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~las~~~d~~v~iwd~~  442 (1106)
                      .+|++-..|.|++||..+++.+..                   +++|...+..++|..  ....+.+|+.||+|++||++
T Consensus        42 ~vav~lSngsv~lyd~~tg~~l~~-------------------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~R  102 (376)
T KOG1188|consen   42 AVAVSLSNGSVRLYDKGTGQLLEE-------------------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIR  102 (376)
T ss_pred             eEEEEecCCeEEEEeccchhhhhe-------------------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEee
Confidence            588888899999999999887763                   688888899999987  46778999999999999999


Q ss_pred             CCceeeeeeeecccc-CCeeEEEEcCCCCceEEEEec----CCCcEEEEeCCCCce-eEE-EeccCCCeEEEeccccCCc
Q 001295          443 GGDEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITCG----DDKTIKVWDATNGAK-QYI-FEGHEAPVYSVCPHHKENI  515 (1106)
Q Consensus       443 ~~~~~~~~~~l~~h~-~~V~~~~~s~d~~~~~l~s~~----~d~~i~iwd~~~~~~-~~~-~~~h~~~v~~~~~~~~~~~  515 (1106)
                      +......+ .+.+|. .+..+++..-.++  ++++|.    .+-.|.+||++..+. +.. ...|...|++++|+|+.. 
T Consensus       103 s~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p-  178 (376)
T KOG1188|consen  103 SQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP-  178 (376)
T ss_pred             cchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCC-
Confidence            87665433 345565 4667777765666  677665    467899999998766 544 456999999999998765 


Q ss_pred             eEEEEEecCCeEEEEeCCCCCce---eEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEE
Q 001295          516 QFIFSTALDGKIKAWLYDNLGSR---VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF  592 (1106)
Q Consensus       516 ~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i  592 (1106)
                      ++|++|+.||.|.+||+......   .....+...|..+.|..++-                    ..+.+-+...+..+
T Consensus       179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~y--------------------krI~clTH~Etf~~  238 (376)
T KOG1188|consen  179 NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKY--------------------KRIMCLTHMETFAI  238 (376)
T ss_pred             CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCc--------------------ceEEEEEccCceeE
Confidence            79999999999999999754221   11222334455666655551                    23778888899999


Q ss_pred             EECCCcceeEEEc
Q 001295          593 WDMDSVQLLTSID  605 (1106)
Q Consensus       593 wd~~~~~~~~~~~  605 (1106)
                      |++..+.....+.
T Consensus       239 ~ele~~~~~~~~~  251 (376)
T KOG1188|consen  239 YELEDGSEETWLE  251 (376)
T ss_pred             EEccCCChhhccc
Confidence            9999887555443

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.74  E-value=1.2e-15  Score=152.13  Aligned_cols=241  Identities=14%  Similarity=0.203  Sum_probs=184.1

Q ss_pred             CCCeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCC--cEEEEEeecceEE
Q 001295          810 EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVK  887 (1106)
Q Consensus       810 ~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg--~v~iwd~~~~~~~  887 (1106)
                      ...+..+.|..+...|..|+....++|+.+..............|.-+-||.   .++|..+.+.  .+++++.+.+..+
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I   81 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI   81 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCceE
Confidence            4456777899999999999966678888876554333333444577777875   4666665544  5999999888877


Q ss_pred             EEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-E--eC
Q 001295          888 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V--HE  964 (1106)
Q Consensus       888 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~--~d  964 (1106)
                      ..+. ...+|.+|.+.  .+.|+++=.+. |.|||+++.+.     +.......+....+.++.+++++.++|. +  ..
T Consensus        82 Ce~~-fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~Mkl-----LhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~  152 (391)
T KOG2110|consen   82 CEIF-FPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKL-----LHTIETTPPNPKGLCALSPNNANCYLAYPGSTTS  152 (391)
T ss_pred             EEEe-cCCceEEEEEc--cceEEEEEccc-EEEEeccccee-----ehhhhccCCCccceEeeccCCCCceEEecCCCCC
Confidence            7765 45668888886  44666665554 99999998554     3333332222234566666667779998 3  56


Q ss_pred             CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCe-EEEEEcCCceeEEeeCCCcccCCCCCCCCccce
Q 001295          965 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT-VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPL 1043 (1106)
Q Consensus       965 ~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1043 (1106)
                      |.|.+||+.+.+.+..+.  .|.+++.+++|+++|.+|||+|+.|+ ||||.+.+|+.+.++....+ +       +...
T Consensus       153 GdV~l~d~~nl~~v~~I~--aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~-~-------~~Iy  222 (391)
T KOG2110|consen  153 GDVVLFDTINLQPVNTIN--AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY-P-------VSIY  222 (391)
T ss_pred             ceEEEEEcccceeeeEEE--ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce-e-------eEEE
Confidence            899999999999999887  89999999999999999999999998 89999999999998883333 2       3334


Q ss_pred             EEEEeCCCCCEEEEEeCCCcEEEEeecCCC
Q 001295         1044 VIAAHPQEPNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus      1044 ~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
                      +++|+| |+++|.+.+..++|+++.+++..
T Consensus       223 SL~Fs~-ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  223 SLSFSP-DSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             EEEECC-CCCeEEEecCCCeEEEEEecccc
Confidence            999999 78999999999999999998876

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=3.7e-16  Score=155.54  Aligned_cols=172  Identities=16%  Similarity=0.237  Sum_probs=129.0

Q ss_pred             eeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCC------CCceeEEEec-cCCCeEEEeccccCCceEEEEEecC
Q 001295          452 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT------NGAKQYIFEG-HEAPVYSVCPHHKENIQFIFSTALD  524 (1106)
Q Consensus       452 ~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~------~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~d  524 (1106)
                      .+.+|.+.|+++.|+.+++  +|++|+.|..+++|++.      +.+++..... |...|.|++|...  ...+++|+.+
T Consensus        51 D~~~H~GCiNAlqFS~N~~--~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~--N~~~~SG~~~  126 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDR--FLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLE--NRFLYSGERW  126 (609)
T ss_pred             hhhhhccccceeeeccCCe--EEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccC--CeeEecCCCc
Confidence            4678999999999999998  89999999999999986      3466665544 4588999998533  3789999999


Q ss_pred             CeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcc-eeEE
Q 001295          525 GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-LLTS  603 (1106)
Q Consensus       525 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~  603 (1106)
                      ++|...|+++.+.+..+.....                   .+.+..+..+|..+.|++.+.++.|.+||.+... .+..
T Consensus       127 ~~VI~HDiEt~qsi~V~~~~~~-------------------~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~  187 (609)
T KOG4227|consen  127 GTVIKHDIETKQSIYVANENNN-------------------RGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISL  187 (609)
T ss_pred             ceeEeeecccceeeeeecccCc-------------------ccceeecccCCCCceEEEEecCceEEEEeccCCCCCCce
Confidence            9999999998766554433221                   1244455566666789999999999999998755 3333


Q ss_pred             EccCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEccCCchhh
Q 001295          604 IDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLL  646 (1106)
Q Consensus       604 ~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~  646 (1106)
                      +..........++.|+| ...+|++.+..+.+-+||.+.....+
T Consensus       188 ~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~  231 (609)
T KOG4227|consen  188 VLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPV  231 (609)
T ss_pred             eeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchH
Confidence            32222234567899999 56778888889999999987664433

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.74  E-value=1.9e-15  Score=166.83  Aligned_cols=252  Identities=11%  Similarity=0.101  Sum_probs=164.9

Q ss_pred             CCCeeEEEEecCCCEEEEEe--CCeEEEEEcC-CCce--eeeecCCCCCeeEEEEecCCCceEEEee-CCCcEEEEEeec
Q 001295          810 EEAVPCFALSKNDSYVMSAS--GGKISLFNMM-TFKT--MATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRV  883 (1106)
Q Consensus       810 ~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~-~~~~--~~~~~~~~~~v~~l~~s~~d~~~la~g~-~dg~v~iwd~~~  883 (1106)
                      ......++++|++++|++++  ++.|.+|++. +++.  ..... .......++|+| ++++|++++ .++.|.+|++.+
T Consensus        34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~-~g~~l~v~~~~~~~v~v~~~~~  111 (330)
T PRK11028         34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDH-QGRFLFSASYNANCVSVSPLDK  111 (330)
T ss_pred             CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECC-CCCEEEEEEcCCCeEEEEEECC
Confidence            34567789999999988775  6889999997 3332  22222 233567899999 777776665 488999999974


Q ss_pred             -c---eEEEEecCcccCeeEEEEecCCCEEEE-EcCCCcEEEEeCCCcccccc---eeecccCCCCCCCCCCceEEEcCC
Q 001295          884 -D---EVKSKLKGHSKRITGLAFSHALNVLVS-SGADSQLCVWSSDGWEKQKN---RFLQIPTGRTPTAQSDTRVQFHQD  955 (1106)
Q Consensus       884 -~---~~~~~l~~h~~~V~~l~~s~d~~~l~s-~s~Dg~i~vwd~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~s~d  955 (1106)
                       +   +.+..+.+ .....+++++|+++++++ ...++.|.+||+.+......   .......+     .....++|+||
T Consensus       112 ~g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g-----~~p~~~~~~pd  185 (330)
T PRK11028        112 DGIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEG-----AGPRHMVFHPN  185 (330)
T ss_pred             CCCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCC-----CCCceEEECCC
Confidence             3   22333332 234677899999998855 45669999999986332110   11112222     34678999999


Q ss_pred             CcEEEEE--eCCeEEEEecCC--c--eEeeecccC----CCCCCeeEEEECCCCCEEEEEEc-CCeEEEEEcCCceeEEe
Q 001295          956 QIHFLVV--HETQLAIFETTK--L--ECVKQWVPR----ESSAPITHATFSCDSQLVYACFL-DATVCVFSAANLKLRCR 1024 (1106)
Q Consensus       956 g~~l~~~--~d~~v~i~d~~~--~--~~~~~~~~~----~h~~~v~~l~~s~d~~~l~t~s~-Dg~i~vwd~~~~~~~~~ 1024 (1106)
                      |++++++  .++.|.+|++..  +  +.+..+...    .+......+.|+||+++|+++.. +++|.+|+++.......
T Consensus       186 g~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~  265 (330)
T PRK11028        186 QQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLS  265 (330)
T ss_pred             CCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEE
Confidence            9999885  478999999973  2  233332210    11223446899999999998864 68999999964331111


Q ss_pred             eCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeC-CCcEEEEeecCCCCccC
Q 001295         1025 INPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS-DGGVHVFEPLESEGKWG 1077 (1106)
Q Consensus      1025 ~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~-Dg~v~vW~~~~~~~~~~ 1077 (1106)
                      +.  ...+.+     ..|..+.++| ||++|+++.. +++|.+|+++...+.+.
T Consensus       266 ~~--~~~~~~-----~~p~~~~~~~-dg~~l~va~~~~~~v~v~~~~~~~g~l~  311 (330)
T PRK11028        266 FE--GHQPTE-----TQPRGFNIDH-SGKYLIAAGQKSHHISVYEIDGETGLLT  311 (330)
T ss_pred             Ee--EEEecc-----ccCCceEECC-CCCEEEEEEccCCcEEEEEEcCCCCcEE
Confidence            11  011111     2233689999 6888877664 89999999875443343

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.74  E-value=2.1e-17  Score=173.39  Aligned_cols=229  Identities=16%  Similarity=0.280  Sum_probs=180.5

Q ss_pred             ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEcc-----CCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCC
Q 001295          407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYH-----GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK  481 (1106)
Q Consensus       407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~-----~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~  481 (1106)
                      ++..|.+.|+.++|.|....|++++.||++++|++.     ....+.++.+|.+|.++|.|+++.++++  .+++||.||
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg  366 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDG  366 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCc
Confidence            578899999999999999999999999999999993     3345678889999999999999999999  899999999


Q ss_pred             cEEEEeCCC------C----ceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCC--CeeE
Q 001295          482 TIKVWDATN------G----AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG--RWCT  549 (1106)
Q Consensus       482 ~i~iwd~~~------~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~v~  549 (1106)
                      +|+.|++..      .    .....+.||.+.|+.++++...  ..|++++.||+++.|+...... ..+....  +...
T Consensus       367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl  443 (577)
T KOG0642|consen  367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL  443 (577)
T ss_pred             eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence            999996541      1    2335788999999999998776  4699999999999998876544 2222111  1112


Q ss_pred             EEEEecCCC-----------------------eEEEe------eeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcce
Q 001295          550 TMAYSADGT-----------------------RTYQG------FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL  600 (1106)
Q Consensus       550 ~~~~s~~~~-----------------------~~~~~------~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  600 (1106)
                      ++.+.....                       .++..      .....+..+.++|...+.+++.+|+.|+++|..+++.
T Consensus       444 svd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~  523 (577)
T KOG0642|consen  444 SVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKI  523 (577)
T ss_pred             eEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccccc
Confidence            222211110                       11111      1123566788899999999999999999999999999


Q ss_pred             eEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295          601 LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       601 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                      +.....|  ...++++++.|+|.+|++++.|+.+++|.+...
T Consensus       524 l~s~~a~--~~svtslai~~ng~~l~s~s~d~sv~l~kld~k  563 (577)
T KOG0642|consen  524 LHSMVAH--KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK  563 (577)
T ss_pred             chheeec--cceecceeecCCCceEEeecCCceeehhhccch
Confidence            9888766  457999999999999999999999999987654

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=1.9e-15  Score=163.74  Aligned_cols=607  Identities=11%  Similarity=0.089  Sum_probs=341.4

Q ss_pred             CCCCCCCCcceeeecc-CCCCcEEEEEecC-----------CCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCC
Q 001295          333 FSTPEDLPKTVTRTLN-QGSSPMSMDFHPV-----------QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACS  400 (1106)
Q Consensus       333 ~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~-----------g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~  400 (1106)
                      +...|....+..+.+. |...|+.+.|.|-           ...+||++...|.|.|||...+..+..            
T Consensus        37 V~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~------------  104 (1062)
T KOG1912|consen   37 VSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINW------------  104 (1062)
T ss_pred             EEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhh------------
Confidence            3344566667777777 8899999999873           334788888899999999988776652            


Q ss_pred             ccccccccCCCCcCeEEEEEcc---CC-CEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEE
Q 001295          401 MPLQAALVKDPGVSVNRVIWSP---DG-SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVIT  476 (1106)
Q Consensus       401 ~~~~~~~~~~h~~~V~~l~~sp---dg-~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s  476 (1106)
                             +..|..+|..++|-+   +. ..|++-....+|.+|+..+|+.+-   ....-.....|+.+.|-+.. .+..
T Consensus       105 -------l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~W---k~~ys~~iLs~f~~DPfd~r-h~~~  173 (1062)
T KOG1912|consen  105 -------LSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFW---KYDYSHEILSCFRVDPFDSR-HFCV  173 (1062)
T ss_pred             -------hcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceee---ccccCCcceeeeeeCCCCcc-eEEE
Confidence                   678889999999987   34 456666777899999999998664   23333456677888886655 3433


Q ss_pred             ecCCCcEEEEeCC-------CCceeEEEeccCC----------------C-------eEEE--eccccCCceEEEEEecC
Q 001295          477 CGDDKTIKVWDAT-------NGAKQYIFEGHEA----------------P-------VYSV--CPHHKENIQFIFSTALD  524 (1106)
Q Consensus       477 ~~~d~~i~iwd~~-------~~~~~~~~~~h~~----------------~-------v~~~--~~~~~~~~~~l~s~~~d  524 (1106)
                      -+..|.+.+-+.-       .|+..+.-..|..                .       ..+.  +|+|..  +-++-....
T Consensus       174 l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~--rn~lfi~~p  251 (1062)
T KOG1912|consen  174 LGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHW--RNILFITFP  251 (1062)
T ss_pred             EccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhh--hceEEEEec
Confidence            3445555555432       1333333333322                0       0111  233333  233444456


Q ss_pred             CeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCC-------
Q 001295          525 GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-------  597 (1106)
Q Consensus       525 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~-------  597 (1106)
                      ..+.++|++-...+.....+.+.+.-+.+-|++++                   ..|++.-.||.+.+|-.+.       
T Consensus       252 rellv~dle~~~~l~vvpier~~akfv~vlP~~~r-------------------d~LfclH~nG~ltirvrk~~~~~f~~  312 (1062)
T KOG1912|consen  252 RELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRR-------------------DALFCLHSNGRLTIRVRKEEPTEFKK  312 (1062)
T ss_pred             cceEEEcchhhceeEEEEeccCCcceeEeccCCCc-------------------ceEEEEecCCeEEEEEeeccCccccc
Confidence            77889998877777666666666666666676653                   3588888999999997654       


Q ss_pred             ---------cceeEEEccCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccC--------
Q 001295          598 ---------VQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT--------  659 (1106)
Q Consensus       598 ---------~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--------  659 (1106)
                               ++....+..-+...++ .....| +...++.-..+|...+|.+.++........+........        
T Consensus       313 ~~~~l~~dl~~Q~~~vr~m~~~rp~-~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~  391 (1062)
T KOG1912|consen  313 PNASLSMDLGEQVHVVRPMEEFRPV-IGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKL  391 (1062)
T ss_pred             cchhhccccccceEEEeechhcccc-eeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceee
Confidence                     2222222221211122 222333 245555556678888998886621111111011000000        


Q ss_pred             -CCCCCCCcCchhhhHhhhhccccccccccccccc--CCCCCCccc-cCCCCccccccCCCceeeEecCCCCCCccceec
Q 001295          660 -SENSKPTISPISAAAAAAATSAGLADRAASMVSI--PGMNGDVRS-LADVKPRITEESNDKSKVWKLTELSEPNQCRSL  735 (1106)
Q Consensus       660 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~  735 (1106)
                       .......++.++.-     .....+.+..|+...  ..-.+.... ...-..++.|...|+|.++|+........+.  
T Consensus       392 v~k~~l~~LS~dg~h-----~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fs--  464 (1062)
T KOG1912|consen  392 VGKTSLISLSDDGSH-----SSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFS--  464 (1062)
T ss_pred             hhhccccchhhcCCC-----CCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhc--
Confidence             00000011111100     000001111111111  110111111 1123456889999999999998755443332  


Q ss_pred             ccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeE
Q 001295          736 RLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC  815 (1106)
Q Consensus       736 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~  815 (1106)
                           .|...|.++.|..+.+.+-.+.+. .            .+........+.+-|+.+|.-....-.......+|+.
T Consensus       465 -----vht~~VkgleW~g~sslvSfsys~-~------------n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~  526 (1062)
T KOG1912|consen  465 -----VHTSLVKGLEWLGNSSLVSFSYSH-V------------NSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRA  526 (1062)
T ss_pred             -----ccccceeeeeeccceeEEEeeecc-c------------cccccceeeeEEEEEcccccccccccCCCCCcCccee
Confidence                 388899999998887744333321 0            0001111123445666677644332112246789999


Q ss_pred             EEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCC----------------ceEEEeeCCCcEEE
Q 001295          816 FALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDN----------------NIIAIGMDDSSIQI  878 (1106)
Q Consensus       816 l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~----------------~~la~g~~dg~v~i  878 (1106)
                      +..|.-++|++..- +.-+.+||+++..+++.....-.-|+.++|+-..-                +..+..+  +..++
T Consensus       527 irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q~sms~n~vv~ds--~es~~  604 (1062)
T KOG1912|consen  527 IRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQSSMSENLVVLDS--VESRI  604 (1062)
T ss_pred             eeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeecccCCCCcccccchhhhhhhhceeeecc--ccchh
Confidence            99999999999998 88899999998887776654444588999982121                1233333  22333


Q ss_pred             EEee-c------ceE-EEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceE
Q 001295          879 YNVR-V------DEV-KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRV  950 (1106)
Q Consensus       879 wd~~-~------~~~-~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~  950 (1106)
                      +.+. .      +.. ....+.....+..++|-  +..|+.|+.+|.+.+||+.......  ...    ...........
T Consensus       605 ~~~~~~a~~~sdgsq~~~a~esfafal~~mAwk--~d~lv~GD~~GNl~~WDlg~R~SRg--~~d----~p~~ra~~l~~  676 (1062)
T KOG1912|consen  605 YHITLSALVVSDGSQVNTAWESFAFALCAMAWK--DDILVVGDVEGNLVVWDLGRRQSRG--VRD----SPDPRAHSLTF  676 (1062)
T ss_pred             eehhhhhhhhccccchhhHHHHHHHHHHhhhcc--CCeeEeecccCceeEEecccccccC--ccC----CCCchhhheec
Confidence            3322 1      111 11111112234446774  6799999999999999986532111  011    11111122334


Q ss_pred             EEcCCCcEEEEEeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCcee
Q 001295          951 QFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL 1021 (1106)
Q Consensus       951 ~~s~dg~~l~~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~ 1021 (1106)
                      .+-|....+++-....+.+||.+....+..+.....+-.+..+.+......++.  .|.++|+--+.....
T Consensus       677 ~~ipG~~~~lvl~~d~~~lwdtk~~~lV~siag~dssfrlldvdlc~~~~~~l~--~d~~~Rf~~m~mks~  745 (1062)
T KOG1912|consen  677 PQIPGDHTTLVLELDWLPLWDTKADTLVLSIAGMDSSFRLLDVDLCEKSPLVLP--NDNKERFRVMPMKSP  745 (1062)
T ss_pred             ccCCCCceEEEEecCcceecccccceeeeeeccCCcceEEEEEEecccCceecC--CCCceeEEeccccCC
Confidence            445554455555666788999988888777742222445556666554444442  344888776665443

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.73  E-value=6e-18  Score=184.21  Aligned_cols=244  Identities=17%  Similarity=0.299  Sum_probs=187.1

Q ss_pred             ceeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEc
Q 001295          342 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  421 (1106)
Q Consensus       342 ~~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s  421 (1106)
                      .+..+++|...|.|++|...|+| +++|+.|..|+||..+++.++..                   ..||++.|+.++.+
T Consensus       182 ~ikrLlgH~naVyca~fDrtg~~-Iitgsdd~lvKiwS~et~~~lAs-------------------~rGhs~ditdlavs  241 (1113)
T KOG0644|consen  182 NIKRLLGHRNAVYCAIFDRTGRY-IITGSDDRLVKIWSMETARCLAS-------------------CRGHSGDITDLAVS  241 (1113)
T ss_pred             HHHHHHhhhhheeeeeeccccce-EeecCccceeeeeeccchhhhcc-------------------CCCCccccchhccc
Confidence            35566789999999999999997 99999999999999999998874                   79999999999999


Q ss_pred             cCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEE---Ee
Q 001295          422 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI---FE  498 (1106)
Q Consensus       422 pdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~---~~  498 (1106)
                      .+..++|+++.|..|++|.+.++..+.   .+.||++.|++++|+|-      .+.+.||++++||.+-.-.+..   +.
T Consensus       242 ~~n~~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~~  312 (1113)
T KOG0644|consen  242 SNNTMIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPLK  312 (1113)
T ss_pred             hhhhhhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCCC
Confidence            999999999999999999999998776   68999999999999984      4788999999999871111111   11


Q ss_pred             c-cCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCC
Q 001295          499 G-HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT  577 (1106)
Q Consensus       499 ~-h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~  577 (1106)
                      . ....+.++.|  ..++..+.||+.|+.-..|.+.-...      +...+.-+..+.+.                    
T Consensus       313 ~~~~~~~~s~~~--~~~~~~f~Tgs~d~ea~n~e~~~l~~------~~~~lif~t~ssd~--------------------  364 (1113)
T KOG0644|consen  313 FTEKDLVDSILF--ENNGDRFLTGSRDGEARNHEFEQLAW------RSNLLIFVTRSSDL--------------------  364 (1113)
T ss_pred             cccccceeeeec--cccccccccccCCcccccchhhHhhh------hccceEEEeccccc--------------------
Confidence            1 1233444444  34556799999999988886542111      00001111111111                    


Q ss_pred             CCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEccCCch
Q 001295          578 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIR  644 (1106)
Q Consensus       578 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~~  644 (1106)
                      ..+.+++-.+-.+++|++.+|.+.+.+.++.+  .+..+.++| +.....+++.||...|||+..|..
T Consensus       365 ~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd--~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~p  430 (1113)
T KOG0644|consen  365 SSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD--EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIP  430 (1113)
T ss_pred             cccceeeeeeeEeeeeecccchhhhhhccccc--ceeeeeecCCCcHhhhhccCCCceEeeecccCCc
Confidence            12466677788999999999999999988755  677799999 666777899999999999988843

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=2e-16  Score=157.37  Aligned_cols=263  Identities=11%  Similarity=0.090  Sum_probs=178.8

Q ss_pred             eeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEE-eeeeeeccCcCCccccccccCCCCcCeEEEEEccC
Q 001295          345 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL-RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  423 (1106)
Q Consensus       345 ~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd  423 (1106)
                      -+++|.+-|+++.||.++++ ||+|+.|..+++|+++..-.... +++.+             .-..|...|.|++|...
T Consensus        51 D~~~H~GCiNAlqFS~N~~~-L~SGGDD~~~~~W~~de~~~~k~~KPI~~-------------~~~~H~SNIF~L~F~~~  116 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRF-LASGGDDMHGRVWNVDELMVRKTPKPIGV-------------MEHPHRSNIFSLEFDLE  116 (609)
T ss_pred             hhhhhccccceeeeccCCeE-EeecCCcceeeeechHHHHhhcCCCCcee-------------ccCccccceEEEEEccC
Confidence            35679999999999999995 99999999999999865322221 11111             12456689999999999


Q ss_pred             CCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCc-ee--EEEecc
Q 001295          424 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQ--YIFEGH  500 (1106)
Q Consensus       424 g~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~--~~~~~h  500 (1106)
                      .++|.+|+.+++|...|+++.+.+... .-....+.|+.+..+|-..  .|++.+.++.|.+||.+... .+  .-+...
T Consensus       117 N~~~~SG~~~~~VI~HDiEt~qsi~V~-~~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~  193 (609)
T KOG4227|consen  117 NRFLYSGERWGTVIKHDIETKQSIYVA-NENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVLPANS  193 (609)
T ss_pred             CeeEecCCCcceeEeeecccceeeeee-cccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceeeecCC
Confidence            999999999999999999997765421 1122334899999999977  79999999999999988644 22  222223


Q ss_pred             CCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCcee-EeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCC
Q 001295          501 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN  579 (1106)
Q Consensus       501 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~  579 (1106)
                      ......+.|+|... .+|++.+..+-+.+||.+...... .+....+ .      |.        .....-.+.|+|+|+
T Consensus       194 ~~~F~t~~F~P~~P-~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~-L------~~--------~~~~~M~~~~~~~G~  257 (609)
T KOG4227|consen  194 GKNFYTAEFHPETP-ALILVNSETGGPNVFDRRMQARPVYQRSMFKG-L------PQ--------ENTEWMGSLWSPSGN  257 (609)
T ss_pred             CccceeeeecCCCc-eeEEeccccCCCCceeeccccchHHhhhcccc-C------cc--------cchhhhheeeCCCCC
Confidence            44566777877654 688999999999999998644322 1111000 0      00        000122345666666


Q ss_pred             EEEEEECCCeEEEEECCCcce-eEEEccC----CCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccC
Q 001295          580 RFLAAGDDFSIKFWDMDSVQL-LTSIDAD----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD  641 (1106)
Q Consensus       580 ~l~~~~~d~~i~iwd~~~~~~-~~~~~~~----~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~  641 (1106)
                      +|++.-....-.+||+.+.++ +..+...    -....+.+++|..|- .+++|+.+=.|++|.+..
T Consensus       258 Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~  323 (609)
T KOG4227|consen  258 QFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPR  323 (609)
T ss_pred             eehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCC
Confidence            777766666666777766433 2233211    112346678887654 489999999999998754

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.73  E-value=5.2e-16  Score=173.69  Aligned_cols=321  Identities=16%  Similarity=0.237  Sum_probs=219.4

Q ss_pred             CCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEecc---CCCeEEEec
Q 001295          433 RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH---EAPVYSVCP  509 (1106)
Q Consensus       433 d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h---~~~v~~~~~  509 (1106)
                      +..|..||...         ..+...+-..+.|+|-..  .++++++.-.|+|||.+.++.+..|..+   ...|+.+++
T Consensus      1049 t~~i~~W~~~~---------~~~n~~~pk~~~~hpf~p--~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~l 1117 (1387)
T KOG1517|consen 1049 TNPIGNWDQKF---------MTGNNQPPKTLKFHPFEP--QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLEL 1117 (1387)
T ss_pred             cccccchHHHH---------HhcCCCCCceeeecCCCc--eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeee
Confidence            34466777542         223334566788888888  6888887789999999999998888654   356888888


Q ss_pred             cccCCceEEEEEecCCeEEEEeCCCCC-ceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCC
Q 001295          510 HHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF  588 (1106)
Q Consensus       510 ~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  588 (1106)
                      -...|..++++|+.||.|++|+--... ...++...-..+.++...+.|.         . ..++|.....+|+++|+-.
T Consensus      1118 iNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~---------~-~v~dWqQ~~G~Ll~tGd~r 1187 (1387)
T KOG1517|consen 1118 INEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGT---------G-LVVDWQQQSGHLLVTGDVR 1187 (1387)
T ss_pred             ecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCC---------C-eeeehhhhCCeEEecCCee
Confidence            777788899999999999999643221 2222211111222222222222         2 5577887777888888899


Q ss_pred             eEEEEECCCcceeEEEccCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCc
Q 001295          589 SIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTI  667 (1106)
Q Consensus       589 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  667 (1106)
                      .|+|||+.....+..+..... ..++++.-+- .|+.+++|..||.|++||.+.....                      
T Consensus      1188 ~IRIWDa~~E~~~~diP~~s~-t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d---------------------- 1244 (1387)
T KOG1517|consen 1188 SIRIWDAHKEQVVADIPYGSS-TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD---------------------- 1244 (1387)
T ss_pred             EEEEEecccceeEeecccCCC-ccceeecccccCCceEEEeecCCceEEeecccCCcc----------------------
Confidence            999999998888877765433 3455555443 5799999999999999998754110                      


Q ss_pred             CchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccc--
Q 001295          668 SPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK--  745 (1106)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~--  745 (1106)
                                                                      ..|.+|.                  .|+..  
T Consensus      1245 ------------------------------------------------s~v~~~R------------------~h~~~~~ 1258 (1387)
T KOG1517|consen 1245 ------------------------------------------------SLVCVYR------------------EHNDVEP 1258 (1387)
T ss_pred             ------------------------------------------------ccceeec------------------ccCCccc
Confidence                                                            1122221                  13333  


Q ss_pred             eEEEEEcCCCce-EEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCE
Q 001295          746 ISRLIFTNSGNA-ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY  824 (1106)
Q Consensus       746 i~~~~~s~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~  824 (1106)
                      |..+.+-++|-. +++++.+|.|++||++.....                   ........ ...++..+++..+++...
T Consensus      1259 Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e-------------------~~~~iv~~-~~yGs~lTal~VH~hapi 1318 (1387)
T KOG1517|consen 1259 IVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKE-------------------TFLTIVAH-WEYGSALTALTVHEHAPI 1318 (1387)
T ss_pred             ceeEEeecCCCcceeeeccCCeEEEEecccCccc-------------------ccceeeec-cccCccceeeeeccCCCe
Confidence            788888776554 999999999999998753110                   00110000 001335899999999999


Q ss_pred             EEEEeCCeEEEEEcCCCceeeeecC-------CCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecce
Q 001295          825 VMSASGGKISLFNMMTFKTMATFMP-------PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE  885 (1106)
Q Consensus       825 l~~~sdg~i~vwd~~~~~~~~~~~~-------~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~  885 (1106)
                      +|+|+.+.|+||++... .+..++.       ..+.+.|++|+| -.-++|+|+.|.+|.||.....+
T Consensus      1319 iAsGs~q~ikIy~~~G~-~l~~~k~n~~F~~q~~gs~scL~FHP-~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1319 IASGSAQLIKIYSLSGE-QLNIIKYNPGFMGQRIGSVSCLAFHP-HRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             eeecCcceEEEEecChh-hhcccccCcccccCcCCCcceeeecc-hhHhhhhccCCceEEEeecCCcC
Confidence            99999999999998753 3333322       245689999999 78899999999999999876543

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.72  E-value=1.2e-16  Score=151.32  Aligned_cols=304  Identities=11%  Similarity=0.141  Sum_probs=198.2

Q ss_pred             eeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEe-ccCCCeEEEeccccCCceEEEEEecCCeE
Q 001295          449 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKI  527 (1106)
Q Consensus       449 ~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i  527 (1106)
                      +.+.+++|.+.|+++.|-.+++   |.+|..-|.|++|++.+.+.+..++ .|...|+.+...+.   ..+.+-+.|+.+
T Consensus         6 P~fvLRp~~~~v~s~~fqa~~r---L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~---d~l~tqgRd~~L   79 (323)
T KOG0322|consen    6 PFFVLRPHSSSVTSVLFQANER---LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN---DSLDTQGRDPLL   79 (323)
T ss_pred             CeeEeccccchheehhhccchh---hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC---cchhhcCCCceE
Confidence            3456889999999999988775   8999999999999999999888888 56778888875433   469999999999


Q ss_pred             EEEeCCCCCceeEeeCCCCeeEEEEEec-----CCCeEEEeeeccceeEEEEcCCCCEEEEEECC-CeEEEEECCCccee
Q 001295          528 KAWLYDNLGSRVDYEAPGRWCTTMAYSA-----DGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD-FSIKFWDMDSVQLL  601 (1106)
Q Consensus       528 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~  601 (1106)
                      .+|++.-...+..   +.-.+.++.|.+     .++.         .        ...++.-++. ..+.+-|......+
T Consensus        80 ~lw~ia~s~~i~i---~Si~~nslgFCrfSl~~~~k~---------~--------eqll~yp~rgsde~h~~D~g~~tqv  139 (323)
T KOG0322|consen   80 ILWTIAYSAFISI---HSIVVNSLGFCRFSLVKKPKN---------S--------EQLLEYPSRGSDETHKQDGGDTTQV  139 (323)
T ss_pred             EEEEccCcceEEE---eeeeccccccccceeccCCCc---------c--------hhheecCCcccchhhhhccCcccee
Confidence            9999876333221   112233333322     2210         0        0011111100 00222222222222


Q ss_pred             EEEcc--CCCCCCcCeEEEcc-CC--CEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhh
Q 001295          602 TSIDA--DGGLPASPRIRFNK-DG--CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAA  676 (1106)
Q Consensus       602 ~~~~~--~~~~~~v~~v~~s~-~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  676 (1106)
                      ...+.  ....+.+.+..+.. ++  -++++|..+|.+.+||+.++...+. +...                        
T Consensus       140 ~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~-~~~~------------------------  194 (323)
T KOG0322|consen  140 QIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQ-LPQS------------------------  194 (323)
T ss_pred             EccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeec-cccc------------------------
Confidence            22211  11123344444322 22  3566788899999999988722221 1110                        


Q ss_pred             hhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCc
Q 001295          677 AATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGN  756 (1106)
Q Consensus       677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  756 (1106)
                                                                  |.            ...+...|..+|.++.|.+...
T Consensus       195 --------------------------------------------~k------------v~~~~ash~qpvlsldyas~~~  218 (323)
T KOG0322|consen  195 --------------------------------------------SK------------VESPNASHKQPVLSLDYASSCD  218 (323)
T ss_pred             --------------------------------------------cc------------cccchhhccCcceeeeechhhc
Confidence                                                        00            0011133788899999988766


Q ss_pred             eEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEE
Q 001295          757 AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISL  835 (1106)
Q Consensus       757 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~v  835 (1106)
                      .=++++.+..+..|.++....+..               -+....  +    ..-.|..+.+-||++.+|+++ |+.|||
T Consensus       219 rGisgga~dkl~~~Sl~~s~gslq---------------~~~e~~--l----knpGv~gvrIRpD~KIlATAGWD~RiRV  277 (323)
T KOG0322|consen  219 RGISGGADDKLVMYSLNHSTGSLQ---------------IRKEIT--L----KNPGVSGVRIRPDGKILATAGWDHRIRV  277 (323)
T ss_pred             CCcCCCccccceeeeeccccCccc---------------ccceEE--e----cCCCccceEEccCCcEEeecccCCcEEE
Confidence            667777777788887763211100               001111  1    234577888999999999999 999999


Q ss_pred             EEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEe
Q 001295          836 FNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV  881 (1106)
Q Consensus       836 wd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~  881 (1106)
                      |+.++...+..+..|...|.+++|+| +..++|.++.|++|.+|++
T Consensus       278 yswrtl~pLAVLkyHsagvn~vAfsp-d~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  278 YSWRTLNPLAVLKYHSAGVNAVAFSP-DCELMAAASKDARISLWKL  322 (323)
T ss_pred             EEeccCCchhhhhhhhcceeEEEeCC-CCchhhhccCCceEEeeec
Confidence            99999999999999999999999999 8889999999999999986

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.71  E-value=3.4e-16  Score=150.11  Aligned_cols=228  Identities=18%  Similarity=0.263  Sum_probs=165.9

Q ss_pred             CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc--CCCE
Q 001295          349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGSL  426 (1106)
Q Consensus       349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~  426 (1106)
                      +-+.|.|+.|.|++.. +|+- .|..|.+|+++.+..+. .++.            ...-.+|....++-+|||  ||..
T Consensus       122 avg~i~cvew~Pns~k-lasm-~dn~i~l~~l~ess~~v-aev~------------ss~s~e~~~~ftsg~WspHHdgnq  186 (370)
T KOG1007|consen  122 AVGKINCVEWEPNSDK-LASM-DDNNIVLWSLDESSKIV-AEVL------------SSESAEMRHSFTSGAWSPHHDGNQ  186 (370)
T ss_pred             HhCceeeEEEcCCCCe-eEEe-ccCceEEEEcccCcchh-eeec------------ccccccccceecccccCCCCccce
Confidence            5569999999999997 5443 38999999999877642 1111            001234667788889999  8999


Q ss_pred             EEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCC-CceeEEEeccCCCeE
Q 001295          427 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-GAKQYIFEGHEAPVY  505 (1106)
Q Consensus       427 las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~h~~~v~  505 (1106)
                      +++. .|+++..||+++.++...+  -.+|...|..+.|+|+-+. +|+||++||.|+|||.+. ..+++++.+|...|+
T Consensus       187 v~tt-~d~tl~~~D~RT~~~~~sI--~dAHgq~vrdlDfNpnkq~-~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW  262 (370)
T KOG1007|consen  187 VATT-SDSTLQFWDLRTMKKNNSI--EDAHGQRVRDLDFNPNKQH-ILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVW  262 (370)
T ss_pred             EEEe-CCCcEEEEEccchhhhcch--hhhhcceeeeccCCCCceE-EEEEcCCCccEEEEeccCCCccccccCCCceEEE
Confidence            8877 4889999999987655432  3478899999999999887 899999999999999984 567899999999999


Q ss_pred             EEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCC--C------CeeEEEEEecCCCeEEEeeeccceeEEEEcCC
Q 001295          506 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP--G------RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT  577 (1106)
Q Consensus       506 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~------~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~  577 (1106)
                      ++.|++..+ +++++|+.|..|.+|....-.....+...  .      ........-+||.......+...+.+++|+.-
T Consensus       263 ~VRfn~~hd-qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsa  341 (370)
T KOG1007|consen  263 AVRFNPEHD-QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSA  341 (370)
T ss_pred             EEEecCccc-eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccC
Confidence            999998776 89999999999999977543321111110  0      01111223344443333444557788888887


Q ss_pred             CCEEEE-EECCCeEEEEECC
Q 001295          578 KNRFLA-AGDDFSIKFWDMD  596 (1106)
Q Consensus       578 ~~~l~~-~~~d~~i~iwd~~  596 (1106)
                      ..++++ -+.||.+.|=.+.
T Consensus       342 dPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  342 DPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             CCeeEEEeccCceEEeecCC
Confidence            777655 6889998876553

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.71  E-value=1.3e-15  Score=169.99  Aligned_cols=262  Identities=20%  Similarity=0.262  Sum_probs=192.7

Q ss_pred             eeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc
Q 001295          343 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  422 (1106)
Q Consensus       343 ~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp  422 (1106)
                      ....+.-...|.|++|+|....++|.|..+|.|.+||+..+......             ........|..+|+.+.|-.
T Consensus       235 Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s-------------~ls~~~~sh~~~v~~vvW~~  301 (555)
T KOG1587|consen  235 PELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPS-------------GLSALEVSHSEPVTAVVWLQ  301 (555)
T ss_pred             ceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCc-------------ccccccccCCcCeEEEEEec
Confidence            34556678999999999999989999999999999999877652110             01113578999999999987


Q ss_pred             CC--CEEEEEeCCCeEEEEEccCCceeeeeeeec---------cccCCeeEEEEcCCCCceEEEEecCCCcEEEEe---C
Q 001295          423 DG--SLFGVAYSRHIVQIYSYHGGDEVRQHLEID---------AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD---A  488 (1106)
Q Consensus       423 dg--~~las~~~d~~v~iwd~~~~~~~~~~~~l~---------~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd---~  488 (1106)
                      +-  .-+++++.||.|..|+++.-........+.         .-...+++++|.+.... .++.|+++|.|.-=+   .
T Consensus       302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe~G~v~~~~r~g~  380 (555)
T KOG1587|consen  302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTEEGKVYKGCRKGY  380 (555)
T ss_pred             cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcCCcEEEEEeccCC
Confidence            54  449999999999999887433211110111         12346899999998877 799999999997733   2


Q ss_pred             CCCc-----eeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCC-CCCceeEeeCCCCeeEEEEEecCCCeEEE
Q 001295          489 TNGA-----KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD-NLGSRVDYEAPGRWCTTMAYSADGTRTYQ  562 (1106)
Q Consensus       489 ~~~~-----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~~~~~~~  562 (1106)
                      ..+.     .+..+..|.++|.++.++|-.. ..+.+++ |.++++|... ...++..+..+...+.+++|||...    
T Consensus       381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrp----  454 (555)
T KOG1587|consen  381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRP----  454 (555)
T ss_pred             cccccccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCc----
Confidence            2222     2335667899999999887665 3455555 9999999887 5566666776777788888888664    


Q ss_pred             eeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcc--eeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEcc
Q 001295          563 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ--LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS  640 (1106)
Q Consensus       563 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~  640 (1106)
                                      ..|+++..||.|.+||+....  ++.+....  ....+.+.|+++|+.|++|...|.+.+|++.
T Consensus       455 ----------------avF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  455 ----------------AVFATVDGDGNLDIWDLLQDDEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLS  516 (555)
T ss_pred             ----------------eEEEEEcCCCceehhhhhccccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence                            247888899999999986544  33333333  3456778899999999999999999999986


Q ss_pred             CC
Q 001295          641 DG  642 (1106)
Q Consensus       641 ~~  642 (1106)
                      ..
T Consensus       517 ~~  518 (555)
T KOG1587|consen  517 ES  518 (555)
T ss_pred             ch
Confidence            43

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=1.8e-16  Score=163.17  Aligned_cols=322  Identities=16%  Similarity=0.210  Sum_probs=231.1

Q ss_pred             eeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEE-eccCCCeEEEeccccCCceEEEEEecCCeEEEE
Q 001295          452 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW  530 (1106)
Q Consensus       452 ~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw  530 (1106)
                      .|.+|.+.|..|.|+..|.  .+++|+.|..|.+||+.+++....+ .||...|....|.|..+...+++++.||.+++=
T Consensus       137 kL~~H~GcVntV~FN~~Gd--~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s  214 (559)
T KOG1334|consen  137 KLNKHKGCVNTVHFNQRGD--VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS  214 (559)
T ss_pred             cccCCCCccceeeecccCc--eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence            5889999999999999999  8999999999999999998887766 468888888888888887899999999999988


Q ss_pred             eCCCCCcee---EeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccC
Q 001295          531 LYDNLGSRV---DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD  607 (1106)
Q Consensus       531 d~~~~~~~~---~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  607 (1106)
                      .+...+...   .+..|.+.|..++.-|+..                    .-|.++++|+.+.-+|++.+.....+...
T Consensus       215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp--------------------~~f~S~geD~~v~~~Dlr~~~pa~~~~cr  274 (559)
T KOG1334|consen  215 EILETGYVENTKRLAPHEGPVHKLAVEPDSP--------------------KPFLSCGEDAVVFHIDLRQDVPAEKFVCR  274 (559)
T ss_pred             eeccccceecceecccccCccceeeecCCCC--------------------CcccccccccceeeeeeccCCccceeeee
Confidence            766544332   3455666777777776654                    24889999999999999887655444322


Q ss_pred             CC-C---CCcCeEEEcc-CCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccc
Q 001295          608 GG-L---PASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAG  682 (1106)
Q Consensus       608 ~~-~---~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  682 (1106)
                      .. .   -...+++..| +...+++|+.|..+++||.+.-...  ...+   .+.        .|.+..           
T Consensus       275 ~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e--~~n~---~~~--------~f~p~h-----------  330 (559)
T KOG1334|consen  275 EADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKE--ENNG---VLD--------KFCPHH-----------  330 (559)
T ss_pred             ccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhc--cccc---hhh--------hcCCcc-----------
Confidence            21 1   1456788888 4558999999999999987543110  0000   000        111110           


Q ss_pred             cccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEee
Q 001295          683 LADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALA  762 (1106)
Q Consensus       683 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  762 (1106)
                                                ++                             ......|++++|+.++.-++++.
T Consensus       331 --------------------------l~-----------------------------~d~~v~ITgl~Ysh~~sElLaSY  355 (559)
T KOG1334|consen  331 --------------------------LV-----------------------------EDDPVNITGLVYSHDGSELLASY  355 (559)
T ss_pred             --------------------------cc-----------------------------ccCcccceeEEecCCccceeeee
Confidence                                      00                             01345789999999998899999


Q ss_pred             cCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEE-ecCCCEEEEEeC-CeEEEEEcCC
Q 001295          763 SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL-SKNDSYVMSASG-GKISLFNMMT  840 (1106)
Q Consensus       763 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~-s~~~~~l~~~sd-g~i~vwd~~~  840 (1106)
                      .|-.|+++.-..+..    .......++      .......++|......|..+-| -|...|+++|+| |.|.||+-.+
T Consensus       356 nDe~IYLF~~~~~~G----~~p~~~s~~------~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t  425 (559)
T KOG1334|consen  356 NDEDIYLFNKSMGDG----SEPDPSSPR------EQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKT  425 (559)
T ss_pred             cccceEEeccccccC----CCCCCCcch------hhccchhhcccccccccceeeeccCccceEEecCccceEEEEecch
Confidence            999999985432211    000000000      0112222444223445777765 578899999997 9999999999


Q ss_pred             CceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecce
Q 001295          841 FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE  885 (1106)
Q Consensus       841 ~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~  885 (1106)
                      ++.++-+.+...-|+|+.-+| ---+||+.+-|..|+||...+.+
T Consensus       426 ~eii~~MegDr~VVNCLEpHP-~~PvLAsSGid~DVKIWTP~~~e  469 (559)
T KOG1334|consen  426 GEIIRFMEGDRHVVNCLEPHP-HLPVLASSGIDHDVKIWTPLTAE  469 (559)
T ss_pred             hHHHHHhhcccceEeccCCCC-CCchhhccCCccceeeecCCccc
Confidence            999999998888899999888 56799999999999999875443

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=2e-15  Score=141.31  Aligned_cols=254  Identities=15%  Similarity=0.194  Sum_probs=172.4

Q ss_pred             CCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEE
Q 001295          351 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA  430 (1106)
Q Consensus       351 ~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~  430 (1106)
                      ..|.+-++||.+++ +++|..+|+|.|..+.+--.-..         .+..........+|.++|+.++|.  ..+|++|
T Consensus        11 ~tvf~qa~sp~~~~-l~agn~~G~iav~sl~sl~s~sa---------~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~   78 (325)
T KOG0649|consen   11 NTVFAQAISPSKQY-LFAGNLFGDIAVLSLKSLDSGSA---------EPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSG   78 (325)
T ss_pred             HHHHHHhhCCcceE-EEEecCCCeEEEEEehhhhcccc---------CCCCCcceeeccccCCCeeeeeee--hhheeec
Confidence            45667789999996 88999999999998864211100         001111111358999999999998  5567777


Q ss_pred             eCCCeEEEEEccCCce---eeeeee--ecccc-----CCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEecc
Q 001295          431 YSRHIVQIYSYHGGDE---VRQHLE--IDAHV-----GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH  500 (1106)
Q Consensus       431 ~~d~~v~iwd~~~~~~---~~~~~~--l~~h~-----~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h  500 (1106)
                      + ||.|+=|..+....   .+....  ..-|.     -.|+++-..|...  -++.++.|+.++-||+++|+..++++||
T Consensus        79 g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~rGH  155 (325)
T KOG0649|consen   79 G-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYRGH  155 (325)
T ss_pred             c-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEcCC
Confidence            6 59999998764322   111100  11122     3588999998877  4566668999999999999999999999


Q ss_pred             CCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCE
Q 001295          501 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR  580 (1106)
Q Consensus       501 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~  580 (1106)
                      ++.|.++.-..  ....+++|+.||++|+||.++.+....+..-.++-   ..-|+-        ..-|  .+..-+..+
T Consensus       156 tDYvH~vv~R~--~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~---~lRp~~--------g~wi--gala~~edW  220 (325)
T KOG0649|consen  156 TDYVHSVVGRN--ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPN---LLRPDW--------GKWI--GALAVNEDW  220 (325)
T ss_pred             cceeeeeeecc--cCcceeecCCCccEEEEeccccceeEEeccccChh---hcCccc--------Ccee--EEEeccCce
Confidence            99999998522  22479999999999999999988776544322110   000110        0011  222333446


Q ss_pred             EEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEcc
Q 001295          581 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS  640 (1106)
Q Consensus       581 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~  640 (1106)
                      +++|+. ..+.+|++++.++...+....+   +..+.|..  ..+++++..+.+.-|.+.
T Consensus       221 lvCGgG-p~lslwhLrsse~t~vfpipa~---v~~v~F~~--d~vl~~G~g~~v~~~~l~  274 (325)
T KOG0649|consen  221 LVCGGG-PKLSLWHLRSSESTCVFPIPAR---VHLVDFVD--DCVLIGGEGNHVQSYTLN  274 (325)
T ss_pred             EEecCC-CceeEEeccCCCceEEEecccc---eeEeeeec--ceEEEeccccceeeeeec
Confidence            777654 5799999999999888876654   66778854  567777777788888664

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.70  E-value=2.5e-16  Score=165.49  Aligned_cols=277  Identities=18%  Similarity=0.275  Sum_probs=181.9

Q ss_pred             eeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCC--------CceeEEEeccCCCeEEEeccccCCceEEEEEec
Q 001295          452 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN--------GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL  523 (1106)
Q Consensus       452 ~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~--------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~  523 (1106)
                      ++..|...|..++|.+-..  .|++++.|++|++|+++.        -+++.+|.+|.++|.|+++.  .++..+++|+.
T Consensus       289 tl~s~~d~ir~l~~~~sep--~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~--~n~~~~ysgg~  364 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEP--VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVP--SNGEHCYSGGI  364 (577)
T ss_pred             eeecchhhhhhhhcCCCCC--eEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEec--CCceEEEeecc
Confidence            4667999999999999888  899999999999999932        35678999999999999974  55689999999


Q ss_pred             CCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEE
Q 001295          524 DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTS  603 (1106)
Q Consensus       524 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  603 (1106)
                      ||+|++|++........  .+...        .....+.||.+ .++.+++++...+|++++.||+++.|+.....+ .+
T Consensus       365 Dg~I~~w~~p~n~dp~d--s~dp~--------vl~~~l~Ghtd-avw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~  432 (577)
T KOG0642|consen  365 DGTIRCWNLPPNQDPDD--SYDPS--------VLSGTLLGHTD-AVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CT  432 (577)
T ss_pred             CceeeeeccCCCCCccc--ccCcc--------hhccceecccc-ceeeeeecccccceeeecCCceEEeeccCCcCc-cc
Confidence            99999997763221110  00000        00122333333 566666777777899999999999999876655 33


Q ss_pred             EccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhccccc
Q 001295          604 IDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGL  683 (1106)
Q Consensus       604 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  683 (1106)
                      +........-.++.+-...  ++....+.....+++.+. ..                                      
T Consensus       433 f~~~~e~g~Plsvd~~ss~--~a~~~~s~~~~~~~~~~~-ev--------------------------------------  471 (577)
T KOG0642|consen  433 FGEPKEHGYPLSVDRTSSR--PAHSLASFRFGYTSIDDM-EV--------------------------------------  471 (577)
T ss_pred             cCCccccCCcceEeeccch--hHhhhhhcccccccchhh-hh--------------------------------------
Confidence            3322221222333332211  111111111111111110 00                                      


Q ss_pred             ccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeec
Q 001295          684 ADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS  763 (1106)
Q Consensus       684 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  763 (1106)
                                                                                    +..+.+.+.+       .
T Consensus       472 --------------------------------------------------------------~s~~~~~~s~-------~  482 (577)
T KOG0642|consen  472 --------------------------------------------------------------VSDLLIFESS-------A  482 (577)
T ss_pred             --------------------------------------------------------------hhheeecccc-------C
Confidence                                                                          0000000000       0


Q ss_pred             CceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCc
Q 001295          764 NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFK  842 (1106)
Q Consensus       764 dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~  842 (1106)
                      ....                                        .....+.-+...|.+.+.+++. |+.|+++|..++.
T Consensus       483 ~~~~----------------------------------------~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~  522 (577)
T KOG0642|consen  483 SPGP----------------------------------------RRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK  522 (577)
T ss_pred             CCcc----------------------------------------cccCccceEEecCCCCeeEecccCCceecccccccc
Confidence            0000                                        0123345566677777777777 8999999999999


Q ss_pred             eeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCccc
Q 001295          843 TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK  895 (1106)
Q Consensus       843 ~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~  895 (1106)
                      .+.....|...++++++.| +|-+|++|+.||.|++|.+....++.....|..
T Consensus       523 ~l~s~~a~~~svtslai~~-ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r~  574 (577)
T KOG0642|consen  523 ILHSMVAHKDSVTSLAIDP-NGPYLMSGSHDGSVRLWKLDVKTCVLESTAHRK  574 (577)
T ss_pred             cchheeeccceecceeecC-CCceEEeecCCceeehhhccchheeeccccccc
Confidence            9999999999999999999 999999999999999999988877777666643

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.70  E-value=2.3e-14  Score=143.08  Aligned_cols=261  Identities=14%  Similarity=0.183  Sum_probs=171.3

Q ss_pred             CCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeecCC---CCCeeEEEEecCCCceEEEe--eCCCcEEEEEeec
Q 001295          809 PEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPP---PPAATFLAFHPQDNNIIAIG--MDDSSIQIYNVRV  883 (1106)
Q Consensus       809 ~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~---~~~v~~l~~s~~d~~~la~g--~~dg~v~iwd~~~  883 (1106)
                      ....|.++.+  +.+.|++.-.+.|+|||+++.+.++++..-   ...+.++.++. ++.+||.=  ...|.|.|||+.+
T Consensus        86 fpt~IL~Vrm--Nr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~-~n~ylAyp~s~t~GdV~l~d~~n  162 (391)
T KOG2110|consen   86 FPTSILAVRM--NRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNN-ANCYLAYPGSTTSGDVVLFDTIN  162 (391)
T ss_pred             cCCceEEEEE--ccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCC-CCceEEecCCCCCceEEEEEccc
Confidence            4566777777  456788887777999999999999887643   33455666665 56688763  3468999999999


Q ss_pred             ceEEEEecCcccCeeEEEEecCCCEEEEEcCCCc-EEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-
Q 001295          884 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQ-LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-  961 (1106)
Q Consensus       884 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-  961 (1106)
                      .+.+..+..|.+.+.+|+|+++|.+||++|+-|+ |||+.+.+++.    ..++..|...  ..|.+++|+||+.+|++ 
T Consensus       163 l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~k----l~eFRRG~~~--~~IySL~Fs~ds~~L~~s  236 (391)
T KOG2110|consen  163 LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQK----LYEFRRGTYP--VSIYSLSFSPDSQFLAAS  236 (391)
T ss_pred             ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccE----eeeeeCCcee--eEEEEEEECCCCCeEEEe
Confidence            9999999999999999999999999999999998 68999998764    4455555543  57899999999999999 


Q ss_pred             EeCCeEEEEecCCceEeeecccCCCCCCeeEEE-ECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCc
Q 001295          962 VHETQLAIFETTKLECVKQWVPRESSAPITHAT-FSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNV 1040 (1106)
Q Consensus       962 ~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~-~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v 1040 (1106)
                      +..++|.+|.+++...-..      ..+-..-. +.+-.+.+.+=--.+.-.+||...  ......    ++..   ...
T Consensus       237 S~TeTVHiFKL~~~~~~~~------~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R--~FAt~~----l~~s---~~~  301 (391)
T KOG2110|consen  237 SNTETVHIFKLEKVSNNPP------ESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSR--KFATAK----LPES---GRK  301 (391)
T ss_pred             cCCCeEEEEEecccccCCC------CCCCCCCcccchhhhhhhhhcchhhhhhhhhcc--ceeEEE----ccCC---Ccc
Confidence            5778999999876541111      10000000 000000011000011223355433  233222    2211   101


Q ss_pred             cceEEEEeC-CCCCEEEEEeCCCcEEEEeecC--CCCccCCCCCCCCCCCCCCCCCCC
Q 001295         1041 HPLVIAAHP-QEPNEFALGLSDGGVHVFEPLE--SEGKWGVPPPVDNGSTSSMPATPP 1095 (1106)
Q Consensus      1041 ~~~~~~~~~-~d~~~l~t~~~Dg~v~vW~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 1095 (1106)
                      .  .+++.+ ....++..++.||.++.+.++-  |...+-+.+-+-.|+.....+++.
T Consensus       302 ~--~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~gGec~lik~h~~~~~~~t~~a~~~  357 (391)
T KOG2110|consen  302 N--ICSLSSIQKIPRVLVASYDGHLYSYRLPPKEGGECALIKRHFLDGSIDTSAASGK  357 (391)
T ss_pred             c--eEEeeccCCCCEEEEEEcCCeEEEEEcCCCCCceeEEEEeeccCCcccccccccc
Confidence            1  233332 2467888899999999999875  445555555666666665544444

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=4.4e-16  Score=160.28  Aligned_cols=273  Identities=12%  Similarity=0.158  Sum_probs=202.7

Q ss_pred             cCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc--CCC
Q 001295          348 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGS  425 (1106)
Q Consensus       348 ~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~  425 (1106)
                      .|.+-|+.|-|...|. +|++|+.|..|.+||+..++....                  ...||...|....|-|  +.+
T Consensus       140 ~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~------------------f~SGH~~NvfQaKFiP~s~d~  200 (559)
T KOG1334|consen  140 KHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLS------------------FESGHCNNVFQAKFIPFSGDR  200 (559)
T ss_pred             CCCCccceeeecccCc-eeeccCccceEEeehhhccCcccc------------------cccccccchhhhhccCCCCCc
Confidence            3999999999999999 699999999999999998877654                  3589999999999998  667


Q ss_pred             EEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEe---ccCC
Q 001295          426 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE---GHEA  502 (1106)
Q Consensus       426 ~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~h~~  502 (1106)
                      .+++++.||.|++=.+.....+.....+..|.++|.-++.-|+..+ -|.|++.|+.+.-.|++.+.+...+.   .+..
T Consensus       201 ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~  279 (559)
T KOG1334|consen  201 TIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFVCREADEK  279 (559)
T ss_pred             CceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceeeeeccCCc
Confidence            8999999999999887654444444567789999999999999887 79999999999999998876544332   2333


Q ss_pred             ---CeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCC
Q 001295          503 ---PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN  579 (1106)
Q Consensus       503 ---~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~  579 (1106)
                         ....++..|... ..+++|+.|..+++||.+.......    .+.+.  .|.|..   +.....-.|+++.|+.++.
T Consensus       280 ~~v~L~~Ia~~P~nt-~~faVgG~dqf~RvYD~R~~~~e~~----n~~~~--~f~p~h---l~~d~~v~ITgl~Ysh~~s  349 (559)
T KOG1334|consen  280 ERVGLYTIAVDPRNT-NEFAVGGSDQFARVYDQRRIDKEEN----NGVLD--KFCPHH---LVEDDPVNITGLVYSHDGS  349 (559)
T ss_pred             cceeeeeEecCCCCc-cccccCChhhhhhhhcccchhhccc----cchhh--hcCCcc---ccccCcccceeEEecCCcc
Confidence               456777766543 5899999999999999875332210    00000  111110   0112223566777776666


Q ss_pred             EEEEEECCCeEEEEECCC--c----------ceeEE-EccCCCCCCcCeEEE-ccCCCEEEEEeCCCcEEEEEccCCchh
Q 001295          580 RFLAAGDDFSIKFWDMDS--V----------QLLTS-IDADGGLPASPRIRF-NKDGCLLAVSTNDNGIKILATSDGIRL  645 (1106)
Q Consensus       580 ~l~~~~~d~~i~iwd~~~--~----------~~~~~-~~~~~~~~~v~~v~~-s~~~~~l~~~~~dg~i~iwd~~~~~~~  645 (1106)
                      -+++...|-.|++++-..  |          ..+.. +++|.....|..+-| -|...|+++|++-|.|.||+-.++ +.
T Consensus       350 ElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~-ei  428 (559)
T KOG1334|consen  350 ELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG-EI  428 (559)
T ss_pred             ceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh-HH
Confidence            788888888999996432  2          22233 677776667877775 578899999999999999998888 66


Q ss_pred             hhhhcc
Q 001295          646 LRTFEN  651 (1106)
Q Consensus       646 ~~~~~~  651 (1106)
                      ++.+++
T Consensus       429 i~~Meg  434 (559)
T KOG1334|consen  429 IRFMEG  434 (559)
T ss_pred             HHHhhc
Confidence            666654

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.69  E-value=5.6e-15  Score=165.58  Aligned_cols=195  Identities=18%  Similarity=0.211  Sum_probs=145.3

Q ss_pred             CCEEEEEeCCeEEEEEcCCCceeeeecC-CCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecc---eEEEEecCcccC-
Q 001295          822 DSYVMSASGGKISLFNMMTFKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD---EVKSKLKGHSKR-  896 (1106)
Q Consensus       822 ~~~l~~~sdg~i~vwd~~~~~~~~~~~~-~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~---~~~~~l~~h~~~-  896 (1106)
                      |.++++|.-..|+|||+....+...+.. ....|+++.-+...|.++|.|..||.|++||.+..   ..+...+.|++. 
T Consensus      1178 G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~ 1257 (1387)
T KOG1517|consen 1178 GHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVE 1257 (1387)
T ss_pred             CeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcc
Confidence            3344444457899999998777776653 34457777766656899999999999999998763   356778889988 


Q ss_pred             -eeEEEEecCCCE-EEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCC
Q 001295          897 -ITGLAFSHALNV-LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTK  974 (1106)
Q Consensus       897 -V~~l~~s~d~~~-l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~  974 (1106)
                       |..+.+-+.|-- |+||+.||.|++||++......  .+.+.. +....+..+++..+++...+|+|+.+.|.||++..
T Consensus      1258 ~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~--~~~iv~-~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1258 PIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET--FLTIVA-HWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSG 1334 (1387)
T ss_pred             cceeEEeecCCCcceeeeccCCeEEEEecccCcccc--cceeee-ccccCccceeeeeccCCCeeeecCcceEEEEecCh
Confidence             999999887654 9999999999999998842221  222221 11001247999999999999998779999999874


Q ss_pred             ceEeeecccC-----CCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCce
Q 001295          975 LECVKQWVPR-----ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1020 (1106)
Q Consensus       975 ~~~~~~~~~~-----~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~ 1020 (1106)
                       +.+..+...     .....+.|++|.|-.-+||+|+.|.+|.||......
T Consensus      1335 -~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1335 -EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             -hhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence             433333321     125678999999999999999999999999877653

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.68  E-value=8.7e-15  Score=163.34  Aligned_cols=285  Identities=15%  Similarity=0.167  Sum_probs=195.9

Q ss_pred             CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCce--eE----EEeccCCCeEEE
Q 001295          434 HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK--QY----IFEGHEAPVYSV  507 (1106)
Q Consensus       434 ~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~--~~----~~~~h~~~v~~~  507 (1106)
                      +.+.||++.......  ..+. -...|.++.|+|.... +++.|..+|+|.+||++.+..  ..    ....|..+++.+
T Consensus       222 ~~~~vW~~~~p~~Pe--~~~~-~~s~v~~~~f~p~~p~-ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~v  297 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPE--LVLE-SPSEVTCLKFCPFDPN-LLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAV  297 (555)
T ss_pred             ceEEEEecCCCCCce--EEEe-cCCceeEEEeccCCcc-eEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEE
Confidence            479999998763222  2232 4578999999999887 799999999999999987665  22    223588899999


Q ss_pred             eccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECC
Q 001295          508 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD  587 (1106)
Q Consensus       508 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  587 (1106)
                      .|..+....-|++++.||.|..|+++.........                                       ....  
T Consensus       298 vW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~---------------------------------------~~~~--  336 (555)
T KOG1587|consen  298 VWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGL---------------------------------------LLES--  336 (555)
T ss_pred             EEeccCCCCceEEEecCCcEeeeeccccccchhhc---------------------------------------cccc--
Confidence            98776655668888889999999766432211100                                       0000  


Q ss_pred             CeEEEEECCCcceeEEEccCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCC
Q 001295          588 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT  666 (1106)
Q Consensus       588 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  666 (1106)
                       .     ...+.   ..   .....++++.|.+ +-..+++|+.+|.|.--+.... ...                    
T Consensus       337 -~-----~~~~~---~~---~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~-~~~--------------------  383 (555)
T KOG1587|consen  337 -K-----KHKGQ---QS---SKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY-TPA--------------------  383 (555)
T ss_pred             -c-----ccccc---cc---ccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC-ccc--------------------
Confidence             0     00000   00   1123467888888 6678899999998865322111 000                    


Q ss_pred             cCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccce
Q 001295          667 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI  746 (1106)
Q Consensus       667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i  746 (1106)
                                                                                                     .
T Consensus       384 -------------------------------------------------------------------------------~  384 (555)
T KOG1587|consen  384 -------------------------------------------------------------------------------P  384 (555)
T ss_pred             -------------------------------------------------------------------------------c
Confidence                                                                                           0


Q ss_pred             EEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCE-E
Q 001295          747 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY-V  825 (1106)
Q Consensus       747 ~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~-l  825 (1106)
                      . +.|.+...                                               .  ..|.+.|+++.++|-+.. +
T Consensus       385 ~-~~~~~~~~-----------------------------------------------~--~~h~g~v~~v~~nPF~~k~f  414 (555)
T KOG1587|consen  385 E-VSYKGHST-----------------------------------------------F--ITHIGPVYAVSRNPFYPKNF  414 (555)
T ss_pred             c-cccccccc-----------------------------------------------c--cccCcceEeeecCCCcccee
Confidence            0 00000000                                               0  117788888888887654 4


Q ss_pred             EEEeCCeEEEEEcC-CCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeec--ceEEEEecCcccCeeEEEE
Q 001295          826 MSASGGKISLFNMM-TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV--DEVKSKLKGHSKRITGLAF  902 (1106)
Q Consensus       826 ~~~sdg~i~vwd~~-~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~--~~~~~~l~~h~~~V~~l~~  902 (1106)
                      .+++|.+++||... ....+..+..+...+++++|||....++|++..||.|.|||+..  ...+.+..-+....+.+.|
T Consensus       415 ls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~  494 (555)
T KOG1587|consen  415 LSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRW  494 (555)
T ss_pred             eeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeec
Confidence            45559999999987 66667777777888999999997778999999999999999965  3444555555667788889


Q ss_pred             ecCCCEEEEEcCCCcEEEEeCCC
Q 001295          903 SHALNVLVSSGADSQLCVWSSDG  925 (1106)
Q Consensus       903 s~d~~~l~s~s~Dg~i~vwd~~~  925 (1106)
                      +++|+.|+.|+..|++.+|++..
T Consensus       495 s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  495 SPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             CCCCcEEEEecCCCcEEEEEcCc
Confidence            99999999999999999999964

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.67  E-value=4.8e-13  Score=151.48  Aligned_cols=152  Identities=16%  Similarity=0.292  Sum_probs=124.9

Q ss_pred             EEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeCCC
Q 001295          355 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH  434 (1106)
Q Consensus       355 ~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~  434 (1106)
                      -+.++++.-| +++|+.-+.|.+|+....+.-.                   .+.||++.|.++.||-||++++++|.|.
T Consensus       138 ~~g~s~~~~~-i~~gsv~~~iivW~~~~dn~p~-------------------~l~GHeG~iF~i~~s~dg~~i~s~SdDR  197 (967)
T KOG0974|consen  138 IIGDSAEELY-IASGSVFGEIIVWKPHEDNKPI-------------------RLKGHEGSIFSIVTSLDGRYIASVSDDR  197 (967)
T ss_pred             EEeccCcEEE-EEeccccccEEEEeccccCCcc-------------------eecccCCceEEEEEccCCcEEEEEecCc
Confidence            3445666665 8999999999999987221111                   2789999999999999999999999999


Q ss_pred             eEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccC-CCeEEEeccccC
Q 001295          435 IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE-APVYSVCPHHKE  513 (1106)
Q Consensus       435 ~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~-~~v~~~~~~~~~  513 (1106)
                      ++++|++++.+...  .+.-+|+.+|+.+.|.|+    .++|++.|.+.++|+ ..+..+..+.+|. ..++.++.... 
T Consensus       198 siRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~n----~i~t~gedctcrvW~-~~~~~l~~y~~h~g~~iw~~~~~~~-  269 (967)
T KOG0974|consen  198 SIRLWPIDSREVLG--CTGFGHSARVWACCFLPN----RIITVGEDCTCRVWG-VNGTQLEVYDEHSGKGIWKIAVPIG-  269 (967)
T ss_pred             ceeeeecccccccC--cccccccceeEEEEeccc----eeEEeccceEEEEEe-cccceehhhhhhhhcceeEEEEcCC-
Confidence            99999999988665  246689999999999988    499999999999997 4566666888886 45888886443 


Q ss_pred             CceEEEEEecCCeEEEEeCCCC
Q 001295          514 NIQFIFSTALDGKIKAWLYDNL  535 (1106)
Q Consensus       514 ~~~~l~s~~~dg~i~iwd~~~~  535 (1106)
                       ...++|++.|+.+++||+...
T Consensus       270 -~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  270 -VIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             -ceEEEeeccCcchhhhhhhcc
Confidence             378999999999999998754

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=1.1e-15  Score=155.59  Aligned_cols=198  Identities=16%  Similarity=0.174  Sum_probs=161.0

Q ss_pred             eEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecC
Q 001295          814 PCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG  892 (1106)
Q Consensus       814 ~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~  892 (1106)
                      .+++|+.+|..|++++ ||++|||+..+...+.....|..+|.++.||| |+++|++-+.| ..+||++.+|..+.....
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~  225 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP  225 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence            7899999999999998 99999999988888888888999999999999 99999999999 999999999977766653


Q ss_pred             --cccCeeEEEEecCC-----CEEEEEcCCCcEEEEeCCCcccccc-eeecccCCCCCCCCCCceEEEcCCCcEEEEE-e
Q 001295          893 --HSKRITGLAFSHAL-----NVLVSSGADSQLCVWSSDGWEKQKN-RFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H  963 (1106)
Q Consensus       893 --h~~~V~~l~~s~d~-----~~l~s~s~Dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~  963 (1106)
                        -......+.|+.|+     ...++...-+.|+.|++..+..... +..+....+    ..|.+++.|+||+++|.+ .
T Consensus       226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~----~siSsl~VS~dGkf~AlGT~  301 (398)
T KOG0771|consen  226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF----KSISSLAVSDDGKFLALGTM  301 (398)
T ss_pred             cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc----CcceeEEEcCCCcEEEEecc
Confidence              22335567888877     3444555567788888776554210 011111111    378999999999999994 8


Q ss_pred             CCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCC
Q 001295          964 ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1018 (1106)
Q Consensus       964 d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~ 1018 (1106)
                      ||.|.|++..+.+++.... +.|..-|+.+.|+||.+++++.+.|.++.|..+.-
T Consensus       302 dGsVai~~~~~lq~~~~vk-~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  302 DGSVAIYDAKSLQRLQYVK-EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             CCcEEEEEeceeeeeEeeh-hhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            9999999999999887765 58999999999999999999999999999988754

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.66  E-value=1.2e-14  Score=139.95  Aligned_cols=245  Identities=15%  Similarity=0.228  Sum_probs=177.4

Q ss_pred             CCCCeeEEEEecCCC----EEEEEeCCeEEEEEcCCC--cee--eee-----cCCCCCeeEEEEecCCCceEEEeeCCCc
Q 001295          809 PEEAVPCFALSKNDS----YVMSASGGKISLFNMMTF--KTM--ATF-----MPPPPAATFLAFHPQDNNIIAIGMDDSS  875 (1106)
Q Consensus       809 ~~~~v~~l~~s~~~~----~l~~~sdg~i~vwd~~~~--~~~--~~~-----~~~~~~v~~l~~s~~d~~~la~g~~dg~  875 (1106)
                      |..+++.+.|.|+.+    -+++.++..+|+|.+...  +..  ..+     ..+..++++..|...+.++|.+.+-|-+
T Consensus        95 ~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTT  174 (364)
T KOG0290|consen   95 HPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTT  174 (364)
T ss_pred             CCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCe
Confidence            889999999999874    233444678999998732  211  111     2345689999999888999999999999


Q ss_pred             EEEEEeecc---eEEEEecCcccCeeEEEEecCC-CEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEE
Q 001295          876 IQIYNVRVD---EVKSKLKGHSKRITGLAFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ  951 (1106)
Q Consensus       876 v~iwd~~~~---~~~~~l~~h~~~V~~l~~s~d~-~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  951 (1106)
                      ..|||+.++   .+...|-+|..+|..++|..++ ..+||+|.||.||++|++..+..  .++-....   .......++
T Consensus       175 CTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS--TIIYE~p~---~~~pLlRLs  249 (364)
T KOG0290|consen  175 CTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS--TIIYEDPS---PSTPLLRLS  249 (364)
T ss_pred             EEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc--eEEecCCC---CCCcceeec
Confidence            999999986   3567888999999999999865 57899999999999999984432  22211111   124667888


Q ss_pred             EcC-CCcEEEE-E-eCCeEEEEecCCce-EeeecccCCCCCCeeEEEECCCC-CEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295          952 FHQ-DQIHFLV-V-HETQLAIFETTKLE-CVKQWVPRESSAPITHATFSCDS-QLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus       952 ~s~-dg~~l~~-~-~d~~v~i~d~~~~~-~~~~~~~~~h~~~v~~l~~s~d~-~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
                      |++ |-+++|+ + ....|.|.|++.-. .+..+  .+|.+.|..|+|.|.. ..|.++++|..+-+||+.+.-......
T Consensus       250 wnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L--~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~d  327 (364)
T KOG0290|consen  250 WNKQDPNYMATFAMDSNKVVILDIRVPCTPVARL--RNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGED  327 (364)
T ss_pred             cCcCCchHHhhhhcCCceEEEEEecCCCcceehh--hcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCC
Confidence            887 4577777 4 45679999997532 33344  4999999999999955 469999999999999998654311111


Q ss_pred             C-CcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEE
Q 001295         1027 P-SAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1067 (1106)
Q Consensus      1027 ~-~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW 1067 (1106)
                      + ..|.    ..++|.  .+.|++..++.++.+. ++++.+-
T Consensus       328 Pilay~----a~~EVN--qi~Ws~~~~Dwiai~~-~kkleiL  362 (364)
T KOG0290|consen  328 PILAYT----AGGEVN--QIQWSSSQPDWIAICF-GKKLEIL  362 (364)
T ss_pred             chhhhh----ccceee--eeeecccCCCEEEEEe-cCeeeEE
Confidence            1 1122    134466  7999988888888876 4444443

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.65  E-value=4.5e-15  Score=145.07  Aligned_cols=209  Identities=15%  Similarity=0.185  Sum_probs=162.3

Q ss_pred             CcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCC-
Q 001295          412 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-  490 (1106)
Q Consensus       412 ~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~-  490 (1106)
                      ..+|+|.+|++|+..+|.+-.+..|.||.....+......++..|...|+.|+|+|...  .|++|+.|..-+||...+ 
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~~   87 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPSG   87 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCCC
Confidence            45899999999999999999999999999998887777789999999999999999998  699999999999999843 


Q ss_pred             C--ceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccc
Q 001295          491 G--AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS  568 (1106)
Q Consensus       491 ~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~  568 (1106)
                      +  ++.-.+..+....+++.|+|.+  +.|++|+.-..|.+|-++....=..-+....++                 ...
T Consensus        88 ~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKhikkPi-----------------rSt  148 (361)
T KOG1523|consen   88 GTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKHIKKPI-----------------RST  148 (361)
T ss_pred             CeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhhhCCcc-----------------ccc
Confidence            3  3344566688999999998776  589999999999998665422111000001111                 125


Q ss_pred             eeEEEEcCCCCEEEEEECCCeEEEEECC-----C-------------cceeEEEccCCCCCCcCeEEEccCCCEEEEEeC
Q 001295          569 LGVVQFDTTKNRFLAAGDDFSIKFWDMD-----S-------------VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN  630 (1106)
Q Consensus       569 i~~~~~~~~~~~l~~~~~d~~i~iwd~~-----~-------------~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  630 (1106)
                      +.+++|+|++-.+++|+.|+..|++..-     .             |+++..+.  ...+.+..+.|+|+|..|+-.+.
T Consensus       149 v~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~--~~ggwvh~v~fs~sG~~lawv~H  226 (361)
T KOG1523|consen  149 VTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS--SSGGWVHGVLFSPSGNRLAWVGH  226 (361)
T ss_pred             eeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc--cCCCceeeeEeCCCCCEeeEecC
Confidence            6667777777789999999999998641     1             22333332  22357899999999999999999


Q ss_pred             CCcEEEEEccCCc
Q 001295          631 DNGIKILATSDGI  643 (1106)
Q Consensus       631 dg~i~iwd~~~~~  643 (1106)
                      |+++.+-|...+.
T Consensus       227 ds~v~~~da~~p~  239 (361)
T KOG1523|consen  227 DSTVSFVDAAGPS  239 (361)
T ss_pred             CCceEEeecCCCc
Confidence            9999999987664

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.65  E-value=1.4e-14  Score=139.30  Aligned_cols=252  Identities=16%  Similarity=0.260  Sum_probs=184.8

Q ss_pred             ccCCCCcEEEEEecCCC----eEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc
Q 001295          347 LNQGSSPMSMDFHPVQQ----TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  422 (1106)
Q Consensus       347 ~~h~~~v~~~~~sp~g~----~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp  422 (1106)
                      +.|.-+++.+.|.|+..    .||||.+  -.+++|.+...+.....          ...+....-..+..++++..|+.
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~----------~~~L~~~kns~~~aPlTSFDWne  160 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVEL----------QSVLNNNKNSEFCAPLTSFDWNE  160 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceeh----------hhhhccCcccccCCccccccccc
Confidence            67999999999999873    3687654  58999998743221110          11111222356778999999998


Q ss_pred             -CCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEE---e
Q 001295          423 -DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF---E  498 (1106)
Q Consensus       423 -dg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~  498 (1106)
                       |-+++.+++-|-+-.|||++++..-.....|-+|...|..|+|...+.. +|++.|.||+||++|++.-+.-..+   .
T Consensus       161 ~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~-~FASvgaDGSvRmFDLR~leHSTIIYE~p  239 (364)
T KOG0290|consen  161 VDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRD-VFASVGADGSVRMFDLRSLEHSTIIYEDP  239 (364)
T ss_pred             CCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccc-eEEEecCCCcEEEEEecccccceEEecCC
Confidence             8899999999999999999997432222347789999999999998877 8999999999999999876543333   2


Q ss_pred             ccCCCeEEEeccccCCceEEEEEecC-CeEEEEeCCCCC-ceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcC
Q 001295          499 GHEAPVYSVCPHHKENIQFIFSTALD-GKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT  576 (1106)
Q Consensus       499 ~h~~~v~~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~  576 (1106)
                      ....+...++|+.. |-+++++-..| ..|.+-|++... .+..+..|...|..++|.|...                  
T Consensus       240 ~~~~pLlRLswnkq-DpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~------------------  300 (364)
T KOG0290|consen  240 SPSTPLLRLSWNKQ-DPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSS------------------  300 (364)
T ss_pred             CCCCcceeeccCcC-CchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCC------------------
Confidence            22456778888654 44678877665 568999998754 4557889999999999988775                  


Q ss_pred             CCCEEEEEECCCeEEEEECCCcc------eeEEEccCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEE
Q 001295          577 TKNRFLAAGDDFSIKFWDMDSVQ------LLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKI  636 (1106)
Q Consensus       577 ~~~~l~~~~~d~~i~iwd~~~~~------~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~i  636 (1106)
                        ..+++++.|..+.+||+...-      ++..+.   ....|+.+.|++ .+..++++.. +.+.+
T Consensus       301 --~hictaGDD~qaliWDl~q~~~~~~~dPilay~---a~~EVNqi~Ws~~~~Dwiai~~~-kklei  361 (364)
T KOG0290|consen  301 --SHICTAGDDCQALIWDLQQMPRENGEDPILAYT---AGGEVNQIQWSSSQPDWIAICFG-KKLEI  361 (364)
T ss_pred             --ceeeecCCcceEEEEecccccccCCCCchhhhh---ccceeeeeeecccCCCEEEEEec-CeeeE
Confidence              468999999999999997532      122222   234689999997 6778877765 34433

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.65  E-value=5.7e-14  Score=160.45  Aligned_cols=213  Identities=11%  Similarity=0.113  Sum_probs=151.3

Q ss_pred             cCCCCcCeEEEEEccC-CCEEEEEeCCCeEEEEEccCC----ceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCc
Q 001295          408 VKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQIYSYHGG----DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT  482 (1106)
Q Consensus       408 ~~~h~~~V~~l~~spd-g~~las~~~d~~v~iwd~~~~----~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~  482 (1106)
                      +..|...|..++.++. +.++++||.||+|++||...-    ...+...++.-...++.++.+.+.+.  .+|.++.||.
T Consensus      1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDGS 1121 (1431)
T ss_pred             hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCCe
Confidence            7789999999999885 599999999999999998631    22333334544567899999999999  7888999999


Q ss_pred             EEEEeCCC--Cc-----eeEEEecc-CCCeEEE-eccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEE
Q 001295          483 IKVWDATN--GA-----KQYIFEGH-EAPVYSV-CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAY  553 (1106)
Q Consensus       483 i~iwd~~~--~~-----~~~~~~~h-~~~v~~~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  553 (1106)
                      |++.++..  .+     +.+....+ .+.+.++ ++........++.+..-+.|..||++.......++...        
T Consensus      1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~-------- 1193 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL-------- 1193 (1431)
T ss_pred             EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc--------
Confidence            99999875  21     11222222 2334444 33322222378888899999999998765554333221        


Q ss_pred             ecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccC---CCEEEEEe-
Q 001295          554 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD---GCLLAVST-  629 (1106)
Q Consensus       554 s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~---~~~l~~~~-  629 (1106)
                                 +.+.+++++.+|.++++++|...|.+.+||++-+.++.......+ .++..+..+|-   ....++++ 
T Consensus      1194 -----------~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~-~~i~~v~~~~~~~~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1194 -----------RHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPAR-APIRHVWLCPTYPQESVSVSAGS 1261 (1431)
T ss_pred             -----------cccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCccc-CCcceEEeeccCCCCceEEEecc
Confidence                       122455566666667999999999999999999999888865544 56777777762   24554444 


Q ss_pred             -CCCcEEEEEccCC
Q 001295          630 -NDNGIKILATSDG  642 (1106)
Q Consensus       630 -~dg~i~iwd~~~~  642 (1106)
                       ..+.|.+|++.+|
T Consensus      1262 ~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1262 SSNNEVSTWNMETG 1275 (1431)
T ss_pred             cCCCceeeeecccC
Confidence             4788999999888

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.64  E-value=3.2e-15  Score=152.32  Aligned_cols=199  Identities=17%  Similarity=0.171  Sum_probs=151.8

Q ss_pred             eEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceee
Q 001295          855 TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFL  934 (1106)
Q Consensus       855 ~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~  934 (1106)
                      .+++|+. ++..|++|+.||++|||+..+...+.....|...|.+|.|||||++|++.+.| ..+||++.++-..     
T Consensus       148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~-----  220 (398)
T KOG0771|consen  148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAAL-----  220 (398)
T ss_pred             eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchh-----
Confidence            7899999 89999999999999999988888888888899999999999999999999999 8999999997322     


Q ss_pred             cccCCCCCCCCCCceEEEcCCC---cE-EEE--EeCCeEEEEecCCceE---eeecccCCCCCCeeEEEECCCCCEEEEE
Q 001295          935 QIPTGRTPTAQSDTRVQFHQDQ---IH-FLV--VHETQLAIFETTKLEC---VKQWVPRESSAPITHATFSCDSQLVYAC 1005 (1106)
Q Consensus       935 ~~~~~~~~~~~~i~~~~~s~dg---~~-l~~--~~d~~v~i~d~~~~~~---~~~~~~~~h~~~v~~l~~s~d~~~l~t~ 1005 (1106)
                      ..... .........+.|+.|+   .+ +++  ..-+.|+.||+.....   .+....-.-...|++++.|+||+++|.|
T Consensus       221 a~~t~-~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG  299 (398)
T KOG0771|consen  221 ARKTP-FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG  299 (398)
T ss_pred             hhcCC-cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe
Confidence            11111 1111356788999887   33 333  2445677776643322   1111111124589999999999999999


Q ss_pred             EcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecC
Q 001295         1006 FLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1071 (1106)
Q Consensus      1006 s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~ 1071 (1106)
                      +.||.|.|++..+.+.+.-++      ..|.. .|.  .+.|+| |.+.+++.+.|....|..+.-
T Consensus       300 T~dGsVai~~~~~lq~~~~vk------~aH~~-~VT--~ltF~P-dsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  300 TMDGSVAIYDAKSLQRLQYVK------EAHLG-FVT--GLTFSP-DSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             ccCCcEEEEEeceeeeeEeeh------hhhee-eee--eEEEcC-CcCcccccccCCceeEEEEee
Confidence            999999999998887776544      33322 355  999999 789999999999999998875

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.63  E-value=1.2e-14  Score=150.98  Aligned_cols=207  Identities=16%  Similarity=0.215  Sum_probs=160.7

Q ss_pred             CCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCcccc
Q 001295          706 VKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATA  785 (1106)
Q Consensus       706 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~  785 (1106)
                      .+.++.+++||.+.+.+-....+.        ....|.+.|.+-.|+|||.-|++++.||.|++|.-.            
T Consensus        75 ~d~~~i~s~DGkf~il~k~~rVE~--------sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs------------  134 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILNKSARVER--------SISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS------------  134 (737)
T ss_pred             cceEEEEcCCceEEEecccchhhh--------hhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc------------
Confidence            467888899999887764431111        114588999999999999999999999999999743            


Q ss_pred             ccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCc
Q 001295          786 SVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN  865 (1106)
Q Consensus       786 ~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~  865 (1106)
                                 |.+.....+   ...+|.|++|.|+...++.+..+.+.|=.+.-...+-..+.|.+-|.++.|++ -+.
T Consensus       135 -----------GMLRStl~Q---~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~-~s~  199 (737)
T KOG1524|consen  135 -----------GMLRSTVVQ---NEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWST-QSN  199 (737)
T ss_pred             -----------chHHHHHhh---cCceeEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCc-ccc
Confidence                       322221111   57889999999999999998888888888887777778889999999999999 889


Q ss_pred             eEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCC
Q 001295          866 IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQ  945 (1106)
Q Consensus       866 ~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  945 (1106)
                      ++++|++|-..+|||.. |..+..-..|.-+|++++|.|| +.++.++. .++++=..                   ..+
T Consensus       200 lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~~~p-------------------~~G  257 (737)
T KOG1524|consen  200 IIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARFSSP-------------------RVG  257 (737)
T ss_pred             ceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeee-eeeeecCC-------------------Ccc
Confidence            99999999999999965 6666667789999999999999 55554543 23442111                   114


Q ss_pred             CCceEEEcCCCcEEEEE-eCCeEEE
Q 001295          946 SDTRVQFHQDQIHFLVV-HETQLAI  969 (1106)
Q Consensus       946 ~i~~~~~s~dg~~l~~~-~d~~v~i  969 (1106)
                      .|..++||+||..++++ ..|.+.+
T Consensus       258 SifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  258 SIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             ceEEEEEcCCCceeeccccCceEEE
Confidence            78999999999999984 6665543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.63  E-value=9.3e-14  Score=158.73  Aligned_cols=269  Identities=14%  Similarity=0.158  Sum_probs=179.4

Q ss_pred             eeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc
Q 001295          343 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  422 (1106)
Q Consensus       343 ~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp  422 (1106)
                      +.++..|...|..++.++...-+++||+.||+|+|||...-..-. ..+           ....++.-.+..+.++...+
T Consensus      1041 VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-~s~-----------rS~ltys~~~sr~~~vt~~~ 1108 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-GSA-----------RSELTYSPEGSRVEKVTMCG 1108 (1431)
T ss_pred             eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-cee-----------eeeEEEeccCCceEEEEecc
Confidence            334445999999999998774479999999999999986422110 000           01112333567899999999


Q ss_pred             CCCEEEEEeCCCeEEEEEccCC--ceee--e--eeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEE
Q 001295          423 DGSLFGVAYSRHIVQIYSYHGG--DEVR--Q--HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI  496 (1106)
Q Consensus       423 dg~~las~~~d~~v~iwd~~~~--~~~~--~--~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~  496 (1106)
                      .+..+|+++.||.|++.+++-.  +...  +  ...+......|..-+|....+...++.+..-+.|..||+++.....+
T Consensus      1109 ~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~ 1188 (1431)
T KOG1240|consen 1109 NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR 1188 (1431)
T ss_pred             CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh
Confidence            9999999999999999998762  1111  1  11122222334555565554443677888889999999988776665


Q ss_pred             Eec--cCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCC-CeeEEEEEecCCCeEEEeeeccceeEEE
Q 001295          497 FEG--HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG-RWCTTMAYSADGTRTYQGFRKRSLGVVQ  573 (1106)
Q Consensus       497 ~~~--h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~~~~~~~~~~i~~~~  573 (1106)
                      ++.  ..+.|++++.++  .+.++++|...|.+.+||++=+..+..+..+. .++..+...+-.                
T Consensus      1189 lk~~~~hG~vTSi~idp--~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~---------------- 1250 (1431)
T KOG1240|consen 1189 LKNQLRHGLVTSIVIDP--WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTY---------------- 1250 (1431)
T ss_pred             hhcCccccceeEEEecC--CceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccC----------------
Confidence            542  457899999755  44799999999999999999777666554432 244444443322                


Q ss_pred             EcCCCCEEEEE-E-CCCeEEEEECCCcceeEEEccCCC-----------------CCCcCeEEEccCCCEEEEEeCCCcE
Q 001295          574 FDTTKNRFLAA-G-DDFSIKFWDMDSVQLLTSIDADGG-----------------LPASPRIRFNKDGCLLAVSTNDNGI  634 (1106)
Q Consensus       574 ~~~~~~~l~~~-~-~d~~i~iwd~~~~~~~~~~~~~~~-----------------~~~v~~v~~s~~~~~l~~~~~dg~i  634 (1106)
                        +.....+++ . ..+.|.+|++.+|.....+.....                 .-......+...+..+.+|+.|..|
T Consensus      1251 --~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kI 1328 (1431)
T KOG1240|consen 1251 --PQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKI 1328 (1431)
T ss_pred             --CCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccce
Confidence              122334443 3 578899999999877666643210                 0111223344456788999999999


Q ss_pred             EEEEccCCc
Q 001295          635 KILATSDGI  643 (1106)
Q Consensus       635 ~iwd~~~~~  643 (1106)
                      +.||.....
T Consensus      1329 R~wD~~~p~ 1337 (1431)
T KOG1240|consen 1329 RKWDPTRPE 1337 (1431)
T ss_pred             eeccCCCcc
Confidence            999987763

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.61  E-value=8.1e-13  Score=144.45  Aligned_cols=327  Identities=12%  Similarity=0.154  Sum_probs=195.1

Q ss_pred             EEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECC
Q 001295          517 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD  596 (1106)
Q Consensus       517 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~  596 (1106)
                      ++++-..++.|.+.|..+.+....+......-..+.+++||+                     ++++++.||.|.++|+.
T Consensus         8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr---------------------~~yv~~rdg~vsviD~~   66 (369)
T PF02239_consen    8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGR---------------------YLYVANRDGTVSVIDLA   66 (369)
T ss_dssp             EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SS---------------------EEEEEETTSEEEEEETT
T ss_pred             EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCC---------------------EEEEEcCCCeEEEEECC
Confidence            345666789999999998877777765544333445555555                     78888899999999999


Q ss_pred             CcceeEEEccCCCCCCcCeEEEccCCCEEEEEe-CCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHh
Q 001295          597 SVQLLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAA  675 (1106)
Q Consensus       597 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  675 (1106)
                      +++.+..+.....   ..++++++||++++++. .++.+.++|..+. +.++.+......                    
T Consensus        67 ~~~~v~~i~~G~~---~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl-e~v~~I~~~~~~--------------------  122 (369)
T PF02239_consen   67 TGKVVATIKVGGN---PRGIAVSPDGKYVYVANYEPGTVSVIDAETL-EPVKTIPTGGMP--------------------  122 (369)
T ss_dssp             SSSEEEEEE-SSE---EEEEEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE---------------------
T ss_pred             cccEEEEEecCCC---cceEEEcCCCCEEEEEecCCCceeEeccccc-cceeeccccccc--------------------
Confidence            9999999875433   57899999999999775 5899999998776 444333211100                    


Q ss_pred             hhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCC
Q 001295          676 AAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSG  755 (1106)
Q Consensus       676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~  755 (1106)
                                                                                     ......++..+..++..
T Consensus       123 ---------------------------------------------------------------~~~~~~Rv~aIv~s~~~  139 (369)
T PF02239_consen  123 ---------------------------------------------------------------VDGPESRVAAIVASPGR  139 (369)
T ss_dssp             ---------------------------------------------------------------TTTS---EEEEEE-SSS
T ss_pred             ---------------------------------------------------------------ccccCCCceeEEecCCC
Confidence                                                                           00123567778888888


Q ss_pred             ceEEEeecC-ceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe--CCe
Q 001295          756 NAILALASN-AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGK  832 (1106)
Q Consensus       756 ~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s--dg~  832 (1106)
                      ..+++.-.| +.|.+-|.....                     .+....+   ..........|+|++++++++.  ++.
T Consensus       140 ~~fVv~lkd~~~I~vVdy~d~~---------------------~~~~~~i---~~g~~~~D~~~dpdgry~~va~~~sn~  195 (369)
T PF02239_consen  140 PEFVVNLKDTGEIWVVDYSDPK---------------------NLKVTTI---KVGRFPHDGGFDPDGRYFLVAANGSNK  195 (369)
T ss_dssp             SEEEEEETTTTEEEEEETTTSS---------------------CEEEEEE---E--TTEEEEEE-TTSSEEEEEEGGGTE
T ss_pred             CEEEEEEccCCeEEEEEecccc---------------------ccceeee---cccccccccccCcccceeeecccccce
Confidence            866666554 766665544210                     0000001   1344566789999999988876  689


Q ss_pred             EEEEEcCCCceeeeecC----CCCCeeEE-------EEec-CCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEE
Q 001295          833 ISLFNMMTFKTMATFMP----PPPAATFL-------AFHP-QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL  900 (1106)
Q Consensus       833 i~vwd~~~~~~~~~~~~----~~~~v~~l-------~~s~-~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l  900 (1106)
                      |-++|..+++....+..    |..+...+       .|.. ..+...++.-....+.+||..+++.++++...... .-+
T Consensus       196 i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi  274 (369)
T PF02239_consen  196 IAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFI  274 (369)
T ss_dssp             EEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---E
T ss_pred             eEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-cee
Confidence            99999998877665432    22222222       1211 02223222223345667888888888888876666 667


Q ss_pred             EEecCCCEEEEE----cCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCce
Q 001295          901 AFSHALNVLVSS----GADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLE  976 (1106)
Q Consensus       901 ~~s~d~~~l~s~----s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~  976 (1106)
                      ..+||+++|...    ...++|.                                                 ++|.++.+
T Consensus       275 ~thP~s~~vwvd~~~~~~~~~v~-------------------------------------------------viD~~tl~  305 (369)
T PF02239_consen  275 KTHPDSRYVWVDTFLNPDADTVQ-------------------------------------------------VIDKKTLK  305 (369)
T ss_dssp             E--TT-SEEEEE-TT-SSHT-EE-------------------------------------------------EEECCGTE
T ss_pred             ecCCCCccEEeeccCCCCCceEE-------------------------------------------------EEECcCcc
Confidence            778888887766    2224444                                                 45555555


Q ss_pred             EeeecccCCCCCCeeEEEECCCCCEEEEEEcC--CeEEEEEcCCceeEEeeC
Q 001295          977 CVKQWVPRESSAPITHATFSCDSQLVYACFLD--ATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus       977 ~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~D--g~i~vwd~~~~~~~~~~~ 1026 (1106)
                      .+..+.... ...+..+.|++||+.+..+..+  +.|.|||..|.+++.++.
T Consensus       306 ~~~~i~~~~-~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  306 VVKTITPGP-GKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP  356 (369)
T ss_dssp             EEE-HHHHH-T--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred             eeEEEeccC-CCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence            554443211 3358999999999986655443  379999999999999887

...

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=5.7e-15  Score=153.89  Aligned_cols=238  Identities=11%  Similarity=0.157  Sum_probs=172.1

Q ss_pred             eccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc--C
Q 001295          346 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--D  423 (1106)
Q Consensus       346 ~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp--d  423 (1106)
                      +.+|++-|+|++|+.||. +|++|+.|-.+.|||+-..+.++.                  +-.||...|.++.|-|  +
T Consensus        46 L~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllhs------------------I~TgHtaNIFsvKFvP~tn  106 (758)
T KOG1310|consen   46 LTGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHS------------------ISTGHTANIFSVKFVPYTN  106 (758)
T ss_pred             hccccceecceeecCCCC-EEeecCCcceEEeecchhcceeee------------------eecccccceeEEeeeccCC
Confidence            346999999999999999 699999999999999987777664                  4589999999999999  6


Q ss_pred             CCEEEEEeCCCeEEEEEccCCc-------eeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCce-eE
Q 001295          424 GSLFGVAYSRHIVQIYSYHGGD-------EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK-QY  495 (1106)
Q Consensus       424 g~~las~~~d~~v~iwd~~~~~-------~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-~~  495 (1106)
                      .+.+++|..|..|+++|+...+       ...+...+..|...|.-|+-.|++.. .+.++++||+|+-+|++.... -.
T Consensus       107 nriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph~c~p  185 (758)
T KOG1310|consen  107 NRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPHVCNP  185 (758)
T ss_pred             CeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCccCCc
Confidence            7889999999999999998521       12233356789999999999999966 799999999999999986321 11


Q ss_pred             ---------EEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeE-----eeCCCCeeEEE-EEecCCCeE
Q 001295          496 ---------IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD-----YEAPGRWCTTM-AYSADGTRT  560 (1106)
Q Consensus       496 ---------~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~v~~~-~~s~~~~~~  560 (1106)
                               .+...--...++.+++... .+|+.|+.|-..++||.+...+...     ...+.....++ -|+|++-..
T Consensus       186 ~~~~~~~l~ny~~~lielk~ltisp~rp-~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn  264 (758)
T KOG1310|consen  186 DEDCPSILVNYNPQLIELKCLTISPSRP-YYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKN  264 (758)
T ss_pred             cccccHHHHHhchhhheeeeeeecCCCC-ceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccC
Confidence                     1111223456777777654 7999999999999999653222110     00111112223 244444322


Q ss_pred             EEeeecc---ceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEE
Q 001295          561 YQGFRKR---SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI  604 (1106)
Q Consensus       561 ~~~~~~~---~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  604 (1106)
                      ..|....   .++.+.|+|+|..|+..-....|+++|+..++....+
T Consensus       265 ~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y  311 (758)
T KOG1310|consen  265 SQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY  311 (758)
T ss_pred             cccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence            2232222   2456889999988888766778999999887765544

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.61  E-value=4.9e-11  Score=122.87  Aligned_cols=144  Identities=10%  Similarity=0.048  Sum_probs=109.1

Q ss_pred             cccceEEEEEcCCCceEEEeecCc-eEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEec
Q 001295          742 RATKISRLIFTNSGNAILALASNA-IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK  820 (1106)
Q Consensus       742 ~~~~i~~~~~s~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~  820 (1106)
                      +...|.-..+..+++.++.+..|| .+-|++..                      ++.....    .+.-+.|.++..++
T Consensus       358 ~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~----------------------~~e~kr~----e~~lg~I~av~vs~  411 (668)
T COG4946         358 KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKD----------------------GGEVKRI----EKDLGNIEAVKVSP  411 (668)
T ss_pred             CCCceEEEEEccCCcceEEeccCCceEEEEecC----------------------CceEEEe----eCCccceEEEEEcC
Confidence            445566666666777788888887 77777655                      3332222    12567799999999


Q ss_pred             CCCEEEEEeC-CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCC----cEEEEEeecceEEEEecCccc
Q 001295          821 NDSYVMSASG-GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS----SIQIYNVRVDEVKSKLKGHSK  895 (1106)
Q Consensus       821 ~~~~l~~~sd-g~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg----~v~iwd~~~~~~~~~l~~h~~  895 (1106)
                      +|++++++.| ..|.+.|++++.....-+...+-|+.++|+| +++++|.+.-+|    .|++||+..++....-. ..+
T Consensus       412 dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta  489 (668)
T COG4946         412 DGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTA  489 (668)
T ss_pred             CCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecC-Ccc
Confidence            9999999984 7899999999987766666677899999999 999999988777    78999999888654432 333


Q ss_pred             CeeEEEEecCCCEEEEEc
Q 001295          896 RITGLAFSHALNVLVSSG  913 (1106)
Q Consensus       896 ~V~~l~~s~d~~~l~s~s  913 (1106)
                      .=.+-+|.||+++|.--+
T Consensus       490 ~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         490 YDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             cccCcccCCCCcEEEEEe
Confidence            345678999999887654

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.61  E-value=3.9e-12  Score=144.26  Aligned_cols=198  Identities=14%  Similarity=0.205  Sum_probs=150.4

Q ss_pred             CCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCc---CeEEEEEccCCCEE
Q 001295          351 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV---SVNRVIWSPDGSLF  427 (1106)
Q Consensus       351 ~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~---~V~~l~~spdg~~l  427 (1106)
                      +.|....+.-..+ .++.++.++.+.|||...+..+..                  +......   ...-+-++++.=++
T Consensus        88 ~wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~------------------i~~~er~~l~~~~~~g~s~~~~~i  148 (967)
T KOG0974|consen   88 DWIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSK------------------IQSDERCTLYSSLIIGDSAEELYI  148 (967)
T ss_pred             ccccccchhhhcc-eEEEEEcCceEEEEecccCceehh------------------cCCCceEEEEeEEEEeccCcEEEE
Confidence            4444455666666 488888899999999987655432                  0111111   22234467777899


Q ss_pred             EEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeE-EEeccCCCeEE
Q 001295          428 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY-IFEGHEAPVYS  506 (1106)
Q Consensus       428 as~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~h~~~v~~  506 (1106)
                      ++|+.-+.|.+|+....+...   .+.||.+.|.++.|+.||+  ++++.|+|+++++|++++++... +.-+|.+.|+.
T Consensus       149 ~~gsv~~~iivW~~~~dn~p~---~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~  223 (967)
T KOG0974|consen  149 ASGSVFGEIIVWKPHEDNKPI---RLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWA  223 (967)
T ss_pred             EeccccccEEEEeccccCCcc---eecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCcccccccceeEE
Confidence            999999999999998322111   4789999999999999999  89999999999999999988776 77789999999


Q ss_pred             EeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEEC
Q 001295          507 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD  586 (1106)
Q Consensus       507 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  586 (1106)
                      ++|++.    .+++++.|.+.++|+..-... .                    .+.+|..+.++.+...++....++++.
T Consensus       224 ~~~~~n----~i~t~gedctcrvW~~~~~~l-~--------------------~y~~h~g~~iw~~~~~~~~~~~vT~g~  278 (967)
T KOG0974|consen  224 CCFLPN----RIITVGEDCTCRVWGVNGTQL-E--------------------VYDEHSGKGIWKIAVPIGVIIKVTGGN  278 (967)
T ss_pred             EEeccc----eeEEeccceEEEEEeccccee-h--------------------hhhhhhhcceeEEEEcCCceEEEeecc
Confidence            998654    799999999999996543211 1                    344444556777777777778999999


Q ss_pred             CCeEEEEECCC
Q 001295          587 DFSIKFWDMDS  597 (1106)
Q Consensus       587 d~~i~iwd~~~  597 (1106)
                      |+.+++|++..
T Consensus       279 Ds~lk~~~l~~  289 (967)
T KOG0974|consen  279 DSTLKLWDLNG  289 (967)
T ss_pred             Ccchhhhhhhc
Confidence            99999999865

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.60  E-value=3.2e-13  Score=132.37  Aligned_cols=242  Identities=14%  Similarity=0.190  Sum_probs=169.6

Q ss_pred             CCeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeecCCC--CCeeEEEEecCCCceEE-EeeCC------CcEEEEEe
Q 001295          811 EAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPP--PAATFLAFHPQDNNIIA-IGMDD------SSIQIYNV  881 (1106)
Q Consensus       811 ~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~--~~v~~l~~s~~d~~~la-~g~~d------g~v~iwd~  881 (1106)
                      ....+++|+.|..-+++|.|...+||+.+-.+.......+.  -.+..+-|-   .++|| +|+.+      ..|.|||=
T Consensus         6 ~~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR---~N~laLVGGg~~pky~pNkviIWDD   82 (346)
T KOG2111|consen    6 PKTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFR---SNYLALVGGGSRPKYPPNKVIIWDD   82 (346)
T ss_pred             CceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhh---hceEEEecCCCCCCCCCceEEEEec
Confidence            34566999999999999999889999987644322222122  223333332   23443 44433      37999997


Q ss_pred             ecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE
Q 001295          882 RVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV  961 (1106)
Q Consensus       882 ~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~  961 (1106)
                      ...+++.++. ...+|.+|.+.+|  .|+..- .+.|.||.+...-+. ...+......    ..+.+++-..+..+||.
T Consensus        83 ~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~-l~~~et~~NP----kGlC~~~~~~~k~~Laf  153 (346)
T KOG2111|consen   83 LKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKL-LHVIETRSNP----KGLCSLCPTSNKSLLAF  153 (346)
T ss_pred             ccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhh-eeeeecccCC----CceEeecCCCCceEEEc
Confidence            6777887776 6778999999866  455554 567999999853221 1222222211    12233333334455555


Q ss_pred             -E-eCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCe-EEEEEcCCceeEEeeCCCcccCCCCCCC
Q 001295          962 -V-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT-VCVFSAANLKLRCRINPSAYLPAGVSSS 1038 (1106)
Q Consensus       962 -~-~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1106)
                       | .-|+|.|-|+...+.-......+|.+.|.|++++-+|.++||+|..|+ |||||..+|.+++.+.      .|...+
T Consensus       154 Pg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~R------RG~d~A  227 (346)
T KOG2111|consen  154 PGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELR------RGVDRA  227 (346)
T ss_pred             CCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeee------cCCchh
Confidence             4 669999999977665322334589999999999999999999999998 8999999999999876      333345


Q ss_pred             CccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCC
Q 001295         1039 NVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus      1039 ~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
                      .++  .++|+| |..+|+++|+-|+|+|+.+....
T Consensus       228 ~iy--~iaFSp-~~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  228 DIY--CIAFSP-NSSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             eEE--EEEeCC-CccEEEEEcCCCeEEEEEeecCC
Confidence            577  999999 78999999999999999998765

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=1.8e-13  Score=155.57  Aligned_cols=224  Identities=13%  Similarity=0.140  Sum_probs=148.8

Q ss_pred             cCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeCC---CeEEEEEccCCceee
Q 001295          372 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVR  448 (1106)
Q Consensus       372 dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d---~~v~iwd~~~~~~~~  448 (1106)
                      +..|.|||.......                    .+..|...|...+|||||++||.++.+   ..|++||+.+++...
T Consensus       183 ~~~i~i~d~dg~~~~--------------------~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~  242 (429)
T PRK01742        183 PYEVRVADYDGFNQF--------------------IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV  242 (429)
T ss_pred             eEEEEEECCCCCCce--------------------EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence            468999998754422                    256778889999999999999988644   479999999876432


Q ss_pred             eeeeeccccCCeeEEEEcCCCCceEEEE-ecCCCcEEEE--eCCCCceeEEEeccCCCeEEEeccccCCceEEE-EEecC
Q 001295          449 QHLEIDAHVGGVNDIAFSHPNKQLCVIT-CGDDKTIKVW--DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIF-STALD  524 (1106)
Q Consensus       449 ~~~~l~~h~~~V~~~~~s~d~~~~~l~s-~~~d~~i~iw--d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~d  524 (1106)
                       +..+.+|   ...++|+|||+.  |+. .+.+|.+.||  |+.++. ...+..+...+....|+++  |+.|+ +...+
T Consensus       243 -l~~~~g~---~~~~~wSPDG~~--La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpD--G~~i~f~s~~~  313 (429)
T PRK01742        243 -VASFRGH---NGAPAFSPDGSR--LAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPD--GQSILFTSDRS  313 (429)
T ss_pred             -EecCCCc---cCceeECCCCCE--EEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCC--CCEEEEEECCC
Confidence             2234444   446899999994  544 4567766555  665555 4566667777888888655  45555 44467


Q ss_pred             CeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEE
Q 001295          525 GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI  604 (1106)
Q Consensus       525 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  604 (1106)
                      |...+|+++..........+..                       ....|+|+|++++..+.++ +.+||+.+++.....
T Consensus       314 g~~~I~~~~~~~~~~~~l~~~~-----------------------~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt  369 (429)
T PRK01742        314 GSPQVYRMSASGGGASLVGGRG-----------------------YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLS  369 (429)
T ss_pred             CCceEEEEECCCCCeEEecCCC-----------------------CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEec
Confidence            8889998764322211111111                       1234666667787777655 566999888765332


Q ss_pred             ccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEcc--CCchhhhhhcccc
Q 001295          605 DADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS--DGIRLLRTFENLA  653 (1106)
Q Consensus       605 ~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~  653 (1106)
                      ...    ....+.|+|||++|+.++.++.+.+|++.  ++ ...+.+..|.
T Consensus       370 ~~~----~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G-~~~~~l~~~~  415 (429)
T PRK01742        370 STF----LDESPSISPNGIMIIYSSTQGLGKVLQLVSADG-RFKARLPGSD  415 (429)
T ss_pred             CCC----CCCCceECCCCCEEEEEEcCCCceEEEEEECCC-CceEEccCCC
Confidence            221    23568899999999999999999888763  34 4455554443

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.57  E-value=2e-12  Score=141.42  Aligned_cols=322  Identities=14%  Similarity=0.121  Sum_probs=194.2

Q ss_pred             ceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEE
Q 001295          471 QLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTT  550 (1106)
Q Consensus       471 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  550 (1106)
                      .+++++-..++.|.|.|..+.+.+.++......-..+.+  ++||+++++++.||.|.++|+.+.+.+..+... ....+
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~--s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~   82 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKF--SPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRG   82 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE---TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEe--cCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcce
Confidence            345677788999999999999999999865443333454  566688999999999999999998876666543 33456


Q ss_pred             EEEecCCCeEEEeeeccceeEEEEcCCCCEEEEE-ECCCeEEEEECCCcceeEEEccCCC-----CCCcCeEEEccCCCE
Q 001295          551 MAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA-GDDFSIKFWDMDSVQLLTSIDADGG-----LPASPRIRFNKDGCL  624 (1106)
Q Consensus       551 ~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~-----~~~v~~v~~s~~~~~  624 (1106)
                      +++++||+                     +++++ ..++.+.++|..+.+.++.+...+.     ...+..+..++....
T Consensus        83 i~~s~DG~---------------------~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~  141 (369)
T PF02239_consen   83 IAVSPDGK---------------------YVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPE  141 (369)
T ss_dssp             EEE--TTT---------------------EEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSE
T ss_pred             EEEcCCCC---------------------EEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCE
Confidence            66666665                     66655 4789999999999999988754321     224566777888776


Q ss_pred             EEEEeC-CCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCcccc
Q 001295          625 LAVSTN-DNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSL  703 (1106)
Q Consensus       625 l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  703 (1106)
                      ++..-. .+.|.+.|..+......                                                        
T Consensus       142 fVv~lkd~~~I~vVdy~d~~~~~~--------------------------------------------------------  165 (369)
T PF02239_consen  142 FVVNLKDTGEIWVVDYSDPKNLKV--------------------------------------------------------  165 (369)
T ss_dssp             EEEEETTTTEEEEEETTTSSCEEE--------------------------------------------------------
T ss_pred             EEEEEccCCeEEEEEeccccccce--------------------------------------------------------
Confidence            655554 46776666544311000                                                        


Q ss_pred             CCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeec-CceEEEeeccccccCCCCc
Q 001295          704 ADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS-NAIHLLWKWQRTERNSSGK  782 (1106)
Q Consensus       704 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~  782 (1106)
                                     +..+                   .........|+|++++++++.. ...+-++|......     
T Consensus       166 ---------------~~i~-------------------~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~-----  206 (369)
T PF02239_consen  166 ---------------TTIK-------------------VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL-----  206 (369)
T ss_dssp             ---------------EEEE---------------------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE-----
T ss_pred             ---------------eeec-------------------ccccccccccCcccceeeecccccceeEEEeeccceE-----
Confidence                           0000                   1223456789999998877654 57787887654321     


Q ss_pred             cccccCccccCCCCCCccccccCCCCCCCCeeEE---------EEecCCCEEEEE-eCCeEEEEEcCCCceeeeecCCCC
Q 001295          783 ATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF---------ALSKNDSYVMSA-SGGKISLFNMMTFKTMATFMPPPP  852 (1106)
Q Consensus       783 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l---------~~s~~~~~l~~~-sdg~i~vwd~~~~~~~~~~~~~~~  852 (1106)
                              +..+..|..        .|..+...+         +....+...++. +.+.+.+|+..+++.++++.....
T Consensus       207 --------v~~i~~g~~--------p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~  270 (369)
T PF02239_consen  207 --------VALIDTGKK--------PHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGG  270 (369)
T ss_dssp             --------EEEEE-SSS--------BEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSS
T ss_pred             --------EEEeecccc--------ccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCC
Confidence                    111111111        011122111         112233333222 245677899999999999987766


Q ss_pred             CeeEEEEecCCCceEEEe----eCCCcEEEEEeecceEEEEecCcc-cCeeEEEEecCCCEEEEEcCC--CcEEEEeCCC
Q 001295          853 AATFLAFHPQDNNIIAIG----MDDSSIQIYNVRVDEVKSKLKGHS-KRITGLAFSHALNVLVSSGAD--SQLCVWSSDG  925 (1106)
Q Consensus       853 ~v~~l~~s~~d~~~la~g----~~dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~~s~d~~~l~s~s~D--g~i~vwd~~~  925 (1106)
                      . ..+..+| +++++.+.    ...++|.++|..+.+.+.++.... ..+..+.|++||+.+..+..+  +.|.|||..+
T Consensus       271 g-lFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~T  348 (369)
T PF02239_consen  271 G-LFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKT  348 (369)
T ss_dssp             S---EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTT
T ss_pred             c-ceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCC
Confidence            6 8888899 88888887    456899999999998888875433 358899999999976655444  3699999999


Q ss_pred             cccc
Q 001295          926 WEKQ  929 (1106)
Q Consensus       926 ~~~~  929 (1106)
                      .+..
T Consensus       349 l~~~  352 (369)
T PF02239_consen  349 LKEK  352 (369)
T ss_dssp             TEEE
T ss_pred             cEEE
Confidence            6643

...

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=2e-13  Score=155.25  Aligned_cols=220  Identities=13%  Similarity=0.119  Sum_probs=143.9

Q ss_pred             eeccCCCCcEEEEEecCCCeEEEEEecc---CcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEc
Q 001295          345 RTLNQGSSPMSMDFHPVQQTLLLVGTNV---GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  421 (1106)
Q Consensus       345 ~~~~h~~~v~~~~~sp~g~~llatg~~d---g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s  421 (1106)
                      .+..|...+...+|||||++ |+..+.+   ..|.+||+.+++.....                 .+.+|   ...++||
T Consensus       198 ~lt~~~~~v~~p~wSPDG~~-la~~s~~~~~~~i~i~dl~tg~~~~l~-----------------~~~g~---~~~~~wS  256 (429)
T PRK01742        198 IVNRSSQPLMSPAWSPDGSK-LAYVSFENKKSQLVVHDLRSGARKVVA-----------------SFRGH---NGAPAFS  256 (429)
T ss_pred             EeccCCCccccceEcCCCCE-EEEEEecCCCcEEEEEeCCCCceEEEe-----------------cCCCc---cCceeEC
Confidence            34457888999999999997 4554433   36999999887643210                 12333   3468999


Q ss_pred             cCCCEEEEEe-CCCeEEEE--EccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCC-CceeEEE
Q 001295          422 PDGSLFGVAY-SRHIVQIY--SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-GAKQYIF  497 (1106)
Q Consensus       422 pdg~~las~~-~d~~v~iw--d~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~  497 (1106)
                      |||++|+.++ .+|.+.||  |+.+++..    .+..|...+....|+|||+. +++++..++...||++.. +.....+
T Consensus       257 PDG~~La~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~wSpDG~~-i~f~s~~~g~~~I~~~~~~~~~~~~l  331 (429)
T PRK01742        257 PDGSRLAFASSKDGVLNIYVMGANGGTPS----QLTSGAGNNTEPSWSPDGQS-ILFTSDRSGSPQVYRMSASGGGASLV  331 (429)
T ss_pred             CCCCEEEEEEecCCcEEEEEEECCCCCeE----eeccCCCCcCCEEECCCCCE-EEEEECCCCCceEEEEECCCCCeEEe
Confidence            9999998865 67766555  66665532    35667778899999999995 344555678888887653 2223333


Q ss_pred             eccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCC
Q 001295          498 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT  577 (1106)
Q Consensus       498 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~  577 (1106)
                       .+..  ....|+  ++|+.|+..+.++ +.+||+.++........  ....                     ...|+|+
T Consensus       332 -~~~~--~~~~~S--pDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~---------------------~~~~sPd  382 (429)
T PRK01742        332 -GGRG--YSAQIS--ADGKTLVMINGDN-VVKQDLTSGSTEVLSST--FLDE---------------------SPSISPN  382 (429)
T ss_pred             -cCCC--CCccCC--CCCCEEEEEcCCC-EEEEECCCCCeEEecCC--CCCC---------------------CceECCC
Confidence             3433  345564  4557888777765 55589876543321111  1111                     2446666


Q ss_pred             CCEEEEEECCCeEEEEEC--CCcceeEEEccCCCCCCcCeEEEccC
Q 001295          578 KNRFLAAGDDFSIKFWDM--DSVQLLTSIDADGGLPASPRIRFNKD  621 (1106)
Q Consensus       578 ~~~l~~~~~d~~i~iwd~--~~~~~~~~~~~~~~~~~v~~v~~s~~  621 (1106)
                      |++++.++.++.+.+|.+  .+|+.+..+..+.  ..+...+|+|-
T Consensus       383 G~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~--g~~~~p~wsp~  426 (429)
T PRK01742        383 GIMIIYSSTQGLGKVLQLVSADGRFKARLPGSD--GQVKFPAWSPY  426 (429)
T ss_pred             CCEEEEEEcCCCceEEEEEECCCCceEEccCCC--CCCCCcccCCC
Confidence            678998888888888775  3577777776553  35788899883

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.55  E-value=6.1e-13  Score=130.41  Aligned_cols=242  Identities=15%  Similarity=0.140  Sum_probs=180.2

Q ss_pred             CCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCC---ceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeec-
Q 001295          809 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTF---KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-  883 (1106)
Q Consensus       809 ~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~---~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~-  883 (1106)
                      ...+|+|.+|++|+..+|++. ...|.||.....   +..+++..|...|+.|+|+| ....|++++.|..-+||...+ 
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~~~~   87 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQPSG   87 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccccCCC
Confidence            467899999999999999998 578999988754   46788999999999999999 888999999999999999833 


Q ss_pred             --ceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE
Q 001295          884 --DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV  961 (1106)
Q Consensus       884 --~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~  961 (1106)
                        .+..-.+..|...+++|.|+|.++.+|+||.-..|.||-++.... -.....+..   +....|.++.|.|++-+|++
T Consensus        88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENd-WWVsKhikk---PirStv~sldWhpnnVLlaa  163 (361)
T KOG1523|consen   88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEND-WWVSKHIKK---PIRSTVTSLDWHPNNVLLAA  163 (361)
T ss_pred             CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccc-eehhhhhCC---ccccceeeeeccCCcceecc
Confidence              345556667899999999999999999999999999998765221 111111111   12257899999999999999


Q ss_pred             -EeCCeEEEEecC-----C-------------ceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCcee-
Q 001295          962 -VHETQLAIFETT-----K-------------LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL- 1021 (1106)
Q Consensus       962 -~~d~~v~i~d~~-----~-------------~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~- 1021 (1106)
                       +.|+..+||..-     .             |+.+.++.  ...+.|..+.|+|+|..|+-.+.|++|.+=|...... 
T Consensus       164 Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~--~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~  241 (361)
T KOG1523|consen  164 GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS--SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSER  241 (361)
T ss_pred             cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc--cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchh
Confidence             589998888641     1             12222232  3367899999999999999999999999999877653 


Q ss_pred             EEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEee
Q 001295         1022 RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1069 (1106)
Q Consensus      1022 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~ 1069 (1106)
                      ...+. ..++|-         +++.|..  .+.++.++.|..=.++..
T Consensus       242 v~~~~-~~~lP~---------ls~~~is--e~~vv~ag~~c~P~lf~~  277 (361)
T KOG1523|consen  242 VQSVA-TAQLPL---------LSVSWIS--ENSVVAAGYDCGPVLFVT  277 (361)
T ss_pred             ccchh-hccCCc---------eeeEeec--CCceeecCCCCCceEEEe
Confidence            22222 222442         2566665  356666666654444433

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.52  E-value=6.7e-12  Score=124.97  Aligned_cols=289  Identities=12%  Similarity=0.134  Sum_probs=180.7

Q ss_pred             CccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccc
Q 001295          707 KPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATAS  786 (1106)
Q Consensus       707 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~  786 (1106)
                      ..++++..|..|++|+-.. .....++      ......|++++|-|.+...++.+-.+.|.+|..+........     
T Consensus       111 ~~fava~nddvVriy~kss-t~pt~Lk------s~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~-----  178 (445)
T KOG2139|consen  111 IAFAVATNDDVVRIYDKSS-TCPTKLK------SVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRN-----  178 (445)
T ss_pred             hhhhhhccCcEEEEeccCC-CCCceec------chhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccc-----
Confidence            4578889999999999776 2222222      225678999999998776666666778999987643211000     


Q ss_pred             cCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCC
Q 001295          787 VAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDN  864 (1106)
Q Consensus       787 ~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~  864 (1106)
                        ++  -..+..  ...+++.+| ..|+++.+.+||..+++++  |..|.|||.+++..+.......+.++-+.||| |+
T Consensus       179 --~~--~~s~~~--~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dg  250 (445)
T KOG2139|consen  179 --IR--MMSTHH--LQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DG  250 (445)
T ss_pred             --cc--cccccc--hhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CC
Confidence              00  000111  111222234 7899999999999999998  68899999999887766645567799999999 89


Q ss_pred             ceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccc--c--------ce--
Q 001295          865 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQ--K--------NR--  932 (1106)
Q Consensus       865 ~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~--~--------~~--  932 (1106)
                      .+|..++-|+..++|+.....-.....-.++.|..-+|+|+|++|..+... .-++|.+.-....  .        ..  
T Consensus       251 d~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sg-sp~lysl~f~~~~~~~~~~~~~k~~lli  329 (445)
T KOG2139|consen  251 DVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSG-SPRLYSLTFDGEDSVFLRPQSIKRVLLI  329 (445)
T ss_pred             CEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcC-CceEEEEeecCCCccccCcccceeeeee
Confidence            999999999999999544322222333345589999999999876544322 2344443221100  0        00  


Q ss_pred             ----eecccCCCCCCCCCCceEEEcCCCcEEEEEeCC---------eEEEEecCCceEeeecccCC-CCCCeeEEEECC-
Q 001295          933 ----FLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET---------QLAIFETTKLECVKQWVPRE-SSAPITHATFSC-  997 (1106)
Q Consensus       933 ----~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~---------~v~i~d~~~~~~~~~~~~~~-h~~~v~~l~~s~-  997 (1106)
                          ...+..+....-+.+.+++|.|.|.+||+...+         .|.+||....-.+....++. .......|+|.| 
T Consensus       330 aDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl  409 (445)
T KOG2139|consen  330 ADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPL  409 (445)
T ss_pred             ccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeec
Confidence                011112222223567899999999999995322         35667776554433321110 122355666665 


Q ss_pred             --CCCEEEEEEcCCeEEEEEc
Q 001295          998 --DSQLVYACFLDATVCVFSA 1016 (1106)
Q Consensus       998 --d~~~l~t~s~Dg~i~vwd~ 1016 (1106)
                        ++.+|..+=..|.+.-|++
T Consensus       410 ~n~g~lLsiaWsTGriq~ypl  430 (445)
T KOG2139|consen  410 KNEGRLLSIAWSTGRIQRYPL  430 (445)
T ss_pred             ccCCcEEEEEeccCceEeeee
Confidence              5666666655666666654

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.52  E-value=1.6e-12  Score=129.36  Aligned_cols=256  Identities=16%  Similarity=0.182  Sum_probs=168.9

Q ss_pred             CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc-CCCEE
Q 001295          349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLF  427 (1106)
Q Consensus       349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l  427 (1106)
                      ..-.+..++|++.-- -+|++..|-.|+|||-.. +....                  +-..-...|+|++|-| .++-|
T Consensus        97 s~~dlr~~aWhqH~~-~fava~nddvVriy~kss-t~pt~------------------Lks~sQrnvtclawRPlsasel  156 (445)
T KOG2139|consen   97 SEIDLRGVAWHQHII-AFAVATNDDVVRIYDKSS-TCPTK------------------LKSVSQRNVTCLAWRPLSASEL  156 (445)
T ss_pred             hhcceeeEeechhhh-hhhhhccCcEEEEeccCC-CCCce------------------ecchhhcceeEEEeccCCccee
Confidence            345678899999554 378889999999999765 22111                  1123355899999999 55677


Q ss_pred             EEEeCCCeEEEEEccCCcee-----------eeeeeeccccCCeeEEEEcCCCCceEEEEec-CCCcEEEEeCCCCceeE
Q 001295          428 GVAYSRHIVQIYSYHGGDEV-----------RQHLEIDAHVGGVNDIAFSHPNKQLCVITCG-DDKTIKVWDATNGAKQY  495 (1106)
Q Consensus       428 as~~~d~~v~iwd~~~~~~~-----------~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~-~d~~i~iwd~~~~~~~~  495 (1106)
                      ++|+..| |.||.....-..           .++....|| .+|+++.|.+||.  .+++++ .|..|.|||..++..+.
T Consensus       157 avgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~p  232 (445)
T KOG2139|consen  157 AVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIP  232 (445)
T ss_pred             eeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCccc
Confidence            7787766 999987531111           122234466 6899999999999  677776 57889999999998776


Q ss_pred             EEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeec-cceeEEEE
Q 001295          496 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK-RSLGVVQF  574 (1106)
Q Consensus       496 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~-~~i~~~~~  574 (1106)
                      -..-..+.+.-+.|+|+.  .+|+++.-|+..++|...............+.|..-+|+|+|+.++..... ..+..+.|
T Consensus       233 L~~~glgg~slLkwSPdg--d~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f  310 (445)
T KOG2139|consen  233 LIPKGLGGFSLLKWSPDG--DVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTF  310 (445)
T ss_pred             ccccCCCceeeEEEcCCC--CEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEee
Confidence            554456778888986655  689999999999999655443333344445588999999999876554433 34445555


Q ss_pred             cCCCCEEE-EEECCCeEEEEECCCcceeEEEccC-CCCCCcCeEEEccCCCEEEEEeCCCc
Q 001295          575 DTTKNRFL-AAGDDFSIKFWDMDSVQLLTSIDAD-GGLPASPRIRFNKDGCLLAVSTNDNG  633 (1106)
Q Consensus       575 ~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~~dg~  633 (1106)
                      ......+. .++....+-+-|+..-.   ...+. --.+...+++|.|.|.+|++....+.
T Consensus       311 ~~~~~~~~~~~~~k~~lliaDL~e~t---i~ag~~l~cgeaq~lawDpsGeyLav~fKg~~  368 (445)
T KOG2139|consen  311 DGEDSVFLRPQSIKRVLLIADLQEVT---ICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS  368 (445)
T ss_pred             cCCCccccCcccceeeeeeccchhhh---hhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence            54433332 23333333344432111   11110 00235788999999999999876543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.51  E-value=1.6e-11  Score=132.37  Aligned_cols=548  Identities=11%  Similarity=0.104  Sum_probs=310.5

Q ss_pred             CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEE
Q 001295          349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  428 (1106)
Q Consensus       349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  428 (1106)
                      .+....|++|+....| +|+|+.||.++|-.+.+...-...    --+...+.-....++.||.+.|.-+.|+.+.+.|-
T Consensus        13 nnvkL~c~~WNke~gy-IAcgG~dGlLKVlKl~t~t~d~~~----~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLT   87 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGY-IACGGADGLLKVLKLGTDTTDLNK----SGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLT   87 (1189)
T ss_pred             CCceEEEEEEcccCCe-EEeccccceeEEEEccccCCcccc----cccccccccchhhhhccCcceEEEEEecccccccc
Confidence            4567889999999986 999999999999988764322110    00112222234457899999999999999999999


Q ss_pred             EEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCcee-EEEeccCCCeEEE
Q 001295          429 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ-YIFEGHEAPVYSV  507 (1106)
Q Consensus       429 s~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~h~~~v~~~  507 (1106)
                      +...+|.|.||-+-.|...... .-......|.+++|+.||.  .+.....||.|.|=.++..+.- +.+++.  ....+
T Consensus        88 tSDt~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv  162 (1189)
T KOG2041|consen   88 TSDTSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHV  162 (1189)
T ss_pred             ccCCCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcchh--eccce
Confidence            9999999999999887765432 1234567899999999999  5777778888876665433211 122221  12245


Q ss_pred             eccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCe-eEEE-EEecCCCeEEEeeeccceeEEEEcCCCCEEEEEE
Q 001295          508 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW-CTTM-AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG  585 (1106)
Q Consensus       508 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~-~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  585 (1106)
                      .|+++  ...++.+-..|.+.++|....-..   +.+... |+.- .++.-+.+ +.++....-...-.-|+...++.+-
T Consensus       163 ~ws~D--~~~~Lf~~ange~hlydnqgnF~~---Kl~~~c~Vn~tg~~s~~~~k-ia~i~w~~g~~~~v~pdrP~lavcy  236 (1189)
T KOG2041|consen  163 LWSED--LEQALFKKANGETHLYDNQGNFER---KLEKDCEVNGTGIFSNFPTK-IAEIEWNTGPYQPVPPDRPRLAVCY  236 (1189)
T ss_pred             eeccc--HHHHHhhhcCCcEEEecccccHHH---hhhhceEEeeeeeecCCCcc-ccceeeccCccccCCCCCCEEEEEE
Confidence            56444  366777778899999987532111   111111 1111 12222221 1111111111122346778899999


Q ss_pred             CCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCC
Q 001295          586 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKP  665 (1106)
Q Consensus       586 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  665 (1106)
                      ..|.+.+-.-.+...-..+...   -.+....|+++|..|++++.+..-.- +..+.  .+.                  
T Consensus       237 ~nGr~QiMR~eND~~Pvv~dtg---m~~vgakWnh~G~vLAvcG~~~da~~-~~d~n--~v~------------------  292 (1189)
T KOG2041|consen  237 ANGRMQIMRSENDPEPVVVDTG---MKIVGAKWNHNGAVLAVCGNDSDADE-PTDSN--KVH------------------  292 (1189)
T ss_pred             cCceehhhhhcCCCCCeEEecc---cEeecceecCCCcEEEEccCcccccC-ccccc--eEE------------------
Confidence            9999888754443322222211   25778999999999999887532100 00000  000                  


Q ss_pred             CcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccc
Q 001295          666 TISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK  745 (1106)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~  745 (1106)
                      -++++|                                                          .....+..    ....
T Consensus       293 Fysp~G----------------------------------------------------------~i~gtlkv----pg~~  310 (1189)
T KOG2041|consen  293 FYSPYG----------------------------------------------------------HIVGTLKV----PGSC  310 (1189)
T ss_pred             Eeccch----------------------------------------------------------hheEEEec----CCce
Confidence            011111                                                          00011111    2244


Q ss_pred             eEEEEEcCCCceEEEeecCceEEEeecccc----------ccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeE
Q 001295          746 ISRLIFTNSGNAILALASNAIHLLWKWQRT----------ERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC  815 (1106)
Q Consensus       746 i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~----------~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~  815 (1106)
                      |++++|-..|-.++.+ -|+.|.+=+++..          .+--.+.......+.+||..+.+....      .-....+
T Consensus       311 It~lsWEg~gLriA~A-vdsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK------~V~~~~~  383 (1189)
T KOG2041|consen  311 ITGLSWEGTGLRIAIA-VDSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVK------TVTHFEN  383 (1189)
T ss_pred             eeeeEEcCCceEEEEE-ecceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhh------hhcceee
Confidence            5555555554433322 2333333222211          000111222333566788777653332      1223456


Q ss_pred             EEEecCCCEEEEEe-CCeEEEEEc-CCCceeeeec-----C--CCCCeeEE--EEecCCCceEEEeeCCCcEEEEEeecc
Q 001295          816 FALSKNDSYVMSAS-GGKISLFNM-MTFKTMATFM-----P--PPPAATFL--AFHPQDNNIIAIGMDDSSIQIYNVRVD  884 (1106)
Q Consensus       816 l~~s~~~~~l~~~s-dg~i~vwd~-~~~~~~~~~~-----~--~~~~v~~l--~~s~~d~~~la~g~~dg~v~iwd~~~~  884 (1106)
                      +++..+--.|+.-. +|.|.-++. ++...+..+.     +  -....+.+  .|-..++.+++.++.+ .+.+|.....
T Consensus       384 ~a~~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e-~~~iWhy~~p  462 (1189)
T KOG2041|consen  384 MAFYREHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEE-RYFIWHYVLP  462 (1189)
T ss_pred             hheecccEEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEeccc-cEEEEEEecc
Confidence            77766655555555 566655432 1211111110     0  01111111  1221256677777765 6788876321


Q ss_pred             e--------------------------------EEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccce
Q 001295          885 E--------------------------------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNR  932 (1106)
Q Consensus       885 ~--------------------------------~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~  932 (1106)
                      +                                -..++.|..++|.+++.+  .++|..+-..|.|.-|.+.+...... 
T Consensus       463 K~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n~-  539 (1189)
T KOG2041|consen  463 KFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTNS-  539 (1189)
T ss_pred             chhhhhhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeeeec-
Confidence            1                                013455677888888886  57888899999999999987432111 


Q ss_pred             eecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEecC---CceEeeecccCCCCCCeeEEEECCCCCEEEEEEcC
Q 001295          933 FLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETT---KLECVKQWVPRESSAPITHATFSCDSQLVYACFLD 1008 (1106)
Q Consensus       933 ~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d~~---~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~D 1008 (1106)
                              .+.+..+.+++.+-+...+|+ -.-|.+.+.|+.   +++.+..+.. .....|+.+.|..|+..|++-.+-
T Consensus       540 --------y~~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~-~errDVWd~~Wa~dNp~llAlmeK  610 (1189)
T KOG2041|consen  540 --------YPVNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYT-SERRDVWDYEWAQDNPNLLALMEK  610 (1189)
T ss_pred             --------cccCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeeh-hhhhhhhhhhhccCCchHHhhhhh
Confidence                    112246788888888888887 466778887775   3444443321 236789999999988877766666


Q ss_pred             CeEEEEEcCC
Q 001295         1009 ATVCVFSAAN 1018 (1106)
Q Consensus      1009 g~i~vwd~~~ 1018 (1106)
                      ..++|++-.+
T Consensus       611 trmyifrgnd  620 (1189)
T KOG2041|consen  611 TRMYIFRGND  620 (1189)
T ss_pred             ceEEEecCcC
Confidence            6788887543

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.51  E-value=1.2e-12  Score=137.89  Aligned_cols=260  Identities=13%  Similarity=0.131  Sum_probs=177.4

Q ss_pred             ceeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEc
Q 001295          342 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  421 (1106)
Q Consensus       342 ~~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s  421 (1106)
                      ++.+-+.|....+.+..||||+|++|||..--.|++||+..-.....+.                   -....|.-.-+|
T Consensus        43 eLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERh-------------------lDae~V~feiLs  103 (703)
T KOG2321|consen   43 ELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERH-------------------LDAEVVDFEILS  103 (703)
T ss_pred             HHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeec-------------------ccccceeEEEec
Confidence            3556677889999999999999999999999999999998654433211                   112345555566


Q ss_pred             cCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccC
Q 001295          422 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE  501 (1106)
Q Consensus       422 pdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~  501 (1106)
                      -|-..++.-..|.+|-+..--+ ...    .+. -...-..++++.-.-.  |..++....|+-.+++.|+.+..|....
T Consensus       104 DD~SK~v~L~~DR~IefHak~G-~hy----~~R-IP~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~~  175 (703)
T KOG2321|consen  104 DDYSKSVFLQNDRTIEFHAKYG-RHY----RTR-IPKFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETDS  175 (703)
T ss_pred             cchhhheEeecCceeeehhhcC-eee----eee-cCcCCccccccCCCcc--EEEeecCcceEEEEcccccccccccccc
Confidence            6666677777788776654322 111    011 0112244555544442  3444445678999999999999998888


Q ss_pred             CCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEE
Q 001295          502 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF  581 (1106)
Q Consensus       502 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l  581 (1106)
                      +.++++.+++..  .+|++|+.+|.|-+||.+.......+..... |.+....         .....++.+.|+.+|-.+
T Consensus       176 ~~lN~v~in~~h--gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~-v~s~pg~---------~~~~svTal~F~d~gL~~  243 (703)
T KOG2321|consen  176 GELNVVSINEEH--GLLACGTEDGVVEFWDPRDKSRVGTLDAASS-VNSHPGG---------DAAPSVTALKFRDDGLHV  243 (703)
T ss_pred             ccceeeeecCcc--ceEEecccCceEEEecchhhhhheeeecccc-cCCCccc---------cccCcceEEEecCCceeE
Confidence            999999876543  5888888899999999998766655543322 1111111         111246667777777789


Q ss_pred             EEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccC--CCEEEEEeCCCcEEEEEccCC
Q 001295          582 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD--GCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       582 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~--~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                      ++|..+|.|.|||+++.+++..-. |....+|..+.|.+.  +..+++. +...++|||-.+|
T Consensus       244 aVGts~G~v~iyDLRa~~pl~~kd-h~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~G  304 (703)
T KOG2321|consen  244 AVGTSTGSVLIYDLRASKPLLVKD-HGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTG  304 (703)
T ss_pred             EeeccCCcEEEEEcccCCceeecc-cCCccceeeecccccCCCceEEec-chHHhhhcccccC
Confidence            999999999999999998876654 444457889999774  3444443 4478899998877

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.49  E-value=4.3e-13  Score=140.16  Aligned_cols=154  Identities=19%  Similarity=0.287  Sum_probs=116.4

Q ss_pred             CCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEE---------eeee--eeccCcCCccccccccCCCCcCeEEE
Q 001295          350 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL---------RNFK--VWDLGACSMPLQAALVKDPGVSVNRV  418 (1106)
Q Consensus       350 ~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~---------~~~~--~~d~~~~~~~~~~~~~~~h~~~V~~l  418 (1106)
                      +..|+|+.|-|-++.++...-.+|.+.++|..-.-....         ..|.  .+.-.....|..  -+.--++.|...
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~--~w~~~~g~in~f  296 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVA--RWHIGEGSINEF  296 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccc--eeEeccccccce
Confidence            478999999998887777778899999997632110000         0011  111110001111  122224589999


Q ss_pred             EEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEe
Q 001295          419 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE  498 (1106)
Q Consensus       419 ~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  498 (1106)
                      +|||||++||+.+.||.++|+|..+.+.+.   .++.--+...|++|||||+  +|++|++|--|.||.+..++.+..-+
T Consensus       297 ~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg---~mkSYFGGLLCvcWSPDGK--yIvtGGEDDLVtVwSf~erRVVARGq  371 (636)
T KOG2394|consen  297 AFSPDGKYLATVSQDGFLRIFDFDTQELLG---VMKSYFGGLLCVCWSPDGK--YIVTGGEDDLVTVWSFEERRVVARGQ  371 (636)
T ss_pred             eEcCCCceEEEEecCceEEEeeccHHHHHH---HHHhhccceEEEEEcCCcc--EEEecCCcceEEEEEeccceEEEecc
Confidence            999999999999999999999999977655   3444557899999999999  89999999999999999999999999


Q ss_pred             ccCCCeEEEecc
Q 001295          499 GHEAPVYSVCPH  510 (1106)
Q Consensus       499 ~h~~~v~~~~~~  510 (1106)
                      ||...|..++|.
T Consensus       372 GHkSWVs~VaFD  383 (636)
T KOG2394|consen  372 GHKSWVSVVAFD  383 (636)
T ss_pred             ccccceeeEeec
Confidence            999999999986

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.49  E-value=1.2e-12  Score=136.84  Aligned_cols=217  Identities=14%  Similarity=0.184  Sum_probs=150.9

Q ss_pred             CCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCc-eEEEeecCceEEEeeccccc--cCCC
Q 001295          704 ADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGN-AILALASNAIHLLWKWQRTE--RNSS  780 (1106)
Q Consensus       704 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~--~~~~  780 (1106)
                      +++-.++.|-..|.+.+.+........   .+..........++++.|-|.+. .++++-.+|.+++||.....  ..+.
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sk---lfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~  259 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSK---LFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPS  259 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHH---hhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCc
Confidence            445556677777777777765411111   11111122457899999988654 45666668999999864321  1111


Q ss_pred             Ccccccc---CccccCCCCC-CccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCee
Q 001295          781 GKATASV---APQLWQPPSG-IMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAAT  855 (1106)
Q Consensus       781 ~~~~~~~---~~~~w~~~~~-~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~  855 (1106)
                      .......   .+..|-.... ..+.....   -...|..++|+|||++||+.+ ||.+||||..+.+++..++.--+...
T Consensus       260 ~~~~k~~~~f~i~t~ksk~~rNPv~~w~~---~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLL  336 (636)
T KOG2394|consen  260 YQALKDGDQFAILTSKSKKTRNPVARWHI---GEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLL  336 (636)
T ss_pred             ccccCCCCeeEEeeeeccccCCccceeEe---ccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceE
Confidence            1111100   1111111111 11111111   245788999999999999999 99999999999888877776677899


Q ss_pred             EEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEec-------------------------------
Q 001295          856 FLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH-------------------------------  904 (1106)
Q Consensus       856 ~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~-------------------------------  904 (1106)
                      |++||| ||+||++|++|.-|.||.+...+++..-+||..-|..|+|.|                               
T Consensus       337 CvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~  415 (636)
T KOG2394|consen  337 CVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANG  415 (636)
T ss_pred             EEEEcC-CccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCC
Confidence            999999 999999999999999999999999999999999999999972                               


Q ss_pred             C----C-------------CEEEEEcCCCcEEEEeCCCcc
Q 001295          905 A----L-------------NVLVSSGADSQLCVWSSDGWE  927 (1106)
Q Consensus       905 d----~-------------~~l~s~s~Dg~i~vwd~~~~~  927 (1106)
                      +    +             -.+.|++.|..+.+||+....
T Consensus       416 ~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~  455 (636)
T KOG2394|consen  416 TGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDV  455 (636)
T ss_pred             CCCcCCCcccccccccceEEEeecccccceEEEEecchhh
Confidence            0    1             157789999999999997643

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.48  E-value=1.4e-13  Score=141.09  Aligned_cols=232  Identities=12%  Similarity=0.112  Sum_probs=184.8

Q ss_pred             CCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEE
Q 001295          810 EEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS  888 (1106)
Q Consensus       810 ~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~  888 (1106)
                      ......+.++.+|++|+.|+ .|.|..+|..++++...+. -...|..+.|-. +.+++|++ ....++||| ..|..+.
T Consensus       129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LH-neq~~AVA-QK~y~yvYD-~~GtElH  204 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLH-NEQFFAVA-QKKYVYVYD-NNGTELH  204 (545)
T ss_pred             ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhc-chHHHHhh-hhceEEEec-CCCcEEe
Confidence            44567899999999999998 7999999999999888876 345688999988 78888876 567999999 5577788


Q ss_pred             EecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeE
Q 001295          889 KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQL  967 (1106)
Q Consensus       889 ~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v  967 (1106)
                      .++.|. .|..|.|-|-.-+|++++..|.++.-|+.+|+....  +...      .+.+..+.-+|-+-.+-+| ..|+|
T Consensus       205 Clk~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~--~~t~------~G~~~vm~qNP~NaVih~GhsnGtV  275 (545)
T KOG1272|consen  205 CLKRHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVAS--IRTG------AGRTDVMKQNPYNAVIHLGHSNGTV  275 (545)
T ss_pred             ehhhcC-chhhhcccchhheeeecccCCceEEEeechhhhhHH--HHcc------CCccchhhcCCccceEEEcCCCceE
Confidence            888765 489999999999999999999999999999875332  1111      1356778888988888886 78999


Q ss_pred             EEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEE
Q 001295          968 AIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAA 1047 (1106)
Q Consensus       968 ~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 1047 (1106)
                      .+|.....+.+..+.  .|.++|.+|++.++|+|+||++.|..++|||+.....+..+.    .|++     ..  .+++
T Consensus       276 SlWSP~skePLvKiL--cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~----tp~~-----a~--~ls~  342 (545)
T KOG1272|consen  276 SLWSPNSKEPLVKIL--CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYR----TPHP-----AS--NLSL  342 (545)
T ss_pred             EecCCCCcchHHHHH--hcCCCcceEEECCCCcEEeecccccceeEeeeccccccceee----cCCC-----cc--cccc
Confidence            999999888776665  789999999999999999999999999999999887665554    2332     22  4667


Q ss_pred             eCCCCCEEEEEeCCCcEEEEeec
Q 001295         1048 HPQEPNEFALGLSDGGVHVFEPL 1070 (1106)
Q Consensus      1048 ~~~d~~~l~t~~~Dg~v~vW~~~ 1070 (1106)
                      |.  ..+| +.+.-..|.+|.=.
T Consensus       343 Sq--kglL-A~~~G~~v~iw~d~  362 (545)
T KOG1272|consen  343 SQ--KGLL-ALSYGDHVQIWKDA  362 (545)
T ss_pred             cc--ccce-eeecCCeeeeehhh
Confidence            63  3344 44556678999743

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.46  E-value=1.5e-08  Score=123.30  Aligned_cols=538  Identities=12%  Similarity=0.129  Sum_probs=288.0

Q ss_pred             CCCCcEEEEEecCCCeEEEEEeccCcEEEE----ecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCC
Q 001295          349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLW----EVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  424 (1106)
Q Consensus       349 h~~~v~~~~~sp~g~~llatg~~dg~i~iw----d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg  424 (1106)
                      ..+.|.++.|-++... ++.+..+|.|.+.    +..+.+...                    ...-...|.|++||||+
T Consensus        74 ~~~~ivs~~yl~d~~~-l~~~~~~Gdi~~~~~~~~~~~~~~E~--------------------VG~vd~GI~a~~WSPD~  132 (928)
T PF04762_consen   74 PNDKIVSFQYLADSES-LCIALASGDIILVREDPDPDEDEIEI--------------------VGSVDSGILAASWSPDE  132 (928)
T ss_pred             CCCcEEEEEeccCCCc-EEEEECCceEEEEEccCCCCCceeEE--------------------EEEEcCcEEEEEECCCc
Confidence            4578999999999985 7778889999999    555544332                    23345689999999999


Q ss_pred             CEEEEEeCCCeEEEEEcc----C---------C----------ceeeee----------------------eeeccccCC
Q 001295          425 SLFGVAYSRHIVQIYSYH----G---------G----------DEVRQH----------------------LEIDAHVGG  459 (1106)
Q Consensus       425 ~~las~~~d~~v~iwd~~----~---------~----------~~~~~~----------------------~~l~~h~~~  459 (1106)
                      ..||.++.+++|.+.+-.    .         |          +.-.++                      ..+. +...
T Consensus       133 Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~  211 (928)
T PF04762_consen  133 ELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDG  211 (928)
T ss_pred             CEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCC
Confidence            999999999988876421    0         0          000000                      0111 3335


Q ss_pred             eeEEEEcCCCCceEEEEecC------CCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEec---CCeEEEE
Q 001295          460 VNDIAFSHPNKQLCVITCGD------DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL---DGKIKAW  530 (1106)
Q Consensus       460 V~~~~~s~d~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iw  530 (1106)
                      -..|+|-.||.  +||+.+.      -+.++||+ +.|....+-..-.+--.+++|.|++  ++|++.-.   ...|.+|
T Consensus       212 ~~~ISWRGDG~--yFAVss~~~~~~~~R~iRVy~-ReG~L~stSE~v~gLe~~l~WrPsG--~lIA~~q~~~~~~~VvFf  286 (928)
T PF04762_consen  212 RVRISWRGDGE--YFAVSSVEPETGSRRVIRVYS-REGELQSTSEPVDGLEGALSWRPSG--NLIASSQRLPDRHDVVFF  286 (928)
T ss_pred             ceEEEECCCCc--EEEEEEEEcCCCceeEEEEEC-CCceEEeccccCCCccCCccCCCCC--CEEEEEEEcCCCcEEEEE
Confidence            56789999999  6766553      36899999 6677655544333444567776554  67777754   3456666


Q ss_pred             eCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCccee--EEEccCC
Q 001295          531 LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL--TSIDADG  608 (1106)
Q Consensus       531 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~  608 (1106)
                      .-. +-....+...        +.+++.         .+..+.|++++..|+....|. |.+|...+..-.  +.+....
T Consensus       287 ErN-GLrhgeF~l~--------~~~~~~---------~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~  347 (928)
T PF04762_consen  287 ERN-GLRHGEFTLR--------FDPEEE---------KVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSS  347 (928)
T ss_pred             ecC-CcEeeeEecC--------CCCCCc---------eeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccC
Confidence            422 2111122111        111111         334455555555677766554 999998776522  2232222


Q ss_pred             CCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhccccccccc
Q 001295          609 GLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA  687 (1106)
Q Consensus       609 ~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  687 (1106)
                       ...+..+.|+| +...|.+.+.+|.+..++..-....-...                                      
T Consensus       348 -~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~--------------------------------------  388 (928)
T PF04762_consen  348 -SESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGS--------------------------------------  388 (928)
T ss_pred             -CCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCC--------------------------------------
Confidence             12345599999 56678888887888766543210000000                                      


Q ss_pred             ccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceE
Q 001295          688 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH  767 (1106)
Q Consensus       688 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  767 (1106)
                                     .++....+..-...++.+-.+.....+.......+   .-...|.+++|++++..+++...||.+
T Consensus       389 ---------------~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l---~~~~~v~~vaf~~~~~~~avl~~d~~l  450 (928)
T PF04762_consen  389 ---------------SPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYEL---ELPSPVNDVAFSPSNSRFAVLTSDGSL  450 (928)
T ss_pred             ---------------CccCceEEEEEeCCeEEEecccccCCCchHhceEE---cCCCCcEEEEEeCCCCeEEEEECCCCE
Confidence                           00011111111113444444444333333221111   134689999999999889999999999


Q ss_pred             EEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-C---CeEEEEEcCCCc-
Q 001295          768 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-G---GKISLFNMMTFK-  842 (1106)
Q Consensus       768 ~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-d---g~i~vwd~~~~~-  842 (1106)
                      .+|.+..............     .............  ......+..++|..+..+++... +   ..+.++++.... 
T Consensus       451 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  523 (928)
T PF04762_consen  451 SIYEWDLKNMWSVKPPKLL-----SSISLDSMDISDS--ELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSEN  523 (928)
T ss_pred             EEEEecCCCcccccCcchh-----hhccccccccccc--ccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCC
Confidence            9998664322110000000     0000000000000  01345678888888887777665 3   468888874332 


Q ss_pred             --eeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceE-EEEecCcccCeeEEEEecCCC---EEEEEcCCC
Q 001295          843 --TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV-KSKLKGHSKRITGLAFSHALN---VLVSSGADS  916 (1106)
Q Consensus       843 --~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~-~~~l~~h~~~V~~l~~s~d~~---~l~s~s~Dg  916 (1106)
                        .......-.+.+..+...+ +...++.-..+|.|...+...... +..|..- ..-..+....+..   .++.-+..|
T Consensus       524 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~~-c~~~~~~~~~~~~~~~~~~GLs~~~  601 (928)
T PF04762_consen  524 SASVESSTEVDGVVLIISSSP-DSGSLYIQTNDGKVFQLSSDGELSQIVKFPQP-CPWMEVCQINGSEDKRVLFGLSSNG  601 (928)
T ss_pred             ceeEEEEeccCceEEEEeeCC-CCcEEEEEECCCEEEEeecCCCccccccCCCC-CcEEEEEEECCccceeEEEEECCCC
Confidence              2233333344455555555 444466677899888666544321 2223221 1222233333333   455555555


Q ss_pred             cEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEecCC-ceEeeecccCC----CCCCe
Q 001295          917 QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTK-LECVKQWVPRE----SSAPI  990 (1106)
Q Consensus       917 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d~~~-~~~~~~~~~~~----h~~~v  990 (1106)
                      .+.+   .. .     .+.         ..++++++  .+.+|+. .....+++.++.. ........ ..    +...+
T Consensus       602 ~Ly~---n~-~-----~la---------~~~tSF~v--~~~~Ll~TT~~h~l~fv~L~~~~~~l~~~~-~~~~~~~de~~  660 (928)
T PF04762_consen  602 RLYA---NS-R-----LLA---------SNCTSFAV--TDSFLLFTTTQHTLKFVHLNSSVEDLEIPP-DSPENSYDERC  660 (928)
T ss_pred             EEEE---CC-E-----EEe---------cCCceEEE--EcCEEEEEecCceEEEEECcCchhhccccc-Ccccccccccc
Confidence            4443   11 1     111         24455555  3444444 6677788888871 11111110 00    11122


Q ss_pred             eEEEECCCCCEEEEEEcCCeEEEEEcCCceeE
Q 001295          991 THATFSCDSQLVYACFLDATVCVFSAANLKLR 1022 (1106)
Q Consensus       991 ~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~ 1022 (1106)
                      ..+   ..|..|+++--...=-|..+..|.+.
T Consensus       661 R~V---ERGsriVt~vp~~~~vVLQmPRGNLE  689 (928)
T PF04762_consen  661 RRV---ERGSRIVTAVPSDTSVVLQMPRGNLE  689 (928)
T ss_pred             ccC---ccCCEEEEEeCCCceEEEEcCCCchh
Confidence            222   36777777764444455577766554

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.45  E-value=1.6e-10  Score=122.59  Aligned_cols=285  Identities=16%  Similarity=0.270  Sum_probs=180.0

Q ss_pred             ceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCE
Q 001295          745 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY  824 (1106)
Q Consensus       745 ~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~  824 (1106)
                      .+..+-|+|.|.++.+--.      |.+...      .......+++|+.+++.........  .... ++..|+.|..+
T Consensus        75 ~~~~L~fSP~g~yL~T~e~------~~i~~~------~~~~~pn~~v~~vet~~~~s~~q~k--~Q~~-W~~qfs~dEsl  139 (566)
T KOG2315|consen   75 KTYDLLFSPKGNYLLTWEP------WAIYGP------KNASNPNVLVYNVETGVQRSQIQKK--MQNG-WVPQFSIDESL  139 (566)
T ss_pred             eeeeeeecccccccccccc------cccccC------CCCCCCceeeeeeccceehhheehh--hhcC-cccccccchhh
Confidence            5667778888876653211      111000      0000224567777775433321111  2222 58899999887


Q ss_pred             EEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecC-CCceEEE-----eeCCCcEEEEEeecceEEEEe--cC--cc
Q 001295          825 VMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ-DNNIIAI-----GMDDSSIQIYNVRVDEVKSKL--KG--HS  894 (1106)
Q Consensus       825 l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~-d~~~la~-----g~~dg~v~iwd~~~~~~~~~l--~~--h~  894 (1106)
                      .+--..+.+.+|+..+.+.+.. .-|...|+.+.+||. ....+|+     ++.-+.|+||...-...-..+  +.  -.
T Consensus       140 ~arlv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFka  218 (566)
T KOG2315|consen  140 AARLVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKA  218 (566)
T ss_pred             hhhhhcceEEEEecCCccceee-eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccccc
Confidence            7766688999999987544322 235678999999993 1234544     345568999987632211111  00  11


Q ss_pred             cCeeEEEEecCCCE---EEEEcCC---------CcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE
Q 001295          895 KRITGLAFSHALNV---LVSSGAD---------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV  962 (1106)
Q Consensus       895 ~~V~~l~~s~d~~~---l~s~s~D---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~  962 (1106)
                      +. ..+.|.+-|.-   |++..-|         .++.+.++++..    .......     .+.|.++.|+|+|+.++++
T Consensus       219 dk-vqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s----~~V~L~k-----~GPVhdv~W~~s~~EF~Vv  288 (566)
T KOG2315|consen  219 DK-VQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES----VSVPLLK-----EGPVHDVTWSPSGREFAVV  288 (566)
T ss_pred             ce-eEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce----EEEecCC-----CCCceEEEECCCCCEEEEE
Confidence            22 23667666542   3333334         357777777311    1222221     1589999999999988883


Q ss_pred             ---eCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcC---CeEEEEEcCCceeEEeeCCCcccCCCCC
Q 001295          963 ---HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD---ATVCVFSAANLKLRCRINPSAYLPAGVS 1036 (1106)
Q Consensus       963 ---~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~D---g~i~vwd~~~~~~~~~~~~~~~~~~~~~ 1036 (1106)
                         .-..+.|||++ +..+..+.    .++=.++-|+|.|++|+.++-+   |.|-|||+.+.+++..+.    ..    
T Consensus       289 yGfMPAkvtifnlr-~~~v~df~----egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~----a~----  355 (566)
T KOG2315|consen  289 YGFMPAKVTIFNLR-GKPVFDFP----EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK----AA----  355 (566)
T ss_pred             EecccceEEEEcCC-CCEeEeCC----CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccc----cC----
Confidence               45789999987 66666665    5678899999999998877644   889999999999988776    11    


Q ss_pred             CCCccceEEEEeCCCCCEEEEEeC------CCcEEEEeecCCC
Q 001295         1037 SSNVHPLVIAAHPQEPNEFALGLS------DGGVHVFEPLESE 1073 (1106)
Q Consensus      1037 ~~~v~~~~~~~~~~d~~~l~t~~~------Dg~v~vW~~~~~~ 1073 (1106)
                          ....+.|+| ||.+++|+..      |+.++||++....
T Consensus       356 ----~tt~~eW~P-dGe~flTATTaPRlrvdNg~KiwhytG~~  393 (566)
T KOG2315|consen  356 ----NTTVFEWSP-DGEYFLTATTAPRLRVDNGIKIWHYTGSL  393 (566)
T ss_pred             ----CceEEEEcC-CCcEEEEEeccccEEecCCeEEEEecCce
Confidence                122689999 7999988775      5788999986543

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.45  E-value=7.4e-12  Score=123.99  Aligned_cols=325  Identities=14%  Similarity=0.240  Sum_probs=204.0

Q ss_pred             cCCCCEEEEEECCCeEEEEEC-CCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccc
Q 001295          575 DTTKNRFLAAGDDFSIKFWDM-DSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA  653 (1106)
Q Consensus       575 ~~~~~~l~~~~~d~~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  653 (1106)
                      -|..+-+++.+.|.++++|-- +.++.-..+. +.....++++.+.++...|++|-.+|++.-+.+..........+   
T Consensus        33 ~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~-~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r---  108 (404)
T KOG1409|consen   33 IPKEEGVISVSEDRTVRVWLKRDSGQYWPSIY-HYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLK---  108 (404)
T ss_pred             ccCCCCeEEccccceeeeEEeccccccCchhh-hhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhh---
Confidence            334445999999999999954 4455444443 22345688999999999999999999998876644321111110   


Q ss_pred             cccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccce
Q 001295          654 YDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCR  733 (1106)
Q Consensus       654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~  733 (1106)
                                                                                        .|            
T Consensus       109 ------------------------------------------------------------------~~------------  110 (404)
T KOG1409|consen  109 ------------------------------------------------------------------DY------------  110 (404)
T ss_pred             ------------------------------------------------------------------hh------------
Confidence                                                                              00            


Q ss_pred             ecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCe
Q 001295          734 SLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAV  813 (1106)
Q Consensus       734 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v  813 (1106)
                            ..|...+..+.|+-....+++.+.|..+. |....                     .|..+....    .....
T Consensus       111 ------~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e---------------------~~~~lg~Y~----~~~~~  158 (404)
T KOG1409|consen  111 ------LAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTE---------------------SGNRLGGYN----FETPA  158 (404)
T ss_pred             ------hhhhcceeeEEecCCceeEEEeccccceE-EEeec---------------------cCCcccceE----eeccC
Confidence                  23778889999998888899999886654 33211                     111111000    01111


Q ss_pred             eEEEEecCCCEEEEEe-CCeEEEEEc--CCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecce-EEEE
Q 001295          814 PCFALSKNDSYVMSAS-GGKISLFNM--MTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE-VKSK  889 (1106)
Q Consensus       814 ~~l~~s~~~~~l~~~s-dg~i~vwd~--~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~-~~~~  889 (1106)
                      +++.+.-.  +...|. .|.|.+-.+  .....+.++.+|.+.+++++|.+ ..++|.+|..|..|.+||+.-.+ ....
T Consensus       159 t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~e  235 (404)
T KOG1409|consen  159 SALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYE  235 (404)
T ss_pred             CCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeee
Confidence            11111111  333443 355544433  45567888999999999999999 88999999999999999997644 3467


Q ss_pred             ecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceee-------------------------cccCCCCC-C
Q 001295          890 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFL-------------------------QIPTGRTP-T  943 (1106)
Q Consensus       890 l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~-------------------------~~~~~~~~-~  943 (1106)
                      +.+|.+.|..++..+--+.|+|++.||.|.+|+++........-+                         .....|-. -
T Consensus       236 l~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkc  315 (404)
T KOG1409|consen  236 LQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKC  315 (404)
T ss_pred             eccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhh
Confidence            889999999999998899999999999999999876433221100                         00000000 0


Q ss_pred             CCCCceEEEcCCCcEEEEEeCCeEEEEecCCc-----eE--eeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEc
Q 001295          944 AQSDTRVQFHQDQIHFLVVHETQLAIFETTKL-----EC--VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1016 (1106)
Q Consensus       944 ~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~-----~~--~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~ 1016 (1106)
                      ...+...+-+.-..+...+.+-.+|+-|.-..     ..  +..+  +.-...|+.|.+..+-.+|+|++.|..|+|||+
T Consensus       316 g~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~p--hei~tgItamhlqetlglLvTsG~~Rvi~iwd~  393 (404)
T KOG1409|consen  316 GKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIP--HEIKTGITAMHLQETLGLLVTSGTDRVIKIWDV  393 (404)
T ss_pred             hhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccc--cccccceeEEEhhhhccceeecCCceEEEEEec
Confidence            01122222222222333344444555443111     11  1111  122457999999999999999999999999997


Q ss_pred             CC
Q 001295         1017 AN 1018 (1106)
Q Consensus      1017 ~~ 1018 (1106)
                      ..
T Consensus       394 ~~  395 (404)
T KOG1409|consen  394 RS  395 (404)
T ss_pred             hh
Confidence            63

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.44  E-value=1.2e-10  Score=121.82  Aligned_cols=362  Identities=14%  Similarity=0.201  Sum_probs=227.0

Q ss_pred             cCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCC-------
Q 001295          408 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD-------  480 (1106)
Q Consensus       408 ~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d-------  480 (1106)
                      +....-++..++|||.|++|++....+ |.+|+-..+..+.   .+ .| ..|..+.|+|.++  +|++-+..       
T Consensus        28 ~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~---~~-~~-~~V~~~~fSP~~k--YL~tw~~~pi~~pe~   99 (561)
T COG5354          28 FESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLV---RF-RH-PDVKYLDFSPNEK--YLVTWSREPIIEPEI   99 (561)
T ss_pred             ccccCcchhheeecCcchheehhhccc-eEEccccchhhee---ee-ec-CCceecccCcccc--eeeeeccCCccChhh
Confidence            344567899999999999999887666 9999988766433   22 23 4699999999999  88886543       


Q ss_pred             --------CcEEEEeCCCCceeEEEeccCCC--eE-EEeccccCCceEEEEEecCCeEEEEeCCCCCceeEe-eCCCCee
Q 001295          481 --------KTIKVWDATNGAKQYIFEGHEAP--VY-SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-EAPGRWC  548 (1106)
Q Consensus       481 --------~~i~iwd~~~~~~~~~~~~h~~~--v~-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v  548 (1106)
                              ..+.+||+.+|..+..+.+...+  .+ -+.|+.+.  .+++-. ....+.++++...-....+ ......+
T Consensus       100 e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D--~y~ARv-v~~sl~i~e~t~n~~~~p~~~lr~~gi  176 (561)
T COG5354         100 EISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDD--KYVARV-VGSSLYIHEITDNIEEHPFKNLRPVGI  176 (561)
T ss_pred             ccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecc--hhhhhh-ccCeEEEEecCCccccCchhhccccce
Confidence                    35999999999999999876665  44 44554433  344333 3456888886221111111 1123456


Q ss_pred             EEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEE
Q 001295          549 TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS  628 (1106)
Q Consensus       549 ~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~  628 (1106)
                      ...+++|.+..        .. .+-|.|.     ..+.++.+++|.+..++.+.+-....-  .-..+.|.+.|++|++-
T Consensus       177 ~dFsisP~~n~--------~~-la~~tPE-----k~~kpa~~~i~sIp~~s~l~tk~lfk~--~~~qLkW~~~g~~ll~l  240 (561)
T COG5354         177 LDFSISPEGNH--------DE-LAYWTPE-----KLNKPAMVRILSIPKNSVLVTKNLFKV--SGVQLKWQVLGKYLLVL  240 (561)
T ss_pred             eeEEecCCCCC--------ce-EEEEccc-----cCCCCcEEEEEEccCCCeeeeeeeEee--cccEEEEecCCceEEEE
Confidence            77777776531        00 1122221     146788999999987776655433221  12357889999888764


Q ss_pred             eCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCc
Q 001295          629 TNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKP  708 (1106)
Q Consensus       629 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  708 (1106)
                      ...      +..+++..+                                                              
T Consensus       241 ~~t------~~ksnKsyf--------------------------------------------------------------  252 (561)
T COG5354         241 VMT------HTKSNKSYF--------------------------------------------------------------  252 (561)
T ss_pred             EEE------eeeccccee--------------------------------------------------------------
Confidence            321      111110000                                                              


Q ss_pred             cccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEee--cCceEEEeeccccccCCCCccccc
Q 001295          709 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALA--SNAIHLLWKWQRTERNSSGKATAS  786 (1106)
Q Consensus       709 l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~  786 (1106)
                           ...++.++++........        ....+.|..++|.|.++.+++.+  ....+.++++..+           
T Consensus       253 -----gesnLyl~~~~e~~i~V~--------~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-----------  308 (561)
T COG5354         253 -----GESNLYLLRITERSIPVE--------KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-----------  308 (561)
T ss_pred             -----ccceEEEEeeccccccee--------ccccccceeeeecccCCceeEEecccccceeecccccc-----------
Confidence                 002333333332111100        01457899999999998887666  3577777766531           


Q ss_pred             cCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-C---CeEEEEEcCCCceee-eecCCCCCeeEEEEec
Q 001295          787 VAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-G---GKISLFNMMTFKTMA-TFMPPPPAATFLAFHP  861 (1106)
Q Consensus       787 ~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-d---g~i~vwd~~~~~~~~-~~~~~~~~v~~l~~s~  861 (1106)
                                  +...     .....-..+.|+|.+++++.++ |   |.|.+||....-... .+.+.  ..+-+.|+|
T Consensus       309 ------------l~~~-----~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wsp  369 (561)
T COG5354         309 ------------LRFY-----FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSP  369 (561)
T ss_pred             ------------eEEe-----cCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccC
Confidence                        1111     1333445688999999999887 4   789999987654433 55543  356788999


Q ss_pred             CCCceEEEee------CCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCC
Q 001295          862 QDNNIIAIGM------DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS  916 (1106)
Q Consensus       862 ~d~~~la~g~------~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg  916 (1106)
                       |+.++.+..      .|..|.|||+......        ..+.+.|-|.|++.-+.+.+.
T Consensus       370 -d~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f--------el~~~~W~p~~~~~ttsSs~~  421 (561)
T COG5354         370 -DGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF--------ELTNITWDPSGQYVTTSSSCP  421 (561)
T ss_pred             -CceEEEecCCCcccccCcceEEEEecCchhh--------hhhhccccCCcccceeeccCC
Confidence             888887764      4678999998754422        466788888887776666554

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.44  E-value=6e-11  Score=135.66  Aligned_cols=214  Identities=10%  Similarity=0.062  Sum_probs=145.7

Q ss_pred             eEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeC---CCcEEEEEeecceEEEEecCcccCeeEEEEecCCCE
Q 001295          832 KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD---DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNV  908 (1106)
Q Consensus       832 ~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~---dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~  908 (1106)
                      .|.++|... ...+.+..+...+.+.+|+| |++.|+..+.   +..|++||+.+++. ..+..+.+.+.+.+|+|||+.
T Consensus       183 ~l~~~d~dg-~~~~~lt~~~~~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~~  259 (435)
T PRK05137        183 RLAIMDQDG-ANVRYLTDGSSLVLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDGRK  259 (435)
T ss_pred             EEEEECCCC-CCcEEEecCCCCeEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCCCCE
Confidence            688899854 44456666778899999999 8888877653   46899999988765 345556677888999999988


Q ss_pred             EE-EEcCCCc--EEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeC----CeEEEEecCCceEeeec
Q 001295          909 LV-SSGADSQ--LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE----TQLAIFETTKLECVKQW  981 (1106)
Q Consensus       909 l~-s~s~Dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d----~~v~i~d~~~~~~~~~~  981 (1106)
                      |+ +.+.++.  |.+||+.+++..   .+   ..+.   .......|+|||+.|+...+    ..|+++|+.+++.....
T Consensus       260 la~~~~~~g~~~Iy~~d~~~~~~~---~L---t~~~---~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt  330 (435)
T PRK05137        260 VVMSLSQGGNTDIYTMDLRSGTTT---RL---TDSP---AIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRIS  330 (435)
T ss_pred             EEEEEecCCCceEEEEECCCCceE---Ec---cCCC---CccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEee
Confidence            75 5555655  777788775431   11   1111   23567899999999988433    36889998876654432


Q ss_pred             ccCCCCCCeeEEEECCCCCEEEEEEcC---CeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEE
Q 001295          982 VPRESSAPITHATFSCDSQLVYACFLD---ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG 1058 (1106)
Q Consensus       982 ~~~~h~~~v~~l~~s~d~~~l~t~s~D---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~ 1058 (1106)
                      .   +...+....|||||++|+..+.+   ..|.+||..++.. ..+.      .+.   .+.  ...|+| ||+.|+..
T Consensus       331 ~---~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt------~~~---~~~--~p~~sp-DG~~i~~~  394 (435)
T PRK05137        331 F---GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT------SGF---LVE--GPTWAP-NGRVIMFF  394 (435)
T ss_pred             c---CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc------CCC---CCC--CCeECC-CCCEEEEE
Confidence            2   24456778999999999877654   3688899866543 2222      111   122  578999 68877655


Q ss_pred             eCC-C-----cEEEEeecCCC
Q 001295         1059 LSD-G-----GVHVFEPLESE 1073 (1106)
Q Consensus      1059 ~~D-g-----~v~vW~~~~~~ 1073 (1106)
                      +.+ +     .|++.++..++
T Consensus       395 ~~~~~~~~~~~L~~~dl~g~~  415 (435)
T PRK05137        395 RQTPGSGGAPKLYTVDLTGRN  415 (435)
T ss_pred             EccCCCCCcceEEEEECCCCc
Confidence            443 2     46666765554

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.43  E-value=3.8e-10  Score=111.14  Aligned_cols=238  Identities=15%  Similarity=0.214  Sum_probs=159.3

Q ss_pred             CcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEE-E
Q 001295          352 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV-A  430 (1106)
Q Consensus       352 ~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las-~  430 (1106)
                      ....++|+.|..- +++|. |.-.+||+++.-+....+.+                 ..-.-.+.-+-|  -.++||- |
T Consensus         7 ~~lsvs~NQD~Sc-Fava~-~~Gfriyn~~P~ke~~~r~~-----------------~~~G~~~veMLf--R~N~laLVG   65 (346)
T KOG2111|consen    7 KTLSVSFNQDHSC-FAVAT-DTGFRIYNCDPFKESASRQF-----------------IDGGFKIVEMLF--RSNYLALVG   65 (346)
T ss_pred             ceeEEEEccCCce-EEEEe-cCceEEEecCchhhhhhhcc-----------------ccCchhhhhHhh--hhceEEEec
Confidence            3445999999984 76665 45678999876333221111                 000012222222  3345554 3


Q ss_pred             eCC------CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCC-CCceeEEEeccC--
Q 001295          431 YSR------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQYIFEGHE--  501 (1106)
Q Consensus       431 ~~d------~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~h~--  501 (1106)
                      |.+      ..|.|||=....++.   ++ ....+|.++.+.++-    ++..- .+.|+||... +.+.++.+....  
T Consensus        66 Gg~~pky~pNkviIWDD~k~~~i~---el-~f~~~I~~V~l~r~r----iVvvl-~~~I~VytF~~n~k~l~~~et~~NP  136 (346)
T KOG2111|consen   66 GGSRPKYPPNKVIIWDDLKERCII---EL-SFNSEIKAVKLRRDR----IVVVL-ENKIYVYTFPDNPKLLHVIETRSNP  136 (346)
T ss_pred             CCCCCCCCCceEEEEecccCcEEE---EE-EeccceeeEEEcCCe----EEEEe-cCeEEEEEcCCChhheeeeecccCC
Confidence            322      469999954444443   33 246789999998763    33333 5789999987 566676665433  


Q ss_pred             CCeEEEeccccCCceEEEEEe-cCCeEEEEeCCCCCc--eeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCC
Q 001295          502 APVYSVCPHHKENIQFIFSTA-LDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK  578 (1106)
Q Consensus       502 ~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~  578 (1106)
                      ....+++  +..+..+|+.-| .-|.|++-|+.....  ...+..|...|.+++.+.+|.                    
T Consensus       137 kGlC~~~--~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt--------------------  194 (346)
T KOG2111|consen  137 KGLCSLC--PTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGT--------------------  194 (346)
T ss_pred             CceEeec--CCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc--------------------
Confidence            3344444  444444555443 468999999876554  466677777666666666665                    


Q ss_pred             CEEEEEECCCe-EEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295          579 NRFLAAGDDFS-IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       579 ~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                       .+++++..|+ |||||..+|+.+..+........|.+++|||++.+|+++++.|+++|+.++..
T Consensus       195 -~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  195 -LVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             -EEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence             7899998887 79999999999999976555668999999999999999999999999998764

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.42  E-value=2.7e-11  Score=127.89  Aligned_cols=292  Identities=16%  Similarity=0.177  Sum_probs=194.4

Q ss_pred             cccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccC--CCeEEEeccccCCceEEEEEecCCeEEEEeC
Q 001295          455 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE--APVYSVCPHHKENIQFIFSTALDGKIKAWLY  532 (1106)
Q Consensus       455 ~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~  532 (1106)
                      +|...-+.|..+|||++ ++++|-..-.|++||+..-....  ..|.  ..|.-.-.+  .|-..++.-..|.+|-+...
T Consensus        49 e~p~ast~ik~s~DGqY-~lAtG~YKP~ikvydlanLSLKF--ERhlDae~V~feiLs--DD~SK~v~L~~DR~IefHak  123 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQY-LLATGTYKPQIKVYDLANLSLKF--ERHLDAEVVDFEILS--DDYSKSVFLQNDRTIEFHAK  123 (703)
T ss_pred             CCccccceeEecCCCcE-EEEecccCCceEEEEcccceeee--eecccccceeEEEec--cchhhheEeecCceeeehhh
Confidence            47778899999999998 78899999999999987655432  2232  223222221  22223444444555544311


Q ss_pred             CCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCC
Q 001295          533 DNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPA  612 (1106)
Q Consensus       533 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  612 (1106)
                      -            +.-..+.+..-|            ..++++.-..-|++++....|+-+|+..|+.+..+....  +.
T Consensus       124 ~------------G~hy~~RIP~~G------------RDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~--~~  177 (703)
T KOG2321|consen  124 Y------------GRHYRTRIPKFG------------RDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDS--GE  177 (703)
T ss_pred             c------------CeeeeeecCcCC------------ccccccCCCccEEEeecCcceEEEEcccccccccccccc--cc
Confidence            1            101111111111            123333333347777777889999999999998887663  47


Q ss_pred             cCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccc
Q 001295          613 SPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVS  692 (1106)
Q Consensus       613 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  692 (1106)
                      +++|..++-..+|++|+.+|.+.+||.++. ..+..+..... +.                                   
T Consensus       178 lN~v~in~~hgLla~Gt~~g~VEfwDpR~k-srv~~l~~~~~-v~-----------------------------------  220 (703)
T KOG2321|consen  178 LNVVSINEEHGLLACGTEDGVVEFWDPRDK-SRVGTLDAASS-VN-----------------------------------  220 (703)
T ss_pred             ceeeeecCccceEEecccCceEEEecchhh-hhheeeecccc-cC-----------------------------------
Confidence            999999999999999999999999998776 22222221100 00                                   


Q ss_pred             cCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeec
Q 001295          693 IPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKW  772 (1106)
Q Consensus       693 ~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~  772 (1106)
                                                                 ..+..-....|+++.|+.+|-.+++|+.+|.+.|||+
T Consensus       221 -------------------------------------------s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDL  257 (703)
T KOG2321|consen  221 -------------------------------------------SHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDL  257 (703)
T ss_pred             -------------------------------------------CCccccccCcceEEEecCCceeEEeeccCCcEEEEEc
Confidence                                                       0000013346899999999999999999999999998


Q ss_pred             cccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecC--CCEEEEEeCCeEEEEEcCCCceeeeecCC
Q 001295          773 QRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN--DSYVMSASGGKISLFNMMTFKTMATFMPP  850 (1106)
Q Consensus       773 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~--~~~l~~~sdg~i~vwd~~~~~~~~~~~~~  850 (1106)
                      ....                      .+.  .......-+|..+.|.+.  +..+++.....++|||-.+|+....+.. 
T Consensus       258 Ra~~----------------------pl~--~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp-  312 (703)
T KOG2321|consen  258 RASK----------------------PLL--VKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP-  312 (703)
T ss_pred             ccCC----------------------cee--ecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeeccc-
Confidence            7422                      111  112235667888888765  4566666668899999999998887774 


Q ss_pred             CCCeeEEEEecCCCceEEEeeCCCcEEEEEeec
Q 001295          851 PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV  883 (1106)
Q Consensus       851 ~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~  883 (1106)
                      ...+..+|+-| ++-++.+|-+++.+..|-+..
T Consensus       313 t~~lND~C~~p-~sGm~f~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  313 TSDLNDFCFVP-GSGMFFTANESSKMHTYYIPS  344 (703)
T ss_pred             cCCcCceeeec-CCceEEEecCCCcceeEEccc
Confidence            44599999999 788888999998888776654

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=8.7e-11  Score=133.25  Aligned_cols=213  Identities=12%  Similarity=0.125  Sum_probs=134.1

Q ss_pred             cEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEe---CCCeEEEEEccCCceeeee
Q 001295          374 DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY---SRHIVQIYSYHGGDEVRQH  450 (1106)
Q Consensus       374 ~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~---~d~~v~iwd~~~~~~~~~~  450 (1106)
                      .|.+||.+......                    +..+...+...+|||||+.||..+   .+..|.+|++.+++... +
T Consensus       180 ~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l  238 (429)
T PRK03629        180 ELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-V  238 (429)
T ss_pred             eEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-c
Confidence            68888887554322                    345567899999999999999764   24579999999876432 2


Q ss_pred             eeeccccCCeeEEEEcCCCCceEEEEecCCC--cEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEec-CCeE
Q 001295          451 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DGKI  527 (1106)
Q Consensus       451 ~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~i  527 (1106)
                      ..+.   +.+...+|+|||+. ++++.+.++  .|++||+.+++... +..+...+....|+++  |+.|+..+. ++..
T Consensus       239 ~~~~---~~~~~~~~SPDG~~-La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPD--G~~I~f~s~~~g~~  311 (429)
T PRK03629        239 ASFP---RHNGAPAFSPDGSK-LAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPD--SQNLAYTSDQAGRP  311 (429)
T ss_pred             cCCC---CCcCCeEECCCCCE-EEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCC--CCEEEEEeCCCCCc
Confidence            2333   34567899999995 233334444  58999998887544 4444456677787654  466665554 4444


Q ss_pred             EEE--eCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEEC---CCeEEEEECCCcceeE
Q 001295          528 KAW--LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD---DFSIKFWDMDSVQLLT  602 (1106)
Q Consensus       528 ~iw--d~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~  602 (1106)
                      .+|  |+..+.. ..+.........                     ..|+|+|++++..+.   ...|++||+.+++.. 
T Consensus       312 ~Iy~~d~~~g~~-~~lt~~~~~~~~---------------------~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-  368 (429)
T PRK03629        312 QVYKVNINGGAP-QRITWEGSQNQD---------------------ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-  368 (429)
T ss_pred             eEEEEECCCCCe-EEeecCCCCccC---------------------EEECCCCCEEEEEEccCCCceEEEEECCCCCeE-
Confidence            555  5443322 222222222223                     445555556666443   246889999888644 


Q ss_pred             EEccCCCCCCcCeEEEccCCCEEEEEeCCCc---EEEEEcc
Q 001295          603 SIDADGGLPASPRIRFNKDGCLLAVSTNDNG---IKILATS  640 (1106)
Q Consensus       603 ~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~---i~iwd~~  640 (1106)
                      .+...   .......|+|||++|+.++.++.   +.++++.
T Consensus       369 ~Lt~~---~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~  406 (429)
T PRK03629        369 VLTDT---FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD  406 (429)
T ss_pred             EeCCC---CCCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence            33322   12456889999999999988765   5666663

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.41  E-value=8.3e-13  Score=135.62  Aligned_cols=260  Identities=12%  Similarity=0.152  Sum_probs=186.3

Q ss_pred             EEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcc
Q 001295          572 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN  651 (1106)
Q Consensus       572 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  651 (1106)
                      +.++.+|.+++.|+..|.|-.+|..++++...+....   .|.++.|-.+.+++|++-. ..++|||-..-  .+..++ 
T Consensus       135 ~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~E---tv~Dv~~LHneq~~AVAQK-~y~yvYD~~Gt--ElHClk-  207 (545)
T KOG1272|consen  135 LDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVME---TVRDVTFLHNEQFFAVAQK-KYVYVYDNNGT--ELHCLK-  207 (545)
T ss_pred             eeecCCccEEEecCCccceeeeecccceeeeeeehhh---hhhhhhhhcchHHHHhhhh-ceEEEecCCCc--EEeehh-
Confidence            3444455589999999999999999999988886543   4889999999999888765 67888885322  111111 


Q ss_pred             cccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCcc
Q 001295          652 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ  731 (1106)
Q Consensus       652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~  731 (1106)
                                                                                                      
T Consensus       208 --------------------------------------------------------------------------------  207 (545)
T KOG1272|consen  208 --------------------------------------------------------------------------------  207 (545)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCC
Q 001295          732 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE  811 (1106)
Q Consensus       732 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  811 (1106)
                                ....|..+.|-|.--.|++++..|.++.-|++                      +|.++...-.   ..+
T Consensus       208 ----------~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS----------------------~GklVa~~~t---~~G  252 (545)
T KOG1272|consen  208 ----------RHIRVARLEFLPYHFLLVAASEAGFLKYQDVS----------------------TGKLVASIRT---GAG  252 (545)
T ss_pred             ----------hcCchhhhcccchhheeeecccCCceEEEeec----------------------hhhhhHHHHc---cCC
Confidence                      22456677788887778888888988877665                      4444443222   355


Q ss_pred             CeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEe
Q 001295          812 AVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL  890 (1106)
Q Consensus       812 ~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l  890 (1106)
                      .+..++-+|-+..+-+|. +|+|.+|.-...+.+..+..|.++|.+|++.+ +|+|+|+.+.|..++|||+.....+.++
T Consensus       253 ~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~~~ql~t~  331 (545)
T KOG1272|consen  253 RTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDR-GGRYMATTGLDRKVKIWDLRNFYQLHTY  331 (545)
T ss_pred             ccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECC-CCcEEeecccccceeEeeecccccccee
Confidence            677788888888888887 89999999999999988999999999999999 9999999999999999999987755555


Q ss_pred             cCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCc-c-cccceeecccCCCCCCCCCCceEEEcCCCcEEEEE
Q 001295          891 KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW-E-KQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV  962 (1106)
Q Consensus       891 ~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~-~-~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~  962 (1106)
                      .. .-....++||.-| +||.+ ....|.||.-... . ......+...     ....|..+.|.|-...|-+|
T Consensus       332 ~t-p~~a~~ls~Sqkg-lLA~~-~G~~v~iw~d~~~~s~~~~~pYm~H~-----~~~~V~~l~FcP~EDvLGIG  397 (545)
T KOG1272|consen  332 RT-PHPASNLSLSQKG-LLALS-YGDHVQIWKDALKGSGHGETPYMNHR-----CGGPVEDLRFCPYEDVLGIG  397 (545)
T ss_pred             ec-CCCcccccccccc-ceeee-cCCeeeeehhhhcCCCCCCcchhhhc-----cCcccccceeccHHHeeecc
Confidence            43 3456778898655 44444 3445999953221 1 1111112111     11367888888877666553

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=3.6e-11  Score=136.33  Aligned_cols=222  Identities=9%  Similarity=0.016  Sum_probs=138.4

Q ss_pred             eeeccCCCCcEEEEEecCCCeEEEEEec--cCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEc
Q 001295          344 TRTLNQGSSPMSMDFHPVQQTLLLVGTN--VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  421 (1106)
Q Consensus       344 ~~~~~h~~~v~~~~~sp~g~~llatg~~--dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s  421 (1106)
                      .....+...+.+.+|||||++|+.+...  +..|.+||+.+++...                    +....+.+..++||
T Consensus       192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------l~~~~~~~~~~~~S  251 (429)
T PRK03629        192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VASFPRHNGAPAFS  251 (429)
T ss_pred             EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ccCCCCCcCCeEEC
Confidence            3444577789999999999975544322  3579999998876433                    12222334568999


Q ss_pred             cCCCEEEEE-eCCC--eEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEec-CCCc--EEEEeCCCCceeE
Q 001295          422 PDGSLFGVA-YSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG-DDKT--IKVWDATNGAKQY  495 (1106)
Q Consensus       422 pdg~~las~-~~d~--~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~-~d~~--i~iwd~~~~~~~~  495 (1106)
                      |||++|+.. +.+|  .|.+||+.+++..+    +..+...+....|+|||+.  |+..+ .++.  |.++|+.++.. .
T Consensus       252 PDG~~La~~~~~~g~~~I~~~d~~tg~~~~----lt~~~~~~~~~~wSPDG~~--I~f~s~~~g~~~Iy~~d~~~g~~-~  324 (429)
T PRK03629        252 PDGSKLAFALSKTGSLNLYVMDLASGQIRQ----VTDGRSNNTEPTWFPDSQN--LAYTSDQAGRPQVYKVNINGGAP-Q  324 (429)
T ss_pred             CCCCEEEEEEcCCCCcEEEEEECCCCCEEE----ccCCCCCcCceEECCCCCE--EEEEeCCCCCceEEEEECCCCCe-E
Confidence            999999865 3344  58999999876443    4445567889999999994  54444 3444  55557666654 3


Q ss_pred             EEeccCCCeEEEeccccCCceEEEEEecC---CeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEE
Q 001295          496 IFEGHEAPVYSVCPHHKENIQFIFSTALD---GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV  572 (1106)
Q Consensus       496 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~  572 (1106)
                      .+..+........|++  +|++|+..+.+   ..|.+||+.++... .+... .....                     .
T Consensus       325 ~lt~~~~~~~~~~~Sp--DG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~---------------------p  379 (429)
T PRK03629        325 RITWEGSQNQDADVSS--DGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDET---------------------P  379 (429)
T ss_pred             EeecCCCCccCEEECC--CCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCC---------------------c
Confidence            4444444455666654  55667665543   35788888765422 22111 11122                     3


Q ss_pred             EEcCCCCEEEEEECCC---eEEEEECCCcceeEEEccCCCCCCcCeEEEcc
Q 001295          573 QFDTTKNRFLAAGDDF---SIKFWDMDSVQLLTSIDADGGLPASPRIRFNK  620 (1106)
Q Consensus       573 ~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  620 (1106)
                      .|+|||..++.++.++   .++++++ +|.....+..+.  ..+...+|+|
T Consensus       380 ~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~--~~~~~p~Wsp  427 (429)
T PRK03629        380 SIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATD--GQVKFPAWSP  427 (429)
T ss_pred             eECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCC--CCcCCcccCC
Confidence            4556666777777654   3777887 455556665443  3577788887

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.41  E-value=7.4e-10  Score=119.80  Aligned_cols=476  Identities=13%  Similarity=0.141  Sum_probs=273.9

Q ss_pred             cCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCc---------------eeEEEeccCCCeEEEeccccCCceEEEEE
Q 001295          457 VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA---------------KQYIFEGHEAPVYSVCPHHKENIQFIFST  521 (1106)
Q Consensus       457 ~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~---------------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~  521 (1106)
                      .....|+.|+....  +++.||.||.++|-.+.+..               .-+++.||.+.|.-+.|+...  +.|-+.
T Consensus        14 nvkL~c~~WNke~g--yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~--QKLTtS   89 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESG--YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN--QKLTTS   89 (1189)
T ss_pred             CceEEEEEEcccCC--eEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc--cccccc
Confidence            34678999999988  89999999999999776421               124678999999999986443  679999


Q ss_pred             ecCCeEEEEeCCCCCceeEe--eCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcc
Q 001295          522 ALDGKIKAWLYDNLGSRVDY--EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ  599 (1106)
Q Consensus       522 ~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  599 (1106)
                      ..+|.|.+|-+-.+.-...+  ......|.+++|..||.                     .+....+||.|.+=.++..+
T Consensus        90 Dt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~---------------------kIcIvYeDGavIVGsvdGNR  148 (1189)
T KOG2041|consen   90 DTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGT---------------------KICIVYEDGAVIVGSVDGNR  148 (1189)
T ss_pred             CCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCc---------------------EEEEEEccCCEEEEeeccce
Confidence            99999999977654322211  11223456666666665                     45555555555544443222


Q ss_pred             eeE-EEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhh
Q 001295          600 LLT-SIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAA  678 (1106)
Q Consensus       600 ~~~-~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  678 (1106)
                      ... .+++    .....+.|++|.+.++.+-.+|.+.++|.......--....   .+....     .|+.         
T Consensus       149 IwgKeLkg----~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c---~Vn~tg-----~~s~---------  207 (1189)
T KOG2041|consen  149 IWGKELKG----QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDC---EVNGTG-----IFSN---------  207 (1189)
T ss_pred             ecchhcch----heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhce---EEeeee-----eecC---------
Confidence            110 1111    12446899999999999999999999998765322111110   000000     0110         


Q ss_pred             cccccccccccccccCCCCCC-ccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCce
Q 001295          679 TSAGLADRAASMVSIPGMNGD-VRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA  757 (1106)
Q Consensus       679 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  757 (1106)
                             ....+....-+.+. ....|+...++++..+|.+.+..-.+...+..+.        ..-.|..+.|+++|..
T Consensus       208 -------~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d--------tgm~~vgakWnh~G~v  272 (1189)
T KOG2041|consen  208 -------FPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD--------TGMKIVGAKWNHNGAV  272 (1189)
T ss_pred             -------CCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe--------cccEeecceecCCCcE
Confidence                   01111112222232 3344588889999999988887766544433322        2357889999999999


Q ss_pred             EEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEE
Q 001295          758 ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFN  837 (1106)
Q Consensus       758 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd  837 (1106)
                      |++++.+....-             ...+..+.++.+. |..+.. ++.  ....|++++|-..|-.++.+-|+.|.+=+
T Consensus       273 LAvcG~~~da~~-------------~~d~n~v~Fysp~-G~i~gt-lkv--pg~~It~lsWEg~gLriA~Avdsfiyfan  335 (1189)
T KOG2041|consen  273 LAVCGNDSDADE-------------PTDSNKVHFYSPY-GHIVGT-LKV--PGSCITGLSWEGTGLRIAIAVDSFIYFAN  335 (1189)
T ss_pred             EEEccCcccccC-------------ccccceEEEeccc-hhheEE-Eec--CCceeeeeEEcCCceEEEEEecceEEEEe
Confidence            999887632110             0000112222221 211111 111  57789999999999999999999999888


Q ss_pred             cCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCc
Q 001295          838 MMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQ  917 (1106)
Q Consensus       838 ~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~  917 (1106)
                      ++-.-.-..+.   ..|.-+ ++  ....     -.-.|.+||..+.+..-+-..|   ..+++|..+.-.|+.-..|+.
T Consensus       336 IRP~ykWgy~e---~TvVy~-y~--~~e~-----p~y~i~Fwdtk~nek~vK~V~~---~~~~a~~~ehCvL~~~~d~~~  401 (1189)
T KOG2041|consen  336 IRPEYKWGYIE---ETVVYV-YQ--KEEL-----PQYGIMFWDTKTNEKTVKTVTH---FENMAFYREHCVLINRQDDGV  401 (1189)
T ss_pred             ecccceEEEee---eEEEEE-Ec--cCCC-----cceEEEEEecccChhhhhhhcc---eeehheecccEEEEeccccCC
Confidence            76422211111   111111 11  1000     1124788998876532222222   456788888888888888888


Q ss_pred             EEEEeC-CCcccccceeecccCCCCCC--CCCCceEEEcCCCcEEEEEeCCeEEEEecCCceEe----------------
Q 001295          918 LCVWSS-DGWEKQKNRFLQIPTGRTPT--AQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECV----------------  978 (1106)
Q Consensus       918 i~vwd~-~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~~----------------  978 (1106)
                      +.-++. ++....-...+.-.-|.+..  ...|.-....-++.+++.++...+.+|.....+..                
T Consensus       402 i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~rkegr~h~  481 (1189)
T KOG2041|consen  402 IPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIRKEGRFHG  481 (1189)
T ss_pred             CcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEeccccEEEEEEeccchhhhhhhhhhcccccccC
Confidence            776632 11110000011111111100  01233333445677777777888888875332110                


Q ss_pred             ---------eecc-----cCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295          979 ---------KQWV-----PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus       979 ---------~~~~-----~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
                               +.+.     ..+..++|.+++.|  .++|..+-..|.|.=+.+.+..+.....
T Consensus       482 Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n~y~  541 (1189)
T KOG2041|consen  482 DDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTNSYP  541 (1189)
T ss_pred             CCCccchhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeeeeccc
Confidence                     0000     11346678888875  5688888899999999999887766543

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.41  E-value=4e-10  Score=124.17  Aligned_cols=280  Identities=15%  Similarity=0.175  Sum_probs=174.9

Q ss_pred             CceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeec----CceEEEeeccccccCCCCccccccCccc
Q 001295          716 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS----NAIHLLWKWQRTERNSSGKATASVAPQL  791 (1106)
Q Consensus       716 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~  791 (1106)
                      +.|.+|+++....  .+..+..  ........-++++|++++|.++..    ++.|..|++...                
T Consensus        13 ~gI~~~~~d~~~g--~l~~~~~--~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~----------------   72 (345)
T PF10282_consen   13 GGIYVFRFDEETG--TLTLVQT--VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPD----------------   72 (345)
T ss_dssp             TEEEEEEEETTTT--EEEEEEE--EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETT----------------
T ss_pred             CcEEEEEEcCCCC--CceEeee--ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCC----------------
Confidence            6888888843221  2221111  013345567889999999988877    468888876532                


Q ss_pred             cCCCCCCcccc-ccCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCC-Cceeee---e----------cCCCCCe
Q 001295          792 WQPPSGIMMTN-DVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMT-FKTMAT---F----------MPPPPAA  854 (1106)
Q Consensus       792 w~~~~~~~~~~-~~~~~~~~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~-~~~~~~---~----------~~~~~~v  854 (1106)
                          +|.+... ...  ........++++|++++|+++.  +|.|.++++.. +.....   +          .......
T Consensus        73 ----~g~L~~~~~~~--~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~  146 (345)
T PF10282_consen   73 ----TGTLTLLNSVP--SGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHP  146 (345)
T ss_dssp             ----TTEEEEEEEEE--ESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCE
T ss_pred             ----cceeEEeeeec--cCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccc
Confidence                1211110 000  0345567899999999999997  79999999986 333222   1          1123457


Q ss_pred             eEEEEecCCCceEEEee-CCCcEEEEEeecce--EE--EEec-CcccCeeEEEEecCCCEEEEEc-CCCcEEEEeCC--C
Q 001295          855 TFLAFHPQDNNIIAIGM-DDSSIQIYNVRVDE--VK--SKLK-GHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSD--G  925 (1106)
Q Consensus       855 ~~l~~s~~d~~~la~g~-~dg~v~iwd~~~~~--~~--~~l~-~h~~~V~~l~~s~d~~~l~s~s-~Dg~i~vwd~~--~  925 (1106)
                      .++.|+| +++++++.. ....|++|++....  +.  ..+. .....-..++|+||++++.... .+++|.++++.  +
T Consensus       147 H~v~~~p-dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~  225 (345)
T PF10282_consen  147 HQVVFSP-DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSD  225 (345)
T ss_dssp             EEEEE-T-TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred             eeEEECC-CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccC
Confidence            8999999 777766653 34589999997654  32  2222 2334568899999999886554 57789999988  4


Q ss_pred             cccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE--eCCeEEEEecC--Cc--eEeeecccCCCCCCeeEEEECCCC
Q 001295          926 WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETT--KL--ECVKQWVPRESSAPITHATFSCDS  999 (1106)
Q Consensus       926 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~--~d~~v~i~d~~--~~--~~~~~~~~~~h~~~v~~l~~s~d~  999 (1106)
                      +.......+...............++++|||++|.++  ..+.|.+|++.  ++  +.+..+..  .......++++|||
T Consensus       226 g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~--~G~~Pr~~~~s~~g  303 (345)
T PF10282_consen  226 GSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT--GGKFPRHFAFSPDG  303 (345)
T ss_dssp             TEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE--SSSSEEEEEE-TTS
T ss_pred             CceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC--CCCCccEEEEeCCC
Confidence            4332222233222211111256789999999999995  56789999993  23  33444432  24458999999999


Q ss_pred             CEEEEEE-cCCeEEEEEc--CCceeEEe
Q 001295         1000 QLVYACF-LDATVCVFSA--ANLKLRCR 1024 (1106)
Q Consensus      1000 ~~l~t~s-~Dg~i~vwd~--~~~~~~~~ 1024 (1106)
                      ++|++++ .++.|.+|++  ++|.+...
T Consensus       304 ~~l~Va~~~s~~v~vf~~d~~tG~l~~~  331 (345)
T PF10282_consen  304 RYLYVANQDSNTVSVFDIDPDTGKLTPV  331 (345)
T ss_dssp             SEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred             CEEEEEecCCCeEEEEEEeCCCCcEEEe
Confidence            9998887 4568999876  57776543

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.41  E-value=1.4e-09  Score=110.21  Aligned_cols=282  Identities=9%  Similarity=0.086  Sum_probs=184.7

Q ss_pred             CCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecC---ceEEEeeccccccCCCCccccccCccc
Q 001295          715 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN---AIHLLWKWQRTERNSSGKATASVAPQL  791 (1106)
Q Consensus       715 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~  791 (1106)
                      +..|.+|++......-....+    .......+-++++|+.+.|.++..+   |.+.-|.+                   
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~----v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~i-------------------   71 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQL----VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRI-------------------   71 (346)
T ss_pred             CCceEEEEEeCcccccchhhh----ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEE-------------------
Confidence            578999999843322111111    2256778899999999988877664   56666654                   


Q ss_pred             cCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCC-Cceeee--ecCCCCC----------eeE
Q 001295          792 WQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMT-FKTMAT--FMPPPPA----------ATF  856 (1106)
Q Consensus       792 w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~-~~~~~~--~~~~~~~----------v~~  856 (1106)
                       |..+|.+....... ....+.+.++++++|++++++.  .|.|.++-+.. |.....  ...|.+.          +..
T Consensus        72 -D~~~G~Lt~ln~~~-~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~  149 (346)
T COG2706          72 -DPDDGRLTFLNRQT-LPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHS  149 (346)
T ss_pred             -cCCCCeEEEeeccc-cCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccce
Confidence             33344432211110 1233448899999999999998  58999999965 433222  1223333          788


Q ss_pred             EEEecCCCceEEEeeC-CCcEEEEEeecceEEEEec---CcccCeeEEEEecCCCEEEEEcC-CCcEEEEeCCC--cccc
Q 001295          857 LAFHPQDNNIIAIGMD-DSSIQIYNVRVDEVKSKLK---GHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDG--WEKQ  929 (1106)
Q Consensus       857 l~~s~~d~~~la~g~~-dg~v~iwd~~~~~~~~~l~---~h~~~V~~l~~s~d~~~l~s~s~-Dg~i~vwd~~~--~~~~  929 (1106)
                      ..|.| ++++|++.+- --.|.+|++..|++...-.   .-...-..|+|+|++++.....+ +++|.+|..+.  ++..
T Consensus       150 a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~  228 (346)
T COG2706         150 ANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFE  228 (346)
T ss_pred             eeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEE
Confidence            99999 8888877652 2379999999876542211   12344578999999998876664 88999999988  3333


Q ss_pred             cceeecccCCCCCCCCCCceEEEcCCCcEEEEEeC--CeEEEEecCC--ceEeeecccCCCCCCeeEEEECCCCCEEEEE
Q 001295          930 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE--TQLAIFETTK--LECVKQWVPRESSAPITHATFSCDSQLVYAC 1005 (1106)
Q Consensus       930 ~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d--~~v~i~d~~~--~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~ 1005 (1106)
                      ..+.+...............+..++||++|.++..  ..|.+|.+..  ++....-....+........|+++|++|+++
T Consensus       229 ~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa  308 (346)
T COG2706         229 ELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAA  308 (346)
T ss_pred             EeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEE
Confidence            33334444433444456788999999999999744  4688887644  3322221112345557889999999999988


Q ss_pred             EcCC-eEEEEEc--CCceeE
Q 001295         1006 FLDA-TVCVFSA--ANLKLR 1022 (1106)
Q Consensus      1006 s~Dg-~i~vwd~--~~~~~~ 1022 (1106)
                      .+|+ .|.+|.+  .+|++-
T Consensus       309 ~q~sd~i~vf~~d~~TG~L~  328 (346)
T COG2706         309 NQKSDNITVFERDKETGRLT  328 (346)
T ss_pred             ccCCCcEEEEEEcCCCceEE
Confidence            8764 5888866  455544

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=1.1e-10  Score=133.45  Aligned_cols=216  Identities=12%  Similarity=0.062  Sum_probs=140.2

Q ss_pred             CcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeC---CCeEEEEEccCCceeee
Q 001295          373 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS---RHIVQIYSYHGGDEVRQ  449 (1106)
Q Consensus       373 g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~---d~~v~iwd~~~~~~~~~  449 (1106)
                      ..|.+||........                    +..|...+.+.+|||||+.|+..+.   +..|.+||+.+++... 
T Consensus       182 ~~l~~~d~dg~~~~~--------------------lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-  240 (435)
T PRK05137        182 KRLAIMDQDGANVRY--------------------LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-  240 (435)
T ss_pred             eEEEEECCCCCCcEE--------------------EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-
Confidence            368888876543322                    4677889999999999999998763   4689999999886532 


Q ss_pred             eeeeccccCCeeEEEEcCCCCceEEEEecCCCc--EEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEec-CC-
Q 001295          450 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT--IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DG-  525 (1106)
Q Consensus       450 ~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~--i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg-  525 (1106)
                         +..+.+.+...+|+|||+. ++++.+.++.  |++||+.++.. ..+..+........|+++  |+.|+..+. +| 
T Consensus       241 ---l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spD--G~~i~f~s~~~g~  313 (435)
T PRK05137        241 ---VGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPD--GSQIVFESDRSGS  313 (435)
T ss_pred             ---eecCCCcccCcEECCCCCE-EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCC--CCEEEEEECCCCC
Confidence               4456677889999999995 3456665555  77789887764 456656666667777654  466665553 33 


Q ss_pred             -eEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECC---CeEEEEECCCccee
Q 001295          526 -KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD---FSIKFWDMDSVQLL  601 (1106)
Q Consensus       526 -~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~  601 (1106)
                       .|.+||+..... ..+......+...                     .|+|+|++++....+   ..|.+||+.++.. 
T Consensus       314 ~~Iy~~d~~g~~~-~~lt~~~~~~~~~---------------------~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-  370 (435)
T PRK05137        314 PQLYVMNADGSNP-RRISFGGGRYSTP---------------------VWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-  370 (435)
T ss_pred             CeEEEEECCCCCe-EEeecCCCcccCe---------------------EECCCCCEEEEEEcCCCceEEEEEECCCCce-
Confidence             577777654332 2222222223333                     455555566654432   4688899865543 


Q ss_pred             EEEccCCCCCCcCeEEEccCCCEEEEEeCC------CcEEEEEccCC
Q 001295          602 TSIDADGGLPASPRIRFNKDGCLLAVSTND------NGIKILATSDG  642 (1106)
Q Consensus       602 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d------g~i~iwd~~~~  642 (1106)
                      ..+...   ..+....|+|||+.|+..+.+      ..+.++|+..+
T Consensus       371 ~~lt~~---~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~  414 (435)
T PRK05137        371 RILTSG---FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR  414 (435)
T ss_pred             EeccCC---CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence            333321   136778999999998876553      24677776554

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.40  E-value=4.4e-11  Score=118.45  Aligned_cols=364  Identities=15%  Similarity=0.170  Sum_probs=215.1

Q ss_pred             cCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCC-Cc----eeEEEeccC------------CCeEEEeccccCCceEEE
Q 001295          457 VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-GA----KQYIFEGHE------------APVYSVCPHHKENIQFIF  519 (1106)
Q Consensus       457 ~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~----~~~~~~~h~------------~~v~~~~~~~~~~~~~l~  519 (1106)
                      ..-|.++.|...|.  +|++|..+|.|.++.-.. .+    ....++.|.            ..|..+.|....+...++
T Consensus        25 adiis~vef~~~Ge--~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL  102 (433)
T KOG1354|consen   25 ADIISAVEFDHYGE--RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL  102 (433)
T ss_pred             hcceeeEEeecccc--eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence            45789999999999  899999999999996432 21    233455454            357788888888888999


Q ss_pred             EEecCCeEEEEeCCCCCceeE-e----eCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEE
Q 001295          520 STALDGKIKAWLYDNLGSRVD-Y----EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWD  594 (1106)
Q Consensus       520 s~~~dg~i~iwd~~~~~~~~~-~----~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd  594 (1106)
                      ..+.|.+|++|.+........ +    ......++++..                           .+.+..|-.+.   
T Consensus       103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~---------------------------p~~~~~~~~ve---  152 (433)
T KOG1354|consen  103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRL---------------------------PVEGRHDLEVE---  152 (433)
T ss_pred             EecCCcceeeeeeeccccccccccccccCCCCccceeec---------------------------eeeccccceee---
Confidence            999999999998876443320 0    001111111111                           01111111110   


Q ss_pred             CCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhH
Q 001295          595 MDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAA  674 (1106)
Q Consensus       595 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  674 (1106)
                         ..+.+. -.+.|.-.|++++++.|+..++++. |=.|.+|++.-..+.                             
T Consensus       153 ---a~prRv-~aNaHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~s-----------------------------  198 (433)
T KOG1354|consen  153 ---ASPRRV-YANAHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQS-----------------------------  198 (433)
T ss_pred             ---eeeeee-ccccceeEeeeeeecCccceEeecc-ceeeeeccccccCCc-----------------------------
Confidence               011222 2344555799999999999988765 578999987532111                             


Q ss_pred             hhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCC
Q 001295          675 AAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNS  754 (1106)
Q Consensus       675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  754 (1106)
                                                                 ..+-|+..    ...       ..-..-|++..|+|.
T Consensus       199 -------------------------------------------FnIVDIKP----~nm-------EeLteVITsaEFhp~  224 (433)
T KOG1354|consen  199 -------------------------------------------FNIVDIKP----ANM-------EELTEVITSAEFHPH  224 (433)
T ss_pred             -------------------------------------------eeEEEccc----cCH-------HHHHHHHhhhccCHh
Confidence                                                       11122211    000       012345778888885


Q ss_pred             -CceEEEeecCceEEEeeccccccCCCCccccccCccccCC-CCCCccccccCCCCCCCCeeEEEEecCCCEEEEEeCCe
Q 001295          755 -GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQP-PSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGK  832 (1106)
Q Consensus       755 -~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~  832 (1106)
                       .+.++-+++.|+|++.|++.....       ....+++.. ..+.-... +.  +--..|..+.|+++|+++++-+--+
T Consensus       225 ~cn~f~YSSSKGtIrLcDmR~~aLC-------d~hsKlfEepedp~~rsf-fs--eiIsSISDvKFs~sGryilsRDylt  294 (433)
T KOG1354|consen  225 HCNVFVYSSSKGTIRLCDMRQSALC-------DAHSKLFEEPEDPSSRSF-FS--EIISSISDVKFSHSGRYILSRDYLT  294 (433)
T ss_pred             HccEEEEecCCCcEEEeechhhhhh-------cchhhhhccccCCcchhh-HH--HHhhhhhceEEccCCcEEEEeccce
Confidence             455666777899999998743211       111112211 11111100 11  1235688899999999999998899


Q ss_pred             EEEEEc-CCCceeeeecCCC------------CC---eeEEEEecCCCceEEEeeCCCcEEEEEeecceE-EEEecCccc
Q 001295          833 ISLFNM-MTFKTMATFMPPP------------PA---ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV-KSKLKGHSK  895 (1106)
Q Consensus       833 i~vwd~-~~~~~~~~~~~~~------------~~---v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~-~~~l~~h~~  895 (1106)
                      |++||+ ...+.+.++.-|.            ..   -..++|+. ++.++++|+....+++|++..|.. -.++.....
T Consensus       295 vk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~  373 (433)
T KOG1354|consen  295 VKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRK  373 (433)
T ss_pred             eEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccceEEEecCCCCcceeeccccccc
Confidence            999999 4556666665542            22   24688988 888999999999999999766542 223332222


Q ss_pred             C--eeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEE
Q 001295          896 R--ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIF  970 (1106)
Q Consensus       896 ~--V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~  970 (1106)
                      .  ...+   ..-+.+.+++......+|-. .        +..       ...+...+|+|....+|++..+.+.+|
T Consensus       374 ~~~~~~~---~k~~~V~~~g~r~~~~~~vd-~--------ldf-------~kkilh~aWhp~en~ia~aatnnlyif  431 (433)
T KOG1354|consen  374 NMKPRKV---LKLRLVSSSGKRKRDEISVD-A--------LDF-------RKKILHTAWHPKENSIAVAATNNLYIF  431 (433)
T ss_pred             CCccccc---ccceeeecCCCccccccccc-h--------hhh-------hhHHHhhccCCccceeeeeecCceEEe
Confidence            2  1111   11233444444433222210 0        100       024577899999999999877777776

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.40  E-value=7.8e-09  Score=107.04  Aligned_cols=171  Identities=15%  Similarity=0.166  Sum_probs=135.3

Q ss_pred             CCCEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCC-cEEEEEeecceEEEEecCcccCeeE
Q 001295          821 NDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS-SIQIYNVRVDEVKSKLKGHSKRITG  899 (1106)
Q Consensus       821 ~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg-~v~iwd~~~~~~~~~l~~h~~~V~~  899 (1106)
                      +|.+++..+.|+..|.+...+-.++.  ++.+.|.-..+.. +++-++.|..|| .+-|||..+++. ..+...-+.|.+
T Consensus       331 ~Gd~ia~VSRGkaFi~~~~~~~~iqv--~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~a  406 (668)
T COG4946         331 NGDYIALVSRGKAFIMRPWDGYSIQV--GKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEA  406 (668)
T ss_pred             CCcEEEEEecCcEEEECCCCCeeEEc--CCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCceE-EEeeCCccceEE
Confidence            78899999999988888776654433  4667798888888 677889999999 999999988764 556667788999


Q ss_pred             EEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eC----CeEEEEecCC
Q 001295          900 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE----TQLAIFETTK  974 (1106)
Q Consensus       900 l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d----~~v~i~d~~~  974 (1106)
                      |..++||++++.+.....|.+.|++++...   .+...+     .+-|+.+.|+|+++++|.+ -+    ..|++||+.+
T Consensus       407 v~vs~dGK~~vvaNdr~el~vididngnv~---~idkS~-----~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~  478 (668)
T COG4946         407 VKVSPDGKKVVVANDRFELWVIDIDNGNVR---LIDKSE-----YGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG  478 (668)
T ss_pred             EEEcCCCcEEEEEcCceEEEEEEecCCCee---Eecccc-----cceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence            999999999999999999999999997642   222111     1478999999999999986 33    4699999999


Q ss_pred             ceEeeecccCCCCCCeeEEEECCCCCEEEEEE
Q 001295          975 LECVKQWVPRESSAPITHATFSCDSQLVYACF 1006 (1106)
Q Consensus       975 ~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s 1006 (1106)
                      ++........+   .=.+-+|.||+++|..-+
T Consensus       479 ~Kiy~vTT~ta---~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         479 GKIYDVTTPTA---YDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             CeEEEecCCcc---cccCcccCCCCcEEEEEe
Confidence            98877655433   345678999999987655

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.40  E-value=4.8e-10  Score=118.95  Aligned_cols=154  Identities=10%  Similarity=0.121  Sum_probs=102.0

Q ss_pred             CCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEE
Q 001295          350 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV  429 (1106)
Q Consensus       350 ~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las  429 (1106)
                      ...++..++|++|+ ++|.+ .+..|.|++..+++.+...                    ... .++++.|||.|.+|.+
T Consensus        34 ~~~~~v~~~S~~G~-lfA~~-~~~~v~i~~~~~~~~~lt~--------------------~~~-~~~~L~fSP~g~yL~T   90 (566)
T KOG2315|consen   34 SRPCNVFAYSNNGR-LFAYS-DNQVVKVFEIATLKVVLCV--------------------ELK-KTYDLLFSPKGNYLLT   90 (566)
T ss_pred             CCcceeEEEcCCCc-EEEEE-cCCeEEEEEccCCcEEEEe--------------------ccc-eeeeeeeccccccccc
Confidence            34578899999999 47664 4688999999888644321                    112 6899999999999986


Q ss_pred             E-----eCC-----CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEec
Q 001295          430 A-----YSR-----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG  499 (1106)
Q Consensus       430 ~-----~~d-----~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  499 (1106)
                      -     ..+     ..+.+|+++++....   .+......-++..|+.|..   ++.--..+.+++|++.+-+.+. -.-
T Consensus        91 ~e~~~i~~~~~~~~pn~~v~~vet~~~~s---~~q~k~Q~~W~~qfs~dEs---l~arlv~nev~f~~~~~f~~~~-~kl  163 (566)
T KOG2315|consen   91 WEPWAIYGPKNASNPNVLVYNVETGVQRS---QIQKKMQNGWVPQFSIDES---LAARLVSNEVQFYDLGSFKTIQ-HKL  163 (566)
T ss_pred             ccccccccCCCCCCCceeeeeeccceehh---heehhhhcCcccccccchh---hhhhhhcceEEEEecCCcccee-eee
Confidence            2     222     347799999944322   1222122226899999986   4444445779999987643322 122


Q ss_pred             cCCCeEEEeccccCCceEEEE-----EecCCeEEEEeCC
Q 001295          500 HEAPVYSVCPHHKENIQFIFS-----TALDGKIKAWLYD  533 (1106)
Q Consensus       500 h~~~v~~~~~~~~~~~~~l~s-----~~~dg~i~iwd~~  533 (1106)
                      |...|+.+.+++.+.-..+++     .|.-+.|++|.+.
T Consensus       164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~  202 (566)
T KOG2315|consen  164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYP  202 (566)
T ss_pred             eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccc
Confidence            677888888887754444443     3556789999776

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.39  E-value=4.3e-11  Score=136.59  Aligned_cols=222  Identities=12%  Similarity=0.078  Sum_probs=137.3

Q ss_pred             eeeeccCCCCcEEEEEecCCCeEEEEEec---cCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEE
Q 001295          343 VTRTLNQGSSPMSMDFHPVQQTLLLVGTN---VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI  419 (1106)
Q Consensus       343 ~~~~~~h~~~v~~~~~sp~g~~llatg~~---dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~  419 (1106)
                      ...+..|...+.+.+|||||++ |+..+.   +..|.+||+.+++...                    +..+.+...+.+
T Consensus       196 ~~~lt~~~~~v~~p~wSpDg~~-la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~~~~g~~~~~~  254 (433)
T PRK04922        196 PQTILRSAEPILSPAWSPDGKK-LAYVSFERGRSAIYVQDLATGQREL--------------------VASFRGINGAPS  254 (433)
T ss_pred             ceEeecCCCccccccCCCCCCE-EEEEecCCCCcEEEEEECCCCCEEE--------------------eccCCCCccCce
Confidence            3444567788999999999997 554443   2469999998876543                    223334456789


Q ss_pred             EccCCCEEEE-EeCCC--eEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEec-CCCc--EEEEeCCCCce
Q 001295          420 WSPDGSLFGV-AYSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG-DDKT--IKVWDATNGAK  493 (1106)
Q Consensus       420 ~spdg~~las-~~~d~--~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~-~d~~--i~iwd~~~~~~  493 (1106)
                      |||||+.|+. .+.++  .|.+||+.+++...    +..|.......+|+|||+.  ++.++ .++.  |+++|+.+++.
T Consensus       255 ~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~----lt~~~~~~~~~~~spDG~~--l~f~sd~~g~~~iy~~dl~~g~~  328 (433)
T PRK04922        255 FSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR----LTNHFGIDTEPTWAPDGKS--IYFTSDRGGRPQIYRVAASGGSA  328 (433)
T ss_pred             ECCCCCEEEEEEeCCCCceEEEEECCCCCeEE----CccCCCCccceEECCCCCE--EEEEECCCCCceEEEEECCCCCe
Confidence            9999998864 44554  59999999876432    5556666678999999994  44433 4444  67777777664


Q ss_pred             eEEEeccCCCeEEEeccccCCceEEEEEecCC---eEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeecccee
Q 001295          494 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDG---KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG  570 (1106)
Q Consensus       494 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~  570 (1106)
                      . .+..+.......+|++  +|+.|+..+.++   .|.+||+.++... .+. +........|+                
T Consensus       329 ~-~lt~~g~~~~~~~~Sp--DG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~s----------------  387 (433)
T PRK04922        329 E-RLTFQGNYNARASVSP--DGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFA----------------  387 (433)
T ss_pred             E-EeecCCCCccCEEECC--CCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceEC----------------
Confidence            3 3332333444567755  456676654432   6899998765433 222 11122333444                


Q ss_pred             EEEEcCCCCEEEEEEC---CCeEEEEECCCcceeEEEccCCCCCCcCeEEEcc
Q 001295          571 VVQFDTTKNRFLAAGD---DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK  620 (1106)
Q Consensus       571 ~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  620 (1106)
                           |+|++++..+.   .+.|.++++.. .....+..+.  ..+...+|+|
T Consensus       388 -----pdG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~--g~~~~p~wsp  432 (433)
T PRK04922        388 -----PNGSMVLYATREGGRGVLAAVSTDG-RVRQRLVSAD--GEVREPAWSP  432 (433)
T ss_pred             -----CCCCEEEEEEecCCceEEEEEECCC-CceEEcccCC--CCCCCCccCC
Confidence                 44455555443   35688888854 4445454332  2466677776

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.39  E-value=2.8e-07  Score=112.44  Aligned_cols=471  Identities=12%  Similarity=0.133  Sum_probs=254.5

Q ss_pred             CCCcCeEEEEEccCCCEEEEEeCCCeEEEE----EccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEE
Q 001295          410 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIY----SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV  485 (1106)
Q Consensus       410 ~h~~~V~~l~~spdg~~las~~~d~~v~iw----d~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~i  485 (1106)
                      ...+.|.++.|-++...|+.+..+|.|.+.    +..+.. +..   ...-...|.+++||||+.  +|+....++++.+
T Consensus        73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~---VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~  146 (928)
T PF04762_consen   73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEI---VGSVDSGILAASWSPDEE--LLALVTGEGNLLL  146 (928)
T ss_pred             CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEE---EEEEcCcEEEEEECCCcC--EEEEEeCCCEEEE
Confidence            345789999999999999999999999999    544433 221   223457899999999999  5555555677766


Q ss_pred             EeCCCCceeE------------------------EEec------------------------cCCCeEEEeccccCCceE
Q 001295          486 WDATNGAKQY------------------------IFEG------------------------HEAPVYSVCPHHKENIQF  517 (1106)
Q Consensus       486 wd~~~~~~~~------------------------~~~~------------------------h~~~v~~~~~~~~~~~~~  517 (1106)
                      -+ ++...+.                        .|.|                        +...-..++|  .+||.+
T Consensus       147 mt-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISW--RGDG~y  223 (928)
T PF04762_consen  147 MT-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISW--RGDGEY  223 (928)
T ss_pred             Ee-ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEE--CCCCcE
Confidence            53 2211111                        1111                        1111223344  677788


Q ss_pred             EEEEec---C---CeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEEC---CC
Q 001295          518 IFSTAL---D---GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD---DF  588 (1106)
Q Consensus       518 l~s~~~---d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~  588 (1106)
                      +++.+.   .   ..+|+|+-+ +.....-.    ++.                 +--..++|.|.|+++++...   ..
T Consensus       224 FAVss~~~~~~~~R~iRVy~Re-G~L~stSE----~v~-----------------gLe~~l~WrPsG~lIA~~q~~~~~~  281 (928)
T PF04762_consen  224 FAVSSVEPETGSRRVIRVYSRE-GELQSTSE----PVD-----------------GLEGALSWRPSGNLIASSQRLPDRH  281 (928)
T ss_pred             EEEEEEEcCCCceeEEEEECCC-ceEEeccc----cCC-----------------CccCCccCCCCCCEEEEEEEcCCCc
Confidence            888775   2   468888654 11111111    111                 11234567777777777543   45


Q ss_pred             eEEEEECCCcceeEEEccC--CCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCC
Q 001295          589 SIKFWDMDSVQLLTSIDAD--GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT  666 (1106)
Q Consensus       589 ~i~iwd~~~~~~~~~~~~~--~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  666 (1106)
                      .|.+|.- +|-.-..|...  .....|..+.|++|+..||+...|. |.+|-..+-.-.++..-                
T Consensus       282 ~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei----------------  343 (928)
T PF04762_consen  282 DVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEI----------------  343 (928)
T ss_pred             EEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEE----------------
Confidence            6777774 44333333322  2234688999999999999988654 99997765521111100                


Q ss_pred             cCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccce
Q 001295          667 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI  746 (1106)
Q Consensus       667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i  746 (1106)
                                                                                           .+   .....+
T Consensus       344 ---------------------------------------------------------------------~~---~~~~~~  351 (928)
T PF04762_consen  344 ---------------------------------------------------------------------RF---SSSESV  351 (928)
T ss_pred             ---------------------------------------------------------------------Ec---cCCCCC
Confidence                                                                                 00   011222


Q ss_pred             EEEEEcCC-CceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEec-CCCE
Q 001295          747 SRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSY  824 (1106)
Q Consensus       747 ~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~  824 (1106)
                      ..+.|+|. ...|...+.+|.+..+++.                  |+...+..                  .+| |...
T Consensus       352 ~~~~Wdpe~p~~L~v~t~~g~~~~~~~~------------------~~v~~s~~------------------~~~~D~g~  395 (928)
T PF04762_consen  352 NFVKWDPEKPLRLHVLTSNGQYEIYDFA------------------WDVSRSPG------------------SSPNDNGT  395 (928)
T ss_pred             CceEECCCCCCEEEEEecCCcEEEEEEE------------------EEEEecCC------------------CCccCceE
Confidence            33666664 3346666665666665543                  11111100                  011 2223


Q ss_pred             EEEEeCCeEEEEEcCCCcee-----eeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceE--------EEEec
Q 001295          825 VMSASGGKISLFNMMTFKTM-----ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV--------KSKLK  891 (1106)
Q Consensus       825 l~~~sdg~i~vwd~~~~~~~-----~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~--------~~~l~  891 (1106)
                      +++..+.++.+-.++..-..     ..+. -...|.+++|++ ++..+|+-..||.|.+|.......        ...+.
T Consensus       396 vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~-~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~  473 (928)
T PF04762_consen  396 VAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSP-SNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSIS  473 (928)
T ss_pred             EEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeC-CCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcc
Confidence            33444456777776643321     2233 346799999999 666688889999999998643211        11111


Q ss_pred             ----------CcccCeeEEEEecCCCEEEEEcCC---CcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcE
Q 001295          892 ----------GHSKRITGLAFSHALNVLVSSGAD---SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH  958 (1106)
Q Consensus       892 ----------~h~~~V~~l~~s~d~~~l~s~s~D---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~  958 (1106)
                                .-...+..++|..+...++....+   ..+.++++...+... ........    ...+..+...++...
T Consensus       474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~  548 (928)
T PF04762_consen  474 LDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSA-SVESSTEV----DGVVLIISSSPDSGS  548 (928)
T ss_pred             cccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCce-eEEEEecc----CceEEEEeeCCCCcE
Confidence                      123457788898887776666554   568888874432111 11111111    123344444555543


Q ss_pred             EEE-EeCCeEEEEecCCceEe-eecccCCCCCCeeEEEECCCCC---EEEEEEcCCeEEEEEcCCceeEEeeCCCcccCC
Q 001295          959 FLV-VHETQLAIFETTKLECV-KQWVPRESSAPITHATFSCDSQ---LVYACFLDATVCVFSAANLKLRCRINPSAYLPA 1033 (1106)
Q Consensus       959 l~~-~~d~~v~i~d~~~~~~~-~~~~~~~h~~~v~~l~~s~d~~---~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~ 1033 (1106)
                      ++. ..+|.+..++....... ..+.  . .-+-..++...+..   .++.-+..|.+++    ++..++.         
T Consensus       549 ~~~q~~~G~v~~~~~~~~~~~~~~fp--~-~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~la~---------  612 (928)
T PF04762_consen  549 LYIQTNDGKVFQLSSDGELSQIVKFP--Q-PCPWMEVCQINGSEDKRVLFGLSSNGRLYA----NSRLLAS---------  612 (928)
T ss_pred             EEEEECCCEEEEeecCCCccccccCC--C-CCcEEEEEEECCccceeEEEEECCCCEEEE----CCEEEec---------
Confidence            343 67888886665543221 1221  1 11222222222322   3443344455554    3344421         


Q ss_pred             CCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeec
Q 001295         1034 GVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1070 (1106)
Q Consensus      1034 ~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~ 1070 (1106)
                      .     +.  ++..+   +.+|+-......+++.++.
T Consensus       613 ~-----~t--SF~v~---~~~Ll~TT~~h~l~fv~L~  639 (928)
T PF04762_consen  613 N-----CT--SFAVT---DSFLLFTTTQHTLKFVHLN  639 (928)
T ss_pred             C-----Cc--eEEEE---cCEEEEEecCceEEEEECc
Confidence            1     33  44444   3455555557778999888

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.39  E-value=6e-11  Score=119.93  Aligned_cols=255  Identities=12%  Similarity=0.092  Sum_probs=176.7

Q ss_pred             cCCCCcEEEEEecCCCeEEEEEe-ccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCE
Q 001295          348 NQGSSPMSMDFHPVQQTLLLVGT-NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  426 (1106)
Q Consensus       348 ~h~~~v~~~~~sp~g~~llatg~-~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~  426 (1106)
                      ...+.|..++|--+++.=+..+. .|..+.............    +||..         .......+|..++.. | ..
T Consensus        53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~---------~~~l~~~~I~gl~~~-d-g~  117 (412)
T KOG3881|consen   53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAK---------TVSLGTKSIKGLKLA-D-GT  117 (412)
T ss_pred             chhhhhhhheeecCCceeEeeccccCcccccccccCCccccc----ccccc---------ccccccccccchhhc-C-CE
Confidence            35578888888877764344444 555666666655444321    12221         234455677777664 3 36


Q ss_pred             EEEEeCCCeEEEEEccCCcee-eeeeeeccccCCeeEEEEcCCCCceEEEEecCC--CcEEEEeCCCCceeEEEec----
Q 001295          427 FGVAYSRHIVQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD--KTIKVWDATNGAKQYIFEG----  499 (1106)
Q Consensus       427 las~~~d~~v~iwd~~~~~~~-~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~----  499 (1106)
                      |++|-.+|.+.+|..+.+..- .....+..+ ..+..+.-++.... ++++||..  ..++|||++..+.+.+-+.    
T Consensus       118 Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD  195 (412)
T KOG3881|consen  118 LITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPND  195 (412)
T ss_pred             EEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCc
Confidence            777888999999999854311 011123323 56777887777775 67779998  8899999998866554332    


Q ss_pred             ---cCC--CeEEEeccccCCceEEEEEecCCeEEEEeCCCCCce-eEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEE
Q 001295          500 ---HEA--PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR-VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  573 (1106)
Q Consensus       500 ---h~~--~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~  573 (1106)
                         -.-  .++++.|.+..+...|++++.-+.+++||.+.+..+ ..+.....                     .+.++.
T Consensus       196 ~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~---------------------~is~~~  254 (412)
T KOG3881|consen  196 RLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLEN---------------------PISSTG  254 (412)
T ss_pred             cccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccC---------------------cceeee
Confidence               112  345666665544578999999999999999865433 23433334                     445555


Q ss_pred             EcCCCCEEEEEECCCeEEEEECCCcceeEE-EccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295          574 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTS-IDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       574 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                      ..|+++++++|..-+.+..||++.++.... +.+.  .+.++++..+|.++++++++-|..+||+|+.+.
T Consensus       255 l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~--tGsirsih~hp~~~~las~GLDRyvRIhD~ktr  322 (412)
T KOG3881|consen  255 LTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI--TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR  322 (412)
T ss_pred             ecCCCcEEEEecccchhheecccCceeeccccCCc--cCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence            566666899999999999999999988877 5544  457999999999999999999999999999985

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.38  E-value=8.5e-11  Score=134.19  Aligned_cols=215  Identities=13%  Similarity=0.152  Sum_probs=137.1

Q ss_pred             CcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeCC---CeEEEEEccCCceeee
Q 001295          373 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQ  449 (1106)
Q Consensus       373 g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d---~~v~iwd~~~~~~~~~  449 (1106)
                      ..|.+||........                    +..|...+.+.+|||||+.|+.++.+   ..|.+||+.+++... 
T Consensus       184 ~~l~i~D~~g~~~~~--------------------lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-  242 (433)
T PRK04922        184 YALQVADSDGYNPQT--------------------ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-  242 (433)
T ss_pred             EEEEEECCCCCCceE--------------------eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-
Confidence            468899986443321                    45667789999999999999988643   469999999876532 


Q ss_pred             eeeeccccCCeeEEEEcCCCCceEEEEecCCC--cEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEe-cCCe
Q 001295          450 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDGK  526 (1106)
Q Consensus       450 ~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~  526 (1106)
                         +..+.+...+.+|+|||+. ++++.+.++  .|++||+.+++. ..+..+.......+|++  +|+.|+.++ .+|.
T Consensus       243 ---l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~sp--DG~~l~f~sd~~g~  315 (433)
T PRK04922        243 ---VASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAP--DGKSIYFTSDRGGR  315 (433)
T ss_pred             ---eccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECC--CCCEEEEEECCCCC
Confidence               3334455668899999996 334545554  699999988774 44555655556677755  456666655 4554


Q ss_pred             --EEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECC---CeEEEEECCCccee
Q 001295          527 --IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD---FSIKFWDMDSVQLL  601 (1106)
Q Consensus       527 --i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~  601 (1106)
                        |.++|+.+++. ..+.........                     .+|+|+|++++..+.+   ..|.+||+.+++..
T Consensus       316 ~~iy~~dl~~g~~-~~lt~~g~~~~~---------------------~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~  373 (433)
T PRK04922        316 PQIYRVAASGGSA-ERLTFQGNYNAR---------------------ASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR  373 (433)
T ss_pred             ceEEEEECCCCCe-EEeecCCCCccC---------------------EEECCCCCEEEEEECCCCceeEEEEECCCCCeE
Confidence              55555554332 111111122223                     4555555566665433   36999999887755


Q ss_pred             EEEccCCCCCCcCeEEEccCCCEEEEEeCC---CcEEEEEccC
Q 001295          602 TSIDADGGLPASPRIRFNKDGCLLAVSTND---NGIKILATSD  641 (1106)
Q Consensus       602 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d---g~i~iwd~~~  641 (1106)
                       .+.. ..  ......|+|||++++..+.+   +.|.+++...
T Consensus       374 -~Lt~-~~--~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g  412 (433)
T PRK04922        374 -TLTP-GS--LDESPSFAPNGSMVLYATREGGRGVLAAVSTDG  412 (433)
T ss_pred             -ECCC-CC--CCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence             3332 11  34567999999998877653   3467777643

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.38  E-value=7.4e-10  Score=122.08  Aligned_cols=253  Identities=14%  Similarity=0.203  Sum_probs=163.8

Q ss_pred             CCCeeEEEEecCCCEEEEEeC-----CeEEEEEcCCC--ce--eeeecCCCCCeeEEEEecCCCceEEEee-CCCcEEEE
Q 001295          810 EEAVPCFALSKNDSYVMSASG-----GKISLFNMMTF--KT--MATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIY  879 (1106)
Q Consensus       810 ~~~v~~l~~s~~~~~l~~~sd-----g~i~vwd~~~~--~~--~~~~~~~~~~v~~l~~s~~d~~~la~g~-~dg~v~iw  879 (1106)
                      ......++++|++++|.+...     +.|..|++...  ++  +............++++| ++++|+++. .+|.|.++
T Consensus        36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~-~g~~l~vany~~g~v~v~  114 (345)
T PF10282_consen   36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDP-DGRFLYVANYGGGSVSVF  114 (345)
T ss_dssp             SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECT-TSSEEEEEETTTTEEEEE
T ss_pred             CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEec-CCCEEEEEEccCCeEEEE
Confidence            445677899999999998862     57888888753  32  233332345567899999 777777765 58999999


Q ss_pred             Eeec-ceEEEE---ec----------CcccCeeEEEEecCCCEEEEEcC-CCcEEEEeCCCcc--cccceeecccCCCCC
Q 001295          880 NVRV-DEVKSK---LK----------GHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDGWE--KQKNRFLQIPTGRTP  942 (1106)
Q Consensus       880 d~~~-~~~~~~---l~----------~h~~~V~~l~~s~d~~~l~s~s~-Dg~i~vwd~~~~~--~~~~~~~~~~~~~~~  942 (1106)
                      ++.. |.+...   +.          .-.....++.|+|||++|++... ...|.+|+++...  ......+....+   
T Consensus       115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G---  191 (345)
T PF10282_consen  115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG---  191 (345)
T ss_dssp             EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT---
T ss_pred             EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccC---
Confidence            9986 443322   21          11244678999999998887642 3469999998754  222222333433   


Q ss_pred             CCCCCceEEEcCCCcEEEEE--eCCeEEEEecC--Cce--EeeecccC--CC--CCCeeEEEECCCCCEEEEEE-cCCeE
Q 001295          943 TAQSDTRVQFHQDQIHFLVV--HETQLAIFETT--KLE--CVKQWVPR--ES--SAPITHATFSCDSQLVYACF-LDATV 1011 (1106)
Q Consensus       943 ~~~~i~~~~~s~dg~~l~~~--~d~~v~i~d~~--~~~--~~~~~~~~--~h--~~~v~~l~~s~d~~~l~t~s-~Dg~i 1011 (1106)
                        ...+.++|+||++++.+.  .++.|.+|++.  ++.  .+..+...  +.  ......|+++|||++|+++. .+.+|
T Consensus       192 --~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI  269 (345)
T PF10282_consen  192 --SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSI  269 (345)
T ss_dssp             --SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEE
T ss_pred             --CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEE
Confidence              356999999999999884  56789999988  432  22222211  11  23688999999999988766 45789


Q ss_pred             EEEEcC--CceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEe-CCCcEEEEeecCCCCccC
Q 001295         1012 CVFSAA--NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL-SDGGVHVFEPLESEGKWG 1077 (1106)
Q Consensus      1012 ~vwd~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~-~Dg~v~vW~~~~~~~~~~ 1077 (1106)
                      .+|+++  +|++.. +.   ..+.    ....|..++++| ||++|+++. .++.|.+|+++...+.|.
T Consensus       270 ~vf~~d~~~g~l~~-~~---~~~~----~G~~Pr~~~~s~-~g~~l~Va~~~s~~v~vf~~d~~tG~l~  329 (345)
T PF10282_consen  270 SVFDLDPATGTLTL-VQ---TVPT----GGKFPRHFAFSP-DGRYLYVANQDSNTVSVFDIDPDTGKLT  329 (345)
T ss_dssp             EEEEECTTTTTEEE-EE---EEEE----SSSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred             EEEEEecCCCceEE-EE---EEeC----CCCCccEEEEeC-CCCEEEEEecCCCeEEEEEEeCCCCcEE
Confidence            999993  344322 21   1111    114567899999 688877666 667999999975554443

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.37  E-value=4.6e-11  Score=118.33  Aligned_cols=155  Identities=11%  Similarity=0.216  Sum_probs=108.3

Q ss_pred             eEEEEecCCCceEEEeeC----------CCcEEEEEeec-ceEEEEecC-cccCeeEEEEecCCCEEEEE--cCCCcEEE
Q 001295          855 TFLAFHPQDNNIIAIGMD----------DSSIQIYNVRV-DEVKSKLKG-HSKRITGLAFSHALNVLVSS--GADSQLCV  920 (1106)
Q Consensus       855 ~~l~~s~~d~~~la~g~~----------dg~v~iwd~~~-~~~~~~l~~-h~~~V~~l~~s~d~~~l~s~--s~Dg~i~v  920 (1106)
                      ..+.|++ .|.+|++-..          -|...+|.+.. +.....+.- ..++|.+++|+|+|..+|..  ..++.|.+
T Consensus         9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l   87 (194)
T PF08662_consen    9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL   87 (194)
T ss_pred             EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence            4567788 5655544332          13455555533 233334432 34579999999999987654  45789999


Q ss_pred             EeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEe----CCeEEEEecCCceEeeecccCCCCCCeeEEEEC
Q 001295          921 WSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH----ETQLAIFETTKLECVKQWVPRESSAPITHATFS  996 (1106)
Q Consensus       921 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~----d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s  996 (1106)
                      ||++. +    ...... .     ..+..+.|||+|++|++++    .|.+.+||+++.+.+....    ...++.++||
T Consensus        88 yd~~~-~----~i~~~~-~-----~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~----~~~~t~~~Ws  152 (194)
T PF08662_consen   88 YDVKG-K----KIFSFG-T-----QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE----HSDATDVEWS  152 (194)
T ss_pred             EcCcc-c----EeEeec-C-----CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc----cCcEEEEEEc
Confidence            99973 1    122222 1     2557899999999999942    4679999999999887764    3457999999


Q ss_pred             CCCCEEEEEEc------CCeEEEEEcCCceeEEeeC
Q 001295          997 CDSQLVYACFL------DATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus       997 ~d~~~l~t~s~------Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
                      |||++|+++..      |..++||++. |+++.+..
T Consensus       153 PdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~  187 (194)
T PF08662_consen  153 PDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP  187 (194)
T ss_pred             CCCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence            99999998874      7889999985 66766554

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.37  E-value=7.7e-11  Score=133.92  Aligned_cols=223  Identities=14%  Similarity=0.119  Sum_probs=133.1

Q ss_pred             eeeccCCCCcEEEEEecCCCeEEEEEecc--CcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEc
Q 001295          344 TRTLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  421 (1106)
Q Consensus       344 ~~~~~h~~~v~~~~~sp~g~~llatg~~d--g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s  421 (1106)
                      .....+...+.+.+|||||++|+++...+  ..|.+||+.+++...                    +....+.+.+.+||
T Consensus       189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--------------------l~~~~g~~~~~~~S  248 (427)
T PRK02889        189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--------------------VANFKGSNSAPAWS  248 (427)
T ss_pred             eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------eecCCCCccceEEC
Confidence            34456788899999999999744433222  359999999886543                    22233456789999


Q ss_pred             cCCCEEEE-EeCCCeEEEEEc--cCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeC--CCCceeEE
Q 001295          422 PDGSLFGV-AYSRHIVQIYSY--HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA--TNGAKQYI  496 (1106)
Q Consensus       422 pdg~~las-~~~d~~v~iwd~--~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~--~~~~~~~~  496 (1106)
                      |||+.|+. .+.++...||.+  .++. .+   .+..|...+....|+|||+. +++++..++...||.+  .+++. ..
T Consensus       249 PDG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~-l~f~s~~~g~~~Iy~~~~~~g~~-~~  322 (427)
T PRK02889        249 PDGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRS-IYFTSDRGGAPQIYRMPASGGAA-QR  322 (427)
T ss_pred             CCCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCE-EEEEecCCCCcEEEEEECCCCce-EE
Confidence            99999875 567777666654  4443 22   35556666778899999995 2334444566666654  44443 22


Q ss_pred             EeccCCCeEEEeccccCCceEEEEEecCC---eEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEE
Q 001295          497 FEGHEAPVYSVCPHHKENIQFIFSTALDG---KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  573 (1106)
Q Consensus       497 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~  573 (1106)
                      +..+........|+  ++|++|+..+.++   .|.+||+.++.... +.. ........|+||                 
T Consensus       323 lt~~g~~~~~~~~S--pDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spd-----------------  381 (427)
T PRK02889        323 VTFTGSYNTSPRIS--PDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTD-TTRDESPSFAPN-----------------  381 (427)
T ss_pred             EecCCCCcCceEEC--CCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccC-CCCccCceECCC-----------------
Confidence            22222333345664  4557777766554   69999987754332 211 112233444554                 


Q ss_pred             EcCCCCEEEEEECCC---eEEEEECCCcceeEEEccCCCCCCcCeEEEcc
Q 001295          574 FDTTKNRFLAAGDDF---SIKFWDMDSVQLLTSIDADGGLPASPRIRFNK  620 (1106)
Q Consensus       574 ~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  620 (1106)
                          ++.|+..+.++   .+++.++ ++.....+..+.  ..+...+|+|
T Consensus       382 ----g~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~--g~~~~p~wsp  424 (427)
T PRK02889        382 ----GRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQG--GDVREPSWGP  424 (427)
T ss_pred             ----CCEEEEEEecCCCEEEEEEEC-CCCceEEeecCC--CCCCCCccCC
Confidence                44565554322   4566666 455555554332  2466678876

>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]

Probab=99.36  E-value=5.3e-12  Score=120.49  Aligned_cols=163  Identities=19%  Similarity=0.273  Sum_probs=122.7

Q ss_pred             hHHHHHHHHHHHhHhcHHHHHHHHHHhhCCCcc---------HHHHHHHHhcCCHHHHHHHhcccccccCccccchhhhH
Q 001295            5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN---------MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFE   75 (1106)
Q Consensus         5 ~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~~~---------~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~   75 (1106)
                      +.|+.+||+.||-..||.++|+.+.+|+|+..+         -..++.+|..|+-++|+..+..+. ...-+..+.+.|.
T Consensus        26 ~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~-PeiLd~n~~l~F~  104 (228)
T KOG2659|consen   26 REDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN-PEILDTNRELFFH  104 (228)
T ss_pred             hhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC-hHHHccchhHHHH
Confidence            678999999999999999999999999999872         568899999999999999999883 2222233449999


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccccccchhhccCCC--chHHHHHHHHHHHhhhcc
Q 001295           76 IRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD--TKSARSIMLVELKKLIEA  153 (1106)
Q Consensus        76 i~~q~~lEll~~~~~~~A~~~l~~~l~~l~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~--~~~~r~~l~~~l~~~~~~  153 (1106)
                      +.+|+++||+..+..++|++++|.++.|+...+++.++.|...|..--++ .........  ....|.++...+...|-.
T Consensus       105 Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~-~~~~sp~~~l~~~s~R~kvA~~vN~aiL~  183 (228)
T KOG2659|consen  105 LQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFE-LSQESPSAELLSQSLRQKVASEVNSAILA  183 (228)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcC-CcccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999887888888877777554443 222121111  345577777776554433


Q ss_pred             CCCCcCcCCchhhHhh
Q 001295          154 NPLFRDKLQFPNLKNS  169 (1106)
Q Consensus       154 ~~~~~~~~rl~~l~~q  169 (1106)
                      .--.....+|.-|+..
T Consensus       184 ~~~~~~~~~l~~llk~  199 (228)
T KOG2659|consen  184 SQEHESEPKLPFLLKL  199 (228)
T ss_pred             HhcccccchHHHHHHH
Confidence            2222222278888744

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.36  E-value=8.2e-11  Score=118.99  Aligned_cols=115  Identities=15%  Similarity=0.185  Sum_probs=100.5

Q ss_pred             eEEEEecC--CCEEEEEe-CCeEEEEEcCCC-ceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEE
Q 001295          814 PCFALSKN--DSYVMSAS-GGKISLFNMMTF-KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK  889 (1106)
Q Consensus       814 ~~l~~s~~--~~~l~~~s-dg~i~vwd~~~~-~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~  889 (1106)
                      +.+.|-+.  ...+|++. -+.+++||.+.+ +.+..+.-...+++++...| ++++|++|..-|.+..||+..++++..
T Consensus       206 tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl~g~  284 (412)
T KOG3881|consen  206 TDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGKLLGC  284 (412)
T ss_pred             ccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC-CCcEEEEecccchhheecccCceeecc
Confidence            44556555  67788888 699999999865 45667777788999999999 999999999999999999999998877


Q ss_pred             -ecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccc
Q 001295          890 -LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQ  929 (1106)
Q Consensus       890 -l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~  929 (1106)
                       +.+-.+.|.++..+|.+++|+++|-|+.|||+|+++.+..
T Consensus       285 ~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll  325 (412)
T KOG3881|consen  285 GLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL  325 (412)
T ss_pred             ccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence             8999999999999999999999999999999999995543

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.34  E-value=1.3e-10  Score=115.09  Aligned_cols=276  Identities=13%  Similarity=0.210  Sum_probs=174.2

Q ss_pred             cCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcce---eEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCC
Q 001295          348 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRER---LVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  424 (1106)
Q Consensus       348 ~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg  424 (1106)
                      ...+-|.++.|..+|.+ ||||..+|.|.++.-+....   .....|+..+.     .+-...-..-...|..+.|.+++
T Consensus        23 teadiis~vef~~~Ge~-LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshep-----EFDYLkSleieEKinkIrw~~~~   96 (433)
T KOG1354|consen   23 TEADIISAVEFDHYGER-LATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEP-----EFDYLKSLEIEEKINKIRWLDDG   96 (433)
T ss_pred             chhcceeeEEeecccce-EeecCCCCeEEEeecccccccceeeeeeeeccCc-----ccchhhhhhhhhhhhhceecCCC
Confidence            35678999999999996 99999999999997543222   11111211111     00000001223578999999965


Q ss_pred             C--EEEEEeCCCeEEEEEccCCceee--------------------------------eeee-eccccCCeeEEEEcCCC
Q 001295          425 S--LFGVAYSRHIVQIYSYHGGDEVR--------------------------------QHLE-IDAHVGGVNDIAFSHPN  469 (1106)
Q Consensus       425 ~--~las~~~d~~v~iwd~~~~~~~~--------------------------------~~~~-l~~h~~~V~~~~~s~d~  469 (1106)
                      .  .++..+.|.+|++|.+.......                                +... -.+|.--|++|.++.|.
T Consensus        97 n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~  176 (433)
T KOG1354|consen   97 NLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK  176 (433)
T ss_pred             CccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc
Confidence            4  56677899999999876321110                                0001 13577779999999999


Q ss_pred             CceEEEEecCCCcEEEEeCCCCceeE---EEec-----cCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCcee--
Q 001295          470 KQLCVITCGDDKTIKVWDATNGAKQY---IFEG-----HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV--  539 (1106)
Q Consensus       470 ~~~~l~s~~~d~~i~iwd~~~~~~~~---~~~~-----h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--  539 (1106)
                      .  .++++ +|=.|.+|+++--..-.   .++.     -+..|++..|+|... ++++-.+..|+|++.|++....-.  
T Consensus       177 E--t~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c-n~f~YSSSKGtIrLcDmR~~aLCd~h  252 (433)
T KOG1354|consen  177 E--TFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC-NVFVYSSSKGTIRLCDMRQSALCDAH  252 (433)
T ss_pred             c--eEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc-cEEEEecCCCcEEEeechhhhhhcch
Confidence            8  56665 47889999987432222   2222     234578888988755 688888889999999998432111  


Q ss_pred             --EeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEEC-CCcceeEEEccCCC-------
Q 001295          540 --DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM-DSVQLLTSIDADGG-------  609 (1106)
Q Consensus       540 --~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~-~~~~~~~~~~~~~~-------  609 (1106)
                        .+..+..+..        + -+...--..|..+.|+.+|+++++-+. -+|++||+ ...+++.++..|..       
T Consensus       253 sKlfEepedp~~--------r-sffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~  322 (433)
T KOG1354|consen  253 SKLFEEPEDPSS--------R-SFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCS  322 (433)
T ss_pred             hhhhccccCCcc--------h-hhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHH
Confidence              1111111111        0 000111124556777777778877543 58999999 45667777665432       


Q ss_pred             ---CCCc---CeEEEccCCCEEEEEeCCCcEEEEEccCCc
Q 001295          610 ---LPAS---PRIRFNKDGCLLAVSTNDNGIKILATSDGI  643 (1106)
Q Consensus       610 ---~~~v---~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~  643 (1106)
                         ...|   ..++|+.++.++++|+....+++++...|.
T Consensus       323 lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  323 LYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             HhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence               1122   358899999999999999999999976663

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.34  E-value=1.6e-10  Score=131.33  Aligned_cols=192  Identities=11%  Similarity=0.118  Sum_probs=123.2

Q ss_pred             cCCCCcCeEEEEEccCCCEEEEEeCC---CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEE
Q 001295          408 VKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK  484 (1106)
Q Consensus       408 ~~~h~~~V~~l~~spdg~~las~~~d---~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~  484 (1106)
                      +..+...+.+.+|||||+.|+..+.+   ..|.+||+.+++...    +....+.+.+.+|+|||+. ++++.+.++...
T Consensus       191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~  265 (427)
T PRK02889        191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----VANFKGSNSAPAWSPDGRT-LAVALSRDGNSQ  265 (427)
T ss_pred             eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEEccCCCce
Confidence            34667789999999999999987643   469999999887543    3333455678999999995 344667788766


Q ss_pred             EEeC--CCCceeEEEeccCCCeEEEeccccCCceEEEEEe-cCCeEEEEeCCCCC-ceeEeeCCCCeeEEEEEecCCCeE
Q 001295          485 VWDA--TNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRT  560 (1106)
Q Consensus       485 iwd~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~  560 (1106)
                      ||.+  .++. ...+..+........|++  ||+.|+..+ .+|...+|.++... ....+.......            
T Consensus       266 Iy~~d~~~~~-~~~lt~~~~~~~~~~wSp--DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~------------  330 (427)
T PRK02889        266 IYTVNADGSG-LRRLTQSSGIDTEPFFSP--DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYN------------  330 (427)
T ss_pred             EEEEECCCCC-cEECCCCCCCCcCeEEcC--CCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCc------------
Confidence            6654  4443 556665655566677765  456666554 35666777654211 111111111111            


Q ss_pred             EEeeeccceeEEEEcCCCCEEEEEECCC---eEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCC
Q 001295          561 YQGFRKRSLGVVQFDTTKNRFLAAGDDF---SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN  632 (1106)
Q Consensus       561 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg  632 (1106)
                               ....|+|+|++++..+.++   .|.+||+.+++...... .   .......|+|||+.|+..+.++
T Consensus       331 ---------~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~-~---~~~~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        331 ---------TSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD-T---TRDESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             ---------CceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC-C---CCccCceECCCCCEEEEEEecC
Confidence                     1245666666777665443   69999998887543322 2   1246789999999998887654

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.33  E-value=5.6e-09  Score=105.81  Aligned_cols=257  Identities=12%  Similarity=0.194  Sum_probs=175.0

Q ss_pred             CCCCeeEEEEecCCCEEEEEe----CCeEEEEEcCC--Cceee--eecCCCCCeeEEEEecCCCceEEEee-CCCcEEEE
Q 001295          809 PEEAVPCFALSKNDSYVMSAS----GGKISLFNMMT--FKTMA--TFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIY  879 (1106)
Q Consensus       809 ~~~~v~~l~~s~~~~~l~~~s----dg~i~vwd~~~--~~~~~--~~~~~~~~v~~l~~s~~d~~~la~g~-~dg~v~iw  879 (1106)
                      ....++-++++|+++.|.++.    +|.|..|.++.  |++..  .......+-+.+++++ ++++|+++. ..|.|.++
T Consensus        38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~  116 (346)
T COG2706          38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVSVY  116 (346)
T ss_pred             ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEEEE
Confidence            567788999999999998885    36788887764  44322  2222233448899999 888888776 45799999


Q ss_pred             Eeec-ceEEE--EecCcccC----------eeEEEEecCCCEEEEEc--CCCcEEEEeCCCcccccceeecccCCCCCCC
Q 001295          880 NVRV-DEVKS--KLKGHSKR----------ITGLAFSHALNVLVSSG--ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA  944 (1106)
Q Consensus       880 d~~~-~~~~~--~l~~h~~~----------V~~l~~s~d~~~l~s~s--~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  944 (1106)
                      -++. |.+..  .+..|.+.          +....|.|++++|++.+  .|. |.+|+++.++...........|     
T Consensus       117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dr-i~~y~~~dg~L~~~~~~~v~~G-----  190 (346)
T COG2706         117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDR-IFLYDLDDGKLTPADPAEVKPG-----  190 (346)
T ss_pred             EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCce-EEEEEcccCccccccccccCCC-----
Confidence            9865 43322  12235554          88899999999999875  454 9999999877655444444444     


Q ss_pred             CCCceEEEcCCCcEEEEE--eCCeEEEEecCCc--e--Eee---ecccCC-CCCCeeEEEECCCCCEEEEEEc-CCeEEE
Q 001295          945 QSDTRVQFHQDQIHFLVV--HETQLAIFETTKL--E--CVK---QWVPRE-SSAPITHATFSCDSQLVYACFL-DATVCV 1013 (1106)
Q Consensus       945 ~~i~~~~~s~dg~~l~~~--~d~~v~i~d~~~~--~--~~~---~~~~~~-h~~~v~~l~~s~d~~~l~t~s~-Dg~i~v 1013 (1106)
                      ...+.++|+|++++..+.  -+++|.+|.....  +  .+.   .+..+- .......|.+++||++|.++.. ...|.+
T Consensus       191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~  270 (346)
T COG2706         191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV  270 (346)
T ss_pred             CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence            456999999999988873  6789999998773  2  111   121111 1556788999999999997753 236888


Q ss_pred             EEcCC--ceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCC-cEEEEeecCCCCccCCCCC
Q 001295         1014 FSAAN--LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG-GVHVFEPLESEGKWGVPPP 1081 (1106)
Q Consensus      1014 wd~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg-~v~vW~~~~~~~~~~~~~~ 1081 (1106)
                      |.+..  +++. .+.  ...     .....|-...|.+ ++++|+++..|+ +|.++.++...+.+.....
T Consensus       271 f~V~~~~g~L~-~~~--~~~-----teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~  332 (346)
T COG2706         271 FSVDPDGGKLE-LVG--ITP-----TEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKETGRLTLLGR  332 (346)
T ss_pred             EEEcCCCCEEE-EEE--Eec-----cCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCCceEEeccc
Confidence            87743  3332 221  011     2224566789998 578888777664 7999999877766665443

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.32  E-value=7.5e-09  Score=110.13  Aligned_cols=205  Identities=12%  Similarity=0.087  Sum_probs=126.0

Q ss_pred             eEEEEecCCCEEEEEe---CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeec-ceEE--
Q 001295          814 PCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVK--  887 (1106)
Q Consensus       814 ~~l~~s~~~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~-~~~~--  887 (1106)
                      ..++++|||++|.+..   +..|.+.|+.+++.+.++....+ ..-...+. +..++  -+.||......+.+ |+..  
T Consensus       108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~-~~vy~t~e-~~~~~--~~~Dg~~~~v~~d~~g~~~~~  183 (352)
T TIGR02658       108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC-YHIFPTAN-DTFFM--HCRDGSLAKVGYGTKGNPKIK  183 (352)
T ss_pred             ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC-cEEEEecC-CccEE--EeecCceEEEEecCCCceEEe
Confidence            3567778888777664   57788888888888777764221 11222221 22221  22344444333322 2211  


Q ss_pred             --EEecCcccCee-EEEEec-CCCEEEEEcCCCcEEEEeCCCcccccceeecccCCC----CCCCCCCceEEEcCCCcEE
Q 001295          888 --SKLKGHSKRIT-GLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR----TPTAQSDTRVQFHQDQIHF  959 (1106)
Q Consensus       888 --~~l~~h~~~V~-~l~~s~-d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~s~dg~~l  959 (1106)
                        ..+.+-...+. .-.|++ ||+++..... |+|.+-|+...+.............    .-.......++++++++.+
T Consensus       184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~l  262 (352)
T TIGR02658       184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRI  262 (352)
T ss_pred             eeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEE
Confidence              11111011110 014456 8888877766 9999999765443332222222111    0111344459999999988


Q ss_pred             EEEe---C--------CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCC-EEEEEE-cCCeEEEEEcCCceeEEeeC
Q 001295          960 LVVH---E--------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus       960 ~~~~---d--------~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~-~l~t~s-~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
                      .+..   .        +.|.++|..+++.+..+..   ...+..++++||++ +|++.+ .++.|.|+|..+++.+..+.
T Consensus       263 yV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v---G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~  339 (352)
T TIGR02658       263 YLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL---GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN  339 (352)
T ss_pred             EEEecCCccccccCCCCEEEEEECCCCeEEEEEeC---CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence            8731   2        5799999999999998875   45899999999999 777666 57889999999999998873

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.31  E-value=1.1e-09  Score=115.57  Aligned_cols=327  Identities=12%  Similarity=0.180  Sum_probs=198.7

Q ss_pred             CeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecC-----------CCc
Q 001295          414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD-----------DKT  482 (1106)
Q Consensus       414 ~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~-----------d~~  482 (1106)
                      .=+.+.|||-|.||++--..| |.+|--.+-..++   .+ .|. .|..+.|||..+  +|+|-+.           ...
T Consensus       212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~---RF-~Hp-~Vq~idfSP~Ek--YLVT~s~~p~~~~~~d~e~~~  283 (698)
T KOG2314|consen  212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQ---RF-YHP-GVQFIDFSPNEK--YLVTYSPEPIIVEEDDNEGQQ  283 (698)
T ss_pred             eeeeEEecCCceEEEEEeccc-eeeecCccHHHHH---hc-cCC-CceeeecCCccc--eEEEecCCccccCcccCCCce
Confidence            457899999999999987777 8999765544443   33 354 589999999999  7888652           257


Q ss_pred             EEEEeCCCCceeEEEecc--CCCeEEE-eccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCe
Q 001295          483 IKVWDATNGAKQYIFEGH--EAPVYSV-CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR  559 (1106)
Q Consensus       483 i~iwd~~~~~~~~~~~~h--~~~v~~~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~  559 (1106)
                      ++|||+.+|...+.|...  ...++.+ .|+  .|+++++.-.. ..|.+|+..+...+-.-...-..|....|+|.+..
T Consensus       284 l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS--~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~l  360 (698)
T KOG2314|consen  284 LIIWDIATGLLKRSFPVIKSPYLKWPIFRWS--HDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNL  360 (698)
T ss_pred             EEEEEccccchhcceeccCCCccccceEEec--cCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcce
Confidence            999999999999888762  2333333 454  44477776665 56889987664433322333345666666666541


Q ss_pred             EEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEc
Q 001295          560 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT  639 (1106)
Q Consensus       560 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~  639 (1106)
                      +.           -|.|..+     ..-..+.+-.+.+++.+++-..+.-  .-..+-|-.+|.+|+.-..-.+      
T Consensus       361 lA-----------Ywtpe~~-----~~parvtL~evPs~~~iRt~nlfnV--sDckLhWQk~gdyLcvkvdR~t------  416 (698)
T KOG2314|consen  361 LA-----------YWTPETN-----NIPARVTLMEVPSKREIRTKNLFNV--SDCKLHWQKSGDYLCVKVDRHT------  416 (698)
T ss_pred             EE-----------EEccccc-----CCcceEEEEecCccceeeeccceee--eccEEEeccCCcEEEEEEEeec------
Confidence            11           1111111     1123566677777777766554321  1124667778888876432100      


Q ss_pred             cCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCcee
Q 001295          640 SDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSK  719 (1106)
Q Consensus       640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~  719 (1106)
                       .. .    +                                                              .+.--.+.
T Consensus       417 -K~-~----~--------------------------------------------------------------~g~f~n~e  428 (698)
T KOG2314|consen  417 -KS-K----V--------------------------------------------------------------KGQFSNLE  428 (698)
T ss_pred             -cc-c----c--------------------------------------------------------------cceEeeEE
Confidence             00 0    0                                                              00001334


Q ss_pred             eEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecC---ceEEEeeccccccCCCCccccccCccccCCCC
Q 001295          720 VWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN---AIHLLWKWQRTERNSSGKATASVAPQLWQPPS  796 (1106)
Q Consensus       720 vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~  796 (1106)
                      |+.+.....+.....       -...|...+|-|.|+.+++.+.+   .++.+|.+....                  ..
T Consensus       429 IfrireKdIpve~ve-------lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~------------------~~  483 (698)
T KOG2314|consen  429 IFRIREKDIPVEVVE-------LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNI------------------KK  483 (698)
T ss_pred             EEEeeccCCCceeee-------cchheeeeeeccCCCeEEEEEccccccceeEEEeecCC------------------Cc
Confidence            444443222221111       34678899999999988777664   566666554210                  01


Q ss_pred             CCccccccCCCCCCCCeeEEEEecCCCEEEEEe----CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeC
Q 001295          797 GIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS----GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD  872 (1106)
Q Consensus       797 ~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s----dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~  872 (1106)
                      -.++.. +    .....+.+.|+|.|++++.+.    .|.+.++|+.-..+..+-.......+.+.|.| .|+|+++++.
T Consensus       484 ~~lVk~-~----dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDP-tGRYvvT~ss  557 (698)
T KOG2314|consen  484 PSLVKE-L----DKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDP-TGRYVVTSSS  557 (698)
T ss_pred             hhhhhh-h----cccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECC-CCCEEEEeee
Confidence            111111 1    335567899999999999885    58899999885333333333334578899999 9999999876


Q ss_pred             CC
Q 001295          873 DS  874 (1106)
Q Consensus       873 dg  874 (1106)
                      -.
T Consensus       558 ~w  559 (698)
T KOG2314|consen  558 SW  559 (698)
T ss_pred             hh
Confidence            54

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.30  E-value=3.6e-12  Score=140.37  Aligned_cols=213  Identities=16%  Similarity=0.179  Sum_probs=146.7

Q ss_pred             CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEE
Q 001295          349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  428 (1106)
Q Consensus       349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  428 (1106)
                      |+..-+|++||-+.++ |+.|+..|.|+++++.+|.....                   ..+|..+|+-+.=|.||..++
T Consensus      1100 ~~~~fTc~afs~~~~h-L~vG~~~Geik~~nv~sG~~e~s-------------------~ncH~SavT~vePs~dgs~~L 1159 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNH-LAVGSHAGEIKIFNVSSGSMEES-------------------VNCHQSAVTLVEPSVDGSTQL 1159 (1516)
T ss_pred             cccceeeEEeecCCce-EEeeeccceEEEEEccCcccccc-------------------ccccccccccccccCCcceee
Confidence            7788999999999996 99999999999999999977653                   689999999999999999888


Q ss_pred             EEeCCC--eEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEE-Eec---cCC
Q 001295          429 VAYSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI-FEG---HEA  502 (1106)
Q Consensus       429 s~~~d~--~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~---h~~  502 (1106)
                      +.+.-.  ...+|++.+-  ....+++.    .-.++.|+.....  -+.|.....+.|||++++..+.+ +.+   ...
T Consensus      1160 tsss~S~PlsaLW~~~s~--~~~~Hsf~----ed~~vkFsn~~q~--r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y 1231 (1516)
T KOG1832|consen 1160 TSSSSSSPLSALWDASST--GGPRHSFD----EDKAVKFSNSLQF--RALGTEADDALLYDVQTCSPLQTYLTDTVTSSY 1231 (1516)
T ss_pred             eeccccCchHHHhccccc--cCcccccc----ccceeehhhhHHH--HHhcccccceEEEecccCcHHHHhcCcchhhhh
Confidence            765433  4789998752  22222333    3467889877553  23344445688999999988776 332   112


Q ss_pred             CeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEE
Q 001295          503 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  582 (1106)
Q Consensus       503 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~  582 (1106)
                      .-++..|+|..  .+++-   ||  .+||.+..+.+..+.....       .-               .-.|+|.|+.++
T Consensus      1232 ~~n~a~FsP~D--~LIln---dG--vLWDvR~~~aIh~FD~ft~-------~~---------------~G~FHP~g~eVI 1282 (1516)
T KOG1832|consen 1232 SNNLAHFSPCD--TLILN---DG--VLWDVRIPEAIHRFDQFTD-------YG---------------GGGFHPSGNEVI 1282 (1516)
T ss_pred             hccccccCCCc--ceEee---Cc--eeeeeccHHHHhhhhhhee-------cc---------------cccccCCCceEE
Confidence            22455665543  34443   44  6899987766554432211       00               113677777788


Q ss_pred             EEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEE
Q 001295          583 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAV  627 (1106)
Q Consensus       583 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~  627 (1106)
                      .-++     |||+++.+.++....-.    -..+.|+..|..+..
T Consensus      1283 INSE-----IwD~RTF~lLh~VP~Ld----qc~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1283 INSE-----IWDMRTFKLLHSVPSLD----QCAVTFNSTGDVMYA 1318 (1516)
T ss_pred             eech-----hhhhHHHHHHhcCcccc----ceEEEeccCccchhh
Confidence            7664     89999998887775432    246888888876654

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.30  E-value=2.7e-09  Score=111.79  Aligned_cols=337  Identities=12%  Similarity=0.141  Sum_probs=206.5

Q ss_pred             EEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCC---------------cEE
Q 001295          571 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN---------------GIK  635 (1106)
Q Consensus       571 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg---------------~i~  635 (1106)
                      .++++|.|.+|++... ..|.+|.-..+..+..+..    ..|..+.|+|.++||.+=+..+               .+.
T Consensus        37 ~~~~SP~G~~l~~~~~-~~V~~~~g~~~~~l~~~~~----~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~  111 (561)
T COG5354          37 YVSESPLGTYLFSEHA-AGVECWGGPSKAKLVRFRH----PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVF  111 (561)
T ss_pred             heeecCcchheehhhc-cceEEccccchhheeeeec----CCceecccCcccceeeeeccCCccChhhccCCccccCcee
Confidence            3444444445655444 4588998877766666542    3588999999999999875543               489


Q ss_pred             EEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCC-CccccCCCCccccccC
Q 001295          636 ILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNG-DVRSLADVKPRITEES  714 (1106)
Q Consensus       636 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~  714 (1106)
                      +||+.++ .++..+........                                       .+ ...++.+..+.+-. .
T Consensus       112 vwd~~sg-~iv~sf~~~~q~~~---------------------------------------~Wp~~k~s~~D~y~ARv-v  150 (561)
T COG5354         112 VWDIASG-MIVFSFNGISQPYL---------------------------------------GWPVLKFSIDDKYVARV-V  150 (561)
T ss_pred             EEeccCc-eeEeeccccCCccc---------------------------------------ccceeeeeecchhhhhh-c
Confidence            9999988 55555544332200                                       11 12222333333332 3


Q ss_pred             CCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCc--eEEE-----eecCceEEEeeccccccCCCCcccccc
Q 001295          715 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGN--AILA-----LASNAIHLLWKWQRTERNSSGKATASV  787 (1106)
Q Consensus       715 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~--~l~~-----~~~dg~i~iw~~~~~~~~~~~~~~~~~  787 (1106)
                      ...+.++++...-.......+      ....|....++|.++  .|+.     .+..+.+++|.+.              
T Consensus       151 ~~sl~i~e~t~n~~~~p~~~l------r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp--------------  210 (561)
T COG5354         151 GSSLYIHEITDNIEEHPFKNL------RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIP--------------  210 (561)
T ss_pred             cCeEEEEecCCccccCchhhc------cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEcc--------------
Confidence            357888886433233333322      246788889998753  2222     1234556666554              


Q ss_pred             CccccCCCCCCccc-cccCCCCCCCCeeEEEEecCCCEEEEEe------------CCeEEEEEcCCCceeeeecCCCCCe
Q 001295          788 APQLWQPPSGIMMT-NDVTDSNPEEAVPCFALSKNDSYVMSAS------------GGKISLFNMMTFKTMATFMPPPPAA  854 (1106)
Q Consensus       788 ~~~~w~~~~~~~~~-~~~~~~~~~~~v~~l~~s~~~~~l~~~s------------dg~i~vwd~~~~~~~~~~~~~~~~v  854 (1106)
                              .+..+. ..+    ....-..+.|.+.|++|++--            ...+.|+++....+.-.. ...++|
T Consensus       211 --------~~s~l~tk~l----fk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pV  277 (561)
T COG5354         211 --------KNSVLVTKNL----FKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPV  277 (561)
T ss_pred             --------CCCeeeeeee----EeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccc
Confidence                    222111 000    111223567777887766331            245889998854443333 557899


Q ss_pred             eEEEEecCCCceEE--EeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCC---CcEEEEeCCCcccc
Q 001295          855 TFLAFHPQDNNIIA--IGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD---SQLCVWSSDGWEKQ  929 (1106)
Q Consensus       855 ~~l~~s~~d~~~la--~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D---g~i~vwd~~~~~~~  929 (1106)
                      ...+|.| .++.++  +|-.+..+.++|+... +...  .....=+.+.|||.+++++.++-|   |.+.+||...... 
T Consensus       278 hdf~W~p-~S~~F~vi~g~~pa~~s~~~lr~N-l~~~--~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~-  352 (561)
T COG5354         278 HDFTWEP-LSSRFAVISGYMPASVSVFDLRGN-LRFY--FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFK-  352 (561)
T ss_pred             eeeeecc-cCCceeEEecccccceeecccccc-eEEe--cCCcccccccccCcccEEEEecCCccccceEEeccCCceE-
Confidence            9999999 544443  3457889999998865 3333  344455678899999999998877   6799999877322 


Q ss_pred             cceeecccCCCCCCCCCCceEEEcCCCcEEEEE-------eCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEE
Q 001295          930 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-------HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLV 1002 (1106)
Q Consensus       930 ~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-------~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l 1002 (1106)
                         +.....+.     .-.-+.|+|||.++.+.       .|..+.|||+.....          ...+.+.|.|.|++.
T Consensus       353 ---~~~~~~~~-----n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~----------fel~~~~W~p~~~~~  414 (561)
T COG5354         353 ---VAGAFNGL-----NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV----------FELTNITWDPSGQYV  414 (561)
T ss_pred             ---EEEEeecC-----CceEeeccCCceEEEecCCCcccccCcceEEEEecCchh----------hhhhhccccCCcccc
Confidence               22222222     33567899999999873       256899999864432          156778899989888


Q ss_pred             EEEEcCC
Q 001295         1003 YACFLDA 1009 (1106)
Q Consensus      1003 ~t~s~Dg 1009 (1106)
                      .+.+.+.
T Consensus       415 ttsSs~~  421 (561)
T COG5354         415 TTSSSCP  421 (561)
T ss_pred             eeeccCC
Confidence            7777665

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.29  E-value=1.2e-09  Score=125.64  Aligned_cols=205  Identities=14%  Similarity=0.120  Sum_probs=138.8

Q ss_pred             CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCC---CcEEEEEeecceEEEEecCcccCeeEEEEecCCC
Q 001295          831 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD---SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN  907 (1106)
Q Consensus       831 g~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~d---g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~  907 (1106)
                      ..|.++|..... .+.+..+...+...+|+| |+++||.+..+   ..|++||+.+++.. .+..+...+.+++|+|||+
T Consensus       170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~-~~~~~~~~~~~~~~spDg~  246 (417)
T TIGR02800       170 YELQVADYDGAN-PQTITRSREPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQRE-KVASFPGMNGAPAFSPDGS  246 (417)
T ss_pred             ceEEEEcCCCCC-CEEeecCCCceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCC
Confidence            358888876443 445555666788999999 88888877644   47999999887643 3344556677899999998


Q ss_pred             EEEE-EcCCC--cEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeC----CeEEEEecCCceEeee
Q 001295          908 VLVS-SGADS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE----TQLAIFETTKLECVKQ  980 (1106)
Q Consensus       908 ~l~s-~s~Dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d----~~v~i~d~~~~~~~~~  980 (1106)
                      .|+. .+.++  .|.+|++.++....   +  . .+.   .......|+|||++|+...+    ..|.++|+.+++....
T Consensus       247 ~l~~~~~~~~~~~i~~~d~~~~~~~~---l--~-~~~---~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l  317 (417)
T TIGR02800       247 KLAVSLSKDGNPDIYVMDLDGKQLTR---L--T-NGP---GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRL  317 (417)
T ss_pred             EEEEEECCCCCccEEEEECCCCCEEE---C--C-CCC---CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence            7764 44444  58888988754211   1  1 111   13356789999999887422    2688889887765433


Q ss_pred             cccCCCCCCeeEEEECCCCCEEEEEEcCC---eEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEE
Q 001295          981 WVPRESSAPITHATFSCDSQLVYACFLDA---TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1057 (1106)
Q Consensus       981 ~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t 1057 (1106)
                      .   .+...+..+.|+|||++|+.++.++   .|.+||+.++.... +.      ..  .. ..  ...|+| |++.|+.
T Consensus       318 ~---~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~------~~--~~-~~--~p~~sp-dg~~l~~  381 (417)
T TIGR02800       318 T---FRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LT------DT--GL-DE--SPSFAP-NGRMILY  381 (417)
T ss_pred             e---cCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-cc------CC--CC-CC--CceECC-CCCEEEE
Confidence            2   2345677889999999999888776   79999998865432 22      11  01 11  357899 6787777


Q ss_pred             EeCCCc
Q 001295         1058 GLSDGG 1063 (1106)
Q Consensus      1058 ~~~Dg~ 1063 (1106)
                      .+.++.
T Consensus       382 ~~~~~~  387 (417)
T TIGR02800       382 ATTRGG  387 (417)
T ss_pred             EEeCCC
Confidence            666653

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.29  E-value=2e-10  Score=113.74  Aligned_cols=111  Identities=20%  Similarity=0.335  Sum_probs=90.5

Q ss_pred             CCCCeeEEEEecCCCEEEEEe---CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeC---CCcEEEEEee
Q 001295          809 PEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD---DSSIQIYNVR  882 (1106)
Q Consensus       809 ~~~~v~~l~~s~~~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~---dg~v~iwd~~  882 (1106)
                      ...+|.+++|+|+|+.+++..   +..|.+||++ ++.+..+.  ...+..+.||| +|++|++|+.   .|.|.+||+.
T Consensus        58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~  133 (194)
T PF08662_consen   58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVR  133 (194)
T ss_pred             CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECC
Confidence            345699999999999876653   5789999997 56666664  46788999999 8999998864   4679999999


Q ss_pred             cceEEEEecCcccCeeEEEEecCCCEEEEEcC------CCcEEEEeCCC
Q 001295          883 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGA------DSQLCVWSSDG  925 (1106)
Q Consensus       883 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~------Dg~i~vwd~~~  925 (1106)
                      +.+.+.... |. .++.++|+|||++|++++.      |..++||++..
T Consensus       134 ~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  134 KKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             CCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence            988887765 33 3789999999999998864      78899999865

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.28  E-value=8.6e-09  Score=109.70  Aligned_cols=238  Identities=10%  Similarity=0.076  Sum_probs=149.3

Q ss_pred             EecCCCEEEEEeC-----------CeEEEEEcCCCceeeeecCCCC-------CeeEEEEecCCCceEEEee-C-CCcEE
Q 001295          818 LSKNDSYVMSASG-----------GKISLFNMMTFKTMATFMPPPP-------AATFLAFHPQDNNIIAIGM-D-DSSIQ  877 (1106)
Q Consensus       818 ~s~~~~~l~~~sd-----------g~i~vwd~~~~~~~~~~~~~~~-------~v~~l~~s~~d~~~la~g~-~-dg~v~  877 (1106)
                      +|||++.|.++.-           +.|.+||..+.+.+..+.....       ....++++| ||++|++.. . +..|.
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~  131 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAVG  131 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC-CCCEEEEecCCCCCEEE
Confidence            9999998876643           6799999999999988764322       234789999 888888765 4 68999


Q ss_pred             EEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcC-CC
Q 001295          878 IYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ-DQ  956 (1106)
Q Consensus       878 iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-dg  956 (1106)
                      ++|+.+++.+.++.--.+ ..-...+.+..++  -+.||......++...........++.+... . -...-.|++ ||
T Consensus       132 VvD~~~~kvv~ei~vp~~-~~vy~t~e~~~~~--~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~-~-v~~rP~~~~~dg  206 (352)
T TIGR02658       132 VVDLEGKAFVRMMDVPDC-YHIFPTANDTFFM--HCRDGSLAKVGYGTKGNPKIKPTEVFHPEDE-Y-LINHPAYSNKSG  206 (352)
T ss_pred             EEECCCCcEEEEEeCCCC-cEEEEecCCccEE--EeecCceEEEEecCCCceEEeeeeeecCCcc-c-cccCCceEcCCC
Confidence            999999999888764221 1112222222111  1234443333332211111111111111000 0 000114566 99


Q ss_pred             cEEEEEeCCeEEEEecCC-----ceEeeecccCC-----CCCCeeEEEECCCCCEEEEEEc----------CCeEEEEEc
Q 001295          957 IHFLVVHETQLAIFETTK-----LECVKQWVPRE-----SSAPITHATFSCDSQLVYACFL----------DATVCVFSA 1016 (1106)
Q Consensus       957 ~~l~~~~d~~v~i~d~~~-----~~~~~~~~~~~-----h~~~v~~l~~s~d~~~l~t~s~----------Dg~i~vwd~ 1016 (1106)
                      +++.++.+|.|.+.|+..     ...+..+....     ....+.-+++++|++.|+....          .+.|.++|.
T Consensus       207 ~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~  286 (352)
T TIGR02658       207 RLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA  286 (352)
T ss_pred             cEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC
Confidence            999998889999999543     33322221110     1233445999999999887542          247999999


Q ss_pred             CCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCC-EEEEEe-CCCcEEEEeecCCC
Q 001295         1017 ANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGL-SDGGVHVFEPLESE 1073 (1106)
Q Consensus      1017 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~-~l~t~~-~Dg~v~vW~~~~~~ 1073 (1106)
                      .+++.+.++.    ....     .+  .++++| |++ +|++.. .++.|.+.|+.+++
T Consensus       287 ~t~kvi~~i~----vG~~-----~~--~iavS~-Dgkp~lyvtn~~s~~VsViD~~t~k  333 (352)
T TIGR02658       287 KTGKRLRKIE----LGHE-----ID--SINVSQ-DAKPLLYALSTGDKTLYIFDAETGK  333 (352)
T ss_pred             CCCeEEEEEe----CCCc-----ee--eEEECC-CCCeEEEEeCCCCCcEEEEECcCCe
Confidence            9999999887    2211     33  799999 677 777655 68899999999987

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.25  E-value=2.7e-10  Score=113.09  Aligned_cols=204  Identities=13%  Similarity=0.139  Sum_probs=137.3

Q ss_pred             ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEc-cCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEE
Q 001295          407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSY-HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV  485 (1106)
Q Consensus       407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~-~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~i  485 (1106)
                      .+.||.+.|++...-|-..-+++.+.|.+++||-- +.++....+  ...-..+++++.+.++..  .|+.|-..|++.-
T Consensus        19 ~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI--~~~mP~~~~~~~y~~e~~--~L~vg~~ngtvte   94 (404)
T KOG1409|consen   19 KIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSI--YHYMPSPCSAMEYVSESR--RLYVGQDNGTVTE   94 (404)
T ss_pred             hhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchh--hhhCCCCceEeeeeccce--EEEEEEecceEEE
Confidence            46899999999999998888999999999999954 444433221  122356789999999888  7888989999988


Q ss_pred             EeCC----CCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEE
Q 001295          486 WDAT----NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY  561 (1106)
Q Consensus       486 wd~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~  561 (1106)
                      +.+.    .-..++....|...|..+.|+...  .++++.+.|..+.---.+.+..+-.+.....     +  .+-    
T Consensus        95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~--e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~-----~--t~~----  161 (404)
T KOG1409|consen   95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTH--EWVLSTGKDKQFAWHCTESGNRLGGYNFETP-----A--SAL----  161 (404)
T ss_pred             EEhhhhhhhcchhhhhhhhhcceeeEEecCCc--eeEEEeccccceEEEeeccCCcccceEeecc-----C--CCC----
Confidence            8654    344556677899999999986555  6899999988765333333222211110000     0  000    


Q ss_pred             EeeeccceeEEEEcCCCCEEEEEECCCeEEEEEC--CCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEc
Q 001295          562 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM--DSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT  639 (1106)
Q Consensus       562 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~--~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~  639 (1106)
                                 .+.-.  +...|...|.|.+-.+  ..-.++.++.++  ...+.+++|.+....|.+|..|..+.+||+
T Consensus       162 -----------~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h--~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdi  226 (404)
T KOG1409|consen  162 -----------QFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGH--TGEVTCLKWDPGQRLLFSGASDHSVIMWDI  226 (404)
T ss_pred             -----------ceeeE--EEEecccccceEEEEEeecCCceEEEEcCc--ccceEEEEEcCCCcEEEeccccCceEEEec
Confidence                       00000  2333444455544433  234456666655  668999999999999999999999999998


Q ss_pred             cCC
Q 001295          640 SDG  642 (1106)
Q Consensus       640 ~~~  642 (1106)
                      ...
T Consensus       227 gg~  229 (404)
T KOG1409|consen  227 GGR  229 (404)
T ss_pred             cCC
Confidence            655

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.24  E-value=5.1e-09  Score=110.61  Aligned_cols=294  Identities=12%  Similarity=0.152  Sum_probs=183.2

Q ss_pred             cceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCC
Q 001295          744 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS  823 (1106)
Q Consensus       744 ~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~  823 (1106)
                      ..|.-+.|||+.++|++-+..-.+.-|+-.           ....+.+||+.+|........-......-.-+.||.|++
T Consensus       250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~-----------e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdK  318 (698)
T KOG2314|consen  250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDN-----------EGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDK  318 (698)
T ss_pred             CCceeeecCCccceEEEecCCccccCcccC-----------CCceEEEEEccccchhcceeccCCCccccceEEeccCCc
Confidence            346778888988888877654322222100           011245666667765543222100112223468999999


Q ss_pred             EEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCC-----CcEEEEEeecceEEEEecCcccCee
Q 001295          824 YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD-----SSIQIYNVRVDEVKSKLKGHSKRIT  898 (1106)
Q Consensus       824 ~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~d-----g~v~iwd~~~~~~~~~l~~h~~~V~  898 (1106)
                      ++|--....|.||+..+..++..-.-....|....||| .+.+||.=...     ..+.+-.+.+++.+++-.-|.-.=.
T Consensus       319 y~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDc  397 (698)
T KOG2314|consen  319 YFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDC  397 (698)
T ss_pred             eeEEeccceEEEEecCceeeecccccCCccccCcccCC-CcceEEEEcccccCCcceEEEEecCccceeeeccceeeecc
Confidence            99988888999999887655543333455688999999 78888864422     3577777788877776665554444


Q ss_pred             EEEEecCCCEEEEEc----------CCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE--Ee--C
Q 001295          899 GLAFSHALNVLVSSG----------ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VH--E  964 (1106)
Q Consensus       899 ~l~~s~d~~~l~s~s----------~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~--~~--d  964 (1106)
                      .|-|-.+|.+|+.--          .-..+.|+.+...+..    +..    ......+...+|-|.|..+++  +.  .
T Consensus       398 kLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIp----ve~----velke~vi~FaWEP~gdkF~vi~g~~~k  469 (698)
T KOG2314|consen  398 KLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIP----VEV----VELKESVIAFAWEPHGDKFAVISGNTVK  469 (698)
T ss_pred             EEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCC----cee----eecchheeeeeeccCCCeEEEEEccccc
Confidence            577888888887532          1123455555542211    111    111246788999999999888  32  3


Q ss_pred             CeEEEEecCC-c---eEeeecccCCCCCCeeEEEECCCCCEEEEEE---cCCeEEEEEcCCceeEEeeCCCcccCCCCCC
Q 001295          965 TQLAIFETTK-L---ECVKQWVPRESSAPITHATFSCDSQLVYACF---LDATVCVFSAANLKLRCRINPSAYLPAGVSS 1037 (1106)
Q Consensus       965 ~~v~i~d~~~-~---~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s---~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 1037 (1106)
                      .++.+|.+++ .   +.+..+.    ....+.+.|+|.|++++.+.   ..|.+.++|..-..+...-.+.++..     
T Consensus       470 ~tvsfY~~e~~~~~~~lVk~~d----k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~a-----  540 (698)
T KOG2314|consen  470 NTVSFYAVETNIKKPSLVKELD----KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAA-----  540 (698)
T ss_pred             cceeEEEeecCCCchhhhhhhc----ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcccccc-----
Confidence            5688898873 2   2233332    45668899999999987664   46889999987533332222222222     


Q ss_pred             CCccceEEEEeCCCCCEEEEEeCCC------cEEEEeecCC
Q 001295         1038 SNVHPLVIAAHPQEPNEFALGLSDG------GVHVFEPLES 1072 (1106)
Q Consensus      1038 ~~v~~~~~~~~~~d~~~l~t~~~Dg------~v~vW~~~~~ 1072 (1106)
                           ..+-|.| .|++++|+++-.      --++|++...
T Consensus       541 -----t~veWDP-tGRYvvT~ss~wrhk~d~GYri~tfqGr  575 (698)
T KOG2314|consen  541 -----TEVEWDP-TGRYVVTSSSSWRHKVDNGYRIFTFQGR  575 (698)
T ss_pred             -----ccceECC-CCCEEEEeeehhhhccccceEEEEeecH
Confidence                 1588999 599999988643      4567776543

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.23  E-value=1.6e-09  Score=122.22  Aligned_cols=224  Identities=10%  Similarity=0.074  Sum_probs=131.7

Q ss_pred             cCCCCcEEEEEecCCCeE--EEEEeccC--cEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccC
Q 001295          348 NQGSSPMSMDFHPVQQTL--LLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  423 (1106)
Q Consensus       348 ~h~~~v~~~~~sp~g~~l--latg~~dg--~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd  423 (1106)
                      .....+..-+|||||+.+  +++...+|  .|.+.++.+++...                    +....+.....+||||
T Consensus       182 ~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--------------------lt~~~g~~~~p~wSPD  241 (428)
T PRK01029        182 QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--------------------ILALQGNQLMPTFSPR  241 (428)
T ss_pred             cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--------------------eecCCCCccceEECCC
Confidence            355567788999999862  33444444  57788888776543                    2223344567899999


Q ss_pred             CCEEEEEeC-----CCeEEEEEccCCc--eeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEE--eCCC-Cce
Q 001295          424 GSLFGVAYS-----RHIVQIYSYHGGD--EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW--DATN-GAK  493 (1106)
Q Consensus       424 g~~las~~~-----d~~v~iwd~~~~~--~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw--d~~~-~~~  493 (1106)
                      |++||..+.     +-.+.+|++.++.  ...++  ..++.+.....+|+|||+. ++++...++...||  ++.. +..
T Consensus       242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~l--t~~~~~~~~~p~wSPDG~~-Laf~s~~~g~~~ly~~~~~~~g~~  318 (428)
T PRK01029        242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRL--LNEAFGTQGNPSFSPDGTR-LVFVSNKDGRPRIYIMQIDPEGQS  318 (428)
T ss_pred             CCEEEEEECCCCCcceeEEEeecccCCCCcceEe--ecCCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEECcccccc
Confidence            999987653     2234557776532  12221  2223344577899999995 23334456655555  4432 333


Q ss_pred             eEEEeccCCCeEEEeccccCCceEEEEEecC---CeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeecccee
Q 001295          494 QYIFEGHEAPVYSVCPHHKENIQFIFSTALD---GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG  570 (1106)
Q Consensus       494 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~  570 (1106)
                      ...+..+...+....|+++  |+.|+..+.+   ..|.+||+.+++... +......+....|+|||+            
T Consensus       319 ~~~lt~~~~~~~~p~wSPD--G~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~------------  383 (428)
T PRK01029        319 PRLLTKKYRNSSCPAWSPD--GKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSL------------  383 (428)
T ss_pred             eEEeccCCCCccceeECCC--CCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCC------------
Confidence            4555555556667777655  4666655443   468899988765432 222222344455555554            


Q ss_pred             EEEEcCCCCEEEEEE---CCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccC
Q 001295          571 VVQFDTTKNRFLAAG---DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD  621 (1106)
Q Consensus       571 ~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~  621 (1106)
                               .|+...   ....|++||+.+++........   ..+...+|+|-
T Consensus       384 ---------~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~---g~~~~p~Ws~~  425 (428)
T PRK01029        384 ---------HLVYSAGNSNESELYLISLITKKTRKIVIGS---GEKRFPSWGAF  425 (428)
T ss_pred             ---------EEEEEECCCCCceEEEEECCCCCEEEeecCC---CcccCceecCC
Confidence                     454332   3467999999887765554332   23566788774

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.22  E-value=4.2e-09  Score=121.09  Aligned_cols=191  Identities=14%  Similarity=0.113  Sum_probs=123.4

Q ss_pred             cCCCCcCeEEEEEccCCCEEEEEeCC---CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCC--c
Q 001295          408 VKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--T  482 (1106)
Q Consensus       408 ~~~h~~~V~~l~~spdg~~las~~~d---~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~--~  482 (1106)
                      +..+...+...+|||||++||.++.+   ..|++||+.+++...    +..+.+.+.+++|+|||+. ++++.+.++  .
T Consensus       185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~----~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~  259 (417)
T TIGR02800       185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK----VASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD  259 (417)
T ss_pred             eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence            34566678999999999999987644   479999999876432    3345566778999999985 344555444  5


Q ss_pred             EEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEec-CC--eEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCe
Q 001295          483 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DG--KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR  559 (1106)
Q Consensus       483 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~  559 (1106)
                      |++||+.++.. ..+..+........|++  +++.|+..+. ++  .|.++|+.+... ..+........          
T Consensus       260 i~~~d~~~~~~-~~l~~~~~~~~~~~~s~--dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~----------  325 (417)
T TIGR02800       260 IYVMDLDGKQL-TRLTNGPGIDTEPSWSP--DGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNA----------  325 (417)
T ss_pred             EEEEECCCCCE-EECCCCCCCCCCEEECC--CCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCcc----------
Confidence            89999887764 34444544445566654  5566665543 33  566777664332 22222222222          


Q ss_pred             EEEeeeccceeEEEEcCCCCEEEEEECCC---eEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCC
Q 001295          560 TYQGFRKRSLGVVQFDTTKNRFLAAGDDF---SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN  632 (1106)
Q Consensus       560 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg  632 (1106)
                                 ...|+|++++++.++.++   .|.+||+.++... .+....   ......|+|||++|+..+.++
T Consensus       326 -----------~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~---~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       326 -----------SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDTG---LDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             -----------CeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCCC---CCCCceECCCCCEEEEEEeCC
Confidence                       345566666777776665   8999999876543 332221   245578999999998887754

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.21  E-value=2e-09  Score=122.69  Aligned_cols=222  Identities=10%  Similarity=0.026  Sum_probs=129.2

Q ss_pred             eeccCCCCcEEEEEecCCCeEEEEEeccC--cEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc
Q 001295          345 RTLNQGSSPMSMDFHPVQQTLLLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  422 (1106)
Q Consensus       345 ~~~~h~~~v~~~~~sp~g~~llatg~~dg--~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp  422 (1106)
                      ....+...+.+.+|||||++|+.+...++  .|.+||+.+++....                    ....+.....+|||
T Consensus       212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l--------------------t~~~g~~~~~~wSP  271 (448)
T PRK04792        212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV--------------------TSFPGINGAPRFSP  271 (448)
T ss_pred             EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe--------------------cCCCCCcCCeeECC
Confidence            44456778999999999998555544443  588889988765321                    11122344689999


Q ss_pred             CCCEEEEE-eCCCe--EEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCC--cEEEEeCCCCceeEEE
Q 001295          423 DGSLFGVA-YSRHI--VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAKQYIF  497 (1106)
Q Consensus       423 dg~~las~-~~d~~--v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~  497 (1106)
                      ||+.|+.. +.++.  |.+||+.+++..    .+..+.......+|+|||+. ++++...++  .|.++|+.+++... +
T Consensus       272 DG~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~dl~~g~~~~-L  345 (448)
T PRK04792        272 DGKKLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRVNLASGKVSR-L  345 (448)
T ss_pred             CCCEEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCCEEE-E
Confidence            99988764 55564  778888887643    24455566788999999995 333443344  56677887776433 3


Q ss_pred             eccCCCeEEEeccccCCceEEEEEec-CCe--EEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEE
Q 001295          498 EGHEAPVYSVCPHHKENIQFIFSTAL-DGK--IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF  574 (1106)
Q Consensus       498 ~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~  574 (1106)
                      ..+.......+|++  +|++|+..+. ++.  |.++|+.++... .+... .......                     |
T Consensus       346 t~~g~~~~~~~~Sp--DG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps---------------------~  400 (448)
T PRK04792        346 TFEGEQNLGGSITP--DGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPS---------------------V  400 (448)
T ss_pred             ecCCCCCcCeeECC--CCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCce---------------------E
Confidence            22222233456654  4456655544 444  444566554322 11111 1111223                     4


Q ss_pred             cCCCCEEEEEE-CCC--eEEEEECCCcceeEEEccCCCCCCcCeEEEcc
Q 001295          575 DTTKNRFLAAG-DDF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNK  620 (1106)
Q Consensus       575 ~~~~~~l~~~~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  620 (1106)
                      +|+|+.++..+ .++  .+++++. +|.....+....  ..+...+|+|
T Consensus       401 spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~--g~~~~p~Wsp  446 (448)
T PRK04792        401 APNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQ--GEVKSPAWSP  446 (448)
T ss_pred             CCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCC--CCcCCCccCC
Confidence            55555555543 233  4777787 555556565432  2466777876

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.20  E-value=3.2e-09  Score=121.94  Aligned_cols=225  Identities=10%  Similarity=0.056  Sum_probs=133.3

Q ss_pred             ceeeeccCCCCcEEEEEecCCCeEEEEEecc--CcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEE
Q 001295          342 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI  419 (1106)
Q Consensus       342 ~~~~~~~h~~~v~~~~~sp~g~~llatg~~d--g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~  419 (1106)
                      +...+..+...+...+|||||++|+++...+  ..|.+||+.+++...                    +....+.+...+
T Consensus       190 ~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~~~g~~~~~~  249 (430)
T PRK00178        190 RAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITNFEGLNGAPA  249 (430)
T ss_pred             CceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccCCCCCcCCeE
Confidence            3444556788899999999999855554333  368999998876543                    222233455789


Q ss_pred             EccCCCEEEEE-eCCC--eEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCC--CcEEEEeCCCCcee
Q 001295          420 WSPDGSLFGVA-YSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD--KTIKVWDATNGAKQ  494 (1106)
Q Consensus       420 ~spdg~~las~-~~d~--~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d--~~i~iwd~~~~~~~  494 (1106)
                      |||||++|+.. +.++  .|.+||+.+++..+    +..+........|+|||+. ++++...+  ..|+++|+.+++..
T Consensus       250 ~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~----lt~~~~~~~~~~~spDg~~-i~f~s~~~g~~~iy~~d~~~g~~~  324 (430)
T PRK00178        250 WSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR----VTNHPAIDTEPFWGKDGRT-LYFTSDRGGKPQIYKVNVNGGRAE  324 (430)
T ss_pred             ECCCCCEEEEEEccCCCceEEEEECCCCCeEE----cccCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEECCCCCEE
Confidence            99999998854 4444  68888999876432    4456666778899999995 33333333  35778888877743


Q ss_pred             EEEeccCCCeEEEeccccCCceEEEEEec-CC--eEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeE
Q 001295          495 YIFEGHEAPVYSVCPHHKENIQFIFSTAL-DG--KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV  571 (1106)
Q Consensus       495 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~  571 (1106)
                      . +...........|++  +|+.++..+. ++  .|.+||+.++.... +.. ........                   
T Consensus       325 ~-lt~~~~~~~~~~~Sp--dg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~-------------------  380 (430)
T PRK00178        325 R-VTFVGNYNARPRLSA--DGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD-TSLDESPS-------------------  380 (430)
T ss_pred             E-eecCCCCccceEECC--CCCEEEEEEccCCceEEEEEECCCCCEEE-ccC-CCCCCCce-------------------
Confidence            3 221122223345554  4456665554 33  57788887654322 111 11111234                   


Q ss_pred             EEEcCCCCEEEEEECC---CeEEEEECCCcceeEEEccCCCCCCcCeEEEcc
Q 001295          572 VQFDTTKNRFLAAGDD---FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK  620 (1106)
Q Consensus       572 ~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  620 (1106)
                        |+|+|+.++..+.+   ..|+++++.. .....+...  ...+...+|+|
T Consensus       381 --~spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~~~--~g~~~~p~ws~  427 (430)
T PRK00178        381 --VAPNGTMLIYATRQQGRGVLMLVSING-RVRLPLPTA--QGEVREPSWSP  427 (430)
T ss_pred             --ECCCCCEEEEEEecCCceEEEEEECCC-CceEECcCC--CCCcCCCccCC
Confidence              44555556554432   4577777743 333344332  22456667776

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.18  E-value=4.1e-09  Score=113.12  Aligned_cols=188  Identities=16%  Similarity=0.293  Sum_probs=147.3

Q ss_pred             cCCCEEEEEe-CCeEEEEEcCCCceeeeecCC---CCCeeEEEEe------c-------------CCCceEEEeeCCCcE
Q 001295          820 KNDSYVMSAS-GGKISLFNMMTFKTMATFMPP---PPAATFLAFH------P-------------QDNNIIAIGMDDSSI  876 (1106)
Q Consensus       820 ~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~---~~~v~~l~~s------~-------------~d~~~la~g~~dg~v  876 (1106)
                      |-..++|... ||.+++|+...++....+...   .+..++..|.      |             .|-..++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            3456777776 899999999998887776532   2333443332      1             133478889999999


Q ss_pred             EEEEeecceEEEEec--CcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcC
Q 001295          877 QIYNVRVDEVKSKLK--GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ  954 (1106)
Q Consensus       877 ~iwd~~~~~~~~~l~--~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~  954 (1106)
                      .+|++..|+....+.  .|.+.|+++.++.+-..|.|++.|+.+..|+.....     .+....+..   ..+..++.+|
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~-----~~~~~~~~~---~~~~sl~is~  154 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV-----IIRIWKEQK---PLVSSLCISP  154 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce-----eeeeeccCC---CccceEEEcC
Confidence            999999999988886  599999999999999999999999999999998844     334444433   3678999999


Q ss_pred             CCcEEEEEeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCC-----CCEEEEE-EcCCeEEEEEcCC
Q 001295          955 DQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCD-----SQLVYAC-FLDATVCVFSAAN 1018 (1106)
Q Consensus       955 dg~~l~~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d-----~~~l~t~-s~Dg~i~vwd~~~ 1018 (1106)
                      ||+.++++ .++|.+||+++++.+..|.  +|.++|.+++|..+     |.+++++ ..+.-|.+|-+..
T Consensus       155 D~~~l~~a-s~~ik~~~~~~kevv~~ft--gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  155 DGKILLTA-SRQIKVLDIETKEVVITFT--GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             CCCEEEec-cceEEEEEccCceEEEEec--CCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            99988874 3789999999999999998  99999999999877     6775544 4455678887654

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.17  E-value=1.5e-09  Score=116.42  Aligned_cols=146  Identities=15%  Similarity=0.241  Sum_probs=119.1

Q ss_pred             CCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCe
Q 001295          754 SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGK  832 (1106)
Q Consensus       754 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~  832 (1106)
                      +-..++-|...|.|.+|++..                      |.+... +....|.+.|.++.++.+-..|.+++ |+.
T Consensus        69 ~t~~lvlgt~~g~v~~ys~~~----------------------g~it~~-~st~~h~~~v~~~~~~~~~~ciyS~~ad~~  125 (541)
T KOG4547|consen   69 DTSMLVLGTPQGSVLLYSVAG----------------------GEITAK-LSTDKHYGNVNEILDAQRLGCIYSVGADLK  125 (541)
T ss_pred             CceEEEeecCCccEEEEEecC----------------------CeEEEE-EecCCCCCcceeeecccccCceEecCCcee
Confidence            444566777778888887653                      222222 22235999999999999988999888 899


Q ss_pred             EEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecC-----CC
Q 001295          833 ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA-----LN  907 (1106)
Q Consensus       833 i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d-----~~  907 (1106)
                      +..|+..++..++.+......+.+++++| |++.+++|+  ++|++||+.+++.+..|.||.++|.+++|..+     |.
T Consensus       126 v~~~~~~~~~~~~~~~~~~~~~~sl~is~-D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~  202 (541)
T KOG4547|consen  126 VVYILEKEKVIIRIWKEQKPLVSSLCISP-DGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGK  202 (541)
T ss_pred             EEEEecccceeeeeeccCCCccceEEEcC-CCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccc
Confidence            99999999999999999999999999999 899999886  68999999999999999999999999999877     55


Q ss_pred             EEE-EEcCCCcEEEEeCCC
Q 001295          908 VLV-SSGADSQLCVWSSDG  925 (1106)
Q Consensus       908 ~l~-s~s~Dg~i~vwd~~~  925 (1106)
                      ++. +...+.-+.+|-++.
T Consensus       203 ~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  203 YVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             eeeeccccccceeEEEEEc
Confidence            554 455566688887765

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.13  E-value=1.9e-08  Score=115.63  Aligned_cols=199  Identities=13%  Similarity=0.121  Sum_probs=122.9

Q ss_pred             cCCCCcCeEEEEEccCCCEEEEEeCC---CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCC--c
Q 001295          408 VKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--T  482 (1106)
Q Consensus       408 ~~~h~~~V~~l~~spdg~~las~~~d---~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~--~  482 (1106)
                      +..+...+...+|||||++|+..+.+   ..|.+||+.+++...    +....+.+...+|+|||+. ++++.+.++  .
T Consensus       194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~  268 (430)
T PRK00178        194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPE  268 (430)
T ss_pred             EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCCCE-EEEEEccCCCce
Confidence            34566789999999999999887643   469999999886432    3333345667999999995 333554444  6


Q ss_pred             EEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEe-cCC--eEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCe
Q 001295          483 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDG--KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR  559 (1106)
Q Consensus       483 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~  559 (1106)
                      |++||+.+++. ..+..+........|+++  |+.++..+ .+|  .|.++|+.+++.. .+.......           
T Consensus       269 Iy~~d~~~~~~-~~lt~~~~~~~~~~~spD--g~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~~~~~-----------  333 (430)
T PRK00178        269 IYVMDLASRQL-SRVTNHPAIDTEPFWGKD--GRTLYFTSDRGGKPQIYKVNVNGGRAE-RVTFVGNYN-----------  333 (430)
T ss_pred             EEEEECCCCCe-EEcccCCCCcCCeEECCC--CCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCc-----------
Confidence            88889988764 345555555566677554  45555444 344  4666666554322 111111111           


Q ss_pred             EEEeeeccceeEEEEcCCCCEEEEEECC---CeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCC-C--c
Q 001295          560 TYQGFRKRSLGVVQFDTTKNRFLAAGDD---FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-N--G  633 (1106)
Q Consensus       560 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-g--~  633 (1106)
                                ....|+|+|++++....+   ..|.+||+.+++.. .+... .  ......|+|||+.++..+.+ |  .
T Consensus       334 ----------~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~~-~--~~~~p~~spdg~~i~~~~~~~g~~~  399 (430)
T PRK00178        334 ----------ARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTDT-S--LDESPSVAPNGTMLIYATRQQGRGV  399 (430)
T ss_pred             ----------cceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccCC-C--CCCCceECCCCCEEEEEEecCCceE
Confidence                      123456666667665432   25889999887653 33221 1  22356899999999887654 3  3


Q ss_pred             EEEEEcc
Q 001295          634 IKILATS  640 (1106)
Q Consensus       634 i~iwd~~  640 (1106)
                      +.+++..
T Consensus       400 l~~~~~~  406 (430)
T PRK00178        400 LMLVSIN  406 (430)
T ss_pred             EEEEECC
Confidence            5566654

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.13  E-value=2.5e-08  Score=112.51  Aligned_cols=304  Identities=12%  Similarity=0.071  Sum_probs=179.4

Q ss_pred             EEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEE
Q 001295          473 CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMA  552 (1106)
Q Consensus       473 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  552 (1106)
                      .++.++.++.|..+|..+|+.+..+.-.........    -++..++.++.+|.+..+|..+++.+........ +.+..
T Consensus        67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~----v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~p  141 (377)
T TIGR03300        67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG----ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSE-VLSPP  141 (377)
T ss_pred             EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE----EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCce-eecCC
Confidence            577888889999999999998877654432222222    2235788888999999999988877665443321 11000


Q ss_pred             EecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCC---cCeEEEccCCCEEEEEe
Q 001295          553 YSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPA---SPRIRFNKDGCLLAVST  629 (1106)
Q Consensus       553 ~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---v~~v~~s~~~~~l~~~~  629 (1106)
                      .                    +  .+..++.++.++.|+.||..+|+.+..+........   ..+...  .+..++.+.
T Consensus       142 ~--------------------v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~  197 (377)
T TIGR03300       142 L--------------------V--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGF  197 (377)
T ss_pred             E--------------------E--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEEC
Confidence            0                    0  123577778899999999999998877754322100   011112  234677888


Q ss_pred             CCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCcc
Q 001295          630 NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPR  709 (1106)
Q Consensus       630 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  709 (1106)
                      .+|.+..+|..++... -.......               .+                                      
T Consensus       198 ~~g~v~ald~~tG~~~-W~~~~~~~---------------~g--------------------------------------  223 (377)
T TIGR03300       198 AGGKLVALDLQTGQPL-WEQRVALP---------------KG--------------------------------------  223 (377)
T ss_pred             CCCEEEEEEccCCCEe-eeeccccC---------------CC--------------------------------------
Confidence            8899999998887321 11000000               00                                      


Q ss_pred             ccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCc
Q 001295          710 ITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAP  789 (1106)
Q Consensus       710 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~  789 (1106)
                         .. ..-++.+.                  .    ....+  .+..+++++.+|.+..||..+++             
T Consensus       224 ---~~-~~~~~~~~------------------~----~~p~~--~~~~vy~~~~~g~l~a~d~~tG~-------------  262 (377)
T TIGR03300       224 ---RT-ELERLVDV------------------D----GDPVV--DGGQVYAVSYQGRVAALDLRSGR-------------  262 (377)
T ss_pred             ---CC-chhhhhcc------------------C----CccEE--ECCEEEEEEcCCEEEEEECCCCc-------------
Confidence               00 00000000                  0    00011  13456777778888888765322             


Q ss_pred             cccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCC-CCeeEEEEecCCCceE
Q 001295          790 QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNII  867 (1106)
Q Consensus       790 ~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~-~~v~~l~~s~~d~~~l  867 (1106)
                      .+|....+              ......  .++..+++++ +|.|..+|..+++.+....... ........   .+..|
T Consensus       263 ~~W~~~~~--------------~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i---~g~~l  323 (377)
T TIGR03300       263 VLWKRDAS--------------SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV---VGGYL  323 (377)
T ss_pred             EEEeeccC--------------CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE---ECCEE
Confidence            13433211              011122  2345555555 8999999999998776553221 22223233   24578


Q ss_pred             EEeeCCCcEEEEEeecceEEEEecCcccCeeE-EEEecCCCEEEEEcCCCcEEEE
Q 001295          868 AIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG-LAFSHALNVLVSSGADSQLCVW  921 (1106)
Q Consensus       868 a~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~-l~~s~d~~~l~s~s~Dg~i~vw  921 (1106)
                      ++++.+|.|+++|..+|+.+.++..+...+.. .++. + ..|+.++.||.|..+
T Consensus       324 ~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       324 VVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAF  376 (377)
T ss_pred             EEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence            88999999999999999999988876654433 3333 3 358889999988765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.11  E-value=1e-08  Score=100.09  Aligned_cols=274  Identities=12%  Similarity=0.136  Sum_probs=167.6

Q ss_pred             CceeeEecCCCCCCccceecccCccccccceEEEEEc---CCCc-eEEEeecCceEEEeeccccccCCCCccccccCccc
Q 001295          716 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFT---NSGN-AILALASNAIHLLWKWQRTERNSSGKATASVAPQL  791 (1106)
Q Consensus       716 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s---~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~  791 (1106)
                      |++.+|++...+... ...+..   .....+..+.|.   .+|. .++.+-..|.|.++........-           .
T Consensus        46 Gkl~Lys~~d~~~~~-l~~~q~---~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~-----------~  110 (339)
T KOG0280|consen   46 GKLHLYSLEDMKLSP-LDTLQC---TDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSV-----------H  110 (339)
T ss_pred             cceEEEeecccccCc-cceeee---ecccccceeeeeeccCCccceeeeccccceEEEEeeccceeee-----------e
Confidence            678888887765544 222211   122334444443   2344 34555567888888754321100           0


Q ss_pred             cCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCcee--eeecCCCCCeeEEEEecCCCceEE
Q 001295          792 WQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIA  868 (1106)
Q Consensus       792 w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~--~~~~~~~~~v~~l~~s~~d~~~la  868 (1106)
                      ...-++..+        ......++.|++-+..++++. +|.+.+-+.......  +..+.|.-++....|+..+.+++.
T Consensus       111 L~~ls~~ki--------~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvy  182 (339)
T KOG0280|consen  111 LRGLSSKKI--------SVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVY  182 (339)
T ss_pred             ecccchhhh--------hheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEE
Confidence            000011000        011245678888888888776 788886665544443  478899999999999987889999


Q ss_pred             EeeCCCcEEEEEee-cceEEEE-ecCcccCeeEEEEec-CCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCC
Q 001295          869 IGMDDSSIQIYNVR-VDEVKSK-LKGHSKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQ  945 (1106)
Q Consensus       869 ~g~~dg~v~iwd~~-~~~~~~~-l~~h~~~V~~l~~s~-d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  945 (1106)
                      +|++||.+.-||++ .++.+.. -+-|...|.++.-+| .+.+|++|+.|-.|++||.++..+    ++  .++  +..+
T Consensus       183 tGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k----Pl--~~~--~v~G  254 (339)
T KOG0280|consen  183 TGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK----PL--FKA--KVGG  254 (339)
T ss_pred             ecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC----cc--ccC--cccc
Confidence            99999999999998 4454443 456888999998875 478999999999999999986332    11  111  1125


Q ss_pred             CCceEEEcCC--CcEEEEEeCCeEEEEecCCceEe---eecccCCCCCCeeEEEECCCCCEEEEEE-cCCeEE-EEEcCC
Q 001295          946 SDTRVQFHQD--QIHFLVVHETQLAIFETTKLECV---KQWVPRESSAPITHATFSCDSQLVYACF-LDATVC-VFSAAN 1018 (1106)
Q Consensus       946 ~i~~~~~s~d--g~~l~~~~d~~v~i~d~~~~~~~---~~~~~~~h~~~v~~l~~s~d~~~l~t~s-~Dg~i~-vwd~~~ 1018 (1106)
                      .|..+..+|.  ++.|+++.-+..+|-+...+...   .......|.+-.+.-.|......|||++ .|+.++ +|-..+
T Consensus       255 GVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t  334 (339)
T KOG0280|consen  255 GVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT  334 (339)
T ss_pred             ceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeecc
Confidence            7888999885  44555555555556555443222   1111124554455555544445688765 566644 776555


Q ss_pred             ce
Q 001295         1019 LK 1020 (1106)
Q Consensus      1019 ~~ 1020 (1106)
                      ++
T Consensus       335 ~~  336 (339)
T KOG0280|consen  335 GE  336 (339)
T ss_pred             CC
Confidence            43

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.11  E-value=2.9e-08  Score=112.14  Aligned_cols=203  Identities=13%  Similarity=0.073  Sum_probs=116.4

Q ss_pred             CCCCcCeEEEEEccCCCEEE---EEeCC--CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecC----
Q 001295          409 KDPGVSVNRVIWSPDGSLFG---VAYSR--HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD----  479 (1106)
Q Consensus       409 ~~h~~~V~~l~~spdg~~la---s~~~d--~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~----  479 (1106)
                      ......+..-+|||||+.++   +...+  ..|.+.++.+++..+    +....+.....+|+|||+.+ +++...    
T Consensus       181 t~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~----lt~~~g~~~~p~wSPDG~~L-af~s~~~g~~  255 (428)
T PRK01029        181 TQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK----ILALQGNQLMPTFSPRKKLL-AFISDRYGNP  255 (428)
T ss_pred             ccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE----eecCCCCccceEECCCCCEE-EEEECCCCCc
Confidence            33455667789999998633   33333  358888998876543    23334455678999999963 333322    


Q ss_pred             CCcEEEEeCCCC---ceeEEEeccCCCeEEEeccccCCceEEEEEe-cCCeEEEEeC--CCC-CceeEeeCCCCeeEEEE
Q 001295          480 DKTIKVWDATNG---AKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDGKIKAWLY--DNL-GSRVDYEAPGRWCTTMA  552 (1106)
Q Consensus       480 d~~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~--~~~-~~~~~~~~~~~~v~~~~  552 (1106)
                      +-.+.+|++..+   .......++.+.....+|++  ||+.|+..+ .+|...+|.+  ... .....+......+... 
T Consensus       256 di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP--DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p-  332 (428)
T PRK01029        256 DLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP--DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCP-  332 (428)
T ss_pred             ceeEEEeecccCCCCcceEeecCCCCCcCCeEECC--CCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccce-
Confidence            333455777653   33333333333445567754  556566554 4665555543  221 1122222222223334 


Q ss_pred             EecCCCeEEEeeeccceeEEEEcCCCCEEEEEEC---CCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEe
Q 001295          553 YSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD---DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST  629 (1106)
Q Consensus       553 ~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~  629 (1106)
                                          .|+|+|++|+..+.   ...|.+||+.+++.......   ...+....|+|||+.|+...
T Consensus       333 --------------------~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~---~~~~~~p~wSpDG~~L~f~~  389 (428)
T PRK01029        333 --------------------AWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS---PENKESPSWAIDSLHLVYSA  389 (428)
T ss_pred             --------------------eECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC---CCCccceEECCCCCEEEEEE
Confidence                                45555556665443   24799999998876544322   12467799999999888654


Q ss_pred             C---CCcEEEEEccCC
Q 001295          630 N---DNGIKILATSDG  642 (1106)
Q Consensus       630 ~---dg~i~iwd~~~~  642 (1106)
                      .   ...|.++++.++
T Consensus       390 ~~~g~~~L~~vdl~~g  405 (428)
T PRK01029        390 GNSNESELYLISLITK  405 (428)
T ss_pred             CCCCCceEEEEECCCC
Confidence            3   346788888766

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.11  E-value=2.7e-08  Score=113.42  Aligned_cols=199  Identities=14%  Similarity=0.072  Sum_probs=118.3

Q ss_pred             cCCCCcCeEEEEEccCCCEEEEEeCC---CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCc--
Q 001295          408 VKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT--  482 (1106)
Q Consensus       408 ~~~h~~~V~~l~~spdg~~las~~~d---~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~--  482 (1106)
                      +..+...+.+.+|||||++|+..+.+   ..|.+||+.+++... +..+   .+.....+|+|||+. ++++.+.++.  
T Consensus       213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~---~g~~~~~~wSPDG~~-La~~~~~~g~~~  287 (448)
T PRK04792        213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSF---PGINGAPRFSPDGKK-LALVLSKDGQPE  287 (448)
T ss_pred             eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCC---CCCcCCeeECCCCCE-EEEEEeCCCCeE
Confidence            34556788999999999999987543   358899998876432 2222   334457899999996 3445555664  


Q ss_pred             EEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEe-cCCe--EEEEeCCCCCceeEeeCCCCeeEEEEEecCCCe
Q 001295          483 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDGK--IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR  559 (1106)
Q Consensus       483 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~  559 (1106)
                      |++||+.+++. ..+..+.......+|+++  ++.|+..+ .++.  |.++|+.+++. ..+..........        
T Consensus       288 Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpD--G~~I~f~s~~~g~~~Iy~~dl~~g~~-~~Lt~~g~~~~~~--------  355 (448)
T PRK04792        288 IYVVDIATKAL-TRITRHRAIDTEPSWHPD--GKSLIFTSERGGKPQIYRVNLASGKV-SRLTFEGEQNLGG--------  355 (448)
T ss_pred             EEEEECCCCCe-EECccCCCCccceEECCC--CCEEEEEECCCCCceEEEEECCCCCE-EEEecCCCCCcCe--------
Confidence            77889887764 445555555666777654  45555444 3444  55556554332 1121111111223        


Q ss_pred             EEEeeeccceeEEEEcCCCCEEEEEEC-CC--eEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCC-Cc--
Q 001295          560 TYQGFRKRSLGVVQFDTTKNRFLAAGD-DF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-NG--  633 (1106)
Q Consensus       560 ~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-g~--  633 (1106)
                                   .|+|+|++++..+. ++  .|.++|+.+++... +....   ......|+|||+.|+..+.+ +.  
T Consensus       356 -------------~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~~---~d~~ps~spdG~~I~~~~~~~g~~~  418 (448)
T PRK04792        356 -------------SITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTSTR---LDESPSVAPNGTMVIYSTTYQGKQV  418 (448)
T ss_pred             -------------eECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCCC---CCCCceECCCCCEEEEEEecCCceE
Confidence                         45555556655443 33  56677888776533 32211   12345899999988876654 33  


Q ss_pred             EEEEEcc
Q 001295          634 IKILATS  640 (1106)
Q Consensus       634 i~iwd~~  640 (1106)
                      +.+++..
T Consensus       419 l~~~~~~  425 (448)
T PRK04792        419 LAAVSID  425 (448)
T ss_pred             EEEEECC
Confidence            5666653

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.06  E-value=9.1e-08  Score=119.20  Aligned_cols=256  Identities=9%  Similarity=0.088  Sum_probs=161.3

Q ss_pred             eEEEEecCCC-EEEEEe-CCeEEEEEcCCCceeeeecC--C------------CCCeeEEEEecCCCceEEEe-eCCCcE
Q 001295          814 PCFALSKNDS-YVMSAS-GGKISLFNMMTFKTMATFMP--P------------PPAATFLAFHPQDNNIIAIG-MDDSSI  876 (1106)
Q Consensus       814 ~~l~~s~~~~-~l~~~s-dg~i~vwd~~~~~~~~~~~~--~------------~~~v~~l~~s~~d~~~la~g-~~dg~v  876 (1106)
                      ..+++++++. ++++-. ++.|++||... ..+..+.+  .            -.....+++++ ++..|+++ ..++.|
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I  648 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL  648 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence            5688887644 444444 68899999864 44333322  1            12357899998 56554444 456789


Q ss_pred             EEEEeecceEEEEecCc-----------------ccCeeEEEEec-CCCEEEEEcCCCcEEEEeCCCcccccce---eec
Q 001295          877 QIYNVRVDEVKSKLKGH-----------------SKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNR---FLQ  935 (1106)
Q Consensus       877 ~iwd~~~~~~~~~l~~h-----------------~~~V~~l~~s~-d~~~l~s~s~Dg~i~vwd~~~~~~~~~~---~~~  935 (1106)
                      +++|..++.. .++.+-                 -..-+.|+|+| ++.++++.+.++.|++||..++......   ...
T Consensus       649 r~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~  727 (1057)
T PLN02919        649 REIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER  727 (1057)
T ss_pred             EEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence            9999877653 333210                 11235799999 5667777788899999998775431100   000


Q ss_pred             ccCCCC---CCCCCCceEEEcCCCcEEEE--EeCCeEEEEecCCceEeeec-----------ccCC--------CCCCee
Q 001295          936 IPTGRT---PTAQSDTRVQFHQDQIHFLV--VHETQLAIFETTKLECVKQW-----------VPRE--------SSAPIT  991 (1106)
Q Consensus       936 ~~~~~~---~~~~~i~~~~~s~dg~~l~~--~~d~~v~i~d~~~~~~~~~~-----------~~~~--------h~~~v~  991 (1106)
                      ...+..   ..-.....++++|+|+.|.+  ..++.|++||+.++......           ....        .-....
T Consensus       728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~  807 (1057)
T PLN02919        728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL  807 (1057)
T ss_pred             cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence            000100   01134578999999986655  46789999999876532110           0000        011346


Q ss_pred             EEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCc-ccCCCC--CCCCccceEEEEeCCCCCEEEEEeCCCcEEEEe
Q 001295          992 HATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSA-YLPAGV--SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFE 1068 (1106)
Q Consensus       992 ~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~-~~~~~~--~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~ 1068 (1106)
                      .++++++|.++++-+.+++|++||..++.......... ....|.  ...--.|..+++++ +|+++++-+.++.|++||
T Consensus       808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid  886 (1057)
T PLN02919        808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLD  886 (1057)
T ss_pred             eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEE
Confidence            89999999988888899999999999887664332110 000110  00112456899998 689999999999999999


Q ss_pred             ecCCC
Q 001295         1069 PLESE 1073 (1106)
Q Consensus      1069 ~~~~~ 1073 (1106)
                      +.+++
T Consensus       887 ~~~~~  891 (1057)
T PLN02919        887 LNKGE  891 (1057)
T ss_pred             CCCCc
Confidence            99876

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.03  E-value=2.5e-07  Score=104.32  Aligned_cols=234  Identities=15%  Similarity=0.088  Sum_probs=135.0

Q ss_pred             CCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEc
Q 001295          362 QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSY  441 (1106)
Q Consensus       362 g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~  441 (1106)
                      +.+ +++++.+|.|.-+|..+|+.+-...+.                .....   ...  .++..+++++.++.+..+|.
T Consensus        65 ~~~-v~v~~~~g~v~a~d~~tG~~~W~~~~~----------------~~~~~---~p~--v~~~~v~v~~~~g~l~ald~  122 (377)
T TIGR03300        65 GGK-VYAADADGTVVALDAETGKRLWRVDLD----------------ERLSG---GVG--ADGGLVFVGTEKGEVIALDA  122 (377)
T ss_pred             CCE-EEEECCCCeEEEEEccCCcEeeeecCC----------------CCccc---ceE--EcCCEEEEEcCCCEEEEEEC
Confidence            443 777788899999999999887542221                00011   111  25778888889999999999


Q ss_pred             cCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEe-ccccCCceEEEE
Q 001295          442 HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC-PHHKENIQFIFS  520 (1106)
Q Consensus       442 ~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~-~~~~~~~~~l~s  520 (1106)
                      .+|+.+.... +   .+.+.+.-.. .+.  .++.++.++.|..||.++|+.+..+......+.... -.+.-.+..++.
T Consensus       123 ~tG~~~W~~~-~---~~~~~~~p~v-~~~--~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~  195 (377)
T TIGR03300       123 EDGKELWRAK-L---SSEVLSPPLV-ANG--LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLV  195 (377)
T ss_pred             CCCcEeeeec-c---CceeecCCEE-ECC--EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEE
Confidence            9998764321 1   1222221111 233  466677799999999999998877654332211000 000001136778


Q ss_pred             EecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcce
Q 001295          521 TALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL  600 (1106)
Q Consensus       521 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  600 (1106)
                      +..+|.+..+|..+++.........         +.+...... .........+  .+..+++++.+|.++.||..+|+.
T Consensus       196 ~~~~g~v~ald~~tG~~~W~~~~~~---------~~g~~~~~~-~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~  263 (377)
T TIGR03300       196 GFAGGKLVALDLQTGQPLWEQRVAL---------PKGRTELER-LVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRV  263 (377)
T ss_pred             ECCCCEEEEEEccCCCEeeeecccc---------CCCCCchhh-hhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcE
Confidence            8889999999998876554332110         000000000 0000000001  134677788899999999999987


Q ss_pred             eEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295          601 LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       601 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                      +.......    .....  .++..+++++.+|.+..+|..++
T Consensus       264 ~W~~~~~~----~~~p~--~~~~~vyv~~~~G~l~~~d~~tG  299 (377)
T TIGR03300       264 LWKRDASS----YQGPA--VDDNRLYVTDADGVVVALDRRSG  299 (377)
T ss_pred             EEeeccCC----ccCce--EeCCEEEEECCCCeEEEEECCCC
Confidence            76654211    11122  24566777777888888877665

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.03  E-value=2.5e-08  Score=97.40  Aligned_cols=192  Identities=18%  Similarity=0.110  Sum_probs=133.0

Q ss_pred             CCCCcEEEEEec---CCCeEEEEEeccCcEEEEecCCcceeEE-eeeeeeccCcCCccccccccCCCCcCeEEEEEccCC
Q 001295          349 QGSSPMSMDFHP---VQQTLLLVGTNVGDIGLWEVGSRERLVL-RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  424 (1106)
Q Consensus       349 h~~~v~~~~~sp---~g~~llatg~~dg~i~iwd~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg  424 (1106)
                      .+..+..+.|.-   +|...++-+-.+|.|.++.....+.... +.+..-+              -....-.++.|++.+
T Consensus        68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~k--------------i~~~~~lslD~~~~~  133 (339)
T KOG0280|consen   68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKK--------------ISVVEALSLDISTSG  133 (339)
T ss_pred             cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhh--------------hhheeeeEEEeeccC
Confidence            345566666653   4554566666778888887653322211 1111000              001134578899999


Q ss_pred             CEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCC-CCceeEE-EeccCC
Q 001295          425 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQYI-FEGHEA  502 (1106)
Q Consensus       425 ~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~~-~~~h~~  502 (1106)
                      ..++++..+|.+.+-+..... ++..+.+++|....+...|+..... ++.+||+|+.+..||++ .++.+.. .+.|..
T Consensus       134 ~~i~vs~s~G~~~~v~~t~~~-le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~  211 (339)
T KOG0280|consen  134 TKIFVSDSRGSISGVYETEMV-LEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTS  211 (339)
T ss_pred             ceEEEEcCCCcEEEEecceee-eeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeeec
Confidence            999999999998865554432 3444578899999999999987776 89999999999999999 4455544 556889


Q ss_pred             CeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCC
Q 001295          503 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG  557 (1106)
Q Consensus       503 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~  557 (1106)
                      .|.++.-++ +.+.++++|+.|-.|++||.++..+...-....+.|..+..+|.-
T Consensus       212 GV~SI~ss~-~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~  265 (339)
T KOG0280|consen  212 GVVSIYSSP-PKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEI  265 (339)
T ss_pred             ceEEEecCC-CCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchh
Confidence            999987554 345799999999999999999776655444445667777666643

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.01  E-value=1.8e-09  Score=128.67  Aligned_cols=198  Identities=19%  Similarity=0.348  Sum_probs=155.8

Q ss_pred             CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEE
Q 001295          349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  428 (1106)
Q Consensus       349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  428 (1106)
                      +-..|.++.=+|...+ .+||+.||.|++|.+..+..+..     |+            -.|. ..|+.+.|+.+|..+.
T Consensus      2207 ~v~~v~r~~sHp~~~~-Yltgs~dgsv~~~~w~~~~~v~~-----~r------------t~g~-s~vtr~~f~~qGnk~~ 2267 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPY-YLTGSQDGSVRMFEWGHGQQVVC-----FR------------TAGN-SRVTRSRFNHQGNKFG 2267 (2439)
T ss_pred             ccCceeeecCCCCCce-EEecCCCceEEEEeccCCCeEEE-----ee------------ccCc-chhhhhhhcccCCcee
Confidence            4578889999999985 88999999999999988877653     22            1333 7899999999999999


Q ss_pred             EEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEec---CCCcEEEEeCCC-CceeEEEeccCCCe
Q 001295          429 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG---DDKTIKVWDATN-GAKQYIFEGHEAPV  504 (1106)
Q Consensus       429 s~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~---~d~~i~iwd~~~-~~~~~~~~~h~~~v  504 (1106)
                      .+..||.+.+|.+..    +.....+.|.....++.|-.  .  .+++++   +++.+.+||..- +..-..-..|.+.+
T Consensus      2268 i~d~dg~l~l~q~~p----k~~~s~qchnk~~~Df~Fi~--s--~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~ga 2339 (2439)
T KOG1064|consen 2268 IVDGDGDLSLWQASP----KPYTSWQCHNKALSDFRFIG--S--LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGA 2339 (2439)
T ss_pred             eeccCCceeecccCC----cceeccccCCccccceeeee--h--hhhccccCCCCCcccchhcccCcccceeeeecCCCc
Confidence            999999999999872    34446778999999999976  3  566665   578999999652 22222237899999


Q ss_pred             EEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEE
Q 001295          505 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  584 (1106)
Q Consensus       505 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  584 (1106)
                      +++++.|..  ++|++||.+|.|++||++..+.+..+..         +                     + ...++++|
T Consensus      2340 T~l~~~P~~--qllisggr~G~v~l~D~rqrql~h~~~~---------~---------------------~-~~~~f~~~ 2386 (2439)
T KOG1064|consen 2340 TVLAYAPKH--QLLISGGRKGEVCLFDIRQRQLRHTFQA---------L---------------------D-TREYFVTG 2386 (2439)
T ss_pred             eEEEEcCcc--eEEEecCCcCcEEEeehHHHHHHHHhhh---------h---------------------h-hhheeecc
Confidence            999987655  7999999999999999997666554443         1                     1 12369999


Q ss_pred             ECCCeEEEEECCCcceeEEEcc
Q 001295          585 GDDFSIKFWDMDSVQLLTSIDA  606 (1106)
Q Consensus       585 ~~d~~i~iwd~~~~~~~~~~~~  606 (1106)
                      +..|.++||++..-..+..+..
T Consensus      2387 ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2387 SSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred             CcccceEEEEccccchhhcCch
Confidence            9999999999988877777653

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.99  E-value=4.3e-09  Score=125.66  Aligned_cols=213  Identities=12%  Similarity=0.259  Sum_probs=153.5

Q ss_pred             EEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccC
Q 001295          580 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT  659 (1106)
Q Consensus       580 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  659 (1106)
                      .+.....++...-|..+.+.....-.    ...|.++.-+|...+.++|+.||.+++|....+                 
T Consensus      2182 ~~~~~n~~~~~~tq~~~~~~~~~k~~----v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~----------------- 2240 (2439)
T KOG1064|consen 2182 RFTPSNLPWLGSTQTSRGASVMIKHP----VENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHG----------------- 2240 (2439)
T ss_pred             cCCcccCCccccceecccceeEeecc----cCceeeecCCCCCceEEecCCCceEEEEeccCC-----------------
Confidence            34444455555556554333222211    335778888888889999999999999976554                 


Q ss_pred             CCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCc
Q 001295          660 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE  739 (1106)
Q Consensus       660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~  739 (1106)
                                                                              ..|..|+..               
T Consensus      2241 --------------------------------------------------------~~v~~~rt~--------------- 2249 (2439)
T KOG1064|consen 2241 --------------------------------------------------------QQVVCFRTA--------------- 2249 (2439)
T ss_pred             --------------------------------------------------------CeEEEeecc---------------
Confidence                                                                    233444433               


Q ss_pred             cccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEe
Q 001295          740 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS  819 (1106)
Q Consensus       740 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s  819 (1106)
                        ...+++.+.|+.+|+.+..+..||.+.+|......+                          +....|......+.|-
T Consensus      2250 --g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~--------------------------~s~qchnk~~~Df~Fi 2301 (2439)
T KOG1064|consen 2250 --GNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPY--------------------------TSWQCHNKALSDFRFI 2301 (2439)
T ss_pred             --CcchhhhhhhcccCCceeeeccCCceeecccCCcce--------------------------eccccCCccccceeee
Confidence              237888999999999999999999999997641100                          1112377777777776


Q ss_pred             cCCCEEEEEe----CCeEEEEEcCC---CceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecC
Q 001295          820 KNDSYVMSAS----GGKISLFNMMT---FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG  892 (1106)
Q Consensus       820 ~~~~~l~~~s----dg~i~vwd~~~---~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~  892 (1106)
                      .  ..+++++    ++.+.+||.--   ..++.  ..|.+.++++++.| ..++|++|+.+|.|++||+...++++.++.
T Consensus      2302 ~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P-~~qllisggr~G~v~l~D~rqrql~h~~~~ 2376 (2439)
T KOG1064|consen 2302 G--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAP-KHQLLISGGRKGEVCLFDIRQRQLRHTFQA 2376 (2439)
T ss_pred             e--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcC-cceEEEecCCcCcEEEeehHHHHHHHHhhh
Confidence            5  5666654    47899999752   22233  77999999999999 899999999999999999998777766664


Q ss_pred             cccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcc
Q 001295          893 HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE  927 (1106)
Q Consensus       893 h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~  927 (1106)
                               +. ...++++++..|.++||++....
T Consensus      2377 ---------~~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2377 ---------LD-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred             ---------hh-hhheeeccCcccceEEEEccccc
Confidence                     33 46789999999999999998753

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.91  E-value=4e-09  Score=110.72  Aligned_cols=210  Identities=13%  Similarity=0.195  Sum_probs=153.5

Q ss_pred             CCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCC-------CceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEE
Q 001295          808 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT-------FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY  879 (1106)
Q Consensus       808 ~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~-------~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iw  879 (1106)
                      +|...|..++--.+.+.+++++ |.+|++|.++.       ..+..++..|..+|..+.|-. +.++++++  ||-|++|
T Consensus       733 GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~Sc--D~giHlW  809 (1034)
T KOG4190|consen  733 GHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIASC--DGGIHLW  809 (1034)
T ss_pred             CcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccceeeec--cCcceee
Confidence            3888898888777777888888 99999999863       347788899999999999998 88888765  8899999


Q ss_pred             EeecceEEEEecC--cccCeeEEEEec--CCCEEEEE-cCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcC
Q 001295          880 NVRVDEVKSKLKG--HSKRITGLAFSH--ALNVLVSS-GADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ  954 (1106)
Q Consensus       880 d~~~~~~~~~l~~--h~~~V~~l~~s~--d~~~l~s~-s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~  954 (1106)
                      |.--++++..+..  ..+.+..+..-+  |...++.+ +...+|+++|.+.++-..........+   ....+++++..+
T Consensus       810 DPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~---Pna~~R~iaVa~  886 (1034)
T KOG4190|consen  810 DPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPG---PNALTRAIAVAD  886 (1034)
T ss_pred             cccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCC---CchheeEEEecc
Confidence            9888877664321  122233333333  34444444 788999999998865433222222222   234678999999


Q ss_pred             CCcEEEEE-eCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEE-EEcCCceeEEeeC
Q 001295          955 DQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCV-FSAANLKLRCRIN 1026 (1106)
Q Consensus       955 dg~~l~~~-~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~v-wd~~~~~~~~~~~ 1026 (1106)
                      .|++++++ +.|.|.+.|.++|..+..|..-  .-....++ .|..+.|+....|.++.| |-.-+|....+.+
T Consensus       887 ~GN~lAa~LSnGci~~LDaR~G~vINswrpm--ecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~k  957 (1034)
T KOG4190|consen  887 KGNKLAAALSNGCIAILDARNGKVINSWRPM--ECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDK  957 (1034)
T ss_pred             CcchhhHHhcCCcEEEEecCCCceeccCCcc--cchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccC
Confidence            99999995 8999999999999999998731  22233333 466678888888999999 9988887766555

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.89  E-value=1.5e-08  Score=110.48  Aligned_cols=277  Identities=12%  Similarity=0.167  Sum_probs=176.5

Q ss_pred             ccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeE----------------------------E--eeeeeecc
Q 001295          347 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLV----------------------------L--RNFKVWDL  396 (1106)
Q Consensus       347 ~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~----------------------------~--~~~~~~d~  396 (1106)
                      +.-...+.++.++|.|+. +|.++.-|. .|-|+...-...                            .  ..--+|++
T Consensus        21 l~v~~~~~a~si~p~grd-i~lAsr~gl-~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnl   98 (1081)
T KOG0309|consen   21 LKVDGGFNAVSINPSGRD-IVLASRQGL-YIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNL   98 (1081)
T ss_pred             EEecCcccceeeccccch-hhhhhhcCe-EEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhh
Confidence            345678888899999886 666665443 233333211000                            0  01124555


Q ss_pred             CcCCccccccccCCCCcCeEEEEEcc-CCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEE
Q 001295          397 GACSMPLQAALVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVI  475 (1106)
Q Consensus       397 ~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~  475 (1106)
                      .........-.+.||+..|+.+.|.| ....||+++.|..|..||+.+...  .+..+..-...-..++|+-...  .+.
T Consensus        99 A~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~--p~ys~~~w~s~asqVkwnyk~p--~vl  174 (1081)
T KOG0309|consen   99 AKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR--PFYSTSSWRSAASQVKWNYKDP--NVL  174 (1081)
T ss_pred             hcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc--ceeeeecccccCceeeecccCc--chh
Confidence            55555555556889999999999999 567899999999999999998653  2233333445678899987776  466


Q ss_pred             EecCCCcEEEEeCCCC-ceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEee-CCCCeeEEEEE
Q 001295          476 TCGDDKTIKVWDATNG-AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-APGRWCTTMAY  553 (1106)
Q Consensus       476 s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~  553 (1106)
                      ..+..+.|++||.+.| .++..+++|...|+.+.|..... ..+.+++.||+|++||........... ....++..-.+
T Consensus       175 asshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~  253 (1081)
T KOG0309|consen  175 ASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRY  253 (1081)
T ss_pred             hhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhh-hhhcccCCCCceeeecccccccccceeccccCcceeccc
Confidence            6777889999999865 56789999999999998865443 468899999999999998654433222 22334444455


Q ss_pred             ecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCC-cceeEEEccCCCCCCcCeEEEccC----------C
Q 001295          554 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNKD----------G  622 (1106)
Q Consensus       554 s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~----------~  622 (1106)
                      .|-|.-.+          +-..-.++.+..-.-++....|+..+ .+.++.|.+|..  .|....|...          .
T Consensus       254 ~Pfg~g~~----------~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D--~V~eFlWR~r~e~~~d~d~rd  321 (1081)
T KOG0309|consen  254 LPFGEGYC----------IMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD--VVLEFLWRKRKECDGDYDSRD  321 (1081)
T ss_pred             cccCceeE----------eccccCCeeeeeccccchhhhhccccCCcceeeecCcch--HHHHHhhhhcccccCCCCccc
Confidence            55443110          10111111111122233344555544 457888887743  4544444332          2


Q ss_pred             CEEEEEeCCCcEEEEEccCC
Q 001295          623 CLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       623 ~~l~~~~~dg~i~iwd~~~~  642 (1106)
                      -.|++=+.|.++++|-+.+.
T Consensus       322 fQLVTWSkD~~lrlWpI~~~  341 (1081)
T KOG0309|consen  322 FQLVTWSKDQTLRLWPIDSQ  341 (1081)
T ss_pred             eeEEEeecCCceEeeeccHH
Confidence            36899999999999988653

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.89  E-value=1.1e-06  Score=109.85  Aligned_cols=276  Identities=15%  Similarity=0.183  Sum_probs=162.7

Q ss_pred             EEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEe-C
Q 001295          354 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY-S  432 (1106)
Q Consensus       354 ~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~-~  432 (1106)
                      ..+++++++..++++-+.++.|.+||... ..+...  .  ....... .....-..+-..-..+++.+++..|.++. .
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~i--g--~~g~~G~-~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~  644 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQI--G--STGEEGL-RDGSFEDATFNRPQGLAYNAKKNLLYVADTE  644 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEE--c--cCCCcCC-CCCchhccccCCCcEEEEeCCCCEEEEEeCC
Confidence            57899986554788878889999999864 332210  0  0000000 00000011122457899999888766654 4


Q ss_pred             CCeEEEEEccCCceeeeeee-------eccc-------cCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEe
Q 001295          433 RHIVQIYSYHGGDEVRQHLE-------IDAH-------VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE  498 (1106)
Q Consensus       433 d~~v~iwd~~~~~~~~~~~~-------l~~h-------~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  498 (1106)
                      ++.|+++|..++.. ..+..       +.+.       -..-..++|+|++.. ++++.+.++.|++||..++... .+.
T Consensus       645 n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~-LyVad~~~~~I~v~d~~~g~v~-~~~  721 (1057)
T PLN02919        645 NHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEK-VYIAMAGQHQIWEYNISDGVTR-VFS  721 (1057)
T ss_pred             CceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCe-EEEEECCCCeEEEEECCCCeEE-EEe
Confidence            57899999887643 21100       0000       112357999995543 6788888899999998877542 222


Q ss_pred             cc---------------CCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCC-eeEEEEEe-cCCCeEE
Q 001295          499 GH---------------EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGR-WCTTMAYS-ADGTRTY  561 (1106)
Q Consensus       499 ~h---------------~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s-~~~~~~~  561 (1106)
                      +.               -.....++++++.+ .++++.+.++.|++||+.++.......+... ......|. .+|.. .
T Consensus       722 G~G~~~~~~g~~~~~~~~~~P~GIavspdG~-~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g-~  799 (1057)
T PLN02919        722 GDGYERNLNGSSGTSTSFAQPSGISLSPDLK-ELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVG-S  799 (1057)
T ss_pred             cCCccccCCCCccccccccCccEEEEeCCCC-EEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCch-h
Confidence            11               12344577654432 3666777789999999986543211110000 00000110 01100 0


Q ss_pred             EeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCC------------CCCCcCeEEEccCCCEEEEEe
Q 001295          562 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG------------GLPASPRIRFNKDGCLLAVST  629 (1106)
Q Consensus       562 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------------~~~~v~~v~~s~~~~~l~~~~  629 (1106)
                      . ..-.....++++++|+.+++-..++.|++||..++....... .+            .......++++++|+++++-+
T Consensus       800 ~-~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG-~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt  877 (1057)
T PLN02919        800 E-VLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAG-TGKAGFKDGKALKAQLSEPAGLALGENGRLFVADT  877 (1057)
T ss_pred             h-hhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEec-cCCcCCCCCcccccccCCceEEEEeCCCCEEEEEC
Confidence            0 001123467888999888888899999999998876554331 11            122456899999999999989


Q ss_pred             CCCcEEEEEccCC
Q 001295          630 NDNGIKILATSDG  642 (1106)
Q Consensus       630 ~dg~i~iwd~~~~  642 (1106)
                      .++.|++||+.++
T Consensus       878 ~Nn~Irvid~~~~  890 (1057)
T PLN02919        878 NNSLIRYLDLNKG  890 (1057)
T ss_pred             CCCEEEEEECCCC
Confidence            9999999999886

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.87  E-value=2.6e-08  Score=102.03  Aligned_cols=167  Identities=18%  Similarity=0.169  Sum_probs=114.0

Q ss_pred             CCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEE-
Q 001295          351 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV-  429 (1106)
Q Consensus       351 ~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las-  429 (1106)
                      -.++.+.+++.|+ |+|++..+....++++.....    ..+.++..         ....   .-+++.|-.+...... 
T Consensus        63 ~a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~----~~kl~~~~---------~v~~---~~~ai~~~~~~~sv~v~  125 (390)
T KOG3914|consen   63 LAPALVLTSDSGR-LVAVATSSKQRAVFDYRENPK----GAKLLDVS---------CVPK---RPTAISFIREDTSVLVA  125 (390)
T ss_pred             ccccccccCCCce-EEEEEeCCCceEEEEEecCCC----cceeeeEe---------eccc---CcceeeeeeccceEEEE
Confidence            3455667788888 688888887777777664432    11111110         0111   2233334344444443 


Q ss_pred             --EeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEE-eccCCCeEE
Q 001295          430 --AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYS  506 (1106)
Q Consensus       430 --~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~  506 (1106)
                        .+....+.+|....+.+.    .+-||-..+..++|+||++  +++++..|..|+|-....--.+..| -||+..|..
T Consensus       126 dkagD~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~  199 (390)
T KOG3914|consen  126 DKAGDVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVST  199 (390)
T ss_pred             eecCCceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheee
Confidence              445566777777654433    2568999999999999999  8999999999999877665555544 579999999


Q ss_pred             EeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeC
Q 001295          507 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA  543 (1106)
Q Consensus       507 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  543 (1106)
                      ++...+   ..|+++|.|++|++||+.+++.+.++..
T Consensus       200 isl~~~---~~LlS~sGD~tlr~Wd~~sgk~L~t~dl  233 (390)
T KOG3914|consen  200 ISLTDN---YLLLSGSGDKTLRLWDITSGKLLDTCDL  233 (390)
T ss_pred             eeeccC---ceeeecCCCCcEEEEecccCCcccccch
Confidence            986433   5799999999999999999888765443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.85  E-value=2e-07  Score=103.34  Aligned_cols=112  Identities=12%  Similarity=0.297  Sum_probs=84.7

Q ss_pred             CCcEEEEEecCCCeEEEEEec----cCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCE
Q 001295          351 SSPMSMDFHPVQQTLLLVGTN----VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  426 (1106)
Q Consensus       351 ~~v~~~~~sp~g~~llatg~~----dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~  426 (1106)
                      ..-+-..|+|... ++|+++-    .|.|.|+- ++|+.....                 ...-   .+++++|+|..-.
T Consensus        16 avsti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~V-----------------t~P~---hatSLCWHpe~~v   73 (1416)
T KOG3617|consen   16 AVSTISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDV-----------------TYPV---HATSLCWHPEEFV   73 (1416)
T ss_pred             ccccccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCccc-----------------ccce---ehhhhccChHHHH
Confidence            3345567899888 5877764    47888884 455533210                 1122   3566999999999


Q ss_pred             EEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCC
Q 001295          427 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT  489 (1106)
Q Consensus       427 las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~  489 (1106)
                      ||.|-.-|.+.+|...+.+.-   .....|..+|..+.||++|.  .++|+..-|.|.+|...
T Consensus        74 La~gwe~g~~~v~~~~~~e~h---tv~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   74 LAQGWEMGVSDVQKTNTTETH---TVVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             HhhccccceeEEEecCCceee---eeccCCCCCceeEEecCCCC--eEEEcCCCceeEEEEee
Confidence            999999999999998875432   23457999999999999999  89999999999999865

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.82  E-value=1.2e-06  Score=86.50  Aligned_cols=206  Identities=16%  Similarity=0.172  Sum_probs=138.1

Q ss_pred             EEEecCCCEEEEEeCCeEEEEEcCCC--ceeee---ecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEe
Q 001295          816 FALSKNDSYVMSASGGKISLFNMMTF--KTMAT---FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL  890 (1106)
Q Consensus       816 l~~s~~~~~l~~~sdg~i~vwd~~~~--~~~~~---~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l  890 (1106)
                      ++.+.||++||+..|..|.|=..++.  ..+.+   -+.....-+.++||| |+.+||.+...|+|++||+....+ ..+
T Consensus         3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~l-f~I   80 (282)
T PF15492_consen    3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSEL-FVI   80 (282)
T ss_pred             eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEeccccee-EEc
Confidence            67789999999999988888766531  12222   222334568899999 999999999999999999875433 233


Q ss_pred             cC-------cccCeeEEEEecCC------CEEEEEcCCCcEEEEeCCCcc---cccceeecccCCCCCCCCCCceEEEcC
Q 001295          891 KG-------HSKRITGLAFSHAL------NVLVSSGADSQLCVWSSDGWE---KQKNRFLQIPTGRTPTAQSDTRVQFHQ  954 (1106)
Q Consensus       891 ~~-------h~~~V~~l~~s~d~------~~l~s~s~Dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~s~  954 (1106)
                      ..       -+..|.+|.|.+-.      ..|.....+|.++=|-+..+.   -.............   ..|.++.++|
T Consensus        81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp---~Gi~~~vy~p  157 (282)
T PF15492_consen   81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYP---HGINSAVYHP  157 (282)
T ss_pred             CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCC---CceeEEEEcC
Confidence            22       23567777775432      246667778888877664322   11122222222222   5889999999


Q ss_pred             CCcEEEEEe----C--------CeEEEEecCCceEe---------------------eec-----c-cCCCCCCeeEEEE
Q 001295          955 DQIHFLVVH----E--------TQLAIFETTKLECV---------------------KQW-----V-PRESSAPITHATF  995 (1106)
Q Consensus       955 dg~~l~~~~----d--------~~v~i~d~~~~~~~---------------------~~~-----~-~~~h~~~v~~l~~  995 (1106)
                      ..++|++++    +        -.+..|.+-++..-                     +..     . .......|..|..
T Consensus       158 ~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSl  237 (282)
T PF15492_consen  158 KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSL  237 (282)
T ss_pred             CCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEE
Confidence            988888731    1        14666765333210                     000     0 0112567999999


Q ss_pred             CCCCCEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295          996 SCDSQLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus       996 s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
                      ||||+.||+...+|.|.+|++.+.++.....
T Consensus       238 SPdg~~La~ih~sG~lsLW~iPsL~~~~~W~  268 (282)
T PF15492_consen  238 SPDGSLLACIHFSGSLSLWEIPSLRLQRSWK  268 (282)
T ss_pred             CCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence            9999999999999999999999998887776

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.82  E-value=3.6e-08  Score=103.77  Aligned_cols=246  Identities=11%  Similarity=0.108  Sum_probs=162.3

Q ss_pred             ccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcc-eeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCC
Q 001295          347 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE-RLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  425 (1106)
Q Consensus       347 ~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~  425 (1106)
                      .+|+..|.+++--.+... +++++.|++|++|.+.... .+.+             ....-++..|+.+|..+.|-.|-+
T Consensus       732 ~GH~~~iRai~AidNENS-FiSASkDKTVKLWSik~EgD~~~t-------------saCQfTY~aHkk~i~~igfL~~lr  797 (1034)
T KOG4190|consen  732 TGHQEKIRAIAAIDNENS-FISASKDKTVKLWSIKPEGDEIGT-------------SACQFTYQAHKKPIHDIGFLADLR  797 (1034)
T ss_pred             cCcHHHhHHHHhcccccc-eeeccCCceEEEEEeccccCcccc-------------ceeeeEhhhccCcccceeeeeccc
Confidence            359999998876666664 8899999999999987422 1110             001114689999999999999999


Q ss_pred             EEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCC-CCceEEEEecCCCcEEEEeCCCCceeEEEe-----c
Q 001295          426 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP-NKQLCVITCGDDKTIKVWDATNGAKQYIFE-----G  499 (1106)
Q Consensus       426 ~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----~  499 (1106)
                      +++++  ||-|.+||.--|..+.++..-..| +.+..+.--++ .+.++++.++...+|+++|.+.++-...++     +
T Consensus       798 ~i~Sc--D~giHlWDPFigr~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~  874 (1034)
T KOG4190|consen  798 SIASC--DGGIHLWDPFIGRLLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPG  874 (1034)
T ss_pred             eeeec--cCcceeecccccchhHhhhcCccc-CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCC
Confidence            99876  788999998877766543222223 23333333344 444355556889999999999888776665     3


Q ss_pred             cCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCC
Q 001295          500 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN  579 (1106)
Q Consensus       500 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~  579 (1106)
                      ..+.+.++++.+.  |+.++.+-..|.|.+.|.+++..+..+..-.-....++.                      |.++
T Consensus       875 Pna~~R~iaVa~~--GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa----------------------psdq  930 (1034)
T KOG4190|consen  875 PNALTRAIAVADK--GNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA----------------------PSDQ  930 (1034)
T ss_pred             CchheeEEEeccC--cchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC----------------------chhH
Confidence            3456788886544  478999999999999999987765544433222222221                      2233


Q ss_pred             EEEEEECCCeEEE-EECCCcceeEEEccCCCCCCcCeEEEc-cCCCEEEEEeCCCcEEEEE
Q 001295          580 RFLAAGDDFSIKF-WDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTNDNGIKILA  638 (1106)
Q Consensus       580 ~l~~~~~d~~i~i-wd~~~~~~~~~~~~~~~~~~v~~v~~s-~~~~~l~~~~~dg~i~iwd  638 (1106)
                      .++....|.++.+ |...+|......+....  +   ..|- .-|.-|++....+.+.+|.
T Consensus       931 ~L~~saldHslaVnWhaldgimh~q~kpppe--p---ahflqsvgpSLV~a~~Gn~lgVYa  986 (1034)
T KOG4190|consen  931 ALAQSALDHSLAVNWHALDGIMHLQDKPPPE--P---AHFLQSVGPSLVTAQNGNILGVYA  986 (1034)
T ss_pred             HHHhhcccceeEeeehhcCCeeeeccCCCCc--c---hhhhhccCceeEEeccCcEEEEEe
Confidence            4677777888888 98877765554442211  1   1121 1356677777777777774

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.80  E-value=1.4e-06  Score=97.71  Aligned_cols=157  Identities=9%  Similarity=0.000  Sum_probs=97.8

Q ss_pred             CCcEEEEEecCCCeEEEEEecc---CcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEE
Q 001295          351 SSPMSMDFHPVQQTLLLVGTNV---GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF  427 (1106)
Q Consensus       351 ~~v~~~~~sp~g~~llatg~~d---g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l  427 (1106)
                      ..+....|||||+++++..+.+   ..|.++|+.+++...                    +....+.+....|||||+.|
T Consensus       188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--------------------lt~~~g~~~~~~~SPDG~~l  247 (419)
T PRK04043        188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--------------------IASSQGMLVVSDVSKDGSKL  247 (419)
T ss_pred             CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--------------------EecCCCcEEeeEECCCCCEE
Confidence            3778999999998645543333   469999998887643                    22334556778899999988


Q ss_pred             EEEe-C--CCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCC-CcEEEEeCCCCceeEEEeccCCC
Q 001295          428 GVAY-S--RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD-KTIKVWDATNGAKQYIFEGHEAP  503 (1106)
Q Consensus       428 as~~-~--d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~h~~~  503 (1106)
                      +... .  +..|.++|+.+++..+    +..+........|+|||+.+++++...+ ..|.+.|+.+++..+.... ...
T Consensus       248 a~~~~~~g~~~Iy~~dl~~g~~~~----LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~  322 (419)
T PRK04043        248 LLTMAPKGQPDIYLYDTNTKTLTQ----ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN  322 (419)
T ss_pred             EEEEccCCCcEEEEEECCCCcEEE----cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc
Confidence            7643 2  3568888988876432    3334433455689999997544443222 2688889888776443321 111


Q ss_pred             eEEEeccccCCceEEEEEecC---------CeEEEEeCCCCC
Q 001295          504 VYSVCPHHKENIQFIFSTALD---------GKIKAWLYDNLG  536 (1106)
Q Consensus       504 v~~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~  536 (1106)
                        ...|+  ++|+.|+..+..         ..|.+.|+.++.
T Consensus       323 --~~~~S--PDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~  360 (419)
T PRK04043        323 --NSSVS--TYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY  360 (419)
T ss_pred             --CceEC--CCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC
Confidence              13554  455666655543         256666776543

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.79  E-value=3.5e-06  Score=94.52  Aligned_cols=207  Identities=8%  Similarity=0.021  Sum_probs=126.8

Q ss_pred             eEEEEEcCCCceeeeecCCCCCeeEEEEecCCCc-eEEEeeC---CCcEEEEEeecceEEEEecCcccCeeEEEEecCCC
Q 001295          832 KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN-IIAIGMD---DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN  907 (1106)
Q Consensus       832 ~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~-~la~g~~---dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~  907 (1106)
                      .|.+-|..... .+.+.... ......||| |++ .++..+.   +..|+++|+.+++..... ...+......|||||+
T Consensus       170 ~l~~~d~dg~~-~~~~~~~~-~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~  245 (419)
T PRK04043        170 NIVLADYTLTY-QKVIVKGG-LNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGS  245 (419)
T ss_pred             eEEEECCCCCc-eeEEccCC-CeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCC
Confidence            45555554433 33333233 678899999 676 4654433   347999999888654333 3455566788999998


Q ss_pred             EEEE-EcCC--CcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCC----eEEEEecCCceEeee
Q 001295          908 VLVS-SGAD--SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET----QLAIFETTKLECVKQ  980 (1106)
Q Consensus       908 ~l~s-~s~D--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~----~v~i~d~~~~~~~~~  980 (1106)
                      .|+. .+.+  ..|.++++.+++..   .+....+      ......|+|||+.|+...+.    .|.++|+.+++..+.
T Consensus       246 ~la~~~~~~g~~~Iy~~dl~~g~~~---~LT~~~~------~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl  316 (419)
T PRK04043        246 KLLLTMAPKGQPDIYLYDTNTKTLT---QITNYPG------IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV  316 (419)
T ss_pred             EEEEEEccCCCcEEEEEECCCCcEE---EcccCCC------ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC
Confidence            7764 3334  45777788775421   1221111      12456899999998885443    799999988877554


Q ss_pred             cccCCCCCCeeEEEECCCCCEEEEEEcC---------CeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCC
Q 001295          981 WVPRESSAPITHATFSCDSQLVYACFLD---------ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1051 (1106)
Q Consensus       981 ~~~~~h~~~v~~l~~s~d~~~l~t~s~D---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d 1051 (1106)
                      ... +.  .  ...|||||++|+..+..         ..|++.|++++... .+..      +  .. ..  ...|+| |
T Consensus       317 t~~-g~--~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~------~--~~-~~--~p~~SP-D  378 (419)
T PRK04043        317 VFH-GK--N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTA------N--GV-NQ--FPRFSS-D  378 (419)
T ss_pred             ccC-CC--c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCC------C--CC-cC--CeEECC-C
Confidence            331 11  1  24899999998876644         36888899888653 3321      1  01 11  478999 6


Q ss_pred             CCEEEEEeCC-CcEEEEee
Q 001295         1052 PNEFALGLSD-GGVHVFEP 1069 (1106)
Q Consensus      1052 ~~~l~t~~~D-g~v~vW~~ 1069 (1106)
                      |+.++....+ +.-.+|-+
T Consensus       379 G~~I~f~~~~~~~~~L~~~  397 (419)
T PRK04043        379 GGSIMFIKYLGNQSALGII  397 (419)
T ss_pred             CCEEEEEEccCCcEEEEEE
Confidence            8876654433 44334444

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.76  E-value=1.6e-06  Score=83.85  Aligned_cols=243  Identities=13%  Similarity=0.076  Sum_probs=153.3

Q ss_pred             CCEEEEEe-CCeEEEEEcCCCcee-eeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeE
Q 001295          822 DSYVMSAS-GGKISLFNMMTFKTM-ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG  899 (1106)
Q Consensus       822 ~~~l~~~s-dg~i~vwd~~~~~~~-~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~  899 (1106)
                      .-+|+.|+ .|...+|...+.+.. +....+...|+-+.---+...-+..++.|.++++.++.-+.....+....-.+.+
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns  163 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS  163 (344)
T ss_pred             ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence            34777776 799999998865433 3333344433322111112234566788889999888765443333222233889


Q ss_pred             EEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEecCCceEe
Q 001295          900 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECV  978 (1106)
Q Consensus       900 l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d~~~~~~~  978 (1106)
                      +++++|++++++.++...|..|.++......   +.+...  +....--+..|+.....+|+ ..||.+.|||++.....
T Consensus       164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~---~~~~~a--~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tp  238 (344)
T KOG4532|consen  164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYI---ENIYEA--PTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATP  238 (344)
T ss_pred             eEEcCCCceEEEecCCCcceEEEeCCcccee---eeeEec--ccCCCceeeeeccCcceEEEEecCCcEEEEEecccccc
Confidence            9999999999999999999999988633211   111111  11123467899999999998 59999999999876543


Q ss_pred             eecc---cCCCCCCeeEEEECCCCCE--EEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCC
Q 001295          979 KQWV---PRESSAPITHATFSCDSQL--VYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN 1053 (1106)
Q Consensus       979 ~~~~---~~~h~~~v~~l~~s~d~~~--l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~ 1053 (1106)
                      ....   ...|.+.+..+.|++-|..  |+..-.-+.+.|-|+.+++....+.+.......|....+.  ...|.. ++.
T Consensus       239 m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~if--gt~f~~-~n~  315 (344)
T KOG4532|consen  239 MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIF--GTNFNN-ENE  315 (344)
T ss_pred             hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccc--cccccC-CCc
Confidence            3221   2358999999999987654  4444445789999999998877766433332222233344  566665 344


Q ss_pred             EEEEEeCCCcEEEEeecCCC
Q 001295         1054 EFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus      1054 ~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
                      .+.+... -.+.-|++....
T Consensus       316 s~~v~~e-~~~ae~ni~srs  334 (344)
T KOG4532|consen  316 SNDVKNE-LQGAEYNILSRS  334 (344)
T ss_pred             ccccccc-hhhheeeccccc
Confidence            4444443 335667765533

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=98.76  E-value=0.0012  Score=76.44  Aligned_cols=593  Identities=11%  Similarity=0.103  Sum_probs=288.2

Q ss_pred             eccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccC--
Q 001295          346 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD--  423 (1106)
Q Consensus       346 ~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd--  423 (1106)
                      .++..+-..|+.+-++|  ++.+||.-|.=.+-.+.+-......          ...+.  .+ ..=++|..++.-.+  
T Consensus       302 ~lge~siassi~~L~ng--~lFvGS~~gdSqLi~L~~e~d~gsy----------~~ile--t~-~NLgPI~Dm~Vvd~d~  366 (1096)
T KOG1897|consen  302 YLGETSIASSINYLDNG--VLFVGSRFGDSQLIKLNTEPDVGSY----------VVILE--TF-VNLGPIVDMCVVDLDR  366 (1096)
T ss_pred             ecCCcchhhhhhcccCc--eEEEeccCCceeeEEccccCCCCch----------hhhhh--hc-ccccceeeEEEEeccc
Confidence            34556667778788888  5888888776566555443222100          00000  11 11237777776542  


Q ss_pred             --CCEEEEEe---CCCeEEEEEccCCceeeeeeeeccccCCeeEEE--EcCCCCceEEEEecCCCcEEEEeCCCCceeEE
Q 001295          424 --GSLFGVAY---SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIA--FSHPNKQLCVITCGDDKTIKVWDATNGAKQYI  496 (1106)
Q Consensus       424 --g~~las~~---~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~--~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~  496 (1106)
                        +..+++|+   .||+++|..-.-+-.......+.| -..++.+.  +.++-.. +++.+-- +.-++..+...-....
T Consensus       367 q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~-ylvlsf~-~eTrvl~i~~e~ee~~  443 (1096)
T KOG1897|consen  367 QGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDN-YLVLSFI-SETRVLNISEEVEETE  443 (1096)
T ss_pred             cCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCc-EEEEEec-cceEEEEEccceEEec
Confidence              23455553   689999986543322222223555 34566776  4443332 3333322 2223333322211111


Q ss_pred             EeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcC
Q 001295          497 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT  576 (1106)
Q Consensus       497 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~  576 (1106)
                      ..+.......+..+. -+++.|+=.. ...||+++-.  .....+....+.....                      .+.
T Consensus       444 ~~gf~~~~~Tif~S~-i~g~~lvQvT-s~~iRl~ss~--~~~~~W~~p~~~ti~~----------------------~~~  497 (1096)
T KOG1897|consen  444 DPGFSTDEQTIFCST-INGNQLVQVT-SNSIRLVSSA--GLRSEWRPPGKITIGV----------------------VSA  497 (1096)
T ss_pred             cccccccCceEEEEc-cCCceEEEEe-cccEEEEcch--hhhhcccCCCceEEEE----------------------Eee
Confidence            112212222221111 1112222111 2235555432  2222222222221111                      122


Q ss_pred             CCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccC--C----CEEEEEeCCCcEEEEEccCCchhhhhhc
Q 001295          577 TKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD--G----CLLAVSTNDNGIKILATSDGIRLLRTFE  650 (1106)
Q Consensus       577 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~--~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~  650 (1106)
                      +...++.++.++.+...++..+. ++....+.-...|.|+.++|-  +    +++++|..+..+.+.-.......+... 
T Consensus       498 n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~-  575 (1096)
T KOG1897|consen  498 NASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHE-  575 (1096)
T ss_pred             cceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeee-
Confidence            22247777777777777776655 222222222346889999973  2    378888887776655332221111110 


Q ss_pred             ccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCc
Q 001295          651 NLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPN  730 (1106)
Q Consensus       651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~  730 (1106)
                         ....        ...|-+                   ..+.++      -.+..+|.++..||.+.-|.+.......
T Consensus       576 ---~l~~--------~~iPRS-------------------Il~~~~------e~d~~yLlvalgdG~l~~fv~d~~tg~l  619 (1096)
T KOG1897|consen  576 ---QLSG--------EIIPRS-------------------ILLTTF------EGDIHYLLVALGDGALLYFVLDINTGQL  619 (1096)
T ss_pred             ---ccCC--------Cccchh-------------------eeeEEe------eccceEEEEEcCCceEEEEEEEcccceE
Confidence               0000        000000                   001111      1236788999999998777665432111


Q ss_pred             -cceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCC
Q 001295          731 -QCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP  809 (1106)
Q Consensus       731 -~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  809 (1106)
                       ..+..    .-...++.--.|+..++.-+.+.+|.-..+|.-+                       ++++...+.- ..
T Consensus       620 sd~Kk~----~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n-----------------------~kLv~spls~-ke  671 (1096)
T KOG1897|consen  620 SDRKKV----TLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN-----------------------GKLVYSPLSL-KE  671 (1096)
T ss_pred             cccccc----ccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC-----------------------CcEEEeccch-HH
Confidence             11100    1134455556676666655555566444444322                       1111100000 00


Q ss_pred             CCCeeEEEEecCCCEEEEEeCCeEEEEEcCCCce--eeeecCCCCCeeEEEEecCCCceEEEeeC-----------C---
Q 001295          810 EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKT--MATFMPPPPAATFLAFHPQDNNIIAIGMD-----------D---  873 (1106)
Q Consensus       810 ~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~--~~~~~~~~~~v~~l~~s~~d~~~la~g~~-----------d---  873 (1106)
                      -..+..+.-+.-...++++..+.+++.-++.-+.  ++++. -......+++.+ ...++++.+.           .   
T Consensus       672 v~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~  749 (1096)
T KOG1897|consen  672 VNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEYEV  749 (1096)
T ss_pred             hhhhcccccccCCceEEEecCCceEEEEecchhhcceeeec-CCCChhheEecc-cceEEEEEecccccchhhcCCcceE
Confidence            0111111111223467777777777777664322  23333 223455666655 3334433321           1   


Q ss_pred             CcEEEEEeecceEEEEecCc----ccCeeEEEEecC-CCEEEEEcC----------CCcEEEEeCCCcccccceeecccC
Q 001295          874 SSIQIYNVRVDEVKSKLKGH----SKRITGLAFSHA-LNVLVSSGA----------DSQLCVWSSDGWEKQKNRFLQIPT  938 (1106)
Q Consensus       874 g~v~iwd~~~~~~~~~l~~h----~~~V~~l~~s~d-~~~l~s~s~----------Dg~i~vwd~~~~~~~~~~~~~~~~  938 (1106)
                      ..++++|-++.+.+...+-.    ...|.++.|..| +.++++|..          .|.|.|+.+..............+
T Consensus       750 s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~  829 (1096)
T KOG1897|consen  750 SFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVK  829 (1096)
T ss_pred             EEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeec
Confidence            14667776665544332211    124555668888 677777753          367788877662222111111111


Q ss_pred             CCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcC-
Q 001295          939 GRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAA- 1017 (1106)
Q Consensus       939 ~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~- 1017 (1106)
                      |        ...+...-...++++-...|++|++.+.+.++.-.  .|..++..+...-.|..++.|..=++|.+-... 
T Consensus       830 G--------av~aL~~fngkllA~In~~vrLye~t~~~eLr~e~--~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~  899 (1096)
T KOG1897|consen  830 G--------AVYALVEFNGKLLAGINQSVRLYEWTTERELRIEC--NISNPIIALDLQVKGDEIAVGDLMRSITLLQYKG  899 (1096)
T ss_pred             c--------ceeehhhhCCeEEEecCcEEEEEEccccceehhhh--cccCCeEEEEEEecCcEEEEeeccceEEEEEEec
Confidence            1        22233333344555667889999999886665543  678899999999999999999887877765554 


Q ss_pred             -CceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecC
Q 001295         1018 -NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1071 (1106)
Q Consensus      1018 -~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~ 1071 (1106)
                       .|...-.-  .++.|       -|.+++.+-.  ++.++-+..+|.+++-..++
T Consensus       900 ~eg~f~evA--rD~~p-------~Wmtaveil~--~d~ylgae~~gNlf~v~~d~  943 (1096)
T KOG1897|consen  900 DEGNFEEVA--RDYNP-------NWMTAVEILD--DDTYLGAENSGNLFTVRKDS  943 (1096)
T ss_pred             cCCceEEee--hhhCc-------cceeeEEEec--CceEEeecccccEEEEEecC
Confidence             33343221  22333       2333566663  56677777889998887653

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.75  E-value=8.5e-06  Score=92.20  Aligned_cols=310  Identities=10%  Similarity=0.053  Sum_probs=171.2

Q ss_pred             EEEEecCCCcEEEEeCCCCceeEEEeccCC--CeE-----EEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCC
Q 001295          473 CVITCGDDKTIKVWDATNGAKQYIFEGHEA--PVY-----SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG  545 (1106)
Q Consensus       473 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~--~v~-----~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  545 (1106)
                      .++.++.++.+.-+|.++|+.+....-...  ...     .+.-.+.-.+..++.++.+|.+..+|.++++.+.......
T Consensus        71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~  150 (394)
T PRK11138         71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG  150 (394)
T ss_pred             EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence            466777788999999999998876543220  000     0000011122467788889999999999988877665443


Q ss_pred             CeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCC---CcCeEEEccCC
Q 001295          546 RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP---ASPRIRFNKDG  622 (1106)
Q Consensus       546 ~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~---~v~~v~~s~~~  622 (1106)
                      ....+...                       .+..++.+..++.|+.+|..+|+.+..........   ...+...  .+
T Consensus       151 ~~~ssP~v-----------------------~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~  205 (394)
T PRK11138        151 EALSRPVV-----------------------SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AF  205 (394)
T ss_pred             ceecCCEE-----------------------ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--EC
Confidence            21111000                       02246777888999999999999988775431100   0011111  23


Q ss_pred             CEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccc
Q 001295          623 CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRS  702 (1106)
Q Consensus       623 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  702 (1106)
                      ..++.++.+|.+..+|..++.. .-.......               .+                               
T Consensus       206 ~~v~~~~~~g~v~a~d~~~G~~-~W~~~~~~~---------------~~-------------------------------  238 (394)
T PRK11138        206 GGAIVGGDNGRVSAVLMEQGQL-IWQQRISQP---------------TG-------------------------------  238 (394)
T ss_pred             CEEEEEcCCCEEEEEEccCChh-hheeccccC---------------CC-------------------------------
Confidence            4567778889999999888732 211100000               00                               


Q ss_pred             cCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCc
Q 001295          703 LADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGK  782 (1106)
Q Consensus       703 ~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~  782 (1106)
                                .. ..-+++++                  ...++    +  .+..+++++.+|.+..+|..+++      
T Consensus       239 ----------~~-~~~~~~~~------------------~~sP~----v--~~~~vy~~~~~g~l~ald~~tG~------  277 (394)
T PRK11138        239 ----------AT-EIDRLVDV------------------DTTPV----V--VGGVVYALAYNGNLVALDLRSGQ------  277 (394)
T ss_pred             ----------cc-chhccccc------------------CCCcE----E--ECCEEEEEEcCCeEEEEECCCCC------
Confidence                      00 00000000                  00010    0  12345556667777766654321      


Q ss_pred             cccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCC-CCeeEEEEe
Q 001295          783 ATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAFH  860 (1106)
Q Consensus       783 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~-~~v~~l~~s  860 (1106)
                             .+|....+.              ...+..  ++..+..++ +|.+..+|..+++.+....... ....+..+.
T Consensus       278 -------~~W~~~~~~--------------~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~  334 (394)
T PRK11138        278 -------IVWKREYGS--------------VNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY  334 (394)
T ss_pred             -------EEEeecCCC--------------ccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE
Confidence                   134322110              011222  344444444 8999999999987765433211 122233332


Q ss_pred             cCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeE-EEEecCCCEEEEEcCCCcEEEEeC
Q 001295          861 PQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG-LAFSHALNVLVSSGADSQLCVWSS  923 (1106)
Q Consensus       861 ~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~-l~~s~d~~~l~s~s~Dg~i~vwd~  923 (1106)
                        + ..|+.++.||.|++.|..+|+.+.+.+-....+.+ ..+  .+..|+.++.||.|..++.
T Consensus       335 --~-g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        335 --N-GYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             --C-CEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence              3 46677899999999999999988777544333332 223  2457888899998887754

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.75  E-value=3.9e-06  Score=83.01  Aligned_cols=216  Identities=13%  Similarity=0.118  Sum_probs=135.2

Q ss_pred             EEEecCCCceEEEeeCCCcEEEEEeec--ceEEEEecC---cccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccc
Q 001295          857 LAFHPQDNNIIAIGMDDSSIQIYNVRV--DEVKSKLKG---HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN  931 (1106)
Q Consensus       857 l~~s~~d~~~la~g~~dg~v~iwd~~~--~~~~~~l~~---h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~  931 (1106)
                      ++.+. +|++||+- .|..|.|-..++  ..++.+.+-   ..-.-..++||||+.+||.+...|+|+++|+.......-
T Consensus         3 ~~~~~-~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I   80 (282)
T PF15492_consen    3 LALSS-DGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVI   80 (282)
T ss_pred             eeecC-CCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEc
Confidence            45666 88888865 577787766544  223333332   233456799999999999999999999999986432211


Q ss_pred             eeecccCCCCCCCCCCceEEEcCCC-------cEEEEEeCCeEEEEecCC-----ceEeeecccCC-CCCCeeEEEECCC
Q 001295          932 RFLQIPTGRTPTAQSDTRVQFHQDQ-------IHFLVVHETQLAIFETTK-----LECVKQWVPRE-SSAPITHATFSCD  998 (1106)
Q Consensus       932 ~~~~~~~~~~~~~~~i~~~~~s~dg-------~~l~~~~d~~v~i~d~~~-----~~~~~~~~~~~-h~~~v~~l~~s~d  998 (1106)
                      ....  ........+|..+.|-+--       .+|+...+|.++-|-+..     .+.-..+.... +...|.++.+.|.
T Consensus        81 ~p~~--~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~  158 (282)
T PF15492_consen   81 PPAM--SFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK  158 (282)
T ss_pred             Cccc--ccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence            1101  0111222466777776532       455667888888777632     22333333333 3779999999999


Q ss_pred             CCEEEEEEc----CC-------eEEEEEcCCceeEEeeCC---------------------CcccCCCCCCCCccceEEE
Q 001295          999 SQLVYACFL----DA-------TVCVFSAANLKLRCRINP---------------------SAYLPAGVSSSNVHPLVIA 1046 (1106)
Q Consensus       999 ~~~l~t~s~----Dg-------~i~vwd~~~~~~~~~~~~---------------------~~~~~~~~~~~~v~~~~~~ 1046 (1106)
                      .++|+.|+.    |+       -+..|.+-++........                     ..+...+.....|.  .+.
T Consensus       159 h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~--kmS  236 (282)
T PF15492_consen  159 HRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIF--KMS  236 (282)
T ss_pred             CCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceE--EEE
Confidence            998776652    11       266787654433222110                     00111111222244  788


Q ss_pred             EeCCCCCEEEEEeCCCcEEEEeecCCC--CccCCC
Q 001295         1047 AHPQEPNEFALGLSDGGVHVFEPLESE--GKWGVP 1079 (1106)
Q Consensus      1047 ~~~~d~~~l~t~~~Dg~v~vW~~~~~~--~~~~~~ 1079 (1106)
                      .+| ||..||+.+.+|.|.+|+++.-.  +.|...
T Consensus       237 lSP-dg~~La~ih~sG~lsLW~iPsL~~~~~W~~~  270 (282)
T PF15492_consen  237 LSP-DGSLLACIHFSGSLSLWEIPSLRLQRSWKQD  270 (282)
T ss_pred             ECC-CCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence            889 79999999999999999998776  666654

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.73  E-value=4.2e-06  Score=87.80  Aligned_cols=224  Identities=14%  Similarity=0.124  Sum_probs=138.2

Q ss_pred             CCeEEEEEcCCCceeeeecCC--CCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCC
Q 001295          830 GGKISLFNMMTFKTMATFMPP--PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN  907 (1106)
Q Consensus       830 dg~i~vwd~~~~~~~~~~~~~--~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~  907 (1106)
                      +|+|..||..+++.+......  .....+..+ + ++..+++++.++.|+.||..+|+.+.+... ...+.... ..++.
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~   77 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-P-DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGG   77 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-E-ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETT
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEE-E-eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccc
Confidence            588999999999988776531  122222233 2 345666678999999999999998877765 22222222 23455


Q ss_pred             EEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeEEEEecCCceEeeecccCCC
Q 001295          908 VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRES  986 (1106)
Q Consensus       908 ~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v~i~d~~~~~~~~~~~~~~h  986 (1106)
                      .++.++.|+.|..+|..+++.............    ..........++..++++ .++.|..+|+++|+.+-.......
T Consensus        78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~  153 (238)
T PF13360_consen   78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA----GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP  153 (238)
T ss_dssp             EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC----STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred             ccccccceeeeEecccCCcceeeeecccccccc----ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence            667777888999999999876443112111110    011222233336666664 589999999999999777654221


Q ss_pred             C--CC------eeEEEECCCCCEEEEEEcCCe-EEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEE
Q 001295          987 S--AP------ITHATFSCDSQLVYACFLDAT-VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1057 (1106)
Q Consensus       987 ~--~~------v~~l~~s~d~~~l~t~s~Dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t 1057 (1106)
                      .  ..      +..-.+..++ .++.++.++. +.+ |+.+++.+-...     ..+     ..  . .... ++..|+.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-----~~~-----~~--~-~~~~-~~~~l~~  217 (238)
T PF13360_consen  154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-----ISG-----IY--S-LPSV-DGGTLYV  217 (238)
T ss_dssp             -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-----SS------EC--E-CEEC-CCTEEEE
T ss_pred             CCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-----CCC-----cc--C-Ccee-eCCEEEE
Confidence            1  11      1222233345 6666777775 555 999999663222     111     11  1 1233 4678887


Q ss_pred             EeCCCcEEEEeecCCCCccC
Q 001295         1058 GLSDGGVHVFEPLESEGKWG 1077 (1106)
Q Consensus      1058 ~~~Dg~v~vW~~~~~~~~~~ 1077 (1106)
                      ++.|+.|..||+.+++..|.
T Consensus       218 ~~~~~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  218 TSSDGRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             EETTTEEEEEETTTTEEEEE
T ss_pred             EeCCCEEEEEECCCCCEEeE
Confidence            77999999999999997774

...

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.72  E-value=8.1e-06  Score=83.74  Aligned_cols=247  Identities=15%  Similarity=0.187  Sum_probs=146.7

Q ss_pred             cEEEEEecCCCeEEEEEeccCc-EEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEe
Q 001295          353 PMSMDFHPVQQTLLLVGTNVGD-IGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY  431 (1106)
Q Consensus       353 v~~~~~sp~g~~llatg~~dg~-i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~  431 (1106)
                      .-.++.+|+....++.+-.-|+ ..+||..+++......           .-...-|.||      -+||+||++|.+.=
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~-----------a~~gRHFyGH------g~fs~dG~~LytTE   69 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW-----------APPGRHFYGH------GVFSPDGRLLYTTE   69 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc-----------CCCCCEEecC------EEEcCCCCEEEEec
Confidence            3467888966657888777664 7899999998775311           1111235667      57999999999863


Q ss_pred             -----CCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecC----------------CCcEEEEeCCC
Q 001295          432 -----SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD----------------DKTIKVWDATN  490 (1106)
Q Consensus       432 -----~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~----------------d~~i~iwd~~~  490 (1106)
                           ..|.|-|||...+  ++.+.++..|.-.-..+.+.|||+.+.++-|+-                +-++.+-|..+
T Consensus        70 nd~~~g~G~IgVyd~~~~--~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~s  147 (305)
T PF07433_consen   70 NDYETGRGVIGVYDAARG--YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARS  147 (305)
T ss_pred             cccCCCcEEEEEEECcCC--cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCC
Confidence                 3488999999932  344456777777778899999998655554542                33566667788


Q ss_pred             CceeEE--E--eccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeec
Q 001295          491 GAKQYI--F--EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  566 (1106)
Q Consensus       491 ~~~~~~--~--~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  566 (1106)
                      |+.+..  +  .-|...|..+++..+  |..++..-..|.-     ....++.-+.........+...++..    ..-.
T Consensus       148 G~ll~q~~Lp~~~~~lSiRHLa~~~~--G~V~~a~Q~qg~~-----~~~~PLva~~~~g~~~~~~~~p~~~~----~~l~  216 (305)
T PF07433_consen  148 GALLEQVELPPDLHQLSIRHLAVDGD--GTVAFAMQYQGDP-----GDAPPLVALHRRGGALRLLPAPEEQW----RRLN  216 (305)
T ss_pred             CceeeeeecCccccccceeeEEecCC--CcEEEEEecCCCC-----CccCCeEEEEcCCCcceeccCChHHH----HhhC
Confidence            887765  4  337777888886443  3333333222210     00001111111111111111111000    0112


Q ss_pred             cceeEEEEcCCCCEEEEE-ECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEE
Q 001295          567 RSLGVVQFDTTKNRFLAA-GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIK  635 (1106)
Q Consensus       567 ~~i~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~  635 (1106)
                      +-+.+++++.++.++++. -..+.+.+||..+++.+......    .+..++-.+++ ++++ +..|.+.
T Consensus       217 ~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~----D~cGva~~~~~-f~~s-sG~G~~~  280 (305)
T PF07433_consen  217 GYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP----DACGVAPTDDG-FLVS-SGQGQLI  280 (305)
T ss_pred             CceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC----ceeeeeecCCc-eEEe-CCCccEE
Confidence            245567777777667554 47889999999999998877633    45667777666 4444 4345543

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.71  E-value=3.4e-07  Score=89.95  Aligned_cols=226  Identities=15%  Similarity=0.209  Sum_probs=140.2

Q ss_pred             CCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCc--eeeeeeeeccccC------------CeeEEEEcCCCCceEEEE
Q 001295          411 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD--EVRQHLEIDAHVG------------GVNDIAFSHPNKQLCVIT  476 (1106)
Q Consensus       411 h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~--~~~~~~~l~~h~~------------~V~~~~~s~d~~~~~l~s  476 (1106)
                      ....|+++.|...|.|||+|...|.|.++.-....  ..+-+..+++|..            .|..+.|..++..-.++.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            35579999999999999999999999999765432  1222334556653            488899988776557777


Q ss_pred             ecCCCcEEEEeCCCCc-------------------ee-----------------------EEE-eccCCCeEEEeccccC
Q 001295          477 CGDDKTIKVWDATNGA-------------------KQ-----------------------YIF-EGHEAPVYSVCPHHKE  513 (1106)
Q Consensus       477 ~~~d~~i~iwd~~~~~-------------------~~-----------------------~~~-~~h~~~v~~~~~~~~~  513 (1106)
                      .+.|++|++|.+....                   ++                       +.. ..|.-.+.++.+..+.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            8889999999875320                   00                       001 2456667777764433


Q ss_pred             CceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCC-EEEEEECCCeEEE
Q 001295          514 NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN-RFLAAGDDFSIKF  592 (1106)
Q Consensus       514 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i  592 (1106)
                        ..+++ ..|=.|.+|+++-...-..+         +..-|..-    ..-...|++..|+|... .+.-.+..|.|++
T Consensus       185 --et~lS-aDdLrINLWnl~i~D~sFnI---------VDiKP~nm----eeLteVItSaeFhp~~cn~fmYSsSkG~Ikl  248 (460)
T COG5170         185 --ETLLS-ADDLRINLWNLEIIDGSFNI---------VDIKPHNM----EELTEVITSAEFHPEMCNVFMYSSSKGEIKL  248 (460)
T ss_pred             --heeee-ccceeeeeccccccCCceEE---------EeccCccH----HHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence              44444 45788999988753332211         11111100    00001233444555433 3445677899999


Q ss_pred             EECCCccee------E--EEccC------CCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccc
Q 001295          593 WDMDSVQLL------T--SIDAD------GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA  653 (1106)
Q Consensus       593 wd~~~~~~~------~--~~~~~------~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  653 (1106)
                      -|++...+-      .  .+.+.      +-...|..+.|+++|+++++-+. -++++||++....+++++.-|.
T Consensus       249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~  322 (460)
T COG5170         249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHC  322 (460)
T ss_pred             hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHH
Confidence            998743211      1  11111      11235778999999999988766 6899999988777776664443

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.69  E-value=1.6e-05  Score=89.89  Aligned_cols=211  Identities=10%  Similarity=0.016  Sum_probs=121.6

Q ss_pred             CCeEEEEEcCCCceeeeecCCCCCe-----eEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcc----c---Ce
Q 001295          830 GGKISLFNMMTFKTMATFMPPPPAA-----TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS----K---RI  897 (1106)
Q Consensus       830 dg~i~vwd~~~~~~~~~~~~~~~~v-----~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~----~---~V  897 (1106)
                      +|.|..+|.++|+.+..+.......     .+-...  ++ .++.++.+|.+..+|..+|+.+-......    .   ..
T Consensus       169 ~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~  245 (394)
T PRK11138        169 NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRL  245 (394)
T ss_pred             CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcc
Confidence            6777777777777665554321110     111122  23 45667788999999999887665432110    0   01


Q ss_pred             eEEEEec--CCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCc
Q 001295          898 TGLAFSH--ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL  975 (1106)
Q Consensus       898 ~~l~~s~--d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~  975 (1106)
                      ..+.-+|  .+..++.++.+|.+..+|..+++..-....    +      ....+.. .+++.++...++.+..+|..++
T Consensus       246 ~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~----~------~~~~~~~-~~~~vy~~~~~g~l~ald~~tG  314 (394)
T PRK11138        246 VDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY----G------SVNDFAV-DGGRIYLVDQNDRVYALDTRGG  314 (394)
T ss_pred             cccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC----C------CccCcEE-ECCEEEEEcCCCeEEEEECCCC
Confidence            1111122  245677777899999999998764322111    1      1111222 2445555578899999999998


Q ss_pred             eEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEE
Q 001295          976 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEF 1055 (1106)
Q Consensus       976 ~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l 1055 (1106)
                      +.+-...... .....+..+  .+.+|+.++.||.|++.|..+|+.+.+...    ..+  .....|   .+.   +..|
T Consensus       315 ~~~W~~~~~~-~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~----~~~--~~~s~P---~~~---~~~l  379 (394)
T PRK11138        315 VELWSQSDLL-HRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKV----DSS--GFLSEP---VVA---DDKL  379 (394)
T ss_pred             cEEEcccccC-CCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc----CCC--cceeCC---EEE---CCEE
Confidence            7644322111 111222222  256778889999999999999999887652    111  010111   122   3578


Q ss_pred             EEEeCCCcEEEEee
Q 001295         1056 ALGLSDGGVHVFEP 1069 (1106)
Q Consensus      1056 ~t~~~Dg~v~vW~~ 1069 (1106)
                      +.++.||.|+.++.
T Consensus       380 ~v~t~~G~l~~~~~  393 (394)
T PRK11138        380 LIQARDGTVYAITR  393 (394)
T ss_pred             EEEeCCceEEEEeC
Confidence            88899999988764

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.69  E-value=8.5e-06  Score=83.57  Aligned_cols=185  Identities=12%  Similarity=0.141  Sum_probs=127.5

Q ss_pred             EEEEecCCCEEEEEe------CCeEEEEEcC-CCceeeeecCCCCCeeEEEEecCCCceEEEee----------------
Q 001295          815 CFALSKNDSYVMSAS------GGKISLFNMM-TFKTMATFMPPPPAATFLAFHPQDNNIIAIGM----------------  871 (1106)
Q Consensus       815 ~l~~s~~~~~l~~~s------dg~i~vwd~~-~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~----------------  871 (1106)
                      .-+||+||++|.+.-      .|.|-|||.. +.+.+.++..+.-.-..+.+.| |++.|+++.                
T Consensus        55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl  133 (305)
T PF07433_consen   55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNL  133 (305)
T ss_pred             CEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecCh
Confidence            368999999999884      2779999999 7778888888777777888999 787776653                


Q ss_pred             --CCCcEEEEEeecceEEEE--e--cCcccCeeEEEEecCCCEEEEEcCCC-------cEEEEeCCCcccccceeecccC
Q 001295          872 --DDSSIQIYNVRVDEVKSK--L--KGHSKRITGLAFSHALNVLVSSGADS-------QLCVWSSDGWEKQKNRFLQIPT  938 (1106)
Q Consensus       872 --~dg~v~iwd~~~~~~~~~--l--~~h~~~V~~l~~s~d~~~l~s~s~Dg-------~i~vwd~~~~~~~~~~~~~~~~  938 (1106)
                        .+-++...|..+|+++.+  +  ..|..+|..|++.++|..++..=..|       .|-+++-..  .  ...+....
T Consensus       134 ~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~--~~~~~~p~  209 (305)
T PF07433_consen  134 DTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--A--LRLLPAPE  209 (305)
T ss_pred             hhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--c--ceeccCCh
Confidence              122455667788888877  4  34888999999999987666543322       133333322  1  01111111


Q ss_pred             C-CCCCCCCCceEEEcCCCcEEEEE--eCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCe
Q 001295          939 G-RTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT 1010 (1106)
Q Consensus       939 ~-~~~~~~~i~~~~~s~dg~~l~~~--~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~ 1010 (1106)
                      . -......+-++++++++.+++++  ..+.+.+||..+++.+....    -..+..++-.+++ ++++.+ .|.
T Consensus       210 ~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~----l~D~cGva~~~~~-f~~ssG-~G~  278 (305)
T PF07433_consen  210 EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP----LPDACGVAPTDDG-FLVSSG-QGQ  278 (305)
T ss_pred             HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc----cCceeeeeecCCc-eEEeCC-Ccc
Confidence            0 01122578899999999988874  56789999999999988765    4467777777777 666544 444

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.67  E-value=3.3e-06  Score=94.07  Aligned_cols=114  Identities=18%  Similarity=0.306  Sum_probs=86.4

Q ss_pred             EEEEEccCCCEEEEEe----CCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCC
Q 001295          416 NRVIWSPDGSLFGVAY----SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG  491 (1106)
Q Consensus       416 ~~l~~spdg~~las~~----~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~  491 (1106)
                      +-.+|+|...++|+++    ..|.|-||- ++|++-+.. +..-   .+++++|+|..-  +|+.|=.-|.+.+|...+.
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V-t~P~---hatSLCWHpe~~--vLa~gwe~g~~~v~~~~~~   91 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV-TYPV---HATSLCWHPEEF--VLAQGWEMGVSDVQKTNTT   91 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc-ccce---ehhhhccChHHH--HHhhccccceeEEEecCCc
Confidence            4457999999998886    357888884 455533211 2222   357799999876  7888888999999998777


Q ss_pred             ceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCce
Q 001295          492 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR  538 (1106)
Q Consensus       492 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  538 (1106)
                      +.......|..+|..+.|+++  |..++++..-|.+.+|..+-.+..
T Consensus        92 e~htv~~th~a~i~~l~wS~~--G~~l~t~d~~g~v~lwr~d~~g~~  136 (1416)
T KOG3617|consen   92 ETHTVVETHPAPIQGLDWSHD--GTVLMTLDNPGSVHLWRYDVIGEI  136 (1416)
T ss_pred             eeeeeccCCCCCceeEEecCC--CCeEEEcCCCceeEEEEeeecccc
Confidence            766666779999999999655  478999999999999988754433

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.66  E-value=2.2e-07  Score=95.40  Aligned_cols=167  Identities=20%  Similarity=0.267  Sum_probs=114.7

Q ss_pred             CeEEEEEccCCCEEEEEeCCCeEEEEEccCCce-eeeeeeeccccCCeeEEEEcCCCCce-EEEEecCCCcEEEEeCCCC
Q 001295          414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDE-VRQHLEIDAHVGGVNDIAFSHPNKQL-CVITCGDDKTIKVWDATNG  491 (1106)
Q Consensus       414 ~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~-~~~~~~l~~h~~~V~~~~~s~d~~~~-~l~s~~~d~~i~iwd~~~~  491 (1106)
                      .+..+..++++++||++..+....++++..... .+...... -...-+++.|..+.... +....++...+.+|....+
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~  142 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG  142 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence            345566778888888887777777777665432 11111111 12233444554444431 3334566778888887764


Q ss_pred             ceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEee-CCCCeeEEEEEecCCCeEEEeeecccee
Q 001295          492 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-APGRWCTTMAYSADGTRTYQGFRKRSLG  570 (1106)
Q Consensus       492 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~~~~~~~~~i~  570 (1106)
                      . ..-+-||-..++.++|++++  ++|+++..|..|++-.+...-.+..+. +|...|..++..++..            
T Consensus       143 ~-~~~~lGhvSml~dVavS~D~--~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~------------  207 (390)
T KOG3914|consen  143 R-CEPILGHVSMLLDVAVSPDD--QFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYL------------  207 (390)
T ss_pred             C-cchhhhhhhhhheeeecCCC--CEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCce------------
Confidence            4 34456899999999987655  899999999999998776655554443 4777788887776653            


Q ss_pred             EEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEcc
Q 001295          571 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA  606 (1106)
Q Consensus       571 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  606 (1106)
                                |++++.|++|++||+.+|+.+.++..
T Consensus       208 ----------LlS~sGD~tlr~Wd~~sgk~L~t~dl  233 (390)
T KOG3914|consen  208 ----------LLSGSGDKTLRLWDITSGKLLDTCDL  233 (390)
T ss_pred             ----------eeecCCCCcEEEEecccCCcccccch
Confidence                      89999999999999999998877653

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.65  E-value=1.2e-07  Score=103.61  Aligned_cols=218  Identities=14%  Similarity=0.228  Sum_probs=145.8

Q ss_pred             ccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc-CCC
Q 001295          347 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGS  425 (1106)
Q Consensus       347 ~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~  425 (1106)
                      .+|+..|+.+-|+|....++|+.+.|..|..||+.+....    |..|              ..-...-..|+|+- ++.
T Consensus       111 hghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p----~ys~--------------~~w~s~asqVkwnyk~p~  172 (1081)
T KOG0309|consen  111 HGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRP----FYST--------------SSWRSAASQVKWNYKDPN  172 (1081)
T ss_pred             ecCccceeccccCCCCCcceeeccccccceeeeccCCCcc----eeee--------------ecccccCceeeecccCcc
Confidence            3599999999999999989999999999999999875432    2211              22233566789987 555


Q ss_pred             EEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCcee-EEEeccCCCe
Q 001295          426 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ-YIFEGHEAPV  504 (1106)
Q Consensus       426 ~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~h~~~v  504 (1106)
                      .|| .+..+.|++||...|...  +..+++|...|+.++|..--.. .+.+++.|++|+.||....... ........+|
T Consensus       173 vla-sshg~~i~vwd~r~gs~p--l~s~K~~vs~vn~~~fnr~~~s-~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~pi  248 (1081)
T KOG0309|consen  173 VLA-SSHGNDIFVWDLRKGSTP--LCSLKGHVSSVNSIDFNRFKYS-EIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPI  248 (1081)
T ss_pred             hhh-hccCCceEEEeccCCCcc--eEEecccceeeehHHHhhhhhh-hhcccCCCCceeeecccccccccceeccccCcc
Confidence            555 445677999999987643  3468889999999999765333 5889999999999997743221 1122244566


Q ss_pred             EEEeccccCCceEEEEEecCCeEEEEeCCC----------CCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEE
Q 001295          505 YSVCPHHKENIQFIFSTALDGKIKAWLYDN----------LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF  574 (1106)
Q Consensus       505 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~  574 (1106)
                      +--++.|-.+|.++.---.+..+.+++-++          ...+..+.+|...|....|-..+..           .-.+
T Consensus       249 w~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~-----------~~d~  317 (1081)
T KOG0309|consen  249 WRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKEC-----------DGDY  317 (1081)
T ss_pred             eeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccc-----------cCCC
Confidence            666666666665444333344555544332          2345567777776666555433320           0112


Q ss_pred             cCCCCEEEEEECCCeEEEEECCC
Q 001295          575 DTTKNRFLAAGDDFSIKFWDMDS  597 (1106)
Q Consensus       575 ~~~~~~l~~~~~d~~i~iwd~~~  597 (1106)
                      ...+-+|++-+.|.++++|-+.+
T Consensus       318 d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  318 DSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             CccceeEEEeecCCceEeeeccH
Confidence            22234689999999999998754

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.65  E-value=3.7e-06  Score=81.35  Aligned_cols=188  Identities=9%  Similarity=-0.020  Sum_probs=127.1

Q ss_pred             eCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecc-e-EEE-EecCcccCeeEEEEecC
Q 001295          829 SGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-E-VKS-KLKGHSKRITGLAFSHA  905 (1106)
Q Consensus       829 sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~-~-~~~-~l~~h~~~V~~l~~s~d  905 (1106)
                      .|.++++++++.+.......-..-.+.++++++ |++++++.++...|..|.+... + ... ....-++.=.+..|+..
T Consensus       136 ndht~k~~~~~~~s~~~~~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~  214 (344)
T KOG4532|consen  136 NDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEN  214 (344)
T ss_pred             CCcceeEEEEecCcccceeeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccC
Confidence            378888888875544333221222388999999 9999999999999999998753 2 222 23334455578899999


Q ss_pred             CCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCc--EEEE-EeCCeEEEEecCCceEeeecc
Q 001295          906 LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI--HFLV-VHETQLAIFETTKLECVKQWV  982 (1106)
Q Consensus       906 ~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~--~l~~-~~d~~v~i~d~~~~~~~~~~~  982 (1106)
                      ...+|++..||++.|||++.........-   .......++++.+.|++.|-  +|.. -.-+.+.+.|++++.....+.
T Consensus       215 ~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s---strp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~  291 (344)
T KOG4532|consen  215 DLQFAVVFQDGTCAIYDVRNMATPMAEIS---STRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIV  291 (344)
T ss_pred             cceEEEEecCCcEEEEEecccccchhhhc---ccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEe
Confidence            99999999999999999987443222111   22222447999999998653  2333 356789999999987555443


Q ss_pred             cC-----CCC-CCeeEEEECCCCCEEEEEEcCCeEEEEEcCCcee
Q 001295          983 PR-----ESS-APITHATFSCDSQLVYACFLDATVCVFSAANLKL 1021 (1106)
Q Consensus       983 ~~-----~h~-~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~ 1021 (1106)
                      ..     .|. ..|..-.|+.++..+.+.+++. +.=|++.+...
T Consensus       292 i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~-~ae~ni~srsR  335 (344)
T KOG4532|consen  292 IPDDVERKHNTQHIFGTNFNNENESNDVKNELQ-GAEYNILSRSR  335 (344)
T ss_pred             cCccccccccccccccccccCCCcccccccchh-hheeeccccce
Confidence            21     232 3488888888888777776553 45567665443

>KOG0396 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.61  E-value=3e-07  Score=93.24  Aligned_cols=160  Identities=12%  Similarity=0.133  Sum_probs=116.6

Q ss_pred             hHHHHHHHHHHHhHhcHHHHHHHHHHhhCCCc--------cHHHHHHHHhcCCHHHHHHHhcccccccCccccchhhhHH
Q 001295            5 SRELVFLILQFLDEEKFKETVHKLEQESGFFF--------NMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEI   76 (1106)
Q Consensus         5 ~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~~--------~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i   76 (1106)
                      +.-+.|+|..||..+||.++|..|-++|.+.-        ++..++++|++|+...|+.-.+.....-.. ....+-|.+
T Consensus       115 r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~LkK-~~S~lEf~l  193 (389)
T KOG0396|consen  115 RNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELKK-EESSLEFQL  193 (389)
T ss_pred             HHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHh-ccchhhhHH
Confidence            45578999999999999999999999999862        377889999999999888776544211111 122388999


Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccccccchhhccCCC-chHHHHHHHH--HHHhhhcc
Q 001295           77 RKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD-TKSARSIMLV--ELKKLIEA  153 (1106)
Q Consensus        77 ~~q~~lEll~~~~~~~A~~~l~~~l~~l~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~-~~~~r~~l~~--~l~~~~~~  153 (1106)
                      +.|+|+||+..+++.+|+.+.++.|.|....+.++++....++.++.......   |.+ -...|=.-++  .++.+..-
T Consensus       194 RlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t~~sk---y~~l~~~~rw~~l~~lF~s~a~~l  270 (389)
T KOG0396|consen  194 RLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYTSSSK---YLNLLTADRWSVLADLFLSEALKL  270 (389)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccccCccc---ccCcccHHHHHHHHHHhhHHHHHH
Confidence            99999999999999999999999999998889999999999998865443332   223 2334445444  34544443


Q ss_pred             CCCCcCcCCchhhHhh
Q 001295          154 NPLFRDKLQFPNLKNS  169 (1106)
Q Consensus       154 ~~~~~~~~rl~~l~~q  169 (1106)
                      .-+.. +.+|..+++-
T Consensus       271 ~~i~~-~~~L~~~l~~  285 (389)
T KOG0396|consen  271 FGIPI-NPALTIYLQA  285 (389)
T ss_pred             hCCCC-CcHHHHHHHh
Confidence            22222 2256666553

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.59  E-value=1.1e-06  Score=86.44  Aligned_cols=184  Identities=15%  Similarity=0.250  Sum_probs=115.3

Q ss_pred             ccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCc-----eeEEEeccCC------------CeEEEeccccCCceEE
Q 001295          456 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-----KQYIFEGHEA------------PVYSVCPHHKENIQFI  518 (1106)
Q Consensus       456 h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~h~~------------~v~~~~~~~~~~~~~l  518 (1106)
                      ....|+++.|...|.  ++++|...|.|.++.-....     ....|++|..            .|..+.|........+
T Consensus        25 ead~ItaVefd~tg~--YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hF  102 (460)
T COG5170          25 EADKITAVEFDETGL--YLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHF  102 (460)
T ss_pred             ccceeeEEEeccccc--eEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence            345799999998888  89999999999999754322     2234566643            4677777666666778


Q ss_pred             EEEecCCeEEEEeCCCCCceeEee--------C-CCCeeEE-------------EEEecCCCeEEEeeeccceeEEEEcC
Q 001295          519 FSTALDGKIKAWLYDNLGSRVDYE--------A-PGRWCTT-------------MAYSADGTRTYQGFRKRSLGVVQFDT  576 (1106)
Q Consensus       519 ~s~~~dg~i~iwd~~~~~~~~~~~--------~-~~~~v~~-------------~~~s~~~~~~~~~~~~~~i~~~~~~~  576 (1106)
                      +..+.|.+|++|.+..........        . .++++++             ........+++...+.-.+.++.++.
T Consensus       103 LlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns  182 (460)
T COG5170         103 LLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS  182 (460)
T ss_pred             EEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC
Confidence            888899999999886542211000        0 0011110             00111112444444555788899999


Q ss_pred             CCCEEEEEECCCeEEEEECCCcc---eeEEEccCC---CCCCcCeEEEccC-CCEEEEEeCCCcEEEEEccCC
Q 001295          577 TKNRFLAAGDDFSIKFWDMDSVQ---LLTSIDADG---GLPASPRIRFNKD-GCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       577 ~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~---~~~~v~~v~~s~~-~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                      +...++++. |=.|.+|++.-..   .+..++.+.   -+.-|++..|+|. ...+.-.+..|.|++-|++..
T Consensus       183 D~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~  254 (460)
T COG5170         183 DKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQS  254 (460)
T ss_pred             chheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhh
Confidence            988777654 6689999976422   122222221   1234678889994 455666677899999988744

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.58  E-value=0.00019  Score=69.70  Aligned_cols=146  Identities=10%  Similarity=0.042  Sum_probs=96.1

Q ss_pred             EEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEee
Q 001295          463 IAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE  542 (1106)
Q Consensus       463 ~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  542 (1106)
                      +...+|.+. +++.|+..+.+.--|..+|+.+..-. -...+.+-+.. -+  ++++.|+..|.+++.+..++++...+.
T Consensus        16 LVV~~dskT-~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vg--dfVV~GCy~g~lYfl~~~tGs~~w~f~   90 (354)
T KOG4649|consen   16 LVVCNDSKT-LVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VG--DFVVLGCYSGGLYFLCVKTGSQIWNFV   90 (354)
T ss_pred             EEEecCCce-EEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-EC--CEEEEEEccCcEEEEEecchhheeeee
Confidence            344456655 78889999999999999998775432 22344333322 12  579999999999999999887776554


Q ss_pred             CCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEcc-C
Q 001295          543 APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-D  621 (1106)
Q Consensus       543 ~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~  621 (1106)
                      ..+.-                     -......+++..+.+|+.|+..+..|..+..++...+..+.  ...+-+..| +
T Consensus        91 ~~~~v---------------------k~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~--~f~sP~i~~g~  147 (354)
T KOG4649|consen   91 ILETV---------------------KVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGG--TFVSPVIAPGD  147 (354)
T ss_pred             ehhhh---------------------ccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCc--eeccceecCCC
Confidence            33221                     11123456667899999999999999999999988776554  233445556 4


Q ss_pred             CCEEEEEeCCCcEEEE
Q 001295          622 GCLLAVSTNDNGIKIL  637 (1106)
Q Consensus       622 ~~~l~~~~~dg~i~iw  637 (1106)
                      +.+ ..+...|.+.--
T Consensus       148 ~sl-y~a~t~G~vlav  162 (354)
T KOG4649|consen  148 GSL-YAAITAGAVLAV  162 (354)
T ss_pred             ceE-EEEeccceEEEE
Confidence            443 334444554433

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.58  E-value=3.8e-05  Score=80.68  Aligned_cols=218  Identities=14%  Similarity=0.077  Sum_probs=136.9

Q ss_pred             eEEEEec-CCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEec
Q 001295          814 PCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK  891 (1106)
Q Consensus       814 ~~l~~s~-~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~  891 (1106)
                      .+++|.+ ++.++++-. .+.|..|+..++.... +....  ...+++...++.++++ .. +.+.++|..+++......
T Consensus         3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v~-~~-~~~~~~d~~~g~~~~~~~   77 (246)
T PF08450_consen    3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYVA-DS-GGIAVVDPDTGKVTVLAD   77 (246)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEEE-ET-TCEEEEETTTTEEEEEEE
T ss_pred             cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEEE-Ec-CceEEEecCCCcEEEEee
Confidence            3678888 555555544 7899999998876543 22122  7788888326665554 43 456666988876443332


Q ss_pred             C-----cccCeeEEEEecCCCEEEEEcCC--------CcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcE
Q 001295          892 G-----HSKRITGLAFSHALNVLVSSGAD--------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH  958 (1106)
Q Consensus       892 ~-----h~~~V~~l~~s~d~~~l~s~s~D--------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~  958 (1106)
                      .     .....+.+++.++|++.++....        |.|..++.. ++.  .......       .....++|+||++.
T Consensus        78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~--~~~~~~~-------~~pNGi~~s~dg~~  147 (246)
T PF08450_consen   78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV--TVVADGL-------GFPNGIAFSPDGKT  147 (246)
T ss_dssp             EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE--EEEEEEE-------SSEEEEEEETTSSE
T ss_pred             ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeE--EEEecCc-------ccccceEECCcchh
Confidence            2     34668899999999988876544        446666665 221  1111111       13478999999998


Q ss_pred             EEEE--eCCeEEEEecCCceE----eeec-ccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCccc
Q 001295          959 FLVV--HETQLAIFETTKLEC----VKQW-VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYL 1031 (1106)
Q Consensus       959 l~~~--~d~~v~i~d~~~~~~----~~~~-~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~ 1031 (1106)
                      |.++  ..+.|..|++.....    ...+ .........-.+++..+|++.++....+.|.++|.+ |+++..+.    +
T Consensus       148 lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~----~  222 (246)
T PF08450_consen  148 LYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIE----L  222 (246)
T ss_dssp             EEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-----
T ss_pred             eeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEc----C
Confidence            8763  667899888853211    1222 111112347889999999988888889999999977 99888887    4


Q ss_pred             CCCCCCCCccceEEEEeCCCCCEEEE
Q 001295         1032 PAGVSSSNVHPLVIAAHPQEPNEFAL 1057 (1106)
Q Consensus      1032 ~~~~~~~~v~~~~~~~~~~d~~~l~t 1057 (1106)
                      | .     -.+..++|...|.+.|+.
T Consensus       223 p-~-----~~~t~~~fgg~~~~~L~v  242 (246)
T PF08450_consen  223 P-V-----PRPTNCAFGGPDGKTLYV  242 (246)
T ss_dssp             S-S-----SSEEEEEEESTTSSEEEE
T ss_pred             C-C-----CCEEEEEEECCCCCEEEE
Confidence            4 1     135589996435555443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.56  E-value=7.2e-07  Score=85.80  Aligned_cols=250  Identities=13%  Similarity=0.159  Sum_probs=140.8

Q ss_pred             cEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeC
Q 001295          353 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS  432 (1106)
Q Consensus       353 v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~  432 (1106)
                      |+.+.|+-+-  .|+++..++.+.....-++.+..     .|+-.....+  ...+..|+++-.+-+.+--++.+++++.
T Consensus        39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~-----~~~rt~~i~~--~~~~a~~sep~p~~~~s~~~t~V~~~~~  109 (319)
T KOG4714|consen   39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCIS-----LWERDDGIDP--FKVLAKNSEIDPNDACTMTDNRVCIGYA  109 (319)
T ss_pred             EEEeechhhh--eeecccchhheeeeccceEEEec-----hhhcccCcCc--eeeeeccCCCCCcccccccCCceEecCC
Confidence            6666666654  58888888877777665443332     1211111111  1123344444444444456778999999


Q ss_pred             CCeEEEEEccCCceeeeeeeec-cccCCeeEEEEcCCCCceEEEEec-----CCCcEEEEeCCCCceeEEEeccCCCeEE
Q 001295          433 RHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCG-----DDKTIKVWDATNGAKQYIFEGHEAPVYS  506 (1106)
Q Consensus       433 d~~v~iwd~~~~~~~~~~~~l~-~h~~~V~~~~~s~d~~~~~l~s~~-----~d~~i~iwd~~~~~~~~~~~~h~~~v~~  506 (1106)
                      ||.+.+.+.+.-  .+...... .|.+ -.+.+....+.  .+.+++     .-+..++|+++-.+.+..-......|.+
T Consensus       110 dg~~~v~s~~~~--~~~~~~i~~~~~~-~as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~  184 (319)
T KOG4714|consen  110 DGSLAVFSTDKD--LALMSRIPSIHSG-SASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTA  184 (319)
T ss_pred             CceEEEEechHH--Hhhhhhccccccc-ccccceeeccc--EEecCCcceEeeccceeeecccccccccccccccccchh
Confidence            999999998752  21111111 1221 12233333444  333332     1234556665533322211112234899


Q ss_pred             EeccccCCceEEEEEecCCeEEEEeCCCCCcee-EeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEE
Q 001295          507 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG  585 (1106)
Q Consensus       507 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  585 (1106)
                      +|-+|... +++++|+.||.+-+||++....+. .+..|...+..+.|+|...                    ..|++++
T Consensus       185 l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p--------------------~~Lft~s  243 (319)
T KOG4714|consen  185 LCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNP--------------------EHLFTCS  243 (319)
T ss_pred             hhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCc--------------------hheeEec
Confidence            99888765 688999999999999999864433 4556666677777666432                    4699999


Q ss_pred             CCCeEEEEECCCcceeEEEc-cCCC-----CCCcCe---------------EEEccCCCEEEEEeCCCcEEEEE
Q 001295          586 DDFSIKFWDMDSVQLLTSID-ADGG-----LPASPR---------------IRFNKDGCLLAVSTNDNGIKILA  638 (1106)
Q Consensus       586 ~d~~i~iwd~~~~~~~~~~~-~~~~-----~~~v~~---------------v~~s~~~~~l~~~~~dg~i~iwd  638 (1106)
                      +||.+..||..+ +.+..-. ....     ...+.+               -.|.--|..|++|++-+.|++++
T Consensus       244 edGslw~wdas~-~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  244 EDGSLWHWDAST-TFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             CCCcEEEEcCCC-ceEEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence            999999999864 2222100 0000     011111               12333577888888888888764

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.56  E-value=2.9e-07  Score=92.05  Aligned_cols=167  Identities=14%  Similarity=0.084  Sum_probs=123.8

Q ss_pred             EEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeCC
Q 001295          354 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR  433 (1106)
Q Consensus       354 ~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d  433 (1106)
                      +.++||-+-.-.-++.+.+-.|-+-|+++|-...                    +. ..+.|.++.|...+.++..|..+
T Consensus       215 ~~CawSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f~-sksDVfAlQf~~s~nLv~~GcRn  273 (425)
T KOG2695|consen  215 WSCAWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------FQ-SKSDVFALQFAGSDNLVFNGCRN  273 (425)
T ss_pred             hhhhhhhccceeeecccccceeEEEEeecccccc--------------------cc-cchhHHHHHhcccCCeeEecccC
Confidence            3346664322112333446778899999886533                    22 46689999999999999999999


Q ss_pred             CeEEEEEccCCce--eeeeeeeccccCCeeEEEEcC-CCCceEEEEecCCCcEEEEeCCCCce---eEEEeccCCCeEEE
Q 001295          434 HIVQIYSYHGGDE--VRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAK---QYIFEGHEAPVYSV  507 (1106)
Q Consensus       434 ~~v~iwd~~~~~~--~~~~~~l~~h~~~V~~~~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~h~~~v~~~  507 (1106)
                      |.|...|++.+..  ..+...+ -|...|+++..-. +++  +|++.+.+|+|++||.+--++   ++++.||...-.-+
T Consensus       274 geI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l  350 (425)
T KOG2695|consen  274 GEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYL  350 (425)
T ss_pred             CcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeeccccccccc
Confidence            9999999986411  1111123 4889999998877 555  789999999999999987666   89999998776666


Q ss_pred             eccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCC
Q 001295          508 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP  544 (1106)
Q Consensus       508 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  544 (1106)
                      -++.++....+++++.|...|+|.++.+..+.+++..
T Consensus       351 ~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~  387 (425)
T KOG2695|consen  351 PAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP  387 (425)
T ss_pred             ccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence            6666666678999999999999999987777665544

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.54  E-value=2.3e-06  Score=88.87  Aligned_cols=299  Identities=15%  Similarity=0.150  Sum_probs=192.3

Q ss_pred             cccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecC
Q 001295          742 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  821 (1106)
Q Consensus       742 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~  821 (1106)
                      |...|+.+..+ ..+++++++-||.++.|.-..-                    .|........  .|-..|.+++.+.+
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~i--------------------sGvEfVKhFr--aHL~~I~sl~~S~d   64 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRI--------------------SGVEFVKHFR--AHLGVILSLAVSYD   64 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCc--------------------cceeehhhhH--HHHHHHHhhhcccc
Confidence            66666665544 4457899999999998853210                    1111111111  26777889999999


Q ss_pred             CCEEEEEe--CCeEEEEEcCCCceeeeecC--CCCCeeEEEEecCCC--ceEEEeeCCCcEEEEEeecce--EEEEecCc
Q 001295          822 DSYVMSAS--GGKISLFNMMTFKTMATFMP--PPPAATFLAFHPQDN--NIIAIGMDDSSIQIYNVRVDE--VKSKLKGH  893 (1106)
Q Consensus       822 ~~~l~~~s--dg~i~vwd~~~~~~~~~~~~--~~~~v~~l~~s~~d~--~~la~g~~dg~v~iwd~~~~~--~~~~l~~h  893 (1106)
                      +.++.+.+  |..++++|+.+...+.-++.  ..+.+ ++..++.|.  .+-++...+|.+.|+|-....  ....-.-|
T Consensus        65 g~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH  143 (558)
T KOG0882|consen   65 GWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLH  143 (558)
T ss_pred             ceeEeeccCcccceeEEEeeccchhhhcccccCCCce-EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccc
Confidence            99999976  68899999987666533321  22222 222333111  233344577899999976533  23333459


Q ss_pred             ccCeeEEEEecCCCEEEEEcCCCcEEEEeCCC-cccccce------eecccCCCCCCCCCCceEEEcCCCcEEEE-EeCC
Q 001295          894 SKRITGLAFSHALNVLVSSGADSQLCVWSSDG-WEKQKNR------FLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHET  965 (1106)
Q Consensus       894 ~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~-~~~~~~~------~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~  965 (1106)
                      ..+|..+-+.+-+...+|....|.|.-|..+. .+.....      .....-+.........++.|+|+|..+++ +.|.
T Consensus       144 ~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~Dr  223 (558)
T KOG0882|consen  144 FSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDR  223 (558)
T ss_pred             cCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCccc
Confidence            99999999999999999999999999999873 1111110      01111122233357789999999999999 7999


Q ss_pred             eEEEEecCCceEeeecccC------------------------------CC-CCCeeEEEECCCCCEEEEEEcCCeEEEE
Q 001295          966 QLAIFETTKLECVKQWVPR------------------------------ES-SAPITHATFSCDSQLVYACFLDATVCVF 1014 (1106)
Q Consensus       966 ~v~i~d~~~~~~~~~~~~~------------------------------~h-~~~v~~l~~s~d~~~l~t~s~Dg~i~vw 1014 (1106)
                      .|++++..+++.++.+...                              .| ...-+.+.|...|.+|+.|+-=| |+|.
T Consensus       224 kVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvi  302 (558)
T KOG0882|consen  224 KVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVI  302 (558)
T ss_pred             EEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEE
Confidence            9999999999876554311                              12 23346778899999999887555 8999


Q ss_pred             EcCCceeEEeeCCCc---------c-------cCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEE
Q 001295         1015 SAANLKLRCRINPSA---------Y-------LPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1067 (1106)
Q Consensus      1015 d~~~~~~~~~~~~~~---------~-------~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW 1067 (1106)
                      ++.++...+.+....         +       .+.-...+...| .+.+.+ |+.+++++-..+.++++
T Consensus       303 n~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np-~~~~~~-dpt~~c~a~kk~rfylf  369 (558)
T KOG0882|consen  303 NLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNP-LLEFQK-DPTIVCTAFKKNRFYLF  369 (558)
T ss_pred             EeecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCc-ccccCC-CCeEEEeeeecceEEEE
Confidence            999988766543110         0       000000111122 234555 67788888888888888

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=7.8e-07  Score=92.19  Aligned_cols=213  Identities=13%  Similarity=0.082  Sum_probs=154.8

Q ss_pred             CCCCeeEEEEecCCCceEEEeeCCCcEEEEEeec---ceEEEEecCcccCeeEEEEecCCCEEEEEcC-CCcEEEEeCCC
Q 001295          850 PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---DEVKSKLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDG  925 (1106)
Q Consensus       850 ~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~---~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-Dg~i~vwd~~~  925 (1106)
                      |...|+.+..+.  .+++.+++.||.++.|.-..   -+.+..+..|-..|.+++.+.||.++.|.+. |..++++|+.+
T Consensus         8 hrd~i~hv~~tk--a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn   85 (558)
T KOG0882|consen    8 HRDVITHVFPTK--AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN   85 (558)
T ss_pred             ccceeeeEeeeh--hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence            677787777664  67999999999999997543   2455667889999999999999999999887 99999999998


Q ss_pred             cccccceeecccCCCCCCCCCCceEEEcCCC--cEEEE--EeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCE
Q 001295          926 WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ--IHFLV--VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQL 1001 (1106)
Q Consensus       926 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg--~~l~~--~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~ 1001 (1106)
                      ........+..+.+       -..+..++..  ..+++  ..++.+.++|-...-|......+-|..+|.++.+.+-+..
T Consensus        86 ~DminmiKL~~lPg-------~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds  158 (558)
T KOG0882|consen   86 FDMINMIKLVDLPG-------FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS  158 (558)
T ss_pred             cchhhhcccccCCC-------ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc
Confidence            66543322222222       1223333332  13444  3778999999887776665666679999999999999999


Q ss_pred             EEEEEcCCeEEEEEcCC------ceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCC
Q 001295         1002 VYACFLDATVCVFSAAN------LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus      1002 l~t~s~Dg~i~vwd~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
                      +++....|.|.-|..+.      .++...++....+-.- -...-.+.++.|+| ++..+.+-+.|..|++++..+|+
T Consensus       159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f-~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGk  234 (558)
T KOG0882|consen  159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGF-PKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGK  234 (558)
T ss_pred             eeeccccceeEeecCCCcccCccccccccccccchhhcc-cccccCccceEEcc-ccCcccccCcccEEEEEEeccch
Confidence            99998899999999873      2222222211111111 01113456899999 79999999999999999999998

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.51  E-value=1.3e-06  Score=84.17  Aligned_cols=198  Identities=15%  Similarity=0.126  Sum_probs=120.4

Q ss_pred             eeEEEEecCCCceEEEeeCCCcEEEEEeecceEE------------EEecCcccCeeEEEEecCCCEEEEEcCCCcEEEE
Q 001295          854 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK------------SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW  921 (1106)
Q Consensus       854 v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~------------~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vw  921 (1106)
                      ++.+.++.  ...|+++..++.+.......+.+.            ..+..|+.+-.+-+.+--+..++++..||.+.+.
T Consensus        39 ~~~~~~v~--~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~  116 (319)
T KOG4714|consen   39 LSKVSLSA--EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVF  116 (319)
T ss_pred             EEEeechh--hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEE
Confidence            66666663  456777777777666655444333            2233343333333333446789999999999999


Q ss_pred             eCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEe------CCeEEEEecCCceEeeecccCCCCCCeeEEEE
Q 001295          922 SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH------ETQLAIFETTKLECVKQWVPRESSAPITHATF  995 (1106)
Q Consensus       922 d~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~------d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~  995 (1106)
                      +.+.-.....+   ....+.    ...+.++...+..+.++.      -+..++|+++-.+....-.  .....|++++-
T Consensus       117 s~~~~~~~~~~---i~~~~~----~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~--~~~~~v~~l~~  187 (319)
T KOG4714|consen  117 STDKDLALMSR---IPSIHS----GSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK--KALDAVTALCS  187 (319)
T ss_pred             echHHHhhhhh---cccccc----cccccceeecccEEecCCcceEeeccceeeecccccccccccc--cccccchhhhC
Confidence            98762211111   111111    122334444555555532      2445566654333221111  11345999999


Q ss_pred             CCCCCE-EEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecC
Q 001295          996 SCDSQL-VYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1071 (1106)
Q Consensus       996 s~d~~~-l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~ 1071 (1106)
                      .|..+. +++|++||.+-+||.........+    +.. +  ...++  .+.|+|.++..|++++.||.+..||-++
T Consensus       188 hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~----l~a-h--k~~i~--eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  188 HPAQQHLVCCGTDDGIVGLWDARNVAMPVSL----LKA-H--KAEIW--EVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             CcccccEEEEecCCCeEEEEEcccccchHHH----HHH-h--hhhhh--heeccCCCchheeEecCCCcEEEEcCCC
Confidence            996654 678889999999999887433222    222 2  34477  8999999999999999999999999875

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.50  E-value=3.6e-07  Score=63.74  Aligned_cols=39  Identities=31%  Similarity=0.555  Sum_probs=37.2

Q ss_pred             ceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEe
Q 001295          884 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS  922 (1106)
Q Consensus       884 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd  922 (1106)
                      |+++.++.+|.+.|++|+|+|++.+|++++.|++|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            468899999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.49  E-value=0.00027  Score=74.24  Aligned_cols=224  Identities=20%  Similarity=0.225  Sum_probs=140.1

Q ss_pred             EEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEc-cCCCEEEEEeC
Q 001295          354 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS-PDGSLFGVAYS  432 (1106)
Q Consensus       354 ~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s-pdg~~las~~~  432 (1106)
                      .+++|.+....|+++....+.|..|+..+++....                    ...  ....+++. ++++++ .+..
T Consensus         3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~--------------------~~~--~~~G~~~~~~~g~l~-v~~~   59 (246)
T PF08450_consen    3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVI--------------------DLP--GPNGMAFDRPDGRLY-VADS   59 (246)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE--------------------ESS--SEEEEEEECTTSEEE-EEET
T ss_pred             cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEE--------------------ecC--CCceEEEEccCCEEE-EEEc
Confidence            36789984444788877789999999988765431                    111  16667777 665544 4555


Q ss_pred             CCeEEEEEccCCceeeeeeeec--c-ccCCeeEEEEcCCCCceEEEEecCC--------CcEEEEeCCCCceeEEEeccC
Q 001295          433 RHIVQIYSYHGGDEVRQHLEID--A-HVGGVNDIAFSHPNKQLCVITCGDD--------KTIKVWDATNGAKQYIFEGHE  501 (1106)
Q Consensus       433 d~~v~iwd~~~~~~~~~~~~l~--~-h~~~V~~~~~s~d~~~~~l~s~~~d--------~~i~iwd~~~~~~~~~~~~h~  501 (1106)
                      ++ +.++|..+++.. .+....  . .....+.+++.++|.  +.++....        +.|..++.. ++...... .-
T Consensus        60 ~~-~~~~d~~~g~~~-~~~~~~~~~~~~~~~ND~~vd~~G~--ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~  133 (246)
T PF08450_consen   60 GG-IAVVDPDTGKVT-VLADLPDGGVPFNRPNDVAVDPDGN--LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GL  133 (246)
T ss_dssp             TC-EEEEETTTTEEE-EEEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EE
T ss_pred             Cc-eEEEecCCCcEE-EEeeccCCCcccCCCceEEEcCCCC--EEEEecCCCccccccccceEEECCC-CeEEEEec-Cc
Confidence            44 566699888643 333332  2 345789999999999  56665433        557777766 55433333 45


Q ss_pred             CCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCc-ee---Ee-eCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcC
Q 001295          502 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS-RV---DY-EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT  576 (1106)
Q Consensus       502 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~---~~-~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~  576 (1106)
                      ...+.++|+++.. .++++-+..+.|..+++..... ..   .+ ......                   +..-.++++.
T Consensus       134 ~~pNGi~~s~dg~-~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-------------------g~pDG~~vD~  193 (246)
T PF08450_consen  134 GFPNGIAFSPDGK-TLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP-------------------GYPDGLAVDS  193 (246)
T ss_dssp             SSEEEEEEETTSS-EEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS-------------------CEEEEEEEBT
T ss_pred             ccccceEECCcch-heeecccccceeEEEeccccccceeeeeeEEEcCCCC-------------------cCCCcceEcC
Confidence            6678899876542 3445777888899988865433 11   11 111110                   1233456666


Q ss_pred             CCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEc-cCCCEEEEEe
Q 001295          577 TKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVST  629 (1106)
Q Consensus       577 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s-~~~~~l~~~~  629 (1106)
                      +|+..++....+.|.+++.. |+.+..+....  ..+++++|. ++.+.|++.+
T Consensus       194 ~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~--~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  194 DGNLWVADWGGGRIVVFDPD-GKLLREIELPV--PRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             TS-EEEEEETTTEEEEEETT-SCEEEEEE-SS--SSEEEEEEESTTSSEEEEEE
T ss_pred             CCCEEEEEcCCCEEEEECCC-ccEEEEEcCCC--CCEEEEEEECCCCCEEEEEe
Confidence            66677777789999999987 88888887662  368899994 6766666544

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.48  E-value=3e-05  Score=87.15  Aligned_cols=186  Identities=12%  Similarity=0.050  Sum_probs=117.9

Q ss_pred             EEecCCCEEEEEe--CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCC----cEEEEEeecceEEEEe
Q 001295          817 ALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS----SIQIYNVRVDEVKSKL  890 (1106)
Q Consensus       817 ~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg----~v~iwd~~~~~~~~~l  890 (1106)
                      =+++||+.+...+  .+.+.+.|.++.+...++.-.. ....+++++ +++++++.+.+.    ++..-+..+...+..+
T Consensus       199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvf  276 (635)
T PRK02888        199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVF  276 (635)
T ss_pred             ccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEE
Confidence            3456777665555  5778899999877776655332 457789999 888887775322    2222222111111111


Q ss_pred             cCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCccccc-ceeecccCCCCCCCCCCceEEEcCCCcEEEEE--eCCeE
Q 001295          891 KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK-NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQL  967 (1106)
Q Consensus       891 ~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~--~d~~v  967 (1106)
                      .-  ..+  -++.++|++...  .++.|.+.|..+..... .....+..+     .....+.+||||++++++  .+..|
T Consensus       277 ni--~~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVG-----KsPHGV~vSPDGkylyVanklS~tV  345 (635)
T PRK02888        277 NI--ARI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVP-----KNPHGVNTSPDGKYFIANGKLSPTV  345 (635)
T ss_pred             ch--HHH--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECC-----CCccceEECCCCCEEEEeCCCCCcE
Confidence            00  000  133467877665  36779999988710000 112223333     256899999999999994  67899


Q ss_pred             EEEecCCceE------------eeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCC
Q 001295          968 AIFETTKLEC------------VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1018 (1106)
Q Consensus       968 ~i~d~~~~~~------------~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~ 1018 (1106)
                      .|+|+++.+.            +.....   .......+|+++|....|-..|..|..||+.+
T Consensus       346 SVIDv~k~k~~~~~~~~~~~~vvaevev---GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        346 TVIDVRKLDDLFDGKIKPRDAVVAEPEL---GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             EEEEChhhhhhhhccCCccceEEEeecc---CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            9999988653            333332   34456789999999888889999999999986

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.48  E-value=0.00095  Score=79.03  Aligned_cols=275  Identities=13%  Similarity=0.105  Sum_probs=150.6

Q ss_pred             ceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhh
Q 001295          568 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR  647 (1106)
Q Consensus       568 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~  647 (1106)
                      .|..+.|..+++.++.+..+|.|.+-|..+......-..   ...|.+++|+||++.++..+..+++.+-.-. - .++.
T Consensus        70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~v---d~GI~aaswS~Dee~l~liT~~~tll~mT~~-f-~~i~  144 (1265)
T KOG1920|consen   70 EIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNV---DNGISAASWSPDEELLALITGRQTLLFMTKD-F-EPIA  144 (1265)
T ss_pred             ceEEEEEecccceEEEEecCCcEEEEcccccceeeeeec---cCceEEEeecCCCcEEEEEeCCcEEEEEecc-c-cchh
Confidence            566677777777899999999999998877654332222   2358999999999999999998888765321 1 1111


Q ss_pred             hhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCC
Q 001295          648 TFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELS  727 (1106)
Q Consensus       648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~  727 (1106)
                      .-.-+...-.                                                ....+.++....-.-+....+.
T Consensus       145 E~~L~~d~~~------------------------------------------------~sk~v~VGwGrkeTqfrgs~gr  176 (1265)
T KOG1920|consen  145 EKPLDADDER------------------------------------------------KSKFVNVGWGRKETQFRGSEGR  176 (1265)
T ss_pred             cccccccccc------------------------------------------------ccccceecccccceeeecchhh
Confidence            0000000000                                                0000111111100011100000


Q ss_pred             CCccceecc---cCccccccceEEEEEcCCCceEEEee-----cCceEEEeeccccccCCCCccccccCccccCCCCCCc
Q 001295          728 EPNQCRSLR---LPENLRATKISRLIFTNSGNAILALA-----SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIM  799 (1106)
Q Consensus       728 ~~~~~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~  799 (1106)
                      .........   .+.......=+.+.|--||.++++..     ....+++||-..                       .+
T Consensus       177 ~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg-----------------------~L  233 (1265)
T KOG1920|consen  177 QAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDREG-----------------------AL  233 (1265)
T ss_pred             hcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEecccc-----------------------hh
Confidence            000000000   00000223345689999999888743     226788887541                       11


Q ss_pred             cccccCCCCCCCCeeEEEEecCCCEEEEEe----CCeEEEEEcCC---CceeeeecCCCCCeeEEEEecCCCceEEE---
Q 001295          800 MTNDVTDSNPEEAVPCFALSKNDSYVMSAS----GGKISLFNMMT---FKTMATFMPPPPAATFLAFHPQDNNIIAI---  869 (1106)
Q Consensus       800 ~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s----dg~i~vwd~~~---~~~~~~~~~~~~~v~~l~~s~~d~~~la~---  869 (1106)
                      -...   ......-.+++|-|.|..+++-.    |+.|.+|.-+.   +.....+.....++..++|+. ++.+||+   
T Consensus       234 ns~s---e~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns-~sdiLAv~~~  309 (1265)
T KOG1920|consen  234 NSTS---EPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNS-NSDILAVVTS  309 (1265)
T ss_pred             hccc---CcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecC-CCCceeeeec
Confidence            0000   01223345789999999999774    56799998653   222222333344589999999 8999998   


Q ss_pred             eeCCCcEEEEEeecce--EEEEecCcccCeeEEEEecCC-CEEEEEcCCCcEEEEeCC
Q 001295          870 GMDDSSIQIYNVRVDE--VKSKLKGHSKRITGLAFSHAL-NVLVSSGADSQLCVWSSD  924 (1106)
Q Consensus       870 g~~dg~v~iwd~~~~~--~~~~l~~h~~~V~~l~~s~d~-~~l~s~s~Dg~i~vwd~~  924 (1106)
                      ......|++|-+.+..  +...+.-.....  +.|+|-. ..|..-..+|...++++.
T Consensus       310 ~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~~  365 (1265)
T KOG1920|consen  310 NLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDFA  365 (1265)
T ss_pred             ccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEEE
Confidence            5555569999987642  334444333333  7888743 234433466666666653

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.46  E-value=0.00016  Score=75.19  Aligned_cols=205  Identities=17%  Similarity=0.161  Sum_probs=127.6

Q ss_pred             EEEEecCCCEEEEEe---CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEee-cceEEEE-
Q 001295          815 CFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR-VDEVKSK-  889 (1106)
Q Consensus       815 ~l~~s~~~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~-~~~~~~~-  889 (1106)
                      .++++.||+++.+..   .-.|.|.|+...+.+.++....  +..+-=+  .++-+.+-+.||++.-..+. .|+...+ 
T Consensus        99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C~~iyP~--~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~  174 (342)
T PF06433_consen   99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--CWLIYPS--GNRGFSMLCGDGSLLTVTLDADGKEAQKS  174 (342)
T ss_dssp             GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--EEEEEEE--ETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred             ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--EEEEEec--CCCceEEEecCCceEEEEECCCCCEeEee
Confidence            356778888877775   4679999999988888776322  2223222  33456677889999998887 4554422 


Q ss_pred             ---ecCcccCe-eEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCC----CCCCCCCCceEEEcCCCcEEEE
Q 001295          890 ---LKGHSKRI-TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTG----RTPTAQSDTRVQFHQDQIHFLV  961 (1106)
Q Consensus       890 ---l~~h~~~V-~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~s~dg~~l~~  961 (1106)
                         |..-.+++ ..-+++.++..++-.+.+|.|+--|+................    ..-.++.-..+++++....|.+
T Consensus       175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv  254 (342)
T PF06433_consen  175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV  254 (342)
T ss_dssp             EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred             ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence               22222222 233455566666668888888888877654333222222110    0001133456888876655555


Q ss_pred             ----EeCC-------eEEEEecCCceEeeecccCCCCCCeeEEEECCCCC-EEEEEE-cCCeEEEEEcCCceeEEeeC
Q 001295          962 ----VHET-------QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus       962 ----~~d~-------~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~-~l~t~s-~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
                          +.++       .|-+||+.+++.+..+..   ..++.+|.++.|.+ +|++.+ .++.+.|||..+|+++.++.
T Consensus       255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l---~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~  329 (342)
T PF06433_consen  255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL---EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE  329 (342)
T ss_dssp             EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE---EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred             EecCCCCCCccCCceEEEEEECCCCeEEEEEeC---CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence                2222       588999999999999875   34688999999887 555444 57999999999999999887

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10

Probab=98.46  E-value=5.8e-07  Score=85.09  Aligned_cols=132  Identities=20%  Similarity=0.199  Sum_probs=99.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHhcccccccCccccchhhhHHHHHHHHHHHhCCCHHHHHHHHHhhcccccccCHHHHHHHHH
Q 001295           38 MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQ  117 (1106)
Q Consensus        38 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~~~~~A~~~l~~~l~~l~~~~~~~~~~l~~  117 (1106)
                      ...++++|++|+++.|+..++....--. .....+.|.|+.|+|+|||..++..+|+.+.|+.+.|......+.++.+..
T Consensus         5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~-~~~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~~   83 (145)
T PF10607_consen    5 RKKIRQAILNGDIDPAIEWLNENFPELL-KRNSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLMS   83 (145)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHcCHHHH-hcCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            5688999999999999999987731111 112349999999999999999999999999999997765446778888889


Q ss_pred             Hhccccccc--chhhccCCCchHHHHHHHHHHHhhhccCCCCcCcCCchhhHhhhH
Q 001295          118 LLTLENFRE--NEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSSL  171 (1106)
Q Consensus       118 ll~~~~~~~--~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~rl~~l~~qa~  171 (1106)
                      ++...+..+  ...+..+-+. ..|..+.+.+.+.+...-..|..+.|..++.+..
T Consensus        84 lL~~~~~~~~~~s~~~~l~~~-~~~~~la~~~~~~~l~~~~~~~~s~L~~~~~~g~  138 (145)
T PF10607_consen   84 LLAYPDPEEPLPSPYKELLSP-ERREELAEEFNSAILKSYGLPKESPLEVILKAGL  138 (145)
T ss_pred             HHHcCCcccccchHHHHHhCh-HHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHH
Confidence            988876554  2233333333 7788888888877776666666557888877643

RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.46  E-value=2.5e-05  Score=81.93  Aligned_cols=227  Identities=16%  Similarity=0.099  Sum_probs=135.4

Q ss_pred             cCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeee
Q 001295          372 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL  451 (1106)
Q Consensus       372 dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~  451 (1106)
                      +|+|..||..+|+.+-...++                .... ...+. ..+++.++.+++.++.|..||..+|+.+....
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~----------------~~~~-~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~   63 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLG----------------PGIG-GPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFD   63 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECS----------------SSCS-SEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEE
T ss_pred             CCEEEEEECCCCCEEEEEECC----------------CCCC-Cccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEee
Confidence            688999999999888653221                0111 22211 23367777778899999999999998765332


Q ss_pred             eeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEE-eccCCC---eEEEeccccCCceEEEEEecCCeE
Q 001295          452 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAP---VYSVCPHHKENIQFIFSTALDGKI  527 (1106)
Q Consensus       452 ~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~---v~~~~~~~~~~~~~l~s~~~dg~i  527 (1106)
                       +.   +.+.......++   .++.++.++.|+.+|..+|+.+... ......   .........  +..++.+..++.|
T Consensus        64 -~~---~~~~~~~~~~~~---~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~l  134 (238)
T PF13360_consen   64 -LP---GPISGAPVVDGG---RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD--GDRLYVGTSSGKL  134 (238)
T ss_dssp             -CS---SCGGSGEEEETT---EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE--TTEEEEEETCSEE
T ss_pred             -cc---ccccceeeeccc---ccccccceeeeEecccCCcceeeeeccccccccccccccCceEe--cCEEEEEeccCcE
Confidence             22   222221222334   3555557789999999999999884 332111   111111112  3578888889999


Q ss_pred             EEEeCCCCCceeEeeCCCCee-EEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEcc
Q 001295          528 KAWLYDNLGSRVDYEAPGRWC-TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA  606 (1106)
Q Consensus       528 ~iwd~~~~~~~~~~~~~~~~v-~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  606 (1106)
                      ..+|.++++.+.......... ..+....+           ....+.+. ++ .++.+..++.+..+|+.+++.+.... 
T Consensus       135 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~-----------~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-  200 (238)
T PF13360_consen  135 VALDPKTGKLLWKYPVGEPRGSSPISSFSD-----------INGSPVIS-DG-RVYVSSGDGRVVAVDLATGEKLWSKP-  200 (238)
T ss_dssp             EEEETTTTEEEEEEESSTT-SS--EEEETT-----------EEEEEECC-TT-EEEEECCTSSEEEEETTTTEEEEEEC-
T ss_pred             EEEecCCCcEEEEeecCCCCCCcceeeecc-----------cccceEEE-CC-EEEEEcCCCeEEEEECCCCCEEEEec-
Confidence            999999988877766543221 10100000           00111111 23 56777777754444999998664333 


Q ss_pred             CCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCc
Q 001295          607 DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI  643 (1106)
Q Consensus       607 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~  643 (1106)
                      ..   .+.. ....++..|++++.++.+..||+.+++
T Consensus       201 ~~---~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~  233 (238)
T PF13360_consen  201 IS---GIYS-LPSVDGGTLYVTSSDGRLYALDLKTGK  233 (238)
T ss_dssp             SS----ECE-CEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred             CC---CccC-CceeeCCEEEEEeCCCEEEEEECCCCC
Confidence            11   1222 145678888888899999999999984

...

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.45  E-value=6.7e-05  Score=88.30  Aligned_cols=279  Identities=10%  Similarity=0.119  Sum_probs=159.0

Q ss_pred             cccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecC
Q 001295          742 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  821 (1106)
Q Consensus       742 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~  821 (1106)
                      ....|.++.|-.+...++.+...|.|.+-|..+                      ......    ..-...|.+++||||
T Consensus        67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et----------------------~~~eiv----g~vd~GI~aaswS~D  120 (1265)
T KOG1920|consen   67 GDDEIVSVQFLADTNSICVITALGDIILVDPET----------------------LELEIV----GNVDNGISAASWSPD  120 (1265)
T ss_pred             CCcceEEEEEecccceEEEEecCCcEEEEcccc----------------------cceeee----eeccCceEEEeecCC
Confidence            346899999999999999999999988765442                      211110    114678999999999


Q ss_pred             CCEEEEEeCCeEEEEEcCCCceeeeecCC-----CCCeeEEEEecCCCceEEEeeCCCcEEEEEeecce-EEEEecCccc
Q 001295          822 DSYVMSASGGKISLFNMMTFKTMATFMPP-----PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE-VKSKLKGHSK  895 (1106)
Q Consensus       822 ~~~l~~~sdg~i~vwd~~~~~~~~~~~~~-----~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~-~~~~l~~h~~  895 (1106)
                      +++++....+...++...+...+....-+     .+....+-|-. ....+ -| ..|...-.+....+ ......-| +
T Consensus       121 ee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGr-keTqf-rg-s~gr~~~~~~~~~ek~~~~~~~~-~  196 (1265)
T KOG1920|consen  121 EELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGR-KETQF-RG-SEGRQAARQKIEKEKALEQIEQD-D  196 (1265)
T ss_pred             CcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccc-cceee-ec-chhhhcccccccccccccchhhc-c
Confidence            99999888544444444444443322111     11122222221 00000 01 11111111111100 00111112 2


Q ss_pred             CeeEEEEecCCCEEEEE-----cCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE----EeCCe
Q 001295          896 RITGLAFSHALNVLVSS-----GADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV----VHETQ  966 (1106)
Q Consensus       896 ~V~~l~~s~d~~~l~s~-----s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~----~~d~~  966 (1106)
                      .=++|.|--||.++|+.     ...+.|+|||-+ +..      +.....  ....-.+++|-|.|..+++    .+|+.
T Consensus       197 ~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~L------ns~se~--~~~l~~~LsWkPsgs~iA~iq~~~sd~~  267 (1265)
T KOG1920|consen  197 HKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GAL------NSTSEP--VEGLQHSLSWKPSGSLIAAIQCKTSDSD  267 (1265)
T ss_pred             CCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chh------hcccCc--ccccccceeecCCCCeEeeeeecCCCCc
Confidence            23568999999999873     333789999987 322      111111  1124478999999999998    25677


Q ss_pred             EEEEecCCceEeeeccc--CCCCCCeeEEEECCCCCEEEE---EEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCcc
Q 001295          967 LAIFETTKLECVKQWVP--RESSAPITHATFSCDSQLVYA---CFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVH 1041 (1106)
Q Consensus       967 v~i~d~~~~~~~~~~~~--~~h~~~v~~l~~s~d~~~l~t---~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 1041 (1106)
                      |.+|.-+..+. ..+..  .....+|..++|+.++..||+   ......|++|-+.+..-.....  -..+..     . 
T Consensus       268 IvffErNGL~h-g~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~--l~~~~~-----~-  338 (1265)
T KOG1920|consen  268 IVFFERNGLRH-GEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQE--LQFSQK-----A-  338 (1265)
T ss_pred             EEEEecCCccc-cccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEE--Eecccc-----c-
Confidence            99988654332 22211  122344999999999999987   4445569999988776433221  012211     1 


Q ss_pred             ceEEEEeCCCCCEEEEEeCCCcEEEEeec
Q 001295         1042 PLVIAAHPQEPNEFALGLSDGGVHVFEPL 1070 (1106)
Q Consensus      1042 ~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~ 1070 (1106)
                        .+.|+|.....|..-..+|...+.++.
T Consensus       339 --~~~W~p~~~~~L~v~~~sG~~~v~~~~  365 (1265)
T KOG1920|consen  339 --LLMWDPVTEKTLHVLRESGQRLVRDFA  365 (1265)
T ss_pred             --cccccCCCceeEEEEecCCcEEEEEEE
Confidence              267777666666665567766555543

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.41  E-value=2.9e-07  Score=102.75  Aligned_cols=199  Identities=17%  Similarity=0.206  Sum_probs=143.8

Q ss_pred             CceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCC--cE
Q 001295          841 FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS--QL  918 (1106)
Q Consensus       841 ~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg--~i  918 (1106)
                      .+..++|..|....+|++|+. +.++|++|+-.|.|++|++.+|.......+|..+|+-+.-+.||..+.+.+.-.  ..
T Consensus      1091 Fr~w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred             cccchhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence            344566777888899999999 889999999999999999999999999999999999999999998877655433  46


Q ss_pred             EEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeEEEEecCCceEeeecccC--CCCCCeeEEEE
Q 001295          919 CVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPR--ESSAPITHATF  995 (1106)
Q Consensus       919 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v~i~d~~~~~~~~~~~~~--~h~~~v~~l~~  995 (1106)
                      .+|++...-.    ....+       ..-.++.|+....+-+.+ ......+||+.++....++..+  +.+..-.+..|
T Consensus      1170 aLW~~~s~~~----~~Hsf-------~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~F 1238 (1516)
T KOG1832|consen 1170 ALWDASSTGG----PRHSF-------DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHF 1238 (1516)
T ss_pred             HHhccccccC----ccccc-------cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhcccccc
Confidence            7999876211    11111       244788898886655554 4467889999998876664321  12334478899


Q ss_pred             CCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCC
Q 001295          996 SCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus       996 s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
                      ||+.++++   .||  -+||+...+.+.++..-..-.           .=.|+| .|..++.-+     .|||+.+-.
T Consensus      1239 sP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~-----------~G~FHP-~g~eVIINS-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1239 SPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTDYG-----------GGGFHP-SGNEVIINS-----EIWDMRTFK 1294 (1516)
T ss_pred             CCCcceEe---eCc--eeeeeccHHHHhhhhhheecc-----------cccccC-CCceEEeec-----hhhhhHHHH
Confidence            99998877   466  579999888777665211111           234788 467766655     578877654

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.41  E-value=5.6e-06  Score=92.68  Aligned_cols=191  Identities=15%  Similarity=0.150  Sum_probs=134.9

Q ss_pred             CCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCccccc
Q 001295          851 PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK  930 (1106)
Q Consensus       851 ~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~  930 (1106)
                      ...++|++++   +++++.|+.+|.|++++... .. .+...|+..      ..+|.+++||+.||+|.|-.+.+.+...
T Consensus        39 ~D~is~~av~---~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~  107 (846)
T KOG2066|consen   39 NDAISCCAVH---DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT  107 (846)
T ss_pred             hhHHHHHHhh---cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence            3457788885   47999999999999999763 33 444446554      5679999999999999999988755322


Q ss_pred             ceeecccCCCCCCCCCCceEEEcCC-----CcEEEEEeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEE
Q 001295          931 NRFLQIPTGRTPTAQSDTRVQFHQD-----QIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYAC 1005 (1106)
Q Consensus       931 ~~~~~~~~~~~~~~~~i~~~~~s~d-----g~~l~~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~ 1005 (1106)
                      .     ..-+    ..+.+++++||     .+.+++|++..+.++.-.-..-..........++|.++.|  .|.++|=+
T Consensus       108 ~-----~df~----rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWa  176 (846)
T KOG2066|consen  108 Q-----YDFK----RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWA  176 (846)
T ss_pred             e-----EecC----CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEe
Confidence            1     1111    36789999998     5667776554477776443332222222244789999999  57899988


Q ss_pred             EcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecC
Q 001295         1006 FLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1071 (1106)
Q Consensus      1006 s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~ 1071 (1106)
                      +.+| |+|||+.+++.+..+++....+    .....+-.+.|.+  ...|+.| +--+|+|..+..
T Consensus       177 nd~G-v~vyd~~~~~~l~~i~~p~~~~----R~e~fpphl~W~~--~~~LVIG-W~d~v~i~~I~~  234 (846)
T KOG2066|consen  177 NDDG-VKVYDTPTRQRLTNIPPPSQSV----RPELFPPHLHWQD--EDRLVIG-WGDSVKICSIKK  234 (846)
T ss_pred             cCCC-cEEEeccccceeeccCCCCCCC----CcccCCCceEecC--CCeEEEe-cCCeEEEEEEec
Confidence            8666 8999999999998888555333    3335555788986  4566655 667799999883

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.41  E-value=0.00086  Score=65.25  Aligned_cols=143  Identities=11%  Similarity=0.085  Sum_probs=93.4

Q ss_pred             EecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeCCCeEE
Q 001295          358 FHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQ  437 (1106)
Q Consensus       358 ~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~  437 (1106)
                      .-+|.+.+++.|+..+.+.--|..+|+..-+..                 +   ...|.+-+.- -|++++.|...|.+.
T Consensus        18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~i-----------------l---g~RiE~sa~v-vgdfVV~GCy~g~lY   76 (354)
T KOG4649|consen   18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-----------------L---GVRIECSAIV-VGDFVVLGCYSGGLY   76 (354)
T ss_pred             EecCCceEEEEecCCceEEEecCCCCcEEeehh-----------------h---CceeeeeeEE-ECCEEEEEEccCcEE
Confidence            445666689999999999999999988765311                 1   1233332222 477899999999999


Q ss_pred             EEEccCCceeeeeeeeccccCCee-EEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCce
Q 001295          438 IYSYHGGDEVRQHLEIDAHVGGVN-DIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQ  516 (1106)
Q Consensus       438 iwd~~~~~~~~~~~~l~~h~~~V~-~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  516 (1106)
                      +.+.++|+.......+.    .|. .....+++.  ++..|+.|++.+.-|.++..++...+-..+...+-++.+. ++ 
T Consensus        77 fl~~~tGs~~w~f~~~~----~vk~~a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g-~~-  148 (354)
T KOG4649|consen   77 FLCVKTGSQIWNFVILE----TVKVRAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPG-DG-  148 (354)
T ss_pred             EEEecchhheeeeeehh----hhccceEEcCCCc--eEEEecCCCcEEEecccccceEEecccCCceeccceecCC-Cc-
Confidence            99999997765433322    222 223456777  8999999999999999999999886643332222233222 22 


Q ss_pred             EEEEEecCCeEEE
Q 001295          517 FIFSTALDGKIKA  529 (1106)
Q Consensus       517 ~l~s~~~dg~i~i  529 (1106)
                      .|+.+...|.+.-
T Consensus       149 sly~a~t~G~vla  161 (354)
T KOG4649|consen  149 SLYAAITAGAVLA  161 (354)
T ss_pred             eEEEEeccceEEE
Confidence            3444445554443

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.39  E-value=2.1e-05  Score=88.35  Aligned_cols=222  Identities=11%  Similarity=0.033  Sum_probs=139.0

Q ss_pred             cCCCEEEEEe--CCeEEEEEcCCCceeeeecC------C---------CCCee-----EEEEecCCCceEEE-eeCCCcE
Q 001295          820 KNDSYVMSAS--GGKISLFNMMTFKTMATFMP------P---------PPAAT-----FLAFHPQDNNIIAI-GMDDSSI  876 (1106)
Q Consensus       820 ~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~------~---------~~~v~-----~l~~s~~d~~~la~-g~~dg~v  876 (1106)
                      .||+||..-.  +..|...++...++-+.+.-      |         ...|.     .+=+++ ||+.+.. .-..+.+
T Consensus       139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~Plpn-DGk~l~~~~ey~~~v  217 (635)
T PRK02888        139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPN-DGKDLDDPKKYRSLF  217 (635)
T ss_pred             cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCC-CCCEeecccceeEEE
Confidence            4888998887  45666666665554333211      1         11121     233445 5554432 2334577


Q ss_pred             EEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCC---C-cEEEEeCCCcccccceeecccCCCCCCCCCCceEEE
Q 001295          877 QIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD---S-QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF  952 (1106)
Q Consensus       877 ~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D---g-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  952 (1106)
                      .+.|..+.+...++.--. .-..+++++||+++++.+.+   | ++..-+...  ......+...          ..-++
T Consensus       218 SvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e--~d~~vvfni~----------~iea~  284 (635)
T PRK02888        218 TAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAE--RDWVVVFNIA----------RIEEA  284 (635)
T ss_pred             EEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeecccc--CceEEEEchH----------HHHHh
Confidence            788888777766654322 34568899999999888632   2 222222211  1110011000          01134


Q ss_pred             cCCCcEEEEEeCCeEEEEecCC-----ceEeeecccCCCCCCeeEEEECCCCCEEEEEE-cCCeEEEEEcCCcee-----
Q 001295          953 HQDQIHFLVVHETQLAIFETTK-----LECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKL----- 1021 (1106)
Q Consensus       953 s~dg~~l~~~~d~~v~i~d~~~-----~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s-~Dg~i~vwd~~~~~~----- 1021 (1106)
                      .++|++..+ .++.|.+.|..+     ...+..+..   ......+.+||||+++++++ .+.+|.|.|+.+.+.     
T Consensus       285 vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIPV---GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~  360 (635)
T PRK02888        285 VKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVPV---PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK  360 (635)
T ss_pred             hhCCCEEEE-CCCEEEEEECCccccCCcceEEEEEC---CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence            557887665 467899999998     455555543   56788999999999976555 588999999988663     


Q ss_pred             -------EEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecC
Q 001295         1022 -------RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1071 (1106)
Q Consensus      1022 -------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~ 1071 (1106)
                             ..+++    +  |     .-|+..+|.+ +|+...|--.|..|..|++.+
T Consensus       361 ~~~~~~vvaeve----v--G-----lGPLHTaFDg-~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        361 IKPRDAVVAEPE----L--G-----LGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CCccceEEEeec----c--C-----CCcceEEECC-CCCEEEeEeecceeEEEehHH
Confidence                   33333    2  2     4477899988 688899999999999999987

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=4.5e-05  Score=78.51  Aligned_cols=223  Identities=13%  Similarity=0.170  Sum_probs=130.7

Q ss_pred             ccCCCCcCeEEEEEccCCC-EEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEE
Q 001295          407 LVKDPGVSVNRVIWSPDGS-LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV  485 (1106)
Q Consensus       407 ~~~~h~~~V~~l~~spdg~-~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~i  485 (1106)
                      ++.+|...|..++|||..+ +|..++.+.+|+|.|+++...+.   .+..| ..+++++|.-|... ++..|...|.|.|
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv  262 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV  262 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence            6789999999999999766 78889999999999999976655   45566 78999999999876 8899999999999


Q ss_pred             EeCCCCce-eEEEec--cCCCeEEEecccc----CCceEEEEEecCCeEEEEeCCCCCc--eeEeeCC-CCeeEEEEEec
Q 001295          486 WDATNGAK-QYIFEG--HEAPVYSVCPHHK----ENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAP-GRWCTTMAYSA  555 (1106)
Q Consensus       486 wd~~~~~~-~~~~~~--h~~~v~~~~~~~~----~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~-~~~v~~~~~s~  555 (1106)
                      +|++..+- +..+.+  ...+|..++..+.    ..|.+++..+.+  +.+|++.-...  ....... .+.+.++.+.+
T Consensus       263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~  340 (463)
T KOG1645|consen  263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG  340 (463)
T ss_pred             EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence            99985432 233322  2234443332110    112233333322  44555432111  1111111 11222222222


Q ss_pred             CCCeEEE----------------------------------eeeccc---eeEEEEcCCCCEEEE-EECCCeEEEEECCC
Q 001295          556 DGTRTYQ----------------------------------GFRKRS---LGVVQFDTTKNRFLA-AGDDFSIKFWDMDS  597 (1106)
Q Consensus       556 ~~~~~~~----------------------------------~~~~~~---i~~~~~~~~~~~l~~-~~~d~~i~iwd~~~  597 (1106)
                      -.+.++.                                  |.....   -..+.-.++.++++. ++..+.+.+||..+
T Consensus       341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s  420 (463)
T KOG1645|consen  341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS  420 (463)
T ss_pred             ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence            1111110                                  110000   011222334455554 55678999999999


Q ss_pred             cceeEEEccCCCCCCcCeEEEcc-CC-CEEEEEeCCCcEEEEEcc
Q 001295          598 VQLLTSIDADGGLPASPRIRFNK-DG-CLLAVSTNDNGIKILATS  640 (1106)
Q Consensus       598 ~~~~~~~~~~~~~~~v~~v~~s~-~~-~~l~~~~~dg~i~iwd~~  640 (1106)
                      ++.+.++....   +|.+++... ++ .+|++-+ |..++||..+
T Consensus       421 ~evvQ~l~~~e---pv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e  461 (463)
T KOG1645|consen  421 FEVVQTLALSE---PVLDICPNDTNGSSYLALLT-DDRVHIYKNE  461 (463)
T ss_pred             hheeeecccCc---ceeecceeecCCcchhhhee-cceEEEEecC
Confidence            99999987652   466655544 33 4555544 5688888654

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.33  E-value=7.4e-06  Score=92.66  Aligned_cols=181  Identities=15%  Similarity=0.174  Sum_probs=133.5

Q ss_pred             CCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeE
Q 001295          821 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG  899 (1106)
Q Consensus       821 ~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~  899 (1106)
                      ++..++.|+ ...+..+|+.+.+..+......+.|+-+..   +++++.+|...|+|.+-|..+.+.++++.+|++.|.+
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD  222 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD  222 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence            344566665 677888999988887777655555666665   6789999999999999999999999999999999987


Q ss_pred             EEEecCCCEEEEEcC---------CCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCC--CcEEEEEeCCeEE
Q 001295          900 LAFSHALNVLVSSGA---------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD--QIHFLVVHETQLA  968 (1106)
Q Consensus       900 l~~s~d~~~l~s~s~---------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~d--g~~l~~~~d~~v~  968 (1106)
                      +..  .|+.|+++|.         |..|+|||++..+...  ++++..+       ..-+.|.|.  .+..+++..|...
T Consensus       223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~--PI~~~~~-------P~flrf~Psl~t~~~V~S~sGq~q  291 (1118)
T KOG1275|consen  223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS--PIQFPYG-------PQFLRFHPSLTTRLAVTSQSGQFQ  291 (1118)
T ss_pred             eec--cCCeEEEeecccccccccccchhhhhhhhhhhccC--CcccccC-------chhhhhcccccceEEEEeccccee
Confidence            665  5889999875         5678999999854322  3333322       245677775  3444447888888


Q ss_pred             EEecCCce-E-eeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEE
Q 001295          969 IFETTKLE-C-VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1015 (1106)
Q Consensus       969 i~d~~~~~-~-~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd 1015 (1106)
                      +-|..+.. . ........-+..+..+++|+.+..||.|..+|.|.+|.
T Consensus       292 ~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  292 FVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             eccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            88843321 1 11111122255699999999999999999999999997

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.32  E-value=3e-06  Score=85.03  Aligned_cols=153  Identities=14%  Similarity=0.132  Sum_probs=112.9

Q ss_pred             EEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCC
Q 001295          868 AIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD  947 (1106)
Q Consensus       868 a~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i  947 (1106)
                      ++.+.+..|-+-++.+|-. ..|. ..+.|.++.|...+.++..|...|.|.+.|++...+-...+.......    ..|
T Consensus       228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~----Ssv  301 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHD----SSV  301 (425)
T ss_pred             ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcC----cch
Confidence            4455677888889888643 3444 567799999998899999999999999999988643333222222211    366


Q ss_pred             ceEEEcC-CCcEEEE-EeCCeEEEEecCCceE---eeecccCCCCCC--eeEEEECCCCCEEEEEEcCCeEEEEEcCCce
Q 001295          948 TRVQFHQ-DQIHFLV-VHETQLAIFETTKLEC---VKQWVPRESSAP--ITHATFSCDSQLVYACFLDATVCVFSAANLK 1020 (1106)
Q Consensus       948 ~~~~~s~-dg~~l~~-~~d~~v~i~d~~~~~~---~~~~~~~~h~~~--v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~ 1020 (1106)
                      +++..-. ++.+|.+ ..+|+|.+||.+.-++   +.++.  +|...  -.-+.+.+....++++++|...|||.+..|.
T Consensus       302 tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYe--GHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh  379 (425)
T KOG2695|consen  302 TSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYE--GHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH  379 (425)
T ss_pred             hhhhhhccccceEeeccCcCceeEeeehhhhcccceeeee--cccccccccccccccccceEEEccCeeEEEEEecccCc
Confidence            7776655 5666666 6899999999998888   66665  66433  2334456777888999999999999999999


Q ss_pred             eEEeeCCC
Q 001295         1021 LRCRINPS 1028 (1106)
Q Consensus      1021 ~~~~~~~~ 1028 (1106)
                      ++++++..
T Consensus       380 Ll~tipf~  387 (425)
T KOG2695|consen  380 LLCTIPFP  387 (425)
T ss_pred             eeeccCCC
Confidence            99998833

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.27  E-value=2.4e-06  Score=59.50  Aligned_cols=38  Identities=24%  Similarity=0.419  Sum_probs=34.5

Q ss_pred             eEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEE
Q 001295          976 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1015 (1106)
Q Consensus       976 ~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd 1015 (1106)
                      +++..+.  +|..+|++|+|+|++.+|++++.|++|++||
T Consensus         2 ~~~~~~~--~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFR--GHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEE--SSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEc--CCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            4556665  8999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.24  E-value=6.7e-05  Score=84.96  Aligned_cols=205  Identities=15%  Similarity=0.171  Sum_probs=130.7

Q ss_pred             EEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccC-eeEEEEecCCCEEEEEcCCCc-----EEEEeCCCccccc-
Q 001295          858 AFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR-ITGLAFSHALNVLVSSGADSQ-----LCVWSSDGWEKQK-  930 (1106)
Q Consensus       858 ~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~s~d~~~l~s~s~Dg~-----i~vwd~~~~~~~~-  930 (1106)
                      +|++ ++..+|.|+.+|.|.+++ .+.+.+..++++... |+.+-...+..+|++.+.|+.     |+||+++.-+... 
T Consensus        30 c~~s-~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s  107 (933)
T KOG2114|consen   30 CCSS-STGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS  107 (933)
T ss_pred             EEcC-CCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence            4566 778999999999999887 445666888888777 555554445579999888764     8999998754333 


Q ss_pred             ceee---cccCCCCC-CCCCCceEEEcCCCcEEEEE-eCCeEEEEecCCc--eEeeecccCCCCCCeeEEEECCCCCEEE
Q 001295          931 NRFL---QIPTGRTP-TAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKL--ECVKQWVPRESSAPITHATFSCDSQLVY 1003 (1106)
Q Consensus       931 ~~~~---~~~~~~~~-~~~~i~~~~~s~dg~~l~~~-~d~~v~i~d~~~~--~~~~~~~~~~h~~~v~~l~~s~d~~~l~ 1003 (1106)
                      ..++   .......+ .+.++..++.+.+-+.+|+| .+|.|..+.-+-.  +..+.-......++|+.+++..|++.++
T Consensus       108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l  187 (933)
T KOG2114|consen  108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL  187 (933)
T ss_pred             cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence            2233   22221111 23567889999999999997 7888888753221  1112111123378999999999999844


Q ss_pred             EEEcCCeEEEEEcCCcee-EEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCCCcc
Q 001295         1004 ACFLDATVCVFSAANLKL-RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKW 1076 (1106)
Q Consensus      1004 t~s~Dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~~~~ 1076 (1106)
                      .+..-..|.+|.+..... .+.+.        +++....  +.+|++..+. ++.++ +..|.+++.+.-+..|
T Consensus       188 Fv~Tt~~V~~y~l~gr~p~~~~ld--------~~G~~ln--Css~~~~t~q-fIca~-~e~l~fY~sd~~~~cf  249 (933)
T KOG2114|consen  188 FVATTEQVMLYSLSGRTPSLKVLD--------NNGISLN--CSSFSDGTYQ-FICAG-SEFLYFYDSDGRGPCF  249 (933)
T ss_pred             EEEecceeEEEEecCCCcceeeec--------cCCccce--eeecCCCCcc-EEEec-CceEEEEcCCCcceee
Confidence            444567899999884331 22222        2233344  6667763332 44443 5678898887655333

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=0.00014  Score=74.94  Aligned_cols=98  Identities=16%  Similarity=0.168  Sum_probs=80.2

Q ss_pred             EEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCc
Q 001295          436 VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI  515 (1106)
Q Consensus       436 v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~  515 (1106)
                      |++.+..+-+...   -+.+|...|..++|||...- ++..++.+..|+|.|+++..++..+..+ ..+++++|.-+. .
T Consensus       175 v~~l~~~~fkssq---~lp~~g~~IrdlafSp~~~G-Ll~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde-~  248 (463)
T KOG1645|consen  175 VQKLESHDFKSSQ---ILPGEGSFIRDLAFSPFNEG-LLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDE-R  248 (463)
T ss_pred             eEEeccCCcchhh---cccccchhhhhhccCccccc-eeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCC-c
Confidence            5555554443332   46688899999999998875 6888999999999999999999999888 899999997665 5


Q ss_pred             eEEEEEecCCeEEEEeCCCCCcee
Q 001295          516 QFIFSTALDGKIKAWLYDNLGSRV  539 (1106)
Q Consensus       516 ~~l~s~~~dg~i~iwd~~~~~~~~  539 (1106)
                      ++|+.|...|.|.+||++..+...
T Consensus       249 h~IYaGl~nG~VlvyD~R~~~~~~  272 (463)
T KOG1645|consen  249 HVIYAGLQNGMVLVYDMRQPEGPL  272 (463)
T ss_pred             ceeEEeccCceEEEEEccCCCchH
Confidence            899999999999999999765543

>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions

Probab=98.12  E-value=3.7e-06  Score=51.54  Aligned_cols=27  Identities=37%  Similarity=0.551  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHhHhcHHHHHHHHHHhh
Q 001295            6 RELVFLILQFLDEEKFKETVHKLEQES   32 (1106)
Q Consensus         6 ~~~~~li~q~L~~~g~~~s~~~L~~Es   32 (1106)
                      +++.+||++||.+.||.+||.+|++||
T Consensus         1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea   27 (27)
T PF08513_consen    1 EELNQLIYDYLVENGYKETAKAFAKEA   27 (27)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence            589999999999999999999999997

The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.09  E-value=0.00022  Score=80.40  Aligned_cols=185  Identities=13%  Similarity=0.139  Sum_probs=123.5

Q ss_pred             eEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEE
Q 001295          746 ISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYV  825 (1106)
Q Consensus       746 i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l  825 (1106)
                      +.+.++  .++.++.|+.+|.+++++.+..                       .... +   .|...      ..+|.++
T Consensus        42 is~~av--~~~~~~~GtH~g~v~~~~~~~~-----------------------~~~~-~---~~s~~------~~~Gey~   86 (846)
T KOG2066|consen   42 ISCCAV--HDKFFALGTHRGAVYLTTCQGN-----------------------PKTN-F---DHSSS------ILEGEYV   86 (846)
T ss_pred             HHHHHh--hcceeeeccccceEEEEecCCc-----------------------cccc-c---ccccc------ccCCceE
Confidence            344444  3456888999999999875421                       0000 0   02221      5689999


Q ss_pred             EEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecC----CCceEEEeeCCCcEEEEEeec-ce-EEEEecCcccCee
Q 001295          826 MSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ----DNNIIAIGMDDSSIQIYNVRV-DE-VKSKLKGHSKRIT  898 (1106)
Q Consensus       826 ~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~----d~~~la~g~~dg~v~iwd~~~-~~-~~~~l~~h~~~V~  898 (1106)
                      ++++ ||+|.|..+.+.+...++. -..++.+++++|+    ..+.+++|+.-| +.++.-.= |. .-..+..-.++|.
T Consensus        87 asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~  164 (846)
T KOG2066|consen   87 ASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIH  164 (846)
T ss_pred             EEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceE
Confidence            9999 8999999998877766665 3457999999993    156788899888 87876432 11 1123555678999


Q ss_pred             EEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecC
Q 001295          899 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETT  973 (1106)
Q Consensus       899 ~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~  973 (1106)
                      ++.|.  |.++|-++.+| |+|||+.+.+...  .+...........-...+.|.++.+. +.|-..+|+|..++
T Consensus       165 ~i~W~--g~lIAWand~G-v~vyd~~~~~~l~--~i~~p~~~~R~e~fpphl~W~~~~~L-VIGW~d~v~i~~I~  233 (846)
T KOG2066|consen  165 SIKWR--GNLIAWANDDG-VKVYDTPTRQRLT--NIPPPSQSVRPELFPPHLHWQDEDRL-VIGWGDSVKICSIK  233 (846)
T ss_pred             EEEec--CcEEEEecCCC-cEEEeccccceee--ccCCCCCCCCcccCCCceEecCCCeE-EEecCCeEEEEEEe
Confidence            99995  88999999998 9999998865432  12222222222234467888877765 44555677777776

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=98.09  E-value=0.047  Score=63.91  Aligned_cols=467  Identities=11%  Similarity=0.095  Sum_probs=239.9

Q ss_pred             CeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEe--ccCCCeEEEeccccCCce----EEEEEecCCeEEEEeC
Q 001295          459 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE--GHEAPVYSVCPHHKENIQ----FIFSTALDGKIKAWLY  532 (1106)
Q Consensus       459 ~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~----~l~s~~~dg~i~iwd~  532 (1106)
                      .++..+.+.+..  .++.++.++.+...++..+. ++...  .....|.|+.++|.++++    +++.|..+..+.+-  
T Consensus       489 ~~ti~~~~~n~s--qVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l--  563 (1096)
T KOG1897|consen  489 KITIGVVSANAS--QVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMIL--  563 (1096)
T ss_pred             ceEEEEEeecce--EEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEE--
Confidence            344444444444  35555556777777777665 22222  234678898888765543    46666544433332  


Q ss_pred             CCCCceeEeeCCCCeeEEEEEecCCCeEEEeee-----ccceeEEEEcCCCCEEEEEECCCeEEEEECC--CcceeEEEc
Q 001295          533 DNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR-----KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD--SVQLLTSID  605 (1106)
Q Consensus       533 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~--~~~~~~~~~  605 (1106)
                                         .+.||...+.....     ...+-...+-.+..+|+++..||.+.-|.+.  +|..-..-+
T Consensus       564 -------------------~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk  624 (1096)
T KOG1897|consen  564 -------------------TFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKK  624 (1096)
T ss_pred             -------------------EECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccc
Confidence                               23333321111100     1123334444556789999999998777554  443332222


Q ss_pred             cCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhccccccc
Q 001295          606 ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLAD  685 (1106)
Q Consensus       606 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  685 (1106)
                      .+-+..++.--.|+..++.-+.+..|.-..+|..+.. -.+..+.-..-.          .+++..              
T Consensus       625 ~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~k-Lv~spls~kev~----------~~c~f~--------------  679 (1096)
T KOG1897|consen  625 VTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGK-LVYSPLSLKEVN----------HMCPFN--------------  679 (1096)
T ss_pred             cccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCc-EEEeccchHHhh----------hhcccc--------------
Confidence            2333445555566665555555555566666644322 111111000000          000000              


Q ss_pred             ccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCc
Q 001295          686 RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNA  765 (1106)
Q Consensus       686 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  765 (1106)
                                       ++...-.+.....+.+++..++......... +.     -......+++.+....+.+.+...
T Consensus       680 -----------------s~a~~d~l~~~~~~~l~i~tid~iqkl~irt-vp-----l~~~prrI~~q~~sl~~~v~s~r~  736 (1096)
T KOG1897|consen  680 -----------------SDAYPDSLASANGGALTIGTIDEIQKLHIRT-VP-----LGESPRRICYQESSLTFGVLSNRI  736 (1096)
T ss_pred             -----------------cccCCceEEEecCCceEEEEecchhhcceee-ec-----CCCChhheEecccceEEEEEeccc
Confidence                             0111122233334667777776544322211 21     123445566666444444443321


Q ss_pred             eEEEeeccccccCCCCccccccCccccCCCCCCcccc-ccCCCCCCCCeeEEEEecC-CCEEEEEe-----------CCe
Q 001295          766 IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN-DVTDSNPEEAVPCFALSKN-DSYVMSAS-----------GGK  832 (1106)
Q Consensus       766 ~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~v~~l~~s~~-~~~l~~~s-----------dg~  832 (1106)
                      ....      ..  .+.......++++|..+-+.... .+...+....+.++.|..| +.++++|.           .|.
T Consensus       737 e~~~------~~--~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GR  808 (1096)
T KOG1897|consen  737 ESSA------EY--YGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGR  808 (1096)
T ss_pred             ccch------hh--cCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccce
Confidence            1110      00  11111222345566655543332 1111111223444457766 77888772           277


Q ss_pred             EEEEEcCCCceeeeecCC--CCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEE
Q 001295          833 ISLFNMMTFKTMATFMPP--PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLV  910 (1106)
Q Consensus       833 i~vwd~~~~~~~~~~~~~--~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~  910 (1106)
                      |.||.+.....+.....+  .+.+.++..-  +|++||.  -+..|++|+..+.+.++.-..|...+..+...-.|..++
T Consensus       809 Iivfe~~e~~~L~~v~e~~v~Gav~aL~~f--ngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~  884 (1096)
T KOG1897|consen  809 IIVFEFEELNSLELVAETVVKGAVYALVEF--NGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIA  884 (1096)
T ss_pred             EEEEEEecCCceeeeeeeeeccceeehhhh--CCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEE
Confidence            899988874444433222  3445555443  5777764  467899999999877777778999999999999999999


Q ss_pred             EEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCc----------eEeee
Q 001295          911 SSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL----------ECVKQ  980 (1106)
Q Consensus       911 s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~----------~~~~~  980 (1106)
                      .|+--+.+.+-..+..+-   .+......-.+  ...+++.+-.+..++.+-.++.+.+-...+.          +.+..
T Consensus       885 VgDlm~Sitll~y~~~eg---~f~evArD~~p--~Wmtaveil~~d~ylgae~~gNlf~v~~d~~~~td~eR~~l~~~~~  959 (1096)
T KOG1897|consen  885 VGDLMRSITLLQYKGDEG---NFEEVARDYNP--NWMTAVEILDDDTYLGAENSGNLFTVRKDSDATTDEERQILEEVGK  959 (1096)
T ss_pred             EeeccceEEEEEEeccCC---ceEEeehhhCc--cceeeEEEecCceEEeecccccEEEEEecCCCCchhhhhcccceee
Confidence            999888877766554331   12222222222  4677888888888887766666555433221          01111


Q ss_pred             cccC------CCCCCeeEE--EECCCCCEEEEEEcCCeEEEE
Q 001295          981 WVPR------ESSAPITHA--TFSCDSQLVYACFLDATVCVF 1014 (1106)
Q Consensus       981 ~~~~------~h~~~v~~l--~~s~d~~~l~t~s~Dg~i~vw 1014 (1106)
                      |..+      .|..-|.++  ..+|-+..+..|..+|.|-+-
T Consensus       960 ~hlGelvn~f~hg~lv~~~~~s~~~~~~~vlfgTv~GsIG~i 1001 (1096)
T KOG1897|consen  960 FHLGELVNKFRHGSLVMQLGDSMIPLEPKVLFGTVNGSIGII 1001 (1096)
T ss_pred             EEeccceeeeeecceEeeccccccCCCCcEEEEEccceEEEE
Confidence            1110      133334441  334555567888889988765

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.06  E-value=7e-05  Score=85.08  Aligned_cols=185  Identities=11%  Similarity=0.111  Sum_probs=129.5

Q ss_pred             CCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCC
Q 001295          423 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA  502 (1106)
Q Consensus       423 dg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~  502 (1106)
                      ++..++-|+-...+..+|+.+.+..+.   ..-..+.|.-++.  +++  ++.+|...|+|.+-|..+.+.++++..|.+
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~---~~v~a~~v~imR~--Nnr--~lf~G~t~G~V~LrD~~s~~~iht~~aHs~  218 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRT---TNVSASGVTIMRY--NNR--NLFCGDTRGTVFLRDPNSFETIHTFDAHSG  218 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeee---eeccCCceEEEEe--cCc--EEEeecccceEEeecCCcCceeeeeecccc
Confidence            455677788788899999998776542   2222334655554  566  799999999999999999999999999999


Q ss_pred             CeEEEeccccCCceEEEEEec---------CCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEE
Q 001295          503 PVYSVCPHHKENIQFIFSTAL---------DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  573 (1106)
Q Consensus       503 ~v~~~~~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~  573 (1106)
                      .|.++..    .|+.|++||.         |.-|++||++..+.+.-+..+.++ .-+.|.|.-                
T Consensus       219 siSDfDv----~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl----------------  277 (1118)
T KOG1275|consen  219 SISDFDV----QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSL----------------  277 (1118)
T ss_pred             ceeeeec----cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccc----------------
Confidence            9998864    3468888876         456899999987665443333221 122222221                


Q ss_pred             EcCCCCEEEEEECCCeEEEEECCC-cce-eEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEc
Q 001295          574 FDTTKNRFLAAGDDFSIKFWDMDS-VQL-LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT  639 (1106)
Q Consensus       574 ~~~~~~~l~~~~~d~~i~iwd~~~-~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~  639 (1106)
                          ...+++++..|...+-|..+ +.+ ...+..+-....+..++++++|+.++.|..+|.|.+|.-
T Consensus       278 ----~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  278 ----TTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             ----cceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence                13477788888888888322 111 222222222335889999999999999999999999973

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.06  E-value=0.0031  Score=69.98  Aligned_cols=103  Identities=17%  Similarity=0.288  Sum_probs=62.8

Q ss_pred             ecCCCeEEEEE--------eccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEE
Q 001295          359 HPVQQTLLLVG--------TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA  430 (1106)
Q Consensus       359 sp~g~~llatg--------~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~  430 (1106)
                      |||++++|+.-        +..+.+.|||+++++...                    +......+....|||||+++|..
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------------------l~~~~~~~~~~~~sP~g~~~~~v   60 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------------------LTPPPPKLQDAKWSPDGKYIAFV   60 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------------------SS-EETTBSEEEE-SSSTEEEEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------------------CcCCccccccceeecCCCeeEEE
Confidence            78999866532        123578899998876543                    12225678899999999999988


Q ss_pred             eCCCeEEEEEccCCceeeeeeeeccc----------------cCCeeEEEEcCCCCceEEEEe-cCCCcEEEE
Q 001295          431 YSRHIVQIYSYHGGDEVRQHLEIDAH----------------VGGVNDIAFSHPNKQLCVITC-GDDKTIKVW  486 (1106)
Q Consensus       431 ~~d~~v~iwd~~~~~~~~~~~~l~~h----------------~~~V~~~~~s~d~~~~~l~s~-~~d~~i~iw  486 (1106)
                      . ++.|.+++..+++..+.  +..|-                -+.-..+-||||+++  |+.. -++..|..+
T Consensus        61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~--la~~~~d~~~v~~~  128 (353)
T PF00930_consen   61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKY--LAFLRFDEREVPEY  128 (353)
T ss_dssp             E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSE--EEEEEEE-TTS-EE
T ss_pred             e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCE--EEEEEECCcCCceE
Confidence            6 57899999888754432  22220                122366889999995  4333 334444444

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.05  E-value=0.0007  Score=74.71  Aligned_cols=281  Identities=12%  Similarity=0.171  Sum_probs=141.8

Q ss_pred             ceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCcccc------------ccCccccCCC--------CCCcccccc
Q 001295          745 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATA------------SVAPQLWQPP--------SGIMMTNDV  804 (1106)
Q Consensus       745 ~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~------------~~~~~~w~~~--------~~~~~~~~~  804 (1106)
                      .|+.+.|+++...++++...|.+.||.+..+..........            ...-.+-|+.        .|......+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            57899999998899999999999999988765443000000            0011122221        122111112


Q ss_pred             CCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeee--ecC------CCCCeeEEEEec----CCC---ceEE
Q 001295          805 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMAT--FMP------PPPAATFLAFHP----QDN---NIIA  868 (1106)
Q Consensus       805 ~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~--~~~------~~~~v~~l~~s~----~d~---~~la  868 (1106)
                      ..  ..++|++++.| |--++|+|. +|.+.|.|++....+..  +..      ....++++.|+.    +|+   -++.
T Consensus        83 ~~--~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~  159 (395)
T PF08596_consen   83 DA--KQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL  159 (395)
T ss_dssp             -----S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred             ec--cCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence            22  47899999997 556999998 89999999987776654  221      234688888872    133   4788


Q ss_pred             EeeCCCcEEEEEeec---ceEEEEe----cCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCccccccee--ec-ccC
Q 001295          869 IGMDDSSIQIYNVRV---DEVKSKL----KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRF--LQ-IPT  938 (1106)
Q Consensus       869 ~g~~dg~v~iwd~~~---~~~~~~l----~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~--~~-~~~  938 (1106)
                      +|+..|.+.+|.+.-   +.....+    ..+.++|..+.                  ..+.++++......  ++ ...
T Consensus       160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~------------------~i~~~~G~~a~At~~~~~~l~~  221 (395)
T PF08596_consen  160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSII------------------PINADTGESALATISAMQGLSK  221 (395)
T ss_dssp             EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEE------------------EEETTT--B-B-BHHHHHGGGG
T ss_pred             EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEE------------------EEECCCCCcccCchhHhhcccc
Confidence            899999999998752   2111111    12223332222                  22333332211100  00 000


Q ss_pred             CCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCceEeeecccCCCCCCeeEEEEC-----CCCCEEEEEEcCCeEEE
Q 001295          939 GRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFS-----CDSQLVYACFLDATVCV 1013 (1106)
Q Consensus       939 ~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s-----~d~~~l~t~s~Dg~i~v 1013 (1106)
                      +.             +...+++++.+..++++...+.+......  ........+++-     ..+..|++-..+|.|++
T Consensus       222 g~-------------~i~g~vVvvSe~~irv~~~~~~k~~~K~~--~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i  286 (395)
T PF08596_consen  222 GI-------------SIPGYVVVVSESDIRVFKPPKSKGAHKSF--DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRI  286 (395)
T ss_dssp             T-----------------EEEEEE-SSEEEEE-TT---EEEEE---SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEE
T ss_pred             CC-------------CcCcEEEEEcccceEEEeCCCCcccceee--ccccccceEEEEeecccCCceEEEEEECCCcEEE
Confidence            10             11235666889999999998887766544  112223334442     35667888899999999


Q ss_pred             EEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEee
Q 001295         1014 FSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1069 (1106)
Q Consensus      1014 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~ 1069 (1106)
                      +.+...+.+..+.......    .....  ..++++ +|+.++-.+ ...+.++.+
T Consensus       287 ~SLP~Lkei~~~~l~~~~d----~~~~~--~ssis~-~Gdi~~~~g-psE~~l~sv  334 (395)
T PF08596_consen  287 YSLPSLKEIKSVSLPPPLD----SRRLS--SSSISR-NGDIFYWTG-PSEIQLFSV  334 (395)
T ss_dssp             EETTT--EEEEEE-SS-------HHHHT--T-EE-T-TS-EEEE-S-SSEEEEEEE
T ss_pred             EECCCchHhhcccCCCccc----ccccc--ccEECC-CCCEEEEeC-cccEEEEEE
Confidence            9999999998877321110    11122  355666 578776665 344444444

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.05  E-value=0.00059  Score=76.00  Aligned_cols=121  Identities=10%  Similarity=0.031  Sum_probs=93.3

Q ss_pred             CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEE
Q 001295          349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  428 (1106)
Q Consensus       349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  428 (1106)
                      |...|.--+++..+++ ++.|+.-|.+.+++-.+++....                  ...+-.+.+..+..|++..++|
T Consensus        32 ~~~~v~lTc~dst~~~-l~~GsS~G~lyl~~R~~~~~~~~------------------~~~~~~~~~~~~~vs~~e~lvA   92 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEY-LAMGSSAGSVYLYNRHTGEMRKL------------------KNEGATGITCVRSVSSVEYLVA   92 (726)
T ss_pred             CcceEEEEEeecCCce-EEEecccceEEEEecCchhhhcc------------------cccCccceEEEEEecchhHhhh
Confidence            4556666677888886 99999999999999887766542                  1233455677788999999999


Q ss_pred             EEeCCCeEEEEEccCCceeeeeee--e-ccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCC
Q 001295          429 VAYSRHIVQIYSYHGGDEVRQHLE--I-DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN  490 (1106)
Q Consensus       429 s~~~d~~v~iwd~~~~~~~~~~~~--l-~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~  490 (1106)
                      .|+..|.|.|+-+..+........  + ..|...|++++|++|+.  .+.+|...|+|.+-.+.+
T Consensus        93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen   93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEech
Confidence            999999999998876433222111  1 23778999999999999  799999999999888776

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.02  E-value=0.004  Score=72.29  Aligned_cols=214  Identities=12%  Similarity=0.090  Sum_probs=112.6

Q ss_pred             CCEEEEEeCCCeEEEEEccCCceeeeeeeecc---ccCCe--eEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEe
Q 001295          424 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDA---HVGGV--NDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE  498 (1106)
Q Consensus       424 g~~las~~~d~~v~iwd~~~~~~~~~~~~l~~---h~~~V--~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  498 (1106)
                      +..+..++.++.|.-.|..+|+.+-....-..   +...+  ..++.. ++.  .++.++.++.|.-+|.++|+.+..+.
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~--~V~v~~~~g~v~AlD~~TG~~~W~~~  137 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPR--KVFFGTFDGRLVALDAETGKQVWKFG  137 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCC--eEEEecCCCeEEEEECCCCCEeeeec
Confidence            44566677789999999999886543211100   00011  011221 213  47777889999999999999987776


Q ss_pred             ccCCC--eEEEeccccCCceEEEEEe---------cCCeEEEEeCCCCCceeEeeCCCCeeEEEE-EecCCCeEEEeeec
Q 001295          499 GHEAP--VYSVCPHHKENIQFIFSTA---------LDGKIKAWLYDNLGSRVDYEAPGRWCTTMA-YSADGTRTYQGFRK  566 (1106)
Q Consensus       499 ~h~~~--v~~~~~~~~~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~-~s~~~~~~~~~~~~  566 (1106)
                      .....  -..+.-.+.-.+..++.++         .+|.+..+|..+++.+..+.........+. +.... ... +...
T Consensus       138 ~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~-~~~-~~~g  215 (488)
T cd00216         138 NNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDR-QMW-GPGG  215 (488)
T ss_pred             CCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCc-cee-cCCC
Confidence            43221  0001101111113455553         368899999999888776654321110000 00000 000 0000


Q ss_pred             cc-eeEEEEcCCCCEEEEEECCC------------------eEEEEECCCcceeEEEccCCCCC----CcCeEEEc----
Q 001295          567 RS-LGVVQFDTTKNRFLAAGDDF------------------SIKFWDMDSVQLLTSIDADGGLP----ASPRIRFN----  619 (1106)
Q Consensus       567 ~~-i~~~~~~~~~~~l~~~~~d~------------------~i~iwd~~~~~~~~~~~~~~~~~----~v~~v~~s----  619 (1106)
                      .. -....+++.+..++.++.++                  .|.-+|+.+|+.+-.++...+..    ......+.    
T Consensus       216 ~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~  295 (488)
T cd00216         216 GTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKP  295 (488)
T ss_pred             CCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccc
Confidence            01 11234455555677766554                  78889999999887765321100    00011111    


Q ss_pred             cCCC---EEEEEeCCCcEEEEEccCC
Q 001295          620 KDGC---LLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       620 ~~~~---~l~~~~~dg~i~iwd~~~~  642 (1106)
                      -++.   .+++++.+|.+...|..+|
T Consensus       296 ~~g~~~~~V~~g~~~G~l~ald~~tG  321 (488)
T cd00216         296 KDGKPVPAIVHAPKNGFFYVLDRTTG  321 (488)
T ss_pred             cCCCeeEEEEEECCCceEEEEECCCC
Confidence            1333   5677778888888888777

The alignment model contains an 8-bladed beta-propeller.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.01  E-value=0.00055  Score=75.94  Aligned_cols=286  Identities=14%  Similarity=0.144  Sum_probs=149.5

Q ss_pred             CCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCC
Q 001295          587 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT  666 (1106)
Q Consensus       587 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  666 (1106)
                      .+.+.+||+.+++.......   ...+....|+|+|+.++.... +.|.+++..++....-+..+ ...           
T Consensus        22 ~~~y~i~d~~~~~~~~l~~~---~~~~~~~~~sP~g~~~~~v~~-~nly~~~~~~~~~~~lT~dg-~~~-----------   85 (353)
T PF00930_consen   22 KGDYYIYDIETGEITPLTPP---PPKLQDAKWSPDGKYIAFVRD-NNLYLRDLATGQETQLTTDG-EPG-----------   85 (353)
T ss_dssp             EEEEEEEETTTTEEEESS-E---ETTBSEEEE-SSSTEEEEEET-TEEEEESSTTSEEEESES---TTT-----------
T ss_pred             ceeEEEEecCCCceEECcCC---ccccccceeecCCCeeEEEec-CceEEEECCCCCeEEecccc-cee-----------
Confidence            46799999999765544433   235788999999999998875 78998887666211111111 000           


Q ss_pred             cCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccce
Q 001295          667 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI  746 (1106)
Q Consensus       667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i  746 (1106)
                                                                +..|-.|     |-.++               .--..-
T Consensus        86 ------------------------------------------i~nG~~d-----wvyeE---------------Ev~~~~  103 (353)
T PF00930_consen   86 ------------------------------------------IYNGVPD-----WVYEE---------------EVFDRR  103 (353)
T ss_dssp             ------------------------------------------EEESB-------HHHHH---------------HTSSSS
T ss_pred             ------------------------------------------EEcCccc-----eeccc---------------cccccc
Confidence                                                      0000000     00000               000112


Q ss_pred             EEEEEcCCCceEEEeecC-ceEEEeeccccc-------------cCCCCccccccCccccCCCCCCccccccCC--CCCC
Q 001295          747 SRLIFTNSGNAILALASN-AIHLLWKWQRTE-------------RNSSGKATASVAPQLWQPPSGIMMTNDVTD--SNPE  810 (1106)
Q Consensus       747 ~~~~~s~~~~~l~~~~~d-g~i~iw~~~~~~-------------~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~--~~~~  810 (1106)
                      ..+.||||+++|+...-| ..+..+.+....             ....|..-....+.++++.+++........  ....
T Consensus       104 ~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~  183 (353)
T PF00930_consen  104 SAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQD  183 (353)
T ss_dssp             BSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSS
T ss_pred             cceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCc
Confidence            457788888877766654 434433332110             111223333445667788777654322220  1145


Q ss_pred             CCeeEEEEecCCCEEEEE-e--C---CeEEEEEcCCCceeeeecC-CC---CCeeEEEEe-cCCCceEEEeeCCCcEEEE
Q 001295          811 EAVPCFALSKNDSYVMSA-S--G---GKISLFNMMTFKTMATFMP-PP---PAATFLAFH-PQDNNIIAIGMDDSSIQIY  879 (1106)
Q Consensus       811 ~~v~~l~~s~~~~~l~~~-s--d---g~i~vwd~~~~~~~~~~~~-~~---~~v~~l~~s-~~d~~~la~g~~dg~v~iw  879 (1106)
                      .-+..+.|.++++.|+.. .  +   -.+.+.|..++.+...... ..   ..-....|. ++++.+|.....||.-+||
T Consensus       184 ~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly  263 (353)
T PF00930_consen  184 YYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLY  263 (353)
T ss_dssp             EEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEE
T ss_pred             cCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEE
Confidence            668899999999944433 3  2   2377778877655433221 11   223355665 6567777777788866665


Q ss_pred             Eee--cceEEEEecCcccCeeE-EEEecCCCEEE-EEcCCC--cEEEE--eCC-CcccccceeecccCCCCCCCCCC-ce
Q 001295          880 NVR--VDEVKSKLKGHSKRITG-LAFSHALNVLV-SSGADS--QLCVW--SSD-GWEKQKNRFLQIPTGRTPTAQSD-TR  949 (1106)
Q Consensus       880 d~~--~~~~~~~l~~h~~~V~~-l~~s~d~~~l~-s~s~Dg--~i~vw--d~~-~~~~~~~~~~~~~~~~~~~~~~i-~~  949 (1106)
                      -+.  .+. ...+....-.|+. +.|+++++.|. ++..++  .-.+|  +++ .++   ..++....       .. ..
T Consensus       264 ~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~---~~~LT~~~-------~~~~~  332 (353)
T PF00930_consen  264 LYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE---PKCLTCED-------GDHYS  332 (353)
T ss_dssp             EEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE---EEESSTTS-------STTEE
T ss_pred             EEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC---eEeccCCC-------CCceE
Confidence            554  344 4566656666755 67788877654 555432  34444  454 322   12222221       22 48


Q ss_pred             EEEcCCCcEEEE
Q 001295          950 VQFHQDQIHFLV  961 (1106)
Q Consensus       950 ~~~s~dg~~l~~  961 (1106)
                      +.|||+|++++.
T Consensus       333 ~~~Spdg~y~v~  344 (353)
T PF00930_consen  333 ASFSPDGKYYVD  344 (353)
T ss_dssp             EEE-TTSSEEEE
T ss_pred             EEECCCCCEEEE
Confidence            999999999987

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.00  E-value=0.0023  Score=70.69  Aligned_cols=268  Identities=14%  Similarity=0.202  Sum_probs=139.7

Q ss_pred             CcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeE-E-----e------------eeeeeccCcCCc------cccccc
Q 001295          352 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLV-L-----R------------NFKVWDLGACSM------PLQAAL  407 (1106)
Q Consensus       352 ~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~-~-----~------------~~~~~d~~~~~~------~~~~~~  407 (1106)
                      .|+++.|+++..- ||+|...|.|.||.+...+... .     .            .-++.|+.....      -++...
T Consensus         3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l   81 (395)
T PF08596_consen    3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL   81 (395)
T ss_dssp             -EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred             eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence            5899999999775 8899999999999986654332 0     0            112223322111      123334


Q ss_pred             cCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeecc------ccCCeeEEEEc-----CCC-CceEEE
Q 001295          408 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDA------HVGGVNDIAFS-----HPN-KQLCVI  475 (1106)
Q Consensus       408 ~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~------h~~~V~~~~~s-----~d~-~~~~l~  475 (1106)
                      +....++|++++.| |=.++|.|+.+|.+.|.|+++...+... .+..      ....|+++.|+     .|+ ..+.++
T Consensus        82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~-~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~  159 (395)
T PF08596_consen   82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNE-NIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL  159 (395)
T ss_dssp             E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEE-EGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred             eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeec-cccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence            56668999999998 5559999999999999999887665431 2222      33468888886     222 124788


Q ss_pred             EecCCCcEEEEeCC--C-CceeE----EEeccCCCeEEEeccccCC-------------------ceEEEEEecCCeEEE
Q 001295          476 TCGDDKTIKVWDAT--N-GAKQY----IFEGHEAPVYSVCPHHKEN-------------------IQFIFSTALDGKIKA  529 (1106)
Q Consensus       476 s~~~d~~i~iwd~~--~-~~~~~----~~~~h~~~v~~~~~~~~~~-------------------~~~l~s~~~dg~i~i  529 (1106)
                      .|...|.+.+|.+.  . +....    ....+.++|..+......+                   -+-++....+..+++
T Consensus       160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv  239 (395)
T PF08596_consen  160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV  239 (395)
T ss_dssp             EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred             EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence            88899999999765  1 21111    1224556666665221111                   012444455778899


Q ss_pred             EeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCC
Q 001295          530 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG  609 (1106)
Q Consensus       530 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  609 (1106)
                      +...+.+...+..........+.+-+-..                ...+..|++-..+|.|++|.+..-+.+..+.....
T Consensus       240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~----------------~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~  303 (395)
T PF08596_consen  240 FKPPKSKGAHKSFDDPFLCSSASVVPTIS----------------RNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPP  303 (395)
T ss_dssp             E-TT---EEEEE-SS-EEEEEEEEEEEE-----------------EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS-
T ss_pred             EeCCCCcccceeeccccccceEEEEeecc----------------cCCceEEEEEECCCcEEEEECCCchHhhcccCCCc
Confidence            88776554443321111222222211000                11223577888999999999999988888765321


Q ss_pred             --CCCcCeEEEccCCCEEEEEeCCCcEEEEEc
Q 001295          610 --LPASPRIRFNKDGCLLAVSTNDNGIKILAT  639 (1106)
Q Consensus       610 --~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~  639 (1106)
                        ...+...+++++|..++-.+. ..+.++.+
T Consensus       304 ~d~~~~~~ssis~~Gdi~~~~gp-sE~~l~sv  334 (395)
T PF08596_consen  304 LDSRRLSSSSISRNGDIFYWTGP-SEIQLFSV  334 (395)
T ss_dssp             --HHHHTT-EE-TTS-EEEE-SS-SEEEEEEE
T ss_pred             cccccccccEECCCCCEEEEeCc-ccEEEEEE
Confidence              123556788889987766544 34444443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.00  E-value=0.00099  Score=75.89  Aligned_cols=202  Identities=13%  Similarity=0.170  Sum_probs=135.2

Q ss_pred             EEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCC-eeEEEEecCCCceEEEeeCCCc-----EEEEEeecc----
Q 001295          816 FALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPA-ATFLAFHPQDNNIIAIGMDDSS-----IQIYNVRVD----  884 (1106)
Q Consensus       816 l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~-v~~l~~s~~d~~~la~g~~dg~-----v~iwd~~~~----  884 (1106)
                      -++++.+..++.|+ +|.|.+.+-. .+.++.+..+... |+.+.... +..+|++-++|+.     |+||++..-    
T Consensus        29 sc~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~  106 (933)
T KOG2114|consen   29 SCCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN  106 (933)
T ss_pred             eEEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCC
Confidence            35678888999998 8998888743 3445777777777 44444433 4468887777664     899998642    


Q ss_pred             --eEE--EEecC-----cccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCC
Q 001295          885 --EVK--SKLKG-----HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD  955 (1106)
Q Consensus       885 --~~~--~~l~~-----h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~d  955 (1106)
                        .++  ..+..     ...++.+++.|.+-+.+|.|-.||.|..+.-+--+....+..-...+    ..+|+.+++..|
T Consensus       107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~----~~pITgL~~~~d  182 (933)
T KOG2114|consen  107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRG----KEPITGLALRSD  182 (933)
T ss_pred             CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccC----CCCceeeEEecC
Confidence              233  12222     34578899999999999999999999988543322222222222222    258999999999


Q ss_pred             CcE-EEEEeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEee
Q 001295          956 QIH-FLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1025 (1106)
Q Consensus       956 g~~-l~~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~ 1025 (1106)
                      ++. +.++....|.+|.+.... ......+.|+.++.|-.|++...-+++++ +..|.+|+.+.......+
T Consensus       183 ~~s~lFv~Tt~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf  251 (933)
T KOG2114|consen  183 GKSVLFVATTEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAF  251 (933)
T ss_pred             CceeEEEEecceeEEEEecCCC-cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeee
Confidence            988 445778889999998444 33333457788999999987555355553 567999998754443333

>smart00668 CTLH C-terminal to LisH motif

Probab=97.98  E-value=6.1e-06  Score=63.53  Aligned_cols=53  Identities=30%  Similarity=0.510  Sum_probs=42.7

Q ss_pred             cHHHHHHHHhcCCHHHHHHHhcccccccCccccchhhhHHHHHHHHHHHhCCCH
Q 001295           37 NMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDR   90 (1106)
Q Consensus        37 ~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~~~   90 (1106)
                      ++..++++|+.|+|+.|+..+.......... ...+.|.|++|+|+||++.++.
T Consensus         4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~-~~~l~f~L~~q~~lell~~~~~   56 (58)
T smart00668        4 ERKRIRELILKGDWDEALEWLSSLKPPLLER-NSKLEFELRKQKFLELVRQGKL   56 (58)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHcCHHHhcc-CCCchhHHHHHHHHHHHHcCCc
Confidence            3678999999999999999998885332222 2349999999999999998764

Alpha-helical motif of unknown function.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.98  E-value=0.001  Score=74.27  Aligned_cols=281  Identities=13%  Similarity=0.106  Sum_probs=157.3

Q ss_pred             cccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecC
Q 001295          742 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  821 (1106)
Q Consensus       742 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~  821 (1106)
                      +...|.--+++..+++++.|++-|.+++|+-..+                      ........  +....+..++++++
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~----------------------~~~~~~~~--~~~~~~~~~~vs~~   87 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTG----------------------EMRKLKNE--GATGITCVRSVSSV   87 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCch----------------------hhhccccc--CccceEEEEEecch
Confidence            4455666678889999999999999999875432                      22221111  13445667788888


Q ss_pred             CCEEEEEe-CCeEEEEEcCCCceeee------ecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecce----EEEEe
Q 001295          822 DSYVMSAS-GGKISLFNMMTFKTMAT------FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE----VKSKL  890 (1106)
Q Consensus       822 ~~~l~~~s-dg~i~vwd~~~~~~~~~------~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~----~~~~l  890 (1106)
                      ..++|.|+ .|.|.++-+........      -..|...|++++|++ +++.+.+|...|.|..-.+.+..    ....+
T Consensus        88 e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~i  166 (726)
T KOG3621|consen   88 EYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEI  166 (726)
T ss_pred             hHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEechhhhhcccccee
Confidence            88888888 68899988775322111      123678899999999 99999999999999998887721    11222


Q ss_pred             cCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCC-CCceEEEcCC----CcEEEEEeCC
Q 001295          891 KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQ-SDTRVQFHQD----QIHFLVVHET  965 (1106)
Q Consensus       891 ~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~s~d----g~~l~~~~d~  965 (1106)
                      -.-.+.|..+... ++.+|++...-  -.+.+++..+.     .++-  ..+..+ .-...+|-|.    ..-.+++..-
T Consensus       167 l~~ds~IVQlD~~-q~~LLVStl~r--~~Lc~tE~eti-----~QIG--~k~R~~~~~~GACF~~g~~~~q~~~IycaRP  236 (726)
T KOG3621|consen  167 LSEDSEIVQLDYL-QSYLLVSTLTR--CILCQTEAETI-----TQIG--KKPRKSLIDFGACFFPGQCKAQKPQIYCARP  236 (726)
T ss_pred             eccCcceEEeecc-cceehHhhhhh--hheeecchhHH-----HHhc--CCCcCCccccceEEeeccccCCCceEEEecC
Confidence            2344566666665 34445544332  23444443221     1110  000001 1233444443    3344445555


Q ss_pred             eEEEEecCC-ceEeeecccC---------------------------CCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcC
Q 001295          966 QLAIFETTK-LECVKQWVPR---------------------------ESSAPITHATFSCDSQLVYACFLDATVCVFSAA 1017 (1106)
Q Consensus       966 ~v~i~d~~~-~~~~~~~~~~---------------------------~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~ 1017 (1106)
                      ..|+|.++- |..+++...+                           .|.-....+.+-.++ .+++-++-| |+|+|..
T Consensus       237 G~RlWead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~-~vLa~te~G-iyv~d~~  314 (726)
T KOG3621|consen  237 GLRLWEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSD-RVLAWTEVG-IYVFDSN  314 (726)
T ss_pred             CCceEEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecc-eEEEeecce-EEEEEec
Confidence            567776543 3333221110                           000111112222233 333333334 8999988


Q ss_pred             CceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCC
Q 001295         1018 NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus      1018 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
                      +...+.-.+       +  ...|.  .++-   +++-|+.-..||.+++..+.+.+
T Consensus       315 ~~~v~l~se-------~--~~DI~--dVs~---~~neiFvL~~d~~l~~~sv~s~q  356 (726)
T KOG3621|consen  315 NSQVYLWSE-------G--GHDIL--DVSH---CGNEIFVLNLDRGLKVESVASRQ  356 (726)
T ss_pred             cceEEEeec-------C--CCcee--EEee---cCceEEEEecCCceeEEEeehhH
Confidence            877765543       1  11122  2332   36666667778888888776655

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.97  E-value=0.0015  Score=73.13  Aligned_cols=223  Identities=10%  Similarity=0.105  Sum_probs=116.6

Q ss_pred             cceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCC
Q 001295          744 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS  823 (1106)
Q Consensus       744 ~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~  823 (1106)
                      .....+.++|+|+.+++ +.+|...|+.....                      +.        ...+.....+|.+.++
T Consensus        33 ~~p~~ls~npngr~v~V-~g~geY~iyt~~~~----------------------r~--------k~~G~g~~~vw~~~n~   81 (443)
T PF04053_consen   33 IYPQSLSHNPNGRFVLV-CGDGEYEIYTALAW----------------------RN--------KAFGSGLSFVWSSRNR   81 (443)
T ss_dssp             S--SEEEE-TTSSEEEE-EETTEEEEEETTTT----------------------EE--------EEEEE-SEEEE-TSSE
T ss_pred             cCCeeEEECCCCCEEEE-EcCCEEEEEEccCC----------------------cc--------cccCceeEEEEecCcc
Confidence            34688999999997777 67777777752210                      00        0223446688888666


Q ss_pred             EEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEe
Q 001295          824 YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS  903 (1106)
Q Consensus       824 ~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s  903 (1106)
                      +.+.-.+++|.|+.--+.+....+... ..+..+-.    |.+|...+.+ .|.+||..+++.++++...  +|..|.|+
T Consensus        82 yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~----G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws  153 (443)
T PF04053_consen   82 YAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG----GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWS  153 (443)
T ss_dssp             EEEE-TTS-EEEEETTEE-TT-----S-S-EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-
T ss_pred             EEEEECCCeEEEEEcCccccceEEcCC-cccceEEc----CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEE
Confidence            555444788999733233332333321 12333332    6677776644 8999999999999998744  38999999


Q ss_pred             cCCCEEEEEcCCCcEEEEeCCCccc------ccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCceE
Q 001295          904 HALNVLVSSGADSQLCVWSSDGWEK------QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLEC  977 (1106)
Q Consensus       904 ~d~~~l~s~s~Dg~i~vwd~~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~  977 (1106)
                      ++|.+++-.+.+ ++.|++.+....      .....+......   ...|.+.+|..| - ++......++.  +-.|+.
T Consensus       154 ~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~---~~~IkSg~W~~d-~-fiYtT~~~lkY--l~~Ge~  225 (443)
T PF04053_consen  154 DDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEI---SERIKSGCWVED-C-FIYTTSNHLKY--LVNGET  225 (443)
T ss_dssp             TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEETT-E-EEEE-TTEEEE--EETTEE
T ss_pred             CCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEe---cceeEEEEEEcC-E-EEEEcCCeEEE--EEcCCc
Confidence            999999999876 478877554200      000001111110   136788899887 3 33333336666  333332


Q ss_pred             --eeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCC
Q 001295          978 --VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1018 (1106)
Q Consensus       978 --~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~ 1018 (1106)
                        +..+     ..++.=+.+.+....|.....|+.|..+.++.
T Consensus       226 ~~i~~l-----d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  226 GIIAHL-----DKPLYLLGYLPKENRLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             EEEEE------SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred             ceEEEc-----CCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence              3332     45677778888777888888888888887654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>smart00667 LisH Lissencephaly type-1-like homology motif

Probab=97.96  E-value=1.1e-05  Score=53.94  Aligned_cols=32  Identities=38%  Similarity=0.527  Sum_probs=29.7

Q ss_pred             hhHHHHHHHHHHHhHhcHHHHHHHHHHhhCCC
Q 001295            4 LSRELVFLILQFLDEEKFKETVHKLEQESGFF   35 (1106)
Q Consensus         4 ~~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~   35 (1106)
                      .++++.++|+|||...||.+|+++|++|+|+.
T Consensus         2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~   33 (34)
T smart00667        2 SRSELNRLILEYLLRNGYEETAETLQKESGLS   33 (34)
T ss_pred             cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence            36789999999999999999999999999974

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.95  E-value=0.0039  Score=72.33  Aligned_cols=245  Identities=10%  Similarity=0.060  Sum_probs=137.8

Q ss_pred             CEEEEEe-CCeEEEEEcCCCceeeeecCCCCC-----e-eEEEEecCCCceEEEee---------CCCcEEEEEeecceE
Q 001295          823 SYVMSAS-GGKISLFNMMTFKTMATFMPPPPA-----A-TFLAFHPQDNNIIAIGM---------DDSSIQIYNVRVDEV  886 (1106)
Q Consensus       823 ~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~-----v-~~l~~s~~d~~~la~g~---------~dg~v~iwd~~~~~~  886 (1106)
                      ..++.++ ++.|.-+|.++++.+..+......     + ....+.  ++ ++++++         .+|.|+-+|..+|+.
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~-~v~vg~~~~~~~~~~~~g~v~alD~~TG~~  187 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KK-LVIIGSSGAEFFACGVRGALRAYDVETGKL  187 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CC-EEEEeccccccccCCCCcEEEEEECCCCce
Confidence            4555555 899999999999988776543321     1 122232  23 444554         367899999999988


Q ss_pred             EEEecCccc--------------------Ce-eEEEEecCCCEEEEEcCCC------------------cEEEEeCCCcc
Q 001295          887 KSKLKGHSK--------------------RI-TGLAFSHALNVLVSSGADS------------------QLCVWSSDGWE  927 (1106)
Q Consensus       887 ~~~l~~h~~--------------------~V-~~l~~s~d~~~l~s~s~Dg------------------~i~vwd~~~~~  927 (1106)
                      +-++.....                    .| .+.++.+.+..++.++.|+                  .|.-.|.++++
T Consensus       188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~  267 (488)
T cd00216         188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK  267 (488)
T ss_pred             eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence            766543211                    11 1234455567777777665                  68888998887


Q ss_pred             cccceeecccCCCC-CCCCCCceEEE-cCCCc---EEEE-EeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCE
Q 001295          928 KQKNRFLQIPTGRT-PTAQSDTRVQF-HQDQI---HFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQL 1001 (1106)
Q Consensus       928 ~~~~~~~~~~~~~~-~~~~~i~~~~~-s~dg~---~l~~-~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~ 1001 (1106)
                      ..-........... .......-... .-+|.   .+++ +.+|.+...|.++|+.+-.....     ...++.+|  ..
T Consensus       268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-----~~~~~~~~--~~  340 (488)
T cd00216         268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-----EQPMAYDP--GL  340 (488)
T ss_pred             EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-----ccccccCC--ce
Confidence            64322111110000 00000000000 12343   3444 47899999999999987654321     11233444  23


Q ss_pred             EEEE------------------EcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCc
Q 001295         1002 VYAC------------------FLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGG 1063 (1106)
Q Consensus      1002 l~t~------------------s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~ 1063 (1106)
                      ++.+                  ..+|.|.-.|..+|+.+-+..................-.+..   .+..|++++.||.
T Consensus       341 vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~---~g~~v~~g~~dG~  417 (488)
T cd00216         341 VYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT---AGNLVFAGAADGY  417 (488)
T ss_pred             EEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe---cCCeEEEECCCCe
Confidence            3332                  236788888999998887665321100000000010001111   3578889999999


Q ss_pred             EEEEeecCCCCccCCCC
Q 001295         1064 VHVFEPLESEGKWGVPP 1080 (1106)
Q Consensus      1064 v~vW~~~~~~~~~~~~~ 1080 (1106)
                      |+.+|..+|+..|...-
T Consensus       418 l~ald~~tG~~lW~~~~  434 (488)
T cd00216         418 FRAFDATTGKELWKFRT  434 (488)
T ss_pred             EEEEECCCCceeeEEEC
Confidence            99999999998888643

The alignment model contains an 8-bladed beta-propeller.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.94  E-value=0.0028  Score=66.22  Aligned_cols=244  Identities=14%  Similarity=0.155  Sum_probs=142.0

Q ss_pred             eeEEEEecCCCEEEEEe----C-------CeEEEEEcCCCceeeeecCCCC-------CeeEEEEecCCCceEEEee--C
Q 001295          813 VPCFALSKNDSYVMSAS----G-------GKISLFNMMTFKTMATFMPPPP-------AATFLAFHPQDNNIIAIGM--D  872 (1106)
Q Consensus       813 v~~l~~s~~~~~l~~~s----d-------g~i~vwd~~~~~~~~~~~~~~~-------~v~~l~~s~~d~~~la~g~--~  872 (1106)
                      .-.+..+||++.+.+++    .       .-|.+||..+......+.-...       ....+++|. |++++.+..  -
T Consensus        38 ~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~-dgk~~~V~N~TP  116 (342)
T PF06433_consen   38 LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSA-DGKFLYVQNFTP  116 (342)
T ss_dssp             SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-T-TSSEEEEEEESS
T ss_pred             CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEcc-CCcEEEEEccCC
Confidence            34577899999888763    1       2399999999877765432221       223467777 777766543  3


Q ss_pred             CCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEE
Q 001295          873 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF  952 (1106)
Q Consensus       873 dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  952 (1106)
                      -.+|.|.|+..++.+.++.-..  ...+--+. .+-+.+.+.||++.-..++...+...+....+.....  .....-++
T Consensus       117 a~SVtVVDl~~~kvv~ei~~PG--C~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~d--p~f~~~~~  191 (342)
T PF06433_consen  117 ATSVTVVDLAAKKVVGEIDTPG--CWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDD--PLFEHPAY  191 (342)
T ss_dssp             SEEEEEEETTTTEEEEEEEGTS--EEEEEEEE-TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS---B-S--EE
T ss_pred             CCeEEEEECCCCceeeeecCCC--EEEEEecC-CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCc--ccccccce
Confidence            3578888888888877765321  11121122 2457788899999999888433322222222222111  12233444


Q ss_pred             cC-CCcEEEEEeCCeEEEEecCCceEe--eecccC------CC--CCCeeEEEECCCCCEEEEEEcC---C-------eE
Q 001295          953 HQ-DQIHFLVVHETQLAIFETTKLECV--KQWVPR------ES--SAPITHATFSCDSQLVYACFLD---A-------TV 1011 (1106)
Q Consensus       953 s~-dg~~l~~~~d~~v~i~d~~~~~~~--~~~~~~------~h--~~~v~~l~~s~d~~~l~t~s~D---g-------~i 1011 (1106)
                      +. +++++.++.+|.|+--|+......  ..|..-      .+  .+...-+++.+....|++-...   +       .|
T Consensus       192 ~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteV  271 (342)
T PF06433_consen  192 SRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEV  271 (342)
T ss_dssp             ETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEE
T ss_pred             ECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEE
Confidence            44 456666788888888887655421  222110      00  1233456777766665544322   1       48


Q ss_pred             EEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEE-eCCCcEEEEeecCCC
Q 001295         1012 CVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG-LSDGGVHVFEPLESE 1073 (1106)
Q Consensus      1012 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~-~~Dg~v~vW~~~~~~ 1073 (1106)
                      .++|+.+++.+.++.    +.+.     +.  +|..+.++.-+|++. ..++.|.+||..+|+
T Consensus       272 Wv~D~~t~krv~Ri~----l~~~-----~~--Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk  323 (342)
T PF06433_consen  272 WVYDLKTHKRVARIP----LEHP-----ID--SIAVSQDDKPLLYALSAGDGTLDVYDAATGK  323 (342)
T ss_dssp             EEEETTTTEEEEEEE----EEEE-----ES--EEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred             EEEECCCCeEEEEEe----CCCc-----cc--eEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence            889999999999987    3322     33  677777665577655 458999999999998

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.92  E-value=0.00048  Score=75.72  Aligned_cols=114  Identities=18%  Similarity=0.186  Sum_probs=81.3

Q ss_pred             CCCeeEEEEecC-CCEEEEE----e-CCe----EEEEEcCCCceeee---ecCCCCCeeEEEEecCCCceEEEeeCCCcE
Q 001295          810 EEAVPCFALSKN-DSYVMSA----S-GGK----ISLFNMMTFKTMAT---FMPPPPAATFLAFHPQDNNIIAIGMDDSSI  876 (1106)
Q Consensus       810 ~~~v~~l~~s~~-~~~l~~~----s-dg~----i~vwd~~~~~~~~~---~~~~~~~v~~l~~s~~d~~~la~g~~dg~v  876 (1106)
                      .....++.||-. ...+.+.    + +|.    -.+|+....+..+.   --.....|.+++++| +...|+.|+.||+|
T Consensus       205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSi  283 (545)
T PF11768_consen  205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSI  283 (545)
T ss_pred             cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeE
Confidence            344467777753 3333333    2 343    45677765443221   123567899999999 88999999999999


Q ss_pred             EEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCc
Q 001295          877 QIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW  926 (1106)
Q Consensus       877 ~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~  926 (1106)
                      .+||...+..  .+..+.-..+.++|+|+|..+++|+.-|.+.+||+.-.
T Consensus       284 iLyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  284 ILYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             EEEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            9999876632  23334556789999999999999999999999998753

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.85  E-value=0.05  Score=63.39  Aligned_cols=77  Identities=12%  Similarity=0.125  Sum_probs=47.6

Q ss_pred             CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeE-EEEecCCCEE
Q 001295          831 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG-LAFSHALNVL  909 (1106)
Q Consensus       831 g~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~-l~~s~d~~~l  909 (1106)
                      |.|.-+|+.+++..-............ +.- .+.+++.++.||.++.+|..+|+.+-+.+-.....-+ +.|.-+|+..
T Consensus       441 g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t-~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~qY  518 (527)
T TIGR03075       441 GSLIAWDPITGKIVWEHKEDFPLWGGV-LAT-AGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQY  518 (527)
T ss_pred             eeEEEEeCCCCceeeEecCCCCCCCcc-eEE-CCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCEEE
Confidence            458888888888776654322212222 112 3457777888999999999999998877654322111 3344455543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.84  E-value=0.0052  Score=65.61  Aligned_cols=175  Identities=14%  Similarity=0.177  Sum_probs=87.8

Q ss_pred             CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeC---CC-cEEEEEeec-ceEEEEecCccc--CeeEEEEe
Q 001295          831 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD---DS-SIQIYNVRV-DEVKSKLKGHSK--RITGLAFS  903 (1106)
Q Consensus       831 g~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~---dg-~v~iwd~~~-~~~~~~l~~h~~--~V~~l~~s  903 (1106)
                      ..|.-.|+.+|+....+. ....+..+.|||.|..+|+.+-+   +. .-|||-+.+ +.....+..|..  .+..=-|+
T Consensus       168 ~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~  246 (386)
T PF14583_consen  168 CRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWV  246 (386)
T ss_dssp             EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-
T ss_pred             ceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccccccccc
Confidence            445566777776544444 45567889999977777777543   22 236777664 444455544432  23444589


Q ss_pred             cCCCEEEEEc-----CCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCC------------
Q 001295          904 HALNVLVSSG-----ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHET------------  965 (1106)
Q Consensus       904 ~d~~~l~s~s-----~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~------------  965 (1106)
                      |||..|.--+     .+..|.-+|+.+++...  +....        .-..+-.++||++++. +.|.            
T Consensus       247 ~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~--~~~~p--------~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~  316 (386)
T PF14583_consen  247 PDGSTIWYDSYTPGGQDFWIAGYDPDTGERRR--LMEMP--------WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKI  316 (386)
T ss_dssp             TTSS-EEEEEEETTT--EEEEEE-TTT--EEE--EEEE---------SEEEEEE-TTSSEEEEEE---------------
T ss_pred             CCCCEEEEEeecCCCCceEEEeeCCCCCCceE--EEeCC--------ceeeeEEcCCCCEEEecCCCCCcccccccccee
Confidence            9998776532     34567777888765321  22221        1235666789999987 5442            


Q ss_pred             ----eEEEEecCCceEeeecc------cCCCCCCe--eEEEECCCCCEEE-EEEcCCeEEEEEc
Q 001295          966 ----QLAIFETTKLECVKQWV------PRESSAPI--THATFSCDSQLVY-ACFLDATVCVFSA 1016 (1106)
Q Consensus       966 ----~v~i~d~~~~~~~~~~~------~~~h~~~v--~~l~~s~d~~~l~-t~s~Dg~i~vwd~ 1016 (1106)
                          -|+++++..++......      ...|...+  -...|||||++++ +....|...||-+
T Consensus       317 ~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v  380 (386)
T PF14583_consen  317 ENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV  380 (386)
T ss_dssp             ----EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred             cCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence                46678887766542211      11111112  3578999999965 4556677666644

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.83  E-value=0.0029  Score=64.59  Aligned_cols=217  Identities=11%  Similarity=0.106  Sum_probs=116.0

Q ss_pred             eecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCc-ccCeeEEEEecCCCEEEEEcCCCcEEEEeCC
Q 001295          846 TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH-SKRITGLAFSHALNVLVSSGADSQLCVWSSD  924 (1106)
Q Consensus       846 ~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h-~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~  924 (1106)
                      .+.+-...+..++|.|++++++|+....+.|..++. +|+.++++.-. .+-.-+|++..++.++++.-.++.+.+.++.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            455556679999999966788999999999988886 47877766432 3457889998888888877779999999984


Q ss_pred             Ccccc--cceeecccCCC-CCCCCCCceEEEcCCCcEEEEE-eCCeEEEEecCC---ceEeee-----cc-cCCCCCCee
Q 001295          925 GWEKQ--KNRFLQIPTGR-TPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK---LECVKQ-----WV-PRESSAPIT  991 (1106)
Q Consensus       925 ~~~~~--~~~~~~~~~~~-~~~~~~i~~~~~s~dg~~l~~~-~d~~v~i~d~~~---~~~~~~-----~~-~~~h~~~v~  991 (1106)
                      .....  ........-+. ...+.....++|++.++.|.++ ...-..+|.+..   ...+..     +. .......+.
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S  174 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS  174 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence            42211  11111111111 1223468999999987766665 444455665543   111110     11 112355688


Q ss_pred             EEEECCCC-CEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEE
Q 001295          992 HATFSCDS-QLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1067 (1106)
Q Consensus       992 ~l~~s~d~-~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW 1067 (1106)
                      ++++.|.. .+++.......|..+| .+|+.+..+....... +-....-.|-.|+|.+ +|++.++ ++-+..+++
T Consensus       175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~-gl~~~~~QpEGIa~d~-~G~LYIv-sEpNlfy~f  247 (248)
T PF06977_consen  175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFH-GLSKDIPQPEGIAFDP-DGNLYIV-SEPNLFYRF  247 (248)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGG-G-SS---SEEEEEE-T-T--EEEE-ETTTEEEEE
T ss_pred             ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCccc-CcccccCCccEEEECC-CCCEEEE-cCCceEEEe
Confidence            99998854 5566677788899999 7788777666222110 1001123456899998 6755554 454444443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.82  E-value=0.0096  Score=66.93  Aligned_cols=198  Identities=15%  Similarity=0.162  Sum_probs=106.7

Q ss_pred             EEEecCCCEEEEEeCC------------eEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeec
Q 001295          816 FALSKNDSYVMSASGG------------KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV  883 (1106)
Q Consensus       816 l~~s~~~~~l~~~sdg------------~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~  883 (1106)
                      ++.+|.|-.+|...|.            .|+||+... +.+..+.-..+.+.++.|+. +.. |++-..||.+++||+..
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG-~ll~~i~w~~~~iv~~~wt~-~e~-LvvV~~dG~v~vy~~~G  110 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSG-KLLSSIPWDSGRIVGMGWTD-DEE-LVVVQSDGTVRVYDLFG  110 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEECCCC-CEeEEEEECCCCEEEEEECC-CCe-EEEEEcCCEEEEEeCCC
Confidence            4555555555555433            589998764 55555544448899999987 554 44566899999999863


Q ss_pred             ce------EEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccc-cceee-cccCCCC--CCCCCCc-eEEE
Q 001295          884 DE------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQ-KNRFL-QIPTGRT--PTAQSDT-RVQF  952 (1106)
Q Consensus       884 ~~------~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~-~~~~~-~~~~~~~--~~~~~i~-~~~~  952 (1106)
                      ..      .+....-....+....+..+|-.+.  ..++.+.+-  .+.... ..+.+ ..+....  ....... ...+
T Consensus       111 ~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvL--t~~~~~~~v--~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l  186 (410)
T PF04841_consen  111 EFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVL--TGNNRFYVV--NNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLL  186 (410)
T ss_pred             ceeechhhhccccCcccccccccccCCCCEEEE--CCCCeEEEE--eCccccchhhccccCCCcccccccccccccceEe
Confidence            22      1111111223333334444553333  334433332  322211 00011 1111000  0000111 1234


Q ss_pred             cCCCcEEEE-EeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295          953 HQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus       953 s~dg~~l~~-~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
                      +.+....+. ..++.+.+.+....+.   +   ...+++..|++||+|++||.-..+|.+.|...+-.+..+.+.
T Consensus       187 ~~~~~~~i~~~~g~~i~~i~~~~~~~---i---~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~  255 (410)
T PF04841_consen  187 SSDRVVEILLANGETIYIIDENSFKQ---I---DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD  255 (410)
T ss_pred             ecCcceEEEEecCCEEEEEEcccccc---c---cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee
Confidence            445444444 4555566444332211   1   124689999999999999999999999999877777776666

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.80  E-value=0.00025  Score=77.91  Aligned_cols=129  Identities=11%  Similarity=0.097  Sum_probs=90.5

Q ss_pred             cceeeeccCCCCcEEEEEecCCCeEEEEEec----cCc----EEEEecCCcceeEEeeeeeeccCcCCccccccccCCCC
Q 001295          341 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTN----VGD----IGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG  412 (1106)
Q Consensus       341 ~~~~~~~~h~~~v~~~~~sp~g~~llatg~~----dg~----i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~  412 (1106)
                      .++...........++.||-...+.+.|-..    +|.    -.+|++..++.. ...+               +--...
T Consensus       196 lEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klq-rvsv---------------tsipL~  259 (545)
T PF11768_consen  196 LEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQ-RVSV---------------TSIPLP  259 (545)
T ss_pred             EEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCcee-EEEE---------------EEEecC
Confidence            3444445555667888999865554544322    343    446666544322 1111               123456


Q ss_pred             cCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCc
Q 001295          413 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA  492 (1106)
Q Consensus       413 ~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~  492 (1106)
                      ..|.|++++|+.+.|+.|+.||+|++||...+...     +..+.-..+.++|+|+|.  ++++|+..|.+.+||+.-.-
T Consensus       260 s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-----~~ka~~~P~~iaWHp~ga--i~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  260 SQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-----LAKAEFIPTLIAWHPDGA--IFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             CcceEEecCcccceEEEEecCCeEEEEEcCCCeee-----eeeecccceEEEEcCCCc--EEEEEcCCceEEEEEeecCc
Confidence            68999999999999999999999999999876322     223455689999999999  89999999999999986443

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.79  E-value=0.016  Score=59.18  Aligned_cols=187  Identities=9%  Similarity=0.091  Sum_probs=103.5

Q ss_pred             CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEE
Q 001295          349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  428 (1106)
Q Consensus       349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  428 (1106)
                      -.+++..++|+|+...|+|+....+.|...+.+ |+.+.+..                 +.+ -+..-.|++..++.+++
T Consensus        20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~-----------------l~g-~~D~EgI~y~g~~~~vl   80 (248)
T PF06977_consen   20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIP-----------------LDG-FGDYEGITYLGNGRYVL   80 (248)
T ss_dssp             --S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE------------------SS--SSEEEEEE-STTEEEE
T ss_pred             ccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEe-----------------CCC-CCCceeEEEECCCEEEE
Confidence            445799999999988889988888999888864 77765432                 233 24678889988887777


Q ss_pred             EEeCCCeEEEEEccCCce---eeeee--ee--c-cccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCC---CceeEEE
Q 001295          429 VAYSRHIVQIYSYHGGDE---VRQHL--EI--D-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN---GAKQYIF  497 (1106)
Q Consensus       429 s~~~d~~v~iwd~~~~~~---~~~~~--~l--~-~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~---~~~~~~~  497 (1106)
                      +--.++.+.++++.....   .....  .+  . .+...+-.++|.+.++.  |+.+-+..-..|+.+..   +..+...
T Consensus        81 ~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~~~~~~~  158 (248)
T PF06977_consen   81 SEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGGFDLFVS  158 (248)
T ss_dssp             EETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-SS--EEE
T ss_pred             EEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCccceeec
Confidence            666689999999843221   11111  11  1 35567999999999885  44445555555555443   2222211


Q ss_pred             --------eccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCC---------CeeEEEEEecCCC
Q 001295          498 --------EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG---------RWCTTMAYSADGT  558 (1106)
Q Consensus       498 --------~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~s~~~~  558 (1106)
                              ......+.++.+++. .+++++....+..|..+| ..++.+..+....         .....|+|.++|+
T Consensus       159 ~~~~~~~~~~~~~d~S~l~~~p~-t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~  234 (248)
T PF06977_consen  159 DDQDLDDDKLFVRDLSGLSYDPR-TGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN  234 (248)
T ss_dssp             E-HHHH-HT--SS---EEEEETT-TTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--
T ss_pred             cccccccccceeccccceEEcCC-CCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC
Confidence                    123345778888765 457888888899999998 4444443333322         2345566666654

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.78  E-value=0.0034  Score=70.29  Aligned_cols=216  Identities=16%  Similarity=0.157  Sum_probs=118.2

Q ss_pred             CCCeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEE
Q 001295          810 EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK  889 (1106)
Q Consensus       810 ~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~  889 (1106)
                      ...+..+.++|+|++++++++|...|+.....+...     .+.-...+|++ +++ +|+-..+++|.|+.--+.+....
T Consensus        32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~~~~~k~  104 (443)
T PF04053_consen   32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKA-----FGSGLSFVWSS-RNR-YAVLESSSTIKIYKNFKNEVVKS  104 (443)
T ss_dssp             SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEE-----EEE-SEEEE-T-SSE-EEEE-TTS-EEEEETTEE-TT--
T ss_pred             CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccc-----cCceeEEEEec-Ccc-EEEEECCCeEEEEEcCccccceE
Confidence            344788999999999999999999999854433322     23456788988 565 55566688999974333333223


Q ss_pred             ecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEE
Q 001295          890 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAI  969 (1106)
Q Consensus       890 l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i  969 (1106)
                      ++.. ..+..+-.   |.+|...+.+ .|.+||+.+++..     .....     ..|..+.|+++|.+++...+..+.|
T Consensus       105 i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i-----~~i~v-----~~vk~V~Ws~~g~~val~t~~~i~i  169 (443)
T PF04053_consen  105 IKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLI-----RRIDV-----SAVKYVIWSDDGELVALVTKDSIYI  169 (443)
T ss_dssp             ---S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EE-----EEESS------E-EEEEE-TTSSEEEEE-S-SEEE
T ss_pred             EcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHccee-----eEEec-----CCCcEEEEECCCCEEEEEeCCeEEE
Confidence            3322 12333322   8888777665 7999999986542     22221     1478999999999999987888888


Q ss_pred             EecCCc--------------eEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCcee--EEeeCCCcccCC
Q 001295          970 FETTKL--------------ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL--RCRINPSAYLPA 1033 (1106)
Q Consensus       970 ~d~~~~--------------~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~--~~~~~~~~~~~~ 1033 (1106)
                      ++.+..              ..+..+     ...|.+.+|..|  .++..+.. .|+-  +-.|+.  ++.+.       
T Consensus       170 l~~~~~~~~~~~~~g~e~~f~~~~E~-----~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld-------  232 (443)
T PF04053_consen  170 LKYNLEAVAAIPEEGVEDAFELIHEI-----SERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLD-------  232 (443)
T ss_dssp             EEE-HHHHHHBTTTB-GGGEEEEEEE------S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-S-------
T ss_pred             EEecchhcccccccCchhceEEEEEe-----cceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcC-------
Confidence            776544              222221     568999999766  44444444 6665  334433  33332       


Q ss_pred             CCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecC
Q 001295         1034 GVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1071 (1106)
Q Consensus      1034 ~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~ 1071 (1106)
                          ..++  -+.+.+ ..+.+.....|+.|..+.++-
T Consensus       233 ----~~~y--llgy~~-~~~~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  233 ----KPLY--LLGYLP-KENRLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             ----S--E--EEEEET-TTTEEEEE-TT--EEEEE--H
T ss_pred             ----CceE--EEEEEc-cCCEEEEEECCCCEEEEEECH
Confidence                1245  455666 357888888999998887654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.72  E-value=1.2e-05  Score=87.64  Aligned_cols=204  Identities=15%  Similarity=0.242  Sum_probs=127.7

Q ss_pred             CCCCcEEEEEecCCC-eEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc-CCCE
Q 001295          349 QGSSPMSMDFHPVQQ-TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSL  426 (1106)
Q Consensus       349 h~~~v~~~~~sp~g~-~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~  426 (1106)
                      ....+.|++++-+.+ -+++.|..+|.|.+-.+....--                 ...+..+|....++++|++ |...
T Consensus        55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~  117 (783)
T KOG1008|consen   55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNH  117 (783)
T ss_pred             cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHH
Confidence            456677888776544 58999999999999887643221                 1123578888999999999 7788


Q ss_pred             EEEEe----CCCeEEEEEccCC--ceeeeeeeecc-ccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCC-ceeEEEe
Q 001295          427 FGVAY----SRHIVQIYSYHGG--DEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFE  498 (1106)
Q Consensus       427 las~~----~d~~v~iwd~~~~--~~~~~~~~l~~-h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~  498 (1106)
                      ||.|-    .|..+.|||+.++  .+.... .+.+ -.....+++|..+.+  ++.+|...+.+.++|++.. .....+ 
T Consensus       118 LAagldkhrnds~~~Iwdi~s~ltvPke~~-~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~sv-  193 (783)
T KOG1008|consen  118 LAAGLDKHRNDSSLKIWDINSLLTVPKESP-LFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSV-  193 (783)
T ss_pred             HHhhhhhhcccCCccceecccccCCCcccc-ccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhh-
Confidence            88873    4567999999986  221111 1222 345667899998887  7899999999999998732 222222 


Q ss_pred             ccCCCeEEEeccccCCceEEEEEecCCeEEEEe-CCCCCceeEeeCC-----CCeeEEEEEecCCCeEEEeeeccceeEE
Q 001295          499 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL-YDNLGSRVDYEAP-----GRWCTTMAYSADGTRTYQGFRKRSLGVV  572 (1106)
Q Consensus       499 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd-~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~~~~~~~~~~i~~~  572 (1106)
                       .+..+..+.+.|- .+.++++-. ||.|-+|| .++.+.......+     ...+..++|.|...              
T Consensus       194 -nTk~vqG~tVdp~-~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrt--------------  256 (783)
T KOG1008|consen  194 -NTKYVQGITVDPF-SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRT--------------  256 (783)
T ss_pred             -hhhhcccceecCC-CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCc--------------
Confidence             2233444454442 224666555 99999999 4443332211111     11355555555432              


Q ss_pred             EEcCCCCEEEEE-ECCCeEEEEECC
Q 001295          573 QFDTTKNRFLAA-GDDFSIKFWDMD  596 (1106)
Q Consensus       573 ~~~~~~~~l~~~-~~d~~i~iwd~~  596 (1106)
                           | .+++. -..++|+++++.
T Consensus       257 -----g-lla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  257 -----G-LLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             -----c-hhhhhccCcceEEEeccc
Confidence                 1 23333 356788998874

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.70  E-value=0.022  Score=61.02  Aligned_cols=287  Identities=14%  Similarity=0.094  Sum_probs=135.2

Q ss_pred             EEEEcCCCceEEEeec-CceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEE
Q 001295          748 RLIFTNSGNAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVM  826 (1106)
Q Consensus       748 ~~~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~  826 (1106)
                      .=+|.++|+.|+.+++ +|.-.+|-+                    |+.++...+.  ... .........++++.+.++
T Consensus        40 ~~~ft~dG~kllF~s~~dg~~nly~l--------------------DL~t~~i~QL--Tdg-~g~~~~g~~~s~~~~~~~   96 (386)
T PF14583_consen   40 QNCFTDDGRKLLFASDFDGNRNLYLL--------------------DLATGEITQL--TDG-PGDNTFGGFLSPDDRALY   96 (386)
T ss_dssp             S--B-TTS-EEEEEE-TTSS-EEEEE--------------------ETTT-EEEE-----S-S-B-TTT-EE-TTSSEEE
T ss_pred             CCCcCCCCCEEEEEeccCCCcceEEE--------------------EcccCEEEEC--ccC-CCCCccceEEecCCCeEE
Confidence            3467889987777666 555444433                    3334443332  110 111122456778888877


Q ss_pred             EEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEec-CCCceEEEee---C-------------------CCcEEEEEee
Q 001295          827 SAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHP-QDNNIIAIGM---D-------------------DSSIQIYNVR  882 (1106)
Q Consensus       827 ~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~-~d~~~la~g~---~-------------------dg~v~iwd~~  882 (1106)
                      ... +..|+-.|+++.+....+.....-+-...|.. .|+..++-.-   .                   ...|...|+.
T Consensus        97 Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~  176 (386)
T PF14583_consen   97 YVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLK  176 (386)
T ss_dssp             EEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETT
T ss_pred             EEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECC
Confidence            655 57899999998876655655555554455542 2455443221   1                   1235555667


Q ss_pred             cceEEEEecCcccCeeEEEEecCCCEEEEEc----CCCc-EEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCc
Q 001295          883 VDEVKSKLKGHSKRITGLAFSHALNVLVSSG----ADSQ-LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI  957 (1106)
Q Consensus       883 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s----~Dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~  957 (1106)
                      +|+....+. -..-+..+.|||....++.=+    .|.. -|||-+.+.......+.....     ...+..=-|.|||.
T Consensus       177 tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~-----~e~~gHEfw~~DG~  250 (386)
T PF14583_consen  177 TGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRME-----GESVGHEFWVPDGS  250 (386)
T ss_dssp             T--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---T-----TEEEEEEEE-TTSS
T ss_pred             CCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCC-----CcccccccccCCCC
Confidence            776544443 344567789999765555433    3332 367765543222211111111     12445668999999


Q ss_pred             EEEE-Ee-----CCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCC----------------eEEEEE
Q 001295          958 HFLV-VH-----ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA----------------TVCVFS 1015 (1106)
Q Consensus       958 ~l~~-~~-----d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg----------------~i~vwd 1015 (1106)
                      .|.. +.     +..|.-+|..+++......    ..+-..+..++||++++-=+.|.                -|++++
T Consensus       251 ~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~----~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~  326 (386)
T PF14583_consen  251 TIWYDSYTPGGQDFWIAGYDPDTGERRRLME----MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFD  326 (386)
T ss_dssp             -EEEEEEETTT--EEEEEE-TTT--EEEEEE----E-SEEEEEE-TTSSEEEEEE-------------------EEEEEE
T ss_pred             EEEEEeecCCCCceEEEeeCCCCCCceEEEe----CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEec
Confidence            8876 32     3357788998886644322    22455677789999887544432                577788


Q ss_pred             cCCceeEEeeCC-Cccc-CCCCCCCCccceEEEEeCCCCCE-EEEEeCCCcEEEEeec
Q 001295         1016 AANLKLRCRINP-SAYL-PAGVSSSNVHPLVIAAHPQEPNE-FALGLSDGGVHVFEPL 1070 (1106)
Q Consensus      1016 ~~~~~~~~~~~~-~~~~-~~~~~~~~v~~~~~~~~~~d~~~-l~t~~~Dg~v~vW~~~ 1070 (1106)
                      +..++......- ..+. -.++ .. +.--...|+|+ ++. |.++...|...|+-++
T Consensus       327 ~~~~~~~~l~~h~~sw~v~~~~-~q-~~hPhp~FSPD-gk~VlF~Sd~~G~~~vY~v~  381 (386)
T PF14583_consen  327 VEAGRFRKLARHDTSWKVLDGD-RQ-VTHPHPSFSPD-GKWVLFRSDMEGPPAVYLVE  381 (386)
T ss_dssp             TTTTEEEEEEE-------BTTB-SS-TT----EE-TT-SSEEEEEE-TTSS-EEEEEE
T ss_pred             cccCceeeeeeccCcceeecCC-Cc-cCCCCCccCCC-CCEEEEECCCCCCccEEEEe
Confidence            887765422210 0011 1111 11 11125899994 555 5677778877776554

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.70  E-value=0.012  Score=65.65  Aligned_cols=207  Identities=13%  Similarity=0.128  Sum_probs=145.0

Q ss_pred             CeeEEEEecCCCEEEEEe--CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeC---CCcEEEEEeecceE
Q 001295          812 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD---DSSIQIYNVRVDEV  886 (1106)
Q Consensus       812 ~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~---dg~v~iwd~~~~~~  886 (1106)
                      ....+++++.+..+....  ++.|.+.|..+.+......... ....+++++ +++.+.++..   ++++.+.|..+++.
T Consensus        75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~  152 (381)
T COG3391          75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKV  152 (381)
T ss_pred             cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeE
Confidence            345688888888665554  6899999988777666654222 678899999 5655544443   68999999998888


Q ss_pred             EEEecCcccCeeEEEEecCCCEEEEEc-CCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE--e
Q 001295          887 KSKLKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--H  963 (1106)
Q Consensus       887 ~~~l~~h~~~V~~l~~s~d~~~l~s~s-~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~--~  963 (1106)
                      +.....-..+ ..++++|+|..+..+. .++.|.+.|..+.....    ...............+.++|+|.++.+.  .
T Consensus       153 ~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~----~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~  227 (381)
T COG3391         153 TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR----GSVGSLVGVGTGPAGIAVDPDGNRVYVANDG  227 (381)
T ss_pred             EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec----cccccccccCCCCceEEECCCCCEEEEEecc
Confidence            8775443344 8899999999665554 78899999977643221    0000001111355889999999977773  2


Q ss_pred             C--CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcC-CeEEEEEcCCceeEEeeC
Q 001295          964 E--TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-ATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus       964 d--~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~D-g~i~vwd~~~~~~~~~~~ 1026 (1106)
                      +  +.+...|..++.....-...+-. ....+.++|+|+++.+.... +.+.+-|..+......+.
T Consensus       228 ~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~  292 (381)
T COG3391         228 SGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP  292 (381)
T ss_pred             CCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence            2  58999999988877652221222 56778999999998877444 889999999988877655

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.63  E-value=0.0011  Score=73.89  Aligned_cols=185  Identities=13%  Similarity=0.109  Sum_probs=117.0

Q ss_pred             CCCeeEEEEecCCCEEEEEe---CC--eEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCc--EEEEEee
Q 001295          810 EEAVPCFALSKNDSYVMSAS---GG--KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSS--IQIYNVR  882 (1106)
Q Consensus       810 ~~~v~~l~~s~~~~~l~~~s---dg--~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~--v~iwd~~  882 (1106)
                      ...+..-+|+|+++.++..+   .+  .+.++++.+++...... ..+.-..-+|||++.+++++...||.  |+++|+.
T Consensus       192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~  270 (425)
T COG0823         192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLD  270 (425)
T ss_pred             CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence            45566678999999877664   23  49999999877655544 33445567899954555566667774  5566766


Q ss_pred             cceEEEEecCcccCeeEEEEecCCCEEEEEcC-CCc--EEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEE
Q 001295          883 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGA-DSQ--LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF  959 (1106)
Q Consensus       883 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-Dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l  959 (1106)
                      ++. +..+..-.+.-+.=.|+|||++|+-.+. .|.  |.+.+.+....  . .+. ..+.     .-..-.+||||+++
T Consensus       271 ~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~--~-riT-~~~~-----~~~~p~~SpdG~~i  340 (425)
T COG0823         271 GKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV--T-RLT-FSGG-----GNSNPVWSPDGDKI  340 (425)
T ss_pred             CCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce--e-Eee-ccCC-----CCcCccCCCCCCEE
Confidence            665 3345544444446789999999887654 444  55556665433  1 111 1111     11377899999999


Q ss_pred             EEEe--CCe--EEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcC
Q 001295          960 LVVH--ETQ--LAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD 1008 (1106)
Q Consensus       960 ~~~~--d~~--v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~D 1008 (1106)
                      +...  ++.  |.++|+.++..++.+.   +........|.++|+.+...+.-
T Consensus       341 ~~~~~~~g~~~i~~~~~~~~~~~~~lt---~~~~~e~ps~~~ng~~i~~~s~~  390 (425)
T COG0823         341 VFESSSGGQWDIDKNDLASGGKIRILT---STYLNESPSWAPNGRMIMFSSGQ  390 (425)
T ss_pred             EEEeccCCceeeEEeccCCCCcEEEcc---ccccCCCCCcCCCCceEEEeccC
Confidence            9843  454  7777777666444432   23444566788888887765533

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.61  E-value=0.15  Score=59.60  Aligned_cols=149  Identities=12%  Similarity=0.079  Sum_probs=87.4

Q ss_pred             cEEEEEeecceEEEEecCcccCeeE---------EEEecCCC---EEEEEcCCCcEEEEeCCCcccccceee--------
Q 001295          875 SIQIYNVRVDEVKSKLKGHSKRITG---------LAFSHALN---VLVSSGADSQLCVWSSDGWEKQKNRFL--------  934 (1106)
Q Consensus       875 ~v~iwd~~~~~~~~~l~~h~~~V~~---------l~~s~d~~---~l~s~s~Dg~i~vwd~~~~~~~~~~~~--------  934 (1106)
                      +|.-.|+++|+..-.++.....+..         +....+|+   .++.+..+|.+.+.|-.+++.......        
T Consensus       272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~  351 (527)
T TIGR03075       272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWAT  351 (527)
T ss_pred             eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCccccc
Confidence            5666788899888766542221211         22224666   788999999999999999876311000        


Q ss_pred             --cccCCCCC---------------------CCCC--CceEEEcCCCcEEEE-EeC------------------------
Q 001295          935 --QIPTGRTP---------------------TAQS--DTRVQFHQDQIHFLV-VHE------------------------  964 (1106)
Q Consensus       935 --~~~~~~~~---------------------~~~~--i~~~~~s~dg~~l~~-~~d------------------------  964 (1106)
                        ....+...                     ..+.  =..++++|+..++.+ ..+                        
T Consensus       352 ~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~  431 (527)
T TIGR03075       352 GVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLT  431 (527)
T ss_pred             ccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccc
Confidence              00000000                     0000  012567776665554 111                        


Q ss_pred             ---------CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295          965 ---------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus       965 ---------~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
                               +.|.-+|+.+++.+-......  ....+. +.-.+.+++.++.||.++.+|..||+.+-+..
T Consensus       432 ~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~--p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~  499 (527)
T TIGR03075       432 IKPPPDDHMGSLIAWDPITGKIVWEHKEDF--PLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFK  499 (527)
T ss_pred             cCCCCCCCceeEEEEeCCCCceeeEecCCC--CCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEe
Confidence                     357788888887765543211  111111 12255577778889999999999999998877

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.56  E-value=0.0037  Score=69.81  Aligned_cols=161  Identities=16%  Similarity=0.152  Sum_probs=95.4

Q ss_pred             CCCCcEEEEEecCCCeEEEEEecc---CcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCC
Q 001295          349 QGSSPMSMDFHPVQQTLLLVGTNV---GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  425 (1106)
Q Consensus       349 h~~~v~~~~~sp~g~~llatg~~d---g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~  425 (1106)
                      ....+..-+|+|+++.+....-..   ..+.++|+++++.....+                 +.+   .-..-+|||||+
T Consensus       191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-----------------~~g---~~~~P~fspDG~  250 (425)
T COG0823         191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-----------------FNG---NNGAPAFSPDGS  250 (425)
T ss_pred             cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-----------------cCC---ccCCccCCCCCC
Confidence            567788889999999754443333   349999999887654321                 122   344568999999


Q ss_pred             EEEEEe-CCCe--EEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCc--EEEEeCCCCceeEEEecc
Q 001295          426 LFGVAY-SRHI--VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT--IKVWDATNGAKQYIFEGH  500 (1106)
Q Consensus       426 ~las~~-~d~~--v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~--i~iwd~~~~~~~~~~~~h  500 (1106)
                      +||.+. .||.  |.+.|+.++...+    +..-.+.-..=.|+|||+. ++.+.+..|.  |.+.|.+.+.. ..+...
T Consensus       251 ~l~f~~~rdg~~~iy~~dl~~~~~~~----Lt~~~gi~~~Ps~spdG~~-ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~  324 (425)
T COG0823         251 KLAFSSSRDGSPDIYLMDLDGKNLPR----LTNGFGINTSPSWSPDGSK-IVFTSDRGGRPQIYLYDLEGSQV-TRLTFS  324 (425)
T ss_pred             EEEEEECCCCCccEEEEcCCCCccee----cccCCccccCccCCCCCCE-EEEEeCCCCCcceEEECCCCCce-eEeecc
Confidence            998764 4554  6666777766332    3333333346789999997 3445555565  44455554443 333322


Q ss_pred             CCCeEEEeccccCCceEEEEEec-CCe--EEEEeCCCCCc
Q 001295          501 EAPVYSVCPHHKENIQFIFSTAL-DGK--IKAWLYDNLGS  537 (1106)
Q Consensus       501 ~~~v~~~~~~~~~~~~~l~s~~~-dg~--i~iwd~~~~~~  537 (1106)
                      .+.-..-.|  +++|++++..+. +|.  |.+.|+.+...
T Consensus       325 ~~~~~~p~~--SpdG~~i~~~~~~~g~~~i~~~~~~~~~~  362 (425)
T COG0823         325 GGGNSNPVW--SPDGDKIVFESSSGGQWDIDKNDLASGGK  362 (425)
T ss_pred             CCCCcCccC--CCCCCEEEEEeccCCceeeEEeccCCCCc
Confidence            222223344  456667776664 344  55555555443

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.54  E-value=0.18  Score=56.75  Aligned_cols=137  Identities=18%  Similarity=0.231  Sum_probs=77.6

Q ss_pred             EEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCc-c
Q 001295          817 ALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH-S  894 (1106)
Q Consensus       817 ~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h-~  894 (1106)
                      .++.+....+... ++.+.+.+....+.   +. ..+++..+++|| ++++||.-..+|.+.|.+..-.+.+..+.-. .
T Consensus       185 ~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSp-ng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~  259 (410)
T PF04841_consen  185 LLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSP-NGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSK  259 (410)
T ss_pred             EeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECC-CCCEEEEEECCCCEEEEECcccceeEEeecCcC
Confidence            3445555555444 56666555433211   22 346799999999 9999999999999999886655566555443 3


Q ss_pred             cCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCC
Q 001295          895 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTK  974 (1106)
Q Consensus       895 ~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~  974 (1106)
                      .....+.|.-+...++.-  ...|.+.....                      ..+.|.-++..++...-..++|+.-+.
T Consensus       260 ~~p~~~~WCG~dav~l~~--~~~l~lvg~~~----------------------~~~~~~~~~~~~l~~E~DG~riit~~~  315 (410)
T PF04841_consen  260 SPPKQMAWCGNDAVVLSW--EDELLLVGPDG----------------------DSISFWYDGPVILVSEIDGVRIITSTS  315 (410)
T ss_pred             CCCcEEEEECCCcEEEEe--CCEEEEECCCC----------------------CceEEeccCceEEeccCCceEEEeCCc
Confidence            345566665432222221  22233332111                      234454455544445444578877666


Q ss_pred             ceEeeecc
Q 001295          975 LECVKQWV  982 (1106)
Q Consensus       975 ~~~~~~~~  982 (1106)
                      .+.+....
T Consensus       316 ~~~l~~Vp  323 (410)
T PF04841_consen  316 HEFLQRVP  323 (410)
T ss_pred             eEEEEECC
Confidence            66655543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.50  E-value=0.051  Score=58.18  Aligned_cols=234  Identities=11%  Similarity=0.122  Sum_probs=133.4

Q ss_pred             CCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEeCCe
Q 001295          753 NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGK  832 (1106)
Q Consensus       753 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~  832 (1106)
                      ..++.|+.|+++| +.++++..                     .......     .....|..+...++-+.+++-+|+.
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~---------------------~~~~~~i-----~~~~~I~ql~vl~~~~~llvLsd~~   57 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSD---------------------PSKPTRI-----LKLSSITQLSVLPELNLLLVLSDGQ   57 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecC---------------------CccceeE-----eecceEEEEEEecccCEEEEEcCCc
Confidence            4567789998888 77777621                     0001110     1344499999999999999999999


Q ss_pred             EEEEEcCCCceeeee--------------cCCCCCeeEEE--EecCCCceEEEeeCCCcEEEEEeecc-----eEEEEec
Q 001295          833 ISLFNMMTFKTMATF--------------MPPPPAATFLA--FHPQDNNIIAIGMDDSSIQIYNVRVD-----EVKSKLK  891 (1106)
Q Consensus       833 i~vwd~~~~~~~~~~--------------~~~~~~v~~l~--~s~~d~~~la~g~~dg~v~iwd~~~~-----~~~~~l~  891 (1106)
                      +.++++.........              ......+...+  -...+..+|+++. ...|.+|.....     +..+++.
T Consensus        58 l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~  136 (275)
T PF00780_consen   58 LYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEIS  136 (275)
T ss_pred             cEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEE
Confidence            999998764443311              01122344444  1121345555554 458999888753     3455554


Q ss_pred             CcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCC-----CCCCCCCceEEEcCCCcEEEEEeCCe
Q 001295          892 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR-----TPTAQSDTRVQFHQDQIHFLVVHETQ  966 (1106)
Q Consensus       892 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~s~dg~~l~~~~d~~  966 (1106)
                      - ...+.+++|.  ++.|+.|..++ ..+.|+.++....  ........     .........+.--+++.+|++ .+..
T Consensus       137 l-p~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~-~~~~  209 (275)
T PF00780_consen  137 L-PDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSE--LLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLC-YDNI  209 (275)
T ss_pred             c-CCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceE--EeCccCCcchhhhcccCCCceEEEEeCCceEEEE-ecce
Confidence            3 3678899998  56777777665 7888998754322  11111100     000011222333334555554 3333


Q ss_pred             EEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295          967 LAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus       967 v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
                      -.+.|. .|+..+.... .-...+.++++  ...||++.+. +.|.||++.++++++.+.
T Consensus       210 g~fv~~-~G~~~r~~~i-~W~~~p~~~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ~i~  264 (275)
T PF00780_consen  210 GVFVNK-NGEPSRKSTI-QWSSAPQSVAY--SSPYLIAFSS-NSIEVRSLETGELVQTIP  264 (275)
T ss_pred             EEEEcC-CCCcCcccEE-EcCCchhEEEE--ECCEEEEECC-CEEEEEECcCCcEEEEEE
Confidence            333343 3333221000 11345667776  3458776654 569999999999998876

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.46  E-value=0.11  Score=59.33  Aligned_cols=245  Identities=14%  Similarity=0.133  Sum_probs=123.5

Q ss_pred             CcEEEEEecCCCeEEEEEeccC----cEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEE
Q 001295          352 SPMSMDFHPVQQTLLLVGTNVG----DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF  427 (1106)
Q Consensus       352 ~v~~~~~sp~g~~llatg~~dg----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l  427 (1106)
                      .+...++||||++++++-+..|    .|+|.|+++|+.+.. .+                 ..  ..-..++|.+|++.|
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~i-----------------~~--~~~~~~~W~~d~~~~  184 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-GI-----------------EN--PKFSSVSWSDDGKGF  184 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-EE-----------------EE--EESEEEEECTTSSEE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-cc-----------------cc--cccceEEEeCCCCEE
Confidence            3446789999998666656655    499999999977653 11                 11  112239999999888


Q ss_pred             EEEeCC-----------CeEEEEEccCCceeeeeeeeccccCC--eeEEEEcCCCCceEEEEecC-C-CcEEEEeCCCC-
Q 001295          428 GVAYSR-----------HIVQIYSYHGGDEVRQHLEIDAHVGG--VNDIAFSHPNKQLCVITCGD-D-KTIKVWDATNG-  491 (1106)
Q Consensus       428 as~~~d-----------~~v~iwd~~~~~~~~~~~~l~~h~~~--V~~~~~s~d~~~~~l~s~~~-d-~~i~iwd~~~~-  491 (1106)
                      .....+           ..|..|++.++..-. ...+.+....  ...+..++|++.+++.+.+. + ..+.+-|+..+ 
T Consensus       185 ~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~  263 (414)
T PF02897_consen  185 FYTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG  263 (414)
T ss_dssp             EEEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT
T ss_pred             EEEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC
Confidence            776533           247888887764321 1234443333  57888999999633323332 2 35778888765 


Q ss_pred             ---ceeEEEeccCCCe-EEEeccccCCceEEEEEe---cCCeEEEEeCCCCCc---eeEeeCCCCeeEEEEEecCCCeEE
Q 001295          492 ---AKQYIFEGHEAPV-YSVCPHHKENIQFIFSTA---LDGKIKAWLYDNLGS---RVDYEAPGRWCTTMAYSADGTRTY  561 (1106)
Q Consensus       492 ---~~~~~~~~h~~~v-~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~~~  561 (1106)
                         .....+......+ ..+...  .+ .+++...   ..+.|...++.....   ...+..+...              
T Consensus       264 ~~~~~~~~l~~~~~~~~~~v~~~--~~-~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~--------------  326 (414)
T PF02897_consen  264 SPDAKPKLLSPREDGVEYYVDHH--GD-RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDED--------------  326 (414)
T ss_dssp             TSS-SEEEEEESSSS-EEEEEEE--TT-EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSS--------------
T ss_pred             CCcCCcEEEeCCCCceEEEEEcc--CC-EEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCc--------------
Confidence               2333333333333 333321  22 3333332   235566666665442   1111112111              


Q ss_pred             EeeeccceeEEEEcCCCCEEEEE-EC--CCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEe--C--CCcE
Q 001295          562 QGFRKRSLGVVQFDTTKNRFLAA-GD--DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST--N--DNGI  634 (1106)
Q Consensus       562 ~~~~~~~i~~~~~~~~~~~l~~~-~~--d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~--~--dg~i  634 (1106)
                             .....+...+++|+.. ..  ...|+++++..+.....+.... ...|..+...+++..+....  .  -+++
T Consensus       327 -------~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~-~g~v~~~~~~~~~~~~~~~~ss~~~P~~~  398 (414)
T PF02897_consen  327 -------VSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPE-AGSVSGVSGDFDSDELRFSYSSFTTPPTV  398 (414)
T ss_dssp             -------EEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSS-SSEEEEEES-TT-SEEEEEEEETTEEEEE
T ss_pred             -------eeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCc-ceEEeccCCCCCCCEEEEEEeCCCCCCEE
Confidence                   1111122223344443 23  3468889998344444444332 12344555455555444322  2  3567


Q ss_pred             EEEEccCC
Q 001295          635 KILATSDG  642 (1106)
Q Consensus       635 ~iwd~~~~  642 (1106)
                      ..||+.++
T Consensus       399 y~~d~~t~  406 (414)
T PF02897_consen  399 YRYDLATG  406 (414)
T ss_dssp             EEEETTTT
T ss_pred             EEEECCCC
Confidence            77787776

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.46  E-value=0.11  Score=58.12  Aligned_cols=241  Identities=15%  Similarity=0.158  Sum_probs=155.7

Q ss_pred             CeeEEEEecCCCEEEEEe--CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEE
Q 001295          812 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK  889 (1106)
Q Consensus       812 ~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~  889 (1106)
                      ....+.+.+++..+....  ...+...+................-..+++++.+.+..+....++.|.+.|..+.+....
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~  111 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS  111 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence            455678888886555554  234555555421111111111134567788884455777777779999999877766655


Q ss_pred             ecCcccCeeEEEEecCCCEEEEEcC---CCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE--eC
Q 001295          890 LKGHSKRITGLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE  964 (1106)
Q Consensus       890 l~~h~~~V~~l~~s~d~~~l~s~s~---Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~--~d  964 (1106)
                      ..--. .-..++++++++.+..+..   ++++.+.|-.+.+....    ...+.     ....++++|+|..+.+.  .+
T Consensus       112 ~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~----~~vG~-----~P~~~a~~p~g~~vyv~~~~~  181 (381)
T COG3391         112 IPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT----IPVGN-----TPTGVAVDPDGNKVYVTNSDD  181 (381)
T ss_pred             eeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE----EecCC-----CcceEEECCCCCeEEEEecCC
Confidence            43222 4578999999987776655   67788888777543222    22232     22889999999988874  58


Q ss_pred             CeEEEEecCCceEeeeccc---CCCCCCeeEEEECCCCCEEEEEEcC---CeEEEEEcCCceeEEeeCCCcccCCCCCCC
Q 001295          965 TQLAIFETTKLECVKQWVP---RESSAPITHATFSCDSQLVYACFLD---ATVCVFSAANLKLRCRINPSAYLPAGVSSS 1038 (1106)
Q Consensus       965 ~~v~i~d~~~~~~~~~~~~---~~h~~~v~~l~~s~d~~~l~t~s~D---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1106)
                      +.|.+.|..+....+ ...   -.-......+.++|||.++......   +.+.+.|..++.....-...        ..
T Consensus       182 ~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~--------~~  252 (381)
T COG3391         182 NTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPV--------GS  252 (381)
T ss_pred             CeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccc--------cc
Confidence            999999987776664 110   0113455788999999987666544   58999999998877652211        11


Q ss_pred             CccceEEEEeCCCCCEEEEEe-CCCcEEEEeecCCC
Q 001295         1039 NVHPLVIAAHPQEPNEFALGL-SDGGVHVFEPLESE 1073 (1106)
Q Consensus      1039 ~v~~~~~~~~~~d~~~l~t~~-~Dg~v~vW~~~~~~ 1073 (1106)
                      . .+..+.+.| +|..+.+.. ..+.+.+-|-.+..
T Consensus       253 ~-~~~~v~~~p-~g~~~yv~~~~~~~V~vid~~~~~  286 (381)
T COG3391         253 G-APRGVAVDP-AGKAAYVANSQGGTVSVIDGATDR  286 (381)
T ss_pred             C-CCCceeECC-CCCEEEEEecCCCeEEEEeCCCCc
Confidence            1 344688889 577776664 44788888877755

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.39  E-value=0.0013  Score=68.68  Aligned_cols=110  Identities=10%  Similarity=0.160  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHhHhcHHHHHHHHHHhhCCCcc----------HHHHHHHHhcCCHHHHHHHhcccc-cccCccccchhhh
Q 001295            6 RELVFLILQFLDEEKFKETVHKLEQESGFFFN----------MKYFEDEVHNGNWDDVEKYLSGFT-KVDDNRYSMKIFF   74 (1106)
Q Consensus         6 ~~~~~li~q~L~~~g~~~s~~~L~~Esg~~~~----------~~~~~~~i~~g~w~~~~~~l~~~~-~~~~~~~~~~~~~   74 (1106)
                      +.+..+|..++...|..+.+..|-+|+|...+          +.++-+++.+|+-.-|++.+.... .+.+.  ...+.|
T Consensus       117 ~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~--~s~LE~  194 (394)
T KOG2817|consen  117 QVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEK--SSSLEF  194 (394)
T ss_pred             HHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccc--cccHHH
Confidence            34689999999999999999999999999853          788899999999999998886532 11111  234999


Q ss_pred             HHHHHHHHHHHhCCCHH--HHHHHHHhhcccccccCHHHHHHHHH
Q 001295           75 EIRKQKYLEALDKHDRA--KAVEILVKDLKVFSTFNEELFKEITQ  117 (1106)
Q Consensus        75 ~i~~q~~lEll~~~~~~--~A~~~l~~~l~~l~~~~~~~~~~l~~  117 (1106)
                      .+..+.|++++..|...  +|++..|+.++|+...+..+++.|--
T Consensus       195 ~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~  239 (394)
T KOG2817|consen  195 KLHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKLMG  239 (394)
T ss_pred             HHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHH
Confidence            99999999999999888  99999999999996655444554433

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.38  E-value=0.033  Score=65.27  Aligned_cols=148  Identities=13%  Similarity=0.053  Sum_probs=87.8

Q ss_pred             CCCeeEEEEecCCCceEEEee------CCC--cEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCC-CcEEEE
Q 001295          851 PPAATFLAFHPQDNNIIAIGM------DDS--SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD-SQLCVW  921 (1106)
Q Consensus       851 ~~~v~~l~~s~~d~~~la~g~------~dg--~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D-g~i~vw  921 (1106)
                      ...+...++|| +++.+|...      .|+  .|.+++. .+.......+.  ..+.-.|+|||+.|++.... ..+++.
T Consensus       349 ~~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~  424 (591)
T PRK13616        349 MGNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVI  424 (591)
T ss_pred             ccCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEe
Confidence            34678999999 777666554      244  4555554 23322222332  37889999999988877533 222222


Q ss_pred             -----------eCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEE---EecCCceEeee-----cc
Q 001295          922 -----------SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAI---FETTKLECVKQ-----WV  982 (1106)
Q Consensus       922 -----------d~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i---~d~~~~~~~~~-----~~  982 (1106)
                                 +++.++...           .....|..+.|||||+.++...+++|.+   -....|. ...     +.
T Consensus       425 ~~~~~gql~~~~vd~ge~~~-----------~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~-~~l~~~~~l~  492 (591)
T PRK13616        425 RDPATGQLARTPVDASAVAS-----------RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ-YALTNPREVG  492 (591)
T ss_pred             ccCCCceEEEEeccCchhhh-----------ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc-eeecccEEee
Confidence                       333322110           1124689999999999999966788877   4444443 111     11


Q ss_pred             cCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEc
Q 001295          983 PRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1016 (1106)
Q Consensus       983 ~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~ 1016 (1106)
                       .+-...+.++.|..++.++ ++..++...+|.+
T Consensus       493 -~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v  524 (591)
T PRK13616        493 -PGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV  524 (591)
T ss_pred             -cccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence             1223346889999999865 4555555555554

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.29  E-value=0.00014  Score=79.66  Aligned_cols=199  Identities=13%  Similarity=0.174  Sum_probs=131.5

Q ss_pred             CCCeeEEEEecCC--CEEEEEe-CCeEEEEEcCCCcee--eeecCCCCCeeEEEEecCCCceEEEee----CCCcEEEEE
Q 001295          810 EEAVPCFALSKND--SYVMSAS-GGKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGM----DDSSIQIYN  880 (1106)
Q Consensus       810 ~~~v~~l~~s~~~--~~l~~~s-dg~i~vwd~~~~~~~--~~~~~~~~~v~~l~~s~~d~~~la~g~----~dg~v~iwd  880 (1106)
                      ...+.|++..-+.  -.+++|. +|.|.+-........  ....++....++++|++-|..+||.|-    .|..+.|||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            3445666655443  3667776 799888877643322  334566778999999998888999874    456899999


Q ss_pred             eecc--eE--EEEecC-cccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcC-
Q 001295          881 VRVD--EV--KSKLKG-HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ-  954 (1106)
Q Consensus       881 ~~~~--~~--~~~l~~-h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-  954 (1106)
                      +.++  -+  -..|.+ -.....+++|-.|.+++.+|...+.+.++|++...... ..+.+        ..+..+..+| 
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~-~svnT--------k~vqG~tVdp~  206 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSV-SSVNT--------KYVQGITVDPF  206 (783)
T ss_pred             cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhh-hhhhh--------hhcccceecCC
Confidence            9876  11  122222 33456689999999999999999999999987321111 11111        2457788899 


Q ss_pred             CCcEEEEEeCCeEEEEe-cCCceE-eeecccC--CCCCCeeEEEECCCCC-EEEEEEcC-CeEEEEEcC
Q 001295          955 DQIHFLVVHETQLAIFE-TTKLEC-VKQWVPR--ESSAPITHATFSCDSQ-LVYACFLD-ATVCVFSAA 1017 (1106)
Q Consensus       955 dg~~l~~~~d~~v~i~d-~~~~~~-~~~~~~~--~h~~~v~~l~~s~d~~-~l~t~s~D-g~i~vwd~~ 1017 (1106)
                      .+.|++...|+.|.+|| ..+-+- +..+...  .-...+..++|+|... .|++.+.| ++|+.+|+.
T Consensus       207 ~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  207 SPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             CCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            88999998899999999 333222 2222110  0123489999999554 45555555 689999874

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.27  E-value=0.008  Score=71.03  Aligned_cols=150  Identities=12%  Similarity=0.120  Sum_probs=97.1

Q ss_pred             CCceEEEEecCCCcEEEEeCCCCceeEEEeccCCC-eEEEecccc---CCceEEEEEecCCeEEEEeCCCCCceeE-eeC
Q 001295          469 NKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP-VYSVCPHHK---ENIQFIFSTALDGKIKAWLYDNLGSRVD-YEA  543 (1106)
Q Consensus       469 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~-v~~~~~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~  543 (1106)
                      .+.++|........|+-.|++.|+.+..+..|... |..++-...   -+....+.|-.++.+..||.+-.+.... -..
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~  571 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS  571 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence            34434555566788999999999999999988755 777652211   0124567788899999999986432111 000


Q ss_pred             CCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCC
Q 001295          544 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC  623 (1106)
Q Consensus       544 ~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~  623 (1106)
                      +.                 ......+.|++-+.+| +||+|+.+|.||+||-...+....+.+-+  .+|..|..+.||+
T Consensus       572 k~-----------------Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG--~pI~~iDvt~DGk  631 (794)
T PF08553_consen  572 KQ-----------------YSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLG--DPIIGIDVTADGK  631 (794)
T ss_pred             cc-----------------cccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCC--CCeeEEEecCCCc
Confidence            00                 0111234444444443 49999999999999954333333344333  4799999999999


Q ss_pred             EEEEEeCCCcEEEEEc
Q 001295          624 LLAVSTNDNGIKILAT  639 (1106)
Q Consensus       624 ~l~~~~~dg~i~iwd~  639 (1106)
                      ++++.+. ..+.+++.
T Consensus       632 wilaTc~-tyLlLi~t  646 (794)
T PF08553_consen  632 WILATCK-TYLLLIDT  646 (794)
T ss_pred             EEEEeec-ceEEEEEE
Confidence            9887665 57777775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.26  E-value=0.013  Score=68.48  Aligned_cols=188  Identities=12%  Similarity=0.059  Sum_probs=104.3

Q ss_pred             CCeeEEEEecCCCEEEEEe-------CC--eEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCC--------
Q 001295          811 EAVPCFALSKNDSYVMSAS-------GG--KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD--------  873 (1106)
Q Consensus       811 ~~v~~l~~s~~~~~l~~~s-------dg--~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~d--------  873 (1106)
                      ..+...+++|||+.++...       |.  .|.+++... .. ..+.. ....+.-.|+| ++..|++....        
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~-g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLE-GHSLTRPSWSL-DADAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeec-CCCCCCceECC-CCCceEEEecCcceEEEec
Confidence            3578899999999887654       32  466666532 22 22221 22478899999 77766665422        


Q ss_pred             ----CcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEE---EeCCCcccccceeecccCCCCCCCCC
Q 001295          874 ----SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCV---WSSDGWEKQKNRFLQIPTGRTPTAQS  946 (1106)
Q Consensus       874 ----g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~v---wd~~~~~~~~~~~~~~~~~~~~~~~~  946 (1106)
                          +.+++.++..++...   ...+.|..+.|||||..|+... ++.|.+   -....++...........+..   ..
T Consensus       426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~---~~  498 (591)
T PRK13616        426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG---DT  498 (591)
T ss_pred             cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC---Cc
Confidence                233333444433322   2345799999999999988766 467776   343344311111111211111   23


Q ss_pred             CceEEEcCCCcEEEEEeCC--eEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEE
Q 001295          947 DTRVQFHQDQIHFLVVHET--QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVC 1012 (1106)
Q Consensus       947 i~~~~~s~dg~~l~~~~d~--~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~ 1012 (1106)
                      +..+.|..++.+++...++  .+...++..... ..+.......++.+|+=+++  .|+.+..+|.+.
T Consensus       499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~-~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~  563 (591)
T PRK13616        499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNS-DALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ  563 (591)
T ss_pred             cccceEecCCEEEEEecCCCCceEEEecCCccc-cccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence            5789999999976554333  344444442222 12222223567777777653  344455565433

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.19  E-value=0.0016  Score=71.68  Aligned_cols=94  Identities=18%  Similarity=0.434  Sum_probs=73.0

Q ss_pred             CCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeE-EEEEccCCCEEE
Q 001295          350 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN-RVIWSPDGSLFG  428 (1106)
Q Consensus       350 ~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~-~l~~spdg~~la  428 (1106)
                      .-.|..+.|+|.-. |+|++..+|.|.+..+. .+++       |+            +.-|...++ +++|.|||+.||
T Consensus        20 ~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~qRl-------wt------------ip~p~~~v~~sL~W~~DGklla   78 (665)
T KOG4640|consen   20 PINIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQRL-------WT------------IPIPGENVTASLCWRPDGKLLA   78 (665)
T ss_pred             ccceEEEEEcCccc-hhheeccCCcEEEEEec-ccee-------Ee------------ccCCCCccceeeeecCCCCEEE
Confidence            35788999999988 79999999999998877 4443       33            344555666 999999999999


Q ss_pred             EEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEc
Q 001295          429 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS  466 (1106)
Q Consensus       429 s~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s  466 (1106)
                      +|-.||+|++.|+.++..+...  ...-...|.++-|.
T Consensus        79 Vg~kdG~I~L~Dve~~~~l~~~--~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   79 VGFKDGTIRLHDVEKGGRLVSF--LFSVETDISKGIWD  114 (665)
T ss_pred             EEecCCeEEEEEccCCCceecc--ccccccchheeecc
Confidence            9999999999999998766532  22234567777775

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.16  E-value=0.13  Score=54.88  Aligned_cols=220  Identities=13%  Similarity=0.089  Sum_probs=125.9

Q ss_pred             EEEecCCCEEEEEe--CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEec--
Q 001295          816 FALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK--  891 (1106)
Q Consensus       816 l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~--  891 (1106)
                      ..|.++...|+...  .+.|.-|+..+++. ..+... +.+.++..-. .+..|+++  +.-+++++..++..+..+.  
T Consensus        30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p-~~~~~~~~~d-~~g~Lv~~--~~g~~~~~~~~~~~~t~~~~~  104 (307)
T COG3386          30 PVWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSP-GGFSSGALID-AGGRLIAC--EHGVRLLDPDTGGKITLLAEP  104 (307)
T ss_pred             ccCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECC-CCcccceeec-CCCeEEEE--ccccEEEeccCCceeEEeccc
Confidence            34666777666655  68899999876543 333322 2334444333 33344433  2346777776555432221  


Q ss_pred             --C-cccCeeEEEEecCCCEEEEEcC-----C----CcEEEEeCCC-cccccceeecccCCCCCCCCCCceEEEcCCCcE
Q 001295          892 --G-HSKRITGLAFSHALNVLVSSGA-----D----SQLCVWSSDG-WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH  958 (1106)
Q Consensus       892 --~-h~~~V~~l~~s~d~~~l~s~s~-----D----g~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~  958 (1106)
                        + -...-+.+...|+|.+.++...     .    ..-.+|.+.. +.     ......++.   .....++||||++.
T Consensus       105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~-----~~~l~~~~~---~~~NGla~SpDg~t  176 (307)
T COG3386         105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGG-----VVRLLDDDL---TIPNGLAFSPDGKT  176 (307)
T ss_pred             cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCC-----EEEeecCcE---EecCceEECCCCCE
Confidence              1 1245667888999988876544     1    1124555552 21     122222211   13478999999988


Q ss_pred             EEEE--eCCeEEEEecCC--ceE---eeecccCCCCCCeeEEEECCCCCEEEEEEcCC-eEEEEEcCCceeEEeeCCCcc
Q 001295          959 FLVV--HETQLAIFETTK--LEC---VKQWVPRESSAPITHATFSCDSQLVYACFLDA-TVCVFSAANLKLRCRINPSAY 1030 (1106)
Q Consensus       959 l~~~--~d~~v~i~d~~~--~~~---~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg-~i~vwd~~~~~~~~~~~~~~~ 1030 (1106)
                      |..+  ..+.|.-|++..  +..   ........+.+..-.++...+|.+-+++-.+| .|.+|+.+ |+++..+.    
T Consensus       177 ly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~----  251 (307)
T COG3386         177 LYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIK----  251 (307)
T ss_pred             EEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEE----
Confidence            8775  457788877652  211   11112222356667788888888875554454 89999988 99998887    


Q ss_pred             cCCCCCCCCccceEEEEeCCCCCEEEEEe
Q 001295         1031 LPAGVSSSNVHPLVIAAHPQEPNEFALGL 1059 (1106)
Q Consensus      1031 ~~~~~~~~~v~~~~~~~~~~d~~~l~t~~ 1059 (1106)
                      +|.      ..+..++|-..+.+.|.+.+
T Consensus       252 lP~------~~~t~~~FgG~~~~~L~iTs  274 (307)
T COG3386         252 LPV------KRPTNPAFGGPDLNTLYITS  274 (307)
T ss_pred             CCC------CCCccceEeCCCcCEEEEEe
Confidence            442      12236788754556554443

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.13  E-value=0.057  Score=53.97  Aligned_cols=102  Identities=16%  Similarity=0.281  Sum_probs=69.6

Q ss_pred             CCcEEEEEecCCCeEEEEEeccCc-EEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEE
Q 001295          351 SSPMSMDFHPVQQTLLLVGTNVGD-IGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV  429 (1106)
Q Consensus       351 ~~v~~~~~sp~g~~llatg~~dg~-i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las  429 (1106)
                      ..-..++|+|.-.+-++.+-.-|+ ..++|..+........-           ....-+-+|.      .|||||++|..
T Consensus        68 aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s-----------~~~RHfyGHG------vfs~dG~~LYA  130 (366)
T COG3490          68 ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVS-----------QEGRHFYGHG------VFSPDGRLLYA  130 (366)
T ss_pred             cccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEec-----------ccCceeeccc------ccCCCCcEEEe
Confidence            344567888877655666655554 67888887766543110           0111245664      59999999987


Q ss_pred             EeCC-----CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCc
Q 001295          430 AYSR-----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ  471 (1106)
Q Consensus       430 ~~~d-----~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~  471 (1106)
                      .-.|     |.|-|||...+  .....++..|.-.-..+.|.+||+.
T Consensus       131 TEndfd~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGrt  175 (366)
T COG3490         131 TENDFDPNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGRT  175 (366)
T ss_pred             ecCCCCCCCceEEEEecccc--cceecccccCCcCcceeEEecCCcE
Confidence            6433     78999999843  4555678888888899999999995

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.12  E-value=0.15  Score=54.33  Aligned_cols=232  Identities=13%  Similarity=0.074  Sum_probs=131.7

Q ss_pred             EEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeCCCe
Q 001295          356 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI  435 (1106)
Q Consensus       356 ~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~  435 (1106)
                      -.|.+++..|+.+.-..+.|.-||..+++...                    +.. .+.+.++..-.++..|+++. .| 
T Consensus        30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--------------------~~~-p~~~~~~~~~d~~g~Lv~~~-~g-   86 (307)
T COG3386          30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRV--------------------FPS-PGGFSSGALIDAGGRLIACE-HG-   86 (307)
T ss_pred             ccCcCCCCEEEEEeCCCCeEEEecCCcCceEE--------------------EEC-CCCcccceeecCCCeEEEEc-cc-
Confidence            34677777778777778999999998775432                    111 22334444444455555542 33 


Q ss_pred             EEEEEccCCceeeeeeeec-cc-cCCeeEEEEcCCCCceEEEEecC------C---CcEEEEeCC-CCceeEEEeccCCC
Q 001295          436 VQIYSYHGGDEVRQHLEID-AH-VGGVNDIAFSHPNKQLCVITCGD------D---KTIKVWDAT-NGAKQYIFEGHEAP  503 (1106)
Q Consensus       436 v~iwd~~~~~~~~~~~~l~-~h-~~~V~~~~~s~d~~~~~l~s~~~------d---~~i~iwd~~-~~~~~~~~~~h~~~  503 (1106)
                      +.+++.+++..+..+.... +. ...-+.+...|+|.  +.++...      +   ..-.||-+. .+..++.+..+-..
T Consensus        87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~--~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~  164 (307)
T COG3386          87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR--IWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTI  164 (307)
T ss_pred             cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC--EEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEe
Confidence            6777876665433222221 21 24567889999998  3443322      0   112455444 56777777766677


Q ss_pred             eEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEE
Q 001295          504 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA  583 (1106)
Q Consensus       504 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  583 (1106)
                      -+.++|++++. .+.++=+..+.|.-|++......    .... ...+.+         ....+..-.++...+|++.++
T Consensus       165 ~NGla~SpDg~-tly~aDT~~~~i~r~~~d~~~g~----~~~~-~~~~~~---------~~~~G~PDG~~vDadG~lw~~  229 (307)
T COG3386         165 PNGLAFSPDGK-TLYVADTPANRIHRYDLDPATGP----IGGR-RGFVDF---------DEEPGLPDGMAVDADGNLWVA  229 (307)
T ss_pred             cCceEECCCCC-EEEEEeCCCCeEEEEecCcccCc----cCCc-ceEEEc---------cCCCCCCCceEEeCCCCEEEe
Confidence            78899877653 34444455688888877631100    0000 001111         011112233566666776655


Q ss_pred             EECC-CeEEEEECCCcceeEEEccCCCCCCcCeEEEcc-CCCEEEEEeC
Q 001295          584 AGDD-FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTN  630 (1106)
Q Consensus       584 ~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~  630 (1106)
                      +..+ +.|.+|+.+ |+++..+....  ..+++++|-- +.+.|.+.+.
T Consensus       230 a~~~g~~v~~~~pd-G~l~~~i~lP~--~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         230 AVWGGGRVVRFNPD-GKLLGEIKLPV--KRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             cccCCceEEEECCC-CcEEEEEECCC--CCCccceEeCCCcCEEEEEec
Confidence            4444 399999998 99998887763  3577888854 4555554443

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.12  E-value=0.029  Score=66.50  Aligned_cols=146  Identities=10%  Similarity=0.114  Sum_probs=97.8

Q ss_pred             CCceEEE-eeCCCcEEEEEeecceEEEEecCcccC-eeEEEEecC-------CCEEEEEcCCCcEEEEeCCCccccccee
Q 001295          863 DNNIIAI-GMDDSSIQIYNVRVDEVKSKLKGHSKR-ITGLAFSHA-------LNVLVSSGADSQLCVWSSDGWEKQKNRF  933 (1106)
Q Consensus       863 d~~~la~-g~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~s~d-------~~~l~s~s~Dg~i~vwd~~~~~~~~~~~  933 (1106)
                      +.++|+. ......|+-.|+..|+.+..+..|... |..+  .|+       ....+.|-.+..+..||.+-..   ..+
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~---~k~  566 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG---NKL  566 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCC---Cce
Confidence            4444443 345678999999999999999988754 5544  443       2344556677789999987532   111


Q ss_pred             ecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEE
Q 001295          934 LQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCV 1013 (1106)
Q Consensus       934 ~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~v 1013 (1106)
                      ...............|++-+.+|...+.+.+|.||+||--..+....+.  +-..+|..|..+.||+||++.+ +..+.+
T Consensus       567 v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp--~lG~pI~~iDvt~DGkwilaTc-~tyLlL  643 (794)
T PF08553_consen  567 VDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALP--GLGDPIIGIDVTADGKWILATC-KTYLLL  643 (794)
T ss_pred             eeccccccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCC--CCCCCeeEEEecCCCcEEEEee-cceEEE
Confidence            1111111122245678888888887777899999999954333222222  5578999999999999988665 667777


Q ss_pred             EEc
Q 001295         1014 FSA 1016 (1106)
Q Consensus      1014 wd~ 1016 (1106)
                      ++.
T Consensus       644 i~t  646 (794)
T PF08553_consen  644 IDT  646 (794)
T ss_pred             EEE
Confidence            775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.09  E-value=0.1  Score=57.59  Aligned_cols=94  Identities=18%  Similarity=0.291  Sum_probs=61.8

Q ss_pred             EEEEccCCCEEEEEeCCCeEEE---EEccC-C--ce---eeeeeeecccc-CCeeEEEEcCC---C------CceEEEEe
Q 001295          417 RVIWSPDGSLFGVAYSRHIVQI---YSYHG-G--DE---VRQHLEIDAHV-GGVNDIAFSHP---N------KQLCVITC  477 (1106)
Q Consensus       417 ~l~~spdg~~las~~~d~~v~i---wd~~~-~--~~---~~~~~~l~~h~-~~V~~~~~s~d---~------~~~~l~s~  477 (1106)
                      .++.+|++++||.+..+..+.+   |+... +  +.   +.-...+.... ..|+++.+-|=   .      ....++.|
T Consensus         6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG   85 (415)
T PF14655_consen    6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG   85 (415)
T ss_pred             eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence            4688999999999988877665   64421 1  11   11111122111 46777766442   1      12289999


Q ss_pred             cCCCcEEEEeCCCCceeEEEeccCCCeEEEeccc
Q 001295          478 GDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHH  511 (1106)
Q Consensus       478 ~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~  511 (1106)
                      ..+|.|++|. ++|..+..-.-|..+|..+....
T Consensus        86 ~ssG~vrfyt-e~G~LL~~Q~~h~~pV~~ik~~~  118 (415)
T PF14655_consen   86 TSSGYVRFYT-ENGVLLLSQLLHEEPVLKIKCRS  118 (415)
T ss_pred             ecccEEEEEe-ccchHHHHHhcCccceEEEEecc
Confidence            9999999999 68888777667899999887543

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.08  E-value=0.12  Score=56.59  Aligned_cols=223  Identities=13%  Similarity=0.073  Sum_probs=119.4

Q ss_pred             CcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccC----CCEEEEEeC---------C-CeEEE
Q 001295          373 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD----GSLFGVAYS---------R-HIVQI  438 (1106)
Q Consensus       373 g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd----g~~las~~~---------d-~~v~i  438 (1106)
                      +.|++.|..+.+.+....+.-               ..+-..+..+.|..+    -.+|++|+.         . |.|.+
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~---------------~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v   66 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEP---------------NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILV   66 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEET---------------TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCC---------------CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEE
Confidence            357888888887776544431               111112333344433    467887752         2 88999


Q ss_pred             EEccCC----ceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCc-eeEEEe-ccCCCeEEEecccc
Q 001295          439 YSYHGG----DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFE-GHEAPVYSVCPHHK  512 (1106)
Q Consensus       439 wd~~~~----~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~-~h~~~v~~~~~~~~  512 (1106)
                      +++...    ..++..... ...++|++++-. .+.  ++++.  .+.|.+|++...+ ....-. .....+.++..  .
T Consensus        67 ~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~-~~~--lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~  138 (321)
T PF03178_consen   67 FEISESPENNFKLKLIHST-EVKGPVTAICSF-NGR--LVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--F  138 (321)
T ss_dssp             EEECSS-----EEEEEEEE-EESS-EEEEEEE-TTE--EEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--E
T ss_pred             EEEEcccccceEEEEEEEE-eecCcceEhhhh-CCE--EEEee--cCEEEEEEccCcccchhhheecceEEEEEEec--c
Confidence            999984    233333222 457889999876 343  34444  3789999998877 433222 12335666653  2


Q ss_pred             CCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEE
Q 001295          513 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF  592 (1106)
Q Consensus       513 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i  592 (1106)
                      .  ++++.|.....+.++.++.....         ..-++-.....         .+.++.+-++++.++++..+|.+.+
T Consensus       139 ~--~~I~vgD~~~sv~~~~~~~~~~~---------l~~va~d~~~~---------~v~~~~~l~d~~~~i~~D~~gnl~~  198 (321)
T PF03178_consen  139 K--NYILVGDAMKSVSLLRYDEENNK---------LILVARDYQPR---------WVTAAEFLVDEDTIIVGDKDGNLFV  198 (321)
T ss_dssp             T--TEEEEEESSSSEEEEEEETTTE----------EEEEEEESS-B---------EEEEEEEE-SSSEEEEEETTSEEEE
T ss_pred             c--cEEEEEEcccCEEEEEEEccCCE---------EEEEEecCCCc---------cEEEEEEecCCcEEEEEcCCCeEEE
Confidence            3  48889988888887755542211         11111111111         2333444433346888999999998


Q ss_pred             EECCC-------c--ceeEEEccCCCCCCcCeE---EEcc--CC------CEEEEEeCCCcEEEEEc
Q 001295          593 WDMDS-------V--QLLTSIDADGGLPASPRI---RFNK--DG------CLLAVSTNDNGIKILAT  639 (1106)
Q Consensus       593 wd~~~-------~--~~~~~~~~~~~~~~v~~v---~~s~--~~------~~l~~~~~dg~i~iwd~  639 (1106)
                      +....       +  +.......+-+ ..|+++   ++.|  .+      ..++.++.+|.|.+.-.
T Consensus       199 l~~~~~~~~~~~~~~~L~~~~~f~lg-~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~p  264 (321)
T PF03178_consen  199 LRYNPEIPNSRDGDPKLERISSFHLG-DIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVLIP  264 (321)
T ss_dssp             EEE-SS-SSTTTTTTBEEEEEEEE-S-S-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEEEE
T ss_pred             EEECCCCcccccccccceeEEEEECC-CccceEEEEEeeecCCCCcccccceEEEEecCCEEEEEEe
Confidence            87652       2  22222222221 245555   4444  12      24888889999985533

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.07  E-value=0.26  Score=49.46  Aligned_cols=209  Identities=13%  Similarity=0.053  Sum_probs=121.6

Q ss_pred             eeEEEEecCCCE-EEEEe-CCe-EEEEEcCCCceeeeecCCCCC--eeEEEEecCCCceEEEeeCC-----CcEEEEEee
Q 001295          813 VPCFALSKNDSY-VMSAS-GGK-ISLFNMMTFKTMATFMPPPPA--ATFLAFHPQDNNIIAIGMDD-----SSIQIYNVR  882 (1106)
Q Consensus       813 v~~l~~s~~~~~-l~~~s-dg~-i~vwd~~~~~~~~~~~~~~~~--v~~l~~s~~d~~~la~g~~d-----g~v~iwd~~  882 (1106)
                      ...++++|.-.. ++.+- -|+ ..++|..+.+.+.++....+.  --.=.||| ||.+|...-.|     |.|-|||..
T Consensus        70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r  148 (366)
T COG3490          70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDAR  148 (366)
T ss_pred             cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEecc
Confidence            345777776543 34444 354 678898887766655432221  11236899 88888765333     689999987


Q ss_pred             cc-eEEEEecCcccCeeEEEEecCCCEEEEEcCC------------------CcEEEEeCCCcccccceeecccCCCCCC
Q 001295          883 VD-EVKSKLKGHSKRITGLAFSHALNVLVSSGAD------------------SQLCVWSSDGWEKQKNRFLQIPTGRTPT  943 (1106)
Q Consensus       883 ~~-~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~  943 (1106)
                      .+ +.+.++..|.-.-..|.|.+||+.|+.+...                  -++.+-|..+++...+..+....    .
T Consensus       149 ~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l----~  224 (366)
T COG3490         149 EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASL----R  224 (366)
T ss_pred             cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhh----h
Confidence            53 5667888888777889999999999987541                  11233333333322222211101    1


Q ss_pred             CCCCceEEEcCCCcEEEEE-eCC-----eEEEEecCCceEeeecccC-----CCCCCeeEEEECCCCCEEEEEEcC-CeE
Q 001295          944 AQSDTRVQFHQDQIHFLVV-HET-----QLAIFETTKLECVKQWVPR-----ESSAPITHATFSCDSQLVYACFLD-ATV 1011 (1106)
Q Consensus       944 ~~~i~~~~~s~dg~~l~~~-~d~-----~v~i~d~~~~~~~~~~~~~-----~h~~~v~~l~~s~d~~~l~t~s~D-g~i 1011 (1106)
                      ..+++.++..+||+.++.+ ..|     ---+=-...++.+.-+...     .-...|-+|+...+..+++..+-. ...
T Consensus       225 ~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~  304 (366)
T COG3490         225 QLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRA  304 (366)
T ss_pred             hcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeE
Confidence            1367788888888877763 211     1111111122222222111     113457788888767776655544 467


Q ss_pred             EEEEcCCceeEEeeC
Q 001295         1012 CVFSAANLKLRCRIN 1026 (1106)
Q Consensus      1012 ~vwd~~~~~~~~~~~ 1026 (1106)
                      .+||..+|+.+....
T Consensus       305 vi~da~tG~vv~~a~  319 (366)
T COG3490         305 VIWDAATGAVVSEAA  319 (366)
T ss_pred             EEEEcCCCcEEeccc
Confidence            889999999886544

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.04  E-value=0.25  Score=56.55  Aligned_cols=239  Identities=12%  Similarity=0.104  Sum_probs=125.1

Q ss_pred             eeEEEEecCCCEEEEEe--CC----eEEEEEcCCCceeeee-cCCCCCeeEEEEecCCCceEEEee-CC----------C
Q 001295          813 VPCFALSKNDSYVMSAS--GG----KISLFNMMTFKTMATF-MPPPPAATFLAFHPQDNNIIAIGM-DD----------S  874 (1106)
Q Consensus       813 v~~l~~s~~~~~l~~~s--dg----~i~vwd~~~~~~~~~~-~~~~~~v~~l~~s~~d~~~la~g~-~d----------g  874 (1106)
                      +....+||||+++|.+-  +|    .|+++|+.+++.+... ..  .....+.|.+ |++.|+... .+          .
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~-d~~~~~y~~~~~~~~~~~~~~~~  202 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSD-DGKGFFYTRFDEDQRTSDSGYPR  202 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECT-TSSEEEEEECSTTTSS-CCGCCE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeC-CCCEEEEEEeCcccccccCCCCc
Confidence            34678999999999773  33    4999999999776432 21  1123499999 655544443 22          2


Q ss_pred             cEEEEEeecceE--EEEecCcccC--eeEEEEecCCCEEEEEcCC----CcEEEEeCCCc--ccccceeecccCCCCCCC
Q 001295          875 SIQIYNVRVDEV--KSKLKGHSKR--ITGLAFSHALNVLVSSGAD----SQLCVWSSDGW--EKQKNRFLQIPTGRTPTA  944 (1106)
Q Consensus       875 ~v~iwd~~~~~~--~~~l~~h~~~--V~~l~~s~d~~~l~s~s~D----g~i~vwd~~~~--~~~~~~~~~~~~~~~~~~  944 (1106)
                      .|+.|.+.+...  ...+......  ...+..++|+++|+.....    ..+.+-++..+  .......+....      
T Consensus       203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~------  276 (414)
T PF02897_consen  203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE------  276 (414)
T ss_dssp             EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS------
T ss_pred             EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC------
Confidence            377788766432  2334443332  5678899999998754322    34677777764  111222222211      


Q ss_pred             CCCceEEEcCCCcEEEEE----eCCeEEEEecCCceE---eeecccCCCCC--CeeEEEECCCCCE-EEEEEcCC--eEE
Q 001295          945 QSDTRVQFHQDQIHFLVV----HETQLAIFETTKLEC---VKQWVPRESSA--PITHATFSCDSQL-VYACFLDA--TVC 1012 (1106)
Q Consensus       945 ~~i~~~~~s~dg~~l~~~----~d~~v~i~d~~~~~~---~~~~~~~~h~~--~v~~l~~s~d~~~-l~t~s~Dg--~i~ 1012 (1106)
                      ..+....-...+.+++.+    ..+.|...++.+...   ...+.  .|..  .+..+..  .+.+ ++....++  .|+
T Consensus       277 ~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~--~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~  352 (414)
T PF02897_consen  277 DGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI--PEDEDVSLEDVSL--FKDYLVLSYRENGSSRLR  352 (414)
T ss_dssp             SS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE----SSSEEEEEEEE--ETTEEEEEEEETTEEEEE
T ss_pred             CceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEc--CCCCceeEEEEEE--ECCEEEEEEEECCccEEE
Confidence            122333333355454443    346788888877653   22333  3344  3455544  4444 44555555  488


Q ss_pred             EEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCC---CcEEEEeecCCC
Q 001295         1013 VFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD---GGVHVFEPLESE 1073 (1106)
Q Consensus      1013 vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~D---g~v~vW~~~~~~ 1073 (1106)
                      ++++..+.....+.    ++..   +.+.  .+...+....+.++.++-   ++++.+|+.+++
T Consensus       353 v~~~~~~~~~~~~~----~p~~---g~v~--~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~  407 (414)
T PF02897_consen  353 VYDLDDGKESREIP----LPEA---GSVS--GVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE  407 (414)
T ss_dssp             EEETT-TEEEEEEE----SSSS---SEEE--EEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred             EEECCCCcEEeeec----CCcc---eEEe--ccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence            99998444444443    2221   1122  344444333344443322   367788888877

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>smart00320 WD40 WD40 repeats

Probab=97.01  E-value=0.0017  Score=44.44  Aligned_cols=39  Identities=33%  Similarity=0.559  Sum_probs=34.9

Q ss_pred             ceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEe
Q 001295          884 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS  922 (1106)
Q Consensus       884 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd  922 (1106)
                      ++++..+..|...|+++.|.+++.++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            455677788999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.99  E-value=0.011  Score=63.95  Aligned_cols=150  Identities=12%  Similarity=0.123  Sum_probs=96.3

Q ss_pred             CCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEE-----EEEecCCeEEEEeCCCCCce-eEee
Q 001295          469 NKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI-----FSTALDGKIKAWLYDNLGSR-VDYE  542 (1106)
Q Consensus       469 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-----~s~~~dg~i~iwd~~~~~~~-~~~~  542 (1106)
                      ...+++.++.....++--|++.|+.+..+.-|.. |+-+.+.++..+..+     +.|-.|..|.-||.+-...- ....
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~  422 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV  422 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence            3444677888888899999999999999987766 666666565544333     45566888999998843331 1100


Q ss_pred             CCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCC
Q 001295          543 APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG  622 (1106)
Q Consensus       543 ~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~  622 (1106)
                            .+-.|+          +...+.|.+-..+| ++++|+.+|.||+||-...+....+.+-+  ..|..|..+.||
T Consensus       423 ------q~kqy~----------~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG--~~I~hVdvtadG  483 (644)
T KOG2395|consen  423 ------QSKQYS----------TKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLG--DAIKHVDVTADG  483 (644)
T ss_pred             ------eccccc----------cccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccC--CceeeEEeeccC
Confidence                  000000          11123333333333 59999999999999974333334445444  378999999999


Q ss_pred             CEEEEEeCCCcEEEEEc
Q 001295          623 CLLAVSTNDNGIKILAT  639 (1106)
Q Consensus       623 ~~l~~~~~dg~i~iwd~  639 (1106)
                      ++|++.+. ..+.+.++
T Consensus       484 Kwil~Tc~-tyLlLi~t  499 (644)
T KOG2395|consen  484 KWILATCK-TYLLLIDT  499 (644)
T ss_pred             cEEEEecc-cEEEEEEE
Confidence            99876664 56666665

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.89  E-value=0.066  Score=58.66  Aligned_cols=179  Identities=13%  Similarity=0.196  Sum_probs=102.4

Q ss_pred             CCEEEEEe----------C-CeEEEEEcCCC----ceeeee--cCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecc
Q 001295          822 DSYVMSAS----------G-GKISLFNMMTF----KTMATF--MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD  884 (1106)
Q Consensus       822 ~~~l~~~s----------d-g~i~vwd~~~~----~~~~~~--~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~  884 (1106)
                      ..++++|.          . |.|.++++...    ..+..+  ....++|++++--  ++++++ +. ++.|++|++...
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~lv~-~~-g~~l~v~~l~~~  117 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGRLVV-AV-GNKLYVYDLDNS  117 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTEEEE-EE-TTEEEEEEEETT
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCEEEE-ee-cCEEEEEEccCc
Confidence            46787773          1 77999999874    122211  2246789988876  344443 33 589999999987


Q ss_pred             e-EEEEecC-cccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-
Q 001295          885 E-VKSKLKG-HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-  961 (1106)
Q Consensus       885 ~-~~~~l~~-h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-  961 (1106)
                      + ....-.- ....++++...  +.+++.|+....+.++.++....   ..........  ...+.++.|-+|+..+++ 
T Consensus       118 ~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~---~l~~va~d~~--~~~v~~~~~l~d~~~~i~~  190 (321)
T PF03178_consen  118 KTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENN---KLILVARDYQ--PRWVTAAEFLVDEDTIIVG  190 (321)
T ss_dssp             SSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE----EEEEEEESS---BEEEEEEEE-SSSEEEEE
T ss_pred             ccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCC---EEEEEEecCC--CccEEEEEEecCCcEEEEE
Confidence            7 4433221 22245555554  66999999888898886654111   1111111111  135778888866655555 


Q ss_pred             EeCCeEEEEecCC-----------ceEeeecccCCCCCCeeEE---EECCC--CC------EEEEEEcCCeEEEE
Q 001295          962 VHETQLAIFETTK-----------LECVKQWVPRESSAPITHA---TFSCD--SQ------LVYACFLDATVCVF 1014 (1106)
Q Consensus       962 ~~d~~v~i~d~~~-----------~~~~~~~~~~~h~~~v~~l---~~s~d--~~------~l~t~s~Dg~i~vw 1014 (1106)
                      -.+|.+.++....           ...+..+.   ....|+++   ++.|.  +.      .++.++.+|.|.+.
T Consensus       191 D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~---lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  191 DKDGNLFVLRYNPEIPNSRDGDPKLERISSFH---LGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             ETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE----SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             cCCCeEEEEEECCCCcccccccccceeEEEEE---CCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            4778999887752           12233332   25678888   65552  22      37788899998844

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.89  E-value=0.27  Score=52.54  Aligned_cols=222  Identities=13%  Similarity=0.141  Sum_probs=124.8

Q ss_pred             cCCCEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEE----------
Q 001295          820 KNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK----------  889 (1106)
Q Consensus       820 ~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~----------  889 (1106)
                      ..++.|+.|.++.|.+++........... +...|..+...+ +-+.|++-+ |+.++++++........          
T Consensus         5 ~~~~~L~vGt~~Gl~~~~~~~~~~~~~i~-~~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~   81 (275)
T PF00780_consen    5 SWGDRLLVGTEDGLYVYDLSDPSKPTRIL-KLSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR   81 (275)
T ss_pred             cCCCEEEEEECCCEEEEEecCCccceeEe-ecceEEEEEEec-ccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence            46778888885449999983322222222 233499999998 555555443 59999999876433321          


Q ss_pred             ----ecCcccCeeEEE--EecC-CCEEEEEcCCCcEEEEeCCCccccc---ceeecccCCCCCCCCCCceEEEcCCCcEE
Q 001295          890 ----LKGHSKRITGLA--FSHA-LNVLVSSGADSQLCVWSSDGWEKQK---NRFLQIPTGRTPTAQSDTRVQFHQDQIHF  959 (1106)
Q Consensus       890 ----l~~h~~~V~~l~--~s~d-~~~l~s~s~Dg~i~vwd~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~s~dg~~l  959 (1106)
                          -......+...+  -... ...|+.+ ...+|.+|.........   ..-+...       ..+..++|.  +..+
T Consensus        82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~lp-------~~~~~i~~~--~~~i  151 (275)
T PF00780_consen   82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEISLP-------DPPSSIAFL--GNKI  151 (275)
T ss_pred             cccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEEcC-------CCcEEEEEe--CCEE
Confidence                011223344333  1123 3445544 44589998887632211   1112211       367888888  6777


Q ss_pred             EEEeCCeEEEEecCCceEeeecccCC----------CCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEE--eeCC
Q 001295          960 LVVHETQLAIFETTKLECVKQWVPRE----------SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRC--RINP 1027 (1106)
Q Consensus       960 ~~~~d~~v~i~d~~~~~~~~~~~~~~----------h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~--~~~~ 1027 (1106)
                      +++..+...+.|+.++.....+....          ...++..+... ++.+|++-  |..-.+.|. .|+...  .+. 
T Consensus       152 ~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~-  226 (275)
T PF00780_consen  152 CVGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKSTIQ-  226 (275)
T ss_pred             EEEeCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCcccEEE-
Confidence            77778889999999776654433211          12344444444 45676643  333333343 443332  222 


Q ss_pred             CcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCC
Q 001295         1028 SAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus      1028 ~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
                         ..       ..|..+++..   .+|++.+. +.|.||++.+++
T Consensus       227 ---W~-------~~p~~~~~~~---pyli~~~~-~~iEV~~~~~~~  258 (275)
T PF00780_consen  227 ---WS-------SAPQSVAYSS---PYLIAFSS-NSIEVRSLETGE  258 (275)
T ss_pred             ---cC-------CchhEEEEEC---CEEEEECC-CEEEEEECcCCc
Confidence               11       1244677753   46666664 559999999997

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.86  E-value=0.0046  Score=68.30  Aligned_cols=94  Identities=10%  Similarity=0.130  Sum_probs=76.1

Q ss_pred             CCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCee-EEEEecCCCEEEEEcCCCcEEEEeCCCcccc
Q 001295          851 PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT-GLAFSHALNVLVSSGADSQLCVWSSDGWEKQ  929 (1106)
Q Consensus       851 ~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~-~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~  929 (1106)
                      ...+..+.|+| .-.++|++..+|.|-+..+. .+.+.++.-|...++ +++|.|||+.||.|-.||+|++-|++++...
T Consensus        20 ~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l   97 (665)
T KOG4640|consen   20 PINIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL   97 (665)
T ss_pred             ccceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence            34688899999 88899999999999999988 777888887777777 9999999999999999999999999997654


Q ss_pred             cceeecccCCCCCCCCCCceEEEc
Q 001295          930 KNRFLQIPTGRTPTAQSDTRVQFH  953 (1106)
Q Consensus       930 ~~~~~~~~~~~~~~~~~i~~~~~s  953 (1106)
                      .......       ...|.++-|+
T Consensus        98 ~~~~~s~-------e~~is~~~w~  114 (665)
T KOG4640|consen   98 VSFLFSV-------ETDISKGIWD  114 (665)
T ss_pred             ecccccc-------ccchheeecc
Confidence            4321111       1356667775

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.78  E-value=0.032  Score=65.84  Aligned_cols=99  Identities=17%  Similarity=0.228  Sum_probs=69.6

Q ss_pred             EEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCC
Q 001295          365 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG  444 (1106)
Q Consensus       365 llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~  444 (1106)
                      .++.|+..|.|...|+...-.-.     .|             -..-.++|++++|+.||+.++.|-.+|.|.+||+..+
T Consensus       101 ~ivi~Ts~ghvl~~d~~~nL~~~-----~~-------------ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~  162 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGNLGPL-----HQ-------------NERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA  162 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcccchh-----hc-------------CCccCCcceeeEecCCCceeccccCCCcEEEEEccCC
Confidence            48888888999888876531100     00             1223569999999999999999999999999999998


Q ss_pred             ceeeeeeeeccccCC---eeEEEEcCCCCceEEEEecCCCcEEEEeC
Q 001295          445 DEVRQHLEIDAHVGG---VNDIAFSHPNKQLCVITCGDDKTIKVWDA  488 (1106)
Q Consensus       445 ~~~~~~~~l~~h~~~---V~~~~~s~d~~~~~l~s~~~d~~i~iwd~  488 (1106)
                      +.++.+   ..|..+   |..+.+..++.  .++++...|.  +|.+
T Consensus       163 k~l~~i---~e~~ap~t~vi~v~~t~~nS--~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  163 KILKVI---TEHGAPVTGVIFVGRTSQNS--KLLTSDTGGS--FWKL  202 (1206)
T ss_pred             cceeee---eecCCccceEEEEEEeCCCc--EEEEccCCCc--eEEE
Confidence            877643   334433   44444555555  5788877776  5654

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.58  E-value=0.48  Score=50.19  Aligned_cols=190  Identities=11%  Similarity=0.083  Sum_probs=91.3

Q ss_pred             EEEEecCCCEEEEEeCCeEEEEEcC-CCce-eeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecC
Q 001295          815 CFALSKNDSYVMSASGGKISLFNMM-TFKT-MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG  892 (1106)
Q Consensus       815 ~l~~s~~~~~l~~~sdg~i~vwd~~-~~~~-~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~  892 (1106)
                      .+....++..++++..|.  ||... .++. ........+.+..+..++ |+++++++.......-||--...-...-+.
T Consensus       108 ~i~~l~~~~~~l~~~~G~--iy~T~DgG~tW~~~~~~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~  184 (302)
T PF14870_consen  108 GITALGDGSAELAGDRGA--IYRTTDGGKTWQAVVSETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRN  184 (302)
T ss_dssp             EEEEEETTEEEEEETT----EEEESSTTSSEEEEE-S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--
T ss_pred             EEEEcCCCcEEEEcCCCc--EEEeCCCCCCeeEcccCCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccC
Confidence            344434444444444444  33332 2222 222334456788888898 899999886555555676432111122233


Q ss_pred             cccCeeEEEEecCCCEEEEEcCCCcEEEEeCC-CcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEe
Q 001295          893 HSKRITGLAFSHALNVLVSSGADSQLCVWSSD-GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFE  971 (1106)
Q Consensus       893 h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d  971 (1106)
                      -+.+|.+|.|+||+.+.+.+ ..|.|+.=+.. ..+.-.......    ......+..++|.+++...+++..+.+.+ .
T Consensus       185 ~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~----~~~~~~~ld~a~~~~~~~wa~gg~G~l~~-S  258 (302)
T PF14870_consen  185 SSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPI----KTNGYGILDLAYRPPNEIWAVGGSGTLLV-S  258 (302)
T ss_dssp             SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TT----SS--S-EEEEEESSSS-EEEEESTT-EEE-E
T ss_pred             ccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCc----ccCceeeEEEEecCCCCEEEEeCCccEEE-e
Confidence            56889999999998776644 78888877622 211100000111    01112468899999999999888886543 4


Q ss_pred             cCCceEeeecc-cCCCCCCeeEEEECCCCCEEEEEEcCCeEEEE
Q 001295          972 TTKLECVKQWV-PRESSAPITHATFSCDSQLVYACFLDATVCVF 1014 (1106)
Q Consensus       972 ~~~~~~~~~~~-~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vw 1014 (1106)
                      .+.|+--..-. ...-...++.|.|.++.+-++.| .||.|--|
T Consensus       259 ~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~~G~ll~~  301 (302)
T PF14870_consen  259 TDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-QDGVLLRY  301 (302)
T ss_dssp             SSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred             CCCCccceECccccCCCCceEEEEEcCCCceEEEC-CCcEEEEe
Confidence            44443322211 11224568899998776666655 68877554

>smart00320 WD40 WD40 repeats

Probab=96.56  E-value=0.0058  Score=41.61  Aligned_cols=31  Identities=23%  Similarity=0.385  Sum_probs=29.0

Q ss_pred             CCCCCeeEEEECCCCCEEEEEEcCCeEEEEE
Q 001295          985 ESSAPITHATFSCDSQLVYACFLDATVCVFS 1015 (1106)
Q Consensus       985 ~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd 1015 (1106)
                      .|...|.++.|.+++.++++++.|+.+++|+
T Consensus        10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320       10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            6788999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.55  E-value=0.89  Score=49.76  Aligned_cols=111  Identities=22%  Similarity=0.260  Sum_probs=58.3

Q ss_pred             CcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccC----CCEE
Q 001295          352 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD----GSLF  427 (1106)
Q Consensus       352 ~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd----g~~l  427 (1106)
                      ..+.|+|.|||+ ++++ ...|.|++++ ..+....  .+.  ++        ..+..........++|+|+    +.+.
T Consensus         3 ~P~~~a~~pdG~-l~v~-e~~G~i~~~~-~~g~~~~--~v~--~~--------~~v~~~~~~gllgia~~p~f~~n~~lY   67 (331)
T PF07995_consen    3 NPRSMAFLPDGR-LLVA-ERSGRIWVVD-KDGSLKT--PVA--DL--------PEVFADGERGLLGIAFHPDFASNGYLY   67 (331)
T ss_dssp             SEEEEEEETTSC-EEEE-ETTTEEEEEE-TTTEECE--EEE--E---------TTTBTSTTBSEEEEEE-TTCCCC-EEE
T ss_pred             CceEEEEeCCCc-EEEE-eCCceEEEEe-CCCcCcc--eec--cc--------ccccccccCCcccceeccccCCCCEEE
Confidence            568999999998 4554 6689999999 4444311  110  00        0124455678899999994    4433


Q ss_pred             EEEeCC--------CeEEEEEccCC--ce--eeee-eeec---cccCCeeEEEEcCCCCceEEEEec
Q 001295          428 GVAYSR--------HIVQIYSYHGG--DE--VRQH-LEID---AHVGGVNDIAFSHPNKQLCVITCG  478 (1106)
Q Consensus       428 as~~~d--------~~v~iwd~~~~--~~--~~~~-~~l~---~h~~~V~~~~~s~d~~~~~l~s~~  478 (1106)
                      ++.+..        ..|.-|....+  ..  .+.+ ..+.   .....-..|+|.|||. +++.+|+
T Consensus        68 v~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~-LYvs~G~  133 (331)
T PF07995_consen   68 VYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK-LYVSVGD  133 (331)
T ss_dssp             EEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE-EEEEEB-
T ss_pred             EEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc-EEEEeCC
Confidence            433321        24555555443  11  1111 1111   1234557799999995 3444443

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.53  E-value=0.78  Score=50.80  Aligned_cols=40  Identities=10%  Similarity=-0.130  Sum_probs=33.9

Q ss_pred             CCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295          987 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus       987 ~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
                      ...+.+|+.+|++++.|+...=|.|.++|+.++..+..++
T Consensus       307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWK  346 (415)
T PF14655_consen  307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWK  346 (415)
T ss_pred             CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhc
Confidence            4568899999999988887777999999999998877665

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.43  E-value=0.056  Score=58.79  Aligned_cols=145  Identities=10%  Similarity=0.099  Sum_probs=99.3

Q ss_pred             ceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCE--E-----EEEcCCCcEEEEeCCCcccccceeeccc
Q 001295          865 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNV--L-----VSSGADSQLCVWSSDGWEKQKNRFLQIP  937 (1106)
Q Consensus       865 ~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~--l-----~s~s~Dg~i~vwd~~~~~~~~~~~~~~~  937 (1106)
                      -+|.++..-..++--|+..|+.+.++.-|.+ |+-+.+.|+++.  |     +.|=.|..|.-||.+-....   .+...
T Consensus       347 lil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~---kl~~~  422 (644)
T KOG2395|consen  347 LILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN---KLAVV  422 (644)
T ss_pred             eEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc---eeeee
Confidence            3455556667888889999999999998877 888889887642  2     23556777888987742221   22222


Q ss_pred             CCCCC-CCCCCceEEEcCCCcEEEEEeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEc
Q 001295          938 TGRTP-TAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1016 (1106)
Q Consensus       938 ~~~~~-~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~ 1016 (1106)
                      .++.- ....-.|.+-..+|..++.+.+|.|++||- .+..-++.. .+-..+|..+..+.||++|++.+ +..+.+-++
T Consensus       423 q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAl-PgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t  499 (644)
T KOG2395|consen  423 QSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTAL-PGLGDAIKHVDVTADGKWILATC-KTYLLLIDT  499 (644)
T ss_pred             eccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcc-cccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence            22221 113445667777777666689999999998 444434333 25688999999999999988665 666666665

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.42  E-value=3.6  Score=50.06  Aligned_cols=213  Identities=15%  Similarity=0.080  Sum_probs=113.5

Q ss_pred             CCEEEEEeCCCeEEEEEccCCceeeeeeeeccccC------CeeEEEEcC----------------CCCceEEEEecCCC
Q 001295          424 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVG------GVNDIAFSH----------------PNKQLCVITCGDDK  481 (1106)
Q Consensus       424 g~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~------~V~~~~~s~----------------d~~~~~l~s~~~d~  481 (1106)
                      +..|..++.++.|.-.|..+|+.+-.... .....      ....+++..                .+.  .++.++.|+
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~-~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~--rV~~~T~Dg  270 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDP-KLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCAR--RIILPTSDA  270 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcC-CCCcccccccccccceEEecCCcccccccccccccccCC--EEEEecCCC
Confidence            45566667777788888888876543211 11000      011222211                233  477788899


Q ss_pred             cEEEEeCCCCceeEEEeccCCCeE-------------EEeccccCCceEEEEEec----------CCeEEEEeCCCCCce
Q 001295          482 TIKVWDATNGAKQYIFEGHEAPVY-------------SVCPHHKENIQFIFSTAL----------DGKIKAWLYDNLGSR  538 (1106)
Q Consensus       482 ~i~iwd~~~~~~~~~~~~h~~~v~-------------~~~~~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~  538 (1106)
                      .+.-.|.++|+.+..+.. .+.|.             .+.-.|.-.+..++.|+.          +|.|+-+|.++++.+
T Consensus       271 ~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~  349 (764)
T TIGR03074       271 RLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV  349 (764)
T ss_pred             eEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence            999999999999877642 22221             000001101235666643          689999999999988


Q ss_pred             eEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEE------------------ECCCeEEEEECCCcce
Q 001295          539 VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA------------------GDDFSIKFWDMDSVQL  600 (1106)
Q Consensus       539 ~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~------------------~~d~~i~iwd~~~~~~  600 (1106)
                      ..+..........  ...+. .+.......-...+++++...++.+                  ...+.|.-.|+++|+.
T Consensus       350 W~~~~g~p~~~~~--~~~g~-~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~  426 (764)
T TIGR03074       350 WAWDPGNPDPTAP--PAPGE-TYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKE  426 (764)
T ss_pred             eEEecCCCCcccC--CCCCC-EeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCce
Confidence            8765321111100  01111 1111111111223333333332221                  1245677888999998


Q ss_pred             eEEEccCCCC-------CCcCeEEEcc-CCC---EEEEEeCCCcEEEEEccCCc
Q 001295          601 LTSIDADGGL-------PASPRIRFNK-DGC---LLAVSTNDNGIKILATSDGI  643 (1106)
Q Consensus       601 ~~~~~~~~~~-------~~v~~v~~s~-~~~---~l~~~~~dg~i~iwd~~~~~  643 (1106)
                      .-.++...|.       ....-+.+.. +|+   .++.++.+|.+.++|.++|+
T Consensus       427 ~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~  480 (764)
T TIGR03074       427 RWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGE  480 (764)
T ss_pred             EEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCC
Confidence            8777642221       0011122322 553   78999999999999999993

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.41  E-value=0.029  Score=66.23  Aligned_cols=101  Identities=16%  Similarity=0.295  Sum_probs=76.1

Q ss_pred             CCCEEEEEe-CCeEEEEEcCCCce-eeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCee
Q 001295          821 NDSYVMSAS-GGKISLFNMMTFKT-MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT  898 (1106)
Q Consensus       821 ~~~~l~~~s-dg~i~vwd~~~~~~-~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~  898 (1106)
                      .+-+++.|+ .|.+...|+...-. ...-..-.++|++++|+. +|++++.|-.+|.|.+||+..++.++.+..|..+.+
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t  176 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT  176 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence            455677787 57888888765311 122222356899999999 999999999999999999999999999988877776


Q ss_pred             EEEE---ecCCCEEEEEcCCCcEEEEeCC
Q 001295          899 GLAF---SHALNVLVSSGADSQLCVWSSD  924 (1106)
Q Consensus       899 ~l~~---s~d~~~l~s~s~Dg~i~vwd~~  924 (1106)
                      ++-+   ..++..+.++..-|.  +|.+.
T Consensus       177 ~vi~v~~t~~nS~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  177 GVIFVGRTSQNSKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             eEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence            6554   456667888887775  66654

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.40  E-value=1.2  Score=48.64  Aligned_cols=243  Identities=13%  Similarity=0.119  Sum_probs=119.6

Q ss_pred             CeeEEEEecCCCEEEEEeCCeEEEEEcCCCce---eeee----cCCCCCeeEEEEecC---CCceEEEeeCC--------
Q 001295          812 AVPCFALSKNDSYVMSASGGKISLFNMMTFKT---MATF----MPPPPAATFLAFHPQ---DNNIIAIGMDD--------  873 (1106)
Q Consensus       812 ~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~---~~~~----~~~~~~v~~l~~s~~---d~~~la~g~~d--------  873 (1106)
                      ..++|+|.|||+++++-..|.|++++ ..+..   +..+    .........++++|+   ++.+.++.+..        
T Consensus         3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            35789999999988876699999999 33332   2222    223446789999982   24444444321        


Q ss_pred             CcEEEEEeecc-------e-EEEEecC---cccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCC-
Q 001295          874 SSIQIYNVRVD-------E-VKSKLKG---HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT-  941 (1106)
Q Consensus       874 g~v~iwd~~~~-------~-~~~~l~~---h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~-  941 (1106)
                      ..|.-|....+       + ++..+..   ....-..|+|.|||.+.++.+..+.-  -...........++.+..... 
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~--~~~~~~~~~~G~ilri~~dG~~  159 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGND--DNAQDPNSLRGKILRIDPDGSI  159 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTG--GGGCSTTSSTTEEEEEETTSSB
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCc--ccccccccccceEEEecccCcC
Confidence            24444544433       1 1122222   12234569999999888877665430  000000000111111111000 


Q ss_pred             ------------C------CCCCCceEEEcCC-CcEEEE--EeCCeEEEEecCCceEe----------------------
Q 001295          942 ------------P------TAQSDTRVQFHQD-QIHFLV--VHETQLAIFETTKLECV----------------------  978 (1106)
Q Consensus       942 ------------~------~~~~i~~~~~s~d-g~~l~~--~~d~~v~i~d~~~~~~~----------------------  978 (1106)
                                  .      .-.....++|.|. |.++++  +.+..=.|.-+..+.-.                      
T Consensus       160 p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~  239 (331)
T PF07995_consen  160 PADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSC  239 (331)
T ss_dssp             -TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-
T ss_pred             CCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCC
Confidence                        0      0013357899999 887777  44433233223222110                      


Q ss_pred             -----eecccCCCCCCeeEEEECC-------CCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEE
Q 001295          979 -----KQWVPRESSAPITHATFSC-------DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIA 1046 (1106)
Q Consensus       979 -----~~~~~~~h~~~v~~l~~s~-------d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 1046 (1106)
                           ..+.. .+...++.+.|-.       +|.++++.-..+.|....++++..+....  ..+ .   .....++.++
T Consensus       240 ~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~-~---~~~~r~~~v~  312 (331)
T PF07995_consen  240 PGFVPPVFAY-PPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEE--EFL-G---GFGGRPRDVA  312 (331)
T ss_dssp             TTS---SEEE-TTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE--EEC-T---TSSS-EEEEE
T ss_pred             CCcCccceee-cCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceE--Ecc-c---cCCCCceEEE
Confidence                 00001 1235566677653       45566666656778888877553332221  111 1   1112456899


Q ss_pred             EeCCCCCEEEEEeCCCcEE
Q 001295         1047 AHPQEPNEFALGLSDGGVH 1065 (1106)
Q Consensus      1047 ~~~~d~~~l~t~~~Dg~v~ 1065 (1106)
                      +.| ||.++++.+.+|.|.
T Consensus       313 ~~p-DG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  313 QGP-DGALYVSDDSDGKIY  330 (331)
T ss_dssp             EET-TSEEEEEE-TTTTEE
T ss_pred             EcC-CCeEEEEECCCCeEe
Confidence            999 788888888888774

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PHA02713 hypothetical protein; Provisional

Probab=96.30  E-value=0.38  Score=56.81  Aligned_cols=225  Identities=12%  Similarity=0.071  Sum_probs=113.1

Q ss_pred             eEEEEEcCCCceee--eecCCCCCeeEEEEecCCCceEEEeeCC------CcEEEEEeecceE--EEEecCcccCeeEEE
Q 001295          832 KISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDD------SSIQIYNVRVDEV--KSKLKGHSKRITGLA  901 (1106)
Q Consensus       832 ~i~vwd~~~~~~~~--~~~~~~~~v~~l~~s~~d~~~la~g~~d------g~v~iwd~~~~~~--~~~l~~h~~~V~~l~  901 (1106)
                      .+..||..+.+...  .+...... .+++. - ++.++++|+.+      ..+..||..+..-  +..+....... ++ 
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l-~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~-  347 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIIN-YASAI-V-DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SL-  347 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccc-eEEEE-E-CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eE-
Confidence            46677777654322  22211111 22333 3 67788888854      3477888776532  22222111111 22 


Q ss_pred             EecCCCEEEEEcCCC-----cEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eC-----------
Q 001295          902 FSHALNVLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE-----------  964 (1106)
Q Consensus       902 ~s~d~~~l~s~s~Dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d-----------  964 (1106)
                      ..-+|+..+.||.++     ++..||..+.+   +..+.......   .....+  .-+|+..+.| .+           
T Consensus       348 ~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~---W~~~~~mp~~r---~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~  419 (557)
T PHA02713        348 AVIDDTIYAIGGQNGTNVERTIECYTMGDDK---WKMLPDMPIAL---SSYGMC--VLDQYIYIIGGRTEHIDYTSVHHM  419 (557)
T ss_pred             EEECCEEEEECCcCCCCCCceEEEEECCCCe---EEECCCCCccc---ccccEE--EECCEEEEEeCCCccccccccccc
Confidence            233678888888764     37788877632   22221111110   011122  2356666664 22           


Q ss_pred             ------------CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcC------CeEEEEEcCC-ceeEEee
Q 001295          965 ------------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD------ATVCVFSAAN-LKLRCRI 1025 (1106)
Q Consensus       965 ------------~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~D------g~i~vwd~~~-~~~~~~~ 1025 (1106)
                                  ..+..||..+.+-...-..  .......-+..-+++..+.|+.+      ..|..||..+ .+-...-
T Consensus       420 ~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m--~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~  497 (557)
T PHA02713        420 NSIDMEEDTHSSNKVIRYDTVNNIWETLPNF--WTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT  497 (557)
T ss_pred             ccccccccccccceEEEECCCCCeEeecCCC--CcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc
Confidence                        2477888877654322111  01111111223356666667654      2467888887 4433211


Q ss_pred             CCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCC--cEEEEeecCCCCccCCCCCCCC
Q 001295         1026 NPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG--GVHVFEPLESEGKWGVPPPVDN 1084 (1106)
Q Consensus      1026 ~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg--~v~vW~~~~~~~~~~~~~~~~~ 1084 (1106)
                      .    ++..     .....++..  ++++.++|+.||  ++..+|+.+.+  |....|.-.
T Consensus       498 ~----m~~~-----r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~--W~~~~~~~~  545 (557)
T PHA02713        498 T----TESR-----LSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE--WNHICHQHS  545 (557)
T ss_pred             c----cCcc-----cccceeEEE--CCEEEEEeeecceeehhhcCccccc--ccchhhhcC
Confidence            1    2211     111123333  588999999998  77788888766  777666543

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.25  E-value=2.7  Score=46.86  Aligned_cols=288  Identities=12%  Similarity=0.088  Sum_probs=151.4

Q ss_pred             CceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEec-----CCCEEEEEe
Q 001295          755 GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-----NDSYVMSAS  829 (1106)
Q Consensus       755 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~-----~~~~l~~~s  829 (1106)
                      ...+++|+..|.++||+.....+.+..-.                +..     ....+|..+..-.     +...||+-.
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~ll----------------lE~-----~l~~PILqv~~G~F~s~~~~~~LaVLh   95 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLL----------------LET-----QLKDPILQVECGKFVSGSEDLQLAVLH   95 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEE----------------EEE-----ecCCcEEEEEeccccCCCCcceEEEec
Confidence            45788999999999998754333222111                111     1355666665432     344667766


Q ss_pred             CCeEEEEEcCC--Cc-------eeeeecCCCC--CeeEEEEecC----CCceEEEeeCCCcEEEEEeecceEEEEecCcc
Q 001295          830 GGKISLFNMMT--FK-------TMATFMPPPP--AATFLAFHPQ----DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS  894 (1106)
Q Consensus       830 dg~i~vwd~~~--~~-------~~~~~~~~~~--~v~~l~~s~~----d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~  894 (1106)
                      -..+.||.+..  +.       .+..+..|.-  ....+++-|-    +..+|.+-+-||.+.+|+-+.......+.+ .
T Consensus        96 P~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~  174 (418)
T PF14727_consen   96 PRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-F  174 (418)
T ss_pred             CCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-C
Confidence            78888888731  11       1111112221  1222222221    236888999999999999766544444444 2


Q ss_pred             cCeeEEEEecCCCEEEEEcCCCcEEEEeCCCccccccee-------ecccCCCC----------CCCCCCceEEEcCCCc
Q 001295          895 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRF-------LQIPTGRT----------PTAQSDTRVQFHQDQI  957 (1106)
Q Consensus       895 ~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~-------~~~~~~~~----------~~~~~i~~~~~s~dg~  957 (1106)
                      ---..++|.+.-..+++++.+..+.-|....-.......       -....+..          ...-.+..+.++....
T Consensus       175 llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~  254 (418)
T PF14727_consen  175 LLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSES  254 (418)
T ss_pred             CCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCc
Confidence            223457888888899999999888888753211000000       00000000          0001122233333444


Q ss_pred             EEEEEeCCeEEEEecCCceEeeecccCCCCCC--eeEEEECCCCC---EEEEEEcCCeEEEEEcCCceeEEeeCCCcccC
Q 001295          958 HFLVVHETQLAIFETTKLECVKQWVPRESSAP--ITHATFSCDSQ---LVYACFLDATVCVFSAANLKLRCRINPSAYLP 1032 (1106)
Q Consensus       958 ~l~~~~d~~v~i~d~~~~~~~~~~~~~~h~~~--v~~l~~s~d~~---~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~ 1032 (1106)
                      .+++-.++.+.+.+.. |........+.....  ++.+.+..++.   .++.++.++++.||.=.+..--+.+      +
T Consensus       255 ~IvvLger~Lf~l~~~-G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l------~  327 (418)
T PF14727_consen  255 DIVVLGERSLFCLKDN-GSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQL------P  327 (418)
T ss_pred             eEEEEecceEEEEcCC-CeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCC------C
Confidence            5555566667776663 454444333221111  11111122322   4788889999999985443333332      2


Q ss_pred             CCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCCCcc
Q 001295         1033 AGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKW 1076 (1106)
Q Consensus      1033 ~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~~~~ 1076 (1106)
                      +.    .| .+.++..++-...|++-+.+|.|.+-=+-|.....
T Consensus       328 ~~----PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs~~  366 (418)
T PF14727_consen  328 HV----PV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPSLF  366 (418)
T ss_pred             CC----CE-EEEecccCCCCceEEEEcCCCcEEEEEeCCCCccc
Confidence            11    12 22333333335689999999999988776655333

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.22  E-value=1.3  Score=45.26  Aligned_cols=186  Identities=9%  Similarity=0.125  Sum_probs=114.6

Q ss_pred             CCeeEEEEecCCCEEEEEe-CC--eEEEEEcCCCceeeeecCCCC-CeeEEEEecCCCceEEEeeCCCcEEEEEeecceE
Q 001295          811 EAVPCFALSKNDSYVMSAS-GG--KISLFNMMTFKTMATFMPPPP-AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV  886 (1106)
Q Consensus       811 ~~v~~l~~s~~~~~l~~~s-dg--~i~vwd~~~~~~~~~~~~~~~-~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~  886 (1106)
                      .-...+.|..+|.++-+.+ -|  .|+.+|+.+++......-... ---.++..  ++++....-.++...+||..+.+.
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~  122 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKK  122 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceE
Confidence            3345678878888777776 44  699999999988766442221 12344554  456777778899999999999998


Q ss_pred             EEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCC
Q 001295          887 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HET  965 (1106)
Q Consensus       887 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~  965 (1106)
                      +.++.-. +.=+.|+  .|++.|+..+....|.++|.++.+....  +.+.....+ -..+.-+-|- +|...|=. ...
T Consensus       123 ~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~--i~V~~~g~p-v~~LNELE~i-~G~IyANVW~td  195 (264)
T PF05096_consen  123 IGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRT--IQVTDNGRP-VSNLNELEYI-NGKIYANVWQTD  195 (264)
T ss_dssp             EEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEE--EE-EETTEE----EEEEEEE-TTEEEEEETTSS
T ss_pred             EEEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEE--EEEEECCEE-CCCcEeEEEE-cCEEEEEeCCCC
Confidence            8888643 4456777  5677777777777899999887654332  222222111 1233445554 56555544 667


Q ss_pred             eEEEEecCCceEeeecccC----------CC---CCCeeEEEECCCCCEE-EEE
Q 001295          966 QLAIFETTKLECVKQWVPR----------ES---SAPITHATFSCDSQLV-YAC 1005 (1106)
Q Consensus       966 ~v~i~d~~~~~~~~~~~~~----------~h---~~~v~~l~~s~d~~~l-~t~ 1005 (1106)
                      .|...|..+|+++..+...          .+   ..-...||+.|....| +||
T Consensus       196 ~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  196 RIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             eEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            8888899999987765321          01   3457899998876654 444

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.21  E-value=0.11  Score=57.73  Aligned_cols=158  Identities=13%  Similarity=0.169  Sum_probs=91.6

Q ss_pred             CCCeeEEEEecCCCceEEEee--CCCcEEEEEeecceEEEEecCcccCeeEEEEecC----CCEEEEEcCCCcEEEEeCC
Q 001295          851 PPAATFLAFHPQDNNIIAIGM--DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA----LNVLVSSGADSQLCVWSSD  924 (1106)
Q Consensus       851 ~~~v~~l~~s~~d~~~la~g~--~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d----~~~l~s~s~Dg~i~vwd~~  924 (1106)
                      -.++..++|.. +.+.+.+.-  .+|.+++=|   .+.+..|    ..|.+++|.|-    ...|...-....|.||.+.
T Consensus        19 iHPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~   90 (671)
T PF15390_consen   19 IHPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC   90 (671)
T ss_pred             hccccceEecC-CCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence            34688899974 444444432  344444322   2344444    45899999985    3345555566789999987


Q ss_pred             Ccccccceee--cccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEecCCc--eEeeecccCCCCCCeeEEEECCCC
Q 001295          925 GWEKQKNRFL--QIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKL--ECVKQWVPRESSAPITHATFSCDS  999 (1106)
Q Consensus       925 ~~~~~~~~~~--~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d~~~~--~~~~~~~~~~h~~~v~~l~~s~d~  999 (1106)
                      .........+  +.-+-..+.+--...+.|+|....|++ .....-.++++...  +....+.   ..+.|.|.+|..||
T Consensus        91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~---~~G~IhCACWT~DG  167 (671)
T PF15390_consen   91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK---TSGLIHCACWTKDG  167 (671)
T ss_pred             cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc---CCceEEEEEecCcC
Confidence            3322222222  222111121223467899999999988 43333344555433  3333332   26789999999999


Q ss_pred             CEEEEEEc-CCeEEEEEcCCc
Q 001295         1000 QLVYACFL-DATVCVFSAANL 1019 (1106)
Q Consensus      1000 ~~l~t~s~-Dg~i~vwd~~~~ 1019 (1106)
                      +.|+.+-. .=.-+|||-...
T Consensus       168 ~RLVVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  168 QRLVVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             CEEEEEeCCeEEEEEecCchh
Confidence            99776542 234688986544

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.17  E-value=1.1  Score=45.81  Aligned_cols=204  Identities=13%  Similarity=0.155  Sum_probs=120.3

Q ss_pred             ccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccc-cccCCCCCCCCeeEEEEe
Q 001295          741 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT-NDVTDSNPEEAVPCFALS  819 (1106)
Q Consensus       741 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~v~~l~~s  819 (1106)
                      +-...+.+++|+|+.+.|++..+.....||=-                      ..|.++. ..+.+   -.....|.+.
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt----------------------~~GdlirtiPL~g---~~DpE~Ieyi  137 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELT----------------------KEGDLIRTIPLTG---FSDPETIEYI  137 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEe----------------------cCCceEEEecccc---cCChhHeEEe
Confidence            34556999999999999999988766555421                      1333322 22322   3345567888


Q ss_pred             cCCCEEEEEe-CCeEEEEEcCCCceeeee----------cCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecce---
Q 001295          820 KNDSYVMSAS-GGKISLFNMMTFKTMATF----------MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE---  885 (1106)
Q Consensus       820 ~~~~~l~~~s-dg~i~vwd~~~~~~~~~~----------~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~---  885 (1106)
                      .+|+++++-- ++.+.++.+........+          ...+...-.++|+| ..+.|..+-+-.-+.||.+..+.   
T Consensus       138 g~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l  216 (316)
T COG3204         138 GGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSL  216 (316)
T ss_pred             cCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCccc
Confidence            8888877776 788888877644322111          11244577899999 55566666777777777765322   


Q ss_pred             EEEEecCcc-------cCeeEEEEecC-CCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCc
Q 001295          886 VKSKLKGHS-------KRITGLAFSHA-LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI  957 (1106)
Q Consensus       886 ~~~~l~~h~-------~~V~~l~~s~d-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~  957 (1106)
                      .......++       ..|.++.|.+. +.+|+-+.+++.+.-.|....-........-..|-.........++..++|.
T Consensus       217 ~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~  296 (316)
T COG3204         217 SVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN  296 (316)
T ss_pred             ccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCC
Confidence            111111222       34667778754 5667777778877777776532211111222222222223446788888888


Q ss_pred             EEEEEeCCeEEEE
Q 001295          958 HFLVVHETQLAIF  970 (1106)
Q Consensus       958 ~l~~~~d~~v~i~  970 (1106)
                      ..+++.-+-.+.+
T Consensus       297 lYIvSEPnlfy~F  309 (316)
T COG3204         297 LYIVSEPNLFYRF  309 (316)
T ss_pred             EEEEecCCcceec
Confidence            7777655544433

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.13  E-value=0.11  Score=44.74  Aligned_cols=102  Identities=11%  Similarity=0.242  Sum_probs=62.6

Q ss_pred             eEEEEEcC---C-CceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecC
Q 001295          746 ISRLIFTN---S-GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  821 (1106)
Q Consensus       746 i~~~~~s~---~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~  821 (1106)
                      |+++++..   + .+.|++++.|..|++|+-..                        . ..++.   ....|++++-...
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e------------------------~-~~Ei~---e~~~v~~L~~~~~   53 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE------------------------I-VAEIT---ETDKVTSLCSLGG   53 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc------------------------E-EEEEe---cccceEEEEEcCC
Confidence            44555543   3 25799999999999996321                        1 11111   4667888888777


Q ss_pred             CCEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCC---CceEEEeeCCCcEEE
Q 001295          822 DSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQD---NNIIAIGMDDSSIQI  878 (1106)
Q Consensus       822 ~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d---~~~la~g~~dg~v~i  878 (1106)
                      +++...-.+|+|-+|+-..  .+...+ ....++++++...+   -.-|++|-.+|.|-+
T Consensus        54 ~~F~Y~l~NGTVGvY~~~~--RlWRiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   54 GRFAYALANGTVGVYDRSQ--RLWRIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             CEEEEEecCCEEEEEeCcc--eeeeec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            5544444489999998643  223333 23346666665422   247889999998753

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.07  E-value=0.91  Score=47.40  Aligned_cols=145  Identities=13%  Similarity=0.059  Sum_probs=89.3

Q ss_pred             CCeeEEEEecCCCEEEEEe--CCe--EEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEE-eecce
Q 001295          811 EAVPCFALSKNDSYVMSAS--GGK--ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN-VRVDE  885 (1106)
Q Consensus       811 ~~v~~l~~s~~~~~l~~~s--dg~--i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd-~~~~~  885 (1106)
                      ..+.+.+++++++.++...  ++.  ++++...  ....... ....++.-.|++ ++.+.+....+...+++. ..+++
T Consensus        24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~   99 (253)
T PF10647_consen   24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGT   99 (253)
T ss_pred             ccccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCc
Confidence            3688999999999887765  444  5555443  3333322 233788889999 687777777677777774 23332


Q ss_pred             EE-EEecC--cccCeeEEEEecCCCEEEEEc---CCCcEEEEeCCCcccc-c---ceeecccCCCCCCCCCCceEEEcCC
Q 001295          886 VK-SKLKG--HSKRITGLAFSHALNVLVSSG---ADSQLCVWSSDGWEKQ-K---NRFLQIPTGRTPTAQSDTRVQFHQD  955 (1106)
Q Consensus       886 ~~-~~l~~--h~~~V~~l~~s~d~~~l~s~s---~Dg~i~vwd~~~~~~~-~---~~~~~~~~~~~~~~~~i~~~~~s~d  955 (1106)
                      .. ..+..  -...|+++.+||||..+|...   .++.|.|=-+...... .   .........   ....+..+.|.++
T Consensus       100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~---~~~~v~~v~W~~~  176 (253)
T PF10647_consen  100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPP---LLSDVTDVAWSDD  176 (253)
T ss_pred             ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEeccc---ccCcceeeeecCC
Confidence            21 11211  112899999999999887665   3567777655432221 1   111111111   1246789999999


Q ss_pred             CcEEEEE
Q 001295          956 QIHFLVV  962 (1106)
Q Consensus       956 g~~l~~~  962 (1106)
                      +.+++.+
T Consensus       177 ~~L~V~~  183 (253)
T PF10647_consen  177 STLVVLG  183 (253)
T ss_pred             CEEEEEe
Confidence            9988874

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.06  E-value=0.35  Score=50.52  Aligned_cols=150  Identities=16%  Similarity=0.058  Sum_probs=88.5

Q ss_pred             CeeEEEEecCCCceEEEee-CCCcEEEEEeecceEEEEe-cCcccCeeEEEEecCCCEEEEEcCCCcEEEEe-CCCcccc
Q 001295          853 AATFLAFHPQDNNIIAIGM-DDSSIQIYNVRVDEVKSKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWS-SDGWEKQ  929 (1106)
Q Consensus       853 ~v~~l~~s~~d~~~la~g~-~dg~v~iwd~~~~~~~~~l-~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd-~~~~~~~  929 (1106)
                      .+.+.++|+ ++..+|... .++.-.+|-...+.....+ .+  ..++.-.|++++...+....+...+++. ...++..
T Consensus        25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCCcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            688999999 666655544 3333344433333323332 33  3788889999988877777777777774 2232221


Q ss_pred             cceeecccCCCCCCCCCCceEEEcCCCcEEEEEe----CCeEEEEecC---Cc--eEe-eeccc-CCCCCCeeEEEECCC
Q 001295          930 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH----ETQLAIFETT---KL--ECV-KQWVP-RESSAPITHATFSCD  998 (1106)
Q Consensus       930 ~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~----d~~v~i~d~~---~~--~~~-~~~~~-~~h~~~v~~l~~s~d  998 (1106)
                       ...+......    ..|..+.+||||..+|...    ++.|.+--+.   .+  ..+ ..... ......++.+.|.++
T Consensus       102 -~~~v~~~~~~----~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~  176 (253)
T PF10647_consen  102 -PVEVDWPGLR----GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD  176 (253)
T ss_pred             -eEEecccccC----CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC
Confidence             1112211110    1689999999999999833    5677766543   22  011 00110 122568999999999


Q ss_pred             CCEEEEEEcCCe
Q 001295          999 SQLVYACFLDAT 1010 (1106)
Q Consensus       999 ~~~l~t~s~Dg~ 1010 (1106)
                      +.+++.+...+.
T Consensus       177 ~~L~V~~~~~~~  188 (253)
T PF10647_consen  177 STLVVLGRSAGG  188 (253)
T ss_pred             CEEEEEeCCCCC
Confidence            998776654443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.04  E-value=2.6  Score=44.79  Aligned_cols=231  Identities=12%  Similarity=0.034  Sum_probs=111.9

Q ss_pred             CeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeec---CCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeec-ceE-
Q 001295          812 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFM---PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEV-  886 (1106)
Q Consensus       812 ~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~---~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~-~~~-  886 (1106)
                      ...++.|..+ ..+++|..+. .+...+.++.-..+.   .-.+....+.... ++..++. +..|.|+.  ... |+. 
T Consensus        63 ~l~~I~f~~~-~g~ivG~~g~-ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~~~~l~-~~~G~iy~--T~DgG~tW  136 (302)
T PF14870_consen   63 HLNSISFDGN-EGWIVGEPGL-LLHTTDGGKTWERVPLSSKLPGSPFGITALG-DGSAELA-GDRGAIYR--TTDGGKTW  136 (302)
T ss_dssp             EEEEEEEETT-EEEEEEETTE-EEEESSTTSS-EE----TT-SS-EEEEEEEE-TTEEEEE-ETT--EEE--ESSTTSSE
T ss_pred             eEEEEEecCC-ceEEEcCCce-EEEecCCCCCcEEeecCCCCCCCeeEEEEcC-CCcEEEE-cCCCcEEE--eCCCCCCe
Confidence            3567777643 4555565553 333333444333322   1123334444433 3434443 44555433  322 322 


Q ss_pred             EEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCe
Q 001295          887 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQ  966 (1106)
Q Consensus       887 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~  966 (1106)
                      ......-.+.+..+.-++||++++++..-....-||-...   .........     ...|..+.|+|++...+++..+.
T Consensus       137 ~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~---~w~~~~r~~-----~~riq~~gf~~~~~lw~~~~Gg~  208 (302)
T PF14870_consen  137 QAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT---TWQPHNRNS-----SRRIQSMGFSPDGNLWMLARGGQ  208 (302)
T ss_dssp             EEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-S---S-EEEE--S-----SS-EEEEEE-TTS-EEEEETTTE
T ss_pred             eEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCc---cceEEccCc-----cceehhceecCCCCEEEEeCCcE
Confidence            1223344577889999999999998877666677775421   112222221     14789999999999888888888


Q ss_pred             EEEEe-cCCceEeee--cccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccce
Q 001295          967 LAIFE-TTKLECVKQ--WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPL 1043 (1106)
Q Consensus       967 v~i~d-~~~~~~~~~--~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1043 (1106)
                      |+.=+ ....+....  .........+..++|.+++...|+|+ .|++. ...+.|+--.+.......+..     .+  
T Consensus       209 ~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~-~S~DgGktW~~~~~~~~~~~n-----~~--  279 (302)
T PF14870_consen  209 IQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLL-VSTDGGKTWQKDRVGENVPSN-----LY--  279 (302)
T ss_dssp             EEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EE-EESSTTSS-EE-GGGTTSSS----------
T ss_pred             EEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccEE-EeCCCCccceECccccCCCCc-----eE--
Confidence            88876 222222111  11112244589999999988877665 56554 366777665554422223322     55  


Q ss_pred             EEEEeCCCCCEEEEEeCCCcEEEE
Q 001295         1044 VIAAHPQEPNEFALGLSDGGVHVF 1067 (1106)
Q Consensus      1044 ~~~~~~~d~~~l~t~~~Dg~v~vW 1067 (1106)
                      .+.|.+  ++.-.+.+.||.|--|
T Consensus       280 ~i~f~~--~~~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  280 RIVFVN--PDKGFVLGQDGVLLRY  301 (302)
T ss_dssp             EEEEEE--TTEEEEE-STTEEEEE
T ss_pred             EEEEcC--CCceEEECCCcEEEEe
Confidence            788886  3455555678887655

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.02  E-value=0.4  Score=41.40  Aligned_cols=66  Identities=14%  Similarity=0.181  Sum_probs=47.8

Q ss_pred             eeEEEE---cCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeC
Q 001295          460 VNDIAF---SHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY  532 (1106)
Q Consensus       460 V~~~~~---s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~  532 (1106)
                      |+++++   ..||.. .|+.|+.|..|++|+  ....+..+.. ...|.+++-..  . ..++.+..+|+|-+|+-
T Consensus         2 V~al~~~d~d~dg~~-eLlvGs~D~~IRvf~--~~e~~~Ei~e-~~~v~~L~~~~--~-~~F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen    2 VTALCLFDFDGDGEN-ELLVGSDDFEIRVFK--GDEIVAEITE-TDKVTSLCSLG--G-GRFAYALANGTVGVYDR   70 (111)
T ss_pred             eeEEEEEecCCCCcc-eEEEecCCcEEEEEe--CCcEEEEEec-ccceEEEEEcC--C-CEEEEEecCCEEEEEeC
Confidence            445554   446655 799999999999997  4466777764 45677776332  2 57999999999999865

>cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID)

Probab=95.98  E-value=0.0077  Score=55.31  Aligned_cols=82  Identities=21%  Similarity=0.295  Sum_probs=65.7

Q ss_pred             cccchhhhHHHHHHHHHHHhCCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccccccchhhccCCC-------chHH
Q 001295           67 RYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD-------TKSA  139 (1106)
Q Consensus        67 ~~~~~~~~~i~~q~~lEll~~~~~~~A~~~l~~~l~~l~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~-------~~~~  139 (1106)
                      ++.. ++|+++.+.||||+.++..++|..++++.-..+...+.+++++|+.+....++.+++....+++       .+.+
T Consensus        25 EL~~-lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~~~r~~Ky~i~ms~~s  103 (133)
T cd08044          25 ELSQ-LLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEHLKENELAKLFRSNKYVIRMSRDA  103 (133)
T ss_pred             HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHHHhhhHHHHHHHhCCEEEEECHHH
Confidence            4444 9999999999999999999999999998877777778999999999998888887776665555       3455


Q ss_pred             HHHHHHHHHh
Q 001295          140 RSIMLVELKK  149 (1106)
Q Consensus       140 r~~l~~~l~~  149 (1106)
                      -..|+..|++
T Consensus       104 ~~lL~~~L~~  113 (133)
T cd08044         104 YSLLLRFLES  113 (133)
T ss_pred             HHHHHHHHHH
Confidence            5555555554

The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various

>PRK10115 protease 2; Provisional

Probab=95.97  E-value=4.7  Score=49.00  Aligned_cols=196  Identities=9%  Similarity=0.031  Sum_probs=100.8

Q ss_pred             CCeeEEEEecCCCEEEEEeC--C----eEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeC-C-----CcEEE
Q 001295          811 EAVPCFALSKNDSYVMSASG--G----KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-D-----SSIQI  878 (1106)
Q Consensus       811 ~~v~~l~~s~~~~~l~~~sd--g----~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~-d-----g~v~i  878 (1106)
                      -.+..+.+|||+++|+.+.|  |    .|++.|+.++..+...-...  -..++|++ |++.|+.... +     ..|+.
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~-D~~~~~y~~~~~~~~~~~~v~~  203 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWAN-DSWTFYYVRKHPVTLLPYQVWR  203 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEee-CCCEEEEEEecCCCCCCCEEEE
Confidence            34667889999999998863  3    48899998876432221111  14699999 6654444432 2     36788


Q ss_pred             EEeecc--eEEEEecCcccCee-EEEEecCCCEEEEEc---CCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEE
Q 001295          879 YNVRVD--EVKSKLKGHSKRIT-GLAFSHALNVLVSSG---ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF  952 (1106)
Q Consensus       879 wd~~~~--~~~~~l~~h~~~V~-~l~~s~d~~~l~s~s---~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  952 (1106)
                      +++.++  +....+........ .+..+.|+++++..+   .++.+.+|+...........+....+      ....+. 
T Consensus       204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~-  276 (686)
T PRK10115        204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKD------HEYSLD-  276 (686)
T ss_pred             EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCC------CEEEEE-
Confidence            888877  33333443223333 333455888766443   34568888853321111111111111      112222 


Q ss_pred             cCCCcEEEEEeC----CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcC
Q 001295          953 HQDQIHFLVVHE----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAA 1017 (1106)
Q Consensus       953 s~dg~~l~~~~d----~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~ 1017 (1106)
                      ...+.+++....    ..|...++.+......+........|..+.++ .+.++++...+|.-+++-++
T Consensus       277 ~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~  344 (686)
T PRK10115        277 HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN  344 (686)
T ss_pred             eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence            223333333321    23444455421111223221113468888887 33556667777775555443

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.89  E-value=0.028  Score=54.51  Aligned_cols=104  Identities=15%  Similarity=0.201  Sum_probs=71.8

Q ss_pred             CCEEEEEe-CCeEEEEEcCCCc-eeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcc-cCee
Q 001295          822 DSYVMSAS-GGKISLFNMMTFK-TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS-KRIT  898 (1106)
Q Consensus       822 ~~~l~~~s-dg~i~vwd~~~~~-~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~-~~V~  898 (1106)
                      +.-+++|. +|.|.+|+..... ....+......|.+..-.-+++.+..++..||.|+.|++.-++.+...-.|. .++.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e  149 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE  149 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence            34455565 9999999876322 2122222223344433333356689999999999999999998888877787 6666


Q ss_pred             EEEEecCCCEEEEE--cCCCcEEEEeCCC
Q 001295          899 GLAFSHALNVLVSS--GADSQLCVWSSDG  925 (1106)
Q Consensus       899 ~l~~s~d~~~l~s~--s~Dg~i~vwd~~~  925 (1106)
                      .+..+..++.|+++  |.|..++.|++..
T Consensus       150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             eeEEecCCceEEeeccccchhhhhcchhh
Confidence            66677777778777  7888888888765

>PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID

Probab=95.86  E-value=0.0091  Score=55.50  Aligned_cols=82  Identities=20%  Similarity=0.302  Sum_probs=59.5

Q ss_pred             cccchhhhHHHHHHHHHHHhCCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccccccchhhccCCC-------chHH
Q 001295           67 RYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD-------TKSA  139 (1106)
Q Consensus        67 ~~~~~~~~~i~~q~~lEll~~~~~~~A~~~l~~~l~~l~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~-------~~~~  139 (1106)
                      ++.. ++|+|+.|.||+|+..++.++|..++.+.-..+...+.+++++|..+....++.+++....++.       .+.+
T Consensus        36 EL~~-lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~i~~~~~l~~~~~~~~~r~~Ky~I~ls~~s  114 (142)
T PF04494_consen   36 ELSR-LLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSSITSPEHLEENELARLFRSNKYVIRLSRDS  114 (142)
T ss_dssp             HHGG-GHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT--SHHHHHHSHHHHHHHCSGEEEEEEHHH
T ss_pred             HHHH-HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHhhCcHHHHhccHHHHHHHhCCeeEEECHHH
Confidence            3455 9999999999999999999999999998877787778888999988777766665554443433       3455


Q ss_pred             HHHHHHHHHh
Q 001295          140 RSIMLVELKK  149 (1106)
Q Consensus       140 r~~l~~~l~~  149 (1106)
                      -..|+..|++
T Consensus       115 ~~lL~~fL~~  124 (142)
T PF04494_consen  115 FSLLLQFLQE  124 (142)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            5555555543

The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.82  E-value=0.032  Score=39.84  Aligned_cols=31  Identities=19%  Similarity=0.360  Sum_probs=28.5

Q ss_pred             CcCeEEEEEccCCCEEEEEeCCCeEEEEEcc
Q 001295          412 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYH  442 (1106)
Q Consensus       412 ~~~V~~l~~spdg~~las~~~d~~v~iwd~~  442 (1106)
                      ...|.+++|||...+||.++.+|.|.++.++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            4479999999999999999999999999983

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.82  E-value=0.91  Score=53.50  Aligned_cols=235  Identities=9%  Similarity=0.080  Sum_probs=127.2

Q ss_pred             ecCCCEEEEEe-C------CeEEEEEcCCCceeee--ecCCCCCeeEEEEecCCCceEEEeeCC-C-----cEEEEEeec
Q 001295          819 SKNDSYVMSAS-G------GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDD-S-----SIQIYNVRV  883 (1106)
Q Consensus       819 s~~~~~l~~~s-d------g~i~vwd~~~~~~~~~--~~~~~~~v~~l~~s~~d~~~la~g~~d-g-----~v~iwd~~~  883 (1106)
                      +..+.++++|+ +      ..+..+|..++.....  +. ....-.++++.  ++.+.++|+.| |     ++..||..+
T Consensus       282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~  358 (571)
T KOG4441|consen  282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRT  358 (571)
T ss_pred             CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE--CCEEEEEccccCCCcccceEEEecCCC
Confidence            33455666665 3      3488888887644322  22 22224445554  57899999999 3     677888776


Q ss_pred             ce--EEEEecCcccCeeEEEEecCCCEEEEEcCCCc-----EEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCC
Q 001295          884 DE--VKSKLKGHSKRITGLAFSHALNVLVSSGADSQ-----LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ  956 (1106)
Q Consensus       884 ~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~-----i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg  956 (1106)
                      .+  .+..+...........  -+|.+.|+||.||.     +..||..+.+   +.........     .-..-+..-+|
T Consensus       359 ~~W~~~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~---W~~va~m~~~-----r~~~gv~~~~g  428 (571)
T KOG4441|consen  359 NQWTPVAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNK---WTPVAPMLTR-----RSGHGVAVLGG  428 (571)
T ss_pred             CceeccCCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCCc---ccccCCCCcc-----eeeeEEEEECC
Confidence            54  2222322222222122  26888999999964     6677766632   1111111000     11122333466


Q ss_pred             cEEEE-EeC------CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCC-----eEEEEEcCCceeEEe
Q 001295          957 IHFLV-VHE------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-----TVCVFSAANLKLRCR 1024 (1106)
Q Consensus       957 ~~l~~-~~d------~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg-----~i~vwd~~~~~~~~~ 1024 (1106)
                      +..++ |.+      ..+..||..+......-.... ...-..++ .-++...+.|+.|+     +|..||..+.+-...
T Consensus       429 ~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~-~R~~~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v  506 (571)
T KOG4441|consen  429 KLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNT-RRSGFGVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMV  506 (571)
T ss_pred             EEEEEcCcCCCccccceEEEEcCCCCceeecCCccc-ccccceEE-EECCEEEEECCccCCCccceEEEEcCCCCceeEc
Confidence            66666 323      468899988876544322111 11111122 23667777788776     377788887765533


Q ss_pred             eCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCC-----cEEEEeecCCCCccCCCCC
Q 001295         1025 INPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG-----GVHVFEPLESEGKWGVPPP 1081 (1106)
Q Consensus      1025 ~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg-----~v~vW~~~~~~~~~~~~~~ 1081 (1106)
                      -.    +...     .....++-.  ++...++|+.||     +|..||..+.+  |....+
T Consensus       507 ~~----m~~~-----rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~--W~~~~~  555 (571)
T KOG4441|consen  507 AP----MTSP-----RSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT--WTEVTE  555 (571)
T ss_pred             cc----Cccc-----cccccEEEE--CCEEEEEecccCccccceeEEcCCCCCc--eeeCCC
Confidence            21    1211     111123333  578889999888     57778877765  665554

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.81  E-value=4.4  Score=45.65  Aligned_cols=156  Identities=12%  Similarity=0.030  Sum_probs=85.7

Q ss_pred             CCeeEEEEcCCCCceEEEEec--CCCcEEEEeCCCCceeEEEeccCCCeEEEeccccC--CceEEEEEecCCeEEEEeCC
Q 001295          458 GGVNDIAFSHPNKQLCVITCG--DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE--NIQFIFSTALDGKIKAWLYD  533 (1106)
Q Consensus       458 ~~V~~~~~s~d~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~~l~s~~~dg~i~iwd~~  533 (1106)
                      .+|..++|. ||++ +++|.-  ..|.+++=|   .+.+.    .-..|..++|.|..  +...+++.-..+.|.+|.+.
T Consensus        20 HPvhGlaWT-DGkq-VvLT~L~l~~gE~kfGd---s~viG----qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~   90 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQ-VVLTDLQLHNGEPKFGD---SKVIG----QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC   90 (671)
T ss_pred             ccccceEec-CCCE-EEEEeeeeeCCccccCC---ccEee----ccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence            478999996 7776 455532  223332222   12233    33468888887652  22357777888999999876


Q ss_pred             CCCcee--EeeCCCCee-EEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCc--ceeEEEccCC
Q 001295          534 NLGSRV--DYEAPGRWC-TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV--QLLTSIDADG  608 (1106)
Q Consensus       534 ~~~~~~--~~~~~~~~v-~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~  608 (1106)
                      ......  -+......+ ..+-.-|+|              +.|+|....|+.-.....-.++++...  +....++.. 
T Consensus        91 ~s~~e~~K~l~sQtcEi~e~~pvLpQG--------------CVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~-  155 (671)
T PF15390_consen   91 PSTTERNKLLMSQTCEIREPFPVLPQG--------------CVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTS-  155 (671)
T ss_pred             cCccccccceeeeeeeccCCcccCCCc--------------ccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCC-
Confidence            321110  000000000 011112222              568888877776554444445555433  333334333 


Q ss_pred             CCCCcCeEEEccCCCEEEEEeCC-CcEEEEEc
Q 001295          609 GLPASPRIRFNKDGCLLAVSTND-NGIKILAT  639 (1106)
Q Consensus       609 ~~~~v~~v~~s~~~~~l~~~~~d-g~i~iwd~  639 (1106)
                        +.|.|.+|.+||+.|+++-.. =.-++||-
T Consensus       156 --G~IhCACWT~DG~RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  156 --GLIHCACWTKDGQRLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             --ceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence              459999999999998877543 23567874

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.74  E-value=1.3  Score=48.23  Aligned_cols=192  Identities=14%  Similarity=0.147  Sum_probs=93.4

Q ss_pred             eEEEEecCCCEEEEEe---C----CeEEEEEcCCCceeeeecCCCC---CeeEEEEecCCCceEEEee------------
Q 001295          814 PCFALSKNDSYVMSAS---G----GKISLFNMMTFKTMATFMPPPP---AATFLAFHPQDNNIIAIGM------------  871 (1106)
Q Consensus       814 ~~l~~s~~~~~l~~~s---d----g~i~vwd~~~~~~~~~~~~~~~---~v~~l~~s~~d~~~la~g~------------  871 (1106)
                      ..+-.-|+|+.++++-   +    |.+.+.|-++.+..........   --..+-+.| ..+.+++..            
T Consensus       133 HT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~  211 (461)
T PF05694_consen  133 HTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFN  211 (461)
T ss_dssp             EEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---
T ss_pred             ceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCC
Confidence            3445557898888772   2    4588999888877766543222   234566677 556666543            


Q ss_pred             --------CCCcEEEEEeecceEEEEecCcc--cCeeEEEEecC--CCEEEE-EcCCCcEEEE-eCCCcccccceeeccc
Q 001295          872 --------DDSSIQIYNVRVDEVKSKLKGHS--KRITGLAFSHA--LNVLVS-SGADSQLCVW-SSDGWEKQKNRFLQIP  937 (1106)
Q Consensus       872 --------~dg~v~iwd~~~~~~~~~l~~h~--~~V~~l~~s~d--~~~l~s-~s~Dg~i~vw-d~~~~~~~~~~~~~~~  937 (1106)
                              ...++.+||+.+.+.++++.--.  .....|.|.++  ..+=++ +.-.++|..| ..+.++-.....+.+.
T Consensus       212 ~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip  291 (461)
T PF05694_consen  212 PEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIP  291 (461)
T ss_dssp             TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE-
T ss_pred             hhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECC
Confidence                    23489999999999999886533  23566777654  333222 2233344444 3233332223333332


Q ss_pred             CCC-------------CCCCCCCceEEEcCCCcEEEEE--eCCeEEEEecCCc---eEeeecccCCC-------------
Q 001295          938 TGR-------------TPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKL---ECVKQWVPRES-------------  986 (1106)
Q Consensus       938 ~~~-------------~~~~~~i~~~~~s~dg~~l~~~--~d~~v~i~d~~~~---~~~~~~~~~~h-------------  986 (1106)
                      ...             .....-|+.+..|.|.++|.++  ..|.|+.||+..-   +.+.+....+-             
T Consensus       292 ~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~  371 (461)
T PF05694_consen  292 AKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKR  371 (461)
T ss_dssp             -EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS----
T ss_pred             CcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccc
Confidence            211             0012467899999999999995  7899999999763   33433332221             


Q ss_pred             -CCCeeEEEECCCCCEEEEEE
Q 001295          987 -SAPITHATFSCDSQLVYACF 1006 (1106)
Q Consensus       987 -~~~v~~l~~s~d~~~l~t~s 1006 (1106)
                       .+...-|..|-||+.|...+
T Consensus       372 l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  372 LRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             --S----EEE-TTSSEEEEE-
T ss_pred             cCCCCCeEEEccCCeEEEEEe
Confidence             12346788899999987654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.73  E-value=3.2  Score=50.45  Aligned_cols=220  Identities=13%  Similarity=0.144  Sum_probs=118.3

Q ss_pred             eEEEeeCCCcEEEEEeecceEEEEecCcccC--------eeEEEEe----------------cCCCEEEEEcCCCcEEEE
Q 001295          866 IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR--------ITGLAFS----------------HALNVLVSSGADSQLCVW  921 (1106)
Q Consensus       866 ~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~--------V~~l~~s----------------~d~~~l~s~s~Dg~i~vw  921 (1106)
                      .|..++.++.|+-.|..+|+.+-++......        ...+++-                .++..|+.++.|+.+.-.
T Consensus       196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL  275 (764)
T TIGR03074       196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL  275 (764)
T ss_pred             EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence            5555677788888888888887666432210        1223332                134578888899999988


Q ss_pred             eCCCccccccee----ecccCCCCCCCCCCceEEEcC---CCcEEEEEe----------CCeEEEEecCCceEeeecccC
Q 001295          922 SSDGWEKQKNRF----LQIPTGRTPTAQSDTRVQFHQ---DQIHFLVVH----------ETQLAIFETTKLECVKQWVPR  984 (1106)
Q Consensus       922 d~~~~~~~~~~~----~~~~~~~~~~~~~i~~~~~s~---dg~~l~~~~----------d~~v~i~d~~~~~~~~~~~~~  984 (1106)
                      |.++++.....-    +....+.......-..+.-+|   ++..++.+.          +|.|+-+|+++|+.+-.+...
T Consensus       276 DA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g  355 (764)
T TIGR03074       276 DADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPG  355 (764)
T ss_pred             ECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecC
Confidence            998887532100    000000000000000111112   344444321          578999999999987665431


Q ss_pred             C----------------CCCCeeEEEECCCCCEEEEEE------------------cCCeEEEEEcCCceeEEeeCCCcc
Q 001295          985 E----------------SSAPITHATFSCDSQLVYACF------------------LDATVCVFSAANLKLRCRINPSAY 1030 (1106)
Q Consensus       985 ~----------------h~~~v~~l~~s~d~~~l~t~s------------------~Dg~i~vwd~~~~~~~~~~~~~~~ 1030 (1106)
                      .                ....-..+++.++...++.+.                  ..++|.-.|.+||+..-.++..++
T Consensus       356 ~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~h  435 (764)
T TIGR03074       356 NPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHH  435 (764)
T ss_pred             CCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCC
Confidence            0                011113445555555544322                  124566679999998877762110


Q ss_pred             -cCCCCCCCCccceEEEEeCCCCC---EEEEEeCCCcEEEEeecCCCCccCCC-CCCCCCCC
Q 001295         1031 -LPAGVSSSNVHPLVIAAHPQEPN---EFALGLSDGGVHVFEPLESEGKWGVP-PPVDNGST 1087 (1106)
Q Consensus      1031 -~~~~~~~~~v~~~~~~~~~~d~~---~l~t~~~Dg~v~vW~~~~~~~~~~~~-~~~~~~~~ 1087 (1106)
                       +-+-  +..-.++.+.+...+|+   .++.++.+|.+++.|-.+|+..|..+ +|...+.+
T Consensus       436 D~WD~--D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e~~vp~~~~  495 (764)
T TIGR03074       436 DLWDM--DVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEEVPVPQGAV  495 (764)
T ss_pred             ccccc--cccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeeceeecCCccCC
Confidence             0000  11111222223221453   78999999999999999999777632 34343433

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PHA02713 hypothetical protein; Provisional

Probab=95.57  E-value=0.72  Score=54.49  Aligned_cols=188  Identities=10%  Similarity=0.061  Sum_probs=95.7

Q ss_pred             cCCCEEEEEe-C------CeEEEEEcCCCceee--eecCCCCCeeEEEEecCCCceEEEeeCCC-----cEEEEEeecce
Q 001295          820 KNDSYVMSAS-G------GKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVDE  885 (1106)
Q Consensus       820 ~~~~~l~~~s-d------g~i~vwd~~~~~~~~--~~~~~~~~v~~l~~s~~d~~~la~g~~dg-----~v~iwd~~~~~  885 (1106)
                      -++...+.|+ +      ..+..||..+.....  .+....... +++. - ++++.+.|+.++     .+..||..+.+
T Consensus       302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~~-~-~g~IYviGG~~~~~~~~sve~Ydp~~~~  378 (557)
T PHA02713        302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLAV-I-DDTIYAIGGQNGTNVERTIECYTMGDDK  378 (557)
T ss_pred             ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEEE-E-CCEEEEECCcCCCCCCceEEEEECCCCe
Confidence            3666667665 3      237788877654321  121111112 2222 2 688888898765     47889987643


Q ss_pred             --EEEEecCcccCeeEEEEecCCCEEEEEcCCC-----------------------cEEEEeCCCcccccceeecccCCC
Q 001295          886 --VKSKLKGHSKRITGLAFSHALNVLVSSGADS-----------------------QLCVWSSDGWEKQKNRFLQIPTGR  940 (1106)
Q Consensus       886 --~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg-----------------------~i~vwd~~~~~~~~~~~~~~~~~~  940 (1106)
                        .+..+.........++  -+|+..+.||.++                       .+..||..+.+   +..+......
T Consensus       379 W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~---W~~v~~m~~~  453 (557)
T PHA02713        379 WKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI---WETLPNFWTG  453 (557)
T ss_pred             EEECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe---EeecCCCCcc
Confidence              3223222111122222  3688888888653                       36677766532   1111111100


Q ss_pred             CCCCCCCceEEEcCCCcEEEEE-eC------CeEEEEecCC-ceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCC--e
Q 001295          941 TPTAQSDTRVQFHQDQIHFLVV-HE------TQLAIFETTK-LECVKQWVPRESSAPITHATFSCDSQLVYACFLDA--T 1010 (1106)
Q Consensus       941 ~~~~~~i~~~~~s~dg~~l~~~-~d------~~v~i~d~~~-~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg--~ 1010 (1106)
                           .....+..-+|+..++| .+      ..+..||..+ .+-...-...........+.+  +|+..++|+.||  +
T Consensus       454 -----r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~  526 (557)
T PHA02713        454 -----TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYML  526 (557)
T ss_pred             -----cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceee
Confidence                 11112223345555554 22      2467899887 443222111111222222233  788888999888  7


Q ss_pred             EEEEEcCCceeE
Q 001295         1011 VCVFSAANLKLR 1022 (1106)
Q Consensus      1011 i~vwd~~~~~~~ 1022 (1106)
                      +..||..+.+-.
T Consensus       527 ~e~yd~~~~~W~  538 (557)
T PHA02713        527 QDTFNVYTYEWN  538 (557)
T ss_pred             hhhcCccccccc
Confidence            777887776544

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.52  E-value=1.3  Score=45.21  Aligned_cols=170  Identities=7%  Similarity=0.047  Sum_probs=112.1

Q ss_pred             ecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeEE
Q 001295          890 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLA  968 (1106)
Q Consensus       890 l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v~  968 (1106)
                      +.|-...|.++.|+|+.+.|++......-.||=...|+.....++....       ....+.+..+|++.++- .++.+.
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~-------DpE~Ieyig~n~fvi~dER~~~l~  153 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS-------DPETIEYIGGNQFVIVDERDRALY  153 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccC-------ChhHeEEecCCEEEEEehhcceEE
Confidence            3454555999999999999999998888888876777765554444432       34778999999998884 778888


Q ss_pred             EEecCCceEeeec-----cc--CCC-CCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCC---
Q 001295          969 IFETTKLECVKQW-----VP--RES-SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSS--- 1037 (1106)
Q Consensus       969 i~d~~~~~~~~~~-----~~--~~h-~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~--- 1037 (1106)
                      ++.+.....+...     ..  ..+ ....-.++|+|....|..+-+-.=+.||.+..+..--...    ....+..   
T Consensus       154 ~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~----~~~~~~~~~~  229 (316)
T COG3204         154 LFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVH----ASLDPTADRD  229 (316)
T ss_pred             EEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccc----cccCcccccc
Confidence            8877655322221     11  122 5567889999999999888877777777765332111110    0001000   


Q ss_pred             ---CCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCC
Q 001295         1038 ---SNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1072 (1106)
Q Consensus      1038 ---~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~ 1072 (1106)
                         ..+.  ++.|.+..+.+|+-+.+++.|...+....
T Consensus       230 ~f~~DvS--gl~~~~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         230 LFVLDVS--GLEFNAITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             eEeeccc--cceecCCCCcEEEEecCCceEEEEecCCC
Confidence               0133  67888777778888888887776665543

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=95.46  E-value=8.5  Score=46.50  Aligned_cols=105  Identities=11%  Similarity=0.121  Sum_probs=67.4

Q ss_pred             EEEecCCCEEEEEeCCeEEEEEcCCCceeeeec--CCCCCeeEEEEecCCCceEEEeeCCCcEEEEEe--ecceEEEEec
Q 001295          816 FALSKNDSYVMSASGGKISLFNMMTFKTMATFM--PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV--RVDEVKSKLK  891 (1106)
Q Consensus       816 l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~--~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~--~~~~~~~~l~  891 (1106)
                      .+..|...++.+|-...+++||+...++++...  .-...|+.+.+   .+..+++|+.--.|..+..  ...++ ..+.
T Consensus       939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt---~~~RI~VgD~qeSV~~~~y~~~~n~l-~~fa 1014 (1205)
T KOG1898|consen  939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT---YGARIVVGDIQESVHFVRYRREDNQL-IVFA 1014 (1205)
T ss_pred             eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee---cceEEEEeeccceEEEEEEecCCCeE-EEEe
Confidence            345577778888888999999998877765533  23456777777   4467777776666655443  33443 3343


Q ss_pred             C--cccCeeEEEEecCCCEEEEEcCCCcEEEEeCCC
Q 001295          892 G--HSKRITGLAFSHALNVLVSSGADSQLCVWSSDG  925 (1106)
Q Consensus       892 ~--h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~  925 (1106)
                      .  -...|+++.+- |-..+|.++.=|.+.+-.+..
T Consensus      1015 dD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1015 DDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred             CCCccceeeEEEEe-cCCceeeccccCcEEEEECCC
Confidence            2  22346666554 556788888778777766544

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.43  E-value=0.04  Score=53.48  Aligned_cols=108  Identities=12%  Similarity=0.027  Sum_probs=59.4

Q ss_pred             EEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEecCCceEeeecccCCC
Q 001295          908 VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRES  986 (1106)
Q Consensus       908 ~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d~~~~~~~~~~~~~~h  986 (1106)
                      .|..-+.||.|+-+++..-+...........          ....---+..+++ +.++.|.+|....-.........+ 
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e----------~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~-  100 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKESCRSERFIDE----------GQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSG-  100 (238)
T ss_pred             hhccccCCcccccchhhhhhhhhhhhhhhhc----------ceeecccCceEEeecccceEEEecCCccchHHHhhhcc-
Confidence            3445567888888877653221110000000          0111122334445 689999999876322222211111 


Q ss_pred             CCCee-EEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295          987 SAPIT-HATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus       987 ~~~v~-~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
                      ...|. .+.-..++.+..+++.||.||.|++.-++.+....
T Consensus       101 ~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g  141 (238)
T KOG2444|consen  101 EESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG  141 (238)
T ss_pred             cccceeccccccccceeEEeccCCceeeeccccCceeeeec
Confidence            22222 23333466688899999999999999988887655

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.35  E-value=0.051  Score=38.83  Aligned_cols=33  Identities=15%  Similarity=0.206  Sum_probs=29.9

Q ss_pred             CCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCce
Q 001295          987 SAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1020 (1106)
Q Consensus       987 ~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~ 1020 (1106)
                      ...|.+++|+|...+||.++.||.|.++++ +++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence            567999999999999999999999999998 444

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.23  E-value=4.5  Score=48.72  Aligned_cols=95  Identities=13%  Similarity=0.103  Sum_probs=60.2

Q ss_pred             CCCCeeEEEEecCCCEEEEEeCCeEEEEEcCC-CceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEE
Q 001295          809 PEEAVPCFALSKNDSYVMSASGGKISLFNMMT-FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK  887 (1106)
Q Consensus       809 ~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~-~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~  887 (1106)
                      ....|..+.++++|++++..+...|.|..+.. +..-..+.+....|.|=.+.- +..++.                   
T Consensus        83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v-~~~~~~-------------------  142 (717)
T PF10168_consen   83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPV-DERFFT-------------------  142 (717)
T ss_pred             CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEe-chhhcc-------------------
Confidence            45678999999999999998877777766642 111122333333333333322 222221                   


Q ss_pred             EEecCcccCeeEEEEecC---CCEEEEEcCCCcEEEEeCCCc
Q 001295          888 SKLKGHSKRITGLAFSHA---LNVLVSSGADSQLCVWSSDGW  926 (1106)
Q Consensus       888 ~~l~~h~~~V~~l~~s~d---~~~l~s~s~Dg~i~vwd~~~~  926 (1106)
                         ..+...|..+.|+|.   +..|+.-..|+++|+||+...
T Consensus       143 ---~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  143 ---SNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             ---CCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence               123455777888886   478888999999999999753

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.15  E-value=3.6  Score=40.42  Aligned_cols=141  Identities=16%  Similarity=0.149  Sum_probs=79.5

Q ss_pred             cCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccC--------CCeEEEeccccCCceEEEEEecCCeEE
Q 001295          457 VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE--------APVYSVCPHHKENIQFIFSTALDGKIK  528 (1106)
Q Consensus       457 ~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~--------~~v~~~~~~~~~~~~~l~s~~~dg~i~  528 (1106)
                      ..+.+.-..+|+|+  +++..-.|-.- +.....|....-+.+|.        +--+.++|..+ ...+-++-+.+-.|.
T Consensus       108 knR~NDgkvdP~Gr--yy~GtMad~~~-~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d-~K~fY~iDsln~~V~  183 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGR--YYGGTMADFGD-DLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSD-AKKFYYIDSLNYEVD  183 (310)
T ss_pred             hcccccCccCCCCc--eeeeeeccccc-cccccccEEEEeccCCCceeeehhccCCcccccccc-CcEEEEEccCceEEe
Confidence            44667777899999  43321111110 11111222222233332        23345677633 234566667788888


Q ss_pred             EEeCCCCCc-------eeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCccee
Q 001295          529 AWLYDNLGS-------RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL  601 (1106)
Q Consensus       529 iwd~~~~~~-------~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  601 (1106)
                      -||.+-...       +..+.... +.  =..-|||              +++..+|+..++.-..++|...|..+|+.+
T Consensus       184 a~dyd~~tG~~snr~~i~dlrk~~-~~--e~~~PDG--------------m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L  246 (310)
T KOG4499|consen  184 AYDYDCPTGDLSNRKVIFDLRKSQ-PF--ESLEPDG--------------MTIDTEGNLYVATFNGGTVQKVDPTTGKIL  246 (310)
T ss_pred             eeecCCCcccccCcceeEEeccCC-Cc--CCCCCCc--------------ceEccCCcEEEEEecCcEEEEECCCCCcEE
Confidence            888542211       11111100 00  0112333              344567788888889999999999999999


Q ss_pred             EEEccCCCCCCcCeEEEcc
Q 001295          602 TSIDADGGLPASPRIRFNK  620 (1106)
Q Consensus       602 ~~~~~~~~~~~v~~v~~s~  620 (1106)
                      ..+...  ...++|++|--
T Consensus       247 ~eiklP--t~qitsccFgG  263 (310)
T KOG4499|consen  247 LEIKLP--TPQITSCCFGG  263 (310)
T ss_pred             EEEEcC--CCceEEEEecC
Confidence            999877  56899999965

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.03  E-value=1.6  Score=42.77  Aligned_cols=142  Identities=11%  Similarity=0.089  Sum_probs=84.4

Q ss_pred             CCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcc--------cCeeEEEEecCCCEEE-EEcCCCcEEEEe
Q 001295          852 PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS--------KRITGLAFSHALNVLV-SSGADSQLCVWS  922 (1106)
Q Consensus       852 ~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~--------~~V~~l~~s~d~~~l~-s~s~Dg~i~vwd  922 (1106)
                      ...+.-..+| +|++.+-...|-. .++....+.+..-+.+|.        +--+.++|+.|.+.+. .-+.+-+|.-||
T Consensus       109 nR~NDgkvdP-~Gryy~GtMad~~-~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~d  186 (310)
T KOG4499|consen  109 NRLNDGKVDP-DGRYYGGTMADFG-DDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYD  186 (310)
T ss_pred             cccccCccCC-CCceeeeeecccc-ccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeee
Confidence            3455566788 8888543222211 122222333333333333        2235688988776654 445566787787


Q ss_pred             --CCCcccccceeec-ccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeEEEEecCCceEeeecccCCCCCCeeEEEECC
Q 001295          923 --SDGWEKQKNRFLQ-IPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSC  997 (1106)
Q Consensus       923 --~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~  997 (1106)
                        ..+|.......+- ............-.++...+|.+.++. ..++|.-.|..+|+.+..+...  ...|+|+||--
T Consensus       187 yd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP--t~qitsccFgG  263 (310)
T KOG4499|consen  187 YDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP--TPQITSCCFGG  263 (310)
T ss_pred             cCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC--CCceEEEEecC
Confidence              6666544432222 111111111234566777788887775 6789999999999999988754  78999999954

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.93  E-value=7  Score=43.61  Aligned_cols=138  Identities=15%  Similarity=0.131  Sum_probs=78.7

Q ss_pred             CCeeEEEEecCCCEEEEEe------------CC-eEEEEEcCC--Cce--eeeecCCCCCeeEEEEecCCCceEEEeeCC
Q 001295          811 EAVPCFALSKNDSYVMSAS------------GG-KISLFNMMT--FKT--MATFMPPPPAATFLAFHPQDNNIIAIGMDD  873 (1106)
Q Consensus       811 ~~v~~l~~s~~~~~l~~~s------------dg-~i~vwd~~~--~~~--~~~~~~~~~~v~~l~~s~~d~~~la~g~~d  873 (1106)
                      .....|+|.++|+++++-.            .+ .|.+++-.+  ++.  ...+.........+++.+ ++ +++ +...
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~   90 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPP   90 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCC
Confidence            4467899999999887742            23 677776542  322  233333344568899988 77 444 3444


Q ss_pred             CcEEEE-Eeec-------ce-EEEEecC----cccCeeEEEEecCCCEEEEEcCC-------------------CcEEEE
Q 001295          874 SSIQIY-NVRV-------DE-VKSKLKG----HSKRITGLAFSHALNVLVSSGAD-------------------SQLCVW  921 (1106)
Q Consensus       874 g~v~iw-d~~~-------~~-~~~~l~~----h~~~V~~l~~s~d~~~l~s~s~D-------------------g~i~vw  921 (1106)
                       .|..| |...       .+ ++..+..    +......++|.|||.+.++.+..                   |.|.-+
T Consensus        91 -~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~  169 (367)
T TIGR02604        91 -DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY  169 (367)
T ss_pred             -eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence             34433 4321       11 2222322    23447789999999887766631                   334444


Q ss_pred             eCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE
Q 001295          922 SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV  961 (1106)
Q Consensus       922 d~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~  961 (1106)
                      +.++++.     .....+.    .....++|+++|+++++
T Consensus       170 ~pdg~~~-----e~~a~G~----rnp~Gl~~d~~G~l~~t  200 (367)
T TIGR02604       170 NPDGGKL-----RVVAHGF----QNPYGHSVDSWGDVFFC  200 (367)
T ss_pred             ecCCCeE-----EEEecCc----CCCccceECCCCCEEEE
Confidence            4444321     1122222    24578999999999887

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=94.79  E-value=1.4  Score=48.17  Aligned_cols=203  Identities=11%  Similarity=0.159  Sum_probs=93.6

Q ss_pred             CceEEE-eeCCCcEEEEEeec----ceEEEEecC---cc----cCeeEEEEecCCCEEEEEcC--C----CcEEEEeCCC
Q 001295          864 NNIIAI-GMDDSSIQIYNVRV----DEVKSKLKG---HS----KRITGLAFSHALNVLVSSGA--D----SQLCVWSSDG  925 (1106)
Q Consensus       864 ~~~la~-g~~dg~v~iwd~~~----~~~~~~l~~---h~----~~V~~l~~s~d~~~l~s~s~--D----g~i~vwd~~~  925 (1106)
                      .++|+. |-..+.|+|+|+.+    .++.+.+..   +.    ..-..+-.-|+|..++|+=.  +    |-+.+.|-++
T Consensus        87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t  166 (461)
T PF05694_consen   87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET  166 (461)
T ss_dssp             S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred             CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence            445554 55888999999984    345555543   11    11122333478988888632  2    3477777766


Q ss_pred             cccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEe---------------------CCeEEEEecCCceEeeecccC
Q 001295          926 WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH---------------------ETQLAIFETTKLECVKQWVPR  984 (1106)
Q Consensus       926 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~---------------------d~~v~i~d~~~~~~~~~~~~~  984 (1106)
                      .+.....  ....+.   ..--..+.+.|.-+.++++.                     ..++.+||+.+.+.++.+...
T Consensus       167 f~v~g~W--e~~~~~---~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg  241 (461)
T PF05694_consen  167 FEVKGRW--EKDRGP---QPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLG  241 (461)
T ss_dssp             --EEEE----SB-TT---------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-
T ss_pred             cccccee--ccCCCC---CCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecC
Confidence            4432211  111111   12336678888888777632                     247999999999999998875


Q ss_pred             CCCCCeeEEEECCC--CCE-EEEEEcCCeEEEEEc-CCcee----EEeeCCCc---c-cCC-----CCCCCCccceEEEE
Q 001295          985 ESSAPITHATFSCD--SQL-VYACFLDATVCVFSA-ANLKL----RCRINPSA---Y-LPA-----GVSSSNVHPLVIAA 1047 (1106)
Q Consensus       985 ~h~~~v~~l~~s~d--~~~-l~t~s~Dg~i~vwd~-~~~~~----~~~~~~~~---~-~~~-----~~~~~~v~~~~~~~ 1047 (1106)
                      .....+..|.|..+  ..+ ++.+...++|..|-- +.++-    +..+....   . +|.     +...  -.++.|..
T Consensus       242 ~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P--~LitDI~i  319 (461)
T PF05694_consen  242 EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVP--PLITDILI  319 (461)
T ss_dssp             TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE--------EEE
T ss_pred             CCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCC--CceEeEEE
Confidence            54445777887654  444 333334555555533 44432    22222110   0 100     0000  11236777


Q ss_pred             eCCCCCEEEEEeCCCcEEEEeecCCC
Q 001295         1048 HPQEPNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus      1048 ~~~d~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
                      |.+|..+.++.=.+|.|+.+||++..
T Consensus       320 SlDDrfLYvs~W~~GdvrqYDISDP~  345 (461)
T PF05694_consen  320 SLDDRFLYVSNWLHGDVRQYDISDPF  345 (461)
T ss_dssp             -TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred             ccCCCEEEEEcccCCcEEEEecCCCC
Confidence            77554445566689999999999876

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=94.69  E-value=5.6  Score=40.27  Aligned_cols=259  Identities=11%  Similarity=0.052  Sum_probs=153.3

Q ss_pred             CCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEE
Q 001295          809 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK  887 (1106)
Q Consensus       809 ~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~  887 (1106)
                      .......++-+|||..-.++. .+.|--.|-.+++....--+....-..|..-| |+..-++-+.. .|.-.|-++.+..
T Consensus        60 ~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gp-dg~~Witd~~~-aI~R~dpkt~evt  137 (353)
T COG4257          60 NGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGP-DGSAWITDTGL-AIGRLDPKTLEVT  137 (353)
T ss_pred             CCCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECC-CCCeeEecCcc-eeEEecCcccceE
Confidence            345566788889998888777 57777778888877665555555667778888 44444432222 4555555554322


Q ss_pred             -EE--ecCcccCeeEEEEecCCCEEEEEcCC---------CcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCC
Q 001295          888 -SK--LKGHSKRITGLAFSHALNVLVSSGAD---------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD  955 (1106)
Q Consensus       888 -~~--l~~h~~~V~~l~~s~d~~~l~s~s~D---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~d  955 (1106)
                       ..  ++.-........|.++|.+-+++...         +.|++|+...             |     .....++..||
T Consensus       138 ~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq-------------G-----~gpyGi~atpd  199 (353)
T COG4257         138 RFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ-------------G-----GGPYGICATPD  199 (353)
T ss_pred             EeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC-------------C-----CCCcceEECCC
Confidence             11  12234557788899999988887532         3455555433             2     24578999999


Q ss_pred             CcEEEEE-eCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCC
Q 001295          956 QIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAG 1034 (1106)
Q Consensus       956 g~~l~~~-~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~ 1034 (1106)
                      |....++ .++.|...|..++.....-....-...-..+.-+|.|+.-++....+.+.-||-.+.. -..+.    +|..
T Consensus       200 Gsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eyp----LPgs  274 (353)
T COG4257         200 GSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYP----LPGS  274 (353)
T ss_pred             CcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeee----CCCC
Confidence            9988874 5566666676665322222222212233445557788887887777888888866554 33333    3322


Q ss_pred             CCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCC-CccCCCCCCCCCCCCCCCCCCCCCC
Q 001295         1035 VSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE-GKWGVPPPVDNGSTSSMPATPPVGG 1098 (1106)
Q Consensus      1035 ~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 1098 (1106)
                        ...-+  ++.... .+..-.+--..|.|.-+|..+.. ..+..++| ..|.+..++..--+|.
T Consensus       275 --~arpy--s~rVD~-~grVW~sea~agai~rfdpeta~ftv~p~pr~-n~gn~ql~gr~ge~W~  333 (353)
T COG4257         275 --KARPY--SMRVDR-HGRVWLSEADAGAIGRFDPETARFTVLPIPRP-NSGNIQLDGRPGELWF  333 (353)
T ss_pred             --CCCcc--eeeecc-CCcEEeeccccCceeecCcccceEEEecCCCC-CCCceeccCCCCceee
Confidence              11122  333332 23444444556778888887777 66666666 4446666555544443

>PRK10115 protease 2; Provisional

Probab=94.64  E-value=15  Score=44.87  Aligned_cols=245  Identities=10%  Similarity=0.040  Sum_probs=114.6

Q ss_pred             cceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCC
Q 001295          744 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS  823 (1106)
Q Consensus       744 ~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~  823 (1106)
                      ..+..+.++||+++|+.+.+.+.-.-++                 +.+.++.+|..+...+.+   .  -..++|++|++
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~-----------------l~v~d~~tg~~l~~~i~~---~--~~~~~w~~D~~  184 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYG-----------------IRFRNLETGNWYPELLDN---V--EPSFVWANDSW  184 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEE-----------------EEEEECCCCCCCCccccC---c--ceEEEEeeCCC
Confidence            4567788999999887775542222221                 123344455433222221   1  14599999998


Q ss_pred             EEEEEe-C------CeEEEEEcCCC--ceeeeecCCCCCee-EEEEecCCCceEEEeeC---CCcEEEEEee--cceEEE
Q 001295          824 YVMSAS-G------GKISLFNMMTF--KTMATFMPPPPAAT-FLAFHPQDNNIIAIGMD---DSSIQIYNVR--VDEVKS  888 (1106)
Q Consensus       824 ~l~~~s-d------g~i~vwd~~~~--~~~~~~~~~~~~v~-~l~~s~~d~~~la~g~~---dg~v~iwd~~--~~~~~~  888 (1106)
                      .|+... +      ..|+.+++.++  +....+........ .+..+. ++++++..+.   ++.+.+|+..  +++...
T Consensus       185 ~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~-d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~  263 (686)
T PRK10115        185 TFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTT-SKHYVVIHLASATTSEVLLLDAELADAEPFV  263 (686)
T ss_pred             EEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcC-CCCEEEEEEECCccccEEEEECcCCCCCceE
Confidence            777664 2      25788888877  33333443333333 333343 6666555443   3478888842  333222


Q ss_pred             EecCcccCeeEEEEecCCCEEEEEcCC-CcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE--EeCC
Q 001295          889 KLKGHSKRITGLAFSHALNVLVSSGAD-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHET  965 (1106)
Q Consensus       889 ~l~~h~~~V~~l~~s~d~~~l~s~s~D-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~--~~d~  965 (1106)
                      .+..-.+....+. +..+.+++....+ ...+|..+.-........+.....    ...+..+.+.  +.+|+.  ..++
T Consensus       264 ~~~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~----~~~i~~~~~~--~~~l~~~~~~~g  336 (686)
T PRK10115        264 FLPRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRE----NIMLEGFTLF--TDWLVVEERQRG  336 (686)
T ss_pred             EEECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCC----CCEEEEEEEE--CCEEEEEEEeCC
Confidence            2221122222222 2233333333222 233344332211111122221111    1245667776  334444  3555


Q ss_pred             e--EEEEecCCceEeeecccCCCCCCeeEEEEC--CCCC-EEEEEEc---CCeEEEEEcCCce
Q 001295          966 Q--LAIFETTKLECVKQWVPRESSAPITHATFS--CDSQ-LVYACFL---DATVCVFSAANLK 1020 (1106)
Q Consensus       966 ~--v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s--~d~~-~l~t~s~---Dg~i~vwd~~~~~ 1020 (1106)
                      .  +.+++..++. +..+.... ...+..+.++  +++. ++++.+.   -+.++.+|..+++
T Consensus       337 ~~~l~~~~~~~~~-~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~  397 (686)
T PRK10115        337 LTSLRQINRKTRE-VIGIAFDD-PAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE  397 (686)
T ss_pred             EEEEEEEcCCCCc-eEEecCCC-CceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence            4  5555654333 33322111 1223334444  4444 4444432   3679999998875

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=94.61  E-value=5  Score=40.59  Aligned_cols=201  Identities=13%  Similarity=0.134  Sum_probs=127.1

Q ss_pred             CeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccce
Q 001295          853 AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNR  932 (1106)
Q Consensus       853 ~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~  932 (1106)
                      .-..++-+| ||..-.++...|.|--.|..+|+....--+....-..|..-|||..-++-+.. -|.-.|-++.+..   
T Consensus        63 ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt---  137 (353)
T COG4257          63 APFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVT---  137 (353)
T ss_pred             CccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceE---
Confidence            345677778 88888888888888888888888776666666666778888998877765444 3555555554332   


Q ss_pred             eecccCCCCCCCCCCceEEEcCCCcEEEEEeCC----------eEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEE
Q 001295          933 FLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET----------QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLV 1002 (1106)
Q Consensus       933 ~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~----------~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l 1002 (1106)
                      .......+..  .......|.++|++..++..|          .|++|+..            ....-+.|+..|||..-
T Consensus       138 ~f~lp~~~a~--~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP------------qG~gpyGi~atpdGsvw  203 (353)
T COG4257         138 RFPLPLEHAD--ANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP------------QGGGPYGICATPDGSVW  203 (353)
T ss_pred             EeecccccCC--CcccceeeCCCccEEEeeccccceecCcccCceeeeccC------------CCCCCcceEECCCCcEE
Confidence            1222222222  577889999999999885433          34455443            24456788999999988


Q ss_pred             EEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCC-CccCCCCC
Q 001295         1003 YACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE-GKWGVPPP 1081 (1106)
Q Consensus      1003 ~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~-~~~~~~~~ 1081 (1106)
                      ++.-.+..|...|-.++... ++....-+..+     ..  .+--+| -+..-+|....+.++.+|.++.. ..|.++..
T Consensus       204 yaslagnaiaridp~~~~ae-v~p~P~~~~~g-----sR--riwsdp-ig~~wittwg~g~l~rfdPs~~sW~eypLPgs  274 (353)
T COG4257         204 YASLAGNAIARIDPFAGHAE-VVPQPNALKAG-----SR--RIWSDP-IGRAWITTWGTGSLHRFDPSVTSWIEYPLPGS  274 (353)
T ss_pred             EEeccccceEEcccccCCcc-eecCCCccccc-----cc--ccccCc-cCcEEEeccCCceeeEeCcccccceeeeCCCC
Confidence            87777777777787776332 33311211212     11  232334 36667777777788888776655 34444433

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.49  E-value=6  Score=40.61  Aligned_cols=189  Identities=11%  Similarity=0.080  Sum_probs=102.2

Q ss_pred             ccceEEEEEcCCCceEEEeecCc--eEEEeeccccccCCCCccccccCccccCCCCCCccc-cccCCCCCCCCeeEEEEe
Q 001295          743 ATKISRLIFTNSGNAILALASNA--IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT-NDVTDSNPEEAVPCFALS  819 (1106)
Q Consensus       743 ~~~i~~~~~s~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~v~~l~~s  819 (1106)
                      ..-...+.|..++..+-+++.-|  .++.+|+                      .+|+... ..+.   ...--..++..
T Consensus        44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~----------------------~tg~~~~~~~l~---~~~FgEGit~~   98 (264)
T PF05096_consen   44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDL----------------------ETGKVLQSVPLP---PRYFGEGITIL   98 (264)
T ss_dssp             T-EEEEEEEEETTEEEEEECSTTEEEEEEEET----------------------TTSSEEEEEE-T---TT--EEEEEEE
T ss_pred             cccCccEEecCCCEEEEeCCCCCcEEEEEEEC----------------------CCCcEEEEEECC---ccccceeEEEE
Confidence            34456788888888777777765  4554444                      4554332 1121   22233445554


Q ss_pred             cCCCEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcc-----
Q 001295          820 KNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS-----  894 (1106)
Q Consensus       820 ~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~-----  894 (1106)
                      .|.-+.++--++...+||..+.+.+.++.-. +.=..++.   |++.|+..+....++++|..+.+....+.-..     
T Consensus        99 ~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~-~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv  174 (264)
T PF05096_consen   99 GDKLYQLTWKEGTGFVYDPNTLKKIGTFPYP-GEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPV  174 (264)
T ss_dssp             TTEEEEEESSSSEEEEEETTTTEEEEEEE-S-SS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE-
T ss_pred             CCEEEEEEecCCeEEEEccccceEEEEEecC-CcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEEC
Confidence            4433333334899999999999988887643 45566663   55666666667789999988776666554321     


Q ss_pred             cCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeccc-------CCCCCCCCCCceEEEcCCCcEEEE
Q 001295          895 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP-------TGRTPTAQSDTRVQFHQDQIHFLV  961 (1106)
Q Consensus       895 ~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~-------~~~~~~~~~i~~~~~s~dg~~l~~  961 (1106)
                      ..++-|.|- +|...|=.=....|..-|..+|+.....-+...       ....+...-...+|+.|....+.+
T Consensus       175 ~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~v  247 (264)
T PF05096_consen  175 SNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFV  247 (264)
T ss_dssp             --EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEE
T ss_pred             CCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEE
Confidence            245556665 566555554555566667777654332211111       111111234578999887666555

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PRK13684 Ycf48-like protein; Provisional

Probab=94.43  E-value=9.4  Score=41.83  Aligned_cols=156  Identities=10%  Similarity=0.051  Sum_probs=89.4

Q ss_pred             CCCeeEEEEecCCCceEEEeeCCCcEEE-EEeecceEEEE-ecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCccc
Q 001295          851 PPAATFLAFHPQDNNIIAIGMDDSSIQI-YNVRVDEVKSK-LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEK  928 (1106)
Q Consensus       851 ~~~v~~l~~s~~d~~~la~g~~dg~v~i-wd~~~~~~~~~-l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~  928 (1106)
                      ...+..+.+.+ ++.++++|. .|.+.. ++ ..++.-.. -.+-...++++.+.++++.++.+ ..|.+++=..+.++.
T Consensus       172 ~g~~~~i~~~~-~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s  247 (334)
T PRK13684        172 AGVVRNLRRSP-DGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES  247 (334)
T ss_pred             cceEEEEEECC-CCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence            45688999999 777776654 565543 22 11221222 22334678999999998877654 567654322333221


Q ss_pred             ccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCceEeeeccc-CCCCCCeeEEEECCCCCEEEEEEc
Q 001295          929 QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVP-RESSAPITHATFSCDSQLVYACFL 1007 (1106)
Q Consensus       929 ~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~~~~~~~-~~h~~~v~~l~~s~d~~~l~t~s~ 1007 (1106)
                        ..........  ....+..+++.+++..++++.+|.+.. ....++.-..... ..-....+.+.|..+++.+++| .
T Consensus       248 --W~~~~~~~~~--~~~~l~~v~~~~~~~~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~  321 (334)
T PRK13684        248 --WSKPIIPEIT--NGYGYLDLAYRTPGEIWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-Q  321 (334)
T ss_pred             --cccccCCccc--cccceeeEEEcCCCCEEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC-C
Confidence              1111111000  112467889999999888888876653 4444443322221 1113467888888777776655 6


Q ss_pred             CCeEEEEEc
Q 001295         1008 DATVCVFSA 1016 (1106)
Q Consensus      1008 Dg~i~vwd~ 1016 (1106)
                      .|.|--|+-
T Consensus       322 ~G~il~~~~  330 (334)
T PRK13684        322 RGVLLRYVG  330 (334)
T ss_pred             CceEEEecC
Confidence            888887763

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.34  E-value=0.032  Score=64.27  Aligned_cols=178  Identities=13%  Similarity=0.189  Sum_probs=103.5

Q ss_pred             CeEEEEEcC--CCceeeee-----cCCCCCeeEEEEecC--CCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEE
Q 001295          831 GKISLFNMM--TFKTMATF-----MPPPPAATFLAFHPQ--DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLA  901 (1106)
Q Consensus       831 g~i~vwd~~--~~~~~~~~-----~~~~~~v~~l~~s~~--d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~  901 (1106)
                      |.+.||++.  .|+....+     ......+.-+.|.|-  +.-++..+..++.|++........ ..+++|+..++.++
T Consensus       153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a  231 (1283)
T KOG1916|consen  153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMA  231 (1283)
T ss_pred             hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHH
Confidence            678888876  34433222     112223344444331  456777888889998877665332 45667887777765


Q ss_pred             -----------EecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCC-------Cc--EEEE
Q 001295          902 -----------FSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-------QI--HFLV  961 (1106)
Q Consensus       902 -----------~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~d-------g~--~l~~  961 (1106)
                                 .||||..+|.++.||.++.|.+.-..+...+++...+.|..  ....|..|...       +.  ++++
T Consensus       232 ~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~--~p~vC~lc~~~~~~~v~i~~w~~~It  309 (1283)
T KOG1916|consen  232 FFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK--HPRVCWLCHKQEILVVSIGKWVLRIT  309 (1283)
T ss_pred             HHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC--CCceeeeeccccccCCccceeEEEEe
Confidence                       48999999999999999999876555555555555544432  22233334432       22  2333


Q ss_pred             E--eCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCC------------EEEEEEcCCeEEEEEc
Q 001295          962 V--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ------------LVYACFLDATVCVFSA 1016 (1106)
Q Consensus       962 ~--~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~------------~l~t~s~Dg~i~vwd~ 1016 (1106)
                      +  ....+++|.....+|.-.+.    ...|..+. -+||+            .++.-+-|++|.+|.=
T Consensus       310 ttd~nre~k~w~~a~w~Cll~~~----~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn  373 (1283)
T KOG1916|consen  310 TTDVNREEKFWAEAPWQCLLDKL----IDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQN  373 (1283)
T ss_pred             cccCCcceeEeeccchhhhhhhc----ccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhc
Confidence            3  23568888877777763222    22333333 23332            1334556788888863

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=93.82  E-value=2.5  Score=40.69  Aligned_cols=178  Identities=10%  Similarity=0.034  Sum_probs=97.4

Q ss_pred             CCCEEEEEe---CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCe
Q 001295          821 NDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI  897 (1106)
Q Consensus       821 ~~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V  897 (1106)
                      +|.++.+.+   ...|++||+.+++.+..-.-....+..=-...-+..+.+-.-.+|.-.+||..+.+++..+.- .+.=
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y-~GeG  133 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY-EGEG  133 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc-CCcc
Confidence            456666655   367999999998887654322222211111111334555566789999999999888777653 2333


Q ss_pred             eEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEecCCce
Q 001295          898 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLE  976 (1106)
Q Consensus       898 ~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d~~~~~  976 (1106)
                      +.++  .|++-|+.++...+++.-|.++....... .....+..-  ..+..+-|- ||...|- -....|...|.++|+
T Consensus       134 WgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v-~VT~~g~pv--~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGr  207 (262)
T COG3823         134 WGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTV-QVTDDGVPV--SKLNELEWV-DGELYANVWQTTRIARIDPDSGR  207 (262)
T ss_pred             eeee--cCCcceEeeCCceEEEecCHHHhhhcceE-EEEECCeec--ccccceeee-ccEEEEeeeeecceEEEcCCCCc
Confidence            4444  46666777776777777776664332211 111122110  112222221 3444333 244555556666776


Q ss_pred             EeeecccC----------CCCCCeeEEEECCCC-CEEEEE
Q 001295          977 CVKQWVPR----------ESSAPITHATFSCDS-QLVYAC 1005 (1106)
Q Consensus       977 ~~~~~~~~----------~h~~~v~~l~~s~d~-~~l~t~ 1005 (1106)
                      .+..+...          .|..-...|++.|++ ++++||
T Consensus       208 V~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         208 VVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             EEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            65554322          234466788998887 455655

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.77  E-value=1.3  Score=51.61  Aligned_cols=124  Identities=10%  Similarity=0.139  Sum_probs=76.8

Q ss_pred             ecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEec-CcccCeeEEEEe--cCCCEEEEEcCCCcEEEEeC
Q 001295          847 FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK-GHSKRITGLAFS--HALNVLVSSGADSQLCVWSS  923 (1106)
Q Consensus       847 ~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~-~h~~~V~~l~~s--~d~~~l~s~s~Dg~i~vwd~  923 (1106)
                      +.......+-+.-|. -++..++-+....+.|||...+.+..+-. ...+.|.++.|.  |||+.+.+.|-.+.|.++.-
T Consensus        25 ~~T~i~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q  103 (631)
T PF12234_consen   25 FETGISNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ  103 (631)
T ss_pred             EecCCCCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence            333334455555555 45555555555689999998876432221 356789999985  78999999999999999853


Q ss_pred             CCc----ccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEec
Q 001295          924 DGW----EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFET  972 (1106)
Q Consensus       924 ~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~  972 (1106)
                      ...    .......+....-....+..|....|-++|.+++ +..+++.|+|-
T Consensus       104 ~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV-~sGNqlfv~dk  155 (631)
T PF12234_consen  104 LRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVV-GSGNQLFVFDK  155 (631)
T ss_pred             cchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEE-EeCCEEEEECC
Confidence            211    1111111211111111224788999999998655 45677888764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PHA03098 kelch-like protein; Provisional

Probab=93.74  E-value=3  Score=49.51  Aligned_cols=188  Identities=7%  Similarity=-0.009  Sum_probs=91.4

Q ss_pred             cCCCEEEEEe-C------CeEEEEEcCCCceeee--ecCCCCCeeEEEEecCCCceEEEeeCCC-----cEEEEEeecce
Q 001295          820 KNDSYVMSAS-G------GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVDE  885 (1106)
Q Consensus       820 ~~~~~l~~~s-d------g~i~vwd~~~~~~~~~--~~~~~~~v~~l~~s~~d~~~la~g~~dg-----~v~iwd~~~~~  885 (1106)
                      .++..++.|+ +      ..+..||..+.+....  +.........+.  - ++++++.|+.++     .+..||..+++
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~  369 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--F-NNRIYVIGGIYNSISLNTVESWKPGESK  369 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--E-CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence            4556666665 2      2477888876554322  111111222222  2 677888888663     57778876643


Q ss_pred             E--EEEecCcccCeeEEEEecCCCEEEEEcCC------CcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCc
Q 001295          886 V--KSKLKGHSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI  957 (1106)
Q Consensus       886 ~--~~~l~~h~~~V~~l~~s~d~~~l~s~s~D------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~  957 (1106)
                      -  ...+...... .+++ .-+++..+.||.+      ..+..||..+.+   +..+......    .. ...+..-+++
T Consensus       370 W~~~~~lp~~r~~-~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~---W~~~~~~p~~----r~-~~~~~~~~~~  439 (534)
T PHA03098        370 WREEPPLIFPRYN-PCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNK---WSKGSPLPIS----HY-GGCAIYHDGK  439 (534)
T ss_pred             eeeCCCcCcCCcc-ceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCe---eeecCCCCcc----cc-CceEEEECCE
Confidence            2  2222111111 1122 2366777777732      357888887633   1111111100    01 1122334556


Q ss_pred             EEEEEe-C--------CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcC-----CeEEEEEcCCceeE
Q 001295          958 HFLVVH-E--------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLR 1022 (1106)
Q Consensus       958 ~l~~~~-d--------~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~D-----g~i~vwd~~~~~~~ 1022 (1106)
                      .++.|+ .        ..+.+||..+.+-...-...........+.+  +++.++.|+.+     ..|.+||..+.+-.
T Consensus       440 iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~  516 (534)
T PHA03098        440 IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNTWT  516 (534)
T ss_pred             EEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCEEE
Confidence            555542 1        2388899887654332111111111112222  67777777654     46888888776543

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.68  E-value=1.6  Score=50.90  Aligned_cols=124  Identities=10%  Similarity=0.098  Sum_probs=76.1

Q ss_pred             CeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEe-ccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCc
Q 001295          459 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS  537 (1106)
Q Consensus       459 ~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  537 (1106)
                      ...-+.-|.-++  ..+..+...++.|||.+.+.....-. ...+.|.++.|...++++.+++.|..+.|.++--.....
T Consensus        31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy  108 (631)
T PF12234_consen   31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY  108 (631)
T ss_pred             CcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence            444455555555  34444556689999999887554332 357899999999999999999999999999984321000


Q ss_pred             eeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEEC
Q 001295          538 RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM  595 (1106)
Q Consensus       538 ~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~  595 (1106)
                      ... ...-..+..+.        +..++..+|....|.++|..++++  ++.+.|++-
T Consensus       109 ~~~-~p~w~~i~~i~--------i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk  155 (631)
T PF12234_consen  109 TNK-GPSWAPIRKID--------ISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK  155 (631)
T ss_pred             hcC-CcccceeEEEE--------eecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence            000 00001122222        223344466677777777655544  357788764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=93.54  E-value=23  Score=43.10  Aligned_cols=111  Identities=11%  Similarity=-0.003  Sum_probs=71.5

Q ss_pred             ceEEEcCCCcEEEEEeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEE--EcCCceeEEee
Q 001295          948 TRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVF--SAANLKLRCRI 1025 (1106)
Q Consensus       948 ~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vw--d~~~~~~~~~~ 1025 (1106)
                      .-.+..|-..++.++-...+++||+-..+..+......-...|+++.+  .+..++.|...-.|.++  +-+..+++.-.
T Consensus       937 ~v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~fa 1014 (1205)
T KOG1898|consen  937 PVGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIVFA 1014 (1205)
T ss_pred             cceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEEEe
Confidence            345677877788888889999999988877666554333567788877  45678877766555554  44444444322


Q ss_pred             CCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecC
Q 001295         1026 NPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1071 (1106)
Q Consensus      1026 ~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~ 1071 (1106)
                        .+..|..     |.  .+.+.  |-..++.+..=|.+.+-++..
T Consensus      1015 --dD~~pR~-----Vt--~~~~l--D~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1015 --DDPVPRH-----VT--ALELL--DYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred             --CCCccce-----ee--EEEEe--cCCceeeccccCcEEEEECCC
Confidence              2233322     33  44444  567888888888887777654

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=93.26  E-value=4.4  Score=47.89  Aligned_cols=193  Identities=9%  Similarity=0.065  Sum_probs=100.5

Q ss_pred             eEEEEecCCCEEEEEe-C-C-----eEEEEEcCCCceee--eecCCCCCeeEEEEecCCCceEEEeeCCC-----cEEEE
Q 001295          814 PCFALSKNDSYVMSAS-G-G-----KISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIY  879 (1106)
Q Consensus       814 ~~l~~s~~~~~l~~~s-d-g-----~i~vwd~~~~~~~~--~~~~~~~~v~~l~~s~~d~~~la~g~~dg-----~v~iw  879 (1106)
                      .++++- ++...++|+ | |     ++..||..+.+...  .+...........+   +|.+.|+|+.||     +|..|
T Consensus       326 ~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l---~g~iYavGG~dg~~~l~svE~Y  401 (571)
T KOG4441|consen  326 VGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL---DGKLYAVGGFDGEKSLNSVECY  401 (571)
T ss_pred             ccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE---CCEEEEEeccccccccccEEEe
Confidence            344443 556667776 6 3     47788887665433  12222222222222   789999999997     46777


Q ss_pred             Eeecce--EEEEecCcccCeeEEEEecCCCEEEEEcCCC------cEEEEeCCCcccccceeecccCCCCCCCCCCceEE
Q 001295          880 NVRVDE--VKSKLKGHSKRITGLAFSHALNVLVSSGADS------QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ  951 (1106)
Q Consensus       880 d~~~~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  951 (1106)
                      |..+.+  .+..+.........+  .-+|+..+.||.|+      ++..||..+..=.....+.....       -..++
T Consensus       402 Dp~~~~W~~va~m~~~r~~~gv~--~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~-------~~g~a  472 (571)
T KOG4441|consen  402 DPVTNKWTPVAPMLTRRSGHGVA--VLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRS-------GFGVA  472 (571)
T ss_pred             cCCCCcccccCCCCcceeeeEEE--EECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccc-------cceEE
Confidence            776543  222222211212222  23688888888664      46777777643222112222111       12233


Q ss_pred             EcCCCcEEEE-EeCC-----eEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCC-----eEEEEEcCCce
Q 001295          952 FHQDQIHFLV-VHET-----QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-----TVCVFSAANLK 1020 (1106)
Q Consensus       952 ~s~dg~~l~~-~~d~-----~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg-----~i~vwd~~~~~ 1020 (1106)
                       .-++...++ |.|+     +|..||..+.+-...-........+....+  +++..++|+.||     +|..||..+.+
T Consensus       473 -~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~  549 (571)
T KOG4441|consen  473 -VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT  549 (571)
T ss_pred             -EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCCc
Confidence             334555555 5444     488899887765444222111222222222  566677787775     47777766655


Q ss_pred             eE
Q 001295         1021 LR 1022 (1106)
Q Consensus      1021 ~~ 1022 (1106)
                      -.
T Consensus       550 W~  551 (571)
T KOG4441|consen  550 WT  551 (571)
T ss_pred             ee
Confidence            44

>PRK13684 Ycf48-like protein; Provisional

Probab=93.24  E-value=15  Score=40.19  Aligned_cols=157  Identities=11%  Similarity=0.016  Sum_probs=87.2

Q ss_pred             ccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecC
Q 001295          894 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETT  973 (1106)
Q Consensus       894 ~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~  973 (1106)
                      ...+.++.+.+++.+++++ ..|.+.. ..+.+. .........     ....+..+.+.++++.++++..|.+.+=..+
T Consensus       172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~-s~~~gg-~tW~~~~~~-----~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d  243 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVS-SRGNFYS-TWEPGQ-TAWTPHQRN-----SSRRLQSMGFQPDGNLWMLARGGQIRFNDPD  243 (334)
T ss_pred             cceEEEEEECCCCeEEEEe-CCceEEE-EcCCCC-CeEEEeeCC-----CcccceeeeEcCCCCEEEEecCCEEEEccCC
Confidence            4568899999998766555 4554432 111111 011112111     1246789999999998888877776533344


Q ss_pred             CceEeeecccC--CCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCC
Q 001295          974 KLECVKQWVPR--ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1051 (1106)
Q Consensus       974 ~~~~~~~~~~~--~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d 1051 (1106)
                      .+..-......  .-...+.++.+.+++..++++ .+|.|. ...+.|+.-..+......+.     ..+  .+.|..  
T Consensus       244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~-----~~~--~~~~~~--  312 (334)
T PRK13684        244 DLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPS-----NFY--KIVFLD--  312 (334)
T ss_pred             CCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCc-----ceE--EEEEeC--
Confidence            44332211110  113457889999988766654 677665 45565654443321111111     133  566664  


Q ss_pred             CCEEEEEeCCCcEEEEee
Q 001295         1052 PNEFALGLSDGGVHVFEP 1069 (1106)
Q Consensus      1052 ~~~l~t~~~Dg~v~vW~~ 1069 (1106)
                      ++..+..+..|.|..|+-
T Consensus       313 ~~~~~~~G~~G~il~~~~  330 (334)
T PRK13684        313 PEKGFVLGQRGVLLRYVG  330 (334)
T ss_pred             CCceEEECCCceEEEecC
Confidence            344555667899887764

>PHA03098 kelch-like protein; Provisional

Probab=93.23  E-value=5.2  Score=47.56  Aligned_cols=193  Identities=13%  Similarity=0.087  Sum_probs=93.2

Q ss_pred             CCceEEEeeCCC------cEEEEEeecceEEE--EecCcccCeeEEEEecCCCEEEEEcCC-----CcEEEEeCCCcccc
Q 001295          863 DNNIIAIGMDDS------SIQIYNVRVDEVKS--KLKGHSKRITGLAFSHALNVLVSSGAD-----SQLCVWSSDGWEKQ  929 (1106)
Q Consensus       863 d~~~la~g~~dg------~v~iwd~~~~~~~~--~l~~h~~~V~~l~~s~d~~~l~s~s~D-----g~i~vwd~~~~~~~  929 (1106)
                      ++.+++.|+.++      .+..||..+.+-..  .+.........+  .-+++..+.||.+     ..+..||..+.+  
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~--  369 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGESK--  369 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCCc--
Confidence            566777776543      57778877654321  111111111222  2367788888865     346777776632  


Q ss_pred             cceeecccCCCCCCCCCCceEEEcCCCcEEEEEe---C----CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEE
Q 001295          930 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH---E----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLV 1002 (1106)
Q Consensus       930 ~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~---d----~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l 1002 (1106)
                       +........  +  ..-.++ ..-+++..+.|+   +    +.+..||..+.+-...-.... ...-.++ ...++...
T Consensus       370 -W~~~~~lp~--~--r~~~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~-~r~~~~~-~~~~~~iy  441 (534)
T PHA03098        370 -WREEPPLIF--P--RYNPCV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPI-SHYGGCA-IYHDGKIY  441 (534)
T ss_pred             -eeeCCCcCc--C--CccceE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCc-cccCceE-EEECCEEE
Confidence             111111110  0  011122 233556556542   1    458899988765432211111 1111122 22356666


Q ss_pred             EEEEcC--------CeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCC-----CcEEEEee
Q 001295         1003 YACFLD--------ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-----GGVHVFEP 1069 (1106)
Q Consensus      1003 ~t~s~D--------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~D-----g~v~vW~~ 1069 (1106)
                      +.|+.+        ..+.+||..+++-...-.    .+.....   .  .++..  ++.+++.|+.+     +.+.++|+
T Consensus       442 v~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~----~~~~r~~---~--~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~  510 (534)
T PHA03098        442 VIGGISYIDNIKVYNIVESYNPVTNKWTELSS----LNFPRIN---A--SLCIF--NNKIYVVGGDKYEYYINEIEVYDD  510 (534)
T ss_pred             EECCccCCCCCcccceEEEecCCCCceeeCCC----CCccccc---c--eEEEE--CCEEEEEcCCcCCcccceeEEEeC
Confidence            666543        238888988776543211    1111001   1  12222  46788888765     46777877


Q ss_pred             cCCCCccCCCC
Q 001295         1070 LESEGKWGVPP 1080 (1106)
Q Consensus      1070 ~~~~~~~~~~~ 1080 (1106)
                      .+.+  |....
T Consensus       511 ~~~~--W~~~~  519 (534)
T PHA03098        511 KTNT--WTLFC  519 (534)
T ss_pred             CCCE--EEecC
Confidence            7655  65443

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=93.18  E-value=3  Score=40.22  Aligned_cols=183  Identities=11%  Similarity=0.110  Sum_probs=100.7

Q ss_pred             CCceEEEeeCCC--cEEEEEeecceEEEEecCcccCeeEEEEecCCCEEE-EEcCCCcEEEEeCCCcccccceeecccCC
Q 001295          863 DNNIIAIGMDDS--SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLV-SSGADSQLCVWSSDGWEKQKNRFLQIPTG  939 (1106)
Q Consensus       863 d~~~la~g~~dg--~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~-s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~  939 (1106)
                      +++++.+.+.-|  .|++||+.+|+.+..-.-....+..=-...-|..+. -.=.||.-.++|.++.+...     ...-
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg-----~~~y  129 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELG-----RFSY  129 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhc-----cccc
Confidence            567777766544  799999999887754332222222111111122222 22357778888888744322     1111


Q ss_pred             CCCCCCCCceEEEcCCCcEEEEE-eCCeEEEEecCCceEeeecccCCCCCCee---EEEECCCCCEEEEEEcCCeEEEEE
Q 001295          940 RTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPIT---HATFSCDSQLVYACFLDATVCVFS 1015 (1106)
Q Consensus       940 ~~~~~~~i~~~~~s~dg~~l~~~-~d~~v~i~d~~~~~~~~~~~~~~h~~~v~---~l~~s~d~~~l~t~s~Dg~i~vwd 1015 (1106)
                            .-.......|++.|+.+ ....++.-|.++......+.......+|.   .+.|- ||...|-.=.+..|...+
T Consensus       130 ------~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~  202 (262)
T COG3823         130 ------EGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARID  202 (262)
T ss_pred             ------CCcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEc
Confidence                  11344555666666664 44566666766655444433222233333   33332 676666665666677778


Q ss_pred             cCCceeEEeeCCCcccCCC----CCCCCccceEEEEeCCCCCEEEEEe
Q 001295         1016 AANLKLRCRINPSAYLPAG----VSSSNVHPLVIAAHPQEPNEFALGL 1059 (1106)
Q Consensus      1016 ~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~d~~~l~t~~ 1059 (1106)
                      .++|+.+..+..+...+.-    ......+  .+++.|+.+++++||-
T Consensus       203 p~sGrV~~widlS~L~~~~~~~~~~~nvlN--GIA~~~~~~r~~iTGK  248 (262)
T COG3823         203 PDSGRVVAWIDLSGLLKELNLDKSNDNVLN--GIAHDPQQDRFLITGK  248 (262)
T ss_pred             CCCCcEEEEEEccCCchhcCcccccccccc--ceeecCcCCeEEEecC
Confidence            8999988877654433221    1122234  7999997667777773

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=93.05  E-value=13  Score=38.72  Aligned_cols=223  Identities=14%  Similarity=0.200  Sum_probs=121.5

Q ss_pred             CeEEEEEccCCCEEEEEeCCCeEEEEEccCC----ceeeeeeeecc-----ccCCeeEEEEcCCCCc----------eEE
Q 001295          414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG----DEVRQHLEIDA-----HVGGVNDIAFSHPNKQ----------LCV  474 (1106)
Q Consensus       414 ~V~~l~~spdg~~las~~~d~~v~iwd~~~~----~~~~~~~~l~~-----h~~~V~~~~~s~d~~~----------~~l  474 (1106)
                      .-+.|+++|.+.+-++....+...+||....    .......++..     -....+.+.|+.....          ..+
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            4578999999988888777889999998711    11111112221     2345777888754331          136


Q ss_pred             EEecCCCcEEEEeCCCCce-----eEEEe-ccCCCe-EEEeccccCCceEEEEE-ecCCeEEEEeCCCCCcee--EeeCC
Q 001295          475 ITCGDDKTIKVWDATNGAK-----QYIFE-GHEAPV-YSVCPHHKENIQFIFST-ALDGKIKAWLYDNLGSRV--DYEAP  544 (1106)
Q Consensus       475 ~s~~~d~~i~iwd~~~~~~-----~~~~~-~h~~~v-~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~--~~~~~  544 (1106)
                      +.+++||+|.-|...-+..     ...+. +..+.| ..+++.....+.+|+.+ -..++|.++|-.-.....  .+..+
T Consensus       104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP  183 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP  183 (336)
T ss_pred             EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence            7788999999998532222     11222 112222 33444333333445444 357888888754221110  01000


Q ss_pred             CCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEcc----
Q 001295          545 GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK----  620 (1106)
Q Consensus       545 ~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~----  620 (1106)
                      .  + -.-|.|-+-..+  ...--++...-.+++..=+.+..-|.|-+||. .|..++.+...+....-+.++..|    
T Consensus       184 ~--i-PagyAPFnIqni--g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG  257 (336)
T TIGR03118       184 A--L-PAGYAPFNVQNL--GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFG  257 (336)
T ss_pred             C--C-CCCCCCcceEEE--CCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhC
Confidence            0  0 000111100000  00001111122333333455566789999998 678888886555555566777765    


Q ss_pred             --CCCEEEEEeCCCcEEEEEccCC
Q 001295          621 --DGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       621 --~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                        .|.+|+---.||+|..+|..++
T Consensus       258 ~~sg~lLVGNFGDG~InaFD~~sG  281 (336)
T TIGR03118       258 SLSGALLVGNFGDGTINAYDPQSG  281 (336)
T ss_pred             CCCCCeEEeecCCceeEEecCCCC
Confidence              4778887778999999999887

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PHA02790 Kelch-like protein; Provisional

Probab=92.99  E-value=5.8  Score=46.12  Aligned_cols=184  Identities=10%  Similarity=-0.019  Sum_probs=88.6

Q ss_pred             cCCCEEEEEe-C-----CeEEEEEcCCCceee--eecCCCCCeeEEEEecCCCceEEEeeCCC--cEEEEEeecce--EE
Q 001295          820 KNDSYVMSAS-G-----GKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDE--VK  887 (1106)
Q Consensus       820 ~~~~~l~~~s-d-----g~i~vwd~~~~~~~~--~~~~~~~~v~~l~~s~~d~~~la~g~~dg--~v~iwd~~~~~--~~  887 (1106)
                      .++..+++|+ +     .++..||..+.+...  .+.........+  .- ++++.++|+.++  .+..||..+++  .+
T Consensus       270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~-~~~iYviGG~~~~~sve~ydp~~n~W~~~  346 (480)
T PHA02790        270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PA-NNKLYVVGGLPNPTSVERWFHGDAAWVNM  346 (480)
T ss_pred             ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EE-CCEEEEECCcCCCCceEEEECCCCeEEEC
Confidence            3455566665 3     246778877654322  222111122222  23 778888888643  57788876543  22


Q ss_pred             EEecCcccCeeEEEEecCCCEEEEEcCCC---cEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeC
Q 001295          888 SKLKGHSKRITGLAFSHALNVLVSSGADS---QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE  964 (1106)
Q Consensus       888 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d  964 (1106)
                      ..+.......  .+..-+|+..+.||.++   .+..||..+.+   +.........     .-...+..-+|+..+.|  
T Consensus       347 ~~l~~~r~~~--~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~---W~~~~~m~~~-----r~~~~~~~~~~~IYv~G--  414 (480)
T PHA02790        347 PSLLKPRCNP--AVASINNVIYVIGGHSETDTTTEYLLPNHDQ---WQFGPSTYYP-----HYKSCALVFGRRLFLVG--  414 (480)
T ss_pred             CCCCCCCccc--EEEEECCEEEEecCcCCCCccEEEEeCCCCE---EEeCCCCCCc-----cccceEEEECCEEEEEC--
Confidence            2232111111  12233678888888654   46778876532   2221111100     01112233456655555  


Q ss_pred             CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcC-----CeEEEEEcCCce
Q 001295          965 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLK 1020 (1106)
Q Consensus       965 ~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~D-----g~i~vwd~~~~~ 1020 (1106)
                      |.+.+||.++.+-...-......... +++ .-+|+..+.|+.+     .+|.+||..+++
T Consensus       415 G~~e~ydp~~~~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        415 RNAEFYCESSNTWTLIDDPIYPRDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             CceEEecCCCCcEeEcCCCCCCcccc-EEE-EECCEEEEECCcCCCcccceEEEEECCCCe
Confidence            35678888766543221111101112 222 2266777777654     246666665543

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=92.88  E-value=3.8  Score=45.71  Aligned_cols=150  Identities=9%  Similarity=0.088  Sum_probs=79.6

Q ss_pred             cCeeEEEEecCCCEEEEEc-----------CCC-cEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE
Q 001295          895 KRITGLAFSHALNVLVSSG-----------ADS-QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV  962 (1106)
Q Consensus       895 ~~V~~l~~s~d~~~l~s~s-----------~Dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~  962 (1106)
                      .....|+|.++|+++++-.           ..+ .|.+++-..+.-.......+..+.    .....+++.++| ++++.
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l----~~p~Gi~~~~~G-lyV~~   88 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEEL----SMVTGLAVAVGG-VYVAT   88 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCC----CCccceeEecCC-EEEeC
Confidence            3456788999988877653           223 677776543221111111111221    245789999999 44443


Q ss_pred             eCCeEEEE-ecCCc-----e---EeeecccCC--CCCCeeEEEECCCCCEEEEEEcC-------------------CeEE
Q 001295          963 HETQLAIF-ETTKL-----E---CVKQWVPRE--SSAPITHATFSCDSQLVYACFLD-------------------ATVC 1012 (1106)
Q Consensus       963 ~d~~v~i~-d~~~~-----~---~~~~~~~~~--h~~~v~~l~~s~d~~~l~t~s~D-------------------g~i~ 1012 (1106)
                       ...|..| |....     +   .+..+....  +......++|.|||.+.++-+..                   |.|.
T Consensus        89 -~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~  167 (367)
T TIGR02604        89 -PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLF  167 (367)
T ss_pred             -CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEE
Confidence             4445544 44321     1   112232211  23457889999999876644421                   3455


Q ss_pred             EEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCC
Q 001295         1013 VFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG 1062 (1106)
Q Consensus      1013 vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg 1062 (1106)
                      -++.++++.. .+.      .+    ...+..++|++ +|+++++-..++
T Consensus       168 r~~pdg~~~e-~~a------~G----~rnp~Gl~~d~-~G~l~~tdn~~~  205 (367)
T TIGR02604       168 RYNPDGGKLR-VVA------HG----FQNPYGHSVDS-WGDVFFCDNDDP  205 (367)
T ss_pred             EEecCCCeEE-EEe------cC----cCCCccceECC-CCCEEEEccCCC
Confidence            5555554432 111      12    13345799998 688887655443

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.87  E-value=13  Score=43.44  Aligned_cols=181  Identities=11%  Similarity=0.094  Sum_probs=94.7

Q ss_pred             CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEe----cCcccCeeEEEEecCC
Q 001295          831 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL----KGHSKRITGLAFSHAL  906 (1106)
Q Consensus       831 g~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l----~~h~~~V~~l~~s~d~  906 (1106)
                      -.|+||++. |..+..+.-..+.+..+.|+. + .-|++...||+++||++.. +.+...    ......|..+.|..+|
T Consensus        64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~-~-eeLI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~G  139 (829)
T KOG2280|consen   64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSD-D-EELICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNG  139 (829)
T ss_pred             eeEEEEecc-ccchHHHHhcCCCeeeecccC-C-ceEEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecCc
Confidence            348888875 455555444445899999996 4 4566678999999999763 222221    1223345555555555


Q ss_pred             CEEEEEcCCCcEE-EEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE--EeCC--eEEEEecCC--ceEee
Q 001295          907 NVLVSSGADSQLC-VWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHET--QLAIFETTK--LECVK  979 (1106)
Q Consensus       907 ~~l~s~s~Dg~i~-vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~--~~d~--~v~i~d~~~--~~~~~  979 (1106)
                      -.+.+.  +|.+. +-+++....   ..+.-..+..   ..-.+...-+++.....  .-+.  ...++-.+.  .+...
T Consensus       140 Vavlt~--~g~v~~i~~~~~~~~---~~~~diP~~~---~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~  211 (829)
T KOG2280|consen  140 VAVLTV--SGQVILINGVEEPKL---RKMPDIPYNE---LPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHA  211 (829)
T ss_pred             eEEEec--CCcEEEEcCCCcchh---hhCCCCCCcc---CCCcceeEecCCCcceeEEeechhhhhcccceecccccccc
Confidence            333333  33333 333332111   0011101110   01123333233221111  1110  011111111  11111


Q ss_pred             ecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295          980 QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus       980 ~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
                       +.  .-...+..+.+||+.++|+-=..+|.|.+-+++..+..+.+.
T Consensus       212 -~~--~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  212 -LS--WPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN  255 (829)
T ss_pred             -cC--CCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence             11  113578899999999999999999999999999988888877

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=92.86  E-value=4.9  Score=39.55  Aligned_cols=154  Identities=14%  Similarity=0.200  Sum_probs=85.0

Q ss_pred             CeeEEEEecCCCEEEEEeCCeEEEEEcC--CCceeeeecCCCCCeeEEEEecCCCceEEEeeCCC------cEEEE---E
Q 001295          812 AVPCFALSKNDSYVMSASGGKISLFNMM--TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS------SIQIY---N  880 (1106)
Q Consensus       812 ~v~~l~~s~~~~~l~~~sdg~i~vwd~~--~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg------~v~iw---d  880 (1106)
                      ....++.+..+.++++++.++|.+|++.  ..+.+.+|..- +.|..+.++. .|.+|++--++.      .+|+|   .
T Consensus        19 EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr   96 (215)
T PF14761_consen   19 EPTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWR   96 (215)
T ss_pred             CcceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhh
Confidence            3455555554555555668889999988  44556667644 7899999999 899999854332      55665   2


Q ss_pred             ee--cceEE-EEecCc---------------------ccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccc--cceee
Q 001295          881 VR--VDEVK-SKLKGH---------------------SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQ--KNRFL  934 (1106)
Q Consensus       881 ~~--~~~~~-~~l~~h---------------------~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~--~~~~~  934 (1106)
                      ..  ..+.+ ..+-||                     +.++.+++-.|-..-|+.|+. +++.+|.+......  ....+
T Consensus        97 ~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~~~~~~~~~~l  175 (215)
T PF14761_consen   97 SQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQTIQSEKFSFL  175 (215)
T ss_pred             hhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEEEEecccccEE
Confidence            21  11111 122232                     234566666665444555554 46899987764331  11112


Q ss_pred             cccCCCCCCCCCCceEEEcC-----CCcEEEEEeCCeEEEEecC
Q 001295          935 QIPTGRTPTAQSDTRVQFHQ-----DQIHFLVVHETQLAIFETT  973 (1106)
Q Consensus       935 ~~~~~~~~~~~~i~~~~~s~-----dg~~l~~~~d~~v~i~d~~  973 (1106)
                      ......     -+....|.|     -+.|+|..++..++++.+.
T Consensus       176 DFe~~l-----~~~~~~~~p~~v~ic~~yiA~~s~~ev~Vlkl~  214 (215)
T PF14761_consen  176 DFERSL-----IDHIDNFKPTQVAICEGYIAVMSDLEVLVLKLE  214 (215)
T ss_pred             echhhh-----hheecCceEEEEEEEeeEEEEecCCEEEEEEEe
Confidence            211100     011112222     3567777777777777653

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.72  E-value=2  Score=51.91  Aligned_cols=99  Identities=14%  Similarity=0.130  Sum_probs=65.3

Q ss_pred             CeeEEEEecCCC--EEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEE
Q 001295          812 AVPCFALSKNDS--YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK  889 (1106)
Q Consensus       812 ~v~~l~~s~~~~--~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~  889 (1106)
                      ...++.|.|.-.  .++.-.|+.|++..+........--.-....++++|+| .|+.+++|...|++.-|... ++....
T Consensus       157 f~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~-leik~~  234 (1405)
T KOG3630|consen  157 FQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPS-LEIKSE  234 (1405)
T ss_pred             ccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEecc-ccceeeEecCCCeEEEeecc-cceeec
Confidence            345667776543  23333488888887753222211112345689999999 99999999999999988743 443333


Q ss_pred             ecC----cccCeeEEEEecCCCEEEEE
Q 001295          890 LKG----HSKRITGLAFSHALNVLVSS  912 (1106)
Q Consensus       890 l~~----h~~~V~~l~~s~d~~~l~s~  912 (1106)
                      +.+    ...+|.+|+|-....+|++-
T Consensus       235 ip~Pp~~e~yrvl~v~Wl~t~eflvvy  261 (1405)
T KOG3630|consen  235 IPEPPVEENYRVLSVTWLSTQEFLVVY  261 (1405)
T ss_pred             ccCCCcCCCcceeEEEEecceeEEEEe
Confidence            322    24679999998777777653

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.59  E-value=4.6  Score=46.85  Aligned_cols=59  Identities=15%  Similarity=0.287  Sum_probs=36.5

Q ss_pred             CCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeee-eeeccccCCeeEEEEcCCCC
Q 001295          409 KDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQH-LEIDAHVGGVNDIAFSHPNK  470 (1106)
Q Consensus       409 ~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~-~~l~~h~~~V~~~~~s~d~~  470 (1106)
                      -.|. .+..+.||.+.. |++...+|+++||++.... +... .........|..+.|..+|-
T Consensus        81 w~~~-~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~~GV  140 (829)
T KOG2280|consen   81 WKHG-ELIGMGWSDDEE-LICVQKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFHNGV  140 (829)
T ss_pred             hcCC-CeeeecccCCce-EEEEeccceEEEeecchhh-hcccccccccccCceeEEEEecCce
Confidence            3444 788999997665 5556799999999987532 2211 01122334566666666654

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=92.35  E-value=22  Score=39.75  Aligned_cols=151  Identities=9%  Similarity=-0.019  Sum_probs=84.2

Q ss_pred             eeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCce
Q 001295          897 ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLE  976 (1106)
Q Consensus       897 V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~  976 (1106)
                      ...+..++||.+++.+..-..++-||-..  . ....+....     ...+..+.|.+++..++++..|.+.. ....++
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~--~-~W~~~~~~~-----~~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~  311 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQ--P-YWQPHNRAS-----ARRIQNMGWRADGGLWLLTRGGGLYV-SKGTGL  311 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCCCC--c-ceEEecCCC-----ccceeeeeEcCCCCEEEEeCCceEEE-ecCCCC
Confidence            44556778887777665444334444322  0 011122221     13678899999999998887777644 333332


Q ss_pred             -----EeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCC
Q 001295          977 -----CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1051 (1106)
Q Consensus       977 -----~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d 1051 (1106)
                           .........-...++++.|.+++..+++| .+|.+.... +.|+.-.........+     ...+  .+.|.+  
T Consensus       312 ~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~-----~~ly--~v~f~~--  380 (398)
T PLN00033        312 TEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIA-----ANLY--SVKFFD--  380 (398)
T ss_pred             cccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCC-----ccee--EEEEcC--
Confidence                 11221111113458999999888877665 688777654 5555543332111111     2255  788775  


Q ss_pred             CCEEEEEeCCCcEEEE
Q 001295         1052 PNEFALGLSDGGVHVF 1067 (1106)
Q Consensus      1052 ~~~l~t~~~Dg~v~vW 1067 (1106)
                      .+.....+.+|.|.-|
T Consensus       381 ~~~g~~~G~~G~il~~  396 (398)
T PLN00033        381 DKKGFVLGNDGVLLRY  396 (398)
T ss_pred             CCceEEEeCCcEEEEe
Confidence            3455555668887655

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=92.20  E-value=23  Score=39.65  Aligned_cols=158  Identities=8%  Similarity=0.074  Sum_probs=85.7

Q ss_pred             CCCCceEEEEecCCCcEEEEeCCCCc-----eeEEEeccCCCeEEEeccc--cCCceEEEEEecCCeEEEEeCCCCCcee
Q 001295          467 HPNKQLCVITCGDDKTIKVWDATNGA-----KQYIFEGHEAPVYSVCPHH--KENIQFIFSTALDGKIKAWLYDNLGSRV  539 (1106)
Q Consensus       467 ~d~~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~h~~~v~~~~~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~  539 (1106)
                      ++++. .++.|+..|.++|++...+.     .+-+. .-..+|..+..-.  .......++.-.-..+.+|.+.......
T Consensus        34 ~~~~d-~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~  111 (418)
T PF14727_consen   34 PSGSD-KIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTV  111 (418)
T ss_pred             CCCcc-EEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCc
Confidence            34444 79999999999999986433     11121 2457787776321  1112233344556677777663221110


Q ss_pred             EeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcC----C-CCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcC
Q 001295          540 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT----T-KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASP  614 (1106)
Q Consensus       540 ~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~----~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~  614 (1106)
                         .++.. ..+.      .++..+-......+++.|    . ..++.+-+.||.+.+|+-+.......+...   --.-
T Consensus       112 ---~~g~~-~~L~------~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~---llPg  178 (418)
T PF14727_consen  112 ---EHGNQ-YQLE------LIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDF---LLPG  178 (418)
T ss_pred             ---ccCcE-EEEE------EEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCC---CCCc
Confidence               00000 0000      000010011111122222    1 246777899999999998765544444432   1234


Q ss_pred             eEEEccCCCEEEEEeCCCcEEEEEc
Q 001295          615 RIRFNKDGCLLAVSTNDNGIKILAT  639 (1106)
Q Consensus       615 ~v~~s~~~~~l~~~~~dg~i~iwd~  639 (1106)
                      .+.|.+....+++++.+..+.-|..
T Consensus       179 Pl~Y~~~tDsfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  179 PLCYCPRTDSFVTASSSWTLECYKY  203 (418)
T ss_pred             CeEEeecCCEEEEecCceeEEEecH
Confidence            5899999899999998888877754

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.92  E-value=1.8  Score=52.27  Aligned_cols=146  Identities=13%  Similarity=0.103  Sum_probs=93.6

Q ss_pred             CCCeeEEEEecCCCEEEEEe--C-CeEEEEEcCCCceee-----eecCC------CCCeeEEEEecCCCceEEEeeCCCc
Q 001295          810 EEAVPCFALSKNDSYVMSAS--G-GKISLFNMMTFKTMA-----TFMPP------PPAATFLAFHPQDNNIIAIGMDDSS  875 (1106)
Q Consensus       810 ~~~v~~l~~s~~~~~l~~~s--d-g~i~vwd~~~~~~~~-----~~~~~------~~~v~~l~~s~~d~~~la~g~~dg~  875 (1106)
                      ...+..+.+.+|+...++..  + ..|..||+.+...-.     -+..|      ..-..++.|.|.-....|+...|+.
T Consensus       100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls  179 (1405)
T KOG3630|consen  100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS  179 (1405)
T ss_pred             cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence            44566777788877666554  3 358999987543221     11111      2335677788743445677788999


Q ss_pred             EEEEEeecc-eEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcC
Q 001295          876 IQIYNVRVD-EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ  954 (1106)
Q Consensus       876 v~iwd~~~~-~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~  954 (1106)
                      |++..+.-. .....+ .....+++++|+|-|+.++.|-..|++.-|...-..+     ..+..-.......|.+++|-.
T Consensus       180 l~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik-----~~ip~Pp~~e~yrvl~v~Wl~  253 (1405)
T KOG3630|consen  180 LRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIK-----SEIPEPPVEENYRVLSVTWLS  253 (1405)
T ss_pred             hhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeeccccee-----ecccCCCcCCCcceeEEEEec
Confidence            998876532 222222 2456789999999999999999999999887554211     111111111135788999988


Q ss_pred             CCcEEEE
Q 001295          955 DQIHFLV  961 (1106)
Q Consensus       955 dg~~l~~  961 (1106)
                      .-.++++
T Consensus       254 t~eflvv  260 (1405)
T KOG3630|consen  254 TQEFLVV  260 (1405)
T ss_pred             ceeEEEE
Confidence            8888877

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=91.89  E-value=14  Score=36.50  Aligned_cols=149  Identities=11%  Similarity=0.127  Sum_probs=86.5

Q ss_pred             ceEEEeeCCCcEEEEEee--cceEEEEecCcccCeeEEEEecCCCEEEEEcCC------CcEEEE-eCCCcccccceeec
Q 001295          865 NIIAIGMDDSSIQIYNVR--VDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD------SQLCVW-SSDGWEKQKNRFLQ  935 (1106)
Q Consensus       865 ~~la~g~~dg~v~iwd~~--~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D------g~i~vw-d~~~~~~~~~~~~~  935 (1106)
                      ..|..+...+.|.+|++.  ..+.+.+|..- +.|..+.++..|++|++-=.+      ..+|+| |.+...........
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            344444667789999988  34566666644 789999999999999986332      256665 22211000000000


Q ss_pred             ccCCC------------------CCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCceE-ee-----ecc---cCCC-C
Q 001295          936 IPTGR------------------TPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLEC-VK-----QWV---PRES-S  987 (1106)
Q Consensus       936 ~~~~~------------------~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~-~~-----~~~---~~~h-~  987 (1106)
                      ...||                  .+....+.+++..|-..-|+++.++.+.+|.+..... ..     .+.   ...| +
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~  187 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDN  187 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhheecC
Confidence            00010                  1122466888888887778888889999998765443 11     110   0011 2


Q ss_pred             CCeeEEEECCCCCEEEEEEcCCeEEEEEcC
Q 001295          988 APITHATFSCDSQLVYACFLDATVCVFSAA 1017 (1106)
Q Consensus       988 ~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~ 1017 (1106)
                      -.+..++|  .+.|+|..+ |-.++++.+.
T Consensus       188 ~~p~~v~i--c~~yiA~~s-~~ev~Vlkl~  214 (215)
T PF14761_consen  188 FKPTQVAI--CEGYIAVMS-DLEVLVLKLE  214 (215)
T ss_pred             ceEEEEEE--EeeEEEEec-CCEEEEEEEe
Confidence            23455565  466888765 6677777653

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=91.87  E-value=2.2  Score=48.67  Aligned_cols=78  Identities=15%  Similarity=0.324  Sum_probs=53.7

Q ss_pred             CcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCC
Q 001295          412 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG  491 (1106)
Q Consensus       412 ~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~  491 (1106)
                      ...++++.-+|.|+-++.+..||+|++|+.......+    +.....+-..+.|...|    +++...|+.+--|. ++|
T Consensus        14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qsk----i~~~~~p~~nlv~tnhg----l~~~tsdrr~la~~-~dg   84 (1636)
T KOG3616|consen   14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSK----ICEEAKPKENLVFTNHG----LVTATSDRRALAWK-EDG   84 (1636)
T ss_pred             cceeeeeeecCCCceEEEEecCCcEEEEeecccchhh----hhhhcCCccceeeeccc----eEEEeccchhheee-ccC
Confidence            4467888888999999999999999999987643321    22233455566776554    56666788888886 566


Q ss_pred             ceeEEEe
Q 001295          492 AKQYIFE  498 (1106)
Q Consensus       492 ~~~~~~~  498 (1106)
                      -..+.|.
T Consensus        85 vvqqqfd   91 (1636)
T KOG3616|consen   85 VVQQQFD   91 (1636)
T ss_pred             cchhhcc
Confidence            5544443

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=91.78  E-value=0.39  Score=55.90  Aligned_cols=163  Identities=15%  Similarity=0.170  Sum_probs=93.5

Q ss_pred             CCCCcEEEEEe----cCCCeEEEEEeccCcEEEEecC--CcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc
Q 001295          349 QGSSPMSMDFH----PVQQTLLLVGTNVGDIGLWEVG--SRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  422 (1106)
Q Consensus       349 h~~~v~~~~~s----p~g~~llatg~~dg~i~iwd~~--~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp  422 (1106)
                      -.+.|-.++|-    |.++. +     -|...|||++  .|+......+++              ...-...+.-+.|.|
T Consensus       131 f~G~v~dl~fah~~~pk~~~-~-----vg~lfVy~vd~l~G~iq~~l~v~~--------------~~p~gs~~~~V~wcp  190 (1283)
T KOG1916|consen  131 FPGGVGDLQFAHTKCPKGRR-L-----VGELFVYDVDVLQGEIQPQLEVTP--------------ITPYGSDPQLVSWCP  190 (1283)
T ss_pred             CCCCcccccccccCChHHHH-H-----hhhhheeehHhhccccccceEEee--------------cCcCCCCcceeeecc
Confidence            45667777774    33331 2     2678899876  344433222222              222223344555555


Q ss_pred             ---CCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEE-----------cCCCCceEEEEecCCCcEEEEeC
Q 001295          423 ---DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF-----------SHPNKQLCVITCGDDKTIKVWDA  488 (1106)
Q Consensus       423 ---dg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~-----------s~d~~~~~l~s~~~d~~i~iwd~  488 (1106)
                         +.-++..+-.+++|++..+++...  .  .+.+|...+..++|           ||||+  .|+....||.++.|.+
T Consensus       191 ~~~~~~~ic~~~~~~~i~lL~~~ra~~--~--l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt--v~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  191 IAVNKVYICYGLKGGEIRLLNINRALR--S--LFRSHSQRVTDMAFFAEGVLKLASLSPDGT--VFAWAISDGSVGFYQI  264 (1283)
T ss_pred             cccccceeeeccCCCceeEeeechHHH--H--HHHhcCCCcccHHHHhhchhhheeeCCCCc--EEEEeecCCccceeee
Confidence               677787788889999887776443  1  35678888777665           78888  7888888888887765


Q ss_pred             C-----CCceeEEEeccCCCeEEEeccccCC---------ceEEEEEec-CCeEEEEeCCCCCce
Q 001295          489 T-----NGAKQYIFEGHEAPVYSVCPHHKEN---------IQFIFSTAL-DGKIKAWLYDNLGSR  538 (1106)
Q Consensus       489 ~-----~~~~~~~~~~h~~~v~~~~~~~~~~---------~~~l~s~~~-dg~i~iwd~~~~~~~  538 (1106)
                      .     ..+|+...+.|++.-. +||....+         -.++++++. ...+++|......+.
T Consensus       265 yi~g~~~~rclhewkphd~~p~-vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  265 YITGKIVHRCLHEWKPHDKHPR-VCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             eeeccccHhhhhccCCCCCCCc-eeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            3     2345556666663221 12221111         123444443 556888865544443

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=91.68  E-value=10  Score=41.91  Aligned_cols=157  Identities=15%  Similarity=0.119  Sum_probs=91.5

Q ss_pred             eEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccC------CceEEEEEecCCeEEEEeCCC
Q 001295          461 NDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE------NIQFIFSTALDGKIKAWLYDN  534 (1106)
Q Consensus       461 ~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~------~~~~l~s~~~dg~i~iwd~~~  534 (1106)
                      .-+-...++..+++..|+....++--|++.|+.+-.+.-|...|  +.+.|..      +.+.|+ |-.+..|.-.|.+.
T Consensus       470 ~K~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~  546 (776)
T COG5167         470 EKIMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRA  546 (776)
T ss_pred             hhceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEE-eecccceEEecccc
Confidence            33344444555567778888889999999999999998777653  3443332      122344 44444454445554


Q ss_pred             CCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcC
Q 001295          535 LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASP  614 (1106)
Q Consensus       535 ~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~  614 (1106)
                      .+..........-.+.-.|+                +. ......++++++..|.|++||.-..+....+.+-+.  .|.
T Consensus       547 ~gNKi~v~esKdY~tKn~Fs----------------s~-~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~--aIk  607 (776)
T COG5167         547 RGNKIKVVESKDYKTKNKFS----------------SG-MTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGD--AIK  607 (776)
T ss_pred             cCCceeeeeehhcccccccc----------------cc-ccccCceEEEecCCCceeeehhhcchhhhcCccccc--cee
Confidence            33211111111111111111                11 112234799999999999999655444444444433  688


Q ss_pred             eEEEccCCCEEEEEeCCCcEEEEEcc
Q 001295          615 RIRFNKDGCLLAVSTNDNGIKILATS  640 (1106)
Q Consensus       615 ~v~~s~~~~~l~~~~~dg~i~iwd~~  640 (1106)
                      .+..+.+|+++++.+. ..+.+-|+.
T Consensus       608 ~idvta~Gk~ilaTCk-~yllL~d~~  632 (776)
T COG5167         608 HIDVTANGKHILATCK-NYLLLTDVP  632 (776)
T ss_pred             eeEeecCCcEEEEeec-ceEEEEecc
Confidence            8999999999887776 467777764

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=91.50  E-value=17  Score=38.79  Aligned_cols=189  Identities=11%  Similarity=0.074  Sum_probs=101.7

Q ss_pred             eeEEEEecCCCEEEE--Ee-C----------CeEEEEEcCCCceeeeecCC------CCCeeEEEEecCCC----ceEEE
Q 001295          813 VPCFALSKNDSYVMS--AS-G----------GKISLFNMMTFKTMATFMPP------PPAATFLAFHPQDN----NIIAI  869 (1106)
Q Consensus       813 v~~l~~s~~~~~l~~--~s-d----------g~i~vwd~~~~~~~~~~~~~------~~~v~~l~~s~~d~----~~la~  869 (1106)
                      |..+...+++++-+.  |. +          -+|.+||+.+.+.++++.-.      ......+.+...++    .++..
T Consensus         3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI   82 (287)
T PF03022_consen    3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI   82 (287)
T ss_dssp             EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred             ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Confidence            455666666664442  22 1          26889999999988775422      34567777776322    23333


Q ss_pred             e-eCCCcEEEEEeecceEEEEecCcc-------------------cCeeEEEEec---CCCEEEEEcCCCcEEEEeCCCc
Q 001295          870 G-MDDSSIQIYNVRVDEVKSKLKGHS-------------------KRITGLAFSH---ALNVLVSSGADSQLCVWSSDGW  926 (1106)
Q Consensus       870 g-~~dg~v~iwd~~~~~~~~~l~~h~-------------------~~V~~l~~s~---d~~~l~s~s~Dg~i~vwd~~~~  926 (1106)
                      + ...+.|.|||+.+++..+.+..+.                   +.+.+++.+|   |+++|.-..-.+ -++|.+.+.
T Consensus        83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~  161 (287)
T PF03022_consen   83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTS  161 (287)
T ss_dssp             EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHH
T ss_pred             eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHH
Confidence            3 344689999999887665554322                   2355566654   566666554433 244544432


Q ss_pred             cccccee---------ecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEecCCce---EeeecccCCC-CCCeeE
Q 001295          927 EKQKNRF---------LQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLE---CVKQWVPRES-SAPITH  992 (1106)
Q Consensus       927 ~~~~~~~---------~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d~~~~~---~~~~~~~~~h-~~~v~~  992 (1106)
                      -......         .+.. |...  .....++++++|..+.+ ...+.|..|+..+.-   ....+..... -..+..
T Consensus       162 ~L~~~~~~~~~~~~~~v~~l-G~k~--~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~  238 (287)
T PF03022_consen  162 VLRDPSLSDAQALASQVQDL-GDKG--SQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDG  238 (287)
T ss_dssp             HHCSTT--HHH-HHHT-EEE-EE-----SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEE
T ss_pred             HhhCccccccccccccceec-cccC--CCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccce
Confidence            1111000         0010 1100  13467899999998888 588899999988621   1122222222 346788


Q ss_pred             EEECC--CCCEEEEE
Q 001295          993 ATFSC--DSQLVYAC 1005 (1106)
Q Consensus       993 l~~s~--d~~~l~t~ 1005 (1106)
                      +.+.+  +|.+.+..
T Consensus       239 ~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  239 LKIDPEGDGYLWVLS  253 (287)
T ss_dssp             EEE-T--TS-EEEEE
T ss_pred             eeeccccCceEEEEE
Confidence            88888  66655544

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=91.32  E-value=13  Score=43.43  Aligned_cols=131  Identities=12%  Similarity=0.189  Sum_probs=77.8

Q ss_pred             CCceEEEcCCCcEEEE-EeCC-----eEEEEecCCceEeeeccc-CCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCC
Q 001295          946 SDTRVQFHQDQIHFLV-VHET-----QLAIFETTKLECVKQWVP-RESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1018 (1106)
Q Consensus       946 ~i~~~~~s~dg~~l~~-~~d~-----~v~i~d~~~~~~~~~~~~-~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~ 1018 (1106)
                      .-..+.|-|.|..+++ +.||     .|.++.-+..+. ..+.. -+-...+..++|.-....++.+ ....|++|-..+
T Consensus       248 ~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrH-Gef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkN  325 (1243)
T COG5290         248 MEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRH-GEFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKN  325 (1243)
T ss_pred             chhccccccCCceeeeeccCCCCCcceEEEEccCCccc-CCccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccc
Confidence            4467899999999998 5444     366665443221 11110 0224456777787666666644 567899998776


Q ss_pred             ceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCCCccCCCCCCCCCCCCC
Q 001295         1019 LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSS 1089 (1106)
Q Consensus      1019 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~~~~~~~~~~~~~~~~~ 1089 (1106)
                      ..-.-...  .+.|.      +.  -+.|+|...+.|...+ .+.|..-..+....+-....|+|+|+..-
T Consensus       326 yhWYLK~e--~~ip~------~s--~vkwhpe~~nTl~f~d-~~~I~~V~f~~k~~~~~s~~p~d~g~~~V  385 (1243)
T COG5290         326 YHWYLKVE--RQIPG------IS--YVKWHPEEKNTLLFRD-GERILRVFFSEKKTHHGSEYPFDNGTSYV  385 (1243)
T ss_pred             eEEEEEEe--ecCCC------cc--eeeeccccCcEEEEec-CCeEEEEEeehhhhcCCcccCccCCceEE
Confidence            65433222  23332      33  5889997666666543 34444444444444456678899987643

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=91.18  E-value=26  Score=38.26  Aligned_cols=163  Identities=12%  Similarity=0.119  Sum_probs=90.8

Q ss_pred             CCCeeEEEEecCCCceEEEeeCCCc------EEEEEeec--c--eEE-----EEecCccc--------CeeEEEEecCCC
Q 001295          851 PPAATFLAFHPQDNNIIAIGMDDSS------IQIYNVRV--D--EVK-----SKLKGHSK--------RITGLAFSHALN  907 (1106)
Q Consensus       851 ~~~v~~l~~s~~d~~~la~g~~dg~------v~iwd~~~--~--~~~-----~~l~~h~~--------~V~~l~~s~d~~  907 (1106)
                      -+.+..+.+.+.++.+++ .+++|.      ++.+++..  +  ..+     ..+..-.+        -.-+|++.++|.
T Consensus        19 ~GGlSgl~~~~~~~~~~a-vSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~   97 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYA-VSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS   97 (326)
T ss_pred             cCcEeeEEEeCCCCEEEE-EECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence            345788888863555555 455666      65555543  1  001     11222222        234788888888


Q ss_pred             EEEEEcCC------CcEEEEeCCCcccccceeecccC---------CCCCCCCCCceEEEcCCCcEEEEE------eCC-
Q 001295          908 VLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPT---------GRTPTAQSDTRVQFHQDQIHFLVV------HET-  965 (1106)
Q Consensus       908 ~l~s~s~D------g~i~vwd~~~~~~~~~~~~~~~~---------~~~~~~~~i~~~~~s~dg~~l~~~------~d~-  965 (1106)
                      ++++.=.+      ..|+.++.. ++.....  .++.         .....+....+++++|||+.|.++      .|+ 
T Consensus        98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~--~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~  174 (326)
T PF13449_consen   98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRF--PVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGP  174 (326)
T ss_pred             EEEEeCCccCCCCCCEEEEECCC-CcccceE--ccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCc
Confidence            88887777      778777766 4432211  1111         112234677899999999955442      222 


Q ss_pred             -e-------EE--EEecCC-ceEeeeccc--CC-----CCCCeeEEEECCCCCEEEEEE-----cCCeEEEEEcC
Q 001295          966 -Q-------LA--IFETTK-LECVKQWVP--RE-----SSAPITHATFSCDSQLVYACF-----LDATVCVFSAA 1017 (1106)
Q Consensus       966 -~-------v~--i~d~~~-~~~~~~~~~--~~-----h~~~v~~l~~s~d~~~l~t~s-----~Dg~i~vwd~~ 1017 (1106)
                       .       ++  .||..+ ++....+..  ..     ....|+.+.+-+++++|+.-=     ....++|+.+.
T Consensus       175 ~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~  249 (326)
T PF13449_consen  175 RANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD  249 (326)
T ss_pred             ccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence             1       44  455554 323333322  11     356889999999999877431     23455555443

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=91.17  E-value=48  Score=41.21  Aligned_cols=174  Identities=11%  Similarity=0.143  Sum_probs=104.9

Q ss_pred             CCCCeeEEEEe---c----CCCEEEEEeCCeEEEEEcCCC---------------ceeeeec---CCCCCeeEEEEecCC
Q 001295          809 PEEAVPCFALS---K----NDSYVMSASGGKISLFNMMTF---------------KTMATFM---PPPPAATFLAFHPQD  863 (1106)
Q Consensus       809 ~~~~v~~l~~s---~----~~~~l~~~sdg~i~vwd~~~~---------------~~~~~~~---~~~~~v~~l~~s~~d  863 (1106)
                      ...+|..|+|.   .    ..++|++-....+.|+...-.               ..+..+.   ....+...++|+|.+
T Consensus        78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~  157 (765)
T PF10214_consen   78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD  157 (765)
T ss_pred             CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence            57788888888   2    224777777777888772211               1112222   123356678888877


Q ss_pred             CceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCC
Q 001295          864 NNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPT  943 (1106)
Q Consensus       864 ~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  943 (1106)
                      .+.||+.+..|...||++.....     .+.. .          +-++....|.| +.|....                 
T Consensus       158 ~~q~AiVD~~G~Wsvw~i~~~~~-----~~~~-~----------~~~~~~~~gsi-~~d~~e~-----------------  203 (765)
T PF10214_consen  158 QRQFAIVDEKGNWSVWDIKGRPK-----RKSS-N----------LRLSRNISGSI-IFDPEEL-----------------  203 (765)
T ss_pred             cceEEEEeccCcEEEEEeccccc-----cCCc-c----------eeeccCCCccc-cCCCccc-----------------
Confidence            77888888888888888721110     0011 1          11112222333 2232220                 


Q ss_pred             CCCCceEEEcCCCcEEEEEeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCC--CCEEEEEEcCCeEEEEEcCCc
Q 001295          944 AQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCD--SQLVYACFLDATVCVFSAANL 1019 (1106)
Q Consensus       944 ~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d--~~~l~t~s~Dg~i~vwd~~~~ 1019 (1106)
                       ..-..+.|.++-..|+++....+.++|+++......+........|..+.-+++  +..++..  ...|...++.+.
T Consensus       204 -s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~~  278 (765)
T PF10214_consen  204 -SNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKSS  278 (765)
T ss_pred             -CcceeeEecCCCCEEEEEcCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccCC
Confidence             133578899998999999999999999998766442332344678999999887  3333332  367888888763

These proteins are found in fungi.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=90.82  E-value=0.032  Score=59.97  Aligned_cols=146  Identities=18%  Similarity=0.190  Sum_probs=98.7

Q ss_pred             EEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEE
Q 001295          747 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVM  826 (1106)
Q Consensus       747 ~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~  826 (1106)
                      ....+-+.+..++.++.+..+..||-.....                      ..     .........++|+.++..++
T Consensus        38 i~~~w~~e~~nlavaca~tiv~~YD~agq~~----------------------le-----~n~tg~aldm~wDkegdvla   90 (615)
T KOG2247|consen   38 IIHRWRPEGHNLAVACANTIVIYYDKAGQVI----------------------LE-----LNPTGKALDMAWDKEGDVLA   90 (615)
T ss_pred             ceeeEecCCCceehhhhhhHHHhhhhhccee----------------------cc-----cCCchhHhhhhhccccchhh
Confidence            3455666666688888888887776432111                      11     11344455677777777666


Q ss_pred             EEe--CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEec
Q 001295          827 SAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH  904 (1106)
Q Consensus       827 ~~s--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~  904 (1106)
                      ...  .+.+.+||+.+......-.+....-.-+.|++ +...++.|...|.+.|++..+.+.+...-.|..+++++++.+
T Consensus        91 vlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l  169 (615)
T KOG2247|consen   91 VLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL  169 (615)
T ss_pred             hhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEecc
Confidence            554  68999999986543322222222223378999 888999999999999999888776666555999999999998


Q ss_pred             CCCEEEEEcCCCcEEEE
Q 001295          905 ALNVLVSSGADSQLCVW  921 (1106)
Q Consensus       905 d~~~l~s~s~Dg~i~vw  921 (1106)
                      .+ +.+.++.|..+.+-
T Consensus       170 Ed-~vil~dcd~~L~v~  185 (615)
T KOG2247|consen  170 ED-YVILCDCDNTLSVT  185 (615)
T ss_pred             cc-eeeecCcHHHHHHh
Confidence            75 56667777655443

>PHA02790 Kelch-like protein; Provisional

Probab=90.52  E-value=15  Score=42.61  Aligned_cols=185  Identities=7%  Similarity=-0.044  Sum_probs=91.4

Q ss_pred             CCceEEEeeCCC-----cEEEEEeecceEE--EEecCcccCeeEEEEecCCCEEEEEcCCC--cEEEEeCCCccccccee
Q 001295          863 DNNIIAIGMDDS-----SIQIYNVRVDEVK--SKLKGHSKRITGLAFSHALNVLVSSGADS--QLCVWSSDGWEKQKNRF  933 (1106)
Q Consensus       863 d~~~la~g~~dg-----~v~iwd~~~~~~~--~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg--~i~vwd~~~~~~~~~~~  933 (1106)
                      ++.++++|+.++     .+..||..+++-.  ..+....... +++ .-++...+.||.++  ++..||..+++   +..
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~~~~iYviGG~~~~~sve~ydp~~n~---W~~  345 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PANNKLYVVGGLPNPTSVERWFHGDAA---WVN  345 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EECCEEEEECCcCCCCceEEEECCCCe---EEE
Confidence            567777787653     4667887765422  2222111111 222 34677778887643  57778765432   111


Q ss_pred             ecccCCCCCCCCCCceEEEcCCCcEEEEE-eC---CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCC
Q 001295          934 LQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE---TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA 1009 (1106)
Q Consensus       934 ~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d---~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg 1009 (1106)
                      +.....  +   .-...+..-+|+..+.| .+   ..+..||..+.+-...-......... ++ ..-+|+..+.|   |
T Consensus       346 ~~~l~~--~---r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~-~~~~~~IYv~G---G  415 (480)
T PHA02790        346 MPSLLK--P---RCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CA-LVFGRRLFLVG---R  415 (480)
T ss_pred             CCCCCC--C---CcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eE-EEECCEEEEEC---C
Confidence            111110  0   11122233456666663 32   35778888766543321111111111 22 23356666665   4


Q ss_pred             eEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCC-----CcEEEEeecCCC
Q 001295         1010 TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-----GGVHVFEPLESE 1073 (1106)
Q Consensus      1010 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~D-----g~v~vW~~~~~~ 1073 (1106)
                      .+.+||..+.+-...-.    ++..+...     .++..  ++++.+.||.+     .++..+|+.+.+
T Consensus       416 ~~e~ydp~~~~W~~~~~----m~~~r~~~-----~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        416 NAEFYCESSNTWTLIDD----PIYPRDNP-----ELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             ceEEecCCCCcEeEcCC----CCCCcccc-----EEEEE--CCEEEEECCcCCCcccceEEEEECCCCe
Confidence            57788887765442211    22211111     23333  57888888865     357788887755

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=90.42  E-value=1.1  Score=30.97  Aligned_cols=32  Identities=25%  Similarity=0.304  Sum_probs=26.3

Q ss_pred             cCeEEEEEccC-C--CEEEEEeCCCeEEEEEccCC
Q 001295          413 VSVNRVIWSPD-G--SLFGVAYSRHIVQIYSYHGG  444 (1106)
Q Consensus       413 ~~V~~l~~spd-g--~~las~~~d~~v~iwd~~~~  444 (1106)
                      +.|.++.|||+ +  .+|+.+-..+.|.|+|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            46899999984 4  58888877899999999853

It contains a characteristic DLL sequence motif.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=90.24  E-value=0.78  Score=31.74  Aligned_cols=32  Identities=19%  Similarity=0.266  Sum_probs=26.4

Q ss_pred             CCcEEEEEecCCC--eEEEEEeccCcEEEEecCC
Q 001295          351 SSPMSMDFHPVQQ--TLLLVGTNVGDIGLWEVGS  382 (1106)
Q Consensus       351 ~~v~~~~~sp~g~--~llatg~~dg~i~iwd~~~  382 (1106)
                      +.|.+++|||...  .||+....-|.|.|+|+.+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            3689999997544  4788888889999999985

It contains a characteristic DLL sequence motif.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=90.14  E-value=6.6  Score=47.41  Aligned_cols=84  Identities=11%  Similarity=0.175  Sum_probs=54.6

Q ss_pred             CCCeeEEEECCCCCEEEEEEcCCeEEEEEcC----------Cc--eeEEe-eCCCcccCCCCCCCCccceEEEEeCC--C
Q 001295          987 SAPITHATFSCDSQLVYACFLDATVCVFSAA----------NL--KLRCR-INPSAYLPAGVSSSNVHPLVIAAHPQ--E 1051 (1106)
Q Consensus       987 ~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~----------~~--~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~--d 1051 (1106)
                      .-.|..|.++|+|++||..+..|. .|-.+.          .|  ...|+ +.....+...  +.......+.|+|.  +
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~--~~~~~i~qv~WhP~s~~  160 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTS--NSSLEIKQVRWHPWSES  160 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccC--CCCceEEEEEEcCCCCC
Confidence            346889999999999998887654 443432          11  22333 2222222222  22244458999985  2


Q ss_pred             CCEEEEEeCCCcEEEEeecCCC
Q 001295         1052 PNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus      1052 ~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
                      +..|+.-.+|++++++|+...+
T Consensus       161 ~~~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  161 DSHLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             CCeEEEEecCCEEEEEecCCCC
Confidence            5788888999999999998766

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=90.05  E-value=36  Score=38.04  Aligned_cols=200  Identities=10%  Similarity=-0.059  Sum_probs=103.6

Q ss_pred             EecCCCEEEEEeCCeEEEEEcCCCceeeeecCCC--CCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcc-
Q 001295          818 LSKNDSYVMSASGGKISLFNMMTFKTMATFMPPP--PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS-  894 (1106)
Q Consensus       818 ~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~--~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~-  894 (1106)
                      ..-+++.++...+|.|.-+|..++..+.......  ..+..-.+.. +|+ |..++.+|.++.+|..+|+.+-...... 
T Consensus        65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~  142 (370)
T COG1520          65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGS  142 (370)
T ss_pred             EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCCC
Confidence            3446666666568888888888877654333221  2233333333 565 6668889989999988898887766555 


Q ss_pred             cCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEe--CCeEEEEec
Q 001295          895 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH--ETQLAIFET  972 (1106)
Q Consensus       895 ~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~--d~~v~i~d~  972 (1106)
                      -.+..-..-.++ .+..++.|+.+.-.+-.+++..-......  . ..  ..+..-....++..++...  ++.+.-.|.
T Consensus       143 ~~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~--~-~~--~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~  216 (370)
T COG1520         143 PYYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPA--P-LS--LSIYGSPAIASGTVYVGSDGYDGILYALNA  216 (370)
T ss_pred             eEEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCC--c-cc--cccccCceeecceEEEecCCCcceEEEEEc
Confidence            112222222233 23333355666666666554322111110  0 00  0111111134444444443  556777788


Q ss_pred             CCceEeeeccc---CCCCCCeeEEEECC-----CCCEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295          973 TKLECVKQWVP---RESSAPITHATFSC-----DSQLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus       973 ~~~~~~~~~~~---~~h~~~v~~l~~s~-----d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
                      .+|...-....   .+.. .+.......     .+.-+..++.++.+...|..+|+.+-+..
T Consensus       217 ~~G~~~w~~~~~~~~~~~-~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~  277 (370)
T COG1520         217 EDGTLKWSQKVSQTIGRT-AISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFP  277 (370)
T ss_pred             cCCcEeeeeeeecccCcc-cccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEe
Confidence            77776555211   0111 110011111     11223566778888889999999887776

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.80  E-value=12  Score=46.68  Aligned_cols=146  Identities=15%  Similarity=0.215  Sum_probs=92.5

Q ss_pred             eCCCcEEEEEeecceEEEEecCcccCeeEEEEe--------cCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCC--
Q 001295          871 MDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS--------HALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR--  940 (1106)
Q Consensus       871 ~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s--------~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~--  940 (1106)
                      +-|..+.+|+..++.....+.+-+..|..|..-        |.=++|...+.--.|.++-+.-.+....  ......+  
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~--~~~f~~~~~  173 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGE--LSIFNTSFK  173 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCc--cccccccee
Confidence            357889999999988888888888888877653        2323443333344466665443221111  0111110  


Q ss_pred             -CCCCCCCceEEEcCCCcEEEEEeCCeEE--EEecCCc----eEeee--------------ccc-CCCCCCeeEEEECCC
Q 001295          941 -TPTAQSDTRVQFHQDQIHFLVVHETQLA--IFETTKL----ECVKQ--------------WVP-RESSAPITHATFSCD  998 (1106)
Q Consensus       941 -~~~~~~i~~~~~s~dg~~l~~~~d~~v~--i~d~~~~----~~~~~--------------~~~-~~h~~~v~~l~~s~d  998 (1106)
                       ......|.++....+|+.+.+|.||.|+  +|....+    +|-+.              +.. ..+.++|..|++...
T Consensus       174 i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S  253 (1311)
T KOG1900|consen  174 ISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS  253 (1311)
T ss_pred             eecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence             0112467889999999999999888544  2222221    11110              111 256789999999988


Q ss_pred             CCEEEEEEcCCeEEEEEcCC
Q 001295          999 SQLVYACFLDATVCVFSAAN 1018 (1106)
Q Consensus       999 ~~~l~t~s~Dg~i~vwd~~~ 1018 (1106)
                      ...|.+-++-|+|.+||+..
T Consensus       254 R~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  254 RNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             cceeeeeccCceEEEEEccC
Confidence            88899999999999999976

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=89.76  E-value=1.2  Score=30.40  Aligned_cols=33  Identities=12%  Similarity=0.220  Sum_probs=24.2

Q ss_pred             eccCCCCcEEEEEecCCCeEEEEEecc--CcEEEE
Q 001295          346 TLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLW  378 (1106)
Q Consensus       346 ~~~h~~~v~~~~~sp~g~~llatg~~d--g~i~iw  378 (1106)
                      .......-.+.+|||||++|+.+...+  |.-.||
T Consensus         4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            344556778999999999988888777  776666

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=89.43  E-value=41  Score=37.69  Aligned_cols=152  Identities=10%  Similarity=0.059  Sum_probs=84.8

Q ss_pred             eeEEEEecCCCceEEEeeCCCcEEEEEeecceE--EEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccc
Q 001295          854 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV--KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN  931 (1106)
Q Consensus       854 v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~--~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~  931 (1106)
                      ...+..++ ++.++++|.....++-||-  |..  ...-......++++.|.+++.+++.+ .+|.+ +|..+.++....
T Consensus       241 f~~v~~~~-dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~  315 (398)
T PLN00033        241 FSTVNRSP-DGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEED  315 (398)
T ss_pred             eeeEEEcC-CCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCcccc
Confidence            34456667 7777777654333333442  221  11112234568999999998877755 55654 344444321100


Q ss_pred             -eeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCceEeeecc-cCCCCCCeeEEEECCCCCEEEEEEcCC
Q 001295          932 -RFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV-PRESSAPITHATFSCDSQLVYACFLDA 1009 (1106)
Q Consensus       932 -~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~~~~~~-~~~h~~~v~~l~~s~d~~~l~t~s~Dg 1009 (1106)
                       ........  .....+..+.|.+++..++++..|.+..-. ..++.-.... ...-....+.+.|.++++.+++| .+|
T Consensus       316 ~~f~~~~~~--~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G  391 (398)
T PLN00033        316 FDFEEADIK--SRGFGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDG  391 (398)
T ss_pred             cceeecccC--CCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCc
Confidence             01111100  011257889999999999999888776654 3333322211 11224578899998887777766 688


Q ss_pred             eEEEE
Q 001295         1010 TVCVF 1014 (1106)
Q Consensus      1010 ~i~vw 1014 (1106)
                      .|.-|
T Consensus       392 ~il~~  396 (398)
T PLN00033        392 VLLRY  396 (398)
T ss_pred             EEEEe
Confidence            77655

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.17  E-value=6.2  Score=49.71  Aligned_cols=69  Identities=12%  Similarity=0.140  Sum_probs=44.8

Q ss_pred             CCceEEEcCCCcEEEEEeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCcee
Q 001295          946 SDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL 1021 (1106)
Q Consensus       946 ~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~ 1021 (1106)
                      .+.+..+......+.....+.+.+|+.........+...++..       +.++..++++-.||.+..||...+..
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~v~~h~Dgs~~fWd~s~g~~  268 (993)
T KOG1983|consen  200 ESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQLE-------SRDGSHFVSYHTDGSYAFWDVSSGKL  268 (993)
T ss_pred             ccceeeeecCCCcceeeeeeeeeehhcccccchhhcccccccC-------ccCCceEEEEEecCCEEeeecCCCce
Confidence            3444444445555555555666666655444444443322222       88999999999999999999999866

>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others

Probab=89.04  E-value=53  Score=42.58  Aligned_cols=149  Identities=13%  Similarity=0.172  Sum_probs=87.7

Q ss_pred             CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEE
Q 001295          349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  428 (1106)
Q Consensus       349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  428 (1106)
                      |...++.|.-+++|++ +=  -.|+.++.||..+.         .|...          -..-...++.+.-.-||+..|
T Consensus       361 H~A~LTgv~~~~~ge~-lR--lHd~~LY~~d~~~~---------~Wk~~----------~~~~d~~~S~Ls~qgdG~lYA  418 (1774)
T PF11725_consen  361 HIAHLTGVHTDPDGEQ-LR--LHDDRLYQFDPNTA---------RWKPP----------PDKSDTPFSSLSRQGDGKLYA  418 (1774)
T ss_pred             HHHHhhccccCCCCCe-EE--eecCceeeeccccc---------eecCC----------CCcccchhhhhcccCCCceEe
Confidence            5667778888888875 32  35788888887654         23210          012233555566556676665


Q ss_pred             EEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCC------ceeE--EEecc
Q 001295          429 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG------AKQY--IFEGH  500 (1106)
Q Consensus       429 s~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~------~~~~--~~~~h  500 (1106)
                         .++. .|-|+..+....      ..-..|.+...+++|.- .+.++-....+.+|++...      +...  .+.+-
T Consensus       419 ---k~~~-~l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG  487 (1774)
T PF11725_consen  419 ---KDDD-TLVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADG  487 (1774)
T ss_pred             ---cCCC-ceeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeeccCC
Confidence               2221 134555443211      12345777888899984 4777777778899998753      1112  23333


Q ss_pred             CCCeEEEeccccCCceEEEEEecCCeEEEEeCCC
Q 001295          501 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN  534 (1106)
Q Consensus       501 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  534 (1106)
                      .....+|.++  .  ..|+.+..+|.++.=++..
T Consensus       488 ~a~A~~VgLs--~--drLFvADseGkLYsa~l~~  517 (1774)
T PF11725_consen  488 KAQAQSVGLS--N--DRLFVADSEGKLYSADLPA  517 (1774)
T ss_pred             chhhhheeec--C--CeEEEEeCCCCEEeccccc
Confidence            3345555543  3  2688889999888877764

It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=88.52  E-value=43  Score=36.81  Aligned_cols=148  Identities=11%  Similarity=0.154  Sum_probs=84.5

Q ss_pred             CeEEEEEcC--CCceeeeecC-------CCCCeeEEEE--ecCCCc-eEEEeeCCCcEEEEEeec-------ceEEEEec
Q 001295          831 GKISLFNMM--TFKTMATFMP-------PPPAATFLAF--HPQDNN-IIAIGMDDSSIQIYNVRV-------DEVKSKLK  891 (1106)
Q Consensus       831 g~i~vwd~~--~~~~~~~~~~-------~~~~v~~l~~--s~~d~~-~la~g~~dg~v~iwd~~~-------~~~~~~l~  891 (1106)
                      .+|++|.+.  ++. +..+..       ....+..+|+  ++.++. ++++...+|.+..|.+..       ++++++|.
T Consensus       127 n~l~~f~id~~~g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~  205 (381)
T PF02333_consen  127 NSLRLFRIDPDTGE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK  205 (381)
T ss_dssp             -EEEEEEEETTTTE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE
T ss_pred             CeEEEEEecCCCCc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec
Confidence            469999876  332 332221       1224556665  443444 666678899999888752       24677776


Q ss_pred             CcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEc--CCC-cEEEEE--eCCe
Q 001295          892 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH--QDQ-IHFLVV--HETQ  966 (1106)
Q Consensus       892 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s--~dg-~~l~~~--~d~~  966 (1106)
                      .- ..+-.++......+|..+-+|.-|+-|+.+.........+....+. .....+..+++-  .++ .||+++  .+++
T Consensus       206 ~~-sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~-~l~aDvEGlaly~~~~g~gYLivSsQG~~s  283 (381)
T PF02333_consen  206 VG-SQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGD-GLVADVEGLALYYGSDGKGYLIVSSQGDNS  283 (381)
T ss_dssp             -S-S-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSS-SB-S-EEEEEEEE-CCC-EEEEEEEGGGTE
T ss_pred             CC-CcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeeccccc-ccccCccceEEEecCCCCeEEEEEcCCCCe
Confidence            53 3688888988888999999998787777765433333333332221 112355666663  343 466664  6778


Q ss_pred             EEEEecCCc-eEeeec
Q 001295          967 LAIFETTKL-ECVKQW  981 (1106)
Q Consensus       967 v~i~d~~~~-~~~~~~  981 (1106)
                      ..||+.+.. ..+..|
T Consensus       284 f~Vy~r~~~~~~~g~f  299 (381)
T PF02333_consen  284 FAVYDREGPNAYVGSF  299 (381)
T ss_dssp             EEEEESSTT--EEEEE
T ss_pred             EEEEecCCCCcccceE
Confidence            999998753 334443

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=88.31  E-value=36  Score=35.61  Aligned_cols=207  Identities=10%  Similarity=0.109  Sum_probs=121.4

Q ss_pred             CeeEEEEecCCCEEEEEe-CCeEEEEEcC------CC-ceeeeecC-----CCCCeeEEEEecCCCce------------
Q 001295          812 AVPCFALSKNDSYVMSAS-GGKISLFNMM------TF-KTMATFMP-----PPPAATFLAFHPQDNNI------------  866 (1106)
Q Consensus       812 ~v~~l~~s~~~~~l~~~s-dg~i~vwd~~------~~-~~~~~~~~-----~~~~v~~l~~s~~d~~~------------  866 (1106)
                      ..+.|+++|.+.+-++.. -+...+||..      .. .++-++..     .....+.+.|+. ...+            
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a~  102 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPSR  102 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCccccee
Confidence            357899999987776665 5889999986      11 22333332     234577788875 2222            


Q ss_pred             EEEeeCCCcEEEEEeecceE-----EEEecC-cccCe-eEEEEecC--CCEEEEE-cCCCcEEEEeCCCccccc-ceee-
Q 001295          867 IAIGMDDSSIQIYNVRVDEV-----KSKLKG-HSKRI-TGLAFSHA--LNVLVSS-GADSQLCVWSSDGWEKQK-NRFL-  934 (1106)
Q Consensus       867 la~g~~dg~v~iwd~~~~~~-----~~~l~~-h~~~V-~~l~~s~d--~~~l~s~-s~Dg~i~vwd~~~~~~~~-~~~~-  934 (1106)
                      ++.+++||+|.=|...-+..     ...+.. ..+.| ..+++...  +.+|..+ -..++|.|+|-.-.+... .... 
T Consensus       103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~D  182 (336)
T TIGR03118       103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFID  182 (336)
T ss_pred             EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccC
Confidence            46678999999998532211     122221 12334 34666533  4555444 467889999754321100 0000 


Q ss_pred             -cccCCCCCCCCCCceEEEcCCCcEEEE-E-------------eCCeEEEEecCCceEeeecccCCCCCCeeEEEECC--
Q 001295          935 -QIPTGRTPTAQSDTRVQFHQDQIHFLV-V-------------HETQLAIFETTKLECVKQWVPRESSAPITHATFSC--  997 (1106)
Q Consensus       935 -~~~~~~~~~~~~i~~~~~s~dg~~l~~-~-------------~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~--  997 (1106)
                       .+..+.     ....+.- -.++++++ +             .-|.|-+||.. +..++.+...+.-...+.|+..|  
T Consensus       183 P~iPagy-----APFnIqn-ig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~  255 (336)
T TIGR03118       183 PALPAGY-----APFNVQN-LGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPES  255 (336)
T ss_pred             CCCCCCC-----CCcceEE-ECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhh
Confidence             001111     1111111 12333333 2             22578999986 67777776556666777888865  


Q ss_pred             ----CCCEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295          998 ----DSQLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus       998 ----d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
                          .|.+|+---.||+|-.||..+|+.+..+.
T Consensus       256 FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~  288 (336)
T TIGR03118       256 FGSLSGALLVGNFGDGTINAYDPQSGAQLGQLL  288 (336)
T ss_pred             hCCCCCCeEEeecCCceeEEecCCCCceeeeec
Confidence                66778877789999999999999888877

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=88.29  E-value=34  Score=35.34  Aligned_cols=187  Identities=13%  Similarity=0.117  Sum_probs=0.0

Q ss_pred             CCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeec---ceEEEEecCcccCe
Q 001295          822 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---DEVKSKLKGHSKRI  897 (1106)
Q Consensus       822 ~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~---~~~~~~l~~h~~~V  897 (1106)
                      +++...+. +..++|+|+.+......+..-.-.-.+-.+.- .|++..++..|.-+-++|+.+   ..+..........-
T Consensus        96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v-sGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~  174 (370)
T COG5276          96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV-SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDT  174 (370)
T ss_pred             ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe-cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCc


Q ss_pred             eEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCceE
Q 001295          898 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLEC  977 (1106)
Q Consensus       898 ~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~  977 (1106)
                      ..++.|  |++-..+..|+-+.+-|+..      ..-..+.++......+..+..+++-.+++...++ +.+-|..+.+.
T Consensus       175 ~~v~IS--Gn~AYvA~~d~GL~ivDVSn------p~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~eg-vlivd~s~~ss  245 (370)
T COG5276         175 HDVAIS--GNYAYVAWRDGGLTIVDVSN------PHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEG-VLIVDVSGPSS  245 (370)
T ss_pred             eeEEEe--cCeEEEEEeCCCeEEEEccC------CCCCeEEEEEecCCceEEEEecCCeeEEEEcccc-eEEEecCCCCC


Q ss_pred             eeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCC
Q 001295          978 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1018 (1106)
Q Consensus       978 ~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~ 1018 (1106)
                      ...+-......++.--.|.=.+++...+..+.-+.+-|+.+
T Consensus       246 p~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisn  286 (370)
T COG5276         246 PTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISN  286 (370)
T ss_pred             ceEeeccccCCcccccceecccceeeeeccccCceeEeccC

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=88.26  E-value=2  Score=46.22  Aligned_cols=159  Identities=13%  Similarity=0.084  Sum_probs=98.9

Q ss_pred             CCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCCceee-ee-cCCCC----Cee-EEEEecCCCceEEEeeCCCcEEEE-E
Q 001295          809 PEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMA-TF-MPPPP----AAT-FLAFHPQDNNIIAIGMDDSSIQIY-N  880 (1106)
Q Consensus       809 ~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~-~~-~~~~~----~v~-~l~~s~~d~~~la~g~~dg~v~iw-d  880 (1106)
                      ....+..+-..|||+.+..-+..++.++++.+..... ++ ....+    .|+ .+..-. ++.-|.+++.||-|.-| |
T Consensus       219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFd  297 (733)
T COG4590         219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFD  297 (733)
T ss_pred             CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeee
Confidence            4566788899999999998888899999887643321 11 11111    222 222223 67778889999999877 4


Q ss_pred             eecc-e----EEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCC
Q 001295          881 VRVD-E----VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD  955 (1106)
Q Consensus       881 ~~~~-~----~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~d  955 (1106)
                      +..+ .    .++.++-...+|..+.--.+.+-+++-+..|++.++.....+.    .+....     ...+..+++||.
T Consensus       298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~----lL~~~~-----~~~~~~~~~Sp~  368 (733)
T COG4590         298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKL----LLFERA-----YQAPQLVAMSPN  368 (733)
T ss_pred             eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcc----eehhhh-----hcCcceeeeCcc
Confidence            4432 1    1222222223333333333456678888899988876544221    111111     125678999999


Q ss_pred             CcEEEEEeCCeEEEEecCCceE
Q 001295          956 QIHFLVVHETQLAIFETTKLEC  977 (1106)
Q Consensus       956 g~~l~~~~d~~v~i~d~~~~~~  977 (1106)
                      +.++++-..++++++.+++...
T Consensus       369 ~~~Ll~e~~gki~~~~l~Nr~P  390 (733)
T COG4590         369 QAYLLSEDQGKIRLAQLENRNP  390 (733)
T ss_pred             cchheeecCCceEEEEecCCCC
Confidence            9999998889999998876544

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=88.02  E-value=18  Score=39.36  Aligned_cols=162  Identities=12%  Similarity=0.126  Sum_probs=90.3

Q ss_pred             cccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCee-EEEEec
Q 001295          742 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP-CFALSK  820 (1106)
Q Consensus       742 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~-~l~~s~  820 (1106)
                      ....+..+-..|||+.+.+-+. .++.++++........  .       +-+-..|.          ....|+ .+..-.
T Consensus       219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~r--k-------l~~dspg~----------~~~~Vte~l~lL~  278 (733)
T COG4590         219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIR--K-------LVDDSPGD----------SRHQVTEQLYLLS  278 (733)
T ss_pred             CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchh--h-------hhhcCCCc----------hHHHHHHHHHHHh
Confidence            3456778889999998877666 6778887764332111  1       11110110          001111 111122


Q ss_pred             CCCEEEEEe-CCeEEEE-EcCCC-----ceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCc
Q 001295          821 NDSYVMSAS-GGKISLF-NMMTF-----KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH  893 (1106)
Q Consensus       821 ~~~~l~~~s-dg~i~vw-d~~~~-----~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h  893 (1106)
                      .|..+.+++ ||.|.-| |+...     ..++.++-...++..+.-.. +.+-+++-+.+|++.++.....+.+-. ..-
T Consensus       279 Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~lL~-~~~  356 (733)
T COG4590         279 GGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKLLLF-ERA  356 (733)
T ss_pred             CceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccCcceeh-hhh
Confidence            444455555 7877766 44321     12233333334444444333 456677788899998887554443322 222


Q ss_pred             ccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCc
Q 001295          894 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGW  926 (1106)
Q Consensus       894 ~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~  926 (1106)
                      -..+.-+++||.+.+|++-.. |.++++.+++.
T Consensus       357 ~~~~~~~~~Sp~~~~Ll~e~~-gki~~~~l~Nr  388 (733)
T COG4590         357 YQAPQLVAMSPNQAYLLSEDQ-GKIRLAQLENR  388 (733)
T ss_pred             hcCcceeeeCcccchheeecC-CceEEEEecCC
Confidence            235667899999999987654 56999988773

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=87.99  E-value=46  Score=36.56  Aligned_cols=198  Identities=16%  Similarity=0.274  Sum_probs=102.5

Q ss_pred             cCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEE----cCCCCceEEEEec-CC---CcEEEEeCC--CC
Q 001295          422 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF----SHPNKQLCVITCG-DD---KTIKVWDAT--NG  491 (1106)
Q Consensus       422 pdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~----s~d~~~~~l~s~~-~d---~~i~iwd~~--~~  491 (1106)
                      |...+++....++-+.+||+.... ++.   +.  .+.++.+..    .-.|+..-|+.++ .+   .+|++|.+.  ++
T Consensus        66 p~kSlIigTdK~~GL~VYdL~Gk~-lq~---~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g  139 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDLDGKE-LQS---LP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTG  139 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEETTS-E-EEE---E---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTT
T ss_pred             cccceEEEEeCCCCEEEEcCCCcE-EEe---ec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCC
Confidence            355677777788889999998743 332   22  234444433    1234432244443 22   479999765  34


Q ss_pred             ceeEEEec-------cCCCeEEEeccccC-Cc-eEEEEEecCCeEEEEeCCCC-CceeEeeCCCCeeEEEEEecCCCeEE
Q 001295          492 AKQYIFEG-------HEAPVYSVCPHHKE-NI-QFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTY  561 (1106)
Q Consensus       492 ~~~~~~~~-------h~~~v~~~~~~~~~-~~-~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~  561 (1106)
                      . +..+..       ....+..+|+..++ ++ -+++....+|.+..|.+... ......    ..|..+..        
T Consensus       140 ~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~----~lVR~f~~--------  206 (381)
T PF02333_consen  140 E-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSA----TLVREFKV--------  206 (381)
T ss_dssp             E-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEE----EEEEEEE---------
T ss_pred             c-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEee----EEEEEecC--------
Confidence            3 333322       12346778865432 33 47777888999988877521 111100    01222211        


Q ss_pred             EeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCC-----cceeEEEccCCCCCCcCeEEEcc--CC--CEEEEEeCCC
Q 001295          562 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-----VQLLTSIDADGGLPASPRIRFNK--DG--CLLAVSTNDN  632 (1106)
Q Consensus       562 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~-----~~~~~~~~~~~~~~~v~~v~~s~--~~--~~l~~~~~dg  632 (1106)
                          ...+-.+..+....+|+.+-++.-|+-|+.+-     ++.+....+..-...|-.+++-.  ++  .+|++.-.++
T Consensus       207 ----~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~  282 (381)
T PF02333_consen  207 ----GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDN  282 (381)
T ss_dssp             ----SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGT
T ss_pred             ----CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCC
Confidence                11344455566666788888888888888752     22232333322234566677643  33  3444444577


Q ss_pred             cEEEEEccCC
Q 001295          633 GIKILATSDG  642 (1106)
Q Consensus       633 ~i~iwd~~~~  642 (1106)
                      +..||+....
T Consensus       283 sf~Vy~r~~~  292 (381)
T PF02333_consen  283 SFAVYDREGP  292 (381)
T ss_dssp             EEEEEESSTT
T ss_pred             eEEEEecCCC
Confidence            8999998754

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=87.51  E-value=57  Score=37.11  Aligned_cols=71  Identities=11%  Similarity=0.211  Sum_probs=47.2

Q ss_pred             CcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCC
Q 001295          412 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN  490 (1106)
Q Consensus       412 ~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~  490 (1106)
                      ..+|.++.+..+|.+. +|+.|| +..||..+++.++..  ......+|..+.-+-.|+   +..|+.+| |.+.+.+.
T Consensus       164 d~~V~aLv~D~~g~lW-vgT~dG-L~~fd~~~gkalql~--s~~~dk~I~al~~d~qg~---LWVGTdqG-v~~~e~~G  234 (671)
T COG3292         164 DTPVVALVFDANGRLW-VGTPDG-LSYFDAGRGKALQLA--SPPLDKAINALIADVQGR---LWVGTDQG-VYLQEAEG  234 (671)
T ss_pred             CccceeeeeeccCcEE-EecCCc-ceEEccccceEEEcC--CCcchhhHHHHHHHhcCc---EEEEeccc-eEEEchhh
Confidence            4578889998888654 577788 778888887765421  112235777777777776   56666555 66666444

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=87.32  E-value=26  Score=40.68  Aligned_cols=147  Identities=14%  Similarity=0.123  Sum_probs=74.4

Q ss_pred             CCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEE
Q 001295          872 DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ  951 (1106)
Q Consensus       872 ~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  951 (1106)
                      ..+...++|. .|.++..+.........+...++|.+++..+  ..+..+|+... ....  .....+.   ...=..+.
T Consensus       126 ~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~-v~~~--~~l~~~~---~~~HHD~~  196 (477)
T PF05935_consen  126 SSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGK-VIWE--YDLPGGY---YDFHHDID  196 (477)
T ss_dssp             BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEE--EE--TTE---E-B-S-EE
T ss_pred             CCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCC-EEEe--eecCCcc---cccccccE
Confidence            3445555553 2444444433222222266778888887666  56777777542 2111  1111110   00115678


Q ss_pred             EcCCCcEEEEEe--------------CCeEEEEecCCceEeeecccCCCC-------------------------CCeeE
Q 001295          952 FHQDQIHFLVVH--------------ETQLAIFETTKLECVKQWVPRESS-------------------------APITH  992 (1106)
Q Consensus       952 ~s~dg~~l~~~~--------------d~~v~i~d~~~~~~~~~~~~~~h~-------------------------~~v~~  992 (1106)
                      .-|+|++|+.+.              +..|..+| .+|+.+..|....|-                         --+.+
T Consensus       197 ~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Ns  275 (477)
T PF05935_consen  197 ELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINS  275 (477)
T ss_dssp             E-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEE
T ss_pred             ECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCc
Confidence            889999988754              33567777 888887776654431                         23688


Q ss_pred             EEECC-CCCEEEEEEcCCeEEEEEcCCceeEEeeCCC
Q 001295          993 ATFSC-DSQLVYACFLDATVCVFSAANLKLRCRINPS 1028 (1106)
Q Consensus       993 l~~s~-d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~ 1028 (1106)
                      +.+.+ ++.+|+++=.-..|...|..+++..-.+...
T Consensus       276 i~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~  312 (477)
T PF05935_consen  276 IDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP  312 (477)
T ss_dssp             EEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred             cEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence            99988 5555555544558888999999988877643

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.52  E-value=4.4  Score=43.84  Aligned_cols=124  Identities=10%  Similarity=0.133  Sum_probs=80.9

Q ss_pred             cCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEE
Q 001295          348 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF  427 (1106)
Q Consensus       348 ~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l  427 (1106)
                      ...++|.++.||+|.+ ++|+--.+++|.+.+....+.....+               ...+..+..|....|+.+ .-+
T Consensus        64 ~d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~---------------~~ck~k~~~IlGF~W~~s-~e~  126 (657)
T KOG2377|consen   64 DDKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYT---------------QECKTKNANILGFCWTSS-TEI  126 (657)
T ss_pred             cCCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHH---------------HHhccCcceeEEEEEecC-eeE
Confidence            3557999999999999 69999999999999974332211000               012333456899999876 567


Q ss_pred             EEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCC
Q 001295          428 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG  491 (1106)
Q Consensus       428 as~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~  491 (1106)
                      |..+..| +-+|.+...+  +.+...+.|...|.--.|+++..-.+++|+-..+++.=+-++++
T Consensus       127 A~i~~~G-~e~y~v~pek--rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~  187 (657)
T KOG2377|consen  127 AFITDQG-IEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG  187 (657)
T ss_pred             EEEecCC-eEEEEEchhh--hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence            7666666 7777765432  22223567888999999999988544444434444444444443

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=86.48  E-value=3.6  Score=40.05  Aligned_cols=31  Identities=32%  Similarity=0.555  Sum_probs=25.1

Q ss_pred             cCeEEEEEccCC------CEEEEEeCCCeEEEEEccC
Q 001295          413 VSVNRVIWSPDG------SLFGVAYSRHIVQIYSYHG  443 (1106)
Q Consensus       413 ~~V~~l~~spdg------~~las~~~d~~v~iwd~~~  443 (1106)
                      ..|.+++|||-|      -+||+.+.++.|.||.-..
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            379999999943      3678889999999998764

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=86.21  E-value=34  Score=40.75  Aligned_cols=111  Identities=12%  Similarity=0.234  Sum_probs=72.3

Q ss_pred             CCeeEEEEec--CCCEEEEEe-CCeEEEEEcCC-------C----c---------eeeeecCCCCCeeEEEEe--cCCCc
Q 001295          811 EAVPCFALSK--NDSYVMSAS-GGKISLFNMMT-------F----K---------TMATFMPPPPAATFLAFH--PQDNN  865 (1106)
Q Consensus       811 ~~v~~l~~s~--~~~~l~~~s-dg~i~vwd~~~-------~----~---------~~~~~~~~~~~v~~l~~s--~~d~~  865 (1106)
                      ..|..|.+..  +...|+.+. ||.|.+|.+++       .    .         +...+. -...+..+++.  . ..+
T Consensus       101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~-~~r  178 (717)
T PF08728_consen  101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYK-KSR  178 (717)
T ss_pred             ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecC-cce
Confidence            3455555443  445666666 79999998632       0    0         011111 23467889988  6 788


Q ss_pred             eEEEeeCCCcEEEEEeecc--eEE-EEecCcccCeeEEEEecCC------CEEEEEcCCCcEEEEeC
Q 001295          866 IIAIGMDDSSIQIYNVRVD--EVK-SKLKGHSKRITGLAFSHAL------NVLVSSGADSQLCVWSS  923 (1106)
Q Consensus       866 ~la~g~~dg~v~iwd~~~~--~~~-~~l~~h~~~V~~l~~s~d~------~~l~s~s~Dg~i~vwd~  923 (1106)
                      +||+++....|.||-....  +.. ..-..|...|-+|+|-++.      .+|++++-.|.+.+|++
T Consensus       179 lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  179 LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            9999998888888866542  111 1111266779999997653      27888999999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=86.11  E-value=42  Score=36.69  Aligned_cols=173  Identities=17%  Similarity=0.202  Sum_probs=93.9

Q ss_pred             cccceEEEEEcCCCceEEEeecCce------EEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeE
Q 001295          742 RATKISRLIFTNSGNAILALASNAI------HLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC  815 (1106)
Q Consensus       742 ~~~~i~~~~~s~~~~~l~~~~~dg~------i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~  815 (1106)
                      .-+.+..+.+.+++..+++.+++|.      +..+++..... ..........+.+-+. .|.....      ..-...+
T Consensus        18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~-~G~~~~~------~~~D~Eg   89 (326)
T PF13449_consen   18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQG-GIGGVTILDMIPLRDP-DGQPFPK------NGLDPEG   89 (326)
T ss_pred             ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCC-CccceEeccceeccCC-CCCcCCc------CCCChhH
Confidence            3466788999977667888888777      55555443111 0011111111111121 1221110      1225567


Q ss_pred             EEEecCCCEEEEEe-C------CeEEEEEcCCCceeeeec---------------CCCCCeeEEEEecCCCceEEEeeCC
Q 001295          816 FALSKNDSYVMSAS-G------GKISLFNMMTFKTMATFM---------------PPPPAATFLAFHPQDNNIIAIGMDD  873 (1106)
Q Consensus       816 l~~s~~~~~l~~~s-d------g~i~vwd~~~~~~~~~~~---------------~~~~~v~~l~~s~~d~~~la~g~~d  873 (1106)
                      |++.++|.++++.- +      ..|..++.. ++....+.               ..+...-+++++| +++.|.++.+.
T Consensus        90 i~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~~~E~  167 (326)
T PF13449_consen   90 IAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFAAMES  167 (326)
T ss_pred             eEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEEEECc
Confidence            88878888877775 5      568888866 55544431               1234578999999 78855554432


Q ss_pred             C-------c-------EEEEEe--ec-ceEE----EEecC-----cccCeeEEEEecCCCEEEEE-----cCCCcEEEEe
Q 001295          874 S-------S-------IQIYNV--RV-DEVK----SKLKG-----HSKRITGLAFSHALNVLVSS-----GADSQLCVWS  922 (1106)
Q Consensus       874 g-------~-------v~iwd~--~~-~~~~----~~l~~-----h~~~V~~l~~s~d~~~l~s~-----s~Dg~i~vwd  922 (1106)
                      .       .       ++|+..  .+ ++..    ..+..     ....|..+.+-+++++|+-=     +....++|+.
T Consensus       168 ~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~  247 (326)
T PF13449_consen  168 PLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYR  247 (326)
T ss_pred             cccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEE
Confidence            2       1       555544  33 2222    22222     35678889999998877632     1234555555


Q ss_pred             CC
Q 001295          923 SD  924 (1106)
Q Consensus       923 ~~  924 (1106)
                      +.
T Consensus       248 v~  249 (326)
T PF13449_consen  248 VD  249 (326)
T ss_pred             EE
Confidence            44

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=85.76  E-value=8.3  Score=47.96  Aligned_cols=170  Identities=12%  Similarity=0.193  Sum_probs=99.4

Q ss_pred             CCCCcceeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeE
Q 001295          337 EDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN  416 (1106)
Q Consensus       337 ~~~~~~~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~  416 (1106)
                      ..+|..+..-+.|...=+.+-+-|.=.+.-+  +.|+.+.+|+++++.....                   +.+-+..|.
T Consensus        65 ~~IP~el~eq~~~~~~~~~mGiFpeI~RaWi--TiDn~L~lWny~~~~e~~~-------------------~d~~shtIl  123 (1311)
T KOG1900|consen   65 VNIPDELLEQFSNIECKTDMGIFPEIGRAWI--TIDNNLFLWNYESDNELAE-------------------YDGLSHTIL  123 (1311)
T ss_pred             ccCCHHHHHHhcCcceeeeeccchhhcceEE--EeCCeEEEEEcCCCCcccc-------------------ccchhhhhe
Confidence            5566666666666555555555554332233  5689999999998654432                   233344455


Q ss_pred             EEE--------EccCCCEEEEEeCCCeEEEEEccCCceeeee------eeeccccCCeeEEEEcCCCCceEEEEecCCCc
Q 001295          417 RVI--------WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQH------LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT  482 (1106)
Q Consensus       417 ~l~--------~spdg~~las~~~d~~v~iwd~~~~~~~~~~------~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~  482 (1106)
                      .|.        |-|.=++|+..+.--.|.|+-+.-.+.....      ..+.-....|+|+....+|+  +|++| .|| 
T Consensus       124 ~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF~~G-~dg-  199 (1311)
T KOG1900|consen  124 KVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IFFAG-RDG-  199 (1311)
T ss_pred             eeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc--EEEee-cCC-
Confidence            444        3333445555544556777655432221111      11222345789999888888  55555 455 


Q ss_pred             EEEEeCC----CC---c-e----------------eEEEe-ccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCC
Q 001295          483 IKVWDAT----NG---A-K----------------QYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN  534 (1106)
Q Consensus       483 i~iwd~~----~~---~-~----------------~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  534 (1106)
                       .+|.+.    +|   + +                +-.+. .+..+|..+.+..  ....+.+-+..|+|.+||+..
T Consensus       200 -~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~--SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  200 -NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN--SRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             -CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc--ccceeeeeccCceEEEEEccC
Confidence             455432    21   1 1                11122 5677899998744  447899999999999999976

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=85.49  E-value=57  Score=35.12  Aligned_cols=210  Identities=9%  Similarity=-0.032  Sum_probs=102.5

Q ss_pred             CCCCeeEEEEecCCCEEEEEeCCe--EEEEEcCCCcee---------------eeecCCCCCeeEEEEecCCCceEEEee
Q 001295          809 PEEAVPCFALSKNDSYVMSASGGK--ISLFNMMTFKTM---------------ATFMPPPPAATFLAFHPQDNNIIAIGM  871 (1106)
Q Consensus       809 ~~~~v~~l~~s~~~~~l~~~sdg~--i~vwd~~~~~~~---------------~~~~~~~~~v~~l~~s~~d~~~la~g~  871 (1106)
                      +...|+++...+..+.|++-+|+.  ++++++......               ...-++.......+........++++.
T Consensus        41 ~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A  120 (302)
T smart00036       41 GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVA  120 (302)
T ss_pred             CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEE
Confidence            577899999999999998888766  999998533210               011123333344444431222334444


Q ss_pred             CCCcEEEEEeecc----eEEEEe---cC-cccCeeEEEEecC--CCEEEEEcCCCcEEEEeCCC--cccccceeecccCC
Q 001295          872 DDSSIQIYNVRVD----EVKSKL---KG-HSKRITGLAFSHA--LNVLVSSGADSQLCVWSSDG--WEKQKNRFLQIPTG  939 (1106)
Q Consensus       872 ~dg~v~iwd~~~~----~~~~~l---~~-h~~~V~~l~~s~d--~~~l~s~s~Dg~i~vwd~~~--~~~~~~~~~~~~~~  939 (1106)
                      ...+|.++.....    .....+   .. -..++..+..+++  ...|..|+..+-..++++..  ........-.....
T Consensus       121 ~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~  200 (302)
T smart00036      121 LQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEE  200 (302)
T ss_pred             cCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeecccccccccccccccc
Confidence            5567777644321    111110   00 1123333333333  45666666542344555533  11111000000000


Q ss_pred             CCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCc
Q 001295          940 RTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1019 (1106)
Q Consensus       940 ~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~ 1019 (1106)
                      ..   ....++..-+++.+|+ +.|....+.|....+..+.... .-...+.++++.  ..+|++-. +..|.|+++.++
T Consensus       201 ~~---~~p~~i~~l~~~e~Ll-c~~~~~v~Vn~~G~~~~r~~~l-~w~~~p~~~~~~--~pyll~~~-~~~ievr~l~~~  272 (302)
T smart00036      201 TS---LKPISVVQVPRDEFLL-CYDEFGVFVNLYGKRRSRNPIL-HWEFMPESFAYH--SPYLLAFH-DNGIEIRSIKTG  272 (302)
T ss_pred             cc---cCceEEEEECCCeEEE-EECcEEEEEeCCCCccccceEE-EcCCcccEEEEE--CCEEEEEc-CCcEEEEECCCC
Confidence            00   0223343344554444 4444455555543122111110 113456677776  45766554 556999999999


Q ss_pred             eeEEeeC
Q 001295         1020 KLRCRIN 1026 (1106)
Q Consensus      1020 ~~~~~~~ 1026 (1106)
                      +++..+.
T Consensus       273 ~l~q~i~  279 (302)
T smart00036      273 ELLQELA  279 (302)
T ss_pred             ceEEEEe
Confidence            9988776

Unpublished observations.

>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins

Probab=85.42  E-value=3.9  Score=35.58  Aligned_cols=78  Identities=23%  Similarity=0.321  Sum_probs=54.0

Q ss_pred             cchhHHHHHHHHHHHhHhcHHHHHHHHHHhhCCCcc-HH-HHHHHHhcCCHHHHHHHhcccccccCccccchhhhHHHHH
Q 001295            2 SSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFN-MK-YFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQ   79 (1106)
Q Consensus         2 ~~~~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~~~-~~-~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q   79 (1106)
                      ..+.+|-...|.+|++..|   +.+-+++|.|+++. ++ +|         |+.++.|.... .+.      ---...+.
T Consensus        32 ~~L~~E~~~Fi~~Fi~~rG---nlKe~e~~lgiSYPTvR~rL---------d~ii~~lg~~~-~~~------~~~~~~~~   92 (113)
T PF09862_consen   32 ARLSPEQLEFIKLFIKNRG---NLKEMEKELGISYPTVRNRL---------DKIIEKLGYEE-DEE------EEEEDERK   92 (113)
T ss_pred             hcCCHHHHHHHHHHHHhcC---CHHHHHHHHCCCcHHHHHHH---------HHHHHHhCCCC-Ccc------cccchhHH
Confidence            4677888899999999999   88899999999998 32 22         22233332211 111      11235678


Q ss_pred             HHHHHHhCCC--HHHHHHHHH
Q 001295           80 KYLEALDKHD--RAKAVEILV   98 (1106)
Q Consensus        80 ~~lEll~~~~--~~~A~~~l~   98 (1106)
                      ..|+.|++|+  .++|++.|+
T Consensus        93 ~IL~~L~~GeIs~eeA~~~Lk  113 (113)
T PF09862_consen   93 EILDKLEKGEISVEEALEILK  113 (113)
T ss_pred             HHHHHHHcCCCCHHHHHHHhC
Confidence            8999999998  677888774

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=85.10  E-value=3.5  Score=48.59  Aligned_cols=136  Identities=14%  Similarity=0.149  Sum_probs=76.9

Q ss_pred             cEEEEEecC-CCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEc--cCCCEEEE
Q 001295          353 PMSMDFHPV-QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS--PDGSLFGV  429 (1106)
Q Consensus       353 v~~~~~sp~-g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s--pdg~~las  429 (1106)
                      |+.+....- |..+|+.+..||.|.+|.+++--......-.-.|-..............-...++.+++.  ...++||+
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAV  182 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAV  182 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEE
Confidence            444444332 233788889999999998643110000000000000000000000112234489999998  78889999


Q ss_pred             EeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCC----ceEEEEecCCCcEEEEeC
Q 001295          430 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNK----QLCVITCGDDKTIKVWDA  488 (1106)
Q Consensus       430 ~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~----~~~l~s~~~d~~i~iwd~  488 (1106)
                      ++....|.||-....+.-.....-..|...|-+|+|.++..    ...+++++-.|.+.+|++
T Consensus       183 SsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  183 SSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             ecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            98888888886654211111101113667899999987651    136888899999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=84.90  E-value=5  Score=40.65  Aligned_cols=75  Identities=13%  Similarity=0.100  Sum_probs=52.4

Q ss_pred             EecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccC-------CCCcCeEEEEEccCCCEEEEE
Q 001295          358 FHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVK-------DPGVSVNRVIWSPDGSLFGVA  430 (1106)
Q Consensus       358 ~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-------~h~~~V~~l~~spdg~~las~  430 (1106)
                      +..++.+ |.+-+.+|.+++||+.+++.+... ..+.           .++.       .....|..+.++.+|.-|++-
T Consensus        18 l~~~~~~-Ll~iT~~G~l~vWnl~~~k~~~~~-~Si~-----------pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l   84 (219)
T PF07569_consen   18 LECNGSY-LLAITSSGLLYVWNLKKGKAVLPP-VSIA-----------PLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL   84 (219)
T ss_pred             EEeCCCE-EEEEeCCCeEEEEECCCCeeccCC-ccHH-----------HHhcccccccCCCCCcEEEEEEcCCCCEEEEE
Confidence            5567887 556688999999999998876531 1111           1122       466789999999999887776


Q ss_pred             eCCCeEEEEEccCCce
Q 001295          431 YSRHIVQIYSYHGGDE  446 (1106)
Q Consensus       431 ~~d~~v~iwd~~~~~~  446 (1106)
                      + +|....|+.+-+..
T Consensus        85 s-ng~~y~y~~~L~~W   99 (219)
T PF07569_consen   85 S-NGDSYSYSPDLGCW   99 (219)
T ss_pred             e-CCCEEEecccccee
Confidence            5 57788888765443

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=84.39  E-value=27  Score=38.88  Aligned_cols=93  Identities=10%  Similarity=0.099  Sum_probs=62.6

Q ss_pred             cCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCC---CEEEEEECCC
Q 001295          512 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK---NRFLAAGDDF  588 (1106)
Q Consensus       512 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~d~  588 (1106)
                      ++.|..++-.|.+|.+.++-.+..+.-..+......|.|-.++-+. +++.....-.+..++|+|+.   ..++.-..|+
T Consensus       112 s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~-~~ftss~~ltl~Qa~WHP~S~~D~hL~iL~sdn  190 (741)
T KOG4460|consen  112 SPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAE-RFFTSSTSLTLKQAAWHPSSILDPHLVLLTSDN  190 (741)
T ss_pred             cCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccc-eeeccCCceeeeeccccCCccCCceEEEEecCc
Confidence            4556788888889987776544334444444444445555554443 55555555567778999985   7788889999


Q ss_pred             eEEEEECCCcceeEEEc
Q 001295          589 SIKFWDMDSVQLLTSID  605 (1106)
Q Consensus       589 ~i~iwd~~~~~~~~~~~  605 (1106)
                      .||+||+...+.+....
T Consensus       191 viRiy~lS~~telylqp  207 (741)
T KOG4460|consen  191 VIRIYSLSEPTELYLQP  207 (741)
T ss_pred             EEEEEecCCcchhhccC
Confidence            99999998776664443

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=84.39  E-value=31  Score=31.19  Aligned_cols=119  Identities=13%  Similarity=0.116  Sum_probs=66.6

Q ss_pred             EEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc-----CCCEEEE
Q 001295          355 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-----DGSLFGV  429 (1106)
Q Consensus       355 ~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-----dg~~las  429 (1106)
                      .-.|.....- |++++..|.|.|.+..........    +     ..+.   .+..-...|++++-.+     +...|+.
T Consensus         3 iGkfDG~~pc-L~~aT~~gKV~IH~ph~~~~~~~~----~-----~~~i---~~LNin~~italaaG~l~~~~~~D~Lli   69 (136)
T PF14781_consen    3 IGKFDGVHPC-LACATTGGKVFIHNPHERGQRTGR----Q-----DSDI---SFLNINQEITALAAGRLKPDDGRDCLLI   69 (136)
T ss_pred             EEEeCCCcee-EEEEecCCEEEEECCCcccccccc----c-----cCce---eEEECCCceEEEEEEecCCCCCcCEEEE
Confidence            3445555553 777778899999987654322110    0     0000   0122234677776444     3456776


Q ss_pred             EeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCC--ceEEEEecCCCcEEEEeCCCCc
Q 001295          430 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNK--QLCVITCGDDKTIKVWDATNGA  492 (1106)
Q Consensus       430 ~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~--~~~l~s~~~d~~i~iwd~~~~~  492 (1106)
                      |+. ..+..||+.....+-    ++.-.+.|+++.+-.-+.  ..+++.| .++.|.-+|.+-.+
T Consensus        70 Gt~-t~llaYDV~~N~d~F----yke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e  128 (136)
T PF14781_consen   70 GTQ-TSLLAYDVENNSDLF----YKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNE  128 (136)
T ss_pred             ecc-ceEEEEEcccCchhh----hhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcE
Confidence            664 569999999876553    334456788887732211  1134444 46778777744333

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=84.26  E-value=62  Score=34.50  Aligned_cols=147  Identities=14%  Similarity=0.131  Sum_probs=82.7

Q ss_pred             cEEEEeCCCCceeEEEecc------CCCeEEEeccccCC----ceEEEEEecCCeEEEEeCCCCCceeEeeCC-------
Q 001295          482 TIKVWDATNGAKQYIFEGH------EAPVYSVCPHHKEN----IQFIFSTALDGKIKAWLYDNLGSRVDYEAP-------  544 (1106)
Q Consensus       482 ~i~iwd~~~~~~~~~~~~h------~~~v~~~~~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------  544 (1106)
                      .|.+||+.+++.++++.-.      ...+..+.+.....    +...++-+..+.|.++|+.+++........       
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~  114 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA  114 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence            6778999999888776522      34566666654322    334445555678999999875443221110       


Q ss_pred             ------------CCeeEEEEEec---CCCeEE----------------------------------EeeeccceeEEEEc
Q 001295          545 ------------GRWCTTMAYSA---DGTRTY----------------------------------QGFRKRSLGVVQFD  575 (1106)
Q Consensus       545 ------------~~~v~~~~~s~---~~~~~~----------------------------------~~~~~~~i~~~~~~  575 (1106)
                                  ...+..++.++   +++.++                                  .|.+......+.++
T Consensus       115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D  194 (287)
T PF03022_consen  115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAID  194 (287)
T ss_dssp             EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEE
T ss_pred             cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEEC
Confidence                        11255666655   544222                                  12222355667888


Q ss_pred             CCCCEEEEEECCCeEEEEECCCc---ceeEEEccCCC-CCCcCeEEEcc--CCCEEEEE
Q 001295          576 TTKNRFLAAGDDFSIKFWDMDSV---QLLTSIDADGG-LPASPRIRFNK--DGCLLAVS  628 (1106)
Q Consensus       576 ~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~-~~~v~~v~~s~--~~~~l~~~  628 (1106)
                      ++|..+++--..+.|..|+..+.   +....+..... ...+..+.+.+  +|.+.+..
T Consensus       195 ~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  195 PNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             TTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred             CCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence            89998888889999999998761   12222222222 34556777777  66555544

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=84.00  E-value=1.3e+02  Score=38.03  Aligned_cols=417  Identities=14%  Similarity=0.100  Sum_probs=0.0

Q ss_pred             CcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccC-CCCcCeEEEEEcc-CCCEEEE
Q 001295          352 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVK-DPGVSVNRVIWSP-DGSLFGV  429 (1106)
Q Consensus       352 ~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~h~~~V~~l~~sp-dg~~las  429 (1106)
                      ...+++.-|||.  |..|..+-.=+|.--..-..+.+                   +. ....-=..+|.|| ||.+-++
T Consensus       366 aPvala~a~DGS--l~VGDfNyIRRI~~dg~v~tIl~-------------------L~~t~~sh~Yy~AvsPvdgtlyvS  424 (1899)
T KOG4659|consen  366 APVALAYAPDGS--LIVGDFNYIRRISQDGQVSTILT-------------------LGLTDTSHSYYIAVSPVDGTLYVS  424 (1899)
T ss_pred             ceeeEEEcCCCc--EEEccchheeeecCCCceEEEEE-------------------ecCCCccceeEEEecCcCceEEec


Q ss_pred             EeCCCeEEEEEccCCceeeeeeeeccccCCeeE----------------------EEEcCCCCceEEEEecCCCcEEEEe
Q 001295          430 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVND----------------------IAFSHPNKQLCVITCGDDKTIKVWD  487 (1106)
Q Consensus       430 ~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~----------------------~~~s~d~~~~~l~s~~~d~~i~iwd  487 (1106)
                      --..+.|.--.--.++....-...-.-++.+.-                      |+|+.+|.. +|+-|..   |++-|
T Consensus       425 dp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g~l-YfaD~t~---IR~iD  500 (1899)
T KOG4659|consen  425 DPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMGNL-YFADGTR---IRVID  500 (1899)
T ss_pred             CCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEccCCcE-EEecccE---EEEec


Q ss_pred             CCCCceeEEEeccCCCeE-------------EEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEe
Q 001295          488 ATNGAKQYIFEGHEAPVY-------------SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYS  554 (1106)
Q Consensus       488 ~~~~~~~~~~~~h~~~v~-------------~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  554 (1106)
                       ++|-.-..+..|.....             .+.| |..    |+..-.|+++.+.|                       
T Consensus       501 -~~giIstlig~~~~~~~p~~C~~~~kl~~~~leW-PT~----LaV~Pmdnsl~Vld-----------------------  551 (1899)
T KOG4659|consen  501 -TTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEW-PTS----LAVDPMDNSLLVLD-----------------------  551 (1899)
T ss_pred             -cCceEEEeccCCCCccCccccccccchhheeeec-ccc----eeecCCCCeEEEee-----------------------


Q ss_pred             cCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcE
Q 001295          555 ADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGI  634 (1106)
Q Consensus       555 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i  634 (1106)
                                   .-..+.+++++...+..+.--...+=++.....  .+..|.....-.+++++++|.+.++-++...|
T Consensus       552 -------------~nvvlrit~~~rV~Ii~GrP~hC~~a~~t~~~s--kla~H~tl~~~r~Iavg~~G~lyvaEsD~rri  616 (1899)
T KOG4659|consen  552 -------------TNVVLRITVVHRVRIILGRPTHCDLANATSSAS--KLADHRTLLIQRDIAVGTDGALYVAESDGRRI  616 (1899)
T ss_pred             -------------cceEEEEccCccEEEEcCCccccccCCCchhhh--hhhhhhhhhhhhceeecCCceEEEEeccchhh


Q ss_pred             EEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccC
Q 001295          635 KILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEES  714 (1106)
Q Consensus       635 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  714 (1106)
                      .-...-+....+..+.+......+.....-.+|+........+                                     
T Consensus       617 Nrvr~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A-------------------------------------  659 (1899)
T KOG4659|consen  617 NRVRKLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQA-------------------------------------  659 (1899)
T ss_pred             hheEEeccCceEEEecCCCCCCCcccccCCccccccchhhhcc-------------------------------------


Q ss_pred             CCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCC
Q 001295          715 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQP  794 (1106)
Q Consensus       715 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~  794 (1106)
                                                 +-..+.+++++|||...++-..+-.|+--.-+....++....-..        
T Consensus       660 ---------------------------~lnsp~alaVsPdg~v~IAD~gN~rIr~Vs~~~~~~~~sr~YEi~--------  704 (1899)
T KOG4659|consen  660 ---------------------------KLNSPYALAVSPDGDVIIADSGNSRIRKVSARMAKYDGSRTYEIT--------  704 (1899)
T ss_pred             ---------------------------ccCCcceEEECCCCcEEEecCCchhhhhhhhcccccCCCceeecc--------


Q ss_pred             CCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe---CCeEEEEEc---CCCceeeeecCCCCCeeEEEEecCCCceEE
Q 001295          795 PSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS---GGKISLFNM---MTFKTMATFMPPPPAATFLAFHPQDNNIIA  868 (1106)
Q Consensus       795 ~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s---dg~i~vwd~---~~~~~~~~~~~~~~~v~~l~~s~~d~~~la  868 (1106)
                                    ....-.--.|+.+|+..-+.+   ..++..|..   .+...+.++....+.+..+.-.. ++....
T Consensus       705 --------------~p~~QE~Y~Fnr~GqH~sTvsliTget~ynFtY~v~ss~~~lsei~~a~Gn~l~ilrd~-~s~~~~  769 (1899)
T KOG4659|consen  705 --------------DPERQEKYTFNRHGQHSSTVSLITGETFYNFTYQVDSSIGMLSEITDASGNVLRVLRDN-DSLFDL  769 (1899)
T ss_pred             --------------CcccceeEEEeccceeeeeEEEEeceeEEEEEEecCCCcchhhhhhhcCCcEEEEEecC-CCCcce


Q ss_pred             EeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCC-CcEEEEeCC
Q 001295          869 IGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD-SQLCVWSSD  924 (1106)
Q Consensus       869 ~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D-g~i~vwd~~  924 (1106)
                      -..-+|++..--......+..+......-..+.+.-....|++-..| |.-.+|+.+
T Consensus       770 ~~~~~~q~~~l~~~~~g~L~~vSt~d~~~~~~ty~g~tglL~Tk~d~tg~~~~yeYD  826 (1899)
T KOG4659|consen  770 ETTLGGQTTLLMSAYDGTLEQVSTRDATSRDATYLGYTGLLLTKRDDTGTAVVYEYD  826 (1899)
T ss_pred             eecCCCcEEEEEEecCCceeEeccCCCccceeeeeccccceeeeecccceEEEEccc

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=83.93  E-value=85  Score=35.83  Aligned_cols=75  Identities=21%  Similarity=0.318  Sum_probs=47.7

Q ss_pred             eccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCC
Q 001295          346 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  425 (1106)
Q Consensus       346 ~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~  425 (1106)
                      .+.-...|.++.|.-.|.  +-.|+.|| +..+|..+++.+....                  ......|.++.-+-.|+
T Consensus       160 ~ll~d~~V~aLv~D~~g~--lWvgT~dG-L~~fd~~~gkalql~s------------------~~~dk~I~al~~d~qg~  218 (671)
T COG3292         160 PLLKDTPVVALVFDANGR--LWVGTPDG-LSYFDAGRGKALQLAS------------------PPLDKAINALIADVQGR  218 (671)
T ss_pred             ccccCccceeeeeeccCc--EEEecCCc-ceEEccccceEEEcCC------------------CcchhhHHHHHHHhcCc
Confidence            334567899999999998  44456554 5567777777665310                  11114566666655665


Q ss_pred             EEEEEeCCCeEEEEEccC
Q 001295          426 LFGVAYSRHIVQIYSYHG  443 (1106)
Q Consensus       426 ~las~~~d~~v~iwd~~~  443 (1106)
                       |.+|+.+| |.+.+..+
T Consensus       219 -LWVGTdqG-v~~~e~~G  234 (671)
T COG3292         219 -LWVGTDQG-VYLQEAEG  234 (671)
T ss_pred             -EEEEeccc-eEEEchhh
Confidence             55677777 77777766

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=83.86  E-value=4.8  Score=40.78  Aligned_cols=67  Identities=9%  Similarity=0.171  Sum_probs=46.0

Q ss_pred             EccCCCEEEEEeCCCeEEEEEccCCceeeeee----eec-------cccCCeeEEEEcCCCCceEEEEecCCCcEEEEeC
Q 001295          420 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL----EID-------AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA  488 (1106)
Q Consensus       420 ~spdg~~las~~~d~~v~iwd~~~~~~~~~~~----~l~-------~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~  488 (1106)
                      +..++.+|++.+.+|.+++||+.+++.+....    .+.       .....|..+.++.+|.  -+++-+ +|..+.|+.
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~--PiV~ls-ng~~y~y~~   94 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV--PIVTLS-NGDSYSYSP   94 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC--EEEEEe-CCCEEEecc
Confidence            44579999999999999999999887643220    121       3456677888887776  445444 466777774


Q ss_pred             C
Q 001295          489 T  489 (1106)
Q Consensus       489 ~  489 (1106)
                      .
T Consensus        95 ~   95 (219)
T PF07569_consen   95 D   95 (219)
T ss_pred             c
Confidence            3

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=83.74  E-value=22  Score=39.52  Aligned_cols=42  Identities=19%  Similarity=0.186  Sum_probs=31.6

Q ss_pred             ccceEEEEeCCC--CCEEEEEeCCCcEEEEeecCCCCccCCCCC
Q 001295         1040 VHPLVIAAHPQE--PNEFALGLSDGGVHVFEPLESEGKWGVPPP 1081 (1106)
Q Consensus      1040 v~~~~~~~~~~d--~~~l~t~~~Dg~v~vW~~~~~~~~~~~~~~ 1081 (1106)
                      +....++|+|+.  ...|+.-+.|+.+++++.+.....|-.+.+
T Consensus       166 ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylqpge  209 (741)
T KOG4460|consen  166 LTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQPGE  209 (741)
T ss_pred             eeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhccCCC
Confidence            444478899864  467888888999999999988866655443

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.44  E-value=18  Score=39.50  Aligned_cols=141  Identities=6%  Similarity=0.061  Sum_probs=85.3

Q ss_pred             eeEEEEecCCCceEEEeeCCCcEEEEEeecc--eEEEEe-cCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCccccc
Q 001295          854 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD--EVKSKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK  930 (1106)
Q Consensus       854 v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~--~~~~~l-~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~  930 (1106)
                      .+.+-|.. .++.|+ +...|.+.=|-+...  ...-.+ ....++|.++.||+|.+.||.--.|.+|.+.+....+...
T Consensus        25 sngvFfDD-aNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l  102 (657)
T KOG2377|consen   25 SNGVFFDD-ANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL  102 (657)
T ss_pred             ccceeecc-CcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh
Confidence            34455543 333333 334455666655432  111122 2345689999999999999999999999999985432211


Q ss_pred             ceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCc-eEeeecccCCCCCCeeEEEECCCCCEEE
Q 001295          931 NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL-ECVKQWVPRESSAPITHATFSCDSQLVY 1003 (1106)
Q Consensus       931 ~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~-~~~~~~~~~~h~~~v~~l~~s~d~~~l~ 1003 (1106)
                          .....+......|...+|+.. .-+|...+..+.+|-.... +.++...  .|+..|.-..|.++-+.++
T Consensus       103 ----~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlVk--s~~~nvnWy~yc~et~v~L  169 (657)
T KOG2377|consen  103 ----EYTQECKTKNANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLVK--SHNLNVNWYMYCPETAVIL  169 (657)
T ss_pred             ----HHHHHhccCcceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhhh--hcccCccEEEEccccceEe
Confidence                111112222235788899877 6667767777777765432 2233332  5677888889999888643

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.44  E-value=96  Score=38.22  Aligned_cols=249  Identities=11%  Similarity=0.055  Sum_probs=115.4

Q ss_pred             EEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEE
Q 001295          749 LIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA  828 (1106)
Q Consensus       749 ~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~  828 (1106)
                      .++..-|+.+.+|+.+|.+.+|.+........... ..         .......    .-+..+|..+...+.-.++.+-
T Consensus        20 ~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~-~~---------~~~~~~~----~~~kk~i~~l~~~~~~~~ll~l   85 (877)
T KOG2063|consen   20 LCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVEL-VT---------ETVKFEK----EFSKKPINKLLVCASLELLLIL   85 (877)
T ss_pred             hHHHHhCCEEEEEcCCCcEEEEeccccccccchhh-hc---------chhHHhh----hhccchhHHHhhcchhcchhee
Confidence            44556677899999999999998765322111100 00         0000110    1135677777777777788888


Q ss_pred             eCCeEEEEEcCCCceeeeecCCCCCeeEEEEe--cC-CC--ceEEEee-CCCc-EEEEEeecceEEEEecCcccCeeEEE
Q 001295          829 SGGKISLFNMMTFKTMATFMPPPPAATFLAFH--PQ-DN--NIIAIGM-DDSS-IQIYNVRVDEVKSKLKGHSKRITGLA  901 (1106)
Q Consensus       829 sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s--~~-d~--~~la~g~-~dg~-v~iwd~~~~~~~~~l~~h~~~V~~l~  901 (1106)
                      +|+.|.++++.+.+.... ..+-..+...+..  +. .+  .+.++.+ .... ...|+-..+..+..--+-.....+++
T Consensus        86 ~dsqi~~~~l~~~~~~~~-~~~~Kg~~~f~~~~~~~s~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  164 (877)
T KOG2063|consen   86 SDSQIAVHKLPELEPVPS-GTRLKGASLFTIDLRPISTGPSVYEICLSVRKRLIRFFWNGRDGIVLVKELGFPDVPKARA  164 (877)
T ss_pred             cCCcceeeecCccccccc-ccccccceeeccccccccCCcceEEEEeeccceEEEEEecCCCceEEEEecccccchhhhc
Confidence            899999998876655211 1111111111110  00 01  1222222 1111 12222222222211111112222233


Q ss_pred             EecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCceEeee-
Q 001295          902 FSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQ-  980 (1106)
Q Consensus       902 ~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~~~~-  980 (1106)
                      |  .+..+.++-.+....+|.-.++......+.....     ...-..+.--.++..++.+.|+...+-|.......+. 
T Consensus       165 ~--~~~~~c~~~~~~~~ii~~~~~~~~~~~~~s~~~~-----~s~~P~I~~l~~~~~ll~~kd~~gv~vd~~G~~~~~~~  237 (877)
T KOG2063|consen  165 W--CGHIVCLGLKKSYYIINNTSKGVGPNLFPSSMDN-----ESRKPLIKSLSDQSELLLGKDNIGVVVDLNGIIAQRGT  237 (877)
T ss_pred             c--cceeEEEeecceeEEEecCCCccccceeeecccc-----ccCCCeEEEecCCceEEEccCceEEEEecCCcccCCCc
Confidence            3  2444444444344444544443211111111100     0122345555666677777777777777543221111 


Q ss_pred             cccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEee
Q 001295          981 WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1025 (1106)
Q Consensus       981 ~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~ 1025 (1106)
                      +.   -+....++.+  +.-|+++-+ ++.|.||+..++.+++.+
T Consensus       238 l~---ws~~P~~v~~--~~PYlIa~~-~~~veI~s~~~~qlvQSI  276 (877)
T KOG2063|consen  238 LV---WSEVPLSVVV--ESPYLIALL-DRSVEIRSKLDGQLVQSI  276 (877)
T ss_pred             eE---ecccchhhcc--cCceEEEEc-cccEEEEeccCHHHhhcc
Confidence            00   0112222222  456777654 669999999999888776

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=82.42  E-value=37  Score=38.48  Aligned_cols=108  Identities=7%  Similarity=0.063  Sum_probs=0.0

Q ss_pred             CCCceEEEcCCCcEEEEEe-CCeEEEEecCCceEeeecccC-----CCCCCeeEEEECCCC------CEEEEEE------
Q 001295          945 QSDTRVQFHQDQIHFLVVH-ETQLAIFETTKLECVKQWVPR-----ESSAPITHATFSCDS------QLVYACF------ 1006 (1106)
Q Consensus       945 ~~i~~~~~s~dg~~l~~~~-d~~v~i~d~~~~~~~~~~~~~-----~h~~~v~~l~~s~d~------~~l~t~s------ 1006 (1106)
                      .....++|.|||++|++-. .|.|++++..++.........     ........|+++|+-      .+|....      
T Consensus        30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~  109 (454)
T TIGR03606        30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGD  109 (454)
T ss_pred             CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCC


Q ss_pred             ----cCCeEEEEEcCCc--------eeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCC
Q 001295         1007 ----LDATVCVFSAANL--------KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG 1062 (1106)
Q Consensus      1007 ----~Dg~i~vwd~~~~--------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg 1062 (1106)
                          ....|.-|.+...        .++..+.    ....|...     .|.|.| ||.++++.++.+
T Consensus       110 ~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP----~~~~H~Gg-----rI~FgP-DG~LYVs~GD~g  167 (454)
T TIGR03606       110 KELPNHTKIVRYTYDKSTQTLEKPVDLLAGLP----AGNDHNGG-----RLVFGP-DGKIYYTIGEQG  167 (454)
T ss_pred             CCccCCcEEEEEEecCCCCccccceEEEecCC----CCCCcCCc-----eEEECC-CCcEEEEECCCC

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PRK13615 lipoprotein LpqB; Provisional

Probab=81.74  E-value=1.2e+02  Score=35.76  Aligned_cols=153  Identities=9%  Similarity=-0.028  Sum_probs=87.9

Q ss_pred             eeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCC-cccccce
Q 001295          854 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG-WEKQKNR  932 (1106)
Q Consensus       854 v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~-~~~~~~~  932 (1106)
                      ..+++.++ ++..+|....++.++++... +.....+.  ...++.-.|.++| ++-++..+...++..... ++.. ..
T Consensus       336 ~~s~avS~-dg~~~A~v~~~~~l~vg~~~-~~~~~~~~--~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~-~v  409 (557)
T PRK13615        336 ADAATLSA-DGRQAAVRNASGVWSVGDGD-RDAVLLDT--RPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGH-PV  409 (557)
T ss_pred             cccceEcC-CCceEEEEcCCceEEEecCC-Ccceeecc--CCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceE-Ee
Confidence            37889999 88888888778878887655 22222222  2246667787777 555544433455554433 2211 11


Q ss_pred             eecccCCCCCCCCCCceEEEcCCCcEEEEEe----CCeEEEEecC--Cc--eEe--eecccCCCCCCeeEEEECCCCCEE
Q 001295          933 FLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH----ETQLAIFETT--KL--ECV--KQWVPRESSAPITHATFSCDSQLV 1002 (1106)
Q Consensus       933 ~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~----d~~v~i~d~~--~~--~~~--~~~~~~~h~~~v~~l~~s~d~~~l 1002 (1106)
                      .....     ....|..+..|+||..++.-.    .++|.+--+.  .+  ..+  ...........+.++.|..+++++
T Consensus       410 ~v~~~-----~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~la  484 (557)
T PRK13615        410 AVSWT-----ATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDELDVA  484 (557)
T ss_pred             ecccc-----CCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCCCEEE
Confidence            11111     124799999999999998832    3566653332  22  122  111111123489999999999986


Q ss_pred             EEEE---cCCeEEEEEcC
Q 001295         1003 YACF---LDATVCVFSAA 1017 (1106)
Q Consensus      1003 ~t~s---~Dg~i~vwd~~ 1017 (1106)
                      +.+.   .+..+++..+.
T Consensus       485 Vl~~~~~~~~~v~~v~v~  502 (557)
T PRK13615        485 TLTLAPDGERQVELHQVG  502 (557)
T ss_pred             EEeccCCCCceEEEEECC
Confidence            6552   33556666665

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.53  E-value=33  Score=43.50  Aligned_cols=33  Identities=36%  Similarity=0.644  Sum_probs=27.1

Q ss_pred             CCcEEEEEecCCCeEEEEEeccCcEEEEecCCcc
Q 001295          351 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE  384 (1106)
Q Consensus       351 ~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~  384 (1106)
                      .....++|+|... ++|.|+..|.|.++-...-+
T Consensus        36 ~~~~~~afD~~q~-llai~t~tg~i~~yg~~~ve   68 (993)
T KOG1983|consen   36 STPSALAFDPTQG-LLAIGTRTGAIKIYGQPGVE   68 (993)
T ss_pred             CCCcceeeccccc-eEEEEEecccEEEecccceE
Confidence            3567789999988 79999999999999765443

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=81.51  E-value=24  Score=39.07  Aligned_cols=144  Identities=8%  Similarity=0.085  Sum_probs=83.9

Q ss_pred             CCceE-EEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCC--------CEEEEEcCCCcEEEEeCCC-cccccce
Q 001295          863 DNNII-AIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL--------NVLVSSGADSQLCVWSSDG-WEKQKNR  932 (1106)
Q Consensus       863 d~~~l-a~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~--------~~l~s~s~Dg~i~vwd~~~-~~~~~~~  932 (1106)
                      +..+| ..|..-..++--|+.-|+.+..+.-|..-  -|.|.|+.        +.|+-.|..+ |.--|.+- +.+.  .
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~s-vFrIDPR~~gNKi--~  552 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYS-VFRIDPRARGNKI--K  552 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccc-eEEecccccCCce--e
Confidence            44444 44555567888888999999999988775  47787753        3555555444 33333322 1111  1


Q ss_pred             eecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeE
Q 001295          933 FLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1011 (1106)
Q Consensus       933 ~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i 1011 (1106)
                      ......-..  ...-.+.. ...+.++|+ +..|.|++||--..+....++  +-...|..+..+.+|+++++.+ ..++
T Consensus       553 v~esKdY~t--Kn~Fss~~-tTesGyIa~as~kGDirLyDRig~rAKtalP--~lG~aIk~idvta~Gk~ilaTC-k~yl  626 (776)
T COG5167         553 VVESKDYKT--KNKFSSGM-TTESGYIAAASRKGDIRLYDRIGKRAKTALP--GLGDAIKHIDVTANGKHILATC-KNYL  626 (776)
T ss_pred             eeeehhccc--cccccccc-cccCceEEEecCCCceeeehhhcchhhhcCc--ccccceeeeEeecCCcEEEEee-cceE
Confidence            111111000  01112222 234456666 677899999976544433333  5578999999999999987666 4466


Q ss_pred             EEEEcC
Q 001295         1012 CVFSAA 1017 (1106)
Q Consensus      1012 ~vwd~~ 1017 (1106)
                      .+-|+.
T Consensus       627 lL~d~~  632 (776)
T COG5167         627 LLTDVP  632 (776)
T ss_pred             EEEecc
Confidence            666653

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=80.63  E-value=1.1e+02  Score=37.96  Aligned_cols=78  Identities=18%  Similarity=0.143  Sum_probs=52.6

Q ss_pred             CCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEee----CCCc----ccCCCCCCC-CccceEEEEeCCCCCEEEE
Q 001295          987 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI----NPSA----YLPAGVSSS-NVHPLVIAAHPQEPNEFAL 1057 (1106)
Q Consensus       987 ~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~----~~~~----~~~~~~~~~-~v~~~~~~~~~~d~~~l~t 1057 (1106)
                      ...|.+++...-+.+++.+..||+|.++|-.+.+.+...    ....    ....|-+-. .-.++.++||| .+..++.
T Consensus       259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSP-t~c~~v~  337 (753)
T PF11635_consen  259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSP-TMCSLVQ  337 (753)
T ss_pred             CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECc-ccceEEE
Confidence            567888988888889999999999999999888766554    2111    001110000 00234588999 4778888


Q ss_pred             EeCCCcEE
Q 001295         1058 GLSDGGVH 1065 (1106)
Q Consensus      1058 ~~~Dg~v~ 1065 (1106)
                      -..||.+.
T Consensus       338 ~~~~~~~~  345 (753)
T PF11635_consen  338 IDEDGKTK  345 (753)
T ss_pred             EecCCCce
Confidence            88888865

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PLN02193 nitrile-specifier protein

Probab=80.61  E-value=1.2e+02  Score=35.22  Aligned_cols=154  Identities=9%  Similarity=0.058  Sum_probs=75.2

Q ss_pred             CCceEEEeeCCC-----cEEEEEeecceE--EEEecC-cccCeeEEEEecCCCEEEEEcCCC-----cEEEEeCCCcccc
Q 001295          863 DNNIIAIGMDDS-----SIQIYNVRVDEV--KSKLKG-HSKRITGLAFSHALNVLVSSGADS-----QLCVWSSDGWEKQ  929 (1106)
Q Consensus       863 d~~~la~g~~dg-----~v~iwd~~~~~~--~~~l~~-h~~~V~~l~~s~d~~~l~s~s~Dg-----~i~vwd~~~~~~~  929 (1106)
                      ++++++.|+.++     .+.+||+.+.+-  +..+.. ...+-...+..-++++.+.|+.++     .+..||+.+.+  
T Consensus       228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~--  305 (470)
T PLN02193        228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKK--  305 (470)
T ss_pred             CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCE--
Confidence            667888887653     588888876432  222210 111111112223567777777653     35677776532  


Q ss_pred             cceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeC----CeEEEEecCCceEeeecccC--CCCCCeeEEEECCCCCEE
Q 001295          930 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHE----TQLAIFETTKLECVKQWVPR--ESSAPITHATFSCDSQLV 1002 (1106)
Q Consensus       930 ~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d----~~v~i~d~~~~~~~~~~~~~--~h~~~v~~l~~s~d~~~l 1002 (1106)
                       +..+........ ...-..++ .-+++.++. +.+    ..+.+||+.+.+-...-...  .......+ +..-+++++
T Consensus       306 -W~~~~~~~~~~~-~R~~~~~~-~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~-~~~~~~~iy  381 (470)
T PLN02193        306 -WFHCSTPGDSFS-IRGGAGLE-VVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFA-SAAVGKHIV  381 (470)
T ss_pred             -EEeCCCCCCCCC-CCCCcEEE-EECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeE-EEEECCEEE
Confidence             111211111000 00111222 235666655 333    46899999887654332110  00111112 222366777


Q ss_pred             EEEEcC--------------CeEEEEEcCCceeE
Q 001295         1003 YACFLD--------------ATVCVFSAANLKLR 1022 (1106)
Q Consensus      1003 ~t~s~D--------------g~i~vwd~~~~~~~ 1022 (1106)
                      +.|+.+              ..+.+||..+.+-.
T Consensus       382 v~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~  415 (470)
T PLN02193        382 IFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWE  415 (470)
T ss_pred             EECCccCCccccccCccceeccEEEEEcCcCEEE
Confidence            777753              24788898887654

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=80.39  E-value=1e+02  Score=34.39  Aligned_cols=159  Identities=13%  Similarity=0.055  Sum_probs=81.8

Q ss_pred             CCCEEEEEeCCeEEEEEcCCCceeeeecCCC-CCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcc---cC
Q 001295          821 NDSYVMSASGGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS---KR  896 (1106)
Q Consensus       821 ~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~-~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~---~~  896 (1106)
                      +|+.++...++.+..+|..+++......... ..+..-.+-. ++ .+..++.+|.+.-.+..+|+.+-....-.   ..
T Consensus       111 ~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~-~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~  188 (370)
T COG1520         111 DGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVG-DG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLS  188 (370)
T ss_pred             CCeEEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEc-Cc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccc
Confidence            7875555558899999998888887776555 1122222222 33 33334467888888888887765533211   11


Q ss_pred             eeEEEEecCCCEEEEEcC--CCcEEEEeCCCcccccceeecccCCCCCC--CCCCceEEEcCCCcEEEEEeCCeEEEEec
Q 001295          897 ITGLAFSHALNVLVSSGA--DSQLCVWSSDGWEKQKNRFLQIPTGRTPT--AQSDTRVQFHQDQIHFLVVHETQLAIFET  972 (1106)
Q Consensus       897 V~~l~~s~d~~~l~s~s~--Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~s~dg~~l~~~~d~~v~i~d~  972 (1106)
                      +.+-....++ .+..+..  ++.+.-.|..++............+....  ...+..-..--++...+.+.++.+...|.
T Consensus       189 ~~~~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~  267 (370)
T COG1520         189 IYGSPAIASG-TVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDA  267 (370)
T ss_pred             cccCceeecc-eEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEc
Confidence            1111112233 3333433  55566666666554433222222222110  00111111222333334456677888888


Q ss_pred             CCceEeeecc
Q 001295          973 TKLECVKQWV  982 (1106)
Q Consensus       973 ~~~~~~~~~~  982 (1106)
                      .+++.+-.+.
T Consensus       268 ~~G~~~W~~~  277 (370)
T COG1520         268 DTGELIWSFP  277 (370)
T ss_pred             CCCceEEEEe
Confidence            8888776655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	1106
2gnq_A	336	Structure Of Wdr5 Length = 336		3e-10
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-04
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		3e-10
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		1e-04
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		5e-10
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		9e-05
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		7e-10
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		1e-04
2g99_A	308	Structural Basis For The Specific Recognition Of Me		8e-10
2g99_A	308	Structural Basis For The Specific Recognition Of Me		1e-04
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		8e-10
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		1e-04
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		9e-10
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-04
2h9l_A	329	Wdr5delta23 Length = 329		9e-10
2h9l_A	329	Wdr5delta23 Length = 329		1e-04
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		9e-10
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		1e-04
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		9e-10
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		1e-04
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		9e-10
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		1e-04
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		1e-09
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		1e-04
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-09
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-04
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-09
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-04
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-09
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-04
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-09
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-04
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-09
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		4e-04
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-07
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		4e-06
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		4e-06
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		7e-06
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		9e-06
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		1e-05
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		2e-05
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		6e-05
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		9e-05
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		9e-05
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		1e-04
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		1e-04
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		2e-04
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		2e-04
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		2e-04
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		2e-04
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		2e-04
2pm9_A	416	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		4e-04
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		4e-04
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		5e-04
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		5e-04
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		6e-04
3jro_A	753	Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice		7e-04
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		7e-04
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		8e-04

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 49  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 104
Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 105 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 158
Query: 534 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 593
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 159 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 200
Query: 594 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 649
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 201 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 254

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 863  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 100  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 158
Query: 923  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 976
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 159  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 206
Query: 977  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1011
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 207  CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 240

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 47  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 102
Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 103 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 156
Query: 534 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 593
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 157 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 198
Query: 594 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 649
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 199 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 252

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 863  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 98   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 156
Query: 923  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 976
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 157  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 204
Query: 977  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1011
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 205  CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 238

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 31  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 87  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 140
Query: 534 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 593
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 141 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 594 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 649
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 183 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 236

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 863  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 82   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 140
Query: 923  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 976
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 141  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 977  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1011
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 189  CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 222

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 63.5 bits (153), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 31  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 87  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 140
Query: 534 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 593
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 141 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 594 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 649
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 183 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 236

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 863  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 82   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 140
Query: 923  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 976
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 141  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 977  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1011
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 189  CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 222

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 63.2 bits (152), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 21  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 76
Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 77  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 130
Query: 534 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 593
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 131 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 172
Query: 594 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 649
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 173 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 226

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 863  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 72   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 130
Query: 923  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 976
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 131  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 178
Query: 977  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1011
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 179  CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 212

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 63.2 bits (152), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 31  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 87  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 140
Query: 534 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 593
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 141 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 594 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 649
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 183 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 236

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 863  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 82   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 140
Query: 923  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 976
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 141  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 977  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1011
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 189  CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 222

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 25  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 80
Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 81  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 134
Query: 534 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 593
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 135 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 176
Query: 594 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 649
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 177 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 230

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 863  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 76   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 134
Query: 923  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 976
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 135  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 977  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1011
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 183  CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 216

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 42  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 97
Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 98  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 151
Query: 534 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 593
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 152 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 193
Query: 594 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 649
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 194 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 247

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 863  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 93   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 151
Query: 923  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 976
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 152  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 199
Query: 977  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1011
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 200  CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 233

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 26  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 81
Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 82  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 135
Query: 534 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 593
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 136 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 177
Query: 594 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 649
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 178 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 231

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 863  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 77   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 135
Query: 923  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 976
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 136  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 183
Query: 977  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1011
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 184  CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 217

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 30  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 85
Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 86  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 139
Query: 534 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 593
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 140 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 181
Query: 594 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 649
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 182 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 235

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 863  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 81   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 139
Query: 923  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 976
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 140  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 187
Query: 977  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1011
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 188  CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 221

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 25  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 80
Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 81  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 134
Query: 534 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 593
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 135 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 176
Query: 594 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 649
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 177 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 230

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 863  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 76   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 134
Query: 923  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 976
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 135  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 977  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1011
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 183  CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 216

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 24  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 79
Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 80  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 133
Query: 534 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 593
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 134 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 175
Query: 594 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 649
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 176 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 229

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 72/156 (46%), Gaps = 20/156 (12%)
Query: 862  QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 921
             D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W
Sbjct: 74   SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 133
Query: 922  SSDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKL 975
                          + TG   +T  A SD     H ++   L+V   ++    I++T   
Sbjct: 134  -------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 180
Query: 976  ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1011
            +C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 181  QCLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 215

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 28  AVSSVKFSPNGEWLAASSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 84  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 534 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 593
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 138 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 594 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 649
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 180 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 233

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 863  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 79   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 923  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 976
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 138  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 977  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1011
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 186  CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 219

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 28  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 84  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 534 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 593
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 138 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 594 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 649
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 180 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 233

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 863  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 79   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 923  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 976
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 138  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 977  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1011
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 186  CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 219

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 28  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 84  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 534 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 593
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 138 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 594 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 649
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 180 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 233

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 863  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 79   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 923  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 976
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 138  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 977  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1011
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 186  CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 219

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 107/236 (45%), Gaps = 30/236 (12%)
Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 28  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 84  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 534 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 593
                 D +  G    T+   +D            +  V F+   +  +++  D   + W
Sbjct: 138 ------DVKT-GMCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 594 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 649
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 180 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 233

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 863  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 79   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 923  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 976
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 138  ------------DVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 977  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1011
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 186  CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 219

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 107/236 (45%), Gaps = 30/236 (12%)
Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 28  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 84  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 534 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 593
                 D +  G    T+   +D            +  V F+   +  +++  D   + W
Sbjct: 138 ------DVKT-GMCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 594 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 649
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 180 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNDLKLWDYSKG-KCLKTY 233

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 70/152 (46%), Gaps = 20/152 (13%)
Query: 863  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 79   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 923  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 976
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 138  ------------DVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 977  CVKQWVPRESSAPITHATFSCDSQLVYACFLD 1008
            C+K  +  + + P++   FS + + + A  LD
Sbjct: 186  CLKTLI-DDDNPPVSFVKFSPNGKYILAATLD 216

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 100/224 (44%), Gaps = 36/224 (16%)
Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
           SV  V +SPDG     A     V++++ +G  ++ Q L    H   VN +AF  P+ Q  
Sbjct: 223 SVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLT--GHSSSVNGVAF-RPDGQ-T 276
Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
           + +  DDKT+K+W+  NG       GH + V+ V      + Q I S + D  +K  L++
Sbjct: 277 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVA--FSPDGQTIASASDDKTVK--LWN 331
Query: 534 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 593
             G  +                   +T  G      GV  F        +A DD ++K W
Sbjct: 332 RNGQHL-------------------QTLTGHSSSVWGVA-FSPDGQTIASASDDKTVKLW 371
Query: 594 DMDSVQLLTSIDADGGLPASPR-IRFNKDGCLLAVSTNDNGIKI 636
           + +  QLL ++    G  +S R + F+ DG  +A +++D  +K+
Sbjct: 372 NRNG-QLLQTLT---GHSSSVRGVAFSPDGQTIASASDDKTVKL 411

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 118/272 (43%), Gaps = 52/272 (19%)
Query: 338 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLG 397
           D+ KT +   N+      +DFHP +   +L     G + LW   ++  + +R+ +V    
Sbjct: 4   DIKKTFS---NRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQ--VEVRSIQV---- 53
Query: 398 ACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV 457
               P++A      G  + R  W   GS          +++++Y+ G++V   ++ +AH 
Sbjct: 54  -TETPVRA------GKFIARKNWIIVGS------DDFRIRVFNYNTGEKV---VDFEAHP 97
Query: 458 GGVNDIAFSHPNKQLCVITCGDDKTIKVWD-ATNGAKQYIFEGHEAPVYSVCPHHKENIQ 516
             +  IA  HP K   V++  DD T+K+W+   N A +  FEGHE  V  V  + K+   
Sbjct: 98  DYIRSIAV-HPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 517 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 576
           F  S  LD  +K W   +LG       P    TT              ++R +  V +  
Sbjct: 156 FA-SGCLDRTVKVW---SLGQ----STPNFTLTTG-------------QERGVNYVDYYP 194
Query: 577 TKNR--FLAAGDDFSIKFWDMDSVQLLTSIDA 606
             ++   + A DD +IK WD  +   + +++ 
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 118/272 (43%), Gaps = 52/272 (19%)
Query: 338 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLG 397
           D+ KT +   N+      +DFHP +   +L     G + LW   ++  + +R+ +V    
Sbjct: 4   DIKKTFS---NRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQ--VEVRSIQV---- 53
Query: 398 ACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV 457
               P++A      G  + R  W   GS          +++++Y+ G++V   ++ +AH 
Sbjct: 54  -TETPVRA------GKFIARKNWIIVGS------DDFRIRVFNYNTGEKV---VDFEAHP 97
Query: 458 GGVNDIAFSHPNKQLCVITCGDDKTIKVWD-ATNGAKQYIFEGHEAPVYSVCPHHKENIQ 516
             +  IA  HP K   V++  DD T+K+W+   N A +  FEGHE  V  V  + K+   
Sbjct: 98  DYIRSIAV-HPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 517 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 576
           F  S  LD  +K W   +LG       P    TT              ++R +  V +  
Sbjct: 156 FA-SGCLDRTVKVW---SLGQ----STPNFTLTTG-------------QERGVNYVDYYP 194
Query: 577 TKNR--FLAAGDDFSIKFWDMDSVQLLTSIDA 606
             ++   + A DD +IK WD  +   + +++ 
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/208 (20%), Positives = 81/208 (38%), Gaps = 45/208 (21%)
Query: 451 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 510
           L++  H GGV  + ++H      +++   D+T++VWD   G   ++FEGH + V  +   
Sbjct: 156 LQLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
Query: 511 HKENIQFIFSTALDGKIKAWLY------DNLGSRVDY--------EAP-------GRWCT 549
             +NI++I + + D  +  W         + G   DY        E P       G   +
Sbjct: 213 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS 272
Query: 550 TMAYSADGTRTYQGFRKRSLGV---------------------VQFDTTKNRFLAAGDDF 588
               S  G     G    +L V                       +D  + R ++A  D 
Sbjct: 273 VRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT 332
Query: 589 SIKFWDMDSVQLLTSIDADGGLPASPRI 616
           +I+ WD+++ +L+ ++     L    R+
Sbjct: 333 TIRIWDLENGELMYTLQGHTALVGLLRL 360

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 49.7 bits (117), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 117/272 (43%), Gaps = 52/272 (19%)
Query: 338 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLG 397
           D+ KT +   N+      +DFHP +   +L     G + LW      ++ +R+ +V    
Sbjct: 4   DIKKTFS---NRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNY--ETQVEVRSIQV---- 53
Query: 398 ACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV 457
               P++A      G  + R  W   GS          +++++Y+ G++V   ++ +AH 
Sbjct: 54  -TETPVRA------GKFIARKNWIIVGS------DDFRIRVFNYNTGEKV---VDFEAHP 97
Query: 458 GGVNDIAFSHPNKQLCVITCGDDKTIKVWD-ATNGAKQYIFEGHEAPVYSVCPHHKENIQ 516
             +  IA  HP K   V++  DD T+K+W+   N A +  FEGHE  V  V  + K+   
Sbjct: 98  DYIRSIAV-HPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 517 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 576
           F  S  LD  +K W   +LG       P    TT              ++R +  V +  
Sbjct: 156 FA-SGCLDRTVKVW---SLGQ----STPNFTLTTG-------------QERGVNYVDYYP 194
Query: 577 TKNR--FLAAGDDFSIKFWDMDSVQLLTSIDA 606
             ++   + A DD +IK WD  +   + +++ 
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 451 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 510
           L++  H GGV  + ++H      +++   D+T++VWD   G   ++FEGH + V  +   
Sbjct: 156 LQLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
Query: 511 HKENIQFIFSTALDGKIKAW 530
             +NI++I + + D  +  W
Sbjct: 213 EYKNIKYIVTGSRDNTLHVW 232

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 118/272 (43%), Gaps = 52/272 (19%)
Query: 338 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLG 397
           D+ KT +   N+      +DFHP +   +L     G + +W   ++  + +R+ +V    
Sbjct: 4   DIKKTFS---NRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQ--VEVRSIQV---- 53
Query: 398 ACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV 457
               P++A      G  + R  W   GS          +++++Y+ G++V   ++ +AH 
Sbjct: 54  -TETPVRA------GKFIARKNWIIVGS------DDFRIRVFNYNTGEKV---VDFEAHP 97
Query: 458 GGVNDIAFSHPNKQLCVITCGDDKTIKVWD-ATNGAKQYIFEGHEAPVYSVCPHHKENIQ 516
             +  IA  HP K   V++  DD T+K+W+   N A +  FEGHE  V  V  + K+   
Sbjct: 98  DYIRSIAV-HPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 517 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 576
           F  S  LD  +K W   +LG       P    TT              ++R +  V +  
Sbjct: 156 FA-SGCLDRTVKVW---SLGQ----STPNFTLTTG-------------QERGVNYVDYYP 194
Query: 577 TKNR--FLAAGDDFSIKFWDMDSVQLLTSIDA 606
             ++   + A DD +IK WD  +   + +++ 
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 88/208 (42%), Gaps = 29/208 (13%)
Query: 389 RNFKVWDLGA-CSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEV 447
           R+  VWD+ +   + L+  LV     +VN V    D      A     +++++    + V
Sbjct: 233 RSIAVWDMASPTDITLRRVLVGHRA-AVNVV--DFDDKYIVSASGDRTIKVWNTSTCEFV 289
Query: 448 RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 507
           R    ++ H  G+  + +    +   V++   D TI++WD   GA   + EGHE  V  +
Sbjct: 290 RT---LNGHKRGIACLQY----RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI 342
Query: 508 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 567
              +K     I S A DGKIK W   +L + +D  AP            GT   +   + 
Sbjct: 343 RFDNKR----IVSGAYDGKIKVW---DLVAALDPRAPA-----------GTLCLRTLVEH 384
Query: 568 SLGVVQFDTTKNRFLAAGDDFSIKFWDM 595
           S  V +    + + +++  D +I  WD 
Sbjct: 385 SGRVFRLQFDEFQIVSSSHDDTILIWDF 412

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 54/258 (20%), Positives = 95/258 (36%), Gaps = 34/258 (13%)
Query: 415 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCV 474
           V+ V+ S DG           ++++    G   R+ +    H   V  +AFS  N+Q  +
Sbjct: 66  VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV---GHTKDVLSVAFSSDNRQ--I 120
Query: 475 ITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQ--FIFSTALDGKIKAWLY 532
           ++   DKTIK+W+ T G  +Y  +      +  C     N     I S   D  +K W  
Sbjct: 121 VSGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 179
Query: 533 DNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF---- 588
            N   + ++     +  T+  S DG+    G +     +   +  K+ +   G D     
Sbjct: 180 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINAL 239
Query: 589 ---------------SIKFWDMDS-------VQLLTSIDADGGLPASPRIRFNKDGCLLA 626
                          SIK WD++         Q + S  +    P    + ++ DG  L 
Sbjct: 240 CFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF 299
Query: 627 VSTNDNGIKILATSDGIR 644
               DN +++   + G R
Sbjct: 300 AGYTDNLVRVWQVTIGTR 317

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 54/258 (20%), Positives = 95/258 (36%), Gaps = 34/258 (13%)
Query: 415 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCV 474
           V+ V+ S DG           ++++    G   R+ +    H   V  +AFS  N+Q  +
Sbjct: 89  VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV---GHTKDVLSVAFSSDNRQ--I 143
Query: 475 ITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQ--FIFSTALDGKIKAWLY 532
           ++   DKTIK+W+ T G  +Y  +      +  C     N     I S   D  +K W  
Sbjct: 144 VSGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 202
Query: 533 DNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF---- 588
            N   + ++     +  T+  S DG+    G +     +   +  K+ +   G D     
Sbjct: 203 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINAL 262
Query: 589 ---------------SIKFWDMDS-------VQLLTSIDADGGLPASPRIRFNKDGCLLA 626
                          SIK WD++         Q + S  +    P    + ++ DG  L 
Sbjct: 263 CFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF 322
Query: 627 VSTNDNGIKILATSDGIR 644
               DN +++   + G R
Sbjct: 323 AGYTDNLVRVWQVTIGTR 340

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 89/218 (40%), Gaps = 29/218 (13%)
Query: 453 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHK 512
           +  H   V  + F HP   + +++  +D TIKVWD   G  +   +GH   V  +   H 
Sbjct: 104 LSGHRSPVTRVIF-HPVFSV-MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH- 160
Query: 513 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 572
            + + + S + D  IK W +                       +  RT  G    ++  V
Sbjct: 161 -SGKLLASCSADMTIKLWDFQGF--------------------ECIRTMHG-HDHNVSSV 198
Query: 573 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN 632
                 +  ++A  D +IK W++ +   + +    G       +R N+DG L+A  +ND 
Sbjct: 199 SIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF--TGHREWVRMVRPNQDGTLIASCSNDQ 256
Query: 633 GIK--ILATSDGIRLLRTFENLAYDASRTSENSKPTIS 668
            ++  ++AT +    LR   ++    S   E+S  +IS
Sbjct: 257 TVRVWVVATKECKAELREHRHVVECISWAPESSYSSIS 294

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 425 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 484
           SLFG       + I+     +  +    +DAH   VN ++F+ P  +  + T   DKT+ 
Sbjct: 241 SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 299
Query: 485 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 538
           +WD  N   K + FE H+  ++ V   PH   N   + S+  D ++  W    +G  
Sbjct: 300 LWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLNVWDLSKIGEE 353

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 82/215 (38%), Gaps = 27/215 (12%)
Query: 415 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCV 474
           V  V+ S DG           ++++    G   R+ +    H   V  +AFS  N+Q  +
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFV---GHTKDVLSVAFSLDNRQ--I 487
Query: 475 ITCGDDKTIKVWDATNGAKQYIFEGHEAPV-YSVCPHHKENIQ--FIFSTALDGKIKAWL 531
           ++   D+TIK+W+     K  I EG E    +  C     N     I S + D  +K W 
Sbjct: 488 VSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWN 547
Query: 532 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK------------- 578
             N   R        + +T+A S DG+    G +   + +      K             
Sbjct: 548 LSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHA 607
Query: 579 -----NRF-LAAGDDFSIKFWDMDSVQLLTSIDAD 607
                NR+ L A  +  IK WD++S  ++  +  D
Sbjct: 608 LCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVD 642

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 425 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 484
           SLFG       + I+     +  +    +DAH   VN ++F+ P  +  + T   DKT+ 
Sbjct: 245 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 303
Query: 485 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 538
           +WD  N   K + FE H+  ++ V   PH   N   + S+  D ++  W    +G  
Sbjct: 304 LWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLHVWDLSKIGEE 357

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 425 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 484
           SLFG       + I+     +  +    +DAH   VN ++F+ P  +  + T   DKT+ 
Sbjct: 247 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 305
Query: 485 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 538
           +WD  N   K + FE H+  ++ V   PH   N   + S+  D ++  W    +G  
Sbjct: 306 LWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLHVWDLSKIGEE 359

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 425 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 484
           SLFG       + I+     +  +    +DAH   VN ++F+ P  +  + T   DKT+ 
Sbjct: 249 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 307
Query: 485 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 538
           +WD  N   K + FE H+  ++ V   PH   N   + S+  D ++  W    +G  
Sbjct: 308 LWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLHVWDLSKIGEE 361

>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 85/222 (38%), Gaps = 33/222 (14%)
Query: 342 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSM 401
           ++ R  N  SS  ++ F+  Q  +L  G N G+I                 +WD+  C+ 
Sbjct: 105 SMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIF----------------IWDMNKCTE 148
Query: 402 PLQAALVKDPG---VSVNRVI---WSPD-GSLFGVAYSRHIVQIYSYHGGDEVRQHLEID 454
                    PG    SV+ VI   W+     +F  A S +   I+      EV  HL   
Sbjct: 149 SPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVI-HLSYT 207
Query: 455 AHVGGVND---IAFSHPNKQLCVITC---GDDKTIKVWDATNGAK--QYIFEGHEAPVYS 506
           +   G+     +   HP     V T     +D +I +WD  N     Q + +GH+  + S
Sbjct: 208 SPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILS 267
Query: 507 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWC 548
           +   H++    + S+  D  +  W  ++      + A G WC
Sbjct: 268 LDWCHQDE-HLLLSSGRDNTVLLWNPESAEQLSQFPARGNWC 308

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 10/109 (9%)
Query: 450 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC- 508
           H  +  H   V+D+A S  N     I+   DKT+++WD   G     F GH++ VYSV  
Sbjct: 69  HKALTGHNHFVSDLALSQEN--CFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAF 126
Query: 509 -PHHKENIQFIFSTALDGKIKAW--LYDNLGSRVDYEAPGRWCTTMAYS 554
            P +++    I S   + +IK W  L +   S  + E    W + + YS
Sbjct: 127 SPDNRQ----ILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYS 171

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 76/191 (39%), Gaps = 32/191 (16%)
Query: 414  SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
            +V  + ++ DG     +    ++Q++++  GD V     + AH   V D      ++   
Sbjct: 1012 AVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF----LQAHQETVKDFRLLQDSR--- 1064
Query: 474  VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
            +++   D T+KVW+   G  +  F  H+  V S C    +  +F  ST+ D   K W +D
Sbjct: 1065 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLS-CAISSDATKF-SSTSADKTAKIWSFD 1122
Query: 534  NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD-FSIKF 592
             L    + +         A+S DG                        LA GDD   I+ 
Sbjct: 1123 LLSPLHELKGHNGCVRCSAFSLDGI----------------------LLATGDDNGEIRI 1160
Query: 593  WDMDSVQLLTS 603
            W++   QLL S
Sbjct: 1161 WNVSDGQLLHS 1171

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 76/191 (39%), Gaps = 32/191 (16%)
Query: 414  SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
            +V  + ++ DG     +    ++Q++++  GD V     + AH   V D      ++   
Sbjct: 1005 AVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF----LQAHQETVKDFRLLQDSR--- 1057
Query: 474  VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
            +++   D T+KVW+   G  +  F  H+  V S C    +  +F  ST+ D   K W +D
Sbjct: 1058 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLS-CAISSDATKF-SSTSADKTAKIWSFD 1115
Query: 534  NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD-FSIKF 592
             L    + +         A+S DG                        LA GDD   I+ 
Sbjct: 1116 LLSPLHELKGHNGCVRCSAFSLDGI----------------------LLATGDDNGEIRI 1153
Query: 593  WDMDSVQLLTS 603
            W++   QLL S
Sbjct: 1154 WNVSDGQLLHS 1164

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 7/117 (5%)
Query: 425 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 484
           SLFG       + I+        +    +DAH   VN ++F+ P  +  + T   DKT+ 
Sbjct: 243 SLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 301
Query: 485 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 538
           +WD  N   K + FE H+  ++ V   PH   N   + S+  D ++  W    +G  
Sbjct: 302 LWDLRNLKLKLHTFESHKDEIFQVHWSPH---NETILASSGTDRRLNVWDLSKIGEE 355

>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 14/96 (14%)
Query: 454 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--FEGHEAPVYSVCPHH 511
           +AH   ++D    +  K+L   TC  DKTIK+++      + I    GHE PV+ V   H
Sbjct: 6   NAHNELIHDAVLDYYGKRLA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 512 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW 547
            +    + S + DGK+  W  +N          GRW
Sbjct: 64  PKFGTILASCSYDGKVLIWKEEN----------GRW 89

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 7/117 (5%)
Query: 425 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 484
           SLFG       + I+        +    +DAH   VN ++F+ P  +  + T   DKT+ 
Sbjct: 243 SLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 301
Query: 485 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 538
           +WD  N   K + FE H+  ++ V   PH   N   + S+  D ++  W    +G  
Sbjct: 302 LWDLRNLKLKLHTFESHKDEIFQVHWSPH---NETILASSGTDRRLNVWDLSKIGEE 355

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 65/170 (38%), Gaps = 26/170 (15%)
Query: 499 GHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD 556
           GH APV  +  CPH   N   I S + D  +  W   + G  +    P            
Sbjct: 79  GHTAPVLDIAWCPH---NDNVIASGSEDCTVMVWEIPDGGLVLPLREP------------ 123
Query: 557 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRI 616
              T +G  KR   V    T +N  L+AG D  I  WD+ +   + ++  D        +
Sbjct: 124 -VITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSV 182
Query: 617 RFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 666
            +++DG L+  S  D  ++++    G         +  +  R  E ++P 
Sbjct: 183 DWSRDGALICTSCRDKRVRVIEPRKG--------TVVAEKDRPHEGTRPV 224

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	1106
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1k32_A	1045	Tricorn protease; protein degradation, substrate g	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1k32_A	1045	Tricorn protease; protein degradation, substrate g	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.98
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.98
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.95
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.95
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.92
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.92
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.92
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.91
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.91
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.89
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.89
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.89
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.89
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.88
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.88
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.87
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.87
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.87
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.86
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.86
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.86
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.85
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.84
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.84
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.84
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.84
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.83
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.83
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.82
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.82
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.81
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.81
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.8
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.8
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.8
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.8
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.79
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.75
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.75
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.74
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.74
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.71
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.68
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.68
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.67
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.67
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.67
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.67
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.66
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.65
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.64
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.64
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.63
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.62
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.61
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.58
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.56
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.56
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.56
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.55
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.55
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.55
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.54
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.53
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.53
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.53
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.53
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.52
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.51
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.51
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.51
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.51
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.5
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.49
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.48
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.46
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.46
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.44
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.42
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.38
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.37
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.37
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.37
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.36
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.35
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.31
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.29
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.29
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.28
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.27
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.26
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.26
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.25
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.22
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.21
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.21
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.2
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.2
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.19
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.18
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.17
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.16
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.14
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.14
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.13
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.12
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.12
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.1
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.09
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.08
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.05
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.03
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.02
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.0
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.94
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.92
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.9
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.9
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.89
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.89
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.77
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.76
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.76
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.76
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.73
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.72
3ott_A	758	Two-component system sensor histidine kinase; beta	98.68
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.66
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.64
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.63
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.63
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.63
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.63
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.6
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.54
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.52
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.5
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.49
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.48
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.48
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.48
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.47
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.44
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.38
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.38
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.37
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.36
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.33
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.29
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.28
3ott_A	758	Two-component system sensor histidine kinase; beta	98.24
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.21
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.2
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.19
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.18
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.16
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.15
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.13
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.09
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.09
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.06
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.05
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.04
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.03
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.96
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.9
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.9
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.86
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.86
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.83
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.79
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.78
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.74
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.62
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.59
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.51
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.51
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.48
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.45
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.38
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.35
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.35
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.29
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.23
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.23
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.23
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.04
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.02
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.96
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.91
2xtc_A	90	F-box-like/WD repeat-containing protein TBL1X; tra	96.91
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.81
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.59
2nxp_A	156	Transcription initiation factor TFIID subunit 5; t	96.52
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.51
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.36
2j4b_A	138	TAF5, transcription initiation factor TFIID subuni	96.31
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.31
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.28
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.24
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.23
2j49_A	148	Transcription initiation factor TFIID subunit 5; n	96.19
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.16
1uuj_A	88	Platelet-activating factor acetylhydrolase IB ALP	96.1
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	95.94
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	95.94
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.86
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.77
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	95.69
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.66
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.59
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.54
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.53
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.42
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.41
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.26
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.24
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	95.05
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	94.99
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	94.69
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	94.69
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	93.99
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	93.47
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	93.38
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	93.2
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	92.86
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	92.83
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	92.03
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	90.43
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	89.0
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	87.48
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	86.22
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	83.2
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	81.43
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	81.09

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=5.3e-67  Score=632.42  Aligned_cols=566  Identities=23%  Similarity=0.361  Sum_probs=469.1

Q ss_pred             eeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccC
Q 001295          344 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  423 (1106)
Q Consensus       344 ~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd  423 (1106)
                      .++.+|++.|+|++|||||++ ||+|+.|++|+|||. +++.+.                   .+.+|.+.|++++||||
T Consensus        10 ~~L~GH~~~V~~~a~spdg~~-las~~~d~~v~iWd~-~~~~~~-------------------~l~gh~~~V~~l~fspd   68 (577)
T 2ymu_A           10 NRLEAHSSSVRGVAFSPDGQT-IASASDDKTVKLWNR-NGQLLQ-------------------TLTGHSSSVWGVAFSPD   68 (577)
T ss_dssp             EEECCCSSCEEEEEECTTSSC-EEEEETTSEEEEECT-TSCEEE-------------------EEECCSSCEEEEEECTT
T ss_pred             eEECCCCCcEEEEEECCCCCE-EEEEeCCCEEEEEEC-CCCEEE-------------------EEeCCCCCEEEEEECCC
Confidence            345569999999999999995 999999999999995 566654                   37899999999999999


Q ss_pred             CCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCC
Q 001295          424 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP  503 (1106)
Q Consensus       424 g~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~  503 (1106)
                      |++||+++.|++|+|||+. ++.+.   .+.+|...|.+++|+|+++  +|++++.|+.+++|+.. ........+|...
T Consensus        69 g~~las~~~d~~i~vWd~~-~~~~~---~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~-~~~~~~~~~~~~~  141 (577)
T 2ymu_A           69 GQTIASASDDKTVKLWNRN-GQLLQ---TLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRN-GQLLQTLTGHSSS  141 (577)
T ss_dssp             SSEEEEEETTSCEEEEETT-SCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETT-CCEEEEECCCSSC
T ss_pred             CCEEEEEeCCCEEEEEECC-CCEEE---EEECCCCCEEEEEECCCCC--EEEEEcCCCceeecccc-cceeeeccCCCCc
Confidence            9999999999999999975 44443   6889999999999999999  89999999999999955 4556777889999


Q ss_pred             eEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEE
Q 001295          504 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA  583 (1106)
Q Consensus       504 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  583 (1106)
                      |.++.++++  +..+++++.++.+++|+... ........+...+..+.++|+                     +.++++
T Consensus       142 v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~---------------------~~~l~~  197 (577)
T 2ymu_A          142 VWGVAFSPD--GQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPD---------------------GQTIAS  197 (577)
T ss_dssp             EEEEEECTT--SSCEEEEETTSEEEEECTTS-CEEEEEECCSSCEEEEEECTT---------------------SSCEEE
T ss_pred             eeeeeeecC--Cccceecccccceeccccce-eeeeeccCCCcceeeeeecCC---------------------CCEEEE
Confidence            999997654  46899999999999998653 333344445555555555554                     457999


Q ss_pred             EECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCC
Q 001295          584 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS  663 (1106)
Q Consensus       584 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  663 (1106)
                      ++.|+.|++||. +++.+..+..+  ...|.+++|+|++++|++++.|+.|++||...  +.+..+.+|...+.      
T Consensus       198 ~~~d~~v~~w~~-~~~~~~~~~~~--~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~--~~~~~~~~~~~~v~------  266 (577)
T 2ymu_A          198 ASDDKTVKLWNR-NGQLLQTLTGH--SSSVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVN------  266 (577)
T ss_dssp             EETTSEEEEECT-TSCEEEEEECC--SSCEEEEEECTTSSCEEEEETTSCEEEECTTS--CEEEEECCCSSCEE------
T ss_pred             EcCCCEEEEEeC-CCcEEEEEecC--CCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC--CEEEEEecCCCCEE------
Confidence            999999999996 56777888766  44799999999999999999999999999643  34444555443322      


Q ss_pred             CCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccc
Q 001295          664 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRA  743 (1106)
Q Consensus       664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~  743 (1106)
                                                         .+.+.+++..+++++.|+.+++|+...    .....+    .+|.
T Consensus       267 -----------------------------------~v~~~~d~~~l~~~~~d~~i~~w~~~~----~~~~~~----~~h~  303 (577)
T 2ymu_A          267 -----------------------------------GVAFRPDGQTIASASDDKTVKLWNRNG----QLLQTL----TGHS  303 (577)
T ss_dssp             -----------------------------------EEEECTTSSEEEEEETTSCEEEEETTS----CEEEEE----CCCS
T ss_pred             -----------------------------------EEEEcCCCCEEEEEeCCCEEEEEeCCC----cEEEEE----ecCC
Confidence                                               123456788999999999999999653    122222    3588


Q ss_pred             cceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCC
Q 001295          744 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS  823 (1106)
Q Consensus       744 ~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~  823 (1106)
                      ..|.+++|+|+++.+++++.|+.+++|++...                      ....  +.  .|...+.+++|+|+++
T Consensus       304 ~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~----------------------~~~~--~~--~~~~~v~~~~~s~~g~  357 (577)
T 2ymu_A          304 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ----------------------HLQT--LT--GHSSSVWGVAFSPDGQ  357 (577)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTSC----------------------EEEE--EC--CCSSCEEEEEECTTSS
T ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC----------------------eeEE--Ee--CCCCCEEEEEECCCCC
Confidence            99999999999999999999999999986521                      1111  22  2888999999999999


Q ss_pred             EEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEE
Q 001295          824 YVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAF  902 (1106)
Q Consensus       824 ~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~  902 (1106)
                      +|++++ |+.|++||. +++.+..+.+|...|++++|+| ++++|++++.|+.|++||. +++.+..+.+|...|++++|
T Consensus       358 ~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~  434 (577)
T 2ymu_A          358 TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAF  434 (577)
T ss_dssp             EEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEE
T ss_pred             EEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEE
Confidence            999998 899999995 5678888999999999999999 9999999999999999995 57888999999999999999


Q ss_pred             ecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEecCCceEeeec
Q 001295          903 SHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQW  981 (1106)
Q Consensus       903 s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d~~~~~~~~~~  981 (1106)
                      +||+++|++++.|++|++||... +     .+....+|.   ..|.+++|+||+++|++ +.|+.|++||. +++++..+
T Consensus       435 s~d~~~l~~~~~d~~v~~w~~~~-~-----~~~~~~~~~---~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~  504 (577)
T 2ymu_A          435 SPDDQTIASASDDKTVKLWNRNG-Q-----LLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL  504 (577)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTS-C-----EEEEEECCS---SCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEE
T ss_pred             CCCCCEEEEEcCCCEEEEEECCC-C-----EEEEEcCCC---CCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEE
Confidence            99999999999999999999754 2     233344554   37899999999999999 58899999995 57777777


Q ss_pred             ccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCC
Q 001295          982 VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD 1061 (1106)
Q Consensus       982 ~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~D 1061 (1106)
                      .  +|...|++++|+|||++||+++.||+|+|||. +++.+..+.       +|.. .|.  .++|+| |+++|++++.|
T Consensus       505 ~--~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~-------~h~~-~v~--~~~fs~-dg~~l~s~~~D  570 (577)
T 2ymu_A          505 T--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-------GHSS-SVW--GVAFSP-DGQTIASASSD  570 (577)
T ss_dssp             E--CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE-------CCSS-CEE--EEEECT-TSSCEEEEETT
T ss_pred             e--CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc-------CCCC-CEE--EEEEcC-CCCEEEEEeCC
Confidence            6  89999999999999999999999999999996 677777665       4433 366  899999 78999999999


Q ss_pred             CcEEEEe
Q 001295         1062 GGVHVFE 1068 (1106)
Q Consensus      1062 g~v~vW~ 1068 (1106)
                      |+|++||
T Consensus       571 ~~i~~Wd  577 (577)
T 2ymu_A          571 KTVKLWN  577 (577)
T ss_dssp             SCEEEEC
T ss_pred             CEEEEeC
Confidence            9999997

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=9e-66  Score=621.38  Aligned_cols=578  Identities=14%  Similarity=0.135  Sum_probs=450.9

Q ss_pred             CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEE
Q 001295          349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  428 (1106)
Q Consensus       349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  428 (1106)
                      +.+.+.+++|||||++ ||+++ +++|+|||+.+++...                   .+.+|...|++++|||||++||
T Consensus        17 ~~g~~~~~~~spdg~~-l~~~~-~~~v~l~~~~~~~~~~-------------------~~~~h~~~v~~~~~spdg~~la   75 (611)
T 1nr0_A           17 ARGTAVVLGNTPAGDK-IQYCN-GTSVYTVPVGSLTDTE-------------------IYTEHSHQTTVAKTSPSGYYCA   75 (611)
T ss_dssp             CTTCCCCCEECTTSSE-EEEEE-TTEEEEEETTCSSCCE-------------------EECCCSSCEEEEEECTTSSEEE
T ss_pred             ccCceeEEeeCCCCCE-EEeCC-CCEEEEecCCCcccCe-------------------EecCCCCceEEEEECCCCcEEE
Confidence            5788999999999995 88877 5799999998877655                   3789999999999999999999


Q ss_pred             EEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCC----CcEEEEeCCCCceeEEEeccCCCe
Q 001295          429 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD----KTIKVWDATNGAKQYIFEGHEAPV  504 (1106)
Q Consensus       429 s~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~h~~~v  504 (1106)
                      +|+.|++|+|||+.+++... ...+.+|.+.|.+++|+||++  .|++++.+    +.|++||  +++....+.+|...|
T Consensus        76 sg~~d~~v~lWd~~~~~~~~-~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v  150 (611)
T 1nr0_A           76 SGDVHGNVRIWDTTQTTHIL-KTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAM  150 (611)
T ss_dssp             EEETTSEEEEEESSSTTCCE-EEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCE
T ss_pred             EEeCCCCEEEeECCCCccee-eEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEee--CCCCcceecCCCCCc
Confidence            99999999999997655432 235788999999999999999  67777654    3677776  567778899999999


Q ss_pred             EEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEE
Q 001295          505 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  584 (1106)
Q Consensus       505 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  584 (1106)
                      .+++|+++.. ..|++|+.|++|++||..+.+....+..|...|.+++|+|+++                     +|+++
T Consensus       151 ~~v~f~p~~~-~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~---------------------~las~  208 (611)
T 1nr0_A          151 NSVDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGS---------------------LFAST  208 (611)
T ss_dssp             EEEEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSS---------------------EEEEE
T ss_pred             eEEEECCCCC-eEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCC---------------------EEEEE
Confidence            9999977542 3699999999999999887766677777777777777777665                     79999


Q ss_pred             ECCCeEEEEECCCcceeEEEccC-----CCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccC
Q 001295          585 GDDFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT  659 (1106)
Q Consensus       585 ~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  659 (1106)
                      +.|+.|++||+.+++.+..+...     .|...|.+++|+|++++|++++.|++|++||+.++ +....+..+....   
T Consensus       209 s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~-~~~~~~~~~~~~~---  284 (611)
T 1nr0_A          209 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL-KVEKTIPVGTRIE---  284 (611)
T ss_dssp             ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-EEEEEEECCSSGG---
T ss_pred             ECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCC-ceeeeecCCCCcc---
Confidence            99999999999999988887421     34568999999999999999999999999999887 3333332211000   


Q ss_pred             CCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCc
Q 001295          660 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE  739 (1106)
Q Consensus       660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~  739 (1106)
                                                           ........++..+++++.|+.+++|+.....   ....    .
T Consensus       285 -------------------------------------~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~---~~~~----~  320 (611)
T 1nr0_A          285 -------------------------------------DQQLGIIWTKQALVSISANGFINFVNPELGS---IDQV----R  320 (611)
T ss_dssp             -------------------------------------GCEEEEEECSSCEEEEETTCCEEEEETTTTE---EEEE----E
T ss_pred             -------------------------------------ceeEEEEEcCCEEEEEeCCCcEEEEeCCCCC---cceE----E
Confidence                                                 0000011256789999999999999976532   1111    1


Q ss_pred             cccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEe
Q 001295          740 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS  819 (1106)
Q Consensus       740 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s  819 (1106)
                      .+|...|.+++|+|++++|++++.|+.|++||+..                      +.......  ..|...|.+++|+
T Consensus       321 ~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~----------------------~~~~~~~~--~~h~~~v~~~~~s  376 (611)
T 1nr0_A          321 YGHNKAITALSSSADGKTLFSADAEGHINSWDIST----------------------GISNRVFP--DVHATMITGIKTT  376 (611)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT----------------------CCEEECSS--CSCSSCEEEEEEC
T ss_pred             cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC----------------------Cceeeecc--cCCcceEEEEEEC
Confidence            35899999999999999999999999999998763                      22222111  2388999999999


Q ss_pred             cCCCEEEEEe-CCeEEEEEcCCCceeee---ecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCccc
Q 001295          820 KNDSYVMSAS-GGKISLFNMMTFKTMAT---FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK  895 (1106)
Q Consensus       820 ~~~~~l~~~s-dg~i~vwd~~~~~~~~~---~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~  895 (1106)
                      +++. +++++ |+++++|++.++.....   .........+++|+| ++.+++++ .++.+++|+  .++ +..+. |..
T Consensus       377 ~~~~-l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~~~-~~~~v~~~~--~~~-~~~~~-~~~  449 (611)
T 1nr0_A          377 SKGD-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSA-DGDIAVAA-CYKHIAIYS--HGK-LTEVP-ISY  449 (611)
T ss_dssp             TTSC-EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECT-TSSCEEEE-ESSEEEEEE--TTE-EEEEE-CSS
T ss_pred             CCCc-EEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeC-CCcEEEEE-eCceEEEEe--CCc-eeeee-cCC
Confidence            8775 55555 99999999887543321   011234568899999 78777776 467899998  444 55554 888


Q ss_pred             CeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEecCC
Q 001295          896 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTK  974 (1106)
Q Consensus       896 ~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d~~~  974 (1106)
                      .+.+++|+|||++||+|+.|++|++||+.++....   ... .+|.   ..|.+++|+|||++|++ +.|+.|++||+.+
T Consensus       450 ~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~---~~~-~~h~---~~v~~v~fspdg~~las~s~d~~v~~w~~~~  522 (611)
T 1nr0_A          450 NSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE---VKT-IVHP---AEITSVAFSNNGAFLVATDQSRKVIPYSVAN  522 (611)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEE---EEE-EECS---SCEEEEEECTTSSEEEEEETTSCEEEEEGGG
T ss_pred             CceEEEEeCCCCEEEEeCCCCeEEEEEccCCceee---eec-cCCC---CceEEEEECCCCCEEEEEcCCCCEEEEEcCC
Confidence            89999999999999999999999999998753211   112 2333   47899999999999999 5899999999988


Q ss_pred             -ceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEE-eeCCCcccCCCCCCCCccceEEEEeCCCC
Q 001295          975 -LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRC-RINPSAYLPAGVSSSNVHPLVIAAHPQEP 1052 (1106)
Q Consensus       975 -~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~d~ 1052 (1106)
                       ++++......+|...|++++|+|||++||+|+.|++|+|||+.++.... ..      ..+|....|.  +++|+| |+
T Consensus       523 ~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~------~~~h~~~~v~--~v~fs~-d~  593 (611)
T 1nr0_A          523 NFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIII------KGAHAMSSVN--SVIWLN-ET  593 (611)
T ss_dssp             TTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEE------TTSSTTSCEE--EEEEEE-TT
T ss_pred             CCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchh------hccCcccCee--EEEEcC-CC
Confidence             6665442233599999999999999999999999999999998875321 11      1244234466  899999 56


Q ss_pred             CEEEEEeCCCcEEEEeec
Q 001295         1053 NEFALGLSDGGVHVFEPL 1070 (1106)
Q Consensus      1053 ~~l~t~~~Dg~v~vW~~~ 1070 (1106)
                      + |++++.||+|++|++.
T Consensus       594 ~-l~s~~~D~~i~lW~~~  610 (611)
T 1nr0_A          594 T-IVSAGQDSNIKFWNVP  610 (611)
T ss_dssp             E-EEEEETTSCEEEEECC
T ss_pred             E-EEEecCCCCEEEEecc
Confidence            6 9999999999999973

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2.6e-61  Score=582.57  Aligned_cols=563  Identities=23%  Similarity=0.355  Sum_probs=459.1

Q ss_pred             ccccCCCCCCcccccccccCcccccCCCCCC-----CCCCCCCCCCCCCcceeeecc-CCCCcEEEEEecCCCeEEEEEe
Q 001295          297 SKRTRPIGISDEINLPVNVLPVSFTGHSHSH-----SHSQAFSTPEDLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGT  370 (1106)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~g~~llatg~  370 (1106)
                      +++.++.||.+.|      ..+.|++++...     .....+|.   ...+....+. |...|++++|||||++ ||+|+
T Consensus         7 ~e~~~L~GH~~~V------~~~a~spdg~~las~~~d~~v~iWd---~~~~~~~~l~gh~~~V~~l~fspdg~~-las~~   76 (577)
T 2ymu_A            7 KERNRLEAHSSSV------RGVAFSPDGQTIASASDDKTVKLWN---RNGQLLQTLTGHSSSVWGVAFSPDGQT-IASAS   76 (577)
T ss_dssp             CEEEEECCCSSCE------EEEEECTTSSCEEEEETTSEEEEEC---TTSCEEEEEECCSSCEEEEEECTTSSE-EEEEE
T ss_pred             EEeeEECCCCCcE------EEEEECCCCCEEEEEeCCCEEEEEE---CCCCEEEEEeCCCCCEEEEEECCCCCE-EEEEe
Confidence            4566777887763      445555554421     11233444   2344555555 9999999999999995 99999


Q ss_pred             ccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeee
Q 001295          371 NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQH  450 (1106)
Q Consensus       371 ~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~  450 (1106)
                      .|++|+|||.. ++.+.                   .+.+|...|.+++|+||+++|++++.|+.+++|+.......   
T Consensus        77 ~d~~i~vWd~~-~~~~~-------------------~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~---  133 (577)
T 2ymu_A           77 DDKTVKLWNRN-GQLLQ-------------------TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ---  133 (577)
T ss_dssp             TTSCEEEEETT-SCEEE-------------------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEE---
T ss_pred             CCCEEEEEECC-CCEEE-------------------EEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceee---
Confidence            99999999964 55554                   36899999999999999999999999999999998764332   


Q ss_pred             eeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEE
Q 001295          451 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW  530 (1106)
Q Consensus       451 ~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw  530 (1106)
                       ...+|...|.++.|+|++.  .+++++.++.+++|+. ..........|...|.++.+++  ++.+|++++.|+.|++|
T Consensus       134 -~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~~w  207 (577)
T 2ymu_A          134 -TLTGHSSSVWGVAFSPDGQ--TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP--DGQTIASASDDKTVKLW  207 (577)
T ss_dssp             -EECCCSSCEEEEEECTTSS--CEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECT--TSSCEEEEETTSEEEEE
T ss_pred             -eccCCCCceeeeeeecCCc--cceecccccceecccc-ceeeeeeccCCCcceeeeeecC--CCCEEEEEcCCCEEEEE
Confidence             4678999999999999999  7899999999999994 5556777788999999999765  45789999999999999


Q ss_pred             eCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCC
Q 001295          531 LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL  610 (1106)
Q Consensus       531 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  610 (1106)
                      |.. .+....+..+...|.+++|+|+++                     ++++++.|+.|++||. +++.+..+..+  .
T Consensus       208 ~~~-~~~~~~~~~~~~~v~~~~~s~dg~---------------------~l~~~~~d~~i~~w~~-~~~~~~~~~~~--~  262 (577)
T 2ymu_A          208 NRN-GQLLQTLTGHSSSVRGVAFSPDGQ---------------------TIASASDDKTVKLWNR-NGQLLQTLTGH--S  262 (577)
T ss_dssp             CTT-SCEEEEEECCSSCEEEEEECTTSS---------------------CEEEEETTSCEEEECT-TSCEEEEECCC--S
T ss_pred             eCC-CcEEEEEecCCCCEEEEEECCCCC---------------------EEEEEeCCCEEEEEeC-CCCEEEEEecC--C
Confidence            964 455556666766676666666655                     7999999999999996 56777777766  4


Q ss_pred             CCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccc
Q 001295          611 PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASM  690 (1106)
Q Consensus       611 ~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  690 (1106)
                      ..|.+++|+|+++++++++.|+.|++|+...  +....+.+|...+.                                 
T Consensus       263 ~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~--~~~~~~~~h~~~v~---------------------------------  307 (577)
T 2ymu_A          263 SSVNGVAFRPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVW---------------------------------  307 (577)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTS--CEEEEECCCSSCEE---------------------------------
T ss_pred             CCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC--cEEEEEecCCCCeE---------------------------------
Confidence            5799999999999999999999999999643  34445555544322                                 


Q ss_pred             cccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEe
Q 001295          691 VSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLW  770 (1106)
Q Consensus       691 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw  770 (1106)
                              ...+.+++..+++++.|+.+++|+....    ....+    .+|...|.+++|+|+++.+++++.|+.+++|
T Consensus       308 --------~~~~~~~~~~l~t~~~d~~i~~w~~~~~----~~~~~----~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~  371 (577)
T 2ymu_A          308 --------GVAFSPDGQTIASASDDKTVKLWNRNGQ----HLQTL----TGHSSSVWGVAFSPDGQTIASASDDKTVKLW  371 (577)
T ss_dssp             --------EEEECTTSSEEEEEETTSCEEEEETTSC----EEEEE----CCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             --------EEEECCCCCEEEEEeCCCeEEEEeCCCC----eeEEE----eCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence                    1234567889999999999999997642    22222    3478899999999999999999999999999


Q ss_pred             eccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecC
Q 001295          771 KWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP  849 (1106)
Q Consensus       771 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~  849 (1106)
                      +...                       ..+.. +.  .|...|.+++|+|++++|++++ |+.|++||. +++.+..+.+
T Consensus       372 ~~~~-----------------------~~~~~-~~--~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~  424 (577)
T 2ymu_A          372 NRNG-----------------------QLLQT-LT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG  424 (577)
T ss_dssp             ETTC-----------------------CEEEE-EE--CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEEC
T ss_pred             cCCC-----------------------CEEEE-ec--CCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecC
Confidence            8531                       11111 22  2888999999999999999998 899999995 5678888999


Q ss_pred             CCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccc
Q 001295          850 PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQ  929 (1106)
Q Consensus       850 ~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~  929 (1106)
                      |...|++++|+| ++++|++++.|+.|++||. +++.+..+.+|...|++++|+||+++|++++.|++|++||... +  
T Consensus       425 ~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~-~--  499 (577)
T 2ymu_A          425 HSSSVWGVAFSP-DDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-Q--  499 (577)
T ss_dssp             CSSCEEEEEECT-TSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS-C--
T ss_pred             CCCCeEEEEECC-CCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC-C--
Confidence            999999999999 8999999999999999996 5778889999999999999999999999999999999999643 2  


Q ss_pred             cceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcC
Q 001295          930 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD 1008 (1106)
Q Consensus       930 ~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~D 1008 (1106)
                         .+....+|.   ..|.+++|+|||++|++ +.|+.|++||. +++++..+.  +|...|++++|+|||++|++++.|
T Consensus       500 ---~~~~~~~h~---~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~--~h~~~v~~~~fs~dg~~l~s~~~D  570 (577)
T 2ymu_A          500 ---LLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT--GHSSSVWGVAFSPDGQTIASASSD  570 (577)
T ss_dssp             ---EEEEEECCS---SCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE--CCSSCEEEEEECTTSSCEEEEETT
T ss_pred             ---EEEEEeCCC---CCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc--CCCCCEEEEEEcCCCCEEEEEeCC
Confidence               344455555   37999999999999999 58899999996 577777776  899999999999999999999999


Q ss_pred             CeEEEEE
Q 001295         1009 ATVCVFS 1015 (1106)
Q Consensus      1009 g~i~vwd 1015 (1106)
                      ++|++||
T Consensus       571 ~~i~~Wd  577 (577)
T 2ymu_A          571 KTVKLWN  577 (577)
T ss_dssp             SCEEEEC
T ss_pred             CEEEEeC
Confidence            9999997

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=3.5e-61  Score=581.30  Aligned_cols=537  Identities=15%  Similarity=0.196  Sum_probs=426.0

Q ss_pred             eccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCC
Q 001295          346 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  425 (1106)
Q Consensus       346 ~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~  425 (1106)
                      ..+|.+.|++++|||||++ ||+|+.||+|+|||+.+++.....                 .+.+|.+.|.+++|+|||+
T Consensus        55 ~~~h~~~v~~~~~spdg~~-lasg~~d~~v~lWd~~~~~~~~~~-----------------~~~~~~~~v~~v~fs~dg~  116 (611)
T 1nr0_A           55 YTEHSHQTTVAKTSPSGYY-CASGDVHGNVRIWDTTQTTHILKT-----------------TIPVFSGPVKDISWDSESK  116 (611)
T ss_dssp             ECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEESSSTTCCEEE-----------------EEECSSSCEEEEEECTTSC
T ss_pred             ecCCCCceEEEEECCCCcE-EEEEeCCCCEEEeECCCCcceeeE-----------------eecccCCceEEEEECCCCC
Confidence            3469999999999999995 999999999999999766543211                 2578999999999999999


Q ss_pred             EEEEEeCC----CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccC
Q 001295          426 LFGVAYSR----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE  501 (1106)
Q Consensus       426 ~las~~~d----~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~  501 (1106)
                      +||+++.+    +.|++||  +++...   .+.+|...|.+++|+|++.. .|++|+.|++|++||..+++++..+.+|.
T Consensus       117 ~l~~~~~~~~~~~~v~~wd--~~~~~~---~l~gh~~~v~~v~f~p~~~~-~l~s~s~D~~v~lwd~~~~~~~~~l~~H~  190 (611)
T 1nr0_A          117 RIAAVGEGRERFGHVFLFD--TGTSNG---NLTGQARAMNSVDFKPSRPF-RIISGSDDNTVAIFEGPPFKFKSTFGEHT  190 (611)
T ss_dssp             EEEEEECCSSCSEEEEETT--TCCBCB---CCCCCSSCEEEEEECSSSSC-EEEEEETTSCEEEEETTTBEEEEEECCCS
T ss_pred             EEEEEECCCCceeEEEEee--CCCCcc---eecCCCCCceEEEECCCCCe-EEEEEeCCCeEEEEECCCCeEeeeecccc
Confidence            99998865    4677777  444443   58899999999999999874 59999999999999999999999999999


Q ss_pred             CCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEee-------CCCCeeEEEEEecCCCeEEEeeeccceeEEEE
Q 001295          502 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-------APGRWCTTMAYSADGTRTYQGFRKRSLGVVQF  574 (1106)
Q Consensus       502 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~  574 (1106)
                      ..|.+++|++  ++.+|++++.|++|++||+.+++....+.       .|...|.+++|+|++                 
T Consensus       191 ~~V~~v~fsp--dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg-----------------  251 (611)
T 1nr0_A          191 KFVHSVRYNP--DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG-----------------  251 (611)
T ss_dssp             SCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS-----------------
T ss_pred             CceEEEEECC--CCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCC-----------------
Confidence            9999999876  45799999999999999998877665553       455555555555554                 


Q ss_pred             cCCCCEEEEEECCCeEEEEECCCcceeEEEccCCC-CCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccc
Q 001295          575 DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG-LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA  653 (1106)
Q Consensus       575 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  653 (1106)
                          ++|++++.|++|++||+.+++.+..+..+.. ...+..+.|  ++..+++++.|+.+++|+..++ .....+.+|.
T Consensus       252 ----~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~-~~~~~~~gh~  324 (611)
T 1nr0_A          252 ----TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPELG-SIDQVRYGHN  324 (611)
T ss_dssp             ----SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETTTT-EEEEEECCCS
T ss_pred             ----CEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCCCcEEEEeCCCC-CcceEEcCCC
Confidence                5899999999999999999999888864321 112334555  7889999999999999998877 4555556665


Q ss_pred             cccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccce
Q 001295          654 YDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCR  733 (1106)
Q Consensus       654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~  733 (1106)
                      ..+.                                         ...+.+++..+++++.|++|++||+.......   
T Consensus       325 ~~v~-----------------------------------------~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~---  360 (611)
T 1nr0_A          325 KAIT-----------------------------------------ALSSSADGKTLFSADAEGHINSWDISTGISNR---  360 (611)
T ss_dssp             SCEE-----------------------------------------EEEECTTSSEEEEEETTSCEEEEETTTCCEEE---
T ss_pred             CCEE-----------------------------------------EEEEeCCCCEEEEEeCCCcEEEEECCCCceee---
Confidence            5433                                         22345678999999999999999998643211   


Q ss_pred             ecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCe
Q 001295          734 SLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAV  813 (1106)
Q Consensus       734 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v  813 (1106)
                         ....+|...|.+++|++++ .+++++.|+.+++|+.........                 .....     ......
T Consensus       361 ---~~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~-----------------~~~~~-----~~~~~~  414 (611)
T 1nr0_A          361 ---VFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSS-----------------KAVAN-----KLSSQP  414 (611)
T ss_dssp             ---CSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTT-----------------SCCEE-----ECSSCE
T ss_pred             ---ecccCCcceEEEEEECCCC-cEEEEEcCCceEEeecCCcccccc-----------------ceeee-----ecCCCC
Confidence               1113588899999999876 588999999999998764221100                 00000     023456


Q ss_pred             eEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceE--EEEec
Q 001295          814 PCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV--KSKLK  891 (1106)
Q Consensus       814 ~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~--~~~l~  891 (1106)
                      .+++++|+++.++++.++.+++|+  .++ +..+. |...+.+++|+| |+++||+|+.|++|++||+.+++.  +.. .
T Consensus       415 ~~~~~s~dg~~~~~~~~~~v~~~~--~~~-~~~~~-~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~~~~~~-~  488 (611)
T 1nr0_A          415 LGLAVSADGDIAVAACYKHIAIYS--HGK-LTEVP-ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKT-I  488 (611)
T ss_dssp             EEEEECTTSSCEEEEESSEEEEEE--TTE-EEEEE-CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEE-E
T ss_pred             cEEEEeCCCcEEEEEeCceEEEEe--CCc-eeeee-cCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCceeeeec-c
Confidence            789999999999888899999998  333 45554 778899999999 999999999999999999988654  334 6


Q ss_pred             CcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCC-cccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEE
Q 001295          892 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG-WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAI  969 (1106)
Q Consensus       892 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i  969 (1106)
                      +|...|++|+|+|||++|++++.|++|++|++.+ ++....   ....+|.   ..|.+++|+|||++|++ +.|+.|++
T Consensus       489 ~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~---~~~~~H~---~~V~~v~fspdg~~lasgs~D~~v~l  562 (611)
T 1nr0_A          489 VHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHT---NSWTFHT---AKVACVSWSPDNVRLATGSLDNSVIV  562 (611)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCC---CCCCCCS---SCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             CCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeee---eeeeecc---cceeEEEECCCCCEEEEEECCCcEEE
Confidence            7999999999999999999999999999999987 332110   0122244   48999999999999999 58999999


Q ss_pred             EecCCceE-e-eecccCCC-CCCeeEEEECCCCCEEEEEEcCCeEEEEEcC
Q 001295          970 FETTKLEC-V-KQWVPRES-SAPITHATFSCDSQLVYACFLDATVCVFSAA 1017 (1106)
Q Consensus       970 ~d~~~~~~-~-~~~~~~~h-~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~ 1017 (1106)
                      ||+.++.. . ..+  .+| ...|++++|+||++ |++++.|++|++|++.
T Consensus       563 W~~~~~~~~~~~~~--~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~  610 (611)
T 1nr0_A          563 WNMNKPSDHPIIIK--GAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP  610 (611)
T ss_dssp             EETTCTTSCCEEET--TSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred             EECCCcccccchhh--ccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence            99988653 2 333  378 89999999999998 9999999999999973

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=3e-61  Score=635.95  Aligned_cols=595  Identities=15%  Similarity=0.167  Sum_probs=488.8

Q ss_pred             eccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCC
Q 001295          346 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  425 (1106)
Q Consensus       346 ~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~  425 (1106)
                      ..+|.+.|++++|||+|++ +|+|+.||+|+|||+.+++.+..                   +.+|.+.|.+++|+|||+
T Consensus       611 ~~~h~~~v~~~~~s~~~~~-l~s~~~d~~i~vw~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~~~  670 (1249)
T 3sfz_A          611 VRPHTDAVYHACFSQDGQR-IASCGADKTLQVFKAETGEKLLD-------------------IKAHEDEVLCCAFSSDDS  670 (1249)
T ss_dssp             ECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECTTSS
T ss_pred             EecccccEEEEEECCCCCE-EEEEeCCCeEEEEECCCCCEEEE-------------------eccCCCCEEEEEEecCCC
Confidence            4459999999999999995 99999999999999999987763                   689999999999999999


Q ss_pred             EEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeE
Q 001295          426 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY  505 (1106)
Q Consensus       426 ~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~  505 (1106)
                      +||+++.|++|+|||+.+++.+.   .+.+|...|.+++|+|++...++++|+.|+.|++||+.+++++..+.+|...|.
T Consensus       671 ~l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~  747 (1249)
T 3sfz_A          671 YIATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVN  747 (1249)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEE
T ss_pred             EEEEEeCCCeEEEEECCCCceEE---EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEE
Confidence            99999999999999999988765   678999999999999975554899999999999999999999999999999999


Q ss_pred             EEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCC-------------CCeeEEEEEecCCCeEEEe---------
Q 001295          506 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP-------------GRWCTTMAYSADGTRTYQG---------  563 (1106)
Q Consensus       506 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~v~~~~~s~~~~~~~~~---------  563 (1106)
                      +++|+++  +.++++++.||.|++||+.+......+...             ...+.+++|+|+|+.++.+         
T Consensus       748 ~~~~sp~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d  825 (1249)
T 3sfz_A          748 HCRFSPD--DELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFD  825 (1249)
T ss_dssp             EEEECSS--TTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEE
T ss_pred             EEEEecC--CCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEE
Confidence            9998764  479999999999999999887665544321             2367788899998865543         


Q ss_pred             ------------eeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCC
Q 001295          564 ------------FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND  631 (1106)
Q Consensus       564 ------------~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d  631 (1106)
                                  .+...+..++|+|++.++++++.|+.|++||+.++..+..+.+|  ...|.+++|+|+++++++++.|
T Consensus       826 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h--~~~v~~v~~spdg~~l~s~s~d  903 (1249)
T 3sfz_A          826 IHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGH--LSWVHGVMFSPDGSSFLTASDD  903 (1249)
T ss_dssp             TTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSEEEEEETT
T ss_pred             ecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCC--ccceEEEEECCCCCEEEEEeCC
Confidence                        23457888999999999999999999999999999999988866  4589999999999999999999


Q ss_pred             CcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCcccc
Q 001295          632 NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRIT  711 (1106)
Q Consensus       632 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  711 (1106)
                      |.|++|++.+.... ........                                           ......+....++.
T Consensus       904 g~v~vw~~~~~~~~-~~~~~~~~-------------------------------------------~~~~~~~~~~~~~~  939 (1249)
T 3sfz_A          904 QTIRVWETKKVCKN-SAIVLKQE-------------------------------------------IDVVFQENETMVLA  939 (1249)
T ss_dssp             SCEEEEEHHHHHSC-CSSSEEEE-------------------------------------------EEEEEETTEEEEEE
T ss_pred             CeEEEEEcccccee-eeecccce-------------------------------------------eeEEEcCCCcEEEE
Confidence            99999998643111 10000000                                           00011122333444


Q ss_pred             ccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccc
Q 001295          712 EESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQL  791 (1106)
Q Consensus       712 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~  791 (1106)
                      ....+.+.+|......    ..      ......+.+++|+|+++++++++.+|.+++|++..                 
T Consensus       940 ~~~~~~~~~~~~~~~~----~~------~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~-----------------  992 (1249)
T 3sfz_A          940 VDNIRGLQLIAGKTGQ----ID------YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN-----------------  992 (1249)
T ss_dssp             EESSSSEEEEEESSCC----EE------EECCSCEEEEEECTTSSEEEEEETTSCCEEEETTT-----------------
T ss_pred             ecCCcceEEEecCcce----EE------EcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCC-----------------
Confidence            5555566666554321    11      11456799999999999999999999999998763                 


Q ss_pred             cCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEe
Q 001295          792 WQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIG  870 (1106)
Q Consensus       792 w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g  870 (1106)
                           +..... +.  +|...|++++|+|++++|++++ ||.|++||+.+++... +..|...|.+++|+| ++ .++++
T Consensus       993 -----~~~~~~-~~--~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~-~~-~l~~~ 1061 (1249)
T 3sfz_A          993 -----NRVFSS-GV--GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQ-DS-RLLSW 1061 (1249)
T ss_dssp             -----TSCEEE-CC--CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECS-SS-EEEEE
T ss_pred             -----Cceeee-cc--cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcC-CC-cEEEE
Confidence                 222211 22  3889999999999999999998 8999999999987764 557899999999999 65 56788


Q ss_pred             eCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceE
Q 001295          871 MDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRV  950 (1106)
Q Consensus       871 ~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~  950 (1106)
                      +.||.|++||+.+++.+..+.+|.+.|++++|+||+++|++++.|++|++||+.+++.     +....+|.   ..|.++
T Consensus      1062 ~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~-----~~~l~~h~---~~v~~~ 1133 (1249)
T 3sfz_A         1062 SFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP-----LHELKGHN---GCVRCS 1133 (1249)
T ss_dssp             ESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSC-----SBCCCCCS---SCEEEE
T ss_pred             ECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcce-----eeeeccCC---CcEEEE
Confidence            9999999999999999999999999999999999999999999999999999988653     34444554   478999


Q ss_pred             EEcCCCcEEEE-EeCCeEEEEecCCceEeeecc-------cCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeE
Q 001295          951 QFHQDQIHFLV-VHETQLAIFETTKLECVKQWV-------PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR 1022 (1106)
Q Consensus       951 ~~s~dg~~l~~-~~d~~v~i~d~~~~~~~~~~~-------~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~ 1022 (1106)
                      +|+|||++|++ +.|+.|++||+.+++++..+.       ..+|...|++++|+|||++|++++  |+|++||+.+++.+
T Consensus      1134 ~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~ 1211 (1249)
T 3sfz_A         1134 AFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSS 1211 (1249)
T ss_dssp             EECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBCC
T ss_pred             EECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCCCcee
Confidence            99999999999 578999999999998877651       136889999999999999999885  99999999999887


Q ss_pred             EeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeec
Q 001295         1023 CRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1070 (1106)
Q Consensus      1023 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~ 1070 (1106)
                      ..+.       +| ...+.  .++|+| |+++|++++.||.|++|++.
T Consensus      1212 ~~~~-------~~-~~~i~--~~~~s~-dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A         1212 QTFY-------TN-GTNLK--KIHVSP-DFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp             CCCC-------CS-SCCCC--CCEECS-SSCCEEEECTTCCEEEECCC
T ss_pred             eeee-------cc-CCccc--EEEECC-CCCEEEEecCCcEEEEEeec
Confidence            6654       22 22255  789999 78999999999999999985

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.3e-58  Score=564.19  Aligned_cols=560  Identities=12%  Similarity=0.151  Sum_probs=457.5

Q ss_pred             cCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCc----ceeEEeeeeeeccCcCCccccccccCCCCcC-eEEEEEcc
Q 001295          348 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR----ERLVLRNFKVWDLGACSMPLQAALVKDPGVS-VNRVIWSP  422 (1106)
Q Consensus       348 ~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~----~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~-V~~l~~sp  422 (1106)
                      .|...|++++|||+|++ ||+|+ ++.|+|||+.++    +...                   .+.+|... |.+++|+|
T Consensus        16 ~~~~~v~~~~~spdg~~-l~~~~-~~~v~v~~~~~~~~~~~~~~-------------------~~~~h~~~~v~~~~~sp   74 (615)
T 1pgu_A           16 TQRNFTTHLSYDPTTNA-IAYPC-GKSAFVRCLDDGDSKVPPVV-------------------QFTGHGSSVVTTVKFSP   74 (615)
T ss_dssp             CCTTCCCCCEEETTTTE-EEEEE-TTEEEEEECCSSCCSSCSEE-------------------EECTTTTSCEEEEEECS
T ss_pred             CccCceeEEEECCCCCE-EEEec-CCeEEEEECCCCCCccccce-------------------EEecCCCceEEEEEECc
Confidence            48899999999999995 77777 789999999987    5554                   37899999 99999999


Q ss_pred             --CCCEEEEEeCCCeEEEEEccCCc-----eeeeeeeeccccCCeeEEEEcCCCCceEEEEecCC----CcEEEEeCCCC
Q 001295          423 --DGSLFGVAYSRHIVQIYSYHGGD-----EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD----KTIKVWDATNG  491 (1106)
Q Consensus       423 --dg~~las~~~d~~v~iwd~~~~~-----~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d----~~i~iwd~~~~  491 (1106)
                        ++++||+++.||.|+|||+.+++     .......+.+|...|.+++|+|+++  ++++++.+    +.|++||  ++
T Consensus        75 ~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d--~~  150 (615)
T 1pgu_A           75 IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD--SG  150 (615)
T ss_dssp             STTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT--TC
T ss_pred             CCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEE--CC
Confidence              99999999999999999997651     1223346778999999999999999  78888877    6888887  67


Q ss_pred             ceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCC---eeEEEEEecC-CCeEEEeeecc
Q 001295          492 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGR---WCTTMAYSAD-GTRTYQGFRKR  567 (1106)
Q Consensus       492 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~s~~-~~~~~~~~~~~  567 (1106)
                      +.+..+.+|...|.+++|+++.. .++++++.|+.|++||+.+.+....+..+..   .|.+++|+|+ +          
T Consensus       151 ~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----------  219 (615)
T 1pgu_A          151 NSLGEVSGHSQRINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSG----------  219 (615)
T ss_dssp             CEEEECCSCSSCEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTC----------
T ss_pred             CcceeeecCCccEEEEEECCCCC-cEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCC----------
Confidence            78899999999999999976542 3899999999999999988777777777766   6666666665 5          


Q ss_pred             ceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEE-c---cCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCc
Q 001295          568 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI-D---ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI  643 (1106)
Q Consensus       568 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~---~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~  643 (1106)
                                 +++++++.|+.|++||+.+++.+..+ .   .+  ...|.+++|+ ++++|++++.||.|++||+.++ 
T Consensus       220 -----------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~--~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~-  284 (615)
T 1pgu_A          220 -----------EFVITVGSDRKISCFDGKSGEFLKYIEDDQEPV--QGGIFALSWL-DSQKFATVGADATIRVWDVTTS-  284 (615)
T ss_dssp             -----------CEEEEEETTCCEEEEETTTCCEEEECCBTTBCC--CSCEEEEEES-SSSEEEEEETTSEEEEEETTTT-
T ss_pred             -----------CEEEEEeCCCeEEEEECCCCCEeEEeccccccc--CCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC-
Confidence                       47999999999999999999999888 3   44  4579999999 9999999999999999999887 


Q ss_pred             hhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEec
Q 001295          644 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL  723 (1106)
Q Consensus       644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~  723 (1106)
                      +....+..+......                                      .......+++..+++++.++.+++|++
T Consensus       285 ~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~l~~~~~~g~i~~~d~  326 (615)
T 1pgu_A          285 KCVQKWTLDKQQLGN--------------------------------------QQVGVVATGNGRIISLSLDGTLNFYEL  326 (615)
T ss_dssp             EEEEEEECCTTCGGG--------------------------------------CEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             cEEEEEcCCCCcccC--------------------------------------ceeEEEeCCCCeEEEEECCCCEEEEEC
Confidence            444444333110000                                      000011126788999999999999998


Q ss_pred             CCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccc
Q 001295          724 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND  803 (1106)
Q Consensus       724 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  803 (1106)
                      .....   ...+    .+|...|.+++| |+   +++++.||.|++|++.                         .    
T Consensus       327 ~~~~~---~~~~----~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~-------------------------~----  366 (615)
T 1pgu_A          327 GHDEV---LKTI----SGHNKGITALTV-NP---LISGSYDGRIMEWSSS-------------------------S----  366 (615)
T ss_dssp             TEEEE---EEEE----CCCSSCEEEEET-TT---TEEEETTSCEEETTTT-------------------------E----
T ss_pred             CCCcE---EEEE----eCCCCCEEEEEe-cC---cEEECCCCeEEEEEch-------------------------h----
Confidence            75221   1111    348899999999 88   9999999999999764                         0    


Q ss_pred             cCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEee
Q 001295          804 VTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR  882 (1106)
Q Consensus       804 ~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~  882 (1106)
                      +. ..|...|.+++| +++..+++++ |+.|++||+.+++...       .+.+++|+| ++.+++++ .++.+++|++.
T Consensus       367 ~~-~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~-------~~~~~~~s~-~~~~~~~~-~~~~~~~~~~~  435 (615)
T 1pgu_A          367 MH-QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGS-------QPKVASANN-DGFTAVLT-NDDDLLILQSF  435 (615)
T ss_dssp             EE-CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSS-------CEEEEEECS-SSEEEEEE-TTSEEEEEETT
T ss_pred             hc-CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccC-------CceEEEEcC-CCCEEEEe-CCCceEEEecc
Confidence            01 238899999999 6677778777 9999999988765433       688999999 88888877 78999999999


Q ss_pred             cceEEEEecCcccCeeEEEEecCCCEEEEEcC-CCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE
Q 001295          883 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV  961 (1106)
Q Consensus       883 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~  961 (1106)
                      +++.+..+. |...+++++|+  +++|++++. |+.|++||+.+++...    ....+|.   ..|.+++|+|+|++|++
T Consensus       436 ~~~~~~~~~-~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~----~~~~~~~---~~v~~~~~s~~g~~l~~  505 (615)
T 1pgu_A          436 TGDIIKSVR-LNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSF----DLKTPLR---AKPSYISISPSETYIAA  505 (615)
T ss_dssp             TCCEEEEEE-CSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEE----ECSSCCS---SCEEEEEECTTSSEEEE
T ss_pred             CCceeeecc-cCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccc----cccCCcc---CceEEEEECCCCCEEEE
Confidence            999888887 88999999999  889999999 9999999998854311    3333443   48899999999999999


Q ss_pred             -EeCCeEEEEecCCceEeeecccCC-CCCCeeEEEECC----------CCCEEEEEEcCCeEEEEEcCCc-eeEEeeCCC
Q 001295          962 -VHETQLAIFETTKLECVKQWVPRE-SSAPITHATFSC----------DSQLVYACFLDATVCVFSAANL-KLRCRINPS 1028 (1106)
Q Consensus       962 -~~d~~v~i~d~~~~~~~~~~~~~~-h~~~v~~l~~s~----------d~~~l~t~s~Dg~i~vwd~~~~-~~~~~~~~~ 1028 (1106)
                       +.|+.|++||+.+++.+..+.  + |...|++++|+|          ++++|++++.||+|++||+.++ +.+..+.  
T Consensus       506 ~~~dg~i~iw~~~~~~~~~~~~--~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--  581 (615)
T 1pgu_A          506 GDVMGKILLYDLQSREVKTSRW--AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN--  581 (615)
T ss_dssp             EETTSCEEEEETTTTEEEECCS--CCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETT--
T ss_pred             cCCCCeEEEeeCCCCcceeEee--cCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhh--
Confidence             488999999999999988765  5 899999999999          9999999999999999999998 6666654  


Q ss_pred             cccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecC
Q 001295         1029 AYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1071 (1106)
Q Consensus      1029 ~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~ 1071 (1106)
                           +| ...|.  .++|+| |++ |++++.||.|++|++++
T Consensus       582 -----~h-~~~v~--~l~~s~-~~~-l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          582 -----AH-KDGVN--NLLWET-PST-LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             -----SS-TTCEE--EEEEEE-TTE-EEEEETTSCEEEEEEC-
T ss_pred             -----cC-ccceE--EEEEcC-CCC-eEEecCCceEEEEeeec
Confidence                 33 33366  899999 677 99999999999999976

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=4.8e-57  Score=595.85  Aligned_cols=568  Identities=17%  Similarity=0.217  Sum_probs=465.4

Q ss_pred             ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEE
Q 001295          407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  486 (1106)
Q Consensus       407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw  486 (1106)
                      .+.+|.+.|++++|||||++||+|+.||+|+|||+.+++.+.   .+.+|.+.|.+++|+|+++  ++++|+.|++|+||
T Consensus       610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~v~vw  684 (1249)
T 3sfz_A          610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDS--YIATCSADKKVKIW  684 (1249)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred             EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE---EeccCCCCEEEEEEecCCC--EEEEEeCCCeEEEE
Confidence            478999999999999999999999999999999999988665   6789999999999999999  89999999999999


Q ss_pred             eCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeec
Q 001295          487 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  566 (1106)
Q Consensus       487 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  566 (1106)
                      |+.+++.+..+.+|...|.+++|++..++.++++|+.||.|++||++++.....+..|...|.+++|+|+++        
T Consensus       685 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~--------  756 (1249)
T 3sfz_A          685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE--------  756 (1249)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTT--------
T ss_pred             ECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCC--------
Confidence            999999999999999999999998877778999999999999999999888888888877777777776665        


Q ss_pred             cceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCC-----------CCCCcCeEEEccCCCEEEEEeCCCcEE
Q 001295          567 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG-----------GLPASPRIRFNKDGCLLAVSTNDNGIK  635 (1106)
Q Consensus       567 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~v~~s~~~~~l~~~~~dg~i~  635 (1106)
                                   ++++++.||.|++||+.+++....+....           ....+.+++|+|+|+++++++ ++.+.
T Consensus       757 -------------~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~  822 (1249)
T 3sfz_A          757 -------------LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVL  822 (1249)
T ss_dssp             -------------EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEE
T ss_pred             -------------EEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEE
Confidence                         79999999999999999988777664321           123688999999999999988 58999


Q ss_pred             EEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCC
Q 001295          636 ILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESN  715 (1106)
Q Consensus       636 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  715 (1106)
                      +||..++........+|...+                                         ....+.+++..+++++.+
T Consensus       823 ~~d~~~~~~~~~~~~~~~~~v-----------------------------------------~~~~~sp~~~~l~~~~~d  861 (1249)
T 3sfz_A          823 LFDIHTSGLLAEIHTGHHSTI-----------------------------------------QYCDFSPYDHLAVIALSQ  861 (1249)
T ss_dssp             EEETTTCCEEEEEECSSSSCC-----------------------------------------CEEEECSSTTEEEEECSS
T ss_pred             EEEecCCCceeEEcCCCCCce-----------------------------------------EEEEEcCCCCEEEEEeCC
Confidence            999988733222222332221                                         123345678899999999


Q ss_pred             CceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCcc------------
Q 001295          716 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKA------------  783 (1106)
Q Consensus       716 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~------------  783 (1106)
                      +.+++|++........     +  .+|...|.+++|+|+++.+++++.||.+++|++...........            
T Consensus       862 g~v~vwd~~~~~~~~~-----~--~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~  934 (1249)
T 3sfz_A          862 YCVELWNIDSRLKVAD-----C--RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENE  934 (1249)
T ss_dssp             SCEEEEETTTTEEEEE-----E--CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTE
T ss_pred             CeEEEEEcCCCceeee-----c--CCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCC
Confidence            9999999986322111     1  35889999999999999999999999999999865321110000            


Q ss_pred             --c----cccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeE
Q 001295          784 --T----ASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATF  856 (1106)
Q Consensus       784 --~----~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~  856 (1106)
                        .    ....+.++...++.....      +...+.+++++|+++++++|+ +|.|++||+.+++....+.+|...|++
T Consensus       935 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~ 1008 (1249)
T 3sfz_A          935 TMVLAVDNIRGLQLIAGKTGQIDYL------PEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRH 1008 (1249)
T ss_dssp             EEEEEEESSSSEEEEEESSCCEEEE------CCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCC
T ss_pred             cEEEEecCCcceEEEecCcceEEEc------ccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEE
Confidence              0    001122333333333221      466799999999999999999 899999999999999999999999999


Q ss_pred             EEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecc
Q 001295          857 LAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQI  936 (1106)
Q Consensus       857 l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~  936 (1106)
                      ++|+| ++++|++++.||.|++||+.+++.. .+.+|...|.+++|++++ .+++++.|++|++||+.+++..     ..
T Consensus      1009 l~~s~-dg~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~-----~~ 1080 (1249)
T 3sfz_A         1009 IQFTA-DGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIE-----RD 1080 (1249)
T ss_dssp             EEECS-SSSCEEEECSSSBEEEEETTTTEEE-CCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCCC-----EE
T ss_pred             EEECC-CCCEEEEEcCCCEEEEEECCCCceE-EEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCcee-----EE
Confidence            99999 8999999999999999999998876 456899999999999975 6788999999999999987642     23


Q ss_pred             cCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEE
Q 001295          937 PTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1015 (1106)
Q Consensus       937 ~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd 1015 (1106)
                      ..+|.   ..|.+++|+||++++++ +.|+.|++||+.+++++..+.  +|...|++++|+|||++|++|+.||+|++||
T Consensus      1081 ~~~~~---~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~--~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd 1155 (1249)
T 3sfz_A         1081 FTCHQ---GTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELK--GHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1155 (1249)
T ss_dssp             EECCS---SCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCC--CCSSCEEEEEECSSSSEEEEEETTSCCCEEE
T ss_pred             EcccC---CcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeec--cCCCcEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence            33444   37899999999999999 588999999999999888776  8899999999999999999999999999999


Q ss_pred             cCCceeEEeeCCCccc--CCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCCC
Q 001295         1016 AANLKLRCRINPSAYL--PAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEG 1074 (1106)
Q Consensus      1016 ~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~~ 1074 (1106)
                      +.+++.+..+......  ..+| ...+.  .++|+| |+.+|++++  |.|++||+.+++.
T Consensus      1156 ~~~~~~~~~~~~~~~~~~~~~~-~~~v~--~l~fs~-dg~~l~s~~--g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A         1156 VSDGQLLHSCAPISVEEGTATH-GGWVT--DVCFSP-DSKTLVSAG--GYLKWWNVATGDS 1210 (1249)
T ss_dssp             SSSSCCCCCCCCCC-------C-CSCCC--EEEECT-TSSCEEEES--SSEEEBCSSSCBC
T ss_pred             CCCCceEEEecccccccccccc-CceEE--EEEECC-CCCEEEECC--CeEEEEECCCCce
Confidence            9999887765321111  1122 33366  899999 789999885  9999999999883

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.7e-56  Score=555.52  Aligned_cols=628  Identities=10%  Similarity=0.083  Sum_probs=434.5

Q ss_pred             eeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc
Q 001295          343 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  422 (1106)
Q Consensus       343 ~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp  422 (1106)
                      .....+|.+.|++++|+|+|+ +||+|+.||+|+|||..+.+....                    ..|...|.+++|+|
T Consensus        10 ~~~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~~--------------------~~~~~~V~~l~fsp   68 (902)
T 2oaj_A           10 ETNKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVIK--------------------LEDRSAIKEMRFVK   68 (902)
T ss_dssp             EEEEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEEE--------------------CSSCCCEEEEEEET
T ss_pred             cccccCCCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEEE--------------------cCCCCCEEEEEEcC
Confidence            344567999999999999999 599999999999999987665432                    35788999999999


Q ss_pred             CCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCcee--------
Q 001295          423 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ--------  494 (1106)
Q Consensus       423 dg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~--------  494 (1106)
                       |++|++++.|++|+|||+.+++.+.   .+. |.+.|++++|+|+++  ++++|+.||+|++||+.++++.        
T Consensus        69 -g~~L~S~s~D~~v~lWd~~~~~~~~---~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~  141 (902)
T 2oaj_A           69 -GIYLVVINAKDTVYVLSLYSQKVLT---TVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQ  141 (902)
T ss_dssp             -TTEEEEEETTCEEEEEETTTCSEEE---EEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHH
T ss_pred             -CCEEEEEECcCeEEEEECCCCcEEE---EEc-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccccceecccc
Confidence             8899999999999999999988765   343 678999999999999  8999999999999999988764        


Q ss_pred             ---EEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCC--eEEEeeeccce
Q 001295          495 ---YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT--RTYQGFRKRSL  569 (1106)
Q Consensus       495 ---~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~--~~~~~~~~~~i  569 (1106)
                         ..+.+|.+.|.+++|++.. +..+++|+.||.| +||+++......+..+...-     .+.+.  .....++...+
T Consensus       142 ~~~~~~~~h~~~V~sl~~sp~~-~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g-----~~~~~~~~~~~~~h~~~V  214 (902)
T 2oaj_A          142 KSSFFPAARLSPIVSIQWNPRD-IGTVLISYEYVTL-TYSLVENEIKQSFIYELPPF-----APGGDFSEKTNEKRTPKV  214 (902)
T ss_dssp             HHHTCSSSCCCCCCEEEEETTE-EEEEEEECSSCEE-EEETTTTEEEEEECCCBCTT-----CCCSTTCCCTTSCBCCCE
T ss_pred             ccccccccCCCCeEEEEEccCC-CCEEEEEeCCCcE-EEECCCCceEEEEecccCCc-----CCCcccccccccccCCCe
Confidence               2346799999999998742 3689999999999 99999877666555431000     00000  00001122357


Q ss_pred             eEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEc-----cCC-----------CCCCcCeEEEc----cCC-CEEEEE
Q 001295          570 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID-----ADG-----------GLPASPRIRFN----KDG-CLLAVS  628 (1106)
Q Consensus       570 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----~~~-----------~~~~v~~v~~s----~~~-~~l~~~  628 (1106)
                      .+++|+|++.+|++++.|+.|++||+.+++++....     .+.           +...|.+++|+    |++ .++++|
T Consensus       215 ~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg  294 (902)
T 2oaj_A          215 IQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISH  294 (902)
T ss_dssp             EEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeC
Confidence            777788888899999999999999999998876421     121           23368899995    443 567788


Q ss_pred             eCC-----CcEEEEEccC-Cc------hhh-hhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCC
Q 001295          629 TND-----NGIKILATSD-GI------RLL-RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPG  695 (1106)
Q Consensus       629 ~~d-----g~i~iwd~~~-~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  695 (1106)
                      +.+     +.+.+|++.. +.      ..+ ..+.........       .+.                 ....+.....
T Consensus       295 ~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-------~~~-----------------~~~~v~~~~~  350 (902)
T 2oaj_A          295 KSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIF-------PLP-----------------TNVPIVNILP  350 (902)
T ss_dssp             ECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEE-------CCS-----------------SSSCEEEEEE
T ss_pred             CCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEE-------ecC-----------------CCCceEEEEE
Confidence            665     3788998531 10      000 000000000000       000                 0000000000


Q ss_pred             ---CCCCccccCCCCccccccCCCceeeEecCCCCCCccc--------------e--------------------ecccC
Q 001295          696 ---MNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQC--------------R--------------------SLRLP  738 (1106)
Q Consensus       696 ---~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~--------------~--------------------~~~~~  738 (1106)
                         .........+...+++++.|+.+++|++.........              .                    ....+
T Consensus       351 ~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~  430 (902)
T 2oaj_A          351 IPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYL  430 (902)
T ss_dssp             CCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCS
T ss_pred             CCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCc
Confidence               0000001123446788888999999998543211000              0                    00001


Q ss_pred             ccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEE
Q 001295          739 ENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL  818 (1106)
Q Consensus       739 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~  818 (1106)
                      -.+|...+..++|+|+++.+++++.|++|++||+..+.....         .++...    +.. ..+.+|...|.+++|
T Consensus       431 l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~---------~~~~~~----l~~-~~~~~h~~~V~svaf  496 (902)
T 2oaj_A          431 LKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDN---------ASFEVN----LSR-TLNKAKELAVDKISF  496 (902)
T ss_dssp             CCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTT---------BCEEEE----HHH-HTTCSSSCCEEEEEE
T ss_pred             ccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCC---------ceEEee----chh-hcCCCCCCceeEEEe
Confidence            134555666677889999999999999999999875421100         000000    000 001138899999999


Q ss_pred             ecCCCEEEEEe-CCeEEEEEcCCCc---------------------------------------------eeeeecCCCC
Q 001295          819 SKNDSYVMSAS-GGKISLFNMMTFK---------------------------------------------TMATFMPPPP  852 (1106)
Q Consensus       819 s~~~~~l~~~s-dg~i~vwd~~~~~---------------------------------------------~~~~~~~~~~  852 (1106)
                      +||+++||+|+ ||+|+|||+.+++                                             ++..+.+|.+
T Consensus       497 spdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~  576 (902)
T 2oaj_A          497 AAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKG  576 (902)
T ss_dssp             ETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSC
T ss_pred             cCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCC
Confidence            99999999999 9999999998652                                             3567888999


Q ss_pred             CeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEE-----Eec-CcccCeeEEEEe-----cCC---CEEEEEcCCCcE
Q 001295          853 AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS-----KLK-GHSKRITGLAFS-----HAL---NVLVSSGADSQL  918 (1106)
Q Consensus       853 ~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~-----~l~-~h~~~V~~l~~s-----~d~---~~l~s~s~Dg~i  918 (1106)
                      .|++++||| || +||+|+.|++|+|||+.++..+.     .+. +|.+.|++|+|+     |||   ++|++|+.|++|
T Consensus       577 ~V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv  654 (902)
T 2oaj_A          577 KTSAINNSN-IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEV  654 (902)
T ss_dssp             SEEEEEECB-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEE
T ss_pred             cEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcE
Confidence            999999999 88 99999999999999998877653     343 899999999999     886   899999999999


Q ss_pred             EEEeC---CCcccccceeecccCCCCC--CCCCCceEE-Ec----------------------CCCcEEEEEeCCeEEEE
Q 001295          919 CVWSS---DGWEKQKNRFLQIPTGRTP--TAQSDTRVQ-FH----------------------QDQIHFLVVHETQLAIF  970 (1106)
Q Consensus       919 ~vwd~---~~~~~~~~~~~~~~~~~~~--~~~~i~~~~-~s----------------------~dg~~l~~~~d~~v~i~  970 (1106)
                      ++||+   .+++.     ...+.+|..  ....|..++ |+                      +++..|+++ +..|++|
T Consensus       655 ~~wd~~p~~~g~~-----~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~-~~~ir~~  728 (902)
T 2oaj_A          655 ITYKILPASGGKF-----DVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG-FDDIRLI  728 (902)
T ss_dssp             EEEEEEECGGGCE-----EEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC-SSEEEEE
T ss_pred             EEEEEecCCCCcE-----EEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe-ccceEEE
Confidence            99999   55543     222222210  013555565 55                      556555544 8899999


Q ss_pred             ecCCceEeeecccCCCCCCeeEE---E------ECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCcc
Q 001295          971 ETTKLECVKQWVPRESSAPITHA---T------FSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVH 1041 (1106)
Q Consensus       971 d~~~~~~~~~~~~~~h~~~v~~l---~------~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 1041 (1106)
                      ++.++++.+...  .|.-.+.++   .      |++++..|++++.||+|++|++.+++++..+......-.    ..+.
T Consensus       729 ~~~~~k~~~k~~--~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~~~~~----~~~~  802 (902)
T 2oaj_A          729 TLGKSKSTHKGF--KYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHIPFPIAA----KYIT  802 (902)
T ss_dssp             CTTCCCEEEEEC--SSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEECSSCCCH----HHHT
T ss_pred             eCccccceeeEc--ccceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEECcchHHHhhccCCccccc----cccc
Confidence            999999987764  455566665   5      788999999999999999999999999988773221110    0011


Q ss_pred             ceEEEEeCCCCCEEEEEeC
Q 001295         1042 PLVIAAHPQEPNEFALGLS 1060 (1106)
Q Consensus      1042 ~~~~~~~~~d~~~l~t~~~ 1060 (1106)
                        ...|.+ +|+.++-.+.
T Consensus       803 --~~~~~~-~G~~~~~~~~  818 (902)
T 2oaj_A          803 --ESSVLR-NGDIAIRVSE  818 (902)
T ss_dssp             --TCEECT-TSCEEEECSS
T ss_pred             --ceEEcC-CCCEEEEeCh
Confidence              356666 5777665543

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=6.7e-55  Score=531.45  Aligned_cols=523  Identities=13%  Similarity=0.159  Sum_probs=437.6

Q ss_pred             ceeeeccCCCC-cEEEEEec--CCCeEEEEEeccCcEEEEecCCc------ceeEEeeeeeeccCcCCccccccccCCCC
Q 001295          342 TVTRTLNQGSS-PMSMDFHP--VQQTLLLVGTNVGDIGLWEVGSR------ERLVLRNFKVWDLGACSMPLQAALVKDPG  412 (1106)
Q Consensus       342 ~~~~~~~h~~~-v~~~~~sp--~g~~llatg~~dg~i~iwd~~~~------~~~~~~~~~~~d~~~~~~~~~~~~~~~h~  412 (1106)
                      ......+|.+. |++++|+|  +|++ ||+|+.||.|+|||+.++      +....                 ..+.+|.
T Consensus        55 ~~~~~~~h~~~~v~~~~~sp~~~~~~-l~s~~~dg~v~vw~~~~~~~~~~~~~~~~-----------------~~~~~~~  116 (615)
T 1pgu_A           55 PVVQFTGHGSSVVTTVKFSPIKGSQY-LCSGDESGKVIVWGWTFDKESNSVEVNVK-----------------SEFQVLA  116 (615)
T ss_dssp             SEEEECTTTTSCEEEEEECSSTTCCE-EEEEETTSEEEEEEEEEEGGGTEEEEEEE-----------------EEEECCS
T ss_pred             cceEEecCCCceEEEEEECcCCCCCE-EEEecCCCEEEEEeCCCCccccccccccc-----------------chhhccc
Confidence            34444559999 99999999  9995 999999999999999765      11111                 1357899


Q ss_pred             cCeEEEEEccCCCEEEEEeCC----CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeC
Q 001295          413 VSVNRVIWSPDGSLFGVAYSR----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA  488 (1106)
Q Consensus       413 ~~V~~l~~spdg~~las~~~d----~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~  488 (1106)
                      ..|.+++|+|++++|++++.+    +.|.+||  +++.+.   .+.+|...|.+++|+|+++. ++++++.|+.|++||+
T Consensus       117 ~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~---~~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~v~vwd~  190 (615)
T 1pgu_A          117 GPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLG---EVSGHSQRINACHLKQSRPM-RSMTVGDDGSVVFYQG  190 (615)
T ss_dssp             SCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEE---ECCSCSSCEEEEEECSSSSC-EEEEEETTTEEEEEET
T ss_pred             ccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcce---eeecCCccEEEEEECCCCCc-EEEEEeCCCcEEEEeC
Confidence            999999999999999999987    6888888  444443   67899999999999999975 6999999999999999


Q ss_pred             CCCceeEEEeccCC---CeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEe-e---CCCCeeEEEEEecCCCeEE
Q 001295          489 TNGAKQYIFEGHEA---PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-E---APGRWCTTMAYSADGTRTY  561 (1106)
Q Consensus       489 ~~~~~~~~~~~h~~---~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~---~~~~~v~~~~~s~~~~~~~  561 (1106)
                      .+++.+..+.+|..   .|.+++|+++ ++.+|++++.||.|++||+.+.+....+ .   .+...|.+++|+ ++.   
T Consensus       191 ~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~---  265 (615)
T 1pgu_A          191 PPFKFSASDRTHHKQGSFVRDVEFSPD-SGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQ---  265 (615)
T ss_dssp             TTBEEEEEECSSSCTTCCEEEEEECST-TCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSS---
T ss_pred             CCcceeeeecccCCCCceEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCC---
Confidence            99999999999999   9999998764 1479999999999999999988877776 4   666667777666 554   


Q ss_pred             EeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCC--CCCcCeEEEccCCCEEEEEeCCCcEEEEEc
Q 001295          562 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG--LPASPRIRFNKDGCLLAVSTNDNGIKILAT  639 (1106)
Q Consensus       562 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~  639 (1106)
                                        ++++++.|+.|++||+.+++.+..+..+..  ...+.++.|. ++.++++++.||.|++||+
T Consensus       266 ------------------~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~  326 (615)
T 1pgu_A          266 ------------------KFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYEL  326 (615)
T ss_dssp             ------------------EEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEET
T ss_pred             ------------------EEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEEC
Confidence                              799999999999999999999988876521  1346677775 8999999999999999999


Q ss_pred             cCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCcee
Q 001295          640 SDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSK  719 (1106)
Q Consensus       640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~  719 (1106)
                      .++ +.+..+.+|...+..                                         ..+ ++   +++++.|+.++
T Consensus       327 ~~~-~~~~~~~~~~~~v~~-----------------------------------------~~~-~~---l~~~~~dg~i~  360 (615)
T 1pgu_A          327 GHD-EVLKTISGHNKGITA-----------------------------------------LTV-NP---LISGSYDGRIM  360 (615)
T ss_dssp             TEE-EEEEEECCCSSCEEE-----------------------------------------EET-TT---TEEEETTSCEE
T ss_pred             CCC-cEEEEEeCCCCCEEE-----------------------------------------EEe-cC---cEEECCCCeEE
Confidence            876 555666665543321                                         112 22   89999999999


Q ss_pred             eEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCc
Q 001295          720 VWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIM  799 (1106)
Q Consensus       720 vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~  799 (1106)
                      +|++.         .+.   ..|...|.+++| +++..+++++.|+.+++|++.....                      
T Consensus       361 ~w~~~---------~~~---~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~----------------------  405 (615)
T 1pgu_A          361 EWSSS---------SMH---QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEF----------------------  405 (615)
T ss_dssp             ETTTT---------EEE---CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEEC----------------------
T ss_pred             EEEch---------hhc---CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcc----------------------
Confidence            99987         111   348899999999 6678899999999999998763211                      


Q ss_pred             cccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeC-CCcEEE
Q 001295          800 MTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-DSSIQI  878 (1106)
Q Consensus       800 ~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~-dg~v~i  878 (1106)
                                ...+.+++++|++.+++++.++.+.+|++.+++.+..+. +...+++++|+   +++|++++. ||.|++
T Consensus       406 ----------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~l~~~~~~d~~i~~  471 (615)
T 1pgu_A          406 ----------GSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS---QNYVAVGLEEGNTIQV  471 (615)
T ss_dssp             ----------SSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC---SSEEEEEETTTSCEEE
T ss_pred             ----------cCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc-cCCCceEEEEc---CCEEEEeecCCCeEEE
Confidence                      125788999999999999888999999999999888887 78899999998   679999999 999999


Q ss_pred             EEeecceEE-EEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCC-CCCCCCCCceEEEcC--
Q 001295          879 YNVRVDEVK-SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTG-RTPTAQSDTRVQFHQ--  954 (1106)
Q Consensus       879 wd~~~~~~~-~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~s~--  954 (1106)
                      ||+.+++.. ..+.+|...|++++|+|++++|++++.||.|++||+.+++.     +....+ |.   ..|.+++|+|  
T Consensus       472 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~-----~~~~~~~h~---~~v~~~~~sp~~  543 (615)
T 1pgu_A          472 FKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREV-----KTSRWAFRT---SKINAISWKPAE  543 (615)
T ss_dssp             EETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----EECCSCCCS---SCEEEEEECCCC
T ss_pred             EECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcc-----eeEeecCCC---CceeEEEEcCcc
Confidence            999988766 77889999999999999999999999999999999998654     333333 43   4899999999  


Q ss_pred             --------CCcEEEE-EeCCeEEEEecCCc-eEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCC
Q 001295          955 --------DQIHFLV-VHETQLAIFETTKL-ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1018 (1106)
Q Consensus       955 --------dg~~l~~-~~d~~v~i~d~~~~-~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~ 1018 (1106)
                              ++++|++ +.|+.|++||+.++ +++..+.  +|...|++++|+||++ |++++.||+|++|++++
T Consensus       544 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          544 KGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN--AHKDGVNNLLWETPST-LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             ------CCSCCEEEEEETTSCEEEEESSCTTCCEEETT--SSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred             ccccccccCCCEEEEEcCCCcEEEEECCCCceechhhh--cCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence                    9999999 57899999999998 6777765  8999999999999999 99999999999999875

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-54  Score=539.18  Aligned_cols=593  Identities=11%  Similarity=0.074  Sum_probs=417.6

Q ss_pred             cCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEe
Q 001295          408 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD  487 (1106)
Q Consensus       408 ~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd  487 (1106)
                      ..+|.+.|++++|+|++++||+|+.||+|+||+..+.+...    ...|...|.+++|+| |+  +|++++.|++|+|||
T Consensus        13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~----~~~~~~~V~~l~fsp-g~--~L~S~s~D~~v~lWd   85 (902)
T 2oaj_A           13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI----KLEDRSAIKEMRFVK-GI--YLVVINAKDTVYVLS   85 (902)
T ss_dssp             EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE----ECSSCCCEEEEEEET-TT--EEEEEETTCEEEEEE
T ss_pred             ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEE----EcCCCCCEEEEEEcC-CC--EEEEEECcCeEEEEE
Confidence            45899999999999999999999999999999998766443    235788999999999 77  899999999999999


Q ss_pred             CCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCce-----------eEeeCCCCeeEEEEEecC
Q 001295          488 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR-----------VDYEAPGRWCTTMAYSAD  556 (1106)
Q Consensus       488 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----------~~~~~~~~~v~~~~~s~~  556 (1106)
                      +.+++++..+. |...|++++|++  ++++|++|+.||.|++||+++....           ..+..|...|.+++|+|+
T Consensus        86 ~~~~~~~~~~~-~~~~V~~v~~sp--~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~  162 (902)
T 2oaj_A           86 LYSQKVLTTVF-VPGKITSIDTDA--SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR  162 (902)
T ss_dssp             TTTCSEEEEEE-CSSCEEEEECCT--TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred             CCCCcEEEEEc-CCCCEEEEEECC--CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC
Confidence            99999999887 778999999865  4579999999999999999875432           111234444555555443


Q ss_pred             CCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccC----------------CCCCCcCeEEEcc
Q 001295          557 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD----------------GGLPASPRIRFNK  620 (1106)
Q Consensus       557 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----------------~~~~~v~~v~~s~  620 (1106)
                      +                    +..+++++.|+.| +||+.+++.+..+..+                .+...|.+++|+|
T Consensus       163 ~--------------------~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp  221 (902)
T 2oaj_A          163 D--------------------IGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP  221 (902)
T ss_dssp             E--------------------EEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT
T ss_pred             C--------------------CCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC
Confidence            2                    2468899999999 9999999998888754                1235699999999


Q ss_pred             CCCEEEEEeCCCcEEEEEccCCchhhh--hh---cccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCC
Q 001295          621 DGCLLAVSTNDNGIKILATSDGIRLLR--TF---ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPG  695 (1106)
Q Consensus       621 ~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  695 (1106)
                      +|++|++++.||.|++||+.++ +.+.  .+   ..|... ...+..   .+..                 ..++. ...
T Consensus       222 dg~~lasgs~Dg~i~lWd~~~g-~~~~~r~l~~~~~~~~~-~~~~~~---~~~~-----------------~~~V~-~v~  278 (902)
T 2oaj_A          222 NSLHIITIHEDNSLVFWDANSG-HMIMARTVFETEINVPQ-PDYIRD---SSTN-----------------AAKIS-KVY  278 (902)
T ss_dssp             TSSEEEEEETTCCEEEEETTTC-CEEEEECSSCSCTTSCC-TTCCCC---CSSC-----------------CCEEE-EEE
T ss_pred             CCCEEEEEECCCeEEEEECCCC-cEEEEEeecccccCCCC-CcCCCC---Cccc-----------------cCCee-EEE
Confidence            9999999999999999999887 3322  11   111100 000000   0000                 00000 000


Q ss_pred             CCCCccccCCC-CccccccCC-----CceeeEecCCCCC---------------CccceecccCccccccceEEEEEcC-
Q 001295          696 MNGDVRSLADV-KPRITEESN-----DKSKVWKLTELSE---------------PNQCRSLRLPENLRATKISRLIFTN-  753 (1106)
Q Consensus       696 ~~~~~~~~~~~-~~l~~~~~d-----~~i~vw~~~~~~~---------------~~~~~~~~~~~~~~~~~i~~~~~s~-  753 (1106)
                      |  .....+++ ..+++++.+     ..+.+|++.....               ....+.+.+   .+...|.++.+.+ 
T Consensus       279 w--~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~  353 (902)
T 2oaj_A          279 W--MCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPL---PTNVPIVNILPIPR  353 (902)
T ss_dssp             E--EECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECC---SSSSCEEEEEECCS
T ss_pred             E--EecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEec---CCCCceEEEEECCC
Confidence            0  00012332 445666554     3788888532100               000111111   2456788888765 


Q ss_pred             ---------CCceEEEeecCceEEEeeccccccCCC---------Cc--c-----ccccCccccCCCC---CCccccccC
Q 001295          754 ---------SGNAILALASNAIHLLWKWQRTERNSS---------GK--A-----TASVAPQLWQPPS---GIMMTNDVT  805 (1106)
Q Consensus       754 ---------~~~~l~~~~~dg~i~iw~~~~~~~~~~---------~~--~-----~~~~~~~~w~~~~---~~~~~~~~~  805 (1106)
                               +...+++++.|+.+++|++..+.....         +.  .     ......++|+...   +.. ...+.
T Consensus       354 ~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~-~~~l~  432 (902)
T 2oaj_A          354 QSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNK-DYLLK  432 (902)
T ss_dssp             SCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCC-CCSCC
T ss_pred             CCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCC-CCccc
Confidence                     334688888999999999854321100         00  0     0001122343210   111 11233


Q ss_pred             CCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceee--ee---------cCCCCCeeEEEEecCCCceEEEeeCC
Q 001295          806 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMA--TF---------MPPPPAATFLAFHPQDNNIIAIGMDD  873 (1106)
Q Consensus       806 ~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~--~~---------~~~~~~v~~l~~s~~d~~~la~g~~d  873 (1106)
                      +  |...+.+++|+|++++|++|+ |++|++||+.++....  .+         .+|...|++++|+| |+++||+|+.|
T Consensus       433 G--~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~D  509 (902)
T 2oaj_A          433 G--GVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIET  509 (902)
T ss_dssp             C--SBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEETT
T ss_pred             C--CcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecC-CCCeEEEEecC
Confidence            3  777888899999999999999 9999999998874321  11         17888999999999 99999999999


Q ss_pred             CcEEEEEeecc---------------------------------------------eEEEEecCcccCeeEEEEecCCCE
Q 001295          874 SSIQIYNVRVD---------------------------------------------EVKSKLKGHSKRITGLAFSHALNV  908 (1106)
Q Consensus       874 g~v~iwd~~~~---------------------------------------------~~~~~l~~h~~~V~~l~~s~d~~~  908 (1106)
                      |+|+|||+.++                                             +++..+.+|.+.|++|+||||| +
T Consensus       510 gtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~  588 (902)
T 2oaj_A          510 GDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-F  588 (902)
T ss_dssp             SCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-E
T ss_pred             cEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-E
Confidence            99999999876                                             3477889999999999999999 9


Q ss_pred             EEEEcCCCcEEEEeCCCcccccceeecccC-CCCCCCCCCceEEEc-----CCC---cEEEE-EeCCeEEEEec---CCc
Q 001295          909 LVSSGADSQLCVWSSDGWEKQKNRFLQIPT-GRTPTAQSDTRVQFH-----QDQ---IHFLV-VHETQLAIFET---TKL  975 (1106)
Q Consensus       909 l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~s-----~dg---~~l~~-~~d~~v~i~d~---~~~  975 (1106)
                      ||+|+.|++|+|||+++........+.... +|.   ..|.+++|+     |||   ++|++ +.|++|++||+   .+|
T Consensus       589 lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~---~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g  665 (902)
T 2oaj_A          589 VGIAYAAGSLMLIDRRGPAIIYMENIREISGAQS---ACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGG  665 (902)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCC---CCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGG
T ss_pred             EEEEeCCCcEEEEECCCCeEEEEeehhHhccccc---cceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCC
Confidence            999999999999999875432211122332 555   489999999     885   88888 58999999999   788


Q ss_pred             eEeeecccC---CCCCCeeEEE-EC----------------------CCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCc
Q 001295          976 ECVKQWVPR---ESSAPITHAT-FS----------------------CDSQLVYACFLDATVCVFSAANLKLRCRINPSA 1029 (1106)
Q Consensus       976 ~~~~~~~~~---~h~~~v~~l~-~s----------------------~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~ 1029 (1106)
                      ++...+...   .|.++|.+++ |+                      +++.+|+++  +..|+||++.+++..++..   
T Consensus       666 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~~---  740 (902)
T 2oaj_A          666 KFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKSTHKGF---  740 (902)
T ss_dssp             CEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEEEC---
T ss_pred             cEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccccceeeEc---
Confidence            887766521   1357888887 65                      455555544  8899999999998887653   


Q ss_pred             ccCCCCCCCCccceEE---E------EeCCCCCEEEEEeCCCcEEEEeecCCC--CccCCCC
Q 001295         1030 YLPAGVSSSNVHPLVI---A------AHPQEPNEFALGLSDGGVHVFEPLESE--GKWGVPP 1080 (1106)
Q Consensus      1030 ~~~~~~~~~~v~~~~~---~------~~~~d~~~l~t~~~Dg~v~vW~~~~~~--~~~~~~~ 1080 (1106)
                          +|. ..+.  ++   .      |++ ++..|++++.||+|++|++.+.+  ..+.+++
T Consensus       741 ----~~~-~~~~--~v~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~  794 (902)
T 2oaj_A          741 ----KYP-LAAT--GLSYISTVEKNNDRK-NLTVIITLEINGHLRVFTIPDFKEQMSEHIPF  794 (902)
T ss_dssp             ----SSC-EEEE--EEEEEEEECSSSCEE-EEEEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred             ----ccc-eeee--EEEEEEecccccccc-CceEEEEEeCCCcEEEEECcchHHHhhccCCc
Confidence                111 1133  33   4      666 68899999999999999999999  4444433

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=3.3e-46  Score=470.46  Aligned_cols=465  Identities=17%  Similarity=0.223  Sum_probs=372.8

Q ss_pred             ccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCE
Q 001295          347 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  426 (1106)
Q Consensus       347 ~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~  426 (1106)
                      .+|.+.|++++|||+|++ ||+|+.||.|+|||+.+++.+..                   +.+|.+.|.+++|+|++++
T Consensus        10 ~~h~~~v~~i~~sp~~~~-la~~~~~g~v~iwd~~~~~~~~~-------------------~~~~~~~v~~~~~s~~~~~   69 (814)
T 3mkq_A           10 SNRSDRVKGIDFHPTEPW-VLTTLYSGRVEIWNYETQVEVRS-------------------IQVTETPVRAGKFIARKNW   69 (814)
T ss_dssp             EEECSCEEEEEECSSSSE-EEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEEEGGGTE
T ss_pred             ecCCCceEEEEECCCCCE-EEEEeCCCEEEEEECCCCceEEE-------------------EecCCCcEEEEEEeCCCCE
Confidence            349999999999999995 99999999999999999887663                   6789999999999999999


Q ss_pred             EEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCC-ceeEEEeccCCCeE
Q 001295          427 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPVY  505 (1106)
Q Consensus       427 las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~  505 (1106)
                      |++++.||.|+|||+.+++.+.   .+.+|.+.|.+++|+|+++  +|++++.|++|++||+.++ .....+.+|...|.
T Consensus        70 l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~  144 (814)
T 3mkq_A           70 IIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVM  144 (814)
T ss_dssp             EEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEE
T ss_pred             EEEEeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEE
Confidence            9999999999999999988665   5788999999999999999  7999999999999999987 77788999999999


Q ss_pred             EEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCC-CeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEE
Q 001295          506 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG-RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  584 (1106)
Q Consensus       506 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  584 (1106)
                      +++|++. ++..|++++.||.|++||+........+..+. ..+..++|+|.                   +++.+++++
T Consensus       145 ~~~~~p~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-------------------~~~~~l~~~  204 (814)
T 3mkq_A          145 CVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL-------------------PDKPYMITA  204 (814)
T ss_dssp             EEEEETT-EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCS-------------------TTCCEEEEE
T ss_pred             EEEEEcC-CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEEC-------------------CCCCEEEEE
Confidence            9999762 44799999999999999998776655554433 44444444441                   056689999


Q ss_pred             ECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCC
Q 001295          585 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK  664 (1106)
Q Consensus       585 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  664 (1106)
                      +.||.|++||+.+++.+..+..+  ...|.+++|+|+++++++++.||.|++||..++ +....+               
T Consensus       205 ~~dg~i~~~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~---------------  266 (814)
T 3mkq_A          205 SDDLTIKIWDYQTKSCVATLEGH--MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY-KVEKTL---------------  266 (814)
T ss_dssp             CTTSEEEEEETTTTEEEEEEECC--SSCEEEEEECSSSSEEEEEETTSCEEEEETTTC-SEEEEE---------------
T ss_pred             eCCCEEEEEECCCCcEEEEEcCC--CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEe---------------
Confidence            99999999999999999988866  447999999999999999999999999998765 221111               


Q ss_pred             CCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCcccccc
Q 001295          665 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT  744 (1106)
Q Consensus       665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~  744 (1106)
                                                                                                 ..+..
T Consensus       267 ---------------------------------------------------------------------------~~~~~  271 (814)
T 3mkq_A          267 ---------------------------------------------------------------------------NVGLE  271 (814)
T ss_dssp             ---------------------------------------------------------------------------CCSSS
T ss_pred             ---------------------------------------------------------------------------ecCCC
Confidence                                                                                       11556


Q ss_pred             ceEEEEEcCCCceE-EEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCC
Q 001295          745 KISRLIFTNSGNAI-LALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS  823 (1106)
Q Consensus       745 ~i~~~~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~  823 (1106)
                      .+.+++|+|++..+ ++++.++.+.+|++..                                     ....+.++|+++
T Consensus       272 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~g~  314 (814)
T 3mkq_A          272 RSWCIATHPTGRKNYIASGFDNGFTVLSLGN-------------------------------------DEPTLSLDPVGK  314 (814)
T ss_dssp             SEEEEEECTTCGGGEEEEEETTEEEEEECSC-------------------------------------CSCCEEECSSSE
T ss_pred             cEEEEEEccCCCceEEEEEeCCCEEEEEcCC-------------------------------------CCceeEECCCCC
Confidence            88999999998753 6666677788887431                                     123577889999


Q ss_pred             EEEEEe-CC---eEE------EEEcCCCcee----eeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEE
Q 001295          824 YVMSAS-GG---KIS------LFNMMTFKTM----ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK  889 (1106)
Q Consensus       824 ~l~~~s-dg---~i~------vwd~~~~~~~----~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~  889 (1106)
                      .+++++ +.   .+.      .|++..+...    ..+..+...+.+++|+| ++++|++++ ||.+.+|++......  
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~-~~~~~i~~~~~~~~~--  390 (814)
T 3mkq_A          315 LVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSP-NGRFVTVVG-DGEYVIYTALAWRNK--  390 (814)
T ss_dssp             EEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECT-TSSEEEEEE-TTEEEEEETTTTEEE--
T ss_pred             EEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECC-CCCEEEEec-CCEEEEEECcccccc--
Confidence            988876 32   122      2333333322    33455667899999999 999999998 899999998654432  


Q ss_pred             ecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCC---cEEEE-EeCC
Q 001295          890 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ---IHFLV-VHET  965 (1106)
Q Consensus       890 l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg---~~l~~-~~d~  965 (1106)
                         +.+.|.+++|+||+++|++++.||+|++|+.-.             ++.   ..+..++|+|+|   .+|++ +.++
T Consensus       391 ---~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~~-------------~~~---~~v~~~~~s~dg~~~~~l~~~~~d~  451 (814)
T 3mkq_A          391 ---AFGKCQDFVWGPDSNSYALIDETGQIKYYKNFK-------------EVT---SWSVPMHSAIDRLFSGALLGVKSDG  451 (814)
T ss_dssp             ---EEEECSEEEECTTSSCEEEECTTCCEEEEETTE-------------ECT---TCCCCCSSCCCEEECSSSEEEEETT
T ss_pred             ---CCCceEEEEEeCCCCeEEEEeCCCcEEEEECCC-------------Ccc---ceEEcCCcCccceecceEEEEecCC
Confidence               356789999999999999999999999996432             121   256888999998   45555 7999


Q ss_pred             eEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEE------EcCCeEEEE
Q 001295          966 QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYAC------FLDATVCVF 1014 (1106)
Q Consensus       966 ~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~------s~Dg~i~vw 1014 (1106)
                      .|++||+.+++.+..+.  .|..   .++|+|||++|+++      +.++.+.+|
T Consensus       452 ~v~~~d~~~~~~~~~~~--~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~  501 (814)
T 3mkq_A          452 FVYFFDWDNGTLVRRID--VNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLL  501 (814)
T ss_dssp             EEEEECTTTCCEEEEES--SCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEE
T ss_pred             EEEEEECCcCcEEEEEe--cCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEE
Confidence            99999999999988875  3333   99999999999999      555555554

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=3e-44  Score=452.64  Aligned_cols=466  Identities=16%  Similarity=0.211  Sum_probs=375.8

Q ss_pred             ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEE
Q 001295          407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  486 (1106)
Q Consensus       407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw  486 (1106)
                      .+.+|.+.|.+++|||+|++||+++.||.|+|||+.+++.+.   .+.+|.+.|.+++|+|+++  +|++|+.||.|++|
T Consensus         8 ~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw   82 (814)
T 3mkq_A            8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVF   82 (814)
T ss_dssp             EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEE
T ss_pred             eeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---EEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEEE
Confidence            478999999999999999999999999999999999987665   5778999999999999999  89999999999999


Q ss_pred             eCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCC-CceeEeeCCCCeeEEEEEec-CCCeEEEee
Q 001295          487 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSA-DGTRTYQGF  564 (1106)
Q Consensus       487 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~~~~~~  564 (1106)
                      |+.+++.+..+.+|...|.+++|+++  +.+|++++.||.|++||+++. .....+..+...+.+++|+| ++       
T Consensus        83 ~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-------  153 (814)
T 3mkq_A           83 NYNTGEKVVDFEAHPDYIRSIAVHPT--KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDP-------  153 (814)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSS--SSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEE-------
T ss_pred             ECCCCcEEEEEecCCCCEEEEEEeCC--CCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCC-------
Confidence            99999999999999999999998764  478999999999999999876 34445666667677777666 44       


Q ss_pred             eccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEcc--CCCEEEEEeCCCcEEEEEccCC
Q 001295          565 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK--DGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       565 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~--~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                                    +.+++++.||.|++||+.+++....+..+. ...+.+++|+|  ++.++++++.||.|++||..++
T Consensus       154 --------------~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~  218 (814)
T 3mkq_A          154 --------------STFASGCLDRTVKVWSLGQSTPNFTLTTGQ-ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK  218 (814)
T ss_dssp             --------------EEEEEEETTSEEEEEETTCSSCSEEEECCC-TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT
T ss_pred             --------------CEEEEEeCCCeEEEEECCCCcceeEEecCC-CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence                          379999999999999999888887776543 24789999999  9999999999999999998766


Q ss_pred             chhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEe
Q 001295          643 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK  722 (1106)
Q Consensus       643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~  722 (1106)
                       .....+                                                                         
T Consensus       219 -~~~~~~-------------------------------------------------------------------------  224 (814)
T 3mkq_A          219 -SCVATL-------------------------------------------------------------------------  224 (814)
T ss_dssp             -EEEEEE-------------------------------------------------------------------------
T ss_pred             -cEEEEE-------------------------------------------------------------------------
Confidence             221111                                                                         


Q ss_pred             cCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCcccc
Q 001295          723 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN  802 (1106)
Q Consensus       723 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  802 (1106)
                                       .+|...|.+++|+|+++.+++++.||.|++|++..                      +.....
T Consensus       225 -----------------~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~----------------------~~~~~~  265 (814)
T 3mkq_A          225 -----------------EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST----------------------YKVEKT  265 (814)
T ss_dssp             -----------------ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT----------------------CSEEEE
T ss_pred             -----------------cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC----------------------CcEEEE
Confidence                             12667899999999999999999999999998763                      222211


Q ss_pred             ccCCCCCCCCeeEEEEecCCC--EEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCc---EE
Q 001295          803 DVTDSNPEEAVPCFALSKNDS--YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSS---IQ  877 (1106)
Q Consensus       803 ~~~~~~~~~~v~~l~~s~~~~--~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~---v~  877 (1106)
                       +.  .+...+.+++|+|+++  +++++.++.+.+|++....            ..+.++| +++++++++.+..   +.
T Consensus       266 -~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~-~g~~~~~~~~~~~~~~~~  329 (814)
T 3mkq_A          266 -LN--VGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE------------PTLSLDP-VGKLVWSGGKNAAASDIF  329 (814)
T ss_dssp             -EC--CSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCS------------CCEEECS-SSEEEEECCTTSCTTCEE
T ss_pred             -ee--cCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCC------------ceeEECC-CCCEEEECcccccceeee
Confidence             12  2678899999999997  5777779999999876532            3467788 8888888876653   11


Q ss_pred             E------EEeecceE----EEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCC
Q 001295          878 I------YNVRVDEV----KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD  947 (1106)
Q Consensus       878 i------wd~~~~~~----~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i  947 (1106)
                      .      |++..+..    ...+..|...+.+++|+|+|++|++++ |+.+.+|++.......             ...+
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~~-------------~~~i  395 (814)
T 3mkq_A          330 TAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNKA-------------FGKC  395 (814)
T ss_dssp             EEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEEE-------------EEEC
T ss_pred             eeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECccccccC-------------CCce
Confidence            1      22233322    244566778899999999999999998 8999999986532211             1357


Q ss_pred             ceEEEcCCCcEEEEE-eCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCC---CEEEEEEcCCeEEEEEcCCceeEE
Q 001295          948 TRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDS---QLVYACFLDATVCVFSAANLKLRC 1023 (1106)
Q Consensus       948 ~~~~~s~dg~~l~~~-~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~---~~l~t~s~Dg~i~vwd~~~~~~~~ 1023 (1106)
                      .+++|+|||++++++ .++.|++|+.-          .+|...+.+++|+||+   ++|++++.|++|++||+.+++.+.
T Consensus       396 ~~~~~spdg~~la~~~~~g~v~l~~~~----------~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~  465 (814)
T 3mkq_A          396 QDFVWGPDSNSYALIDETGQIKYYKNF----------KEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVR  465 (814)
T ss_dssp             SEEEECTTSSCEEEECTTCCEEEEETT----------EECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEE
T ss_pred             EEEEEeCCCCeEEEEeCCCcEEEEECC----------CCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEE
Confidence            899999999999995 78999999632          2567889999999999   688999999999999999999998


Q ss_pred             eeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEE------eCCCcEEEEe
Q 001295         1024 RINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG------LSDGGVHVFE 1068 (1106)
Q Consensus      1024 ~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~------~~Dg~v~vW~ 1068 (1106)
                      .+.       +|    ..  .+.|+| ||++|+++      +.++.+.+|.
T Consensus       466 ~~~-------~~----~~--~v~~s~-dg~~la~~~~~~~~~~~~~~~~~~  502 (814)
T 3mkq_A          466 RID-------VN----AK--DVIWSD-NGELVMIVNTNSNGDEASGYTLLF  502 (814)
T ss_dssp             EES-------SC----EE--EEEECT-TSSEEEEEECCCSSCSCSEEEEEE
T ss_pred             EEe-------cC----CC--EEEEcC-CCCEEEEEEcCcccCCceEEEEEe
Confidence            877       21    11  689999 79999999      6555555554

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3.7e-44  Score=409.83  Aligned_cols=305  Identities=16%  Similarity=0.316  Sum_probs=260.9

Q ss_pred             ccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCE
Q 001295          347 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  426 (1106)
Q Consensus       347 ~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~  426 (1106)
                      .+|.+.|++++|+|+++ ++++|+.||+|+|||+.+++...                   .+.+|.+.|.+++|+|+|++
T Consensus       105 ~gh~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~-------------------~l~~h~~~V~~v~~~~~~~~  164 (410)
T 1vyh_C          105 SGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFER-------------------TLKGHTDSVQDISFDHSGKL  164 (410)
T ss_dssp             ECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCE-------------------EECCCSSCEEEEEECTTSSE
T ss_pred             cccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEE-------------------EEeccCCcEEEEEEcCCCCE
Confidence            46999999999999999 59999999999999999988765                   37899999999999999999


Q ss_pred             EEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEE
Q 001295          427 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS  506 (1106)
Q Consensus       427 las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~  506 (1106)
                      |++|+.|++|+|||+.+++.+.   .+.+|...|.+++|+|++.  +|++|+.|++|++||+.++.++.++.+|...|.+
T Consensus       165 l~sgs~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~  239 (410)
T 1vyh_C          165 LASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRM  239 (410)
T ss_dssp             EEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred             EEEEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEE
Confidence            9999999999999999887665   6889999999999999999  8999999999999999999999999999999999


Q ss_pred             EeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEEC
Q 001295          507 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD  586 (1106)
Q Consensus       507 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  586 (1106)
                      +.+++  ++.+|++|+.|+.|++||+.+......+..|...|.+++|+|++......... ..........+.++++|+.
T Consensus       240 ~~~~~--~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~sgs~  316 (410)
T 1vyh_C          240 VRPNQ--DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT-GSETKKSGKPGPFLLSGSR  316 (410)
T ss_dssp             EEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCC-SCC-------CCEEEEEET
T ss_pred             EEECC--CCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhc-cccccccCCCCCEEEEEeC
Confidence            99754  55899999999999999999998888899999999999999986421110000 0111223345778999999


Q ss_pred             CCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCC
Q 001295          587 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT  666 (1106)
Q Consensus       587 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  666 (1106)
                      |+.|++||+.+++++..+.+|.  ..|.+++|+|++++|++|+.||.|++||+.++ +.+..+                 
T Consensus       317 D~~i~iwd~~~~~~~~~~~~h~--~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~-~~~~~~-----------------  376 (410)
T 1vyh_C          317 DKTIKMWDVSTGMCLMTLVGHD--NWVRGVLFHSGGKFILSCADDKTLRVWDYKNK-RCMKTL-----------------  376 (410)
T ss_dssp             TSEEEEEETTTTEEEEEEECCS--SCEEEEEECSSSSCEEEEETTTEEEEECCTTS-CCCEEE-----------------
T ss_pred             CCeEEEEECCCCceEEEEECCC--CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceEEEE-----------------
Confidence            9999999999999999998764  47999999999999999999999999998765 222211                 


Q ss_pred             cCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccce
Q 001295          667 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI  746 (1106)
Q Consensus       667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i  746 (1106)
                                                                                               .+|...|
T Consensus       377 -------------------------------------------------------------------------~~h~~~v  383 (410)
T 1vyh_C          377 -------------------------------------------------------------------------NAHEHFV  383 (410)
T ss_dssp             -------------------------------------------------------------------------ECCSSCE
T ss_pred             -------------------------------------------------------------------------cCCCCcE
Confidence                                                                                     1277889


Q ss_pred             EEEEEcCCCceEEEeecCceEEEeec
Q 001295          747 SRLIFTNSGNAILALASNAIHLLWKW  772 (1106)
Q Consensus       747 ~~~~~s~~~~~l~~~~~dg~i~iw~~  772 (1106)
                      .+++|+|++.+|++++.|+.|++|++
T Consensus       384 ~~l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          384 TSLDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             EEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence            99999999999999999999999975

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=6.1e-40  Score=374.90  Aligned_cols=306  Identities=21%  Similarity=0.348  Sum_probs=262.3

Q ss_pred             cCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEe
Q 001295          408 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD  487 (1106)
Q Consensus       408 ~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd  487 (1106)
                      +.+|.++|++++|+|++++|++|+.||+|+|||+.+++...   .+.+|.+.|.+++|+|+++  +|++|+.|++|++||
T Consensus       104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iwd  178 (410)
T 1vyh_C          104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWD  178 (410)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSCCCEEE
T ss_pred             ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEe
Confidence            57899999999999999999999999999999999987665   6889999999999999999  899999999999999


Q ss_pred             CCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeecc
Q 001295          488 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR  567 (1106)
Q Consensus       488 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~  567 (1106)
                      +.+++++..+.+|...|.+++|+++  +.+|++|+.|++|++||++++.....+..|...+.++.+++++.         
T Consensus       179 ~~~~~~~~~~~~h~~~V~~v~~~p~--~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~---------  247 (410)
T 1vyh_C          179 FQGFECIRTMHGHDHNVSSVSIMPN--GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT---------  247 (410)
T ss_dssp             TTSSCEEECCCCCSSCEEEEEECSS--SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS---------
T ss_pred             CCCCceeEEEcCCCCCEEEEEEeCC--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCC---------
Confidence            9999999999999999999998764  47999999999999999999888888887777777766666655         


Q ss_pred             ceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhh
Q 001295          568 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR  647 (1106)
Q Consensus       568 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~  647 (1106)
                                  ++++++.|+.|++||+.+++....+..|.  ..|.+++|+|++.+.                   ...
T Consensus       248 ------------~l~s~s~D~~v~vwd~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~-------------------~~~  294 (410)
T 1vyh_C          248 ------------LIASCSNDQTVRVWVVATKECKAELREHR--HVVECISWAPESSYS-------------------SIS  294 (410)
T ss_dssp             ------------EEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECCSCGGG-------------------GGG
T ss_pred             ------------EEEEEcCCCeEEEEECCCCceeeEecCCC--ceEEEEEEcCccccc-------------------chh
Confidence                        79999999999999999998888887664  468888888754210                   000


Q ss_pred             hhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCC
Q 001295          648 TFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELS  727 (1106)
Q Consensus       648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~  727 (1106)
                      ..                                                                              
T Consensus       295 ~~------------------------------------------------------------------------------  296 (410)
T 1vyh_C          295 EA------------------------------------------------------------------------------  296 (410)
T ss_dssp             GC------------------------------------------------------------------------------
T ss_pred             hh------------------------------------------------------------------------------
Confidence            00                                                                              


Q ss_pred             CCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCC
Q 001295          728 EPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDS  807 (1106)
Q Consensus       728 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  807 (1106)
                                    .            +                                                    
T Consensus       297 --------------~------------~----------------------------------------------------  298 (410)
T 1vyh_C          297 --------------T------------G----------------------------------------------------  298 (410)
T ss_dssp             --------------C------------S----------------------------------------------------
T ss_pred             --------------c------------c----------------------------------------------------
Confidence                          0            0                                                    


Q ss_pred             CCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceE
Q 001295          808 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV  886 (1106)
Q Consensus       808 ~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~  886 (1106)
                       .    .......++.+|++|+ |++|++||+.++.++..+.+|...|++++|+| ++++|++|+.||.|++||+.++++
T Consensus       299 -~----~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~D~~i~vwd~~~~~~  372 (410)
T 1vyh_C          299 -S----ETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRC  372 (410)
T ss_dssp             -C----C-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSCEEEEETTTEEEEECCTTSCC
T ss_pred             -c----cccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCce
Confidence             0    0001112467888888 89999999999999999999999999999999 899999999999999999999999


Q ss_pred             EEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCC
Q 001295          887 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD  924 (1106)
Q Consensus       887 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~  924 (1106)
                      +..+.+|...|++++|+|++.+|++|+.|++|++|+++
T Consensus       373 ~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          373 MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             CEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             EEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence            99999999999999999999999999999999999863

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=7.1e-39  Score=356.51  Aligned_cols=294  Identities=20%  Similarity=0.322  Sum_probs=253.4

Q ss_pred             cceeeec-cCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEE
Q 001295          341 KTVTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI  419 (1106)
Q Consensus       341 ~~~~~~~-~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~  419 (1106)
                      .+....+ +|.+.|++++|+|+|+ +|++|+.||+|+|||+.+++.+..                   +..|...|.+++
T Consensus        45 ~~~~~~l~gH~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~~~  104 (340)
T 1got_B           45 MRTRRTLRGHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTCA  104 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCEEEE-------------------EECSSSCEEEEE
T ss_pred             chhheeecCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCCcceE-------------------eecCCccEEEEE
Confidence            3344444 4999999999999999 599999999999999999887653                   578899999999


Q ss_pred             EccCCCEEEEEeCCCeEEEEEccCCce-eeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEe
Q 001295          420 WSPDGSLFGVAYSRHIVQIYSYHGGDE-VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE  498 (1106)
Q Consensus       420 ~spdg~~las~~~d~~v~iwd~~~~~~-~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  498 (1106)
                      |+|+|++|++|+.|+.|++||+.+++. ......+.+|.+.|.++.|++++.   +++++.|++|++||+.+++.+..+.
T Consensus       105 ~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~~  181 (340)
T 1got_B          105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTFT  181 (340)
T ss_dssp             ECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             ECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEEc
Confidence            999999999999999999999987642 233446789999999999998875   8899999999999999999999999


Q ss_pred             ccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCC
Q 001295          499 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK  578 (1106)
Q Consensus       499 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~  578 (1106)
                      +|.+.|.+++|++  ++.++++|+.|+.|++||+++......+..|...|.+++|+|+++                    
T Consensus       182 ~h~~~v~~~~~~~--~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~--------------------  239 (340)
T 1got_B          182 GHTGDVMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN--------------------  239 (340)
T ss_dssp             CCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSS--------------------
T ss_pred             CCCCceEEEEECC--CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCC--------------------
Confidence            9999999999876  457999999999999999998888777877777777777666665                    


Q ss_pred             CEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhccccccccc
Q 001295          579 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASR  658 (1106)
Q Consensus       579 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  658 (1106)
                       +|++++.|+.|++||+.+++.+..+........|.+++|+|+|++|++|+.||.|++||+.++ .....+         
T Consensus       240 -~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~-~~~~~~---------  308 (340)
T 1got_B          240 -AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA-DRAGVL---------  308 (340)
T ss_dssp             -EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-CEEEEE---------
T ss_pred             -EEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccC-cEeeEe---------
Confidence             799999999999999999988888765554557899999999999999999999999998765 211111         


Q ss_pred             CCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccC
Q 001295          659 TSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLP  738 (1106)
Q Consensus       659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~  738 (1106)
                                                                                                      
T Consensus       309 --------------------------------------------------------------------------------  308 (340)
T 1got_B          309 --------------------------------------------------------------------------------  308 (340)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccceEEEEEcCCCceEEEeecCceEEEee
Q 001295          739 ENLRATKISRLIFTNSGNAILALASNAIHLLWK  771 (1106)
Q Consensus       739 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~  771 (1106)
                       .+|...|.+++|+|++.+|++++.|+.|++|+
T Consensus       309 -~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          309 -AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             -ECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             -ecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence             23778899999999999999999999999996

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=7.5e-39  Score=357.86  Aligned_cols=296  Identities=18%  Similarity=0.283  Sum_probs=255.3

Q ss_pred             ceeeec-cCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEE
Q 001295          342 TVTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW  420 (1106)
Q Consensus       342 ~~~~~~-~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~  420 (1106)
                      .....+ +|.+.|++++|+|++++ |++|+.||+|+|||..+++....                   +..|...|.+++|
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~-l~s~s~Dg~v~vWd~~~~~~~~~-------------------~~~~~~~v~~~~~  114 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRR-IVSSSQDGKVIVWDSFTTNKEHA-------------------VTMPCTWVMACAY  114 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTCCEEEE-------------------EECSSSCCCEEEE
T ss_pred             EEEEEecCCCCeEEEEEECCCCCE-EEEEeCCCeEEEEECCCCCcceE-------------------EecCCCCEEEEEE
Confidence            344444 59999999999999995 99999999999999998877653                   5678889999999


Q ss_pred             ccCCCEEEEEeCCCeEEEEEccCCce---eeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEE
Q 001295          421 SPDGSLFGVAYSRHIVQIYSYHGGDE---VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF  497 (1106)
Q Consensus       421 spdg~~las~~~d~~v~iwd~~~~~~---~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  497 (1106)
                      +|+|.+||+|+.|+.+++|++.....   ......+.+|...|.+++|+|++.  .|++++.|++|++||+++++++..+
T Consensus       115 sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~~~  192 (354)
T 2pbi_B          115 APSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQSF  192 (354)
T ss_dssp             CTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             CCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEEEE
Confidence            99999999999999999999875421   122335778999999999999999  7999999999999999999999999


Q ss_pred             eccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCC
Q 001295          498 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT  577 (1106)
Q Consensus       498 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~  577 (1106)
                      .+|...|.++++++++++.+|++|+.||.|++||++++.....+..|...|.+++|+|++.                   
T Consensus       193 ~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~-------------------  253 (354)
T 2pbi_B          193 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGD-------------------  253 (354)
T ss_dssp             ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS-------------------
T ss_pred             cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCC-------------------
Confidence            9999999999998887788999999999999999999888878877777777777666665                   


Q ss_pred             CCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccc
Q 001295          578 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDAS  657 (1106)
Q Consensus       578 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  657 (1106)
                        +|++++.|+.|++||+++++.+..+..+.....+.+++|+|++++|++|+.|+.|++||+.++. .+..+        
T Consensus       254 --~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~-~~~~l--------  322 (354)
T 2pbi_B          254 --AFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS-RVSIL--------  322 (354)
T ss_dssp             --EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS-EEEEE--------
T ss_pred             --EEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCc-eEEEE--------
Confidence              7999999999999999999888877655544568899999999999999999999999987662 11111        


Q ss_pred             cCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceeccc
Q 001295          658 RTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL  737 (1106)
Q Consensus       658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~  737 (1106)
                                                                                                      
T Consensus       323 --------------------------------------------------------------------------------  322 (354)
T 2pbi_B          323 --------------------------------------------------------------------------------  322 (354)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CccccccceEEEEEcCCCceEEEeecCceEEEee
Q 001295          738 PENLRATKISRLIFTNSGNAILALASNAIHLLWK  771 (1106)
Q Consensus       738 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~  771 (1106)
                        .+|...|.+++|+|++++|++++.|+.|++|+
T Consensus       323 --~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          323 --FGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             --CCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             --ECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence              13778999999999999999999999999995

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=8.1e-39  Score=351.93  Aligned_cols=287  Identities=22%  Similarity=0.330  Sum_probs=247.6

Q ss_pred             eeccccCCeeEEEEcCC----CCceEEEEecCCCcEEEEeCCCCce--eEEEeccCCCeEEEeccccCCceEEEEEecCC
Q 001295          452 EIDAHVGGVNDIAFSHP----NKQLCVITCGDDKTIKVWDATNGAK--QYIFEGHEAPVYSVCPHHKENIQFIFSTALDG  525 (1106)
Q Consensus       452 ~l~~h~~~V~~~~~s~d----~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg  525 (1106)
                      .+.+|.+.|++++|+|+    +.  +|+||+.|++|+|||+.+++.  ...+.+|...|.+++|+++  +.++++++.|+
T Consensus        27 ~~~~H~~~V~~v~~~~~~~~~~~--~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~--~~~l~s~s~D~  102 (321)
T 3ow8_A           27 QEQAHDDAIWSVAWGTNKKENSE--TVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHT--LPIAASSSLDA  102 (321)
T ss_dssp             ETTSSSSCEEEEEEC-------C--EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSS--SSEEEEEETTS
T ss_pred             ecccCCCcEEEEEEecCCCCCCC--EEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCC--CCEEEEEeCCC
Confidence            46789999999999985    45  799999999999999987754  4578999999999998654  47999999999


Q ss_pred             eEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEc
Q 001295          526 KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID  605 (1106)
Q Consensus       526 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  605 (1106)
                      +|++||+.++.....+..+...+.+++|+|++                     ++|++++.|+.|++|++.+++....+.
T Consensus       103 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg---------------------~~l~~g~~dg~v~i~~~~~~~~~~~~~  161 (321)
T 3ow8_A          103 HIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS---------------------QYLATGTHVGKVNIFGVESGKKEYSLD  161 (321)
T ss_dssp             EEEEEETTTTEEEEEEECCTTCCCCEEECTTS---------------------SEEEEECTTSEEEEEETTTCSEEEEEE
T ss_pred             cEEEEECCCCCEEEEEeCCCccEEEEEECCCC---------------------CEEEEEcCCCcEEEEEcCCCceeEEec
Confidence            99999999877776666665555555555554                     589999999999999999999888887


Q ss_pred             cCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhccccccc
Q 001295          606 ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLAD  685 (1106)
Q Consensus       606 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  685 (1106)
                      .+.  ..+.+++|+|++++|++|+.||.|++||+.++. .+..                                     
T Consensus       162 ~~~--~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~-~~~~-------------------------------------  201 (321)
T 3ow8_A          162 TRG--KFILSIAYSPDGKYLASGAIDGIINIFDIATGK-LLHT-------------------------------------  201 (321)
T ss_dssp             CSS--SCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEE-------------------------------------
T ss_pred             CCC--ceEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-EEEE-------------------------------------
Confidence            664  478999999999999999999999999986651 1000                                     


Q ss_pred             ccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCc
Q 001295          686 RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNA  765 (1106)
Q Consensus       686 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  765 (1106)
                                                                                                      
T Consensus       202 --------------------------------------------------------------------------------  201 (321)
T 3ow8_A          202 --------------------------------------------------------------------------------  201 (321)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCcee
Q 001295          766 IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM  844 (1106)
Q Consensus       766 ~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~  844 (1106)
                                                            +.  +|...|.+++|+|++++|++++ |++|++||+.+++..
T Consensus       202 --------------------------------------~~--~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~  241 (321)
T 3ow8_A          202 --------------------------------------LE--GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLA  241 (321)
T ss_dssp             --------------------------------------EC--CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEE
T ss_pred             --------------------------------------Ec--ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCccee
Confidence                                                  00  1667788999999999999998 899999999999999


Q ss_pred             eeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCC
Q 001295          845 ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD  924 (1106)
Q Consensus       845 ~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~  924 (1106)
                      ..+.+|...|.+++|+| ++++|++|+.||+|++||+.+++++..+.+|.+.|++++|+|++++|++++.|++|++||..
T Consensus       242 ~~~~~h~~~v~~~~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          242 GTLSGHASWVLNVAFCP-DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             EEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             EEEcCCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            99999999999999999 89999999999999999999999999999999999999999999999999999999999963

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.9e-38  Score=348.93  Aligned_cols=287  Identities=18%  Similarity=0.296  Sum_probs=249.6

Q ss_pred             cCCCCcCeEEEEEccC----CCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcE
Q 001295          408 VKDPGVSVNRVIWSPD----GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI  483 (1106)
Q Consensus       408 ~~~h~~~V~~l~~spd----g~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i  483 (1106)
                      +.+|.+.|++++|+|+    +++|++|+.|++|+|||+.+++. .....+.+|...|.+++|++++.  ++++++.|++|
T Consensus        28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-~~~~~l~gh~~~v~~~~~~~~~~--~l~s~s~D~~i  104 (321)
T 3ow8_A           28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-DLQWSLEGHQLGVVSVDISHTLP--IAASSSLDAHI  104 (321)
T ss_dssp             TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECSSSS--EEEEEETTSEE
T ss_pred             cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-eeeeeeccCCCCEEEEEECCCCC--EEEEEeCCCcE
Confidence            5799999999999985    67999999999999999987653 23346889999999999999999  89999999999


Q ss_pred             EEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEe
Q 001295          484 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG  563 (1106)
Q Consensus       484 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~  563 (1106)
                      ++||+.+++.+..+..|...+.+++|++  ++++|++++.||.|++||+++......+..+...+.+++|+|+++     
T Consensus       105 ~lWd~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~-----  177 (321)
T 3ow8_A          105 RLWDLENGKQIKSIDAGPVDAWTLAFSP--DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGK-----  177 (321)
T ss_dssp             EEEETTTTEEEEEEECCTTCCCCEEECT--TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSS-----
T ss_pred             EEEECCCCCEEEEEeCCCccEEEEEECC--CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCC-----
Confidence            9999999999999999999999999865  457999999999999999998887777777666666666666554     


Q ss_pred             eeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCc
Q 001295          564 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI  643 (1106)
Q Consensus       564 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~  643 (1106)
                                      +|++++.|+.|++||+.+++.+..+..+  ...|.+++|+|++++|++|+.|+.|++||+.++.
T Consensus       178 ----------------~lasg~~dg~i~iwd~~~~~~~~~~~~h--~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~  239 (321)
T 3ow8_A          178 ----------------YLASGAIDGIINIFDIATGKLLHTLEGH--AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN  239 (321)
T ss_dssp             ----------------EEEEEETTSCEEEEETTTTEEEEEECCC--SSCCCEEEECTTSCEEEEECTTSCEEEEETTTCC
T ss_pred             ----------------EEEEEcCCCeEEEEECCCCcEEEEEccc--CCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcc
Confidence                            8999999999999999999999998866  4479999999999999999999999999986541


Q ss_pred             hhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEec
Q 001295          644 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL  723 (1106)
Q Consensus       644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~  723 (1106)
                       ....                                                                           
T Consensus       240 -~~~~---------------------------------------------------------------------------  243 (321)
T 3ow8_A          240 -LAGT---------------------------------------------------------------------------  243 (321)
T ss_dssp             -EEEE---------------------------------------------------------------------------
T ss_pred             -eeEE---------------------------------------------------------------------------
Confidence             0000                                                                           


Q ss_pred             CCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccc
Q 001295          724 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND  803 (1106)
Q Consensus       724 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  803 (1106)
                                                                                                      
T Consensus       244 --------------------------------------------------------------------------------  243 (321)
T 3ow8_A          244 --------------------------------------------------------------------------------  243 (321)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEe
Q 001295          804 VTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV  881 (1106)
Q Consensus       804 ~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~  881 (1106)
                      +  .+|...|.+++|+|++++|++++ |++|++||+.+++++.++.+|...|.+++|+| ++++|++++.||.|+|||.
T Consensus       244 ~--~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~-~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          244 L--SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNG-NGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             E--CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTCCEEEEEC
T ss_pred             E--cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEeC
Confidence            0  01777889999999999999998 89999999999999999999999999999999 8999999999999999996

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-38  Score=367.89  Aligned_cols=339  Identities=15%  Similarity=0.195  Sum_probs=274.1

Q ss_pred             CCCCcCeEEEEEccCCC-EEEEEeCCCeEEEEEc----cCCce------eeee-eeec------cccCCeeEEEEcCCCC
Q 001295          409 KDPGVSVNRVIWSPDGS-LFGVAYSRHIVQIYSY----HGGDE------VRQH-LEID------AHVGGVNDIAFSHPNK  470 (1106)
Q Consensus       409 ~~h~~~V~~l~~spdg~-~las~~~d~~v~iwd~----~~~~~------~~~~-~~l~------~h~~~V~~~~~s~d~~  470 (1106)
                      ..|.+.|.+++|+|+|+ +||+|+.|+.|++||+    .+++.      ...+ ..+.      +|.+.|.+++|+|+++
T Consensus        42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  121 (425)
T 1r5m_A           42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN  121 (425)
T ss_dssp             EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred             eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence            45668999999999999 9999999999999999    88772      2211 1111      2688999999999999


Q ss_pred             ceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCe---
Q 001295          471 QLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW---  547 (1106)
Q Consensus       471 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---  547 (1106)
                        +|++|+.|+.|++|| .+++.+..+.+|...|.+++|++  ++.+|++++.||.|++||+.+......+..+...   
T Consensus       122 --~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  196 (425)
T 1r5m_A          122 --SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNK--DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSS  196 (425)
T ss_dssp             --EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECT--TSSEEEEEETTCCEEEEETTTTEEEEEECCC------
T ss_pred             --EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECC--CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccc
Confidence              899999999999999 78888999999999999999865  4579999999999999999988777766665543   


Q ss_pred             eEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEE
Q 001295          548 CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAV  627 (1106)
Q Consensus       548 v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~  627 (1106)
                      +....+.+++.         .+..+.|++++ .+++++.++.|++||+.+++.+..+..+  ...|.+++|+|++++|++
T Consensus       197 ~~~~~~~~~~~---------~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~  264 (425)
T 1r5m_A          197 INAENHSGDGS---------LGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGH--HGPISVLEFNDTNKLLLS  264 (425)
T ss_dssp             ---------CC---------CBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCC--SSCEEEEEEETTTTEEEE
T ss_pred             eeeccccCCcc---------eeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccC--CCceEEEEECCCCCEEEE
Confidence            11111112111         24455555543 4889999999999999999998888766  447999999999999999


Q ss_pred             EeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCC
Q 001295          628 STNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVK  707 (1106)
Q Consensus       628 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  707 (1106)
                      ++.||.|++||+.++. ....                                                           
T Consensus       265 ~~~d~~i~i~d~~~~~-~~~~-----------------------------------------------------------  284 (425)
T 1r5m_A          265 ASDDGTLRIWHGGNGN-SQNC-----------------------------------------------------------  284 (425)
T ss_dssp             EETTSCEEEECSSSBS-CSEE-----------------------------------------------------------
T ss_pred             EcCCCEEEEEECCCCc-cceE-----------------------------------------------------------
Confidence            9999999999876541 0000                                                           


Q ss_pred             ccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCcccccc
Q 001295          708 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASV  787 (1106)
Q Consensus       708 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~  787 (1106)
                                                                                                      
T Consensus       285 --------------------------------------------------------------------------------  284 (425)
T 1r5m_A          285 --------------------------------------------------------------------------------  284 (425)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCce
Q 001295          788 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI  866 (1106)
Q Consensus       788 ~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~  866 (1106)
                                      +  ..|...|.+++|+|++ ++++++ |+.|++||+.+++.+..+..|...|.+++|+| ++++
T Consensus       285 ----------------~--~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~-~~~~  344 (425)
T 1r5m_A          285 ----------------F--YGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ-DGQK  344 (425)
T ss_dssp             ----------------E--CCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECT-TSSE
T ss_pred             ----------------e--cCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcC-CCCE
Confidence                            0  0156678889999988 778777 89999999999999999999999999999999 8999


Q ss_pred             EEEeeCCCcEEEEEeecce--------------------EEEEecCccc--CeeEEEEecCCCEEEEEcCCCcEEEEeCC
Q 001295          867 IAIGMDDSSIQIYNVRVDE--------------------VKSKLKGHSK--RITGLAFSHALNVLVSSGADSQLCVWSSD  924 (1106)
Q Consensus       867 la~g~~dg~v~iwd~~~~~--------------------~~~~l~~h~~--~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~  924 (1106)
                      |++++.||.|++||+.+++                    ++..+.+|..  .|++++|+|++++|++++.||.|++|+++
T Consensus       345 l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          345 YAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             EEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             EEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence            9999999999999999988                    8999999977  99999999999999999999999999986

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=6e-38  Score=349.05  Aligned_cols=286  Identities=14%  Similarity=0.259  Sum_probs=245.5

Q ss_pred             eeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEE
Q 001295          450 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA  529 (1106)
Q Consensus       450 ~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i  529 (1106)
                      ..++.+|.+.|.+++|+|+++  +|++|+.|++|++||+.+++.+..+..|...|.+++|++  ++.+|++|+.|+.|++
T Consensus        48 ~~~l~gH~~~v~~~~~s~d~~--~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~s~~~d~~v~i  123 (340)
T 1got_B           48 RRTLRGHLAKIYAMHWGTDSR--LLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP--SGNYVACGGLDNICSI  123 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSS--EEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECT--TSSEEEEEETTCEEEE
T ss_pred             heeecCCCCceEEEEECCCCC--EEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECC--CCCEEEEEeCCCeEEE
Confidence            346889999999999999999  899999999999999999999999999999999999866  4579999999999999


Q ss_pred             EeCCCCCc----eeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEc
Q 001295          530 WLYDNLGS----RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID  605 (1106)
Q Consensus       530 wd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  605 (1106)
                      ||+.+...    ...+..|...+.++.|++++.                      +++++.|+.|++||+.+++.+..+.
T Consensus       124 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~----------------------l~s~s~d~~i~~wd~~~~~~~~~~~  181 (340)
T 1got_B          124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ----------------------IVTSSGDTTCALWDIETGQQTTTFT  181 (340)
T ss_dssp             EETTTCSBSCEEEEEEECCSSCEEEEEEEETTE----------------------EEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             EECccCCCcceeEEEecCCCccEEEEEECCCCc----------------------EEEEECCCcEEEEECCCCcEEEEEc
Confidence            99987542    234556666677777666654                      8999999999999999999999988


Q ss_pred             cCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhccccccc
Q 001295          606 ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLAD  685 (1106)
Q Consensus       606 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  685 (1106)
                      +|  ...|.+++|+|+++++++|+.|+.|++||+.++. ....                                     
T Consensus       182 ~h--~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~-~~~~-------------------------------------  221 (340)
T 1got_B          182 GH--TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM-CRQT-------------------------------------  221 (340)
T ss_dssp             CC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS-EEEE-------------------------------------
T ss_pred             CC--CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCe-eEEE-------------------------------------
Confidence            66  4479999999999999999999999999986551 0000                                     


Q ss_pred             ccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCc
Q 001295          686 RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNA  765 (1106)
Q Consensus       686 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  765 (1106)
                                                                                                      
T Consensus       222 --------------------------------------------------------------------------------  221 (340)
T 1got_B          222 --------------------------------------------------------------------------------  221 (340)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCcee
Q 001295          766 IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM  844 (1106)
Q Consensus       766 ~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~  844 (1106)
                                                            +  .+|...|.+++|+|++++|++++ ||+|++||+.+++.+
T Consensus       222 --------------------------------------~--~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~  261 (340)
T 1got_B          222 --------------------------------------F--TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL  261 (340)
T ss_dssp             --------------------------------------E--CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             --------------------------------------E--cCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEE
Confidence                                                  0  01666788888888888888888 788888888877766


Q ss_pred             eeecC--CCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEe
Q 001295          845 ATFMP--PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS  922 (1106)
Q Consensus       845 ~~~~~--~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd  922 (1106)
                      ..+..  +...|++++|+| ++++|++|+.||.|++||+.+++.+..+.+|.+.|++++|+|||.+|+||+.|++|+|||
T Consensus       262 ~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          262 MTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEECCTTCCSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEccCCcccceEEEEECC-CCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            66542  334799999999 999999999999999999999999999999999999999999999999999999999997

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=6.4e-38  Score=345.11  Aligned_cols=303  Identities=20%  Similarity=0.271  Sum_probs=247.0

Q ss_pred             eeec-cCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc
Q 001295          344 TRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  422 (1106)
Q Consensus       344 ~~~~-~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp  422 (1106)
                      ..++ +|.+.|++++|+|++..+|++|+.|++|++||+.+........+              ..+.+|...|.+++|+|
T Consensus        10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~--------------~~~~~h~~~v~~~~~s~   75 (319)
T 3frx_A           10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPV--------------RSFKGHSHIVQDCTLTA   75 (319)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEE--------------EEEECCSSCEEEEEECT
T ss_pred             EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccc--------------eEEeCCcccEEEEEECC
Confidence            3344 49999999999998744799999999999999875433211111              14689999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCC
Q 001295          423 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA  502 (1106)
Q Consensus       423 dg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~  502 (1106)
                      +|++|++|+.|++|+|||+.+++.+.   .+.+|...|.+++|+|++.  +|++|+.|++|++||++ ++++..+.+|..
T Consensus        76 dg~~l~s~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~  149 (319)
T 3frx_A           76 DGAYALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIK-GQCLATLLGHND  149 (319)
T ss_dssp             TSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETT-SCEEEEECCCSS
T ss_pred             CCCEEEEEeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECC-CCeEEEEeccCC
Confidence            99999999999999999999988665   6889999999999999999  89999999999999985 667889999999


Q ss_pred             CeEEEeccccC----CceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCC
Q 001295          503 PVYSVCPHHKE----NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK  578 (1106)
Q Consensus       503 ~v~~~~~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~  578 (1106)
                      .|.++.+.+..    ++..+++++.|+.|++||+++......+..|...|.+++|+|+++                    
T Consensus       150 ~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~--------------------  209 (319)
T 3frx_A          150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT--------------------  209 (319)
T ss_dssp             CEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSS--------------------
T ss_pred             cEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCC--------------------
Confidence            99999987643    345899999999999999998777777777777777776666665                    


Q ss_pred             CEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhccccccccc
Q 001295          579 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASR  658 (1106)
Q Consensus       579 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  658 (1106)
                       +|++++.|+.|++||+.+++.+..+..+   ..|.+++|+|++.++++++.+ .+++|++... .....+..+...   
T Consensus       210 -~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~-~~~~~~~~~~~~---  280 (319)
T 3frx_A          210 -LIASAGKDGEIMLWNLAAKKAMYTLSAQ---DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQ-YLVDDLRPEFAG---  280 (319)
T ss_dssp             -EEEEEETTCEEEEEETTTTEEEEEEECC---SCEEEEEECSSSSEEEEEETT-EEEEEEETTE-EEEEEECCCCTT---
T ss_pred             -EEEEEeCCCeEEEEECCCCcEEEEecCC---CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcC-eeeeccCccccc---
Confidence             7999999999999999999999888754   359999999999999998865 5999998765 222111100000   


Q ss_pred             CCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccC
Q 001295          659 TSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLP  738 (1106)
Q Consensus       659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~  738 (1106)
                                                                                                     .
T Consensus       281 -------------------------------------------------------------------------------~  281 (319)
T 3frx_A          281 -------------------------------------------------------------------------------Y  281 (319)
T ss_dssp             -------------------------------------------------------------------------------C
T ss_pred             -------------------------------------------------------------------------------c
Confidence                                                                                           0


Q ss_pred             ccccccceEEEEEcCCCceEEEeecCceEEEeeccc
Q 001295          739 ENLRATKISRLIFTNSGNAILALASNAIHLLWKWQR  774 (1106)
Q Consensus       739 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~  774 (1106)
                      ...+...+.+++|+|+|++|++++.||.|++|++.+
T Consensus       282 ~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t  317 (319)
T 3frx_A          282 SKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT  317 (319)
T ss_dssp             CGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred             ccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence            012566789999999999999999999999999763

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1e-37  Score=341.13  Aligned_cols=252  Identities=21%  Similarity=0.357  Sum_probs=217.9

Q ss_pred             eeecc-CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc
Q 001295          344 TRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  422 (1106)
Q Consensus       344 ~~~~~-h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp  422 (1106)
                      ..++. |.+.|++++|||+|++ |++|+.||+|+|||+.+++.+..                   +..|...|.+++|+|
T Consensus         6 ~~~~~~h~~~V~~~~fsp~~~~-l~s~~~dg~v~lWd~~~~~~~~~-------------------~~~~~~~v~~~~~~~   65 (304)
T 2ynn_A            6 KKTFSNRSDRVKGIDFHPTEPW-VLTTLYSGRVELWNYETQVEVRS-------------------IQVTETPVRAGKFIA   65 (304)
T ss_dssp             EEEEEEECSCEEEEEECSSSSE-EEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEEEG
T ss_pred             EEeecCCCCceEEEEECCCCCE-EEEEcCCCcEEEEECCCCceeEE-------------------eeccCCcEEEEEEeC
Confidence            34444 9999999999999995 99999999999999999877653                   678999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCC-ceeEEEeccC
Q 001295          423 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHE  501 (1106)
Q Consensus       423 dg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~  501 (1106)
                      ++++|++|+.|++|++||+.+++.+.   .+.+|.+.|.+++|+|+++  +|++|+.|++|++||++++ .....+.+|.
T Consensus        66 ~~~~l~s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~  140 (304)
T 2ynn_A           66 RKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHE  140 (304)
T ss_dssp             GGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECCCC
T ss_pred             CCCEEEEECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhcccC
Confidence            99999999999999999999988665   6889999999999999999  8999999999999999987 4557889999


Q ss_pred             CCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeC-CCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCE
Q 001295          502 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA-PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR  580 (1106)
Q Consensus       502 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~  580 (1106)
                      ..|.+++|+|. ++.+|++|+.|++|++||++.......+.. +...+..+.+++.                   +++.+
T Consensus       141 ~~v~~v~~~p~-~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-------------------~~~~~  200 (304)
T 2ynn_A          141 HFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL-------------------PDKPY  200 (304)
T ss_dssp             SCEEEEEECTT-CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCS-------------------TTCCE
T ss_pred             CcEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEc-------------------CCCCE
Confidence            99999999764 346899999999999999987665554432 3344555554432                   24568


Q ss_pred             EEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295          581 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       581 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                      +++++.|+.|++||+.+++++..+.+|.  ..|.+++|+|++++|++|+.||+|++||..++
T Consensus       201 l~s~s~D~~i~iWd~~~~~~~~~~~~h~--~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~  260 (304)
T 2ynn_A          201 MITASDDLTIKIWDYQTKSCVATLEGHM--SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY  260 (304)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECCS--SCEEEEEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred             EEEEcCCCeEEEEeCCCCccceeeCCCC--CCEEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence            9999999999999999999999998774  47999999999999999999999999998776

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.8e-38  Score=353.47  Aligned_cols=319  Identities=15%  Similarity=0.202  Sum_probs=230.4

Q ss_pred             ccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCcccccc
Q 001295          708 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASV  787 (1106)
Q Consensus       708 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~  787 (1106)
                      .++.++.+.....|++.....           ..|...|.+++|+|||++|++++.|.. ++||..              
T Consensus        18 ~~~~~~g~~~~~~w~~p~~~p-----------~~H~~~V~~v~fSpDG~~las~s~d~~-~~wd~~--------------   71 (357)
T 4g56_B           18 LYFQSNGSSKGSAWGRPVTAP-----------ACMEVQIGAVRYRRDGALLLAASSLSS-RTWGGS--------------   71 (357)
T ss_dssp             ---------------------------------CCCSEEEEEEECSSSCEEEEEECSSS-SSCCEE--------------
T ss_pred             eEEecCCCccccccCCCCCCc-----------ccccCCEEEEEECCCCCEEEEEcCCCC-ccccCe--------------
Confidence            445555567778888753211           348899999999999999999998532 344321              


Q ss_pred             CccccCCCCCCccccc-cCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCCceee----eecCCCCCeeEEEEecC
Q 001295          788 APQLWQPPSGIMMTND-VTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMA----TFMPPPPAATFLAFHPQ  862 (1106)
Q Consensus       788 ~~~~w~~~~~~~~~~~-~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~----~~~~~~~~v~~l~~s~~  862 (1106)
                       +.+|+..++...... ....+|...|.+++|+|++++++++.||+|+|||+.+++...    ...+|...|++++|+| 
T Consensus        72 -v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-  149 (357)
T 4g56_B           72 -IWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-  149 (357)
T ss_dssp             -EEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-
T ss_pred             -EEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-
Confidence             234444444321111 111237888999999999987776669999999998876543    3457899999999999 


Q ss_pred             CCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCC-EEEEEcCCCcEEEEeCCCcccccceeecccCCCC
Q 001295          863 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT  941 (1106)
Q Consensus       863 d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~-~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~  941 (1106)
                      ++++|++|+.||.|++||+.+++++..+.+|...|++++|++++. ++++++.|++|++||+.+++.......   ..+ 
T Consensus       150 dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~---~~~-  225 (357)
T 4g56_B          150 DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF---CAS-  225 (357)
T ss_dssp             SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCC---TTC-
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeee---ccc-
Confidence            899999999999999999999999999999999999999999875 789999999999999998654322111   111 


Q ss_pred             CCCCCCceEEEcCCC-cEEEE-EeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCC-CEEEEEEcCCeEEEEEcCC
Q 001295          942 PTAQSDTRVQFHQDQ-IHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDS-QLVYACFLDATVCVFSAAN 1018 (1106)
Q Consensus       942 ~~~~~i~~~~~s~dg-~~l~~-~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~-~~l~t~s~Dg~i~vwd~~~ 1018 (1106)
                        ...+.+++|+|++ .+|++ +.|+.|++||+.+++++..+.  +|...|++++|+|++ ++||+|+.|++|+|||+.+
T Consensus       226 --~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~--~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~  301 (357)
T 4g56_B          226 --DTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA--VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF  301 (357)
T ss_dssp             --CSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC--CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS
T ss_pred             --cccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe--ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC
Confidence              1367899999985 56777 478999999999999888876  889999999999987 5799999999999999999


Q ss_pred             ceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCC
Q 001295         1019 LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus      1019 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
                      ++.+..+.        | ...|.  +++|+|.|+.+|++++.||+|++|++.+..
T Consensus       302 ~~~~~~~~--------H-~~~V~--~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~  345 (357)
T 4g56_B          302 SEVFRDLS--------H-RDFVT--GVAWSPLDHSKFTTVGWDHKVLHHHLPSEG  345 (357)
T ss_dssp             CEEEEECC--------C-SSCEE--EEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred             CcEeEECC--------C-CCCEE--EEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence            98876542        3 33366  899999889999999999999999997654

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.4e-37  Score=346.75  Aligned_cols=208  Identities=16%  Similarity=0.236  Sum_probs=173.5

Q ss_pred             ccCCCCc-CeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEE
Q 001295          407 LVKDPGV-SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV  485 (1106)
Q Consensus       407 ~~~~h~~-~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~i  485 (1106)
                      .+.+|.. .|++++|+|+|++||+|+.|++|+|||+.++..........+|...|.+++|+|+++  +|++|+.|++|++
T Consensus        10 ~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~--~l~s~s~D~~v~i   87 (345)
T 3fm0_A           10 RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN--YLASASFDATTCI   87 (345)
T ss_dssp             EECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSS--EEEEEETTSCEEE
T ss_pred             eecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCC--EEEEEECCCcEEE
Confidence            4678887 999999999999999999999999999998765443334578999999999999999  8999999999999


Q ss_pred             EeCCCC--ceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCce---eEeeCCCCeeEEEEEecCCCeE
Q 001295          486 WDATNG--AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR---VDYEAPGRWCTTMAYSADGTRT  560 (1106)
Q Consensus       486 wd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~s~~~~~~  560 (1106)
                      ||+.++  +++..+.+|...|.+++|++  ++++|++|+.|+.|++||++.....   ..+..|...|.+++|       
T Consensus        88 w~~~~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~-------  158 (345)
T 3fm0_A           88 WKKNQDDFECVTTLEGHENEVKSVAWAP--SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVW-------  158 (345)
T ss_dssp             EEECCC-EEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEE-------
T ss_pred             EEccCCCeEEEEEccCCCCCceEEEEeC--CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEE-------
Confidence            998876  45788999999999999976  4579999999999999999875432   234445555555555       


Q ss_pred             EEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCccee--EEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEE
Q 001295          561 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL--TSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA  638 (1106)
Q Consensus       561 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd  638 (1106)
                                    +|++.+|++++.|+.|++||..+++..  ..+.+|  ...|.+++|+|+|++|++++.|++|++|+
T Consensus       159 --------------~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h--~~~v~~l~~sp~g~~l~s~s~D~~v~iW~  222 (345)
T 3fm0_A          159 --------------HPSQELLASASYDDTVKLYREEEDDWVCCATLEGH--ESTVWSLAFDPSGQRLASCSDDRTVRIWR  222 (345)
T ss_dssp             --------------CSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             --------------CCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCC--CCceEEEEECCCCCEEEEEeCCCeEEEec
Confidence                          455558999999999999999887644  455544  56899999999999999999999999998


Q ss_pred             ccC
Q 001295          639 TSD  641 (1106)
Q Consensus       639 ~~~  641 (1106)
                      ...
T Consensus       223 ~~~  225 (345)
T 3fm0_A          223 QYL  225 (345)
T ss_dssp             EEC
T ss_pred             ccc
Confidence            643

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.2e-37  Score=338.39  Aligned_cols=289  Identities=20%  Similarity=0.278  Sum_probs=248.1

Q ss_pred             eeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEE
Q 001295          451 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW  530 (1106)
Q Consensus       451 ~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw  530 (1106)
                      .++.+|.+.|.+++|+|+++  +|++|+.||+|++||+.++..+..+.+|..+|.+++|+++.  ++|++|+.|+.|++|
T Consensus         7 ~~~~~h~~~V~~~~fsp~~~--~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~s~s~d~~i~vw   82 (304)
T 2ynn_A            7 KTFSNRSDRVKGIDFHPTEP--WVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARK--NWIIVGSDDFRIRVF   82 (304)
T ss_dssp             EEEEEECSCEEEEEECSSSS--EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGG--TEEEEEETTSEEEEE
T ss_pred             EeecCCCCceEEEEECCCCC--EEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCC--CEEEEECCCCEEEEE
Confidence            36889999999999999999  89999999999999999999999999999999999987654  799999999999999


Q ss_pred             eCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCc-ceeEEEccCCC
Q 001295          531 LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV-QLLTSIDADGG  609 (1106)
Q Consensus       531 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~  609 (1106)
                      |+.+++....+..|...|.+++|+|+++                     ++++++.|++|++||+.++ .....+.+|  
T Consensus        83 d~~~~~~~~~~~~h~~~v~~~~~~~~~~---------------------~l~sgs~D~~v~lWd~~~~~~~~~~~~~h--  139 (304)
T 2ynn_A           83 NYNTGEKVVDFEAHPDYIRSIAVHPTKP---------------------YVLSGSDDLTVKLWNWENNWALEQTFEGH--  139 (304)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSSSS---------------------EEEEEETTSCEEEEEGGGTTEEEEEECCC--
T ss_pred             ECCCCcEEEEEeCCCCcEEEEEEcCCCC---------------------EEEEECCCCeEEEEECCCCcchhhhhccc--
Confidence            9999888888888888777777777665                     7999999999999999887 445566665  


Q ss_pred             CCCcCeEEEcc-CCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccc
Q 001295          610 LPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAA  688 (1106)
Q Consensus       610 ~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  688 (1106)
                      ...|.+++|+| ++.+|++|+.|++|++||+.++.... .                                        
T Consensus       140 ~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~-~----------------------------------------  178 (304)
T 2ynn_A          140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF-T----------------------------------------  178 (304)
T ss_dssp             CSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSE-E----------------------------------------
T ss_pred             CCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccc-e----------------------------------------
Confidence            45799999999 68999999999999999986541000 0                                        


Q ss_pred             cccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEE
Q 001295          689 SMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHL  768 (1106)
Q Consensus       689 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  768 (1106)
                                                                                           +          
T Consensus       179 ---------------------------------------------------------------------~----------  179 (304)
T 2ynn_A          179 ---------------------------------------------------------------------L----------  179 (304)
T ss_dssp             ---------------------------------------------------------------------E----------
T ss_pred             ---------------------------------------------------------------------e----------
Confidence                                                                                 0          


Q ss_pred             EeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEec--CCCEEEEEe-CCeEEEEEcCCCceee
Q 001295          769 LWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK--NDSYVMSAS-GGKISLFNMMTFKTMA  845 (1106)
Q Consensus       769 iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~--~~~~l~~~s-dg~i~vwd~~~~~~~~  845 (1106)
                                                         .  ..+...+..+.++|  ++++|++++ |++|++||+.+++++.
T Consensus       180 -----------------------------------~--~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~  222 (304)
T 2ynn_A          180 -----------------------------------T--TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA  222 (304)
T ss_dssp             -----------------------------------E--CCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEE
T ss_pred             -----------------------------------c--cCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccce
Confidence                                               0  01344566666665  678999998 8999999999999999


Q ss_pred             eecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCC--EEEEEcCCCcEEEEeC
Q 001295          846 TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN--VLVSSGADSQLCVWSS  923 (1106)
Q Consensus       846 ~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~--~l~s~s~Dg~i~vwd~  923 (1106)
                      ++.+|...|.+++|+| ++.+|++|+.||+|++||+.+++++..+..|...+.+++|+|++.  ++++|+.|| +.+|++
T Consensus       223 ~~~~h~~~v~~~~~~p-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~  300 (304)
T 2ynn_A          223 TLEGHMSNVSFAVFHP-TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSL  300 (304)
T ss_dssp             EEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEEC
T ss_pred             eeCCCCCCEEEEEECC-CCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEe
Confidence            9999999999999999 899999999999999999999999999999999999999999875  588887766 778887


Q ss_pred             CC
Q 001295          924 DG  925 (1106)
Q Consensus       924 ~~  925 (1106)
                      ..
T Consensus       301 ~~  302 (304)
T 2ynn_A          301 GN  302 (304)
T ss_dssp             C-
T ss_pred             cc
Confidence            65

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.8e-38  Score=354.94  Aligned_cols=322  Identities=14%  Similarity=0.181  Sum_probs=233.0

Q ss_pred             EEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeC-
Q 001295          354 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS-  432 (1106)
Q Consensus       354 ~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~-  432 (1106)
                      ..+.+.+++.  ++.++.+.....|++....                       ...|+..|.+++|||||++||+|+. 
T Consensus         9 sg~d~g~~~~--~~~~~g~~~~~~w~~p~~~-----------------------p~~H~~~V~~v~fSpDG~~las~s~d   63 (357)
T 4g56_B            9 SGVDLGTENL--YFQSNGSSKGSAWGRPVTA-----------------------PACMEVQIGAVRYRRDGALLLAASSL   63 (357)
T ss_dssp             --------------------------------------------------------CCCSEEEEEEECSSSCEEEEEECS
T ss_pred             cCCCCCccce--EEecCCCccccccCCCCCC-----------------------cccccCCEEEEEECCCCCEEEEEcCC
Confidence            4455666665  3444445777888875421                       3579999999999999999999997 


Q ss_pred             -----CCeEEEEEccCCceeee-eeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCcee----EEEeccCC
Q 001295          433 -----RHIVQIYSYHGGDEVRQ-HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ----YIFEGHEA  502 (1106)
Q Consensus       433 -----d~~v~iwd~~~~~~~~~-~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~----~~~~~h~~  502 (1106)
                           |+.|++|+..++..... .....+|...|.+++|+|+++   +++++.||+|+|||+.+++..    ....+|..
T Consensus        64 ~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~---~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~  140 (357)
T 4g56_B           64 SSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG---ILVASDSGAVELWEILEKESLLVNKFAKYEHDD  140 (357)
T ss_dssp             SSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE---EEEEETTSCEEEC--------CCCCEEECCCSS
T ss_pred             CCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC---EEEEECCCEEEEeeccccceeEEEeeccCCCCC
Confidence                 78899999887754322 123457899999999999986   567788999999999987754    34558999


Q ss_pred             CeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEE
Q 001295          503 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  582 (1106)
Q Consensus       503 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~  582 (1106)
                      .|.+++|++  ++++|++|+.|+.|++||++++.....+..|...|.+++|++++.                    ..++
T Consensus       141 ~V~~v~~sp--dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~--------------------~~~~  198 (357)
T 4g56_B          141 IVKTLSVFS--DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKD--------------------TIFL  198 (357)
T ss_dssp             CEEEEEECS--SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCS--------------------SCEE
T ss_pred             CEEEEEECC--CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCC--------------------ceee
Confidence            999999865  457999999999999999999888888888888888888888764                    2588


Q ss_pred             EEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccC-CCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCC
Q 001295          583 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD-GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE  661 (1106)
Q Consensus       583 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  661 (1106)
                      +++.|+.|++||+++++....+....+...+.+++|+|+ +.+|++|+.|+.|++||+.++ +..+.+            
T Consensus       199 s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-~~~~~~------------  265 (357)
T 4g56_B          199 SCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-DSAQTS------------  265 (357)
T ss_dssp             EEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG-GGCEEE------------
T ss_pred             eeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC-cEeEEE------------
Confidence            999999999999999988877766656667899999996 578999999999999998765 111100            


Q ss_pred             CCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccc
Q 001295          662 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL  741 (1106)
Q Consensus       662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~  741 (1106)
                                                                                                      
T Consensus       266 --------------------------------------------------------------------------------  265 (357)
T 4g56_B          266 --------------------------------------------------------------------------------  265 (357)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecC
Q 001295          742 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  821 (1106)
Q Consensus       742 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~  821 (1106)
                                                                                       ..|...|++++|+|+
T Consensus       266 -----------------------------------------------------------------~~~~~~v~~l~~sp~  280 (357)
T 4g56_B          266 -----------------------------------------------------------------AVHSQNITGLAYSYH  280 (357)
T ss_dssp             -----------------------------------------------------------------CCCSSCEEEEEECSS
T ss_pred             -----------------------------------------------------------------eccceeEEEEEEcCC
Confidence                                                                             015667888888887


Q ss_pred             C-CEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecc
Q 001295          822 D-SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD  884 (1106)
Q Consensus       822 ~-~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~  884 (1106)
                      + ++|++++ |++|+|||+.+++++..+ +|...|++++|+|.++.+||+|+.||+|++|++.+.
T Consensus       281 ~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          281 SSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             SSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred             CCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence            6 5788888 899999999988877655 699999999999877899999999999999999764

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=3.1e-38  Score=357.13  Aligned_cols=299  Identities=13%  Similarity=0.217  Sum_probs=244.6

Q ss_pred             ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEE
Q 001295          407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  486 (1106)
Q Consensus       407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw  486 (1106)
                      .+.+|.+.|++++|+|++++|++|+.|++|+|||+.+++...   .+.+|...|.+++|+|+++  +|++|+.|+.|++|
T Consensus        61 ~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~---~~~~h~~~v~~~~~s~~g~--~las~~~d~~v~iw  135 (380)
T 3iz6_a           61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH---AIKLHCPWVMECAFAPNGQ--SVACGGLDSACSIF  135 (380)
T ss_dssp             EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE---EEECCCTTCCCCEECTTSS--EEEECCSSSCCEEE
T ss_pred             cccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce---EEecCCCCEEEEEECCCCC--EEEEeeCCCcEEEE
Confidence            478999999999999999999999999999999999987655   6788999999999999999  89999999999999


Q ss_pred             eCCCCc-------eeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEe-----eCCCCeeEEEEEe
Q 001295          487 DATNGA-------KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-----EAPGRWCTTMAYS  554 (1106)
Q Consensus       487 d~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~s  554 (1106)
                      |+.+..       ....+.+|.+.|.++.|.+..+ ..|++|+.|++|++||+.++.....+     ..|...|.+++++
T Consensus       136 ~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~-~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~  214 (380)
T 3iz6_a          136 NLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQE-TRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN  214 (380)
T ss_dssp             ECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSS-SCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEEC
T ss_pred             ECCCCccccCCccceeeccCCCcceEEEEEecCCC-CEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEee
Confidence            987532       3456889999999999876543 57999999999999999987766555     3344445555544


Q ss_pred             cCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECC-CcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCc
Q 001295          555 ADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD-SVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG  633 (1106)
Q Consensus       555 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~  633 (1106)
                      +                    ++++++++|+.|+.|++||++ .++.+..+.+|  ...|.+++|+|++++|++|+.||+
T Consensus       215 ~--------------------~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h--~~~v~~v~~~p~~~~l~s~s~D~~  272 (380)
T 3iz6_a          215 S--------------------LNANMFISGSCDTTVRLWDLRITSRAVRTYHGH--EGDINSVKFFPDGQRFGTGSDDGT  272 (380)
T ss_dssp             S--------------------SSCCEEEEEETTSCEEEEETTTTCCCCEEECCC--SSCCCEEEECTTSSEEEEECSSSC
T ss_pred             c--------------------CCCCEEEEEECCCeEEEEECCCCCcceEEECCc--CCCeEEEEEecCCCeEEEEcCCCe
Confidence            3                    145589999999999999997 45777888766  457999999999999999999999


Q ss_pred             EEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCcccccc
Q 001295          634 IKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEE  713 (1106)
Q Consensus       634 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  713 (1106)
                      |++||+.++. .+..+..+                                                             
T Consensus       273 i~lwd~~~~~-~~~~~~~~-------------------------------------------------------------  290 (380)
T 3iz6_a          273 CRLFDMRTGH-QLQVYNRE-------------------------------------------------------------  290 (380)
T ss_dssp             EEEEETTTTE-EEEEECCC-------------------------------------------------------------
T ss_pred             EEEEECCCCc-EEEEeccc-------------------------------------------------------------
Confidence            9999997762 11111000                                                             


Q ss_pred             CCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccC
Q 001295          714 SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQ  793 (1106)
Q Consensus       714 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~  793 (1106)
                                                             +..                                      
T Consensus       291 ---------------------------------------~~~--------------------------------------  293 (380)
T 3iz6_a          291 ---------------------------------------PDR--------------------------------------  293 (380)
T ss_dssp             ---------------------------------------CSS--------------------------------------
T ss_pred             ---------------------------------------ccc--------------------------------------
Confidence                                                   000                                      


Q ss_pred             CCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeee----cCCCCCeeEEEEecCCCceEE
Q 001295          794 PPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATF----MPPPPAATFLAFHPQDNNIIA  868 (1106)
Q Consensus       794 ~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~----~~~~~~v~~l~~s~~d~~~la  868 (1106)
                                .  ..+...|++++|+|+|++|++|+ ||.|++||+.+++....+    .+|.+.|++++|+| ++++|+
T Consensus       294 ----------~--~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~  360 (380)
T 3iz6_a          294 ----------N--DNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSS-DGSALC  360 (380)
T ss_dssp             ----------S--CCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECS-SSSEEE
T ss_pred             ----------c--ccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECC-CCCEEE
Confidence                      0  01334578899999999999998 899999999888877766    67999999999999 999999


Q ss_pred             EeeCCCcEEEEEeecce
Q 001295          869 IGMDDSSIQIYNVRVDE  885 (1106)
Q Consensus       869 ~g~~dg~v~iwd~~~~~  885 (1106)
                      +|+.||+|+||++...+
T Consensus       361 sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          361 TGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             EECTTSCEEEEECCSSS
T ss_pred             EeeCCCCEEEEecCCCc
Confidence            99999999999987643

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=6.7e-38  Score=354.42  Aligned_cols=302  Identities=19%  Similarity=0.304  Sum_probs=250.3

Q ss_pred             ceeeec-cCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEE
Q 001295          342 TVTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW  420 (1106)
Q Consensus       342 ~~~~~~-~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~  420 (1106)
                      ...+++ +|.+.|++++|+|+|++ |++|+.||+|+|||+.+++....                   +.+|...|.+++|
T Consensus        57 ~~~~~l~gH~~~V~~~~~sp~~~~-l~s~s~D~~v~iWd~~~~~~~~~-------------------~~~h~~~v~~~~~  116 (380)
T 3iz6_a           57 VCCRTLQGHSGKVYSLDWTPEKNW-IVSASQDGRLIVWNALTSQKTHA-------------------IKLHCPWVMECAF  116 (380)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSC-EEEEETTSEEEEEETTTTEEEEE-------------------EECCCTTCCCCEE
T ss_pred             EEeecccccccEEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCccceE-------------------EecCCCCEEEEEE
Confidence            344444 49999999999999995 99999999999999999877653                   6789999999999


Q ss_pred             ccCCCEEEEEeCCCeEEEEEccCCce----eeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEE
Q 001295          421 SPDGSLFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI  496 (1106)
Q Consensus       421 spdg~~las~~~d~~v~iwd~~~~~~----~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~  496 (1106)
                      +|+|++||+|+.|+.|++||+.+...    ......+.+|.+.|.++.|+|++.. .|++|+.|++|++||+.+++.+..
T Consensus       117 s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~s~D~~i~~wd~~~~~~~~~  195 (380)
T 3iz6_a          117 APNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITGSGDQTCVLWDVTTGQRISI  195 (380)
T ss_dssp             CTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEECTTSCEEEECTTTCCEEEE
T ss_pred             CCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEECCCCcEEEEEcCCCcEEEE
Confidence            99999999999999999999975421    1122357899999999999998654 699999999999999999999988


Q ss_pred             E-----eccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCC-CCceeEeeCCCCeeEEEEEecCCCeEEEeeecccee
Q 001295          497 F-----EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG  570 (1106)
Q Consensus       497 ~-----~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~  570 (1106)
                      +     .+|...|.+++|++ .++.+|++|+.|+.|++||++. ......+..|...|.+++|+|+++            
T Consensus       196 ~~~~~~~~h~~~v~~~~~~~-~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~------------  262 (380)
T 3iz6_a          196 FGSEFPSGHTADVLSLSINS-LNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ------------  262 (380)
T ss_dssp             ECCCSSSSCCSCEEEEEECS-SSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSS------------
T ss_pred             eecccCCCCccCeEEEEeec-CCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCC------------
Confidence            8     68999999999864 3457999999999999999984 455566777777666666666654            


Q ss_pred             EEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCC-----CCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchh
Q 001295          571 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG-----LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL  645 (1106)
Q Consensus       571 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-----~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  645 (1106)
                               +|++++.|++|++||+.+++.+..+..+..     ...|.+++|+|+|++|++|+.||.|++||..++. .
T Consensus       263 ---------~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~-~  332 (380)
T 3iz6_a          263 ---------RFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAE-M  332 (380)
T ss_dssp             ---------EEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCC-E
T ss_pred             ---------eEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCc-e
Confidence                     799999999999999999999888765422     2348899999999999999999999999987652 1


Q ss_pred             hhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCC
Q 001295          646 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE  725 (1106)
Q Consensus       646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~  725 (1106)
                      ...+.                                                                           
T Consensus       333 ~~~~~---------------------------------------------------------------------------  337 (380)
T 3iz6_a          333 VLNLG---------------------------------------------------------------------------  337 (380)
T ss_dssp             EEEEC---------------------------------------------------------------------------
T ss_pred             EEEEe---------------------------------------------------------------------------
Confidence            11110                                                                           


Q ss_pred             CCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeecc
Q 001295          726 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQ  773 (1106)
Q Consensus       726 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  773 (1106)
                                 ....+|...|.+++|+|++++|++++.|+.|++|++.
T Consensus       338 -----------~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~  374 (380)
T 3iz6_a          338 -----------TLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS  374 (380)
T ss_dssp             -----------CSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred             -----------cccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence                       0002378899999999999999999999999999976

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=5.5e-38  Score=347.56  Aligned_cols=295  Identities=15%  Similarity=0.161  Sum_probs=229.3

Q ss_pred             cccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCC-ccccccCCCCCCCCeeEEEEec
Q 001295          742 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI-MMTNDVTDSNPEEAVPCFALSK  820 (1106)
Q Consensus       742 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~~~~~~~~~v~~l~~s~  820 (1106)
                      +...|.+++|+|||++|++++ |+++++|+....               +|+..... ..........+...|.+++|+|
T Consensus        29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~   92 (344)
T 4gqb_B           29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSLW---------------LFKDPCAAPNEGFCSAGVQTEAGVADLTWVG   92 (344)
T ss_dssp             CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEE---------------EESSGGGTTCGGGCSEEEEESSCEEEEEEET
T ss_pred             ccCCEEEEEECCCCCEEEEEe-CCceEEeeceee---------------eeccccccCCcceeeeeeccCCCEEEEEEeC
Confidence            567799999999999777665 778888874321               11111100 0000000012567899999999


Q ss_pred             CCCEEEEEe-CCeEEEEEcCCCceeee----ecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCccc
Q 001295          821 NDSYVMSAS-GGKISLFNMMTFKTMAT----FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK  895 (1106)
Q Consensus       821 ~~~~l~~~s-dg~i~vwd~~~~~~~~~----~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~  895 (1106)
                      ++ .|++|+ ||+|+|||+.+++.+..    +.+|...|++++|+| ++++|++|+.||+|++||+.+++++..+.+|.+
T Consensus        93 d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~  170 (344)
T 4gqb_B           93 ER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA  170 (344)
T ss_dssp             TT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred             CC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCC
Confidence            96 455666 99999999998876544    458999999999999 999999999999999999999999999999999


Q ss_pred             CeeEEEEecCC-CEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCC-CcEEEE-EeCCeEEEEec
Q 001295          896 RITGLAFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-QIHFLV-VHETQLAIFET  972 (1106)
Q Consensus       896 ~V~~l~~s~d~-~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~d-g~~l~~-~~d~~v~i~d~  972 (1106)
                      .|++++|++++ .+|++++.|++|++||+.+++....  +.. ..+.   ..+.+++|+|+ +++|++ +.|+.|++||+
T Consensus       171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~--~~~-~~~~---~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~  244 (344)
T 4gqb_B          171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQ--IGC-SAPG---YLPTSLAWHPQQSEVFVFGDENGTVSLVDT  244 (344)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEE--CC-----C---CCEEEEEECSSCTTEEEEEETTSEEEEEES
T ss_pred             ceEEEEecCCCCCceeeeccccccccccccccceeee--eec-ceee---ccceeeeecCCCCcceEEeccCCcEEEEEC
Confidence            99999999998 4789999999999999998664321  111 1111   35789999995 567777 57899999999


Q ss_pred             CCceEeeecccCCCCCCeeEEEECCCC-CEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCC
Q 001295          973 TKLECVKQWVPRESSAPITHATFSCDS-QLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1051 (1106)
Q Consensus       973 ~~~~~~~~~~~~~h~~~v~~l~~s~d~-~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d 1051 (1106)
                      ++++++..+.  +|...|++++|+||+ ++||+|+.|++|+|||+.+++++. +.       +|.. .|.  +++|+|++
T Consensus       245 ~~~~~~~~~~--~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~-------~H~~-~V~--~v~~sp~~  311 (344)
T 4gqb_B          245 KSTSCVLSSA--VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ-------AHRD-FVR--DATWSPLN  311 (344)
T ss_dssp             CC--CCEEEE--CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC-------CCSS-CEE--EEEECSSS
T ss_pred             CCCcEEEEEc--CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec-------CCCC-CEE--EEEEeCCC
Confidence            9999988876  899999999999998 579999999999999999998653 22       4433 366  89999965


Q ss_pred             CCEEEEEeCCCcEEEEeecCCC
Q 001295         1052 PNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus      1052 ~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
                      ..+|++++.||+|++|++.+..
T Consensus       312 ~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          312 HSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             TTEEEEEETTSCEEEEECCC--
T ss_pred             CeEEEEEcCCCeEEEEECCCCC
Confidence            5678899999999999998754

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=4.9e-37  Score=338.08  Aligned_cols=214  Identities=19%  Similarity=0.288  Sum_probs=184.2

Q ss_pred             ccCCCCcCeEEEEEccCC-CEEEEEeCCCeEEEEEccCCce--eeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcE
Q 001295          407 LVKDPGVSVNRVIWSPDG-SLFGVAYSRHIVQIYSYHGGDE--VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI  483 (1106)
Q Consensus       407 ~~~~h~~~V~~l~~spdg-~~las~~~d~~v~iwd~~~~~~--~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i  483 (1106)
                      .+.+|.+.|.+++|+|++ ++|++|+.|++|++|++.+...  -.....+.+|...|.+++|+|+++  +|++|+.|++|
T Consensus        12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~D~~v   89 (319)
T 3frx_A           12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTL   89 (319)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred             EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEeCCCEE
Confidence            478999999999999965 8999999999999999975332  223457889999999999999999  89999999999


Q ss_pred             EEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEe
Q 001295          484 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG  563 (1106)
Q Consensus       484 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~  563 (1106)
                      ++||+.+++.+..+.+|...|.+++|++  ++.+|++|+.|++|++||++. .....+..|...+.++.+.|.+.     
T Consensus        90 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~-----  161 (319)
T 3frx_A           90 RLWDVATGETYQRFVGHKSDVMSVDIDK--KASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEK-----  161 (319)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECT--TSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC-------
T ss_pred             EEEECCCCCeeEEEccCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCC-----
Confidence            9999999999999999999999999865  457999999999999999964 55667778888888888887654     


Q ss_pred             eeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295          564 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       564 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                                ..+++..+++++.|+.|++||+.+++....+.+|  ...|.+++|+|++++|++++.||.|++||+.++
T Consensus       162 ----------~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h--~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~  228 (319)
T 3frx_A          162 ----------ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH--NSNINTLTASPDGTLIASAGKDGEIMLWNLAAK  228 (319)
T ss_dssp             --------------CCEEEEEETTSCEEEEETTTTEEEEEECCC--CSCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred             ----------CCCCccEEEEEeCCCEEEEEECCcchhheeecCC--CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence                      2334567999999999999999999988888766  457999999999999999999999999998665

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-37  Score=356.90  Aligned_cols=365  Identities=11%  Similarity=0.140  Sum_probs=270.8

Q ss_pred             eeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEec----CCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEE
Q 001295          344 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEV----GSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI  419 (1106)
Q Consensus       344 ~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~----~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~  419 (1106)
                      .....|.+.|++++|+|+|+.+||+|+.||.|+|||+    .+++.+..... ...+.  ..........+|.+.|.+++
T Consensus        39 ~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~v~~~~  115 (425)
T 1r5m_A           39 LKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTI-IAELR--HPFALSASSGKTTNQVTCLA  115 (425)
T ss_dssp             CEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEE-EEEEE--CCCCCC------CBCEEEEE
T ss_pred             eeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccc-ccccc--ccccccccccCCCCceEEEE
Confidence            3344577999999999999934999999999999999    88773110000 00000  00000001234788999999


Q ss_pred             EccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEec
Q 001295          420 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG  499 (1106)
Q Consensus       420 ~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  499 (1106)
                      |+|++++|++++.||.|++|| .+++.+.   .+.+|...|.+++|+|+++  +|++++.|+.|++||+.+++.+..+..
T Consensus       116 ~s~~~~~l~~~~~dg~i~i~~-~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~  189 (425)
T 1r5m_A          116 WSHDGNSIVTGVENGELRLWN-KTGALLN---VLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGTVMQHFEL  189 (425)
T ss_dssp             ECTTSSEEEEEETTSCEEEEE-TTSCEEE---EECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTEEEEEECC
T ss_pred             EcCCCCEEEEEeCCCeEEEEe-CCCCeee---eccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCcEEEEeec
Confidence            999999999999999999999 4444444   5788999999999999999  899999999999999999999999988


Q ss_pred             cCCC---------------eEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEee
Q 001295          500 HEAP---------------VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF  564 (1106)
Q Consensus       500 h~~~---------------v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~  564 (1106)
                      +...               +.+++|++.   ..+++++.||.|++||+.+......+..+...+.+++|+|+++      
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~------  260 (425)
T 1r5m_A          190 KETGGSSINAENHSGDGSLGVDVEWVDD---DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNK------  260 (425)
T ss_dssp             C---------------CCCBSCCEEEET---TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTT------
T ss_pred             cccCccceeeccccCCcceeeEEEEcCC---CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCC------
Confidence            8777               888888764   3699999999999999999887777777777777777766665      


Q ss_pred             eccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCch
Q 001295          565 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR  644 (1106)
Q Consensus       565 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~  644 (1106)
                                     +|++++.|+.|++||+.+++.+..+..+  ...|.+++|+|++ ++++++.|+.|++||+.++ .
T Consensus       261 ---------------~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~-~  321 (425)
T 1r5m_A          261 ---------------LLLSASDDGTLRIWHGGNGNSQNCFYGH--SQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN-T  321 (425)
T ss_dssp             ---------------EEEEEETTSCEEEECSSSBSCSEEECCC--SSCEEEEEEETTT-EEEEEETTSEEEEEETTTT-E
T ss_pred             ---------------EEEEEcCCCEEEEEECCCCccceEecCC--CccEEEEEECCCC-EEEEEeCCCcEEEEECCCC-c
Confidence                           7999999999999999999999988765  4479999999999 9999999999999998765 2


Q ss_pred             hhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecC
Q 001295          645 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT  724 (1106)
Q Consensus       645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~  724 (1106)
                      .+..+                                                                           
T Consensus       322 ~~~~~---------------------------------------------------------------------------  326 (425)
T 1r5m_A          322 LLALS---------------------------------------------------------------------------  326 (425)
T ss_dssp             EEEEE---------------------------------------------------------------------------
T ss_pred             EeEec---------------------------------------------------------------------------
Confidence            11111                                                                           


Q ss_pred             CCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCcccccc
Q 001295          725 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV  804 (1106)
Q Consensus       725 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  804 (1106)
                                     ..|...|.+++|+|+++++++++.||.|++|++.....                      ..   
T Consensus       327 ---------------~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~----------------------~~---  366 (425)
T 1r5m_A          327 ---------------IVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNS----------------------KS---  366 (425)
T ss_dssp             ---------------ECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC---------------------------
T ss_pred             ---------------ccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCcc----------------------ce---
Confidence                           11456778888888888888888888888888653110                      00   


Q ss_pred             CCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeecCCCC--CeeEEEEecCCCceEEEeeCCCcEEEEEee
Q 001295          805 TDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPP--AATFLAFHPQDNNIIAIGMDDSSIQIYNVR  882 (1106)
Q Consensus       805 ~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~--~v~~l~~s~~d~~~la~g~~dg~v~iwd~~  882 (1106)
                               ..+.         ...++.   +.......+..+.+|..  .|++++|+| ++++|++++.||.|++||+.
T Consensus       367 ---------~~~~---------~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          367 ---------RSLY---------GNRDGI---LNPLPIPLYASYQSSQDNDYIFDLSWNC-AGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             ---------------------------------CEECCEEEEECCTTCCCCEEEEEECT-TSSEEEEEESSSCCEEEECC
T ss_pred             ---------eeee---------cccccc---cCcccchhhhhhcCcccCCceEEEEccC-CCceEEEEecCceEEEEeec
Confidence                     0000         001222   22223346778888866  999999999 89999999999999999975

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.6e-39  Score=369.36  Aligned_cols=332  Identities=13%  Similarity=0.187  Sum_probs=270.4

Q ss_pred             cCeEEEEEccCCC-EEEEE----------eCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCC
Q 001295          413 VSVNRVIWSPDGS-LFGVA----------YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK  481 (1106)
Q Consensus       413 ~~V~~l~~spdg~-~las~----------~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~  481 (1106)
                      ..|.+++|+|+|+ +|++|          +.|+.|+|||+.+++.......+ .|...|.+++|+|+++  +|++|+.|+
T Consensus        13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~--~l~~~~~dg   89 (416)
T 2pm9_A           13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNK--IIAGALDNG   89 (416)
T ss_dssp             EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSS--CEEEEESSS
T ss_pred             hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCC--eEEEEccCC
Confidence            3688999999997 99999          88999999999987643222233 5899999999999999  799999999


Q ss_pred             cEEEEeCCC----CceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCC------ceeEe---eCCCCee
Q 001295          482 TIKVWDATN----GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG------SRVDY---EAPGRWC  548 (1106)
Q Consensus       482 ~i~iwd~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~---~~~~~~v  548 (1106)
                      .|++||+.+    .+.+..+.+|...|.+++|+++. +.+|++++.||.|++||+.+..      ....+   ..+...+
T Consensus        90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v  168 (416)
T 2pm9_A           90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQ-DNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEV  168 (416)
T ss_dssp             CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSS-TTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCC
T ss_pred             eEEEeecccccccccchhhccCCccceEEEEEcCCC-CCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCe
Confidence            999999987    45788999999999999997652 4689999999999999998876      22222   3444555


Q ss_pred             EEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCC----CCCcCeEEEccCC-C
Q 001295          549 TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG----LPASPRIRFNKDG-C  623 (1106)
Q Consensus       549 ~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----~~~v~~v~~s~~~-~  623 (1106)
                      .+++|+|++                    +.++++++.|+.|++||+.+++.+..+..+..    ...+.+++|+|++ .
T Consensus       169 ~~~~~~~~~--------------------~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  228 (416)
T 2pm9_A          169 ISLAWNQSL--------------------AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNST  228 (416)
T ss_dssp             CEEEECSSC--------------------TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTT
T ss_pred             eEEEeCCCC--------------------CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCC
Confidence            555555552                    35799999999999999999999988876531    4579999999987 6


Q ss_pred             EEEEEeCCC---cEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCc
Q 001295          624 LLAVSTNDN---GIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDV  700 (1106)
Q Consensus       624 ~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  700 (1106)
                      ++++++.|+   .|++||+.++......                                                    
T Consensus       229 ~l~~~~~d~~~~~i~~~d~~~~~~~~~~----------------------------------------------------  256 (416)
T 2pm9_A          229 RVATATGSDNDPSILIWDLRNANTPLQT----------------------------------------------------  256 (416)
T ss_dssp             EEEEEECCSSSCCCCEEETTSTTSCSBC----------------------------------------------------
T ss_pred             EEEEEECCCCCceEEEEeCCCCCCCcEE----------------------------------------------------
Confidence            999999998   9999998664111000                                                    


Q ss_pred             cccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCC
Q 001295          701 RSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSS  780 (1106)
Q Consensus       701 ~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~  780 (1106)
                                                                                                      
T Consensus       257 --------------------------------------------------------------------------------  256 (416)
T 2pm9_A          257 --------------------------------------------------------------------------------  256 (416)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CccccccCccccCCCCCCccccccCCCCCCCCeeEEEEec-CCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEE
Q 001295          781 GKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLA  858 (1106)
Q Consensus       781 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~  858 (1106)
                                             +. .+|...|.+++|+| ++++|++++ ||.|++||+.+++.+..+.+|...|.+++
T Consensus       257 -----------------------~~-~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~  312 (416)
T 2pm9_A          257 -----------------------LN-QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTK  312 (416)
T ss_dssp             -----------------------CC-SCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEE
T ss_pred             -----------------------ee-cCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEE
Confidence                                   00 01667788888988 888899888 89999999999999999999999999999


Q ss_pred             EecCCC-ceEEEeeCCCcEEEEEeecceEEEEec-----------------------------------CcccCeeEEEE
Q 001295          859 FHPQDN-NIIAIGMDDSSIQIYNVRVDEVKSKLK-----------------------------------GHSKRITGLAF  902 (1106)
Q Consensus       859 ~s~~d~-~~la~g~~dg~v~iwd~~~~~~~~~l~-----------------------------------~h~~~V~~l~~  902 (1106)
                      |+| ++ .+|++++.||.|++||+.+++......                                   .|...+++++|
T Consensus       313 ~s~-~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (416)
T 2pm9_A          313 FAP-EAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHW  391 (416)
T ss_dssp             ECT-TCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEE
T ss_pred             ECC-CCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEE
Confidence            999 66 899999999999999998765332211                                   16778889999


Q ss_pred             ecCCCEEEEEcCCCcEEEEeCCC
Q 001295          903 SHALNVLVSSGADSQLCVWSSDG  925 (1106)
Q Consensus       903 s~d~~~l~s~s~Dg~i~vwd~~~  925 (1106)
                      +|||++|++++.|++|+||++.+
T Consensus       392 s~dg~~la~~~~d~~v~~w~~~~  414 (416)
T 2pm9_A          392 AFGGKLVQITPDGKGVSITNPKI  414 (416)
T ss_dssp             ETTTEEECBCTTSSCBCCBCCCC
T ss_pred             eeCCeEEEEeCCCCeEEEEEecc
Confidence            99999999999999999999986

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.1e-36  Score=340.32  Aligned_cols=289  Identities=14%  Similarity=0.184  Sum_probs=248.6

Q ss_pred             ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEE
Q 001295          407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  486 (1106)
Q Consensus       407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw  486 (1106)
                      .+.+|.+.|++++|+||+++||+|+.|++|+|||..+++...   .+..|...|.+++|+|++.  ++++|+.|+.+++|
T Consensus        59 ~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---~~~~~~~~v~~~~~sp~g~--~lasg~~d~~i~v~  133 (354)
T 2pbi_B           59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---AVTMPCTWVMACAYAPSGC--AIACGGLDNKCSVY  133 (354)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCEEEECTTSS--EEEEESTTSEEEEE
T ss_pred             EecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---EEecCCCCEEEEEECCCCC--EEEEeeCCCCEEEE
Confidence            368999999999999999999999999999999999887655   5667899999999999999  89999999999999


Q ss_pred             eCCCC------ceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeE
Q 001295          487 DATNG------AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRT  560 (1106)
Q Consensus       487 d~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~  560 (1106)
                      ++...      .....+.+|...|.+++|+++  +..|++++.|++|++||+++++....+..|...|.++.++++.   
T Consensus       134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~---  208 (354)
T 2pbi_B          134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNS--DMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSE---  208 (354)
T ss_dssp             ECCCCTTCCSGGGCEEEEECSSCEEEEEECSS--SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCS---
T ss_pred             EEeccccccccccceeeeccCCcEEEEEEeCC--CCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCC---
Confidence            98643      346778899999999998754  4689999999999999999988888888888877777776532   


Q ss_pred             EEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEcc
Q 001295          561 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS  640 (1106)
Q Consensus       561 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~  640 (1106)
                                      ++++|++++.|+.|++||+++++++..+..|  ...|.+++|+|++.+|++++.|++|++||++
T Consensus       209 ----------------~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h--~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~  270 (354)
T 2pbi_B          209 ----------------TGNTFVSGGCDKKAMVWDMRSGQCVQAFETH--ESDVNSVRYYPSGDAFASGSDDATCRLYDLR  270 (354)
T ss_dssp             ----------------SCCEEEEEETTSCEEEEETTTCCEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             ----------------CCCEEEEEeCCCeEEEEECCCCcEEEEecCC--CCCeEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence                            2457999999999999999999999998866  4479999999999999999999999999986


Q ss_pred             CCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceee
Q 001295          641 DGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKV  720 (1106)
Q Consensus       641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v  720 (1106)
                      ++. .+.                                                                         
T Consensus       271 ~~~-~~~-------------------------------------------------------------------------  276 (354)
T 2pbi_B          271 ADR-EVA-------------------------------------------------------------------------  276 (354)
T ss_dssp             TTE-EEE-------------------------------------------------------------------------
T ss_pred             CCc-EEE-------------------------------------------------------------------------
Confidence            541 000                                                                         


Q ss_pred             EecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCcc
Q 001295          721 WKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMM  800 (1106)
Q Consensus       721 w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~  800 (1106)
                                                                      ++..                            
T Consensus       277 ------------------------------------------------~~~~----------------------------  280 (354)
T 2pbi_B          277 ------------------------------------------------IYSK----------------------------  280 (354)
T ss_dssp             ------------------------------------------------EECC----------------------------
T ss_pred             ------------------------------------------------EEcC----------------------------
Confidence                                                            0000                            


Q ss_pred             ccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEE
Q 001295          801 TNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY  879 (1106)
Q Consensus       801 ~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iw  879 (1106)
                            ..+...+.+++|+|++++|++|+ |++|++||+.+++.+..+.+|...|++++|+| ++++||+|+.||+|+||
T Consensus       281 ------~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~sp-dg~~l~sgs~D~~v~vW  353 (354)
T 2pbi_B          281 ------ESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSP-DGTAFCSGSWDHTLRVW  353 (354)
T ss_dssp             ------TTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT-TSSCEEEEETTSEEEEE
T ss_pred             ------CCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECC-CCCEEEEEcCCCCEEec
Confidence                  00234577899999999999998 89999999999999999999999999999999 99999999999999999


Q ss_pred             E
Q 001295          880 N  880 (1106)
Q Consensus       880 d  880 (1106)
                      +
T Consensus       354 ~  354 (354)
T 2pbi_B          354 A  354 (354)
T ss_dssp             C
T ss_pred             C
Confidence            5

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.6e-37  Score=343.87  Aligned_cols=257  Identities=15%  Similarity=0.180  Sum_probs=202.1

Q ss_pred             CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCc-cccccccCCCCcCeEEEEEccCCCEE
Q 001295          349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSM-PLQAALVKDPGVSVNRVIWSPDGSLF  427 (1106)
Q Consensus       349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~h~~~V~~l~~spdg~~l  427 (1106)
                      |...|.+++|||||+ +|++++ |+++++||...         ..|+...... .........|...|.+++|+||+ +|
T Consensus        29 ~~~~v~~~~fs~dG~-~l~~~s-d~~~r~Wd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l   96 (344)
T 4gqb_B           29 MERQLEAARYRSDGA-LLLGAS-SLSGRCWAGSL---------WLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GI   96 (344)
T ss_dssp             CCSEEEEEEECTTSC-EEEEEE-CCSSSCCCEEE---------EEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EE
T ss_pred             ccCCEEEEEECCCCC-EEEEEe-CCceEEeecee---------eeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eE
Confidence            667899999999999 577776 78899997321         1111100000 00011123456789999999985 68


Q ss_pred             EEEeCCCeEEEEEccCCceeeee-eeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEE
Q 001295          428 GVAYSRHIVQIYSYHGGDEVRQH-LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS  506 (1106)
Q Consensus       428 as~~~d~~v~iwd~~~~~~~~~~-~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~  506 (1106)
                      ++|+.||+|+|||+.+++.+... ..+.+|.+.|++++|+|+|+  +|++|+.|++|++||+.+++++..+.+|...|.+
T Consensus        97 ~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~  174 (344)
T 4gqb_B           97 LVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTC  174 (344)
T ss_dssp             EEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             EEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEE
Confidence            89999999999999998765432 24568999999999999999  8999999999999999999999999999999999


Q ss_pred             EeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeC--CCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEE
Q 001295          507 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA--PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  584 (1106)
Q Consensus       507 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  584 (1106)
                      ++|+++.. .+|++++.|++|++||+++.+....+..  +...+.+++|+|++                    ++++++|
T Consensus       175 ~~~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~--------------------~~~l~sg  233 (344)
T 4gqb_B          175 VAASPHKD-SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQ--------------------SEVFVFG  233 (344)
T ss_dssp             EEECSSCT-TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSC--------------------TTEEEEE
T ss_pred             EEecCCCC-CceeeeccccccccccccccceeeeeecceeeccceeeeecCCC--------------------CcceEEe
Confidence            99976653 5889999999999999998877665532  33345555555543                    2468899


Q ss_pred             ECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCC-CEEEEEeCCCcEEEEEccCC
Q 001295          585 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG-CLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       585 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~~  642 (1106)
                      +.|+.|++||+++++++..+.+|.  ..|++++|+|++ ++|++|+.|++|++||+.++
T Consensus       234 ~~dg~v~~wd~~~~~~~~~~~~h~--~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~  290 (344)
T 4gqb_B          234 DENGTVSLVDTKSTSCVLSSAVHS--QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS  290 (344)
T ss_dssp             ETTSEEEEEESCC--CCEEEECCS--SCEEEEEECSSSSCCEEEEETTSCEEEECTTCC
T ss_pred             ccCCcEEEEECCCCcEEEEEcCCC--CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Confidence            999999999999999999998774  479999999987 68999999999999998765

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.1e-36  Score=337.25  Aligned_cols=216  Identities=20%  Similarity=0.304  Sum_probs=181.5

Q ss_pred             ccCCCCcCeEEEEE-----cc-CCCEEEEEeCCCeEEEEEccCCce----eeeeeeeccccCCeeEEEEcCCCCceEEEE
Q 001295          407 LVKDPGVSVNRVIW-----SP-DGSLFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVIT  476 (1106)
Q Consensus       407 ~~~~h~~~V~~l~~-----sp-dg~~las~~~d~~v~iwd~~~~~~----~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s  476 (1106)
                      .+.+|.+.|++++|     ++ |+++||+|+.|++|+|||+.+++.    ......+.+|...|.+++|+|++.  ++++
T Consensus        16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~--~l~s   93 (343)
T 2xzm_R           16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC--FAIS   93 (343)
T ss_dssp             EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT--EEEE
T ss_pred             eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC--EEEE
Confidence            47899999999999     77 999999999999999999986532    123446889999999999999999  8999


Q ss_pred             ecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEee---CCCCeeEEEEE
Q 001295          477 CGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE---APGRWCTTMAY  553 (1106)
Q Consensus       477 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~  553 (1106)
                      |+.|++|++||+++++.+..+.+|...|.+++|+++  +.+|++++.|+.|++||+.. .......   .+...+.+++|
T Consensus        94 ~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~--~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~  170 (343)
T 2xzm_R           94 SSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPD--NRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRY  170 (343)
T ss_dssp             EETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSS--TTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEE
T ss_pred             EcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCC--CCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeeee
Confidence            999999999999999999999999999999998764  47999999999999999973 3332222   56677888888


Q ss_pred             ecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCc
Q 001295          554 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG  633 (1106)
Q Consensus       554 s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~  633 (1106)
                      +|++..           ...+.|.+.++++++.|+.|++||. .++....+..|  ...|.+++|+|+|++|++|+.||.
T Consensus       171 ~~~~~~-----------~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h--~~~v~~~~~s~~g~~l~sgs~dg~  236 (343)
T 2xzm_R          171 SPIMKS-----------ANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAH--ESNVNHLSISPNGKYIATGGKDKK  236 (343)
T ss_dssp             CCCCCS-----------CSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECC--SSCEEEEEECTTSSEEEEEETTCE
T ss_pred             cccccc-----------ccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCc--cccceEEEECCCCCEEEEEcCCCe
Confidence            887641           1123456678999999999999994 55666677666  457999999999999999999999


Q ss_pred             EEEEEccC
Q 001295          634 IKILATSD  641 (1106)
Q Consensus       634 i~iwd~~~  641 (1106)
                      |++||+.+
T Consensus       237 v~iwd~~~  244 (343)
T 2xzm_R          237 LLIWDILN  244 (343)
T ss_dssp             EEEEESSC
T ss_pred             EEEEECCC
Confidence            99999743

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=6.2e-37  Score=353.27  Aligned_cols=263  Identities=13%  Similarity=0.145  Sum_probs=228.2

Q ss_pred             CCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEE
Q 001295          351 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA  430 (1106)
Q Consensus       351 ~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~  430 (1106)
                      +.+++++|+|+|++ |++|+.||.|++||+.+++...                   .+..| ..+....|+|++++||+|
T Consensus        57 ~~~~~~~~s~~g~~-l~~~~~d~~v~i~d~~~~~~~~-------------------~~~~~-~~~~~~~~~~~~~~l~~~  115 (420)
T 3vl1_A           57 DAGKGNTFEKVGSH-LYKARLDGHDFLFNTIIRDGSK-------------------MLKRA-DYTAVDTAKLQMRRFILG  115 (420)
T ss_dssp             BCCTTCEEEEEETT-EEEEEETTEEEEEECCSEETTT-------------------TSCSC-CEEEEEEECSSSCEEEEE
T ss_pred             ccccceeeeecCCe-EEEEEcCCcEEEEEecccceee-------------------EEecC-CceEEEEEecCCCEEEEE
Confidence            44668999999996 8999999999999998876543                   23445 455666889999999999


Q ss_pred             eCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEecc
Q 001295          431 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH  510 (1106)
Q Consensus       431 ~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~  510 (1106)
                      +.|+.|++||+.+++...   .+.+|.+.|.+++|+|+++  +|++|+.|++|++||+.+++.+..+.+|...|.+++|+
T Consensus       116 ~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~  190 (420)
T 3vl1_A          116 TTEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII  190 (420)
T ss_dssp             ETTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEE
T ss_pred             ECCCCEEEEeCCCcceee---ecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEc
Confidence            999999999999887654   5679999999999999999  89999999999999999999999999999999999997


Q ss_pred             ccCCceEEEEEecCCeEEEEeCCCCCceeEeeC---CCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECC
Q 001295          511 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA---PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD  587 (1106)
Q Consensus       511 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  587 (1106)
                      ++  +.+|++++.||.|++||+++.+....+..   +...+.++++.+++...........+..++|+|+++++++++.|
T Consensus       191 ~~--~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  268 (420)
T 3vl1_A          191 DR--GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVS  268 (420)
T ss_dssp             TT--TTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETT
T ss_pred             CC--CCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCC
Confidence            64  47999999999999999999888777764   56789999999887755555556688889999999999999999


Q ss_pred             CeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCC-EEEEEeCCCcEEEEEccCC
Q 001295          588 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC-LLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       588 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iwd~~~~  642 (1106)
                      |.|++||+.+++.+..+.. .+...|.+++|+|++. +|++|+.||.|++||+.++
T Consensus       269 g~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~  323 (420)
T 3vl1_A          269 GVITVHNVFSKEQTIQLPS-KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSP  323 (420)
T ss_dssp             SCEEEEETTTCCEEEEECC-TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT
T ss_pred             CeEEEEECCCCceeEEccc-ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCC
Confidence            9999999999988777753 2345799999999999 9999999999999999876

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.1e-36  Score=339.51  Aligned_cols=301  Identities=16%  Similarity=0.194  Sum_probs=238.7

Q ss_pred             cccc-ceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEe
Q 001295          741 LRAT-KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS  819 (1106)
Q Consensus       741 ~~~~-~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s  819 (1106)
                      +|.. .|..++|+|+|++|++++.|+.|++|++......                    .......  +|...|.+++|+
T Consensus        13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~--------------------~~~~~~~--~h~~~v~~~~~s   70 (345)
T 3fm0_A           13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWI--------------------CKSVLSE--GHQRTVRKVAWS   70 (345)
T ss_dssp             CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEE--------------------EEEEECS--SCSSCEEEEEEC
T ss_pred             CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcce--------------------eeeeecc--ccCCcEEEEEEC
Confidence            3666 8999999999999999999999999997632110                    0000112  389999999999


Q ss_pred             cCCCEEEEEe-CCeEEEEEcCCC--ceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecc---eEEEEecCc
Q 001295          820 KNDSYVMSAS-GGKISLFNMMTF--KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD---EVKSKLKGH  893 (1106)
Q Consensus       820 ~~~~~l~~~s-dg~i~vwd~~~~--~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~---~~~~~l~~h  893 (1106)
                      |++++|++++ |++|++|++.++  +++..+.+|...|.+++|+| ++++|++|+.|+.|++||+.++   +++..+.+|
T Consensus        71 p~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h  149 (345)
T 3fm0_A           71 PCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSH  149 (345)
T ss_dssp             TTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCC
T ss_pred             CCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCc
Confidence            9999999999 999999998866  45778999999999999999 8999999999999999999875   456788999


Q ss_pred             ccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEec
Q 001295          894 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFET  972 (1106)
Q Consensus       894 ~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d~  972 (1106)
                      ...|.+++|+|++.+|++++.|++|++|++.+++.   .+.....+|.   ..|.+++|+|+|++|++ +.|+.|++||.
T Consensus       150 ~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~---~~~~~~~~h~---~~v~~l~~sp~g~~l~s~s~D~~v~iW~~  223 (345)
T 3fm0_A          150 TQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW---VCCATLEGHE---STVWSLAFDPSGQRLASCSDDRTVRIWRQ  223 (345)
T ss_dssp             CSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEE---EEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCE---EEEEEecCCC---CceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence            99999999999999999999999999999887532   2233445555   48999999999999999 58999999996


Q ss_pred             CCc---------------eEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEe--eCCCcccCCCC
Q 001295          973 TKL---------------ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCR--INPSAYLPAGV 1035 (1106)
Q Consensus       973 ~~~---------------~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~--~~~~~~~~~~~ 1035 (1106)
                      ...               +++..+. ..|...|++++|+|++.+|++++.|+.|++|+...+.....  +........+|
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h  302 (345)
T 3fm0_A          224 YLPGNEQGVACSGSDPSWKCICTLS-GFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAH  302 (345)
T ss_dssp             ECTTCTTCCCCC---CEEEEEEEEC-SSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSS
T ss_pred             ccCCCCccceeeccCCccceeEEec-CCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccc
Confidence            321               2333332 24889999999999999999999999999999876532100  00001112234


Q ss_pred             CCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCCC
Q 001295         1036 SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEG 1074 (1106)
Q Consensus      1036 ~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~~ 1074 (1106)
                       ...|.  +++|+|+++.+|++|+.||+|++|++.+.+.
T Consensus       303 -~~~V~--~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~  338 (345)
T 3fm0_A          303 -SQDVN--CVAWNPKEPGLLASCSDDGEVAFWKYQRPEG  338 (345)
T ss_dssp             -SSCEE--EEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred             -cCcEe--EeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence             33366  8999996556999999999999999999874

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.8e-36  Score=336.33  Aligned_cols=324  Identities=15%  Similarity=0.173  Sum_probs=265.9

Q ss_pred             CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEE
Q 001295          349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  428 (1106)
Q Consensus       349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  428 (1106)
                      |.+.|.+++|||||+. ++++..++.+.+|+.........                   ..+|...|.+++|+|++++|+
T Consensus         8 ~~~~v~~~~~s~dg~~-~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~h~~~v~~~~~~~~~~~l~   67 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQM-QPVPFPPDALIGPGIPRHARQIN-------------------TLNHGEVVCAVTISNPTRHVY   67 (337)
T ss_dssp             EEEECCEEEECSSSCE-EECCCCTTSSSSTTCCSEEEEEE-------------------EECCSSCCCEEEECSSSSEEE
T ss_pred             cCCceeEEEECCCCCE-EEeecCCCcEeccccCCccccce-------------------eccCCCceEEEEEecCCcEEE
Confidence            5678999999999995 77777677776776554333221                   357999999999999999999


Q ss_pred             EEeCCCeEEEEEccCCceeeeeeeec--cccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCc--eeEEEeccCCCe
Q 001295          429 VAYSRHIVQIYSYHGGDEVRQHLEID--AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA--KQYIFEGHEAPV  504 (1106)
Q Consensus       429 s~~~d~~v~iwd~~~~~~~~~~~~l~--~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~h~~~v  504 (1106)
                      +++ ||.|++||+.+++.......+.  +|...|.+++|+|+++  ++++++.|+.|++||+.+++  ....+.+|...|
T Consensus        68 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i  144 (337)
T 1gxr_A           68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC  144 (337)
T ss_dssp             EEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred             EcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence            998 9999999999877555444444  7999999999999999  89999999999999999887  667888999999


Q ss_pred             EEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEE
Q 001295          505 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  584 (1106)
Q Consensus       505 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  584 (1106)
                      .+++|++  ++.++++++.||.|++||+++.+....+..+...+.+++|+|+++                     +++++
T Consensus       145 ~~~~~~~--~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~---------------------~l~~~  201 (337)
T 1gxr_A          145 YALAISP--DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGT---------------------KLWTG  201 (337)
T ss_dssp             EEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS---------------------EEEEE
T ss_pred             EEEEECC--CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCC---------------------EEEEE
Confidence            9999866  457999999999999999998777777776766666666666554                     79999


Q ss_pred             ECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCC
Q 001295          585 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK  664 (1106)
Q Consensus       585 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  664 (1106)
                      +.|+.|++||+.+++.+..+...   ..+.+++|+|+++++++++.++.|++||+.++. ..                  
T Consensus       202 ~~dg~i~~~d~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~-~~------------------  259 (337)
T 1gxr_A          202 GLDNTVRSWDLREGRQLQQHDFT---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD-KY------------------  259 (337)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECS---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSC-EE------------------
T ss_pred             ecCCcEEEEECCCCceEeeecCC---CceEEEEECCCCCEEEEEcCCCcEEEEECCCCC-eE------------------
Confidence            99999999999999988887533   358999999999999999999999999976541 00                  


Q ss_pred             CCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCcccccc
Q 001295          665 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT  744 (1106)
Q Consensus       665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~  744 (1106)
                                                                                                      
T Consensus       260 --------------------------------------------------------------------------------  259 (337)
T 1gxr_A          260 --------------------------------------------------------------------------------  259 (337)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCE
Q 001295          745 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY  824 (1106)
Q Consensus       745 ~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~  824 (1106)
                                             .                                   +  ..|...|.+++|+|++++
T Consensus       260 -----------------------~-----------------------------------~--~~~~~~v~~~~~~~~~~~  279 (337)
T 1gxr_A          260 -----------------------Q-----------------------------------L--HLHESCVLSLKFAYCGKW  279 (337)
T ss_dssp             -----------------------E-----------------------------------E--CCCSSCEEEEEECTTSSE
T ss_pred             -----------------------E-----------------------------------E--cCCccceeEEEECCCCCE
Confidence                                   0                                   0  015666788888888888


Q ss_pred             EEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEee
Q 001295          825 VMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR  882 (1106)
Q Consensus       825 l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~  882 (1106)
                      |++++ ||.|++||+.+++.+... .|...|.+++|+| ++++|++++.||.|++|++.
T Consensus       280 l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          280 FVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISV-DDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECT-TSCEEEEEETTSCEEEEEEE
T ss_pred             EEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECC-CCCEEEEecCCCeEEEEEEe
Confidence            88887 788888888887776544 3778899999999 89999999999999999973

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.3e-35  Score=326.68  Aligned_cols=248  Identities=18%  Similarity=0.277  Sum_probs=213.2

Q ss_pred             ccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCE
Q 001295          347 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  426 (1106)
Q Consensus       347 ~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~  426 (1106)
                      .+|.+.|++++|+|+|++ |++|+.||.|+|||+.+++...                   .+.+|...|.+++|+|++++
T Consensus        20 ~gh~~~v~~~~~s~~~~~-l~s~~~dg~i~iw~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~   79 (312)
T 4ery_A           20 AGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEK-------------------TISGHKLGISDVAWSSDSNL   79 (312)
T ss_dssp             CCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTCCEEE-------------------EECCCSSCEEEEEECTTSSE
T ss_pred             cccCCcEEEEEECCCCCE-EEEeeCCCeEEEEeCCCcccch-------------------hhccCCCceEEEEEcCCCCE
Confidence            459999999999999995 9999999999999999887665                   36889999999999999999


Q ss_pred             EEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEE
Q 001295          427 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS  506 (1106)
Q Consensus       427 las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~  506 (1106)
                      |++++.|+.|++||+.+++.+.   .+.+|...|.+++|+|+++  ++++|+.|+.|++||+++++.+..+..|...|.+
T Consensus        80 l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~  154 (312)
T 4ery_A           80 LVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA  154 (312)
T ss_dssp             EEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred             EEEECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEE
Confidence            9999999999999999987665   6789999999999999999  8999999999999999999999999999999999


Q ss_pred             EeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeC-CCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEE
Q 001295          507 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA-PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG  585 (1106)
Q Consensus       507 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  585 (1106)
                      ++|++  ++.+|++++.||.|++||+++......+.. +..                     .+..++|+|+++++++++
T Consensus       155 ~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~l~~~~  211 (312)
T 4ery_A          155 VHFNR--DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP---------------------PVSFVKFSPNGKYILAAT  211 (312)
T ss_dssp             EEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCC---------------------CEEEEEECTTSSEEEEEE
T ss_pred             EEEcC--CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCC---------------------ceEEEEECCCCCEEEEEc
Confidence            99865  457999999999999999988765554322 222                     344455566666899999


Q ss_pred             CCCeEEEEECCCcceeEEEccCCCCCCcCeEEEc-cCCCEEEEEeCCCcEEEEEccCC
Q 001295          586 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       586 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s-~~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                      .|+.|++||+.+++.+..+..+..........++ +++.+|++|+.||.|++||+.++
T Consensus       212 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~  269 (312)
T 4ery_A          212 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK  269 (312)
T ss_dssp             TTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC
T ss_pred             CCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc
Confidence            9999999999999999998877553333344444 58899999999999999998776

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=7e-36  Score=339.58  Aligned_cols=303  Identities=18%  Similarity=0.301  Sum_probs=228.2

Q ss_pred             CCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeecccc------------------CCeeEEEEcCCCCc
Q 001295          410 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV------------------GGVNDIAFSHPNKQ  471 (1106)
Q Consensus       410 ~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~------------------~~V~~~~~s~d~~~  471 (1106)
                      +|...|.+++|||||++||+|+ +++++||++.+++.+.   .+.+|.                  ..|.+++|+|+++ 
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~-  136 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVA---RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK-  136 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEE---EECC-----------------CCCCBEEEEEECTTSS-
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEE---EecCccccccccccccccccCCCceeEEEEEECCCCC-
Confidence            6899999999999999999986 6889999999988665   333332                  2499999999999 


Q ss_pred             eEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEE
Q 001295          472 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM  551 (1106)
Q Consensus       472 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  551 (1106)
                       +|++|+.|++|+|||+.+++.+..+.+|...|.+++|+++  +.+|++++.|++|++||+++                 
T Consensus       137 -~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~--~~~l~s~s~d~~v~iwd~~~-----------------  196 (393)
T 1erj_A          137 -FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS--GDKLVSGSGDRTVRIWDLRT-----------------  196 (393)
T ss_dssp             -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT--SSEEEEEETTSEEEEEETTT-----------------
T ss_pred             -EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCC--CCEEEEecCCCcEEEEECCC-----------------
Confidence             8999999999999999999999999999999988887654  35677777777777776653                 


Q ss_pred             EEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEcc-CCCEEEEEeC
Q 001295          552 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTN  630 (1106)
Q Consensus       552 ~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~  630 (1106)
                                                                    ++....+..+   ..+.+++|+| ++++|++|+.
T Consensus       197 ----------------------------------------------~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~s~  227 (393)
T 1erj_A          197 ----------------------------------------------GQCSLTLSIE---DGVTTVAVSPGDGKYIAAGSL  227 (393)
T ss_dssp             ----------------------------------------------TEEEEEEECS---SCEEEEEECSTTCCEEEEEET
T ss_pred             ----------------------------------------------CeeEEEEEcC---CCcEEEEEECCCCCEEEEEcC
Confidence                                                          3222233222   2477899999 8999999999


Q ss_pred             CCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccc
Q 001295          631 DNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRI  710 (1106)
Q Consensus       631 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  710 (1106)
                      ||.|++||+.++ ..+..+....                                                         
T Consensus       228 d~~v~iwd~~~~-~~~~~~~~~~---------------------------------------------------------  249 (393)
T 1erj_A          228 DRAVRVWDSETG-FLVERLDSEN---------------------------------------------------------  249 (393)
T ss_dssp             TSCEEEEETTTC-CEEEEEC------------------------------------------------------------
T ss_pred             CCcEEEEECCCC-cEEEeecccc---------------------------------------------------------
Confidence            999999998776 2211110000                                                         


Q ss_pred             cccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCcc
Q 001295          711 TEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQ  790 (1106)
Q Consensus       711 ~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~  790 (1106)
                                                ....+|...|.+++|+|+++.|++++.|+.|++||+.....             
T Consensus       250 --------------------------~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~-------------  290 (393)
T 1erj_A          250 --------------------------ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN-------------  290 (393)
T ss_dssp             -----------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------------
T ss_pred             --------------------------cCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCC-------------
Confidence                                      00012566677777777777777777777777776542000             


Q ss_pred             ccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEe
Q 001295          791 LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIG  870 (1106)
Q Consensus       791 ~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g  870 (1106)
                                            .....                   ....+.+...+.+|...|.+++|+| ++.+|++|
T Consensus       291 ----------------------~~~~~-------------------~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sg  328 (393)
T 1erj_A          291 ----------------------KSDSK-------------------TPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSG  328 (393)
T ss_dssp             ---------------------------------------------------CEEEEEECCSSCEEEEEECG-GGCEEEEE
T ss_pred             ----------------------ccccc-------------------CCCCCcceEEEecccCcEEEEEECC-CCCEEEEE
Confidence                                  00000                   0012344556778999999999999 89999999


Q ss_pred             eCCCcEEEEEeecceEEEEecCcccCeeEEEEec------CCCEEEEEcCCCcEEEEeCCC
Q 001295          871 MDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH------ALNVLVSSGADSQLCVWSSDG  925 (1106)
Q Consensus       871 ~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~------d~~~l~s~s~Dg~i~vwd~~~  925 (1106)
                      +.||.|++||+.+++.+..+.+|...|.+++|++      ++.+||+|+.||+|+||++..
T Consensus       329 s~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          329 SKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             eCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence            9999999999999999999999999999999986      688999999999999999865

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.6e-38  Score=362.36  Aligned_cols=366  Identities=14%  Similarity=0.184  Sum_probs=269.8

Q ss_pred             CCCCcEEEEEecCCCeEEEEE----------eccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEE
Q 001295          349 QGSSPMSMDFHPVQQTLLLVG----------TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV  418 (1106)
Q Consensus       349 h~~~v~~~~~sp~g~~llatg----------~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l  418 (1106)
                      +...|.+++|||+|+.++++|          +.|+.|+|||+.+++....  +               ....|...|.++
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~--~---------------~~~~~~~~v~~~   73 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP--I---------------ASLQVDSKFNDL   73 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC--S---------------CCCCCSSCEEEE
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE--E---------------EEEecCCceEEE
Confidence            446799999999998679999          8899999999998763210  0               124688999999


Q ss_pred             EEccCCCEEEEEeCCCeEEEEEccCCce-eeeeeeeccccCCeeEEEEcCC-CCceEEEEecCCCcEEEEeCCCCc----
Q 001295          419 IWSPDGSLFGVAYSRHIVQIYSYHGGDE-VRQHLEIDAHVGGVNDIAFSHP-NKQLCVITCGDDKTIKVWDATNGA----  492 (1106)
Q Consensus       419 ~~spdg~~las~~~d~~v~iwd~~~~~~-~~~~~~l~~h~~~V~~~~~s~d-~~~~~l~s~~~d~~i~iwd~~~~~----  492 (1106)
                      +|+|++++|++++.||.|++||+.+... ......+.+|...|.+++|+|+ +.  +|++++.|+.|++||+.+++    
T Consensus        74 ~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~  151 (416)
T 2pm9_A           74 DWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTESPS  151 (416)
T ss_dssp             EECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSCTT
T ss_pred             EECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCccccc
Confidence            9999999999999999999999987211 1133367899999999999999 66  79999999999999999886    


Q ss_pred             --eeE---EEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCC------CCeeEEEEEecCCCeEE
Q 001295          493 --KQY---IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP------GRWCTTMAYSADGTRTY  561 (1106)
Q Consensus       493 --~~~---~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~v~~~~~s~~~~~~~  561 (1106)
                        ...   .+.+|...|.+++|+++. +.+|++++.||.|++||+++.+....+..+      ...+.+++|+|++.   
T Consensus       152 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---  227 (416)
T 2pm9_A          152 NYTPLTPGQSMSSVDEVISLAWNQSL-AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNS---  227 (416)
T ss_dssp             TCCCBCCCCSCCSSCCCCEEEECSSC-TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCT---
T ss_pred             cccccccccccCCCCCeeEEEeCCCC-CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCC---
Confidence              333   346799999999997652 368999999999999999987776666655      44555555555542   


Q ss_pred             EeeeccceeEEEEcCCCCEEEEEECCC---eEEEEECCCc-ceeEEEc-cCCCCCCcCeEEEcc-CCCEEEEEeCCCcEE
Q 001295          562 QGFRKRSLGVVQFDTTKNRFLAAGDDF---SIKFWDMDSV-QLLTSID-ADGGLPASPRIRFNK-DGCLLAVSTNDNGIK  635 (1106)
Q Consensus       562 ~~~~~~~i~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~-~~~~~~~-~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~  635 (1106)
                                       .++++++.|+   .|++||++++ +.+..+. .|  ...|.+++|+| ++++|++++.||.|+
T Consensus       228 -----------------~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~l~s~~~dg~v~  288 (416)
T 2pm9_A          228 -----------------TRVATATGSDNDPSILIWDLRNANTPLQTLNQGH--QKGILSLDWCHQDEHLLLSSGRDNTVL  288 (416)
T ss_dssp             -----------------TEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCC--SSCEEEEEECSSCSSCEEEEESSSEEE
T ss_pred             -----------------CEEEEEECCCCCceEEEEeCCCCCCCcEEeecCc--cCceeEEEeCCCCCCeEEEEeCCCCEE
Confidence                             4788999998   9999999986 5566665 44  45799999999 999999999999999


Q ss_pred             EEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCC
Q 001295          636 ILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESN  715 (1106)
Q Consensus       636 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  715 (1106)
                      +||+.++ +.+..+.                                                                 
T Consensus       289 ~wd~~~~-~~~~~~~-----------------------------------------------------------------  302 (416)
T 2pm9_A          289 LWNPESA-EQLSQFP-----------------------------------------------------------------  302 (416)
T ss_dssp             EECSSSC-CEEEEEE-----------------------------------------------------------------
T ss_pred             EeeCCCC-ccceeec-----------------------------------------------------------------
Confidence            9998776 2222111                                                                 


Q ss_pred             CceeeEecCCCCCCccceecccCccccccceEEEEEcCCC-ceEEEeecCceEEEeeccccccCCCCccccccCccccCC
Q 001295          716 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSG-NAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQP  794 (1106)
Q Consensus       716 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~  794 (1106)
                                               .|...|.+++|+|++ ..+++++.|+.|++|++.....                 
T Consensus       303 -------------------------~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~-----------------  340 (416)
T 2pm9_A          303 -------------------------ARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTN-----------------  340 (416)
T ss_dssp             -------------------------CSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCC-----------------
T ss_pred             -------------------------CCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCC-----------------
Confidence                                     266778899999999 8999999999999999763110                 


Q ss_pred             CCCCccccccCCCCCCC-----CeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEE
Q 001295          795 PSGIMMTNDVTDSNPEE-----AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAI  869 (1106)
Q Consensus       795 ~~~~~~~~~~~~~~~~~-----~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~  869 (1106)
                           ..    .  ...     ......+.+.+..++.+..  +.     .... .....|...+.+++|+| ++++||+
T Consensus       341 -----~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~-~~~~~~~~~~~~~~~s~-dg~~la~  400 (416)
T 2pm9_A          341 -----TL----D--EQETETKQQESETDFWNNVSREESKEK--PS-----VFHL-QAPTWYGEPSPAAHWAF-GGKLVQI  400 (416)
T ss_dssp             -----SS----C--C----------------------CCSC--CC-----SSCC-CCCSTTCCCSCCCEEET-TTEEECB
T ss_pred             -----Cc----c--cccccccccCCcccccccccccccccc--cc-----cccc-cCCccccCCccceEEee-CCeEEEE
Confidence                 00    0  110     0011112222222221110  10     0111 22334677888999999 9999999


Q ss_pred             eeCCCcEEEEEeecc
Q 001295          870 GMDDSSIQIYNVRVD  884 (1106)
Q Consensus       870 g~~dg~v~iwd~~~~  884 (1106)
                      |+.||.|+||++.+.
T Consensus       401 ~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          401 TPDGKGVSITNPKIS  415 (416)
T ss_dssp             CTTSSCBCCBCCCCC
T ss_pred             eCCCCeEEEEEeccC
Confidence            999999999998764

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.4e-35  Score=326.24  Aligned_cols=291  Identities=22%  Similarity=0.408  Sum_probs=249.5

Q ss_pred             eeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEE
Q 001295          450 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA  529 (1106)
Q Consensus       450 ~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i  529 (1106)
                      ..++.+|...|.+++|+|+++  +|++|+.|+.|++||+.+++....+.+|...|.+++|++  ++++|++++.|+.|++
T Consensus        16 ~~~~~gh~~~v~~~~~s~~~~--~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~d~~i~v   91 (312)
T 4ery_A           16 KFTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS--DSNLLVSASDDKTLKI   91 (312)
T ss_dssp             EEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT--TSSEEEEEETTSEEEE
T ss_pred             EEEEcccCCcEEEEEECCCCC--EEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcC--CCCEEEEECCCCEEEE
Confidence            346889999999999999999  899999999999999999999999999999999999876  4579999999999999


Q ss_pred             EeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCC
Q 001295          530 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG  609 (1106)
Q Consensus       530 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  609 (1106)
                      ||+++.+....+..|...|.+++|+|+++                     ++++++.|+.|++||+.+++.+..+..+. 
T Consensus        92 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~---------------------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-  149 (312)
T 4ery_A           92 WDVSSGKCLKTLKGHSNYVFCCNFNPQSN---------------------LIVSGSFDESVRIWDVKTGKCLKTLPAHS-  149 (312)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEECSSSS---------------------EEEEEETTSCEEEEETTTCCEEEEECCCS-
T ss_pred             EECCCCcEEEEEcCCCCCEEEEEEcCCCC---------------------EEEEEeCCCcEEEEECCCCEEEEEecCCC-
Confidence            99998887777777777666666666554                     79999999999999999999998887664 


Q ss_pred             CCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhccccccccccc
Q 001295          610 LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAAS  689 (1106)
Q Consensus       610 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  689 (1106)
                       ..|.+++|+|++++|++++.||.|++||+.++. .+..+                                        
T Consensus       150 -~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~----------------------------------------  187 (312)
T 4ery_A          150 -DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ-CLKTL----------------------------------------  187 (312)
T ss_dssp             -SCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEEEE----------------------------------------
T ss_pred             -CcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeeEE----------------------------------------
Confidence             479999999999999999999999999986551 00000                                        


Q ss_pred             ccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEE
Q 001295          690 MVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL  769 (1106)
Q Consensus       690 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i  769 (1106)
                                                                                                      
T Consensus       188 --------------------------------------------------------------------------------  187 (312)
T 4ery_A          188 --------------------------------------------------------------------------------  187 (312)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeec
Q 001295          770 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM  848 (1106)
Q Consensus       770 w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~  848 (1106)
                                                        .  ..+...+.+++|+|++++|++++ ||.|++||+.+++.+..+.
T Consensus       188 ----------------------------------~--~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  231 (312)
T 4ery_A          188 ----------------------------------I--DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT  231 (312)
T ss_dssp             ----------------------------------C--CSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEC
T ss_pred             ----------------------------------e--ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEE
Confidence                                              0  01445677888999999999888 8999999999998888888


Q ss_pred             CCCCCee--EEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEc--CCCcEEEEeCC
Q 001295          849 PPPPAAT--FLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG--ADSQLCVWSSD  924 (1106)
Q Consensus       849 ~~~~~v~--~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s--~Dg~i~vwd~~  924 (1106)
                      +|...+.  ...+++.++.+|++|+.||.|++||+.+++++..+.+|.+.|.+++|+|++.+|++++  .|++|++|+.+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          232 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             SSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             ecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            8876543  3355544889999999999999999999999999999999999999999999999987  69999999864

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-37  Score=359.13  Aligned_cols=235  Identities=10%  Similarity=0.048  Sum_probs=171.8

Q ss_pred             CcceeeeccCCCCcEEEEEecCC---------CeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCC
Q 001295          340 PKTVTRTLNQGSSPMSMDFHPVQ---------QTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD  410 (1106)
Q Consensus       340 ~~~~~~~~~h~~~v~~~~~sp~g---------~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  410 (1106)
                      ..+...++.+...|++|+|+|++         + +||+|+.++..                                   
T Consensus       123 ~~r~~~~~~~~~~V~sv~w~p~~~~~~~~~~~~-~LAv~~~~~~~-----------------------------------  166 (524)
T 2j04_B          123 GKRRGFIYNVGGLVTDIAWLNIEENTDIGKDIQ-YLAVAVSQYMD-----------------------------------  166 (524)
T ss_dssp             CCSCEEEEECCC--CCCSCEEECCCCSSCSSEE-EEEEEEEC--------------------------------------
T ss_pred             CCcceEEEECCCceeEEEecccCCCCccCcCCe-EEEEEEecccC-----------------------------------
Confidence            34455666789999999999997         5 58888755310                                   


Q ss_pred             CCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceee-eeeeeccccCCeeEEEEcCC------CCceEEEEecCCCcE
Q 001295          411 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR-QHLEIDAHVGGVNDIAFSHP------NKQLCVITCGDDKTI  483 (1106)
Q Consensus       411 h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~-~~~~l~~h~~~V~~~~~s~d------~~~~~l~s~~~d~~i  483 (1106)
                             -..+|++++||+++.|++|+|||+.+++... ....+.+|.+.|.+++|+|+      +.  +|++++.||+|
T Consensus       167 -------~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~--~LAs~s~Dgtv  237 (524)
T 2j04_B          167 -------EPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVG--CLSFVSQEGTI  237 (524)
T ss_dssp             ----------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSC--EEEEEETTSCE
T ss_pred             -------CccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCc--eEEEEecCCeE
Confidence                   0136899999999999999999998876432 12346678899999999997      45  89999999999


Q ss_pred             EEEeCCCCce-----------eEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCc-eeEeeCCCCeeEEE
Q 001295          484 KVWDATNGAK-----------QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTM  551 (1106)
Q Consensus       484 ~iwd~~~~~~-----------~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~  551 (1106)
                      +|||+.++..           ...+.+|...|++++|++.   ..|++|+.||+|++||+++... ...+..|...|.++
T Consensus       238 rlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~---~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv  314 (524)
T 2j04_B          238 NFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP---TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSV  314 (524)
T ss_dssp             EEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS---SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEE
T ss_pred             EEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC---CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEE
Confidence            9999987642           3578899999999999753   4799999999999999987543 34567777777766


Q ss_pred             --EEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEe
Q 001295          552 --AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST  629 (1106)
Q Consensus       552 --~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~  629 (1106)
                        +|++++.                    .+|++++.|++|++||+++++.+..+.++.....|.+++|+|+++.+++++
T Consensus       315 ~~~~s~~g~--------------------~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~  374 (524)
T 2j04_B          315 STAYSDFED--------------------TVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSD  374 (524)
T ss_dssp             EEECCTTSC--------------------CEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEEC
T ss_pred             EEEcCCCCC--------------------eEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeC
Confidence              3444441                    479999999999999999988777766554323478999999999999999


Q ss_pred             CCCcEEEEEccCC
Q 001295          630 NDNGIKILATSDG  642 (1106)
Q Consensus       630 ~dg~i~iwd~~~~  642 (1106)
                      .|++|++||++++
T Consensus       375 ~d~tv~lwd~~~~  387 (524)
T 2j04_B          375 GASSLRAVPSRAA  387 (524)
T ss_dssp             SSSEEEEEETTCT
T ss_pred             CCCcEEEEECccc
Confidence            9999999998765

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=100.00  E-value=9.9e-35  Score=372.59  Aligned_cols=526  Identities=11%  Similarity=0.058  Sum_probs=371.5

Q ss_pred             CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEE
Q 001295          349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  428 (1106)
Q Consensus       349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  428 (1106)
                      +...+.+.+|||  ++ ||..+. +.|.+|++.+++...                    +.+|...|.+++|||||++||
T Consensus        13 ~~~~~~~~~~S~--~~-iaf~~~-~~l~~~~~~gg~~~~--------------------lt~~~~~v~~~~~SPDG~~la   68 (1045)
T 1k32_A           13 MPNLLLNPDIHG--DR-IIFVCC-DDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIA   68 (1045)
T ss_dssp             CCCCCEEEEEET--TE-EEEEET-TEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEE
T ss_pred             ccceEeCcEEeC--CE-EEEEEC-CcEEEEECCCCcEEE--------------------eeeCCCcccCeEECCCCCEEE
Confidence            456789999996  44 555554 789999998876543                    578999999999999999999


Q ss_pred             EEeCC------CeEEEEEccCCceeeeeeeeccccCCe-------eEEEEcCCCCceEEEEecCC------CcEEEEeCC
Q 001295          429 VAYSR------HIVQIYSYHGGDEVRQHLEIDAHVGGV-------NDIAFSHPNKQLCVITCGDD------KTIKVWDAT  489 (1106)
Q Consensus       429 s~~~d------~~v~iwd~~~~~~~~~~~~l~~h~~~V-------~~~~~s~d~~~~~l~s~~~d------~~i~iwd~~  489 (1106)
                      +++.+      ..|++||+.+++..    .+..|...+       ..++|+|||+  ++++++.+      ..|++||+.
T Consensus        69 ~~s~~~~~~~~~~i~~~d~~~g~~~----~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~  142 (1045)
T 1k32_A           69 IRVMRGSSLNTADLYFYNGENGEIK----RITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVEND  142 (1045)
T ss_dssp             EEEEESTTCCEEEEEEEETTTTEEE----ECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGG
T ss_pred             EEEeeccCCCCCeEEEEECCCCCeE----EcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECC
Confidence            88643      47999999987632    477888888       9999999998  67777754      468888887


Q ss_pred             CCceeEEEeccCCCeEEEeccccCCceEEEEEecC------------CeEEEEeCCCCCceeEeeCCCCeeEEEEEecCC
Q 001295          490 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD------------GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG  557 (1106)
Q Consensus       490 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~  557 (1106)
                      +++.. .+..+.  ...++|++   | ++++++.+            ...++|..........+..+...+.++.|+++ 
T Consensus       143 ~g~~~-~l~~~~--~~~~~~sp---G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-  214 (1045)
T 1k32_A          143 GINFV-PLNLGP--ATHILFAD---G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-  214 (1045)
T ss_dssp             GTEEE-ECCSCS--CSEEEEET---T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-
T ss_pred             CCCeE-EecCCC--cceeeeCC---C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-
Confidence            77653 333332  33556654   5 78887532            34555543332333344455555555555544 


Q ss_pred             CeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCC-cceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEE
Q 001295          558 TRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI  636 (1106)
Q Consensus       558 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i  636 (1106)
                                           ..+++++.++.+.+|.+.. +.....+..+.   .+...+|+|||++|+.+. ++.|++
T Consensus       215 ---------------------~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~---~~~~~~~SpDG~~la~~~-~~~i~~  269 (1045)
T 1k32_A          215 ---------------------RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT---DYYPRHLNTDGRRILFSK-GGSIYI  269 (1045)
T ss_dssp             ---------------------EEEEEECTTSSCEEEEEETTSCSCEECCCCC---SSCEEEEEESSSCEEEEE-TTEEEE
T ss_pred             ---------------------EEEEEEeccCceEEEEEeCCCCcceEecCCC---CcceeeEcCCCCEEEEEe-CCEEEE
Confidence                                 2456677788888997653 44445554443   367789999999998885 789999


Q ss_pred             EEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCC
Q 001295          637 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND  716 (1106)
Q Consensus       637 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  716 (1106)
                      |+.... . +..+..+...                                                             
T Consensus       270 ~d~~~~-~-l~~l~~~~~~-------------------------------------------------------------  286 (1045)
T 1k32_A          270 FNPDTE-K-IEKIEIGDLE-------------------------------------------------------------  286 (1045)
T ss_dssp             ECTTTC-C-EEECCCCCCC-------------------------------------------------------------
T ss_pred             ecCCce-E-eeeeccCccc-------------------------------------------------------------
Confidence            987322 1 1111110000                                                             


Q ss_pred             ceeeEecCCCCCCccceecccCccccccceEEEEEc-CCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCC
Q 001295          717 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFT-NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPP  795 (1106)
Q Consensus       717 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~  795 (1106)
                                   .....     ..+...+..++|+ |+|+.+++++ ++.+.+|++.                      
T Consensus       287 -------------~~~~~-----~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~----------------------  325 (1045)
T 1k32_A          287 -------------SPEDR-----IISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVS----------------------  325 (1045)
T ss_dssp             -------------BCCSE-----EEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTT----------------------
T ss_pred             -------------ccccc-----cccccccceeeecCCCCCEEEEEE-cCEEEEEcCC----------------------
Confidence                         00000     1145678899999 9999888887 7788888754                      


Q ss_pred             CCCccccccCCCCCCC-CeeEEEEecCCCEEEEEe-CCeEE-EEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeC
Q 001295          796 SGIMMTNDVTDSNPEE-AVPCFALSKNDSYVMSAS-GGKIS-LFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD  872 (1106)
Q Consensus       796 ~~~~~~~~~~~~~~~~-~v~~l~~s~~~~~l~~~s-dg~i~-vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~  872 (1106)
                      ++....  +.  .+.. .+..++|+ ||+.|++++ ++.+. +|++.+++... +.+|...+..++||| |+++||+++.
T Consensus       326 ~~~~~~--~~--~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~Sp-DG~~la~~~~  398 (1045)
T 1k32_A          326 GTYVLK--VP--EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDR-NGKFAVVAND  398 (1045)
T ss_dssp             SSBEEE--CS--CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECT-TSSEEEEEET
T ss_pred             CCceEE--cc--CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECC-CCCEEEEECC
Confidence            222221  11  1555 78999999 999999988 57788 89998776543 447888899999999 9999999999


Q ss_pred             CCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCC----------cEEEEeCCCcccccceeecccCCCCC
Q 001295          873 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS----------QLCVWSSDGWEKQKNRFLQIPTGRTP  942 (1106)
Q Consensus       873 dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg----------~i~vwd~~~~~~~~~~~~~~~~~~~~  942 (1106)
                      ++.|++||+.+++....+.+|...|.+++|||||++|++++.++          .|++||+.+++.      .....+. 
T Consensus       399 ~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~------~~l~~~~-  471 (1045)
T 1k32_A          399 RFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI------FAATTEN-  471 (1045)
T ss_dssp             TSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE------EECSCSS-
T ss_pred             CCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcE------EEeeCCC-
Confidence            99999999999998888888999999999999999999887654          899999988541      1122222 


Q ss_pred             CCCCCceEEEcCCCcEEEE-EeCCeEEEEecCCceE-----------------------------------------eee
Q 001295          943 TAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLEC-----------------------------------------VKQ  980 (1106)
Q Consensus       943 ~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d~~~~~~-----------------------------------------~~~  980 (1106)
                        ..+..++|+|||++|+. +.++...+|+......                                         .+.
T Consensus       472 --~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~  549 (1045)
T 1k32_A          472 --SHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRS  549 (1045)
T ss_dssp             --SBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGC
T ss_pred             --cccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHce
Confidence              25678999999999988 4555555665432211                                         000


Q ss_pred             cccCCCCCCeeEEEECCCCCEEEE-------------EEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEE
Q 001295          981 WVPRESSAPITHATFSCDSQLVYA-------------CFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAA 1047 (1106)
Q Consensus       981 ~~~~~h~~~v~~l~~s~d~~~l~t-------------~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 1047 (1106)
                      .....|...+..++++|||+++++             ...+..|++||+.+++.....       .+     +.  .++|
T Consensus       550 ~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~-------~~-----v~--~~~~  615 (1045)
T 1k32_A          550 SPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK-------NN-----LT--DLRL  615 (1045)
T ss_dssp             EECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE-------EE-----EE--EEEE
T ss_pred             EEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee-------cC-----cc--eEEE
Confidence            111245678999999999988875             123557899999988754222       11     33  7899


Q ss_pred             eCCCCCEEEEEeCCCcEEEEeecCCC
Q 001295         1048 HPQEPNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus      1048 ~~~d~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
                      +| ||+.|++++.| .|++||+.+++
T Consensus       616 S~-DG~~l~~~~~~-~i~~~d~~~~~  639 (1045)
T 1k32_A          616 SA-DRKTVMVRKDD-GKIYTFPLEKP  639 (1045)
T ss_dssp             CT-TSCEEEEEETT-SCEEEEESSCT
T ss_pred             CC-CCCEEEEEcCC-cEEEEeCccCc
Confidence            99 79999998866 89999998876

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=3.9e-36  Score=346.55  Aligned_cols=346  Identities=12%  Similarity=0.109  Sum_probs=277.3

Q ss_pred             cCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCc
Q 001295          413 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA  492 (1106)
Q Consensus       413 ~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~  492 (1106)
                      ..+++++|+|+|++|++++.|+.|++||+.+++...   .+..| ..+....|+++++  +|++|+.|+.|++||+.+++
T Consensus        57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~  130 (420)
T 3vl1_A           57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNL  130 (420)
T ss_dssp             BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCE
T ss_pred             ccccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcc
Confidence            345689999999999999999999999999876544   34455 4455667899999  89999999999999999999


Q ss_pred             eeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEE
Q 001295          493 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV  572 (1106)
Q Consensus       493 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~  572 (1106)
                      ....+.+|...|.+++|+++  +.+|++++.|+.|++||+++.+....+..|...|.+++|+|+++              
T Consensus       131 ~~~~~~~h~~~v~~~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~--------------  194 (420)
T 3vl1_A          131 QREIDQAHVSEITKLKFFPS--GEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGR--------------  194 (420)
T ss_dssp             EEEETTSSSSCEEEEEECTT--SSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTT--------------
T ss_pred             eeeecccccCccEEEEECCC--CCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCC--------------
Confidence            99888999999999999764  47999999999999999999888888888888777777777665              


Q ss_pred             EEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCC-CCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcc
Q 001295          573 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG-GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN  651 (1106)
Q Consensus       573 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  651 (1106)
                             +|++++.|+.|++||+.+++.+..+..+. +...+.+++|.+++...                    ..    
T Consensus       195 -------~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------------------~~----  243 (420)
T 3vl1_A          195 -------NVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ--------------------LH----  243 (420)
T ss_dssp             -------EEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS--------------------CG----
T ss_pred             -------EEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce--------------------ee----
Confidence                   79999999999999999999998887542 33456666665432110                    00    


Q ss_pred             cccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCcc
Q 001295          652 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ  731 (1106)
Q Consensus       652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~  731 (1106)
                                                                                                      
T Consensus       244 --------------------------------------------------------------------------------  243 (420)
T 3vl1_A          244 --------------------------------------------------------------------------------  243 (420)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCC
Q 001295          732 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE  811 (1106)
Q Consensus       732 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  811 (1106)
                              ..+...+.+++|+|+++++++++.||.|++||+..                      +........  .|..
T Consensus       244 --------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~----------------------~~~~~~~~~--~~~~  291 (420)
T 3vl1_A          244 --------EISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFS----------------------KEQTIQLPS--KFTC  291 (420)
T ss_dssp             --------GGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTT----------------------CCEEEEECC--TTSS
T ss_pred             --------ecccCcccceEEcCCCCEEEEEcCCCeEEEEECCC----------------------CceeEEccc--ccCC
Confidence                    01334566778899999999999999999998753                      222221122  2788


Q ss_pred             CeeEEEEecCCC-EEEEEe-CCeEEEEEcCCCce-eeeecC-CCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecc---
Q 001295          812 AVPCFALSKNDS-YVMSAS-GGKISLFNMMTFKT-MATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD---  884 (1106)
Q Consensus       812 ~v~~l~~s~~~~-~l~~~s-dg~i~vwd~~~~~~-~~~~~~-~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~---  884 (1106)
                      .|.+++|+|+++ +|++++ ||.|++||+.+++. +..+.. |...|.++.+ + ++++|++++.||.|++|++...   
T Consensus       292 ~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~l~s~~~d~~v~iw~~~~~~~~  369 (420)
T 3vl1_A          292 SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-A-AGALFVSSGFDTSIKLDIISDPESE  369 (420)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-E-TTEEEEEETTTEEEEEEEECCTTCC
T ss_pred             CceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-C-CCCEEEEecCCccEEEEeccCCCCC
Confidence            999999999999 999998 89999999998754 666666 5667777755 5 6789999999999999998763   


Q ss_pred             ------eEEEEecCcccCeeEEEEecCCC---EEEEEcCCCcEEEEeCCC
Q 001295          885 ------EVKSKLKGHSKRITGLAFSHALN---VLVSSGADSQLCVWSSDG  925 (1106)
Q Consensus       885 ------~~~~~l~~h~~~V~~l~~s~d~~---~l~s~s~Dg~i~vwd~~~  925 (1106)
                            .....+.+|.+.|.+++|+|++.   .|++++.+|.+.+|+++.
T Consensus       370 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          370 RPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             SCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred             ccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence                  22234667999999999999999   788888899999999875

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.8e-35  Score=336.13  Aligned_cols=275  Identities=14%  Similarity=0.221  Sum_probs=206.4

Q ss_pred             ceeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEc
Q 001295          342 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  421 (1106)
Q Consensus       342 ~~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s  421 (1106)
                      .+...+.|.+.|+|++|||||++ ||+|+ +++++||++.+++.+.......-... ............+...|.+++|+
T Consensus        56 ~~~~~~~h~~~V~~v~fspdg~~-la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~v~~v~~s  132 (393)
T 1erj_A           56 ELHKSLDHTSVVCCVKFSNDGEY-LATGC-NKTTQVYRVSDGSLVARLSDDSAANK-DPENLNTSSSPSSDLYIRSVCFS  132 (393)
T ss_dssp             EEEEEEECSSCCCEEEECTTSSE-EEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEEC
T ss_pred             eeEEecCCCCEEEEEEECCCCCE-EEEEc-CCcEEEEEecCCCEEEEecCcccccc-ccccccccccCCCceeEEEEEEC
Confidence            34556679999999999999995 88876 78999999999887653211000000 00000011112344569999999


Q ss_pred             cCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccC
Q 001295          422 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE  501 (1106)
Q Consensus       422 pdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~  501 (1106)
                      |||++||+|+.|++|+|||+.+++.+.   .+.+|...|.+++|+|+++  +|++++.|++|++||++++++...+. +.
T Consensus       133 ~dg~~l~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~  206 (393)
T 1erj_A          133 PDGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLS-IE  206 (393)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEE-CS
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEEE-cC
Confidence            999999999999999999999987655   6889999999999999999  89999999999999999999888886 56


Q ss_pred             CCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEE
Q 001295          502 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF  581 (1106)
Q Consensus       502 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l  581 (1106)
                      ..+.+++|++. ++.+|++|+.||.|++||++++.....+.....             .. ..+...+.+++|+|++.+|
T Consensus       207 ~~v~~~~~~~~-~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~-------------~~-~~h~~~v~~v~~~~~g~~l  271 (393)
T 1erj_A          207 DGVTTVAVSPG-DGKYIAAGSLDRAVRVWDSETGFLVERLDSENE-------------SG-TGHKDSVYSVVFTRDGQSV  271 (393)
T ss_dssp             SCEEEEEECST-TCCEEEEEETTSCEEEEETTTCCEEEEEC--------------------CCCSSCEEEEEECTTSSEE
T ss_pred             CCcEEEEEECC-CCCEEEEEcCCCcEEEEECCCCcEEEeeccccc-------------CC-CCCCCCEEEEEECCCCCEE
Confidence            78999998752 557999999999999999988765554421100             00 0112245555566666689


Q ss_pred             EEEECCCeEEEEECCCc------------ceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295          582 LAAGDDFSIKFWDMDSV------------QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       582 ~~~~~d~~i~iwd~~~~------------~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                      ++++.|+.|++||+.+.            .+...+.+|  ...|.+++|+|++.+|++|+.|+.|++||..++
T Consensus       272 ~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~  342 (393)
T 1erj_A          272 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH--KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG  342 (393)
T ss_dssp             EEEETTSEEEEEEC---------------CEEEEEECC--SSCEEEEEECGGGCEEEEEETTSEEEEEETTTC
T ss_pred             EEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecc--cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence            99999999999999763            234455544  457999999999999999999999999998776

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=7.2e-36  Score=333.04  Aligned_cols=320  Identities=13%  Similarity=0.154  Sum_probs=259.6

Q ss_pred             CCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCC
Q 001295          411 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN  490 (1106)
Q Consensus       411 h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~  490 (1106)
                      |.+.|.+++|||||++++++..++.+.+|+.......  . ...+|...|.+++|+|+++  ++++++ |+.|++||+.+
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~h~~~v~~~~~~~~~~--~l~~~~-dg~i~iw~~~~   81 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQ--I-NTLNHGEVVCAVTISNPTR--HVYTGG-KGCVKVWDISH   81 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEE--E-EEECCSSCCCEEEECSSSS--EEEEEC-BSEEEEEETTS
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCCcccc--c-eeccCCCceEEEEEecCCc--EEEEcC-CCeEEEEECCC
Confidence            4568999999999999999887777777655443222  2 3447999999999999999  788888 99999999987


Q ss_pred             Cce---eEEEe--ccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCC--ceeEeeCCCCeeEEEEEecCCCeEEEe
Q 001295          491 GAK---QYIFE--GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG--SRVDYEAPGRWCTTMAYSADGTRTYQG  563 (1106)
Q Consensus       491 ~~~---~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~~~~~  563 (1106)
                      +..   +..+.  +|...|.+++|++  ++++|++++.||.|++||+.+..  ....+..+...+.+++|+|        
T Consensus        82 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~--------  151 (337)
T 1gxr_A           82 PGNKSPVSQLDCLNRDNYIRSCKLLP--DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP--------  151 (337)
T ss_dssp             TTCCSCSEEEECSCTTSBEEEEEECT--TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT--------
T ss_pred             CCceeeeecccccCCCCcEEEEEEcC--CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECC--------
Confidence            653   34444  7999999999876  45799999999999999998766  2334444555555555554        


Q ss_pred             eeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCc
Q 001295          564 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI  643 (1106)
Q Consensus       564 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~  643 (1106)
                                   +++++++++.|+.|++||+.+++.+..+..+  ...+.+++|+|++++|++++.||.|++||+.++.
T Consensus       152 -------------~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~  216 (337)
T 1gxr_A          152 -------------DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGH--TDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR  216 (337)
T ss_dssp             -------------TSSEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             -------------CCCEEEEEeCCCcEEEEeCCCCceeeeeecc--cCceEEEEECCCCCEEEEEecCCcEEEEECCCCc
Confidence                         4558999999999999999999999888765  4479999999999999999999999999986551


Q ss_pred             hhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEec
Q 001295          644 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL  723 (1106)
Q Consensus       644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~  723 (1106)
                       ....                                                                           
T Consensus       217 -~~~~---------------------------------------------------------------------------  220 (337)
T 1gxr_A          217 -QLQQ---------------------------------------------------------------------------  220 (337)
T ss_dssp             -EEEE---------------------------------------------------------------------------
T ss_pred             -eEee---------------------------------------------------------------------------
Confidence             0000                                                                           


Q ss_pred             CCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccc
Q 001295          724 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND  803 (1106)
Q Consensus       724 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  803 (1106)
                                                                    .                                 
T Consensus       221 ----------------------------------------------~---------------------------------  221 (337)
T 1gxr_A          221 ----------------------------------------------H---------------------------------  221 (337)
T ss_dssp             ----------------------------------------------E---------------------------------
T ss_pred             ----------------------------------------------e---------------------------------
Confidence                                                          0                                 


Q ss_pred             cCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEee
Q 001295          804 VTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR  882 (1106)
Q Consensus       804 ~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~  882 (1106)
                          .+...+.+++|+|+++++++++ ++.|++||+.+++. ..+..|...|.+++|+| ++++|++++.||.|++||+.
T Consensus       222 ----~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~  295 (337)
T 1gxr_A          222 ----DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTP  295 (337)
T ss_dssp             ----ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETT
T ss_pred             ----cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECC-CCCEEEEecCCCcEEEEECC
Confidence                0344577788888888888887 78888898887665 45677899999999999 89999999999999999999


Q ss_pred             cceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeC
Q 001295          883 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS  923 (1106)
Q Consensus       883 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~  923 (1106)
                      +++.+... .|...|++++|+|++++|++++.||.|++|++
T Consensus       296 ~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          296 YGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             TCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence            98877544 58899999999999999999999999999996

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=9.1e-35  Score=323.96  Aligned_cols=254  Identities=19%  Similarity=0.296  Sum_probs=200.3

Q ss_pred             eeec-cCCCCcEEEEE-----ec-CCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeE
Q 001295          344 TRTL-NQGSSPMSMDF-----HP-VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN  416 (1106)
Q Consensus       344 ~~~~-~h~~~v~~~~~-----sp-~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~  416 (1106)
                      ...+ +|.+.|++++|     ++ +++ +|++|+.|++|+|||+.+++....            .......+.+|...|.
T Consensus        14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~------------~~~~~~~l~~h~~~V~   80 (343)
T 2xzm_R           14 RGILEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGY------------FGIPHKALTGHNHFVS   80 (343)
T ss_dssp             EEEEECCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSB------------SEEEEEEECCCSSCEE
T ss_pred             eeeeccchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCcccc------------cccccchhccCCCceE
Confidence            3344 49999999999     77 888 599999999999999976542110            0001124789999999


Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEE
Q 001295          417 RVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI  496 (1106)
Q Consensus       417 ~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~  496 (1106)
                      +++|+|++.+|++|+.|++|++||+.+++.+.   .+.+|...|.+++|+|+++  +|++++.|++|++||+.. .....
T Consensus        81 ~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~---~~~~h~~~v~~v~~sp~~~--~l~s~~~d~~i~~wd~~~-~~~~~  154 (343)
T 2xzm_R           81 DLALSQENCFAISSSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNR--QILSAGAEREIKLWNILG-ECKFS  154 (343)
T ss_dssp             EEEECSSTTEEEEEETTSEEEEEETTSSCEEE---EEECCCSCEEEEEECSSTT--EEEEEETTSCEEEEESSS-CEEEE
T ss_pred             EEEECCCCCEEEEEcCCCcEEEEECCCCcEEE---EEcCCCCcEEEEEECCCCC--EEEEEcCCCEEEEEeccC-Cceee
Confidence            99999999999999999999999999987665   6789999999999999999  899999999999999874 33444


Q ss_pred             Ee---ccCCCeEEEeccccCC--------ceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeee
Q 001295          497 FE---GHEAPVYSVCPHHKEN--------IQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR  565 (1106)
Q Consensus       497 ~~---~h~~~v~~~~~~~~~~--------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~  565 (1106)
                      ..   +|...|.+++|++...        +.+|++++.||.|++||.. ......+..|...|.+++|+|++        
T Consensus       155 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~h~~~v~~~~~s~~g--------  225 (343)
T 2xzm_R          155 SAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFKAHESNVNHLSISPNG--------  225 (343)
T ss_dssp             CCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEEECCSSCEEEEEECTTS--------
T ss_pred             eecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEEcCccccceEEEECCCC--------
Confidence            33   7899999999876542        2689999999999999943 33444555666656655555555        


Q ss_pred             ccceeEEEEcCCCCEEEEEECCCeEEEEECC-CcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295          566 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD-SVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       566 ~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                                   ++|++++.|+.|++||+. .......+.. .  ..|.+++|+|++.+++++ .|+.|++|++.++
T Consensus       226 -------------~~l~sgs~dg~v~iwd~~~~~~~~~~~~~-~--~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~  286 (343)
T 2xzm_R          226 -------------KYIATGGKDKKLLIWDILNLTYPQREFDA-G--STINQIAFNPKLQWVAVG-TDQGVKIFNLMTQ  286 (343)
T ss_dssp             -------------SEEEEEETTCEEEEEESSCCSSCSEEEEC-S--SCEEEEEECSSSCEEEEE-ESSCEEEEESSSC
T ss_pred             -------------CEEEEEcCCCeEEEEECCCCcccceeecC-C--CcEEEEEECCCCCEEEEE-CCCCEEEEEeCCC
Confidence                         489999999999999994 4445555432 2  359999999999988765 4778999998765

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-35  Score=325.38  Aligned_cols=253  Identities=17%  Similarity=0.231  Sum_probs=196.4

Q ss_pred             ccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCE
Q 001295          347 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  426 (1106)
Q Consensus       347 ~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~  426 (1106)
                      .+|.+.|++++|+|+   +||+|+.|++|+|||+.++.......+               ...+|...|.+++|+|++++
T Consensus        11 ~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~~---------------~~~~h~~~v~~v~~sp~~~~   72 (330)
T 2hes_X           11 KLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDVL---------------DETAHKKAIRSVAWRPHTSL   72 (330)
T ss_dssp             ECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEEE---------------CTTCCCSCEEEEEECTTSSE
T ss_pred             ccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEEE---------------ecCCccCCEEEEEECCCCCE
Confidence            349999999999998   599999999999999987532111100               02349999999999999999


Q ss_pred             EEEEeCCCeEEEEEccCCc----eeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCC----CceeEEEe
Q 001295          427 FGVAYSRHIVQIYSYHGGD----EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN----GAKQYIFE  498 (1106)
Q Consensus       427 las~~~d~~v~iwd~~~~~----~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~----~~~~~~~~  498 (1106)
                      ||+|+.|++|+|||+....    .......+.+|...|.+++|+|+++  +|++|+.|++|++||+..    .+++..+.
T Consensus        73 las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~~~~~~~~~~  150 (330)
T 2hes_X           73 LAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGEEYECISVLQ  150 (330)
T ss_dssp             EEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCCCCEEEEEEC
T ss_pred             EEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCCCeEEEEEec
Confidence            9999999999999996432    1233446889999999999999999  899999999999999943    25678899


Q ss_pred             ccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCC--CceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcC
Q 001295          499 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL--GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT  576 (1106)
Q Consensus       499 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~  576 (1106)
                      +|...|.+++|+++  +.+|++++.|++|++||....  .....+..|...|.+++|+|++.                  
T Consensus       151 ~h~~~v~~v~~~p~--~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~------------------  210 (330)
T 2hes_X          151 EHSQDVKHVIWHPS--EALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEG------------------  210 (330)
T ss_dssp             CCSSCEEEEEECSS--SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSS------------------
T ss_pred             cCCCceEEEEECCC--CCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCC------------------
Confidence            99999999999765  479999999999999998765  34556667777777777766621                  


Q ss_pred             CCCEEEEEECCCeEEEEECCCc--------ceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295          577 TKNRFLAAGDDFSIKFWDMDSV--------QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       577 ~~~~l~~~~~d~~i~iwd~~~~--------~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                       +.++++++.|++|++||+.++        .....+.. .+...|.+++|++++ +|++++.||.|++|+..++
T Consensus       211 -~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~  281 (330)
T 2hes_X          211 -VFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPD-VHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDG  281 (330)
T ss_dssp             -SCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCS-CCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETT
T ss_pred             -eeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccc-ccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCC
Confidence             336899999999999998764        23333332 135579999999765 8999999999999998654

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-36  Score=352.48  Aligned_cols=373  Identities=11%  Similarity=0.141  Sum_probs=268.3

Q ss_pred             EEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc-CCCEEEEEeCCCe
Q 001295          357 DFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFGVAYSRHI  435 (1106)
Q Consensus       357 ~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~las~~~d~~  435 (1106)
                      .|+|+++. +++++      .|+. +++.+..                  +..+|.+.|++++|+| ++++||+|+.||+
T Consensus        34 ~f~~~~~~-~~~~~------~w~~-~g~~~~~------------------~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~   87 (437)
T 3gre_A           34 EFGPIQEI-VRSPN------MGNL-RGKLIAT------------------LMENEPNSITSSAVSPGETPYLITGSDQGV   87 (437)
T ss_dssp             GGCCCCCC-CCCCC------GGGC-CCCEEEE------------------ECTTTTSCEEEEEEECSSSCEEEEEETTSE
T ss_pred             hcCCcccc-ccccc------cccc-cceEEee------------------eccCCCCceEEEEECCCCCCEEEEecCCce
Confidence            37888885 65544      4774 3555443                  2388999999999999 9999999999999


Q ss_pred             EEEEEccC---CceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCC---CCceeEEEec----------
Q 001295          436 VQIYSYHG---GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT---NGAKQYIFEG----------  499 (1106)
Q Consensus       436 v~iwd~~~---~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~---~~~~~~~~~~----------  499 (1106)
                      |+|||+.+   +........+ +|...|.+++|+|+++  +|++|+.|++|++||+.   +++.+..+.+          
T Consensus        88 v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~  164 (437)
T 3gre_A           88 IKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKN  164 (437)
T ss_dssp             EEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGG
T ss_pred             EEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccC
Confidence            99999987   5433323233 5999999999999999  89999999999999995   6666555443          


Q ss_pred             --cCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeC--CCCeeEEEEEecCCCeEEEeeeccceeEEEEc
Q 001295          500 --HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA--PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD  575 (1106)
Q Consensus       500 --h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~  575 (1106)
                        +...+.++.+...+++.+|++++.||.|++||+++.+....+..  |...|.+++|+|++                  
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~------------------  226 (437)
T 3gre_A          165 FGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEEC------------------  226 (437)
T ss_dssp             GSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTS------------------
T ss_pred             cccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCC------------------
Confidence              34455555554556779999999999999999998887777766  55556666555554                  


Q ss_pred             CCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEc----cCCCEEEEEeCCCcEEEEEccCCchhhhhhcc
Q 001295          576 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN----KDGCLLAVSTNDNGIKILATSDGIRLLRTFEN  651 (1106)
Q Consensus       576 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  651 (1106)
                         ++|++++.||.|++||+++++.+..+.... ...|.+++|+    +++.+|++|+.||.|++||+.++ +....+.+
T Consensus       227 ---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~  301 (437)
T 3gre_A          227 ---CVLILGTTRGIIDIWDIRFNVLIRSWSFGD-HAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG-HCQYAFIN  301 (437)
T ss_dssp             ---CEEEEEETTSCEEEEETTTTEEEEEEBCTT-CEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTT-EEEEEEES
T ss_pred             ---CEEEEEcCCCeEEEEEcCCccEEEEEecCC-CCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCC-cEEEEEEc
Confidence               489999999999999999999998886322 3368899555    56889999999999999999887 44444433


Q ss_pred             cccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCcc
Q 001295          652 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ  731 (1106)
Q Consensus       652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~  731 (1106)
                      |.                                                                              
T Consensus       302 ~~------------------------------------------------------------------------------  303 (437)
T 3gre_A          302 SD------------------------------------------------------------------------------  303 (437)
T ss_dssp             SS------------------------------------------------------------------------------
T ss_pred             CC------------------------------------------------------------------------------
Confidence            22                                                                              


Q ss_pred             ceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCC
Q 001295          732 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE  811 (1106)
Q Consensus       732 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  811 (1106)
                                  ..+..+.|+|+++.+    .+..                                     +.+..|..
T Consensus       304 ------------~~~~~~~~~~~~~~l----~~~~-------------------------------------~~~~~~~~  330 (437)
T 3gre_A          304 ------------EQPSMEHFLPIEKGL----EELN-------------------------------------FCGIRSLN  330 (437)
T ss_dssp             ------------SCCCGGGGSCBCSSG----GGCC-------------------------------------CCCCCSGG
T ss_pred             ------------CCCccceeccccccc----ccce-------------------------------------ecccccCC
Confidence                        222222333433322    0000                                     11112778


Q ss_pred             CeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCC---CeeEEEEecCCCceEEEeeCCCcEEEEEeecceEE
Q 001295          812 AVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPP---AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK  887 (1106)
Q Consensus       812 ~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~---~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~  887 (1106)
                      .|++++|+ ++++|++++ ||.|++||+.+++....+.+|..   .+....+++ ...+++..        |+...+...
T Consensus       331 ~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~  400 (437)
T 3gre_A          331 ALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTA-NLTMLLRK--------MKRTSTHSV  400 (437)
T ss_dssp             GGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEET-TEEEEEEE--------CC-------
T ss_pred             ceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeec-ceEEEEEe--------ccccccccc
Confidence            89999999 788999998 99999999999999988887643   455566666 44444433        333344555


Q ss_pred             EEecCcccCeeEEEEecC--CCEEEEEcCCCcEEEEe
Q 001295          888 SKLKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWS  922 (1106)
Q Consensus       888 ~~l~~h~~~V~~l~~s~d--~~~l~s~s~Dg~i~vwd  922 (1106)
                      ..+..|.+.|++++|+++  +.+|++|+.||.|+||+
T Consensus       401 ~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          401 DDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             ------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             CcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence            666789999999999998  78999999999999995

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.1e-34  Score=336.72  Aligned_cols=317  Identities=20%  Similarity=0.327  Sum_probs=269.4

Q ss_pred             ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEE
Q 001295          407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  486 (1106)
Q Consensus       407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw  486 (1106)
                      .+.+|.+.|.. +++++|++|++|+.||+|++||+.+++.+.   .+.+|.+.|.+++|+  +.  ++++|+.|++|++|
T Consensus       113 ~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~~~dg~i~vw  184 (445)
T 2ovr_B          113 VLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR---TLVGHTGGVWSSQMR--DN--IIISGSTDRTLKVW  184 (445)
T ss_dssp             EEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE---ECCCCSSCEEEEEEE--TT--EEEEEETTSCEEEE
T ss_pred             EecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEE---EEcCCCCCEEEEEec--CC--EEEEEeCCCeEEEE
Confidence            36789887643 355679999999999999999999988665   678999999999997  44  79999999999999


Q ss_pred             eCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeec
Q 001295          487 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  566 (1106)
Q Consensus       487 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  566 (1106)
                      |+.+++.+..+.+|...|.++.++  +  ..+++|+.||.|++||+.+.+....+..+...+.++++  ++         
T Consensus       185 d~~~~~~~~~~~~h~~~v~~~~~~--~--~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~---------  249 (445)
T 2ovr_B          185 NAETGECIHTLYGHTSTVRCMHLH--E--KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DG---------  249 (445)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEE--T--TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CS---------
T ss_pred             ECCcCcEEEEECCCCCcEEEEEec--C--CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CC---------
Confidence            999999999999999999999974  2  57999999999999999998888888888777777766  33         


Q ss_pred             cceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhh
Q 001295          567 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL  646 (1106)
Q Consensus       567 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  646 (1106)
                                  +++++++.||.|++||+.+++.+..+..+  ...|.+++|  ++.++++++.||.|++||+.++. .+
T Consensus       250 ------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~-~~  312 (445)
T 2ovr_B          250 ------------RRVVSGAYDFMVKVWDPETETCLHTLQGH--TNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGN-CI  312 (445)
T ss_dssp             ------------SCEEEEETTSCEEEEEGGGTEEEEEECCC--SSCEEEEEE--CSSEEEEEETTSCEEEEETTTCC-EE
T ss_pred             ------------CEEEEEcCCCEEEEEECCCCcEeEEecCC--CCceEEEEE--CCCEEEEEeCCCeEEEEECCCCC-EE
Confidence                        36999999999999999999999998866  447888888  88999999999999999987651 11


Q ss_pred             hhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCC
Q 001295          647 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL  726 (1106)
Q Consensus       647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~  726 (1106)
                      ..+.                                                                            
T Consensus       313 ~~~~----------------------------------------------------------------------------  316 (445)
T 2ovr_B          313 HTLT----------------------------------------------------------------------------  316 (445)
T ss_dssp             EEEC----------------------------------------------------------------------------
T ss_pred             EEEc----------------------------------------------------------------------------
Confidence            0000                                                                            


Q ss_pred             CCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCC
Q 001295          727 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  806 (1106)
Q Consensus       727 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  806 (1106)
                                                                                                      
T Consensus       317 --------------------------------------------------------------------------------  316 (445)
T 2ovr_B          317 --------------------------------------------------------------------------------  316 (445)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecC---CCCCeeEEEEecCCCceEEEeeCCCcEEEEEee
Q 001295          807 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP---PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR  882 (1106)
Q Consensus       807 ~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~---~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~  882 (1106)
                       +|...+.++.+  +++++++++ ||.|++||+.+++.+..+..   |...|++++|+   +.+|++|+.||.|++||+.
T Consensus       317 -~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~v~iwd~~  390 (445)
T 2ovr_B          317 -GHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN---KNFVITSSDDGTVKLWDLK  390 (445)
T ss_dssp             -CCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC---SSEEEEEETTSEEEEEETT
T ss_pred             -CCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC---CCEEEEEeCCCeEEEEECC
Confidence             14445555555  466888888 89999999999998888876   78889999995   4699999999999999999


Q ss_pred             cceEEEEe-----cCcccCeeEEEEecCCCEEEEEcCCCc----EEEEeCCC
Q 001295          883 VDEVKSKL-----KGHSKRITGLAFSHALNVLVSSGADSQ----LCVWSSDG  925 (1106)
Q Consensus       883 ~~~~~~~l-----~~h~~~V~~l~~s~d~~~l~s~s~Dg~----i~vwd~~~  925 (1106)
                      +++.+..+     .+|.+.|++++|+|++.+|++++.||+    |.|||++.
T Consensus       391 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          391 TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             TCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence            99998888     578899999999999999999999998    99999976

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.2e-35  Score=324.32  Aligned_cols=291  Identities=13%  Similarity=0.165  Sum_probs=225.3

Q ss_pred             ccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEec
Q 001295          741 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK  820 (1106)
Q Consensus       741 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~  820 (1106)
                      +|...|.+++|+++  +|++++.|+.|++|++.....                    .... .+....|...|.+++|+|
T Consensus        12 ~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~--------------------~~~~-~~~~~~h~~~v~~v~~sp   68 (330)
T 2hes_X           12 LYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF--------------------TLID-VLDETAHKKAIRSVAWRP   68 (330)
T ss_dssp             CCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC--------------------EEEE-EECTTCCCSCEEEEEECT
T ss_pred             cCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe--------------------EEEE-EEecCCccCCEEEEEECC
Confidence            58899999999998  899999999999999763210                    0111 011113889999999999


Q ss_pred             CCCEEEEEe-CCeEEEEEcCC-------CceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeec----ceEEE
Q 001295          821 NDSYVMSAS-GGKISLFNMMT-------FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV----DEVKS  888 (1106)
Q Consensus       821 ~~~~l~~~s-dg~i~vwd~~~-------~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~----~~~~~  888 (1106)
                      ++++|++++ |++|++||+..       .+.+..+.+|...|.+++|+| ++++||+|+.|++|++||+..    .+++.
T Consensus        69 ~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~~~~~  147 (330)
T 2hes_X           69 HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECIS  147 (330)
T ss_dssp             TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCCEEEE
T ss_pred             CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCeEEEE
Confidence            999999999 99999999853       345677889999999999999 899999999999999999943    36778


Q ss_pred             EecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCC--CcEEEE-EeCC
Q 001295          889 KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD--QIHFLV-VHET  965 (1106)
Q Consensus       889 ~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~d--g~~l~~-~~d~  965 (1106)
                      .+.+|...|++++|+|++.+|++++.|++|++||+.++.   ..++....+|..   .|.+++|+|+  +.+|++ +.|+
T Consensus       148 ~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~---~~~~~~~~~h~~---~v~~~~~~~~~~~~~l~s~s~D~  221 (330)
T 2hes_X          148 VLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD---WECVAVLNGHEG---TVWSSDFDKTEGVFRLCSGSDDS  221 (330)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE---EEEEEEECCCSS---CEEEEEECCSSSSCEEEEEETTS
T ss_pred             EeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC---eeEEEEccCCCC---cEEEEEecCCCCeeEEEEEeCCC
Confidence            899999999999999999999999999999999987642   124455566653   7899999999  778888 5899


Q ss_pred             eEEEEecCCc--------eEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCcee--EEeeCCCcccCCCC
Q 001295          966 QLAIFETTKL--------ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL--RCRINPSAYLPAGV 1035 (1106)
Q Consensus       966 ~v~i~d~~~~--------~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~--~~~~~~~~~~~~~~ 1035 (1106)
                      .|++||+.++        .+...+. ..|...|++++|++++ +|++++.||+|+|||..+++.  .....      .+|
T Consensus       222 ~v~iw~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~------~~h  293 (330)
T 2hes_X          222 TVRVWKYMGDDEDDQQEWVCEAILP-DVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRA------LCH  293 (330)
T ss_dssp             CEEEEEEEEECTTSCEEEEEEEECC-SCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEES------CTT
T ss_pred             eEEEEEecCCCccccceeEEeeecc-cccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccc------ccc
Confidence            9999999765        3333333 2489999999999765 899999999999999988743  22221      233


Q ss_pred             CCCCccceEEEEeCC-CCCEEEEEeCCCcEEEEeecC
Q 001295         1036 SSSNVHPLVIAAHPQ-EPNEFALGLSDGGVHVFEPLE 1071 (1106)
Q Consensus      1036 ~~~~v~~~~~~~~~~-d~~~l~t~~~Dg~v~vW~~~~ 1071 (1106)
                      ....+.  .++|+|. ++++|++|+.||+|++|++.+
T Consensus       294 ~~~~v~--~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          294 GVYEIN--VVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             TTSCEE--EEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             ccceEE--EEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            332466  7899985 578999999999999999865

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.1e-34  Score=338.94  Aligned_cols=341  Identities=17%  Similarity=0.297  Sum_probs=265.4

Q ss_pred             ccCCCCcCe-EEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEE
Q 001295          407 LVKDPGVSV-NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV  485 (1106)
Q Consensus       407 ~~~~h~~~V-~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~i  485 (1106)
                      .+.+|...| .++.+  ++++|++|+.||+|++||+.+++.+.   .+.+|.+.|.+++|++++   ++++|+.||+|++
T Consensus       116 ~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~---~~~~h~~~V~~l~~~~~~---~l~s~s~dg~i~v  187 (464)
T 3v7d_B          116 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVRV  187 (464)
T ss_dssp             EEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECSTT---EEEEEETTSCEEE
T ss_pred             EEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEE---EEeCCCcCEEEEEEcCCC---EEEEEeCCCCEEE
Confidence            367888875 55555  67899999999999999999988665   678999999999999887   5999999999999


Q ss_pred             EeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCe-EEEee
Q 001295          486 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR-TYQGF  564 (1106)
Q Consensus       486 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~-~~~~~  564 (1106)
                      ||+.+++++..+.+|...|.+++|.+.+++.++++|+.||.|++||+.+............ ...+.+.+++.. .....
T Consensus       188 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  266 (464)
T 3v7d_B          188 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD-YPLVFHTPEENPYFVGVL  266 (464)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CC-SSEEESCGGGCTTEEEEE
T ss_pred             EECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCC-cceEeeccCCCeEEEEEc
Confidence            9999999999999999999999998878889999999999999999987665433222211 112222332221 11112


Q ss_pred             eccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCch
Q 001295          565 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR  644 (1106)
Q Consensus       565 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~  644 (1106)
                      ........+++++++++++++.|+.|++||+.+++.+..+..+  ...|.+++|+|+++++++|+.||.|++||+.++ +
T Consensus       267 ~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~-~  343 (464)
T 3v7d_B          267 RGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH--TDRIYSTIYDHERKRCISASMDTTIRIWDLENG-E  343 (464)
T ss_dssp             CCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEEETTTTEEEEEETTSCEEEEETTTT-E
T ss_pred             cCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC--CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-c
Confidence            2222334445788889999999999999999999999998766  457999999999999999999999999998765 1


Q ss_pred             hhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecC
Q 001295          645 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT  724 (1106)
Q Consensus       645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~  724 (1106)
                      .+..+                                                                           
T Consensus       344 ~~~~~---------------------------------------------------------------------------  348 (464)
T 3v7d_B          344 LMYTL---------------------------------------------------------------------------  348 (464)
T ss_dssp             EEEEE---------------------------------------------------------------------------
T ss_pred             EEEEE---------------------------------------------------------------------------
Confidence            11100                                                                           


Q ss_pred             CCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCcccccc
Q 001295          725 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV  804 (1106)
Q Consensus       725 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  804 (1106)
                                                                                                      
T Consensus       349 --------------------------------------------------------------------------------  348 (464)
T 3v7d_B          349 --------------------------------------------------------------------------------  348 (464)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeec
Q 001295          805 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV  883 (1106)
Q Consensus       805 ~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~  883 (1106)
                        .+|...|.+++++  +++|++++ ||.|++||+.++....... +...+..++|++ ++++|++|+ ||.|++||+.+
T Consensus       349 --~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~-dg~i~iwd~~~  421 (464)
T 3v7d_B          349 --QGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYV-SDNILVSGS-ENQFNIYNLRS  421 (464)
T ss_dssp             --CCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEE-CSSEEEEEE-TTEEEEEETTT
T ss_pred             --eCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEe-CCCEEEEec-CCeEEEEECCC
Confidence              0156667777775  46777777 7888888888776655554 566788899999 899999998 89999999999


Q ss_pred             ceEEEE-ecCcccCeeEEEEecCCCEEEEEcCCCcEEEEe
Q 001295          884 DEVKSK-LKGHSKRITGLAFSHALNVLVSSGADSQLCVWS  922 (1106)
Q Consensus       884 ~~~~~~-l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd  922 (1106)
                      ++++.. +.+|...|++++|+ +..++++++.||.+.+|-
T Consensus       422 g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~  460 (464)
T 3v7d_B          422 GKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI  460 (464)
T ss_dssp             CCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred             CcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence            999886 67899999999997 445566666777665553

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=9.6e-35  Score=324.37  Aligned_cols=308  Identities=19%  Similarity=0.265  Sum_probs=248.8

Q ss_pred             ceeeecc-CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEE
Q 001295          342 TVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW  420 (1106)
Q Consensus       342 ~~~~~~~-h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~  420 (1106)
                      .+..+|. |++.|++|+|+|++..+||||+.||+|+|||+.+++......              ...+.+|...|.+++|
T Consensus        29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~--------------~~~l~~h~~~V~~~~~   94 (340)
T 4aow_A           29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIP--------------QRALRGHSHFVSDVVI   94 (340)
T ss_dssp             EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEE--------------EEEECCCSSCEEEEEE
T ss_pred             EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccccee--------------eEEEeCCCCCEEEEEE
Confidence            3444555 999999999999854379999999999999998765432111              1147899999999999


Q ss_pred             ccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCcee-EEEec
Q 001295          421 SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ-YIFEG  499 (1106)
Q Consensus       421 spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~  499 (1106)
                      +|||++|++++.|+.|++|+...+....   ....+...+..+.+++++.  +|++++.|+.+++||+...... ..+.+
T Consensus        95 s~dg~~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~d~~~~~~~~~~~~~  169 (340)
T 4aow_A           95 SSDGQFALSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLWNTLGVCKYTVQDES  169 (340)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSS
T ss_pred             CCCCCEEEEEcccccceEEeecccceee---eecCCCCceeEEEEeecCc--cceeecCCCeEEEEEeCCCceEEEEecc
Confidence            9999999999999999999999876554   4567888999999999999  7999999999999998766543 45678


Q ss_pred             cCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCC
Q 001295          500 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN  579 (1106)
Q Consensus       500 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~  579 (1106)
                      |...+..++|++.....++++++.|+.|++||+++......+..|...|.+++|+|+++                     
T Consensus       170 ~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~---------------------  228 (340)
T 4aow_A          170 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS---------------------  228 (340)
T ss_dssp             CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS---------------------
T ss_pred             ccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCC---------------------
Confidence            99999999998887778899999999999999998888777777777777777766665                     


Q ss_pred             EEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccC
Q 001295          580 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT  659 (1106)
Q Consensus       580 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  659 (1106)
                      +|++++.|+.|++||+.+++.+..+..+.   .+.+++|+|++.+++ ++.|+.|++||+.++ ..+..+..+..     
T Consensus       229 ~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~-~~~d~~i~iwd~~~~-~~~~~~~~~~~-----  298 (340)
T 4aow_A          229 LCASGGKDGQAMLWDLNEGKHLYTLDGGD---IINALCFSPNRYWLC-AATGPSIKIWDLEGK-IIVDELKQEVI-----  298 (340)
T ss_dssp             EEEEEETTCEEEEEETTTTEEEEEEECSS---CEEEEEECSSSSEEE-EEETTEEEEEETTTT-EEEEEECCC-------
T ss_pred             EEEEEeCCCeEEEEEeccCceeeeecCCc---eEEeeecCCCCceee-ccCCCEEEEEECCCC-eEEEeccccce-----
Confidence            79999999999999999999998887653   589999999887655 556899999998766 22222211000     


Q ss_pred             CCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCc
Q 001295          660 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE  739 (1106)
Q Consensus       660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~  739 (1106)
                                                                                                  ....
T Consensus       299 ----------------------------------------------------------------------------~~~~  302 (340)
T 4aow_A          299 ----------------------------------------------------------------------------STSS  302 (340)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ----------------------------------------------------------------------------eeec
Confidence                                                                                        0000


Q ss_pred             cccccceEEEEEcCCCceEEEeecCceEEEeecccc
Q 001295          740 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRT  775 (1106)
Q Consensus       740 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  775 (1106)
                      .+|...|.+++|+|++++|++++.||.|+||++.++
T Consensus       303 ~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG  338 (340)
T 4aow_A          303 KAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG  338 (340)
T ss_dssp             -CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred             cCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence            237789999999999999999999999999998753

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.1e-34  Score=321.53  Aligned_cols=211  Identities=19%  Similarity=0.291  Sum_probs=179.6

Q ss_pred             ccCCCCcCeEEEEEccC-CCEEEEEeCCCeEEEEEccCCcee--eeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcE
Q 001295          407 LVKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQIYSYHGGDEV--RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI  483 (1106)
Q Consensus       407 ~~~~h~~~V~~l~~spd-g~~las~~~d~~v~iwd~~~~~~~--~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i  483 (1106)
                      +|.||.+.|++|+|+|+ +++||||+.|++|+|||+.+++..  .....+.+|...|.+++|+|+++  +|++++.|+.|
T Consensus        33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~--~l~s~~~d~~i  110 (340)
T 4aow_A           33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ--FALSGSWDGTL  110 (340)
T ss_dssp             EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred             EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCC--EEEEEcccccc
Confidence            47899999999999997 689999999999999999876532  23456889999999999999999  89999999999


Q ss_pred             EEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCcee-EeeCCCCeeEEEEEecCCCeEEE
Q 001295          484 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQ  562 (1106)
Q Consensus       484 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~~~~  562 (1106)
                      ++|+...+........+...+..+.+.+.  +.+|++++.|+.+++||+....... ....+...+..++|++++.    
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~----  184 (340)
T 4aow_A          111 RLWDLTTGTTTRRFVGHTKDVLSVAFSSD--NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS----  184 (340)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECTT--SSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSS----
T ss_pred             eEEeecccceeeeecCCCCceeEEEEeec--CccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCC----
Confidence            99999999999888888888988887544  4789999999999999987644332 3345566677777766553    


Q ss_pred             eeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295          563 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       563 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                                     ..++++++.|+.|++||+.+++.+..+..|  ...|.+++|+|++++|++|+.||.|++||+.+.
T Consensus       185 ---------------~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h--~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~  247 (340)
T 4aow_A          185 ---------------NPIIVSCGWDKLVKVWNLANCKLKTNHIGH--TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG  247 (340)
T ss_dssp             ---------------SCEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred             ---------------CcEEEEEcCCCEEEEEECCCCceeeEecCC--CCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC
Confidence                           235788999999999999999999998876  457999999999999999999999999998655

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=100.00  E-value=7.7e-34  Score=364.33  Aligned_cols=493  Identities=13%  Similarity=0.064  Sum_probs=355.7

Q ss_pred             cceeeeccCCCCcEEEEEecCCCeEEEEEecc------CcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcC
Q 001295          341 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNV------GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVS  414 (1106)
Q Consensus       341 ~~~~~~~~h~~~v~~~~~sp~g~~llatg~~d------g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~  414 (1106)
                      .....+..|...|.+++|||||++ ||+++.+      ..|.+||+.+++..                    .+..|...
T Consensus        43 g~~~~lt~~~~~v~~~~~SPDG~~-la~~s~~~~~~~~~~i~~~d~~~g~~~--------------------~lt~~~~~  101 (1045)
T 1k32_A           43 GSTRKIVSNLGVINNARFFPDGRK-IAIRVMRGSSLNTADLYFYNGENGEIK--------------------RITYFSGK  101 (1045)
T ss_dssp             CCEEEEECSSSEEEEEEECTTSSE-EEEEEEESTTCCEEEEEEEETTTTEEE--------------------ECCCCCEE
T ss_pred             CcEEEeeeCCCcccCeEECCCCCE-EEEEEeeccCCCCCeEEEEECCCCCeE--------------------EcccCCCc
Confidence            345556679999999999999997 6655432      47999999887643                    26778888


Q ss_pred             e-------EEEEEccCCCEEEEEeCC------CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecC--
Q 001295          415 V-------NRVIWSPDGSLFGVAYSR------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD--  479 (1106)
Q Consensus       415 V-------~~l~~spdg~~las~~~d------~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~--  479 (1106)
                      +       ..++|||||+++++++.+      ..|.+|++.+++...    +..+  ....++|+| |   ++++++.  
T Consensus       102 ~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~--~~~~~~~sp-G---~l~~~~~~~  171 (1045)
T 1k32_A          102 STGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP----LNLG--PATHILFAD-G---RRVIGRNTF  171 (1045)
T ss_dssp             EETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE----CCSC--SCSEEEEET-T---EEEEEESCS
T ss_pred             ccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEE----ecCC--CcceeeeCC-C---EEEEeccCC
Confidence            8       999999999977777644      458888888876432    3333  345778999 6   4666542  


Q ss_pred             ----------CCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCC-CceeEeeCCCCee
Q 001295          480 ----------DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWC  548 (1106)
Q Consensus       480 ----------d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v  548 (1106)
                                +...++|....+.....+.+|...+.++.|+++   .++++++.|+.+++|.+... .....+..+. .+
T Consensus       172 ~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d---~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~  247 (1045)
T 1k32_A          172 ELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH---RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DY  247 (1045)
T ss_dssp             CCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT---EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SS
T ss_pred             CccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC---EEEEEEeccCceEEEEEeCCCCcceEecCCC-Cc
Confidence                      345677754443556667899999999998643   67788888999999987642 2333333322 23


Q ss_pred             EEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCC---------CCCCcCeEEEc
Q 001295          549 TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG---------GLPASPRIRFN  619 (1106)
Q Consensus       549 ~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---------~~~~v~~v~~s  619 (1106)
                      ...+|+|||+                     +++.+ .++.|++|++... .+..+..+.         +...+.+++|+
T Consensus       248 ~~~~~SpDG~---------------------~la~~-~~~~i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S  304 (1045)
T 1k32_A          248 YPRHLNTDGR---------------------RILFS-KGGSIYIFNPDTE-KIEKIEIGDLESPEDRIISIPSKFAEDFS  304 (1045)
T ss_dssp             CEEEEEESSS---------------------CEEEE-ETTEEEEECTTTC-CEEECCCCCCCBCCSEEEECGGGGEEEEE
T ss_pred             ceeeEcCCCC---------------------EEEEE-eCCEEEEecCCce-EeeeeccCcccccccccccccccceeeec
Confidence            4445555554                     56665 4899999999544 344544321         12258899999


Q ss_pred             -cCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCC
Q 001295          620 -KDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNG  698 (1106)
Q Consensus       620 -~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  698 (1106)
                       |||++|++++ ++.+++|+..++. ... +                                                 
T Consensus       305 ~pdG~~la~~~-~~~i~~~~~~~~~-~~~-~-------------------------------------------------  332 (1045)
T 1k32_A          305 PLDGDLIAFVS-RGQAFIQDVSGTY-VLK-V-------------------------------------------------  332 (1045)
T ss_dssp             ECGGGCEEEEE-TTEEEEECTTSSB-EEE-C-------------------------------------------------
T ss_pred             CCCCCEEEEEE-cCEEEEEcCCCCc-eEE-c-------------------------------------------------
Confidence             9999999888 6889999876541 000 0                                                 


Q ss_pred             CccccCCCCccccccCCCceeeEecCCCCCCccceecccCcccccc-ceEEEEEcCCCceEEEeecCceEE-Eeeccccc
Q 001295          699 DVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT-KISRLIFTNSGNAILALASNAIHL-LWKWQRTE  776 (1106)
Q Consensus       699 ~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~~~~~dg~i~-iw~~~~~~  776 (1106)
                                                               ..+.. .+..++|+ +|+.++.++.++.+. +|++.   
T Consensus       333 -----------------------------------------~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~---  367 (1045)
T 1k32_A          333 -----------------------------------------PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYR---  367 (1045)
T ss_dssp             -----------------------------------------SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETT---
T ss_pred             -----------------------------------------cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECC---
Confidence                                                     01334 67889999 999999888877777 77654   


Q ss_pred             cCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCee
Q 001295          777 RNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAAT  855 (1106)
Q Consensus       777 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~  855 (1106)
                                         ++....  +.  .+...+..++|+|||++|++++ ++.|++||+.+++....+.+|...+.
T Consensus       368 -------------------~~~~~~--l~--~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~  424 (1045)
T 1k32_A          368 -------------------TGKAEK--FE--ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMIT  424 (1045)
T ss_dssp             -------------------TCCEEE--CC--CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCC
T ss_pred             -------------------CCCceE--ec--CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCcc
Confidence                               222222  11  2677899999999999999998 78999999999988887778888999


Q ss_pred             EEEEecCCCceEEEeeCCC----------cEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCC
Q 001295          856 FLAFHPQDNNIIAIGMDDS----------SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG  925 (1106)
Q Consensus       856 ~l~~s~~d~~~la~g~~dg----------~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~  925 (1106)
                      +++||| |+++|++++.++          .|++||+.+++ +..+..|...+.+++|+|||++|++++.++...+|+...
T Consensus       425 ~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~  502 (1045)
T 1k32_A          425 DFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV  502 (1045)
T ss_dssp             CEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred             ceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhc
Confidence            999999 899888887654          99999999888 677888999999999999999999999988888887543


Q ss_pred             cccccc---ee--e--c---------------------ccCC-------CCCCCCCCceEEEcCCCcEEEE---------
Q 001295          926 WEKQKN---RF--L--Q---------------------IPTG-------RTPTAQSDTRVQFHQDQIHFLV---------  961 (1106)
Q Consensus       926 ~~~~~~---~~--~--~---------------------~~~~-------~~~~~~~i~~~~~s~dg~~l~~---------  961 (1106)
                      ......   ..  +  .                     ...+       .......+..++++|||+++++         
T Consensus       503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~  582 (1045)
T 1k32_A          503 LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAA  582 (1045)
T ss_dssp             SCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHH
T ss_pred             cccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccc
Confidence            321000   00  0  0                     0000       0011235678999999997874         


Q ss_pred             ---E--eCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCce
Q 001295          962 ---V--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1020 (1106)
Q Consensus       962 ---~--~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~ 1020 (1106)
                         +  ....+.+||+.+++.....      ..+.+++|||||++|++++.| .|++||+.+++
T Consensus       583 ~~~~~~~~~~l~~~d~~~~~~~~l~------~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~  639 (1045)
T 1k32_A          583 YYQGAPEKGVLLKYDVKTRKVTEVK------NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP  639 (1045)
T ss_dssp             HHHCCCCCEEEEEEETTTCCEEEEE------EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred             cccccCCCceEEEEECCCCcEEEee------cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence               1  2457899999988764332      468899999999999999866 89999998887

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.3e-36  Score=348.02  Aligned_cols=382  Identities=14%  Similarity=0.205  Sum_probs=282.5

Q ss_pred             EEccCCCEEEEEeCCCeEEEEEccCCceeeeeeee-ccccCCeeEEEEcC-CCCceEEEEecCCCcEEEEeCCC---Cc-
Q 001295          419 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEI-DAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATN---GA-  492 (1106)
Q Consensus       419 ~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l-~~h~~~V~~~~~s~-d~~~~~l~s~~~d~~i~iwd~~~---~~-  492 (1106)
                      .|+|+++.+++++      .|+.. ++.+.   .+ .+|.+.|++++|+| +++  +|++|+.|++|+|||+.+   +. 
T Consensus        34 ~f~~~~~~~~~~~------~w~~~-g~~~~---~~~~~h~~~V~~~~~s~~~~~--~l~s~s~dg~v~vwd~~~~~~~~~  101 (437)
T 3gre_A           34 EFGPIQEIVRSPN------MGNLR-GKLIA---TLMENEPNSITSSAVSPGETP--YLITGSDQGVIKIWNLKEIIVGEV  101 (437)
T ss_dssp             GGCCCCCCCCCCC------GGGCC-CCEEE---EECTTTTSCEEEEEEECSSSC--EEEEEETTSEEEEEEHHHHHTTCC
T ss_pred             hcCCccccccccc------ccccc-ceEEe---eeccCCCCceEEEEECCCCCC--EEEEecCCceEEEeECcccccCcc
Confidence            4788888888765      37743 44444   56 88999999999999 998  899999999999999876   43 


Q ss_pred             --eeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCC---CCCceeEeeCCCCeeEEEEEecCCCeEEEeeecc
Q 001295          493 --KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD---NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR  567 (1106)
Q Consensus       493 --~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~---~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~  567 (1106)
                        ....+ +|...|.+++|++  ++.+|++++.||.|++||+.   .+........+  .+..+.+++++       ...
T Consensus       102 ~~~~~~~-~h~~~v~~~~~~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~-------~~~  169 (437)
T 3gre_A          102 YSSSLTY-DCSSTVTQITMIP--NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CIRKINLKNFG-------KNE  169 (437)
T ss_dssp             CSCSEEE-ECSSCEEEEEECT--TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE--EEEEEEGGGGS-------SCC
T ss_pred             cceeeec-cCCCCEEEEEEeC--CCCEEEEEeCCCEEEEEEeccccCCceeeccccc--eeEEEEccCcc-------ccc
Confidence              33444 4999999999975  45799999999999999995   44444444433  67777777743       122


Q ss_pred             ceeEEE--EcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchh
Q 001295          568 SLGVVQ--FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL  645 (1106)
Q Consensus       568 ~i~~~~--~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  645 (1106)
                      .+.++.  +++++.++++++.|+.|++||+.+++.+..+..+.+...|.+++|+|++++|++|+.||.|++||++++ +.
T Consensus       170 ~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-~~  248 (437)
T 3gre_A          170 YAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN-VL  248 (437)
T ss_dssp             CEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT-EE
T ss_pred             CceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc-cE
Confidence            455555  678899999999999999999999999999987434558999999999999999999999999998765 11


Q ss_pred             hhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCC
Q 001295          646 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE  725 (1106)
Q Consensus       646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~  725 (1106)
                      +..+.                                                                        +  
T Consensus       249 ~~~~~------------------------------------------------------------------------~--  254 (437)
T 3gre_A          249 IRSWS------------------------------------------------------------------------F--  254 (437)
T ss_dssp             EEEEB------------------------------------------------------------------------C--
T ss_pred             EEEEe------------------------------------------------------------------------c--
Confidence            11100                                                                        0  


Q ss_pred             CCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccC
Q 001295          726 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT  805 (1106)
Q Consensus       726 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  805 (1106)
                                                                                                      
T Consensus       255 --------------------------------------------------------------------------------  254 (437)
T 3gre_A          255 --------------------------------------------------------------------------------  254 (437)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCeeEEEE----ecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEE
Q 001295          806 DSNPEEAVPCFAL----SKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN  880 (1106)
Q Consensus       806 ~~~~~~~v~~l~~----s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd  880 (1106)
                        .|...|.++++    ++++++|++++ ||.|++||+.+++++..+.+|...+..+.|+| +++.+    .+..     
T Consensus       255 --~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l----~~~~-----  322 (437)
T 3gre_A          255 --GDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLP-IEKGL----EELN-----  322 (437)
T ss_dssp             --TTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSC-BCSSG----GGCC-----
T ss_pred             --CCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecc-ccccc----ccce-----
Confidence              02333445533    35677889988 89999999999999999999999999999999 65554    1111     


Q ss_pred             eecceEEEEecC--cccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcE
Q 001295          881 VRVDEVKSKLKG--HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH  958 (1106)
Q Consensus       881 ~~~~~~~~~l~~--h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~  958 (1106)
                               +.+  |...|++++|+ ++++|++++.|+.|++||+.+++...     ...++...........++++..+
T Consensus       323 ---------~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  387 (437)
T 3gre_A          323 ---------FCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSK-----AVISPSRFSDVFIPTQVTANLTM  387 (437)
T ss_dssp             ---------CCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCE-----EEECC--CCCEEEEEEEETTEEE
T ss_pred             ---------ecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccce-----EEecccccCceEEEEEeecceEE
Confidence                     445  99999999999 88999999999999999999876432     22333322234555666666665


Q ss_pred             EEEEeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCC--CCEEEEEEcCCeEEEEE
Q 001295          959 FLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCD--SQLVYACFLDATVCVFS 1015 (1106)
Q Consensus       959 l~~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d--~~~l~t~s~Dg~i~vwd 1015 (1106)
                      ++..       |+..........  ..|...|++++|+++  +.+|++|+.||+|+||+
T Consensus       388 ~~~~-------~~~~~~~~~~~~--~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          388 LLRK-------MKRTSTHSVDDS--LYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             EEEE-------CC---------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             EEEe-------cccccccccCcc--cccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence            5543       233333333333  368999999999998  78999999999999995

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=6.8e-34  Score=330.01  Aligned_cols=319  Identities=16%  Similarity=0.287  Sum_probs=265.5

Q ss_pred             eccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCC
Q 001295          346 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  425 (1106)
Q Consensus       346 ~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~  425 (1106)
                      ..+|.+.|.. +++++|+ ++++|+.||+|+|||+.+++.+..                   +.+|.+.|.+++|+  ++
T Consensus       114 l~~h~~~v~~-~~~~~g~-~l~sg~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~--~~  170 (445)
T 2ovr_B          114 LKGHDDHVIT-CLQFCGN-RIVSGSDDNTLKVWSAVTGKCLRT-------------------LVGHTGGVWSSQMR--DN  170 (445)
T ss_dssp             EECSTTSCEE-EEEEETT-EEEEEETTSCEEEEETTTCCEEEE-------------------CCCCSSCEEEEEEE--TT
T ss_pred             ecccCCCcEE-EEEEcCC-EEEEEECCCcEEEEECCCCcEEEE-------------------EcCCCCCEEEEEec--CC
Confidence            4458887643 3556788 499999999999999999987763                   68999999999997  67


Q ss_pred             EEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeE
Q 001295          426 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY  505 (1106)
Q Consensus       426 ~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~  505 (1106)
                      +|++|+.||+|++||+.+++.+.   .+.+|...|.+++|+  ++  .+++|+.|++|++||+.+++.+..+.+|...|.
T Consensus       171 ~l~s~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~  243 (445)
T 2ovr_B          171 IIISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLH--EK--RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR  243 (445)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEESSSCCEEEEEECCSSCEE
T ss_pred             EEEEEeCCCeEEEEECCcCcEEE---EECCCCCcEEEEEec--CC--EEEEEeCCCEEEEEECCCCcEEEEEcCCcccEE
Confidence            99999999999999999987665   678999999999995  44  799999999999999999999999999999999


Q ss_pred             EEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEE
Q 001295          506 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG  585 (1106)
Q Consensus       506 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  585 (1106)
                      ++++    ++.++++|+.||.|++||+++......+..+...+.++.+  ++                     .++++++
T Consensus       244 ~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~---------------------~~l~~~~  296 (445)
T 2ovr_B          244 CVQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DG---------------------IHVVSGS  296 (445)
T ss_dssp             EEEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CS---------------------SEEEEEE
T ss_pred             EEEE----CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CC---------------------CEEEEEe
Confidence            9997    3468999999999999999988877777777777777766  33                     4799999


Q ss_pred             CCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCC
Q 001295          586 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKP  665 (1106)
Q Consensus       586 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  665 (1106)
                      .|+.|++||+.+++.+..+..+.  ..+.++.+  +++++++|+.||.|++||+.++ +.+..+..              
T Consensus       297 ~d~~i~i~d~~~~~~~~~~~~~~--~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~--------------  357 (445)
T 2ovr_B          297 LDTSIRVWDVETGNCIHTLTGHQ--SLTSGMEL--KDNILVSGNADSTVKIWDIKTG-QCLQTLQG--------------  357 (445)
T ss_dssp             TTSCEEEEETTTCCEEEEECCCC--SCEEEEEE--ETTEEEEEETTSCEEEEETTTC-CEEEEECS--------------
T ss_pred             CCCeEEEEECCCCCEEEEEcCCc--ccEEEEEE--eCCEEEEEeCCCeEEEEECCCC-cEEEEEcc--------------
Confidence            99999999999999999987663  35655555  6789999999999999998665 11111000              


Q ss_pred             CcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccc
Q 001295          666 TISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK  745 (1106)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~  745 (1106)
                                                                                                      
T Consensus       358 --------------------------------------------------------------------------------  357 (445)
T 2ovr_B          358 --------------------------------------------------------------------------------  357 (445)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEE
Q 001295          746 ISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYV  825 (1106)
Q Consensus       746 i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l  825 (1106)
                                                                                .  ..|...|.+++++  +++|
T Consensus       358 ----------------------------------------------------------~--~~~~~~v~~~~~~--~~~l  375 (445)
T 2ovr_B          358 ----------------------------------------------------------P--NKHQSAVTCLQFN--KNFV  375 (445)
T ss_dssp             ----------------------------------------------------------T--TSCSSCEEEEEEC--SSEE
T ss_pred             ----------------------------------------------------------C--CCCCCCEEEEEEC--CCEE
Confidence                                                                      0  0156677888874  5788


Q ss_pred             EEEe-CCeEEEEEcCCCceeeee-----cCCCCCeeEEEEecCCCceEEEeeCCCc----EEEEEeec
Q 001295          826 MSAS-GGKISLFNMMTFKTMATF-----MPPPPAATFLAFHPQDNNIIAIGMDDSS----IQIYNVRV  883 (1106)
Q Consensus       826 ~~~s-dg~i~vwd~~~~~~~~~~-----~~~~~~v~~l~~s~~d~~~la~g~~dg~----v~iwd~~~  883 (1106)
                      ++++ ||.|++||+.+++.+..+     .+|.+.|.+++|+| ++.++|+|+.||+    |.|||+..
T Consensus       376 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~la~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          376 ITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS-SEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             EEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecC-CEEEEEEcccCCCCccEEEEEECCC
Confidence            8888 899999999998888877     46788899999999 8999999999998    99999864

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.5e-33  Score=329.38  Aligned_cols=319  Identities=15%  Similarity=0.244  Sum_probs=264.3

Q ss_pred             eeccCCCCc-EEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccC
Q 001295          345 RTLNQGSSP-MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  423 (1106)
Q Consensus       345 ~~~~h~~~v-~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd  423 (1106)
                      ...+|.+.| .++.|  +++ ++++|+.||+|++||+.+++.+..                   +.+|.+.|.+++|+|+
T Consensus       116 ~l~~h~~~v~~~~~~--~~~-~l~sgs~dg~i~vwd~~~~~~~~~-------------------~~~h~~~V~~l~~~~~  173 (464)
T 3v7d_B          116 TLRGHMTSVITCLQF--EDN-YVITGADDKMIRVYDSINKKFLLQ-------------------LSGHDGGVWALKYAHG  173 (464)
T ss_dssp             EEECCSSSCEEEEEE--ETT-EEEEEETTSCEEEEETTTTEEEEE-------------------ECCCSSCEEEEEECST
T ss_pred             EEcCCCCCcEEEEEE--CCC-EEEEEcCCCcEEEEECCCCcEEEE-------------------EeCCCcCEEEEEEcCC
Confidence            344588775 66555  566 599999999999999999987763                   6899999999999998


Q ss_pred             CCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcC--CCCceEEEEecCCCcEEEEeCCCCce--------
Q 001295          424 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH--PNKQLCVITCGDDKTIKVWDATNGAK--------  493 (1106)
Q Consensus       424 g~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~--d~~~~~l~s~~~d~~i~iwd~~~~~~--------  493 (1106)
                      + +|++|+.||+|++||+.+++.+.   .+.+|...|.+++|++  ++.  ++++|+.|++|++||+.++..        
T Consensus       174 ~-~l~s~s~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~--~l~s~s~d~~i~vwd~~~~~~~~~~~~~~  247 (464)
T 3v7d_B          174 G-ILVSGSTDRTVRVWDIKKGCCTH---VFEGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPDHGEEH  247 (464)
T ss_dssp             T-EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEEESSSCE--EEEEEETTSCEEEEECCCCCCC------C
T ss_pred             C-EEEEEeCCCCEEEEECCCCcEEE---EECCCCCccEEEEEecCCCCC--EEEEEcCCCcEEEeeCCCCcccccccccC
Confidence            8 99999999999999999987665   6789999999999994  556  899999999999999987653        


Q ss_pred             ---------------eEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCC
Q 001295          494 ---------------QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT  558 (1106)
Q Consensus       494 ---------------~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~  558 (1106)
                                     +..+.+|...|.++.  +  ++.++++++.||.|++||+++.+....+..|...|.+++|+++++
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  323 (464)
T 3v7d_B          248 DYPLVFHTPEENPYFVGVLRGHMASVRTVS--G--HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK  323 (464)
T ss_dssp             CSSEEESCGGGCTTEEEEECCCSSCEEEEE--E--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTT
T ss_pred             CcceEeeccCCCeEEEEEccCccceEEEEc--C--CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCC
Confidence                           557788999999885  2  346899999999999999998888777777777777777766665


Q ss_pred             eEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEE
Q 001295          559 RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA  638 (1106)
Q Consensus       559 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd  638 (1106)
                                           ++++++.||.|++||+.+++.+..+..|  ...|.+++|+  +.+|++++.||.|++||
T Consensus       324 ---------------------~l~sg~~dg~i~vwd~~~~~~~~~~~~h--~~~v~~~~~~--~~~l~s~s~dg~v~vwd  378 (464)
T 3v7d_B          324 ---------------------RCISASMDTTIRIWDLENGELMYTLQGH--TALVGLLRLS--DKFLVSAAADGSIRGWD  378 (464)
T ss_dssp             ---------------------EEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEEC--SSEEEEEETTSEEEEEE
T ss_pred             ---------------------EEEEEeCCCcEEEEECCCCcEEEEEeCC--CCcEEEEEEc--CCEEEEEeCCCcEEEEE
Confidence                                 7999999999999999999999999876  4478899987  58999999999999999


Q ss_pred             ccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCce
Q 001295          639 TSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKS  718 (1106)
Q Consensus       639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i  718 (1106)
                      +.++...                                                                         
T Consensus       379 ~~~~~~~-------------------------------------------------------------------------  385 (464)
T 3v7d_B          379 ANDYSRK-------------------------------------------------------------------------  385 (464)
T ss_dssp             TTTCCEE-------------------------------------------------------------------------
T ss_pred             CCCCcee-------------------------------------------------------------------------
Confidence            8654100                                                                         


Q ss_pred             eeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCC
Q 001295          719 KVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI  798 (1106)
Q Consensus       719 ~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~  798 (1106)
                                                              ...                                     
T Consensus       386 ----------------------------------------~~~-------------------------------------  388 (464)
T 3v7d_B          386 ----------------------------------------FSY-------------------------------------  388 (464)
T ss_dssp             ----------------------------------------EEE-------------------------------------
T ss_pred             ----------------------------------------eee-------------------------------------
Confidence                                                    000                                     


Q ss_pred             ccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeee-ecCCCCCeeEEEEecCCCceEEEeeCCCcEE
Q 001295          799 MMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQ  877 (1106)
Q Consensus       799 ~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~-~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~  877 (1106)
                               .+...+..++++++++++++++||.|++||+.+++.+.. +..|...|.+++|+  ++.++++++.||.+.
T Consensus       389 ---------~~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~--~~~l~~~~~~~g~~~  457 (464)
T 3v7d_B          389 ---------HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFK--GKTLVAAVEKDGQSF  457 (464)
T ss_dssp             ---------ECTTCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEESCTTTTCSEEEEEEEE--TTEEEEEEEETTEEE
T ss_pred             ---------cCCCCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEehhhccCCCcEEEEEec--CCEEEEEEEeCCeEE
Confidence                     034445678899999999999999999999999999876 67788999999997  467777788888776


Q ss_pred             EEEe
Q 001295          878 IYNV  881 (1106)
Q Consensus       878 iwd~  881 (1106)
                      +|-+
T Consensus       458 i~~l  461 (464)
T 3v7d_B          458 LEIL  461 (464)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            6543

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.8e-36  Score=345.93  Aligned_cols=354  Identities=12%  Similarity=0.078  Sum_probs=240.3

Q ss_pred             CCeeEEEEEecCC---------CeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCccee----EEEccCCCCC
Q 001295          545 GRWCTTMAYSADG---------TRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL----TSIDADGGLP  611 (1106)
Q Consensus       545 ~~~v~~~~~s~~~---------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~----~~~~~~~~~~  611 (1106)
                      ...|.+++|+|++         +.+..+......  ...+|+++.+++++.|++|+|||+.+++..    ..+..+  ..
T Consensus       133 ~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~--~~  208 (524)
T 2j04_B          133 GGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--EPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHS--FG  208 (524)
T ss_dssp             CC--CCCSCEEECCCCSSCSSEEEEEEEEEC--------------------CEEEEEEEEETTTCCEEEEEEEEEC--CC
T ss_pred             CCceeEEEecccCCCCccCcCCeEEEEEEecccC--CccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEec--CC
Confidence            4567788888876         455554433211  124788889999999999999999887643    234443  34


Q ss_pred             CcCeEEEccC------CCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhccccccc
Q 001295          612 ASPRIRFNKD------GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLAD  685 (1106)
Q Consensus       612 ~v~~v~~s~~------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  685 (1106)
                      .|.+++|+|+      +.+||+++.||+|++||+.++.......    .                               
T Consensus       209 ~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~----~-------------------------------  253 (524)
T 2j04_B          209 EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF----K-------------------------------  253 (524)
T ss_dssp             SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE----E-------------------------------
T ss_pred             cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc----e-------------------------------
Confidence            6999999996      5799999999999999997652100000    0                               


Q ss_pred             ccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCc
Q 001295          686 RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNA  765 (1106)
Q Consensus       686 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  765 (1106)
                                                          .+.     .....+    .+|...|.+++|++++ .|++++.||
T Consensus       254 ------------------------------------~~~-----~p~~~l----~~h~~~v~sv~~s~~~-~lasgs~Dg  287 (524)
T 2j04_B          254 ------------------------------------MCE-----KPSLTL----SLADSLITTFDFLSPT-TVVCGFKNG  287 (524)
T ss_dssp             ------------------------------------CCC-----SCSEEE----CCTTTCEEEEEESSSS-EEEEEETTS
T ss_pred             ------------------------------------eec-----CceEEE----EcCCCCEEEEEecCCC-eEEEEeCCC
Confidence                                                000     000000    2377889999999875 799999999


Q ss_pred             eEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEE--EEecCC-CEEEEEe-CCeEEEEEcCCC
Q 001295          766 IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF--ALSKND-SYVMSAS-GGKISLFNMMTF  841 (1106)
Q Consensus       766 ~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l--~~s~~~-~~l~~~s-dg~i~vwd~~~~  841 (1106)
                      +|++||+...                      ......+.+  |...|.++  +|++++ ++|++++ |++|+|||++++
T Consensus       288 tV~lWD~~~~----------------------~~~~~~~~~--H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~  343 (524)
T 2j04_B          288 FVAEFDLTDP----------------------EVPSFYDQV--HDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDI  343 (524)
T ss_dssp             EEEEEETTBC----------------------SSCSEEEEC--SSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGH
T ss_pred             EEEEEECCCC----------------------CCceEEeec--ccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCC
Confidence            9999998632                      111111222  89999999  578888 8999999 999999999998


Q ss_pred             ceeeeecCCCC--CeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEE
Q 001295          842 KTMATFMPPPP--AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLC  919 (1106)
Q Consensus       842 ~~~~~~~~~~~--~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~  919 (1106)
                      ++...+.+|..  .|.+++|+| +++.+++++.|++|++||+.++.++..+.+|.+.|++|+|+|+|++|+||+.||+|+
T Consensus       344 ~~~~~~~~~~~~~~v~~v~fsp-~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~  422 (524)
T 2j04_B          344 ATTKTTVSRFRGSNLVPVVYCP-QIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLI  422 (524)
T ss_dssp             HHHCEEEEECSCCSCCCEEEET-TTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEE
T ss_pred             CcccccccccccCcccceEeCC-CcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEE
Confidence            88777766653  588999999 888999999999999999999998888999999999999999999999999999999


Q ss_pred             EEeCCCcccccceeecccCCCC--CCCCCCceEEEcCCCcEEEEEeCCeEEEEecC-CceEeeecccCCCCCCeeEEEEC
Q 001295          920 VWSSDGWEKQKNRFLQIPTGRT--PTAQSDTRVQFHQDQIHFLVVHETQLAIFETT-KLECVKQWVPRESSAPITHATFS  996 (1106)
Q Consensus       920 vwd~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~-~~~~~~~~~~~~h~~~v~~l~~s  996 (1106)
                      +||+...      .+.......  .....+..++|+|+|..+....  .+.+|+.. ++.++..+.  +|...|.+++|+
T Consensus       423 lwd~~~~------~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~--~~~~~~~~~~g~~~~~l~--gh~~~V~~Vafs  492 (524)
T 2j04_B          423 ITNAARR------LLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDS--SYEVYPLTVNDVSKAKID--AHGINITCTKWN  492 (524)
T ss_dssp             CCBSCSS------TTTCC------CCCCEEEECBCCSSSCEEEECC--CCCCCC---------------CCCSCCCEEEC
T ss_pred             EEechHh------hccccccCccceeeeEEEEeccCCCCCeEEccC--CceecccccCCcceeeec--CCCceEEEEECC
Confidence            9998652      111111100  0011356889999998554322  23344432 455555554  889999999999


Q ss_pred             CCCC---EEEEEEcCCeEEEEEcCC
Q 001295          997 CDSQ---LVYACFLDATVCVFSAAN 1018 (1106)
Q Consensus       997 ~d~~---~l~t~s~Dg~i~vwd~~~ 1018 (1106)
                      |++.   +||+|+.||+|+||++.-
T Consensus       493 p~~~~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          493 ETSAGGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             CSTTTTTEEEEECTTSEEEEEECSC
T ss_pred             CCCCccHHHHhhccCceEEEEEccc
Confidence            9964   999999999999999763

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.9e-34  Score=321.43  Aligned_cols=302  Identities=16%  Similarity=0.245  Sum_probs=253.3

Q ss_pred             ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEE
Q 001295          407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  486 (1106)
Q Consensus       407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw  486 (1106)
                      .+.+|.+.|++++|+|+|++|++++.||.|++||+.+++.+.   .+.+|...|.+++|+|+++  +|++++.|+.|++|
T Consensus        27 ~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~iw  101 (369)
T 3zwl_B           27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG---TLDGHTGTIWSIDVDCFTK--YCVTGSADYSIKLW  101 (369)
T ss_dssp             EEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTTEEEEE
T ss_pred             EEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh---hhhhcCCcEEEEEEcCCCC--EEEEEeCCCeEEEE
Confidence            478999999999999999999999999999999999987665   6889999999999999999  89999999999999


Q ss_pred             eCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecC-----CeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEE
Q 001295          487 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD-----GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY  561 (1106)
Q Consensus       487 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~  561 (1106)
                      |+.+++.+..+. |...|.+++|+++  +.++++++.+     +.|++||+........+                    
T Consensus       102 d~~~~~~~~~~~-~~~~v~~~~~~~~--~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~--------------------  158 (369)
T 3zwl_B          102 DVSNGQCVATWK-SPVPVKRVEFSPC--GNYFLAILDNVMKNPGSINIYEIERDSATHEL--------------------  158 (369)
T ss_dssp             ETTTCCEEEEEE-CSSCEEEEEECTT--SSEEEEEECCBTTBCCEEEEEEEEECTTTCCE--------------------
T ss_pred             ECCCCcEEEEee-cCCCeEEEEEccC--CCEEEEecCCccCCCCEEEEEEecCCccceee--------------------
Confidence            999999999988 8899999998654  5789999988     99999988654322111                    


Q ss_pred             EeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccC
Q 001295          562 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD  641 (1106)
Q Consensus       562 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~  641 (1106)
                                          ..            .....+..+..+.....+.+++|+|++++|++++.||.|++||+.+
T Consensus       159 --------------------~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  206 (369)
T 3zwl_B          159 --------------------TK------------VSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSN  206 (369)
T ss_dssp             --------------------EE------------ECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTT
T ss_pred             --------------------cc------------cccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCC
Confidence                                00            0112223333333334789999999999999999999999999865


Q ss_pred             CchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeE
Q 001295          642 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW  721 (1106)
Q Consensus       642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw  721 (1106)
                      +......                                                                         
T Consensus       207 ~~~~~~~-------------------------------------------------------------------------  213 (369)
T 3zwl_B          207 NYEYVDS-------------------------------------------------------------------------  213 (369)
T ss_dssp             TTEEEEE-------------------------------------------------------------------------
T ss_pred             CcEeEEE-------------------------------------------------------------------------
Confidence            3110000                                                                         


Q ss_pred             ecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccc
Q 001295          722 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT  801 (1106)
Q Consensus       722 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~  801 (1106)
                                                                                                      
T Consensus       214 --------------------------------------------------------------------------------  213 (369)
T 3zwl_B          214 --------------------------------------------------------------------------------  213 (369)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCC------
Q 001295          802 NDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS------  874 (1106)
Q Consensus       802 ~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg------  874 (1106)
                        +.  .|...|.+++|+|++++|++++ ||.|++||+.+++.+..+. +...+.+++|+| +++++++++.++      
T Consensus       214 --~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~  287 (369)
T 3zwl_B          214 --ID--LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITP-LKEFIILGGGQEAKDVTT  287 (369)
T ss_dssp             --EE--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECS-SSSEEEEEECCC------
T ss_pred             --Ee--cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecC-CCceEEEeecCCCceEEE
Confidence              00  1566788899999999999888 8999999999988888887 777899999999 899999999888      


Q ss_pred             --------cEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcc
Q 001295          875 --------SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE  927 (1106)
Q Consensus       875 --------~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~  927 (1106)
                              .+++||..+++.+..+.+|...|++++|+|++++|++++.||.|++|+++++.
T Consensus       288 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  348 (369)
T 3zwl_B          288 TSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY  348 (369)
T ss_dssp             -------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred             EecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence                    89999999999999999999999999999999999999999999999998754

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=3.6e-34  Score=351.73  Aligned_cols=252  Identities=21%  Similarity=0.297  Sum_probs=212.5

Q ss_pred             ccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCE
Q 001295          347 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  426 (1106)
Q Consensus       347 ~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~  426 (1106)
                      .+|.+.|++++|+|++..+|+||+.||+|+|||+.+.......              ....+.+|...|.+++|+|+|++
T Consensus       379 ~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~--------------~~~~~~~h~~~v~~v~~s~~g~~  444 (694)
T 3dm0_A          379 RAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGV--------------AQRRLTGHSHFVEDVVLSSDGQF  444 (694)
T ss_dssp             ECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCE--------------EEEEEECCSSCEEEEEECTTSSE
T ss_pred             ccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccccc--------------ccceecCCCCcEEEEEECCCCCE
Confidence            3599999999999987657999999999999999765322100              01136899999999999999999


Q ss_pred             EEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEE---eccCCC
Q 001295          427 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF---EGHEAP  503 (1106)
Q Consensus       427 las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~~h~~~  503 (1106)
                      |++|+.|++|+|||+.+++.+.   .+.+|...|.+++|+|+++  +|++|+.|++|++||+.........   .+|...
T Consensus       445 l~sgs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~  519 (694)
T 3dm0_A          445 ALSGSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTISEGGEGHRDW  519 (694)
T ss_dssp             EEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSTTSCSSC
T ss_pred             EEEEeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCcceeeccCCCCCCCc
Confidence            9999999999999999987665   6789999999999999999  7999999999999997655433322   468899


Q ss_pred             eEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEE
Q 001295          504 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA  583 (1106)
Q Consensus       504 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  583 (1106)
                      |.+++|+++.....+++++.|++|++||+++......+..|...|.+++|+|+++                     +|++
T Consensus       520 v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~---------------------~l~s  578 (694)
T 3dm0_A          520 VSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGS---------------------LCAS  578 (694)
T ss_dssp             EEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS---------------------EEEE
T ss_pred             EEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCC---------------------EEEE
Confidence            9999998876557899999999999999998877777777777777777766665                     7999


Q ss_pred             EECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295          584 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       584 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                      ++.|+.|++||+.+++.+..+..+   ..+.+++|+|++.++++++. +.|++||+.++
T Consensus       579 g~~Dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~sp~~~~l~~~~~-~~i~iwd~~~~  633 (694)
T 3dm0_A          579 GGKDGVVLLWDLAEGKKLYSLEAN---SVIHALCFSPNRYWLCAATE-HGIKIWDLESK  633 (694)
T ss_dssp             EETTSBCEEEETTTTEEEECCBCS---SCEEEEEECSSSSEEEEEET-TEEEEEETTTT
T ss_pred             EeCCCeEEEEECCCCceEEEecCC---CcEEEEEEcCCCcEEEEEcC-CCEEEEECCCC
Confidence            999999999999999988777543   35899999999998888765 56999999887

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=6.5e-35  Score=329.50  Aligned_cols=318  Identities=14%  Similarity=0.195  Sum_probs=223.5

Q ss_pred             ccCCCCcCeEEEEEccC----CCEEEEEeCCCeEEEEEccCCceeeeeeeec--cccCCeeEEEEcCC----CCceEEEE
Q 001295          407 LVKDPGVSVNRVIWSPD----GSLFGVAYSRHIVQIYSYHGGDEVRQHLEID--AHVGGVNDIAFSHP----NKQLCVIT  476 (1106)
Q Consensus       407 ~~~~h~~~V~~l~~spd----g~~las~~~d~~v~iwd~~~~~~~~~~~~l~--~h~~~V~~~~~s~d----~~~~~l~s  476 (1106)
                      +..+|.+.|.+++|+|+    ...+++++.++.|++||+.+++.+..+..+.  .|...|.+++|+|+    +.  +|++
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~l~~   90 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP--LLAV   90 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE--EEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC--EEEE
Confidence            45799999999999984    4556666667799999999887766444333  26788999999999    55  8999


Q ss_pred             ecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEe---eCCCCeeEEEEE
Q 001295          477 CGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY---EAPGRWCTTMAY  553 (1106)
Q Consensus       477 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~  553 (1106)
                      |+.|+.|++||+.+++.+..+.+|...|.+++|++. ++.+|++++.||.|++||+++.+....+   ..+...      
T Consensus        91 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~------  163 (366)
T 3k26_A           91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE------  163 (366)
T ss_dssp             EETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSC------
T ss_pred             ecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCc------
Confidence            999999999999999999999999999999999762 4479999999999999999875544333   222222      


Q ss_pred             ecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCc
Q 001295          554 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG  633 (1106)
Q Consensus       554 s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~  633 (1106)
                                                                                 |.+++|+|++++|++++.||.
T Consensus       164 -----------------------------------------------------------v~~~~~~~~~~~l~~~~~dg~  184 (366)
T 3k26_A          164 -----------------------------------------------------------VLSADYDLLGEKIMSCGMDHS  184 (366)
T ss_dssp             -----------------------------------------------------------EEEEEECTTSSEEEEEETTSC
T ss_pred             -----------------------------------------------------------eeEEEECCCCCEEEEecCCCC
Confidence                                                                       444555555555666666666


Q ss_pred             EEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCcccccc
Q 001295          634 IKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEE  713 (1106)
Q Consensus       634 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  713 (1106)
                      |++||+.++ +....+..+.            .+.+.+                                   ..+....
T Consensus       185 i~i~d~~~~-~~~~~~~~~~------------~~~~~~-----------------------------------~~~~~~~  216 (366)
T 3k26_A          185 LKLWRINSK-RMMNAIKESY------------DYNPNK-----------------------------------TNRPFIS  216 (366)
T ss_dssp             EEEEESCSH-HHHHHHHHHH------------TCCGGG-----------------------------------CSSCCCC
T ss_pred             EEEEECCCC-ccccccceeE------------EecCCC-----------------------------------Ccccccc
Confidence            666665554 2222222100            001000                                   0000000


Q ss_pred             CCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccC
Q 001295          714 SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQ  793 (1106)
Q Consensus       714 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~  793 (1106)
                      .......+..                                                                      
T Consensus       217 ~~~~~~~~~~----------------------------------------------------------------------  226 (366)
T 3k26_A          217 QKIHFPDFST----------------------------------------------------------------------  226 (366)
T ss_dssp             EEECCCSEEE----------------------------------------------------------------------
T ss_pred             eeeccCcccc----------------------------------------------------------------------
Confidence            0000000000                                                                      


Q ss_pred             CCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCce--------------eeeecCCCCCeeEEE
Q 001295          794 PPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT--------------MATFMPPPPAATFLA  858 (1106)
Q Consensus       794 ~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~--------------~~~~~~~~~~v~~l~  858 (1106)
                                .  ..|...|.+++|+  ++++++++ ||.|++||+.++..              +..+..|...|++++
T Consensus       227 ----------~--~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  292 (366)
T 3k26_A          227 ----------R--DIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMR  292 (366)
T ss_dssp             ----------C--SSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCC
T ss_pred             ----------c--cCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEE
Confidence                      0  0155556666665  45666665 56666666655433              566778889999999


Q ss_pred             EecCC--CceEEEeeCCCcEEEEEeecce----EEEEecCc--ccCeeEEEEecCCCEEEEEcCCCcEEEEeCCC
Q 001295          859 FHPQD--NNIIAIGMDDSSIQIYNVRVDE----VKSKLKGH--SKRITGLAFSHALNVLVSSGADSQLCVWSSDG  925 (1106)
Q Consensus       859 ~s~~d--~~~la~g~~dg~v~iwd~~~~~----~~~~l~~h--~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~  925 (1106)
                      |+| +  +++|++|+.||.|++||+.+++    ....+.+|  ...|++++|+|++++|++++.||.|++||+.+
T Consensus       293 ~s~-~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          293 FSM-DFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             CEE-CTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             EcC-CCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence            999 7  9999999999999999999875    44578887  79999999999999999999999999999853

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.5e-33  Score=323.68  Aligned_cols=356  Identities=14%  Similarity=0.159  Sum_probs=248.5

Q ss_pred             cCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc-CCCEEEEEeCCCeEEEEEccCCceeeee
Q 001295          372 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQH  450 (1106)
Q Consensus       372 dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~las~~~d~~v~iwd~~~~~~~~~~  450 (1106)
                      ++.++||++..++...                   ++.+|.+.|.+++|+| ++++||+|+.||.|++||+.+++.....
T Consensus        22 ~~~~~v~~~~~~~~~~-------------------~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~   82 (408)
T 4a11_B           22 ESTRRVLGLELNKDRD-------------------VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYY   82 (408)
T ss_dssp             HHHHHHHTEEECTTEE-------------------ECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCE
T ss_pred             cCcceeeccccCccee-------------------eeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceE
Confidence            4567778777665544                   3688999999999999 9999999999999999999988765432


Q ss_pred             ee----------eccccCCeeEEEEcC-CCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccC-CceEE
Q 001295          451 LE----------IDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE-NIQFI  518 (1106)
Q Consensus       451 ~~----------l~~h~~~V~~~~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~l  518 (1106)
                      ..          ..+|...|.+++|+| ++.  +|++++.|+.|++||+.+++.+..+. +...+.++.+.+.. ++.++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  159 (408)
T 4a11_B           83 TCKAVCSIGRDHPDVHRYSVETVQWYPHDTG--MFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLV  159 (408)
T ss_dssp             EECEEEEECTTCTTCCSSCEEEEEECTTCTT--CEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEE
T ss_pred             eccccccccccccccCCCcEEEEEEccCCCc--EEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEE
Confidence            11          135999999999999 555  79999999999999999999988887 77889999887643 45699


Q ss_pred             EEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCc
Q 001295          519 FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV  598 (1106)
Q Consensus       519 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  598 (1106)
                      ++++.||.|++||+++......+..+...|.+++|+|++.                    ..+++++.||.|++||++++
T Consensus       160 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~--------------------~ll~~~~~dg~i~i~d~~~~  219 (408)
T 4a11_B          160 AVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYD--------------------YILATASADSRVKLWDVRRA  219 (408)
T ss_dssp             EEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCT--------------------TEEEEEETTSCEEEEETTCS
T ss_pred             EEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCC--------------------cEEEEEcCCCcEEEEECCCC
Confidence            9999999999999999888888888887777777777665                    14889999999999999876


Q ss_pred             c-eeEEEcc-------------CCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCC
Q 001295          599 Q-LLTSIDA-------------DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK  664 (1106)
Q Consensus       599 ~-~~~~~~~-------------~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  664 (1106)
                      . .+..+..             ..+...|.+++|+|++++|++++.||.|++||+.++.. ......+...         
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~---------  289 (408)
T 4a11_B          220 SGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGEN-TLVNYGKVCN---------  289 (408)
T ss_dssp             SCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCB-CCCCCCCCCC---------
T ss_pred             CcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCcc-ceeccccccc---------
Confidence            5 4444421             23345799999999999999999999999999987621 1110000000         


Q ss_pred             CCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCcccccc
Q 001295          665 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT  744 (1106)
Q Consensus       665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~  744 (1106)
                                                                                                     .
T Consensus       290 -------------------------------------------------------------------------------~  290 (408)
T 4a11_B          290 -------------------------------------------------------------------------------N  290 (408)
T ss_dssp             -------------------------------------------------------------------------------C
T ss_pred             -------------------------------------------------------------------------------c
Confidence                                                                                           0


Q ss_pred             ceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCE
Q 001295          745 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY  824 (1106)
Q Consensus       745 ~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~  824 (1106)
                                                                                     ..............+.+
T Consensus       291 ---------------------------------------------------------------~~~~~~~~~~~~~~~~~  307 (408)
T 4a11_B          291 ---------------------------------------------------------------SKKGLKFTVSCGCSSEF  307 (408)
T ss_dssp             ---------------------------------------------------------------CSSCCCCEECCSSSSCE
T ss_pred             ---------------------------------------------------------------ccccceeEEecCCCceE
Confidence                                                                           00000111112223445


Q ss_pred             EEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEec
Q 001295          825 VMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH  904 (1106)
Q Consensus       825 l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~  904 (1106)
                      ++++.++.|++||+.+++.+..+.+|...|++++|+| ++++|++|+.||.|++||+.+++.+.....+...   ..+.+
T Consensus       308 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~  383 (408)
T 4a11_B          308 VFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS-NFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLNP  383 (408)
T ss_dssp             EEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEEECC---------------------
T ss_pred             EEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcC-CCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---ccccc
Confidence            5555589999999999999999999999999999999 8999999999999999999998877665543322   22333


Q ss_pred             -CCCEEEEEcCCCcEEEEeCCC
Q 001295          905 -ALNVLVSSGADSQLCVWSSDG  925 (1106)
Q Consensus       905 -d~~~l~s~s~Dg~i~vwd~~~  925 (1106)
                       +...+.+.+.|+.+++|+...
T Consensus       384 ~~~~~~~~~~~~~~~~~W~~~~  405 (408)
T 4a11_B          384 AFEDAWSSSDEEGGTSAWSHPQ  405 (408)
T ss_dssp             ----------------------
T ss_pred             ccceeecccCccCceeecCCcc
Confidence             334566778899999998754

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=5.2e-34  Score=329.23  Aligned_cols=240  Identities=15%  Similarity=0.229  Sum_probs=187.3

Q ss_pred             ccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc-CCC
Q 001295          347 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGS  425 (1106)
Q Consensus       347 ~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~  425 (1106)
                      ..|...|+||+|+|.+..+||+|+.||+|+|||+.+++.....                 .+.+|.+.|++|+|+| +++
T Consensus       116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~-----------------~~~gH~~~V~~l~f~p~~~~  178 (435)
T 4e54_B          116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFI-----------------KGIGAGGSITGLKFNPLNTN  178 (435)
T ss_dssp             EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEE-----------------CCCSSSCCCCEEEECSSCTT
T ss_pred             CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEE-----------------EccCCCCCEEEEEEeCCCCC
Confidence            3488999999999965557999999999999999887654321                 2578999999999998 789


Q ss_pred             EEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeE
Q 001295          426 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY  505 (1106)
Q Consensus       426 ~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~  505 (1106)
                      +|++|+.||+|+|||++++.. ........+...+.+++|+|+++  +|++|+.||.|++||++ ++.+..+.+|...|.
T Consensus       179 ~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~  254 (435)
T 4e54_B          179 QFYASSMEGTTRLQDFKGNIL-RVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMD-GKELWNLRMHKKKVT  254 (435)
T ss_dssp             EEEEECSSSCEEEEETTSCEE-EEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESS-SCBCCCSBCCSSCEE
T ss_pred             EEEEEeCCCEEEEeeccCCce-eEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccC-cceeEEEecccceEE
Confidence            999999999999999987543 32223334556789999999999  89999999999999975 566788899999999


Q ss_pred             EEeccccCCceEEEEEecCCeEEEEeCCCCCceeEe---eCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEE
Q 001295          506 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY---EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  582 (1106)
Q Consensus       506 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~  582 (1106)
                      +++|++..+ .+|++|+.|+.|++||+++......+   ..|...|.+++|+                     |++.+|+
T Consensus       255 ~v~~~p~~~-~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s---------------------pdg~~l~  312 (435)
T 4e54_B          255 HVALNPCCD-WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFS---------------------PDGARLL  312 (435)
T ss_dssp             EEEECTTCS-SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBC---------------------TTSSEEE
T ss_pred             eeeecCCCc-eEEEEecCcceeeEEecccccccceEEEeeeccccccceeEC---------------------CCCCeeE
Confidence            999987654 58999999999999999876544322   3444555555554                     4555899


Q ss_pred             EEECCCeEEEEECCCcceeEEEccCCCC----CCcCeEEEccCCCEEEEEe
Q 001295          583 AAGDDFSIKFWDMDSVQLLTSIDADGGL----PASPRIRFNKDGCLLAVST  629 (1106)
Q Consensus       583 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~----~~v~~v~~s~~~~~l~~~~  629 (1106)
                      +++.|+.|++||+.++.....+..+...    ..+..+.|+|++.+++++.
T Consensus       313 s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (435)
T 4e54_B          313 TTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGR  363 (435)
T ss_dssp             EEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEEC
T ss_pred             EEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEE
Confidence            9999999999999999888777654321    1233456677666666554

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.6e-33  Score=320.33  Aligned_cols=299  Identities=15%  Similarity=0.192  Sum_probs=243.7

Q ss_pred             eeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCc------eeEEEeccCCCeEEEecccc--CCc---eEE
Q 001295          450 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA------KQYIFEGHEAPVYSVCPHHK--ENI---QFI  518 (1106)
Q Consensus       450 ~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~------~~~~~~~h~~~v~~~~~~~~--~~~---~~l  518 (1106)
                      ...+.+|.+.|++++|+|  +  +|++|+.||.|++||+.+++      .+..+.+|...|.+++|+++  .++   .+|
T Consensus         9 ~~~~~~h~~~i~~~~~~~--~--~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l   84 (397)
T 1sq9_A            9 ANAGKAHDADIFSVSACN--S--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV   84 (397)
T ss_dssp             EEESSCSSSCEEEEEECS--S--EEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred             hhhhhhhhcCeEEEEecC--C--eEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence            346789999999999998  4  79999999999999999988      78899999999999999765  236   799


Q ss_pred             EEEecCCeEEEEeCCCCCc-----eeEeeCC-----CCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCE-EEEEECC
Q 001295          519 FSTALDGKIKAWLYDNLGS-----RVDYEAP-----GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR-FLAAGDD  587 (1106)
Q Consensus       519 ~s~~~dg~i~iwd~~~~~~-----~~~~~~~-----~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d  587 (1106)
                      ++++.||.|++||+.+...     ...+..+     ...|.+++|++...                 |++++ |++++.|
T Consensus        85 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----------------~~~~~~l~~~~~d  147 (397)
T 1sq9_A           85 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASND-----------------RLLSHRLVATDVK  147 (397)
T ss_dssp             EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC---------------------CEEEEEEETT
T ss_pred             EEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccC-----------------CCCceEEEEEeCC
Confidence            9999999999999988765     5555555     24455555540000                 45558 9999999


Q ss_pred             CeEEEEECCC------cceeE-----EEcc-----CCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcc
Q 001295          588 FSIKFWDMDS------VQLLT-----SIDA-----DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN  651 (1106)
Q Consensus       588 ~~i~iwd~~~------~~~~~-----~~~~-----~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  651 (1106)
                      |.|++||+.+      ++.+.     .+..     ..+...|.+++|+|++ ++++++.||.|++||+.++ +.+..+..
T Consensus       148 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-~~~~~~~~  225 (397)
T 1sq9_A          148 GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL-RPLYNFES  225 (397)
T ss_dssp             SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT-EEEEEEEC
T ss_pred             CcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC-ceeEEEec
Confidence            9999999998      77666     6644     3445679999999999 9999999999999998654 11110000


Q ss_pred             cccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCcc
Q 001295          652 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ  731 (1106)
Q Consensus       652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~  731 (1106)
                                                                                                      
T Consensus       226 --------------------------------------------------------------------------------  225 (397)
T 1sq9_A          226 --------------------------------------------------------------------------------  225 (397)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCC--
Q 001295          732 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP--  809 (1106)
Q Consensus       732 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~--  809 (1106)
                                                                                              .  ..|  
T Consensus       226 ------------------------------------------------------------------------~--~~h~~  231 (397)
T 1sq9_A          226 ------------------------------------------------------------------------Q--HSMIN  231 (397)
T ss_dssp             ------------------------------------------------------------------------C--C---C
T ss_pred             ------------------------------------------------------------------------c--ccccc
Confidence                                                                                    0  004  


Q ss_pred             -CCCeeEEEEecCCCEEEEEe-C---CeEEEEEcCCCceeeeecC-------------CCCCeeEEEEecCCCceEEEee
Q 001295          810 -EEAVPCFALSKNDSYVMSAS-G---GKISLFNMMTFKTMATFMP-------------PPPAATFLAFHPQDNNIIAIGM  871 (1106)
Q Consensus       810 -~~~v~~l~~s~~~~~l~~~s-d---g~i~vwd~~~~~~~~~~~~-------------~~~~v~~l~~s~~d~~~la~g~  871 (1106)
                       ...|.+++|+|++++|++++ |   |.|++||+.+++.+..+.+             |...|.+++|+| ++++|++|+
T Consensus       232 ~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~  310 (397)
T 1sq9_A          232 NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAG  310 (397)
T ss_dssp             CCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEE
T ss_pred             cCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECC-CCCEEEEEe
Confidence             66788888888888888887 7   8899999888888888887             899999999999 899999999


Q ss_pred             CCCcEEEEEeecceEEEEec------Cc---------------ccCeeEEEEecCC----------CEEEEEcCCCcEEE
Q 001295          872 DDSSIQIYNVRVDEVKSKLK------GH---------------SKRITGLAFSHAL----------NVLVSSGADSQLCV  920 (1106)
Q Consensus       872 ~dg~v~iwd~~~~~~~~~l~------~h---------------~~~V~~l~~s~d~----------~~l~s~s~Dg~i~v  920 (1106)
                      .||.|++||+.+++++..+.      +|               ...|++++|+|++          ++|++++.||.|++
T Consensus       311 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~i  390 (397)
T 1sq9_A          311 WDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRW  390 (397)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEE
T ss_pred             CCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEE
Confidence            99999999999999999999      88               9999999999998          79999999999999


Q ss_pred             EeCCCc
Q 001295          921 WSSDGW  926 (1106)
Q Consensus       921 wd~~~~  926 (1106)
                      |++.++
T Consensus       391 w~~~~g  396 (397)
T 1sq9_A          391 FREAGG  396 (397)
T ss_dssp             EEEEC-
T ss_pred             EEcCCC
Confidence            999874

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.7e-33  Score=323.24  Aligned_cols=361  Identities=12%  Similarity=0.155  Sum_probs=248.3

Q ss_pred             CCeEEEEECCCcceeEEEccCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCC
Q 001295          587 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKP  665 (1106)
Q Consensus       587 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  665 (1106)
                      ++.+++|++..++....+.+|  ...|.+++|+| ++++|++|+.||.|++||+.++. ....+.....           
T Consensus        22 ~~~~~v~~~~~~~~~~~~~~h--~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~-----------   87 (408)
T 4a11_B           22 ESTRRVLGLELNKDRDVERIH--GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSS-RQSYYTCKAV-----------   87 (408)
T ss_dssp             HHHHHHHTEEECTTEEECCCC--SSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCS-SSSCEEECEE-----------
T ss_pred             cCcceeeccccCcceeeeecc--CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCc-ccceEecccc-----------
Confidence            456788888888888888766  45899999999 99999999999999999998762 2211110000           


Q ss_pred             CcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccc
Q 001295          666 TISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK  745 (1106)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~  745 (1106)
                                                                             ....           .....+|...
T Consensus        88 -------------------------------------------------------~~~~-----------~~~~~~~~~~  101 (408)
T 4a11_B           88 -------------------------------------------------------CSIG-----------RDHPDVHRYS  101 (408)
T ss_dssp             -------------------------------------------------------EEEC-----------TTCTTCCSSC
T ss_pred             -------------------------------------------------------cccc-----------ccccccCCCc
Confidence                                                                   0000           0000237889


Q ss_pred             eEEEEEcC-CCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCC--
Q 001295          746 ISRLIFTN-SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND--  822 (1106)
Q Consensus       746 i~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~--  822 (1106)
                      |.+++|+| ++..+++++.||.|++|++...                      ..... +   .+...+.++++++.+  
T Consensus       102 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----------------------~~~~~-~---~~~~~~~~~~~~~~~~~  155 (408)
T 4a11_B          102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTL----------------------QTADV-F---NFEETVYSHHMSPVSTK  155 (408)
T ss_dssp             EEEEEECTTCTTCEEEEETTSEEEEEETTTT----------------------EEEEE-E---ECSSCEEEEEECSSCSS
T ss_pred             EEEEEEccCCCcEEEEEeCCCeEEEeeCCCC----------------------cccee-c---cCCCceeeeEeecCCCC
Confidence            99999999 7789999999999999987632                      21111 1   156778999999854  


Q ss_pred             -CEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCc-eEEEeeCCCcEEEEEeecce-EEEEe--------
Q 001295          823 -SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN-IIAIGMDDSSIQIYNVRVDE-VKSKL--------  890 (1106)
Q Consensus       823 -~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~-~la~g~~dg~v~iwd~~~~~-~~~~l--------  890 (1106)
                       .++++++ +|.|++||+.+++.+..+..|...|++++|+| ++. +|++|+.||.|++||+.++. .+..+        
T Consensus       156 ~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  234 (408)
T 4a11_B          156 HCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP-RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKS  234 (408)
T ss_dssp             CCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS-SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSC
T ss_pred             CcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC-CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccc
Confidence             4899888 89999999999999999999999999999999 665 69999999999999998764 34444        


Q ss_pred             -------cCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEe
Q 001295          891 -------KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH  963 (1106)
Q Consensus       891 -------~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~  963 (1106)
                             .+|...|++++|+|++++|++++.||.|++||+.+++..............  ............+.+++++.
T Consensus       235 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  312 (408)
T 4a11_B          235 QAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSK--KGLKFTVSCGCSSEFVFVPY  312 (408)
T ss_dssp             CCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCS--SCCCCEECCSSSSCEEEEEE
T ss_pred             eeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccccccccc--ccceeEEecCCCceEEEEec
Confidence                   579999999999999999999999999999999987643221111111110  11222333344556666689


Q ss_pred             CCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccce
Q 001295          964 ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPL 1043 (1106)
Q Consensus       964 d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1043 (1106)
                      ++.|++||+.+++.+..+.  +|...|++++|+|++++|++++.||.|++||+.+++.+......           ..  
T Consensus       313 ~~~i~v~d~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~-----------~~--  377 (408)
T 4a11_B          313 GSTIAVYTVYSGEQITMLK--GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDET-----------TT--  377 (408)
T ss_dssp             TTEEEEEETTTCCEEEEEC--CCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-------------------------
T ss_pred             CCEEEEEECcCCcceeeec--cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCce-----------Ee--
Confidence            9999999999999998876  88999999999999999999999999999999999877654311           01  


Q ss_pred             EEEEeCCCCCEEEEEeCCCcEEEEeecC
Q 001295         1044 VIAAHPQEPNEFALGLSDGGVHVFEPLE 1071 (1106)
Q Consensus      1044 ~~~~~~~d~~~l~t~~~Dg~v~vW~~~~ 1071 (1106)
                      ...+.+.+...+.+.+.|+.+++|+...
T Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~W~~~~  405 (408)
T 4a11_B          378 KSQLNPAFEDAWSSSDEEGGTSAWSHPQ  405 (408)
T ss_dssp             ----------------------------
T ss_pred             ccccccccceeecccCccCceeecCCcc
Confidence            1233343456677888899999998653

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=4.8e-33  Score=341.74  Aligned_cols=211  Identities=18%  Similarity=0.280  Sum_probs=176.5

Q ss_pred             ccCCCCcCeEEEEEccC-CCEEEEEeCCCeEEEEEccCCcee--eeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcE
Q 001295          407 LVKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQIYSYHGGDEV--RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI  483 (1106)
Q Consensus       407 ~~~~h~~~V~~l~~spd-g~~las~~~d~~v~iwd~~~~~~~--~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i  483 (1106)
                      .+.+|.+.|++++|+|+ +++|++|+.|++|+|||+.+....  .....+.+|...|.+++|+|+++  +|++|+.|++|
T Consensus       377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~--~l~sgs~Dg~v  454 (694)
T 3dm0_A          377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ--FALSGSWDGEL  454 (694)
T ss_dssp             EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred             hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCC--EEEEEeCCCcE
Confidence            47899999999999996 479999999999999999864321  12346889999999999999999  89999999999


Q ss_pred             EEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEe---eCCCCeeEEEEEecCCCeE
Q 001295          484 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY---EAPGRWCTTMAYSADGTRT  560 (1106)
Q Consensus       484 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~~  560 (1106)
                      +|||+.+++.+..+.+|...|.+++|+++  +.+|++|+.|++|++||..........   ..|...|.+++|+|++.  
T Consensus       455 ~vwd~~~~~~~~~~~~h~~~v~~~~~s~~--~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--  530 (694)
T 3dm0_A          455 RLWDLAAGVSTRRFVGHTKDVLSVAFSLD--NRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTL--  530 (694)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECTT--SSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSS--
T ss_pred             EEEECCCCcceeEEeCCCCCEEEEEEeCC--CCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCC--
Confidence            99999999999999999999999998754  478999999999999997643221111   23444555555555442  


Q ss_pred             EEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEcc
Q 001295          561 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS  640 (1106)
Q Consensus       561 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~  640 (1106)
                                       ...+++++.|+.|++||+.+++....+.+|  ...|.+++|+|++++|++|+.||.|++||+.
T Consensus       531 -----------------~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h--~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~  591 (694)
T 3dm0_A          531 -----------------QPTIVSASWDKTVKVWNLSNCKLRSTLAGH--TGYVSTVAVSPDGSLCASGGKDGVVLLWDLA  591 (694)
T ss_dssp             -----------------SCEEEEEETTSCEEEEETTTCCEEEEECCC--SSCEEEEEECTTSSEEEEEETTSBCEEEETT
T ss_pred             -----------------cceEEEEeCCCeEEEEECCCCcEEEEEcCC--CCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence                             146999999999999999999999888876  4479999999999999999999999999987


Q ss_pred             CC
Q 001295          641 DG  642 (1106)
Q Consensus       641 ~~  642 (1106)
                      ++
T Consensus       592 ~~  593 (694)
T 3dm0_A          592 EG  593 (694)
T ss_dssp             TT
T ss_pred             CC
Confidence            66

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-32  Score=308.51  Aligned_cols=307  Identities=12%  Similarity=0.118  Sum_probs=245.1

Q ss_pred             CcceeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEE
Q 001295          340 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI  419 (1106)
Q Consensus       340 ~~~~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~  419 (1106)
                      ..+.....+|.+.|++++|+|+|++ |++|+.||.|+|||+.+++.+..                   +.+|...|.+++
T Consensus        22 ~~~~~~l~~h~~~v~~~~~s~~~~~-l~~~~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~   81 (369)
T 3zwl_B           22 HMKAIKLTGHERPLTQVKYNKEGDL-LFSCSKDSSASVWYSLNGERLGT-------------------LDGHTGTIWSID   81 (369)
T ss_dssp             SEEEEEEECCSSCEEEEEECTTSCE-EEEEESSSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEE
T ss_pred             ccccEEEEEeeceEEEEEEcCCCCE-EEEEeCCCEEEEEeCCCchhhhh-------------------hhhcCCcEEEEE
Confidence            3344555669999999999999995 99999999999999999887763                   688999999999


Q ss_pred             EccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCC-----CcEEEEeCCCCc--
Q 001295          420 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD-----KTIKVWDATNGA--  492 (1106)
Q Consensus       420 ~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d-----~~i~iwd~~~~~--  492 (1106)
                      |+|++++|++++.||.|++||+.+++.+.   .+. |...|.+++|+|+++  ++++++.+     +.|++||+.++.  
T Consensus        82 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~  155 (369)
T 3zwl_B           82 VDCFTKYCVTGSADYSIKLWDVSNGQCVA---TWK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSAT  155 (369)
T ss_dssp             ECTTSSEEEEEETTTEEEEEETTTCCEEE---EEE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTT
T ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCcEEE---Eee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCccc
Confidence            99999999999999999999999988766   343 888999999999999  78999888     999999998654  


Q ss_pred             ---------eeEEEeccCC--CeEEEeccccCCceEEEEEecCCeEEEEeCCC-CCceeEeeCCCCeeEEEEEecCCCeE
Q 001295          493 ---------KQYIFEGHEA--PVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRT  560 (1106)
Q Consensus       493 ---------~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~  560 (1106)
                               .+..+..|..  .+.+++|+++  +.+|++++.||.|++||+++ ......+..+...|.+++|+|+++  
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~--  231 (369)
T 3zwl_B          156 HELTKVSEEPIHKIITHEGLDAATVAGWSTK--GKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLT--  231 (369)
T ss_dssp             CCEEEECSSCSEEEECCTTCCCEEEEEECGG--GCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSS--
T ss_pred             eeecccccceeeeccCCcCccceeEEEEcCC--CCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCC--
Confidence                     4455666766  8999998764  47999999999999999998 455556666666666666665554  


Q ss_pred             EEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEcc
Q 001295          561 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS  640 (1106)
Q Consensus       561 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~  640 (1106)
                                         +|++++.|+.|++||+.+++.+..+..   ...+.+++|+|+++++++++.++...+|...
T Consensus       232 -------------------~l~~~~~d~~i~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  289 (369)
T 3zwl_B          232 -------------------YFITSSRDTNSFLVDVSTLQVLKKYET---DCPLNTAVITPLKEFIILGGGQEAKDVTTTS  289 (369)
T ss_dssp             -------------------EEEEEETTSEEEEEETTTCCEEEEEEC---SSCEEEEEECSSSSEEEEEECCC--------
T ss_pred             -------------------EEEEecCCceEEEEECCCCceeeeecC---CCCceeEEecCCCceEEEeecCCCceEEEEe
Confidence                               799999999999999999999988873   3468999999999999999999876666442


Q ss_pred             CCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceee
Q 001295          641 DGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKV  720 (1106)
Q Consensus       641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v  720 (1106)
                      ..                                                                      .....+++
T Consensus       290 ~~----------------------------------------------------------------------~~~~~i~~  299 (369)
T 3zwl_B          290 AN----------------------------------------------------------------------EGKFEARF  299 (369)
T ss_dssp             ---------------------------------------------------------------------------CEEEE
T ss_pred             cC----------------------------------------------------------------------CCcceeEE
Confidence            21                                                                      00125667


Q ss_pred             EecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeecccc
Q 001295          721 WKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRT  775 (1106)
Q Consensus       721 w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  775 (1106)
                      |+.........+       .+|...|.+++|+|++++|++++.||.|++|++...
T Consensus       300 ~d~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  347 (369)
T 3zwl_B          300 YHKIFEEEIGRV-------QGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKS  347 (369)
T ss_dssp             EETTTCCEEEEE-------ECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred             EecCCCcchhhe-------ecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence            776543221111       247889999999999999999999999999998754

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=7.4e-33  Score=311.43  Aligned_cols=299  Identities=11%  Similarity=0.166  Sum_probs=238.7

Q ss_pred             eeccccCCeeEEEEcCCCCceEEEEecC---CCcEEEEeCCCCceeEEE-eccCCCeEEEeccccC-CceEEEEEecCCe
Q 001295          452 EIDAHVGGVNDIAFSHPNKQLCVITCGD---DKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKE-NIQFIFSTALDGK  526 (1106)
Q Consensus       452 ~l~~h~~~V~~~~~s~d~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~-~~~~l~s~~~dg~  526 (1106)
                      .+.+|...|.+++|+|++.. ++++|+.   |+.|++||+.+++..... .+|...|.+++|+++. ++.+|++++.||.
T Consensus        13 ~~~~h~~~v~~~~~~p~~~~-l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~   91 (357)
T 3i2n_A           13 IQKGFNYTVFDCKWVPCSAK-FVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN   91 (357)
T ss_dssp             EEEECSSCEEEEEECTTSSE-EEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred             hccCCCCceEEEEEcCCCce-EEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence            45689999999999999975 5677776   999999999998876543 3799999999998763 2579999999999


Q ss_pred             EEEEeCCCCC-ceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcc-eeEEE
Q 001295          527 IKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-LLTSI  604 (1106)
Q Consensus       527 i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~  604 (1106)
                      |++||+.+.. ....+..|...|.++.|.+.               ++|+|++++|++++.|+.|++||+.+++ .+..+
T Consensus        92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  156 (357)
T 3i2n_A           92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGG---------------LGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANM  156 (357)
T ss_dssp             EEEECTTSCSSCSEEECCCSSCEEEEEEESG---------------GGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEE
T ss_pred             EEEEeCCCCCccEEEEEecccceEEEeeccc---------------cccCCCccEEEEEeCCCeEEEEeCCCCCCcceec
Confidence            9999999887 77788888888888876542               2356677799999999999999999887 67777


Q ss_pred             ccCCC--CCCcCeEE----EccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhh
Q 001295          605 DADGG--LPASPRIR----FNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAA  678 (1106)
Q Consensus       605 ~~~~~--~~~v~~v~----~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  678 (1106)
                      ..+..  ...+.+++    |+|+++++++++.||.|++||+.++.. ...                              
T Consensus       157 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~------------------------------  205 (357)
T 3i2n_A          157 EPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL-RWE------------------------------  205 (357)
T ss_dssp             CCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE-EEE------------------------------
T ss_pred             cccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce-eee------------------------------
Confidence            65433  23677787    788999999999999999999866510 000                              


Q ss_pred             cccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceE
Q 001295          679 TSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAI  758 (1106)
Q Consensus       679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  758 (1106)
                                                                                   .                  
T Consensus       206 -------------------------------------------------------------~------------------  206 (357)
T 3i2n_A          206 -------------------------------------------------------------T------------------  206 (357)
T ss_dssp             -------------------------------------------------------------E------------------
T ss_pred             -------------------------------------------------------------c------------------
Confidence                                                                         0                  


Q ss_pred             EEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEec---CCCEEEEEe-CCeEE
Q 001295          759 LALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK---NDSYVMSAS-GGKIS  834 (1106)
Q Consensus       759 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~---~~~~l~~~s-dg~i~  834 (1106)
                                                                       .|...|.+++|+|   ++.++++++ ||.|+
T Consensus       207 -------------------------------------------------~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~  237 (357)
T 3i2n_A          207 -------------------------------------------------NIKNGVCSLEFDRKDISMNKLVATSLEGKFH  237 (357)
T ss_dssp             -------------------------------------------------ECSSCEEEEEESCSSSSCCEEEEEESTTEEE
T ss_pred             -------------------------------------------------CCCCceEEEEcCCCCCCCCEEEEECCCCeEE
Confidence                                                             0445566677777   677777776 67777


Q ss_pred             EEEcCCCceeeeec-----CCCCCeeEEEEecCCCc-eEEEeeCCCcEEEEEeecc-------------------eEEEE
Q 001295          835 LFNMMTFKTMATFM-----PPPPAATFLAFHPQDNN-IIAIGMDDSSIQIYNVRVD-------------------EVKSK  889 (1106)
Q Consensus       835 vwd~~~~~~~~~~~-----~~~~~v~~l~~s~~d~~-~la~g~~dg~v~iwd~~~~-------------------~~~~~  889 (1106)
                      +||+.+++....+.     +|...|++++|+| ++. +|++|+.||.|++||+.++                   +.+..
T Consensus       238 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~  316 (357)
T 3i2n_A          238 VFDMRTQHPTKGFASVSEKAHKSTVWQVRHLP-QNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQN  316 (357)
T ss_dssp             EEEEEEEETTTEEEEEEEECCSSCEEEEEEET-TEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEE
T ss_pred             EEeCcCCCcccceeeeccCCCcCCEEEEEECC-CCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeec
Confidence            77777665555444     8999999999999 776 8999999999999999853                   56788


Q ss_pred             ecCcccCeeEEEEecCCCEEE-EEcCCCcEEEEeCCCc
Q 001295          890 LKGHSKRITGLAFSHALNVLV-SSGADSQLCVWSSDGW  926 (1106)
Q Consensus       890 l~~h~~~V~~l~~s~d~~~l~-s~s~Dg~i~vwd~~~~  926 (1106)
                      +.+|...|++++|+|++++|+ +++.|+.|++||+.+.
T Consensus       317 ~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~  354 (357)
T 3i2n_A          317 VTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL  354 (357)
T ss_dssp             EECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred             cccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence            899999999999999999998 8999999999999874

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=9.3e-33  Score=300.57  Aligned_cols=254  Identities=16%  Similarity=0.200  Sum_probs=207.4

Q ss_pred             ccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCc--ceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc--
Q 001295          347 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR--ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--  422 (1106)
Q Consensus       347 ~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~--~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp--  422 (1106)
                      .+|.+.|++++|+|+|++ ||+|+.|++|+|||+.++  +.+.                   .+.+|.+.|.+++|+|  
T Consensus         6 ~~h~~~V~~~~~s~~g~~-las~s~D~~v~iw~~~~~~~~~~~-------------------~l~gH~~~V~~v~~s~~~   65 (297)
T 2pm7_B            6 NAHNEMIHDAVMDYYGKR-MATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAHPK   65 (297)
T ss_dssp             CSCSSCEEEEEECTTSSE-EEEEETTSCEEEEEBCSSCBCCCE-------------------EECCCSSCEEEEEECCGG
T ss_pred             cCCcCceEEEEECCCCCE-EEEEeCCCEEEEEecCCCCcEEEE-------------------EEccccCCeEEEEecCCC
Confidence            359999999999999995 999999999999999753  3332                   3789999999999987  


Q ss_pred             CCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCC--CCceEEEEecCCCcEEEEeCCCCc--eeEEEe
Q 001295          423 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNGA--KQYIFE  498 (1106)
Q Consensus       423 dg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~  498 (1106)
                      +|++||+|+.|++|+|||+.+++.. ....+.+|...|.+++|+|+  +.  +|++++.|++|++||++++.  ....+.
T Consensus        66 ~g~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~~~~~~  142 (297)
T 2pm7_B           66 FGTILASCSYDGKVMIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTSPIIID  142 (297)
T ss_dssp             GCSEEEEEETTTEEEEEEBSSSCBC-CCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBCCEEEE
T ss_pred             cCCEEEEEcCCCEEEEEEcCCCceE-EEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCceeeeeee
Confidence            4899999999999999999987522 23357789999999999998  67  89999999999999998764  246788


Q ss_pred             ccCCCeEEEeccccC-----------CceEEEEEecCCeEEEEeCCCCC----ceeEeeCCCCeeEEEEEecCCCeEEEe
Q 001295          499 GHEAPVYSVCPHHKE-----------NIQFIFSTALDGKIKAWLYDNLG----SRVDYEAPGRWCTTMAYSADGTRTYQG  563 (1106)
Q Consensus       499 ~h~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~~~~~~~~  563 (1106)
                      +|...|.+++|++..           ++.+|++|+.|++|++||+++..    ....+..|...|.+++|+|++.     
T Consensus       143 ~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~-----  217 (297)
T 2pm7_B          143 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL-----  217 (297)
T ss_dssp             CCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS-----
T ss_pred             cccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCC-----
Confidence            999999999998752           24689999999999999998765    3345667777777777777641     


Q ss_pred             eeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcc---eeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEcc
Q 001295          564 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ---LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS  640 (1106)
Q Consensus       564 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~  640 (1106)
                                   .+.+|++++.|++|++||+.++.   ....+..+.+...|.+++|+|++++|++++.||.|++|+..
T Consensus       218 -------------~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          218 -------------LRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             -------------SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             -------------CceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence                         02479999999999999997743   12233223445679999999999999999999999999975


Q ss_pred             C
Q 001295          641 D  641 (1106)
Q Consensus       641 ~  641 (1106)
                      .
T Consensus       285 ~  285 (297)
T 2pm7_B          285 L  285 (297)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=7.8e-33  Score=314.33  Aligned_cols=249  Identities=14%  Similarity=0.203  Sum_probs=193.2

Q ss_pred             ccCCCCcEEEEEecCC-CeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc-CC
Q 001295          347 LNQGSSPMSMDFHPVQ-QTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DG  424 (1106)
Q Consensus       347 ~~h~~~v~~~~~sp~g-~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg  424 (1106)
                      .+|...|++++|+|+| + +|++|+.||.|+|||+.+++.....                 .+.+|...|.+++|+| ++
T Consensus        70 ~~h~~~v~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~-----------------~~~~h~~~v~~~~~~~~~~  131 (383)
T 3ei3_B           70 SPFDRRVTSLEWHPTHPT-TVAVGSKGGDIILWDYDVQNKTSFI-----------------QGMGPGDAITGMKFNQFNT  131 (383)
T ss_dssp             CCCSSCEEEEEECSSCTT-EEEEEEBTSCEEEEETTSTTCEEEE-----------------CCCSTTCBEEEEEEETTEE
T ss_pred             cCCCCCEEEEEECCCCCC-EEEEEcCCCeEEEEeCCCcccceee-----------------ecCCcCCceeEEEeCCCCC
Confidence            4599999999999999 6 6999999999999999988766431                 1347999999999999 78


Q ss_pred             CEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCe
Q 001295          425 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV  504 (1106)
Q Consensus       425 ~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v  504 (1106)
                      ++|++++.|+.|++||+.+ ..+.......+|...|.+++|+|+++  +|++|+.|+.|++||+ +++.+..+.+|...|
T Consensus       132 ~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v  207 (383)
T 3ei3_B          132 NQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ--MLATGDSTGRLLLLGL-DGHEIFKEKLHKAKV  207 (383)
T ss_dssp             EEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT--EEEEEETTSEEEEEET-TSCEEEEEECSSSCE
T ss_pred             CEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC--EEEEECCCCCEEEEEC-CCCEEEEeccCCCcE
Confidence            9999999999999999996 44444334445668999999999999  8999999999999998 688899999999999


Q ss_pred             EEEeccccCCce-EEEEEecCCeEEEEeCCCCC----ceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcC-CC
Q 001295          505 YSVCPHHKENIQ-FIFSTALDGKIKAWLYDNLG----SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT-TK  578 (1106)
Q Consensus       505 ~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~-~~  578 (1106)
                      .+++|+++.  . +|++++.|+.|++||+++..    ....+ .+...                     +.+++|+| ++
T Consensus       208 ~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~---------------------v~~~~~s~~~~  263 (383)
T 3ei3_B          208 THAEFNPRC--DWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKP---------------------VNAAYFNPTDS  263 (383)
T ss_dssp             EEEEECSSC--TTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSC---------------------EEEEEECTTTS
T ss_pred             EEEEECCCC--CCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCc---------------------eEEEEEcCCCC
Confidence            999997654  5 89999999999999998732    22222 34444                     44555555 55


Q ss_pred             CEEEEEECCCeEEEEECCCcceeEEEccCC-----CCCCcCeEEEccCCCEEEE---------EeCCCcEEEEEccCC
Q 001295          579 NRFLAAGDDFSIKFWDMDSVQLLTSIDADG-----GLPASPRIRFNKDGCLLAV---------STNDNGIKILATSDG  642 (1106)
Q Consensus       579 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~s~~~~~l~~---------~~~dg~i~iwd~~~~  642 (1106)
                      .+|++++.|+.|++||+.+++....+..+.     +...+. +.|+|++..+++         ++.||.|++||+.++
T Consensus       264 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~  340 (383)
T 3ei3_B          264 TKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIK-ATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSG  340 (383)
T ss_dssp             CEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCC-CEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTC
T ss_pred             CEEEEEcCCCcEEEEECCCCccccccccccccccccccceE-EeccCCCCceEEEecCCcccccCCCCeEEEEecCCC
Confidence            689999999999999999988777665442     122233 456665555543         345555666655444

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=8.1e-33  Score=314.24  Aligned_cols=308  Identities=12%  Similarity=0.158  Sum_probs=239.3

Q ss_pred             EEECCCcceeEEEccCCCCCCcCeEEEccCC-CEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCch
Q 001295          592 FWDMDSVQLLTSIDADGGLPASPRIRFNKDG-CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPI  670 (1106)
Q Consensus       592 iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  670 (1106)
                      +|++...+....+..|  ...|.+++|+|++ ++|++|+.||.|++||+.++. ....+                     
T Consensus        57 ~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~---------------------  112 (383)
T 3ei3_B           57 IRSLKSYKLHRTASPF--DRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQN-KTSFI---------------------  112 (383)
T ss_dssp             HHHHTTCEEEEEECCC--SSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTT-CEEEE---------------------
T ss_pred             cccccccceEEeccCC--CCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcc-cceee---------------------
Confidence            3444556666777655  4589999999999 999999999999999987651 11100                     


Q ss_pred             hhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEE
Q 001295          671 SAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLI  750 (1106)
Q Consensus       671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  750 (1106)
                                                                         ..                .+|...|.+++
T Consensus       113 ---------------------------------------------------~~----------------~~h~~~v~~~~  125 (383)
T 3ei3_B          113 ---------------------------------------------------QG----------------MGPGDAITGMK  125 (383)
T ss_dssp             ---------------------------------------------------CC----------------CSTTCBEEEEE
T ss_pred             ---------------------------------------------------ec----------------CCcCCceeEEE
Confidence                                                               00                13778999999


Q ss_pred             EcC-CCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe
Q 001295          751 FTN-SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS  829 (1106)
Q Consensus       751 ~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s  829 (1106)
                      |+| +++.+++++.|+.|++||+....                       .........+...|.+++|+|++++|++++
T Consensus       126 ~~~~~~~~l~s~~~d~~i~iwd~~~~~-----------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  182 (383)
T 3ei3_B          126 FNQFNTNQLFVSSIRGATTLRDFSGSV-----------------------IQVFAKTDSWDYWYCCVDVSVSRQMLATGD  182 (383)
T ss_dssp             EETTEEEEEEEEETTTEEEEEETTSCE-----------------------EEEEECCCCSSCCEEEEEEETTTTEEEEEE
T ss_pred             eCCCCCCEEEEEeCCCEEEEEECCCCc-----------------------eEEEeccCCCCCCeEEEEECCCCCEEEEEC
Confidence            999 78999999999999999976311                       000011112568899999999999999999


Q ss_pred             -CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCc-eEEEeeCCCcEEEEEeec----ceEEEEecCcccCeeEEEEe
Q 001295          830 -GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN-IIAIGMDDSSIQIYNVRV----DEVKSKLKGHSKRITGLAFS  903 (1106)
Q Consensus       830 -dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~-~la~g~~dg~v~iwd~~~----~~~~~~l~~h~~~V~~l~~s  903 (1106)
                       |+.|++||+ +++.+..+.+|...|.+++|+| +++ +|++|+.||.|++||+.+    +.++..+ +|...|++++|+
T Consensus       183 ~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s  259 (383)
T 3ei3_B          183 STGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFN  259 (383)
T ss_dssp             TTSEEEEEET-TSCEEEEEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEEC
T ss_pred             CCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEc
Confidence             899999999 5778888999999999999999 676 999999999999999998    6676666 699999999999


Q ss_pred             c-CCCEEEEEcCCCcEEEEeCCCcccccceeeccc--CCCCC-------CCCCCceEEEcCCCcEEEEEeCCeEEEEecC
Q 001295          904 H-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP--TGRTP-------TAQSDTRVQFHQDQIHFLVVHETQLAIFETT  973 (1106)
Q Consensus       904 ~-d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~--~~~~~-------~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~  973 (1106)
                      | ++.+|++++.|+.|++||+.+++..........  ..+..       ....+..++|+|||++ ..+.|+.|++||+.
T Consensus       260 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~  338 (383)
T 3ei3_B          260 PTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDAN  338 (383)
T ss_dssp             TTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETT
T ss_pred             CCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecC
Confidence            9 999999999999999999998765432211110  01110       0012223555555555 22478999999999


Q ss_pred             CceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCC
Q 001295          974 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1018 (1106)
Q Consensus       974 ~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~ 1018 (1106)
                      +++++..+....|...+.+++|+||+++|++|+ ||.|+|||+++
T Consensus       339 ~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          339 SGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             TCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             CCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            999999887555778899999999999999997 99999999875

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=8.3e-34  Score=327.54  Aligned_cols=311  Identities=13%  Similarity=0.128  Sum_probs=227.0

Q ss_pred             cCCCCcCeEEEEEcc-CCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcC-CCCceEEEEecCCCcEEE
Q 001295          408 VKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKV  485 (1106)
Q Consensus       408 ~~~h~~~V~~l~~sp-dg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~-d~~~~~l~s~~~d~~i~i  485 (1106)
                      ..+|...|+||+|+| ++++||+|+.||+|+|||+.+++... ...+.+|.+.|++|+|+| ++.  +|+||+.|++|++
T Consensus       115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~-~~~~~gH~~~V~~l~f~p~~~~--~l~s~s~D~~v~i  191 (435)
T 4e54_B          115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPT-FIKGIGAGGSITGLKFNPLNTN--QFYASSMEGTTRL  191 (435)
T ss_dssp             EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCE-EECCCSSSCCCCEEEECSSCTT--EEEEECSSSCEEE
T ss_pred             CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCcee-EEEccCCCCCEEEEEEeCCCCC--EEEEEeCCCEEEE
Confidence            457888999999999 67899999999999999998876433 335678999999999998 566  8999999999999


Q ss_pred             EeCCCCceeEEEeccC--CCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEe
Q 001295          486 WDATNGAKQYIFEGHE--APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG  563 (1106)
Q Consensus       486 wd~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~  563 (1106)
                      ||++++........|.  ..+.+++|+  +++.+|++|+.||.|++||++. +.+..+..|...|.+++|+|++.     
T Consensus       192 wd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~-----  263 (435)
T 4e54_B          192 QDFKGNILRVFASSDTINIWFCSLDVS--ASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCD-----  263 (435)
T ss_dssp             EETTSCEEEEEECCSSCSCCCCCEEEE--TTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCS-----
T ss_pred             eeccCCceeEEeccCCCCccEEEEEEC--CCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCc-----
Confidence            9998765544444333  446677765  4558999999999999999874 45556677777788877777764     


Q ss_pred             eeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEc-cCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295          564 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       564 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                                     .++++++.|+.|++||+.+++....+. ...|...|.+++|+|+|++|++++.||.|++||+.++
T Consensus       264 ---------------~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~  328 (435)
T 4e54_B          264 ---------------WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW  328 (435)
T ss_dssp             ---------------SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS
T ss_pred             ---------------eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCC
Confidence                           257889999999999998876554432 2234568999999999999999999999999999877


Q ss_pred             chhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEe
Q 001295          643 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK  722 (1106)
Q Consensus       643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~  722 (1106)
                       .....+..|.....                                                                 
T Consensus       329 -~~~~~~~~~~~~~~-----------------------------------------------------------------  342 (435)
T 4e54_B          329 -DCPLGLIPHPHRHF-----------------------------------------------------------------  342 (435)
T ss_dssp             -SSEEEECCCCCCCC-----------------------------------------------------------------
T ss_pred             -ccceEEeccccccc-----------------------------------------------------------------
Confidence             22222222111000                                                                 


Q ss_pred             cCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCcccc
Q 001295          723 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN  802 (1106)
Q Consensus       723 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  802 (1106)
                                         ....+....|+|++..+++                                          
T Consensus       343 -------------------~~~~~~~~~~~~~~~~~~~------------------------------------------  361 (435)
T 4e54_B          343 -------------------QHLTPIKAAWHPRYNLIVV------------------------------------------  361 (435)
T ss_dssp             -------------------SSSCCCBCEECSSSSCEEE------------------------------------------
T ss_pred             -------------------ccceeEEEEEcCCCCEEEE------------------------------------------
Confidence                               0011122344455444433                                          


Q ss_pred             ccCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCCceeeeec-CCCCCeeEE-EEecCCCceEEEeeCCCcEEE
Q 001295          803 DVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFM-PPPPAATFL-AFHPQDNNIIAIGMDDSSIQI  878 (1106)
Q Consensus       803 ~~~~~~~~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~-~~~~~v~~l-~~s~~d~~~la~g~~dg~v~i  878 (1106)
                                    ++++++..++++.  ++.|++||..+++.+..+. +|...|.++ +|+| ++++||+|+ |+.|+|
T Consensus       362 --------------~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fsp-dg~~lasg~-d~~i~i  425 (435)
T 4e54_B          362 --------------GRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNP-MGDTLASAM-GYHILI  425 (435)
T ss_dssp             --------------ECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECT-TSSCEEEEC-SSEEEE
T ss_pred             --------------EEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECC-CCCEEEEEc-CCcEEE
Confidence                          3334444444443  4679999999999888764 677788887 6999 899999886 789999


Q ss_pred             EEeecceEE
Q 001295          879 YNVRVDEVK  887 (1106)
Q Consensus       879 wd~~~~~~~  887 (1106)
                      |++++++..
T Consensus       426 W~~~~gk~r  434 (435)
T 4e54_B          426 WSQQEARTR  434 (435)
T ss_dssp             CCCC-----
T ss_pred             EECCcCeee
Confidence            999988753

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.8e-32  Score=308.28  Aligned_cols=322  Identities=14%  Similarity=0.197  Sum_probs=238.4

Q ss_pred             ccCCCCcCeEEEEEccCCCEEE-EEeC---CCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCC---CCceEEEEecC
Q 001295          407 LVKDPGVSVNRVIWSPDGSLFG-VAYS---RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP---NKQLCVITCGD  479 (1106)
Q Consensus       407 ~~~~h~~~V~~l~~spdg~~la-s~~~---d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d---~~~~~l~s~~~  479 (1106)
                      ++.+|...|.+++|+|++..++ +|+.   |+.|+|||+.+++....  ...+|...|.+++|+|+   +.  +|++|+.
T Consensus        13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~--~l~~~~~   88 (357)
T 3i2n_A           13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL--REIEKAKPIKCGTFGATSLQQR--YLATGDF   88 (357)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE--EEEEESSCEEEEECTTCCTTTC--CEEEEET
T ss_pred             hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce--eeecccCcEEEEEEcCCCCCCc--eEEEecC
Confidence            5678999999999999997655 5555   89999999998875432  23379999999999999   57  7999999


Q ss_pred             CCcEEEEeCCCCc-eeEEEeccCCCeEEEeccc----cCCceEEEEEecCCeEEEEeCCCCC-ceeEeeCCCC----eeE
Q 001295          480 DKTIKVWDATNGA-KQYIFEGHEAPVYSVCPHH----KENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGR----WCT  549 (1106)
Q Consensus       480 d~~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~~----~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~----~v~  549 (1106)
                      |+.|++||+.+++ .+..+.+|...|.+++|.+    ++++.+|++++.||.|++||+++.. ....+..+..    .+.
T Consensus        89 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~  168 (357)
T 3i2n_A           89 GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCW  168 (357)
T ss_dssp             TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEE
T ss_pred             CCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceE
Confidence            9999999999988 8999999999999997643    4667899999999999999999876 4555544333    444


Q ss_pred             EEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEcc---CCCEEE
Q 001295          550 TMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK---DGCLLA  626 (1106)
Q Consensus       550 ~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~---~~~~l~  626 (1106)
                      +++|.+                 +|+|+++++++++.|+.|++||+.+++...... +  ...|.+++|+|   ++.+++
T Consensus       169 ~~~~~~-----------------~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~--~~~v~~~~~~~~~~~~~~l~  228 (357)
T 3i2n_A          169 TVAFGN-----------------AYNQEERVVCAGYDNGDIKLFDLRNMALRWETN-I--KNGVCSLEFDRKDISMNKLV  228 (357)
T ss_dssp             EEEEEC-----------------CCC-CCCEEEEEETTSEEEEEETTTTEEEEEEE-C--SSCEEEEEESCSSSSCCEEE
T ss_pred             EEEEEe-----------------ccCCCCCEEEEEccCCeEEEEECccCceeeecC-C--CCceEEEEcCCCCCCCCEEE
Confidence            444311                 256677799999999999999999988765543 2  34699999999   999999


Q ss_pred             EEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCC
Q 001295          627 VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADV  706 (1106)
Q Consensus       627 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  706 (1106)
                      +++.||.|++||+.++ .....+..                                                       
T Consensus       229 ~~~~dg~i~i~d~~~~-~~~~~~~~-------------------------------------------------------  252 (357)
T 3i2n_A          229 ATSLEGKFHVFDMRTQ-HPTKGFAS-------------------------------------------------------  252 (357)
T ss_dssp             EEESTTEEEEEEEEEE-ETTTEEEE-------------------------------------------------------
T ss_pred             EECCCCeEEEEeCcCC-Ccccceee-------------------------------------------------------
Confidence            9999999999998765 22111100                                                       


Q ss_pred             CccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCc-eEEEeecCceEEEeeccccccCCCCcccc
Q 001295          707 KPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATA  785 (1106)
Q Consensus       707 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~  785 (1106)
                                    ...                .+|...|.+++|+|+++ ++++++.||.|++|++...          
T Consensus       253 --------------~~~----------------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------  292 (357)
T 3i2n_A          253 --------------VSE----------------KAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYP----------  292 (357)
T ss_dssp             --------------EEE----------------ECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECC----------
T ss_pred             --------------ecc----------------CCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCC----------
Confidence                          000                12667788888888887 7888888888888886521          


Q ss_pred             ccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCc
Q 001295          786 SVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN  865 (1106)
Q Consensus       786 ~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~  865 (1106)
                                  ....               .+.+++.....  .+        +.+.+..+.+|...|++++|+| +++
T Consensus       293 ------------~~~~---------------~~~~~g~~~~~--~~--------~~~~~~~~~~~~~~v~~~~~s~-~~~  334 (357)
T 3i2n_A          293 ------------IQRS---------------KKDSEGIEMGV--AG--------SVSLLQNVTLSTQPISSLDWSP-DKR  334 (357)
T ss_dssp             ------------SCC-----------------CCTTSCCCCC--CC--------EEEEEEEEECCSSCEEEEEECS-SST
T ss_pred             ------------cccc---------------cccCCCCcccc--cc--------ccceeeccccCCCCeeEEEEcC-CCC
Confidence                        0000               01111111100  11        1245567788999999999999 788


Q ss_pred             eEE-EeeCCCcEEEEEeecceE
Q 001295          866 IIA-IGMDDSSIQIYNVRVDEV  886 (1106)
Q Consensus       866 ~la-~g~~dg~v~iwd~~~~~~  886 (1106)
                      +|+ +|+.||.|++||+.+.+.
T Consensus       335 ~l~~s~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          335 GLCVCSSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             TEEEEEETTSEEEEEEECC---
T ss_pred             eEEEEecCCCcEEEEECCCccc
Confidence            887 899999999999987654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.6e-32  Score=309.80  Aligned_cols=310  Identities=17%  Similarity=0.246  Sum_probs=239.1

Q ss_pred             cCCCCcEEEEEecC---CCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccC-
Q 001295          348 NQGSSPMSMDFHPV---QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD-  423 (1106)
Q Consensus       348 ~h~~~v~~~~~sp~---g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd-  423 (1106)
                      +|.+.|++++|+|+   +..++++++.++.|+|||+.+++.+....-              .....|...|.+++|+|+ 
T Consensus        16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~--------------~~~~~~~~~v~~~~~~~~~   81 (366)
T 3k26_A           16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQS--------------YVDADADENFYTCAWTYDS   81 (366)
T ss_dssp             TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEE--------------EECSCTTCCEEEEEEEECT
T ss_pred             CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeee--------------ccccCCCCcEEEEEeccCC
Confidence            59999999999985   444566667778999999998876643110              012357889999999999 


Q ss_pred             ---CCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcC-CCCceEEEEecCCCcEEEEeCCCCceeEEE--
Q 001295          424 ---GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIF--  497 (1106)
Q Consensus       424 ---g~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--  497 (1106)
                         |++|++|+.||.|++||+.+++.+.   .+.+|...|.+++|+| ++.  +|++|+.|+.|++||+.+++.+..+  
T Consensus        82 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~  156 (366)
T 3k26_A           82 NTSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIFGG  156 (366)
T ss_dssp             TTCCEEEEEEETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTEEEEEECS
T ss_pred             CCCCCEEEEecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCeEEEEecc
Confidence               6799999999999999999987665   5778999999999999 777  8999999999999999999999998  


Q ss_pred             -eccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCC-------------eEEEe
Q 001295          498 -EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT-------------RTYQG  563 (1106)
Q Consensus       498 -~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-------------~~~~~  563 (1106)
                       .+|...|.+++|++  ++.+|++++.||.|++||+++......+..      .+.+++++.             .....
T Consensus       157 ~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (366)
T 3k26_A          157 VEGHRDEVLSADYDL--LGEKIMSCGMDHSLKLWRINSKRMMNAIKE------SYDYNPNKTNRPFISQKIHFPDFSTRD  228 (366)
T ss_dssp             TTSCSSCEEEEEECT--TSSEEEEEETTSCEEEEESCSHHHHHHHHH------HHTCCGGGCSSCCCCEEECCCSEEECS
T ss_pred             cccccCceeEEEECC--CCCEEEEecCCCCEEEEECCCCccccccce------eEEecCCCCcccccceeeccCcccccc
Confidence             78999999999876  457999999999999999987554332221      001111111             00011


Q ss_pred             eeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcce--------------eEEEccCCCCCCcCeEEEccC--CCEEEE
Q 001295          564 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL--------------LTSIDADGGLPASPRIRFNKD--GCLLAV  627 (1106)
Q Consensus       564 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~v~~s~~--~~~l~~  627 (1106)
                      .+...+.+++|+  ++++++++.|+.|++||+.+++.              +..+..+  ...|.+++|+|+  +++|++
T Consensus       229 ~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~~l~~  304 (366)
T 3k26_A          229 IHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS--QCDIWYMRFSMDFWQKMLAL  304 (366)
T ss_dssp             SCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS--SCCSSCCCCEECTTSSEEEE
T ss_pred             CCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc--CCcEEEEEEcCCCCCcEEEE
Confidence            133466667776  56899999999999999987654              6666655  447999999999  999999


Q ss_pred             EeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCC
Q 001295          628 STNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVK  707 (1106)
Q Consensus       628 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  707 (1106)
                      |+.||.|++||+.++. ......                                                         
T Consensus       305 ~~~dg~i~vwd~~~~~-~~~~~~---------------------------------------------------------  326 (366)
T 3k26_A          305 GNQVGKLYVWDLEVED-PHKAKC---------------------------------------------------------  326 (366)
T ss_dssp             ECTTSCEEEEECCSSS-GGGCEE---------------------------------------------------------
T ss_pred             EecCCcEEEEECCCCC-Cccccc---------------------------------------------------------
Confidence            9999999999998762 211000                                                         


Q ss_pred             ccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeecc
Q 001295          708 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQ  773 (1106)
Q Consensus       708 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  773 (1106)
                                 .                .+....+...|.+++|+|++++|++++.||.|++||+.
T Consensus       327 -----------~----------------~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          327 -----------T----------------TLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             -----------E----------------EECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             -----------e----------------EEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence                       0                00001136889999999999999999999999999974

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.8e-32  Score=310.25  Aligned_cols=244  Identities=13%  Similarity=0.114  Sum_probs=204.8

Q ss_pred             CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcc--eeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCE
Q 001295          349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE--RLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  426 (1106)
Q Consensus       349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~  426 (1106)
                      |.+.|++++|+|+|+ +|++|+.|+.|+|||+.+++  .+.                   .+.+|...|.+++|+|++++
T Consensus         7 ~~~~i~~~~~s~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~   66 (372)
T 1k8k_C            7 LVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVH-------------------ELKEHNGQVTGVDWAPDSNR   66 (372)
T ss_dssp             CSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEE-------------------EEECCSSCEEEEEEETTTTE
T ss_pred             cCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCcEEeee-------------------eecCCCCcccEEEEeCCCCE
Confidence            889999999999999 49999999999999999876  333                   36789999999999999999


Q ss_pred             EEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCce---eE-EEeccCC
Q 001295          427 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK---QY-IFEGHEA  502 (1106)
Q Consensus       427 las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~---~~-~~~~h~~  502 (1106)
                      |++++.|+.|++||+.+++... ...+.+|...|.+++|+|+++  +|++++.|+.|++||+.++..   .. ...+|..
T Consensus        67 l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~  143 (372)
T 1k8k_C           67 IVTCGTDRNAYVWTLKGRTWKP-TLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS  143 (372)
T ss_dssp             EEEEETTSCEEEEEEETTEEEE-EEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS
T ss_pred             EEEEcCCCeEEEEECCCCeeee-eEEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecccCC
Confidence            9999999999999999876443 224578999999999999999  899999999999999998773   33 3367899


Q ss_pred             CeEEEeccccCCceEEEEEecCCeEEEEeCCC------------------CCceeEeeCCCCeeEEEEEecCCCeEEEee
Q 001295          503 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDN------------------LGSRVDYEAPGRWCTTMAYSADGTRTYQGF  564 (1106)
Q Consensus       503 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~------------------~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~  564 (1106)
                      .|.+++|++  ++.+|++++.||.|++||++.                  ......+..+...                 
T Consensus       144 ~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------  204 (372)
T 1k8k_C          144 TVLSLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW-----------------  204 (372)
T ss_dssp             CEEEEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSC-----------------
T ss_pred             CeeEEEEcC--CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCe-----------------
Confidence            999999876  447999999999999999752                  2333334344444                 


Q ss_pred             eccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccC
Q 001295          565 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD  641 (1106)
Q Consensus       565 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~  641 (1106)
                          +.+++|+|++++|++++.|+.|++||+.+++.+..+..+.  ..|.+++|+|++.++++| .|+.|++|++.+
T Consensus       205 ----v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          205 ----VHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET--LPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             ----EEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSS--CCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             ----EEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCC--CCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence                4455555555689999999999999999999999998664  479999999999998888 899999999987

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.2e-32  Score=314.63  Aligned_cols=253  Identities=11%  Similarity=0.101  Sum_probs=209.9

Q ss_pred             eec-cCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcc------eeEEeeeeeeccCcCCccccccccCCCCcCeEE
Q 001295          345 RTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE------RLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR  417 (1106)
Q Consensus       345 ~~~-~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~------~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~  417 (1106)
                      ..+ +|.+.|++++|+|  + +|++|+.||.|+|||+.+++      .+.                   .+.+|...|.+
T Consensus        10 ~~~~~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~-------------------~~~~h~~~v~~   67 (397)
T 1sq9_A           10 NAGKAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKDKSY-------------------SHFVHKSGLHH   67 (397)
T ss_dssp             EESSCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGGGEE-------------------EEECCTTCEEE
T ss_pred             hhhhhhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCCCcce-------------------EEecCCCcEEE
Confidence            344 4999999999999  5 59999999999999999877      232                   35789999999


Q ss_pred             EEEccC----C---CEEEEEeCCCeEEEEEccCCce-----eeeeeeeccc-----cCCeeEEEEc----CCCCceE-EE
Q 001295          418 VIWSPD----G---SLFGVAYSRHIVQIYSYHGGDE-----VRQHLEIDAH-----VGGVNDIAFS----HPNKQLC-VI  475 (1106)
Q Consensus       418 l~~spd----g---~~las~~~d~~v~iwd~~~~~~-----~~~~~~l~~h-----~~~V~~~~~s----~d~~~~~-l~  475 (1106)
                      ++|+|+    |   ++|++++.|+.|++||+.+++.     +.   .+.+|     ...|.+++|+    |+++  + |+
T Consensus        68 ~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~  142 (397)
T 1sq9_A           68 VDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFE---KLDLLDSDMKKHSFWALKWGASNDRLLS--HRLV  142 (397)
T ss_dssp             EEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEE---EECCSCTTGGGSCEEEEEEECCC----C--EEEE
T ss_pred             EEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccce---eecccccccCCCcEEEEEEeeccCCCCc--eEEE
Confidence            999999    9   9999999999999999998875     43   56777     6999999999    9999  7 99


Q ss_pred             EecCCCcEEEEeCCC------CceeE-----EEe-------ccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCc
Q 001295          476 TCGDDKTIKVWDATN------GAKQY-----IFE-------GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS  537 (1106)
Q Consensus       476 s~~~d~~i~iwd~~~------~~~~~-----~~~-------~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  537 (1106)
                      +++.|+.|++||+.+      ++.+.     .+.       .|...|.+++|++  ++ ++++++.||.|++||+++...
T Consensus       143 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~  219 (397)
T 1sq9_A          143 ATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRP  219 (397)
T ss_dssp             EEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEE
T ss_pred             EEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC--Cc-eEEEEeCCCcEEEEECCCCce
Confidence            999999999999998      77776     774       4889999999865  45 899999999999999998777


Q ss_pred             eeEeeC---C---CCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECC---CeEEEEECCCcceeEEEccCC
Q 001295          538 RVDYEA---P---GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD---FSIKFWDMDSVQLLTSIDADG  608 (1106)
Q Consensus       538 ~~~~~~---~---~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~  608 (1106)
                      ...+..   |   ...+.+++|+|++                     .+|++++.|   +.|++||+.+++.+..+....
T Consensus       220 ~~~~~~~~~h~~~~~~i~~i~~~~~~---------------------~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~  278 (397)
T 1sq9_A          220 LYNFESQHSMINNSNSIRSVKFSPQG---------------------SLLAIAHDSNSFGCITLYETEFGERIGSLSVPT  278 (397)
T ss_dssp             EEEEECCC---CCCCCEEEEEECSST---------------------TEEEEEEEETTEEEEEEEETTTCCEEEEECBC-
T ss_pred             eEEEeccccccccCCccceEEECCCC---------------------CEEEEEecCCCCceEEEEECCCCcccceeccCc
Confidence            666666   5   5555555555554                     589999999   999999999999999987610


Q ss_pred             -----------CCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhh
Q 001295          609 -----------GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF  649 (1106)
Q Consensus       609 -----------~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  649 (1106)
                                 +...|.+++|+|++++|++++.||.|++||+.++ +.+..+
T Consensus       279 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~  329 (397)
T 1sq9_A          279 HSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK-ERITTL  329 (397)
T ss_dssp             -------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEE
T ss_pred             ccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC-ceeEEE
Confidence                       2457999999999999999999999999999887 444433

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.5e-32  Score=310.96  Aligned_cols=324  Identities=12%  Similarity=0.133  Sum_probs=239.6

Q ss_pred             cCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEe
Q 001295          408 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD  487 (1106)
Q Consensus       408 ~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd  487 (1106)
                      +..|.++|.+++|+|++++||+++.|+.|++||+.+++ ......+.+|...|.+++|+|+++  +|++++.|+.|++||
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~vwd   80 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWT   80 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEE
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCC--EEEEEcCCCeEEEEE
Confidence            45689999999999999999999999999999999876 123336789999999999999999  899999999999999


Q ss_pred             CCCCceeEE--EeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCcee---E-eeCCCCeeEEEEEecCCCeEE
Q 001295          488 ATNGAKQYI--FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV---D-YEAPGRWCTTMAYSADGTRTY  561 (1106)
Q Consensus       488 ~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~-~~~~~~~v~~~~~s~~~~~~~  561 (1106)
                      +.+++....  +..|...|.+++|+++  +.+|++++.|+.|++||++......   . ...+...              
T Consensus        81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~--------------  144 (372)
T 1k8k_C           81 LKGRTWKPTLVILRINRAARCVRWAPN--EKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRST--------------  144 (372)
T ss_dssp             EETTEEEEEEECCCCSSCEEEEEECTT--SSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSC--------------
T ss_pred             CCCCeeeeeEEeecCCCceeEEEECCC--CCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCC--------------
Confidence            998876544  4679999999998754  5799999999999999998766421   1 1233344              


Q ss_pred             EeeeccceeEEEEcCCCCEEEEEECCCeEEEEEC------------------CCcceeEEEccCCCCCCcCeEEEccCCC
Q 001295          562 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM------------------DSVQLLTSIDADGGLPASPRIRFNKDGC  623 (1106)
Q Consensus       562 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~------------------~~~~~~~~~~~~~~~~~v~~v~~s~~~~  623 (1106)
                             +.+++|+|+++++++++.|+.|++||+                  ..++.+..+..+  ...|.+++|+|+++
T Consensus       145 -------i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~  215 (372)
T 1k8k_C          145 -------VLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS--CGWVHGVCFSANGS  215 (372)
T ss_dssp             -------EEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC--SSCEEEEEECSSSS
T ss_pred             -------eeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCC--CCeEEEEEECCCCC
Confidence                   445555555568999999999999995                  467777777755  44799999999999


Q ss_pred             EEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCcccc
Q 001295          624 LLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSL  703 (1106)
Q Consensus       624 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  703 (1106)
                      +|++++.||.|++||+.++ +.+..+.                                                     
T Consensus       216 ~l~~~~~d~~i~i~d~~~~-~~~~~~~-----------------------------------------------------  241 (372)
T 1k8k_C          216 RVAWVSHDSTVCLADADKK-MAVATLA-----------------------------------------------------  241 (372)
T ss_dssp             EEEEEETTTEEEEEEGGGT-TEEEEEE-----------------------------------------------------
T ss_pred             EEEEEeCCCEEEEEECCCC-ceeEEEc-----------------------------------------------------
Confidence            9999999999999999766 2221111                                                     


Q ss_pred             CCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCcc
Q 001295          704 ADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKA  783 (1106)
Q Consensus       704 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~  783 (1106)
                                                           .|...|.+++|+|++.+++++ .|+.+++|++...        
T Consensus       242 -------------------------------------~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~--------  275 (372)
T 1k8k_C          242 -------------------------------------SETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSA--------  275 (372)
T ss_dssp             -------------------------------------CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETT--------
T ss_pred             -------------------------------------cCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCc--------
Confidence                                                 155678999999999877666 8899999987520        


Q ss_pred             ccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEE---EcCCCce------eeeecCCCCCe
Q 001295          784 TASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLF---NMMTFKT------MATFMPPPPAA  854 (1106)
Q Consensus       784 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vw---d~~~~~~------~~~~~~~~~~v  854 (1106)
                                  .+.....      +.-..        ...-..+....+++|   +......      .....+|...|
T Consensus       276 ------------~~~~~~~------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  329 (372)
T 1k8k_C          276 ------------AGKLSFG------GRLDV--------PKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSV  329 (372)
T ss_dssp             ------------TTEEEEC------CCCCC--------C--------CHHHHHHHCCCCC---------CCCSSSSSSCE
T ss_pred             ------------CceEEEe------eccCc--------cccchhhhcchhhhhhhcccccccccCccccccccccccCCc
Confidence                        0211110      00000        000011123445666   4332221      22234899999


Q ss_pred             eEEEEecCCC---ceEEEeeCCCcEEEEEeecce
Q 001295          855 TFLAFHPQDN---NIIAIGMDDSSIQIYNVRVDE  885 (1106)
Q Consensus       855 ~~l~~s~~d~---~~la~g~~dg~v~iwd~~~~~  885 (1106)
                      ++++|++.++   .+|++|+.||.|++||+.+++
T Consensus       330 ~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~  363 (372)
T 1k8k_C          330 SQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE  363 (372)
T ss_dssp             EEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred             ceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence            9999775477   999999999999999998754

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.8e-34  Score=319.64  Aligned_cols=327  Identities=12%  Similarity=0.108  Sum_probs=244.8

Q ss_pred             cccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCC
Q 001295          455 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN  534 (1106)
Q Consensus       455 ~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  534 (1106)
                      .-...|.+++|+|||+  ++||++.|++|+  |...++.+   .+|...|.+++|+|++         .++.+.+|+   
T Consensus        13 ~~~~~v~sv~~SpDG~--~iASas~D~TV~--d~~~~~~l---~gh~~~v~~V~FsPdg---------~~~~~~~~~---   73 (588)
T 2j04_A           13 EFEDWKNNLTWARDGT--LYLTTFPDISIG--QPKYAKDI---NCNSKNLFHVKEFPLE---------FENKLDFEL---   73 (588)
T ss_dssp             CCSSSSCCEEECTTSC--EEEECSSSEEEE--EECCCSCC---SSBGGGTEEEEEECCC---------CCCTTTTSC---
T ss_pred             HhhccEEEEEECCCCC--EEEEEcCCceee--ccccccee---cCCCccEEEEEECCCC---------CcceEEEEe---
Confidence            3457899999999999  899999999999  76666554   7999999999987644         345444444   


Q ss_pred             CCceeEee-CCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCC---C
Q 001295          535 LGSRVDYE-APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG---L  610 (1106)
Q Consensus       535 ~~~~~~~~-~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---~  610 (1106)
                      .+....+. .+...|.+++|+|+|+                     +|++++.||.|++||...  ++..+. +..   .
T Consensus        74 ~~~~~~~~~~~~~~V~~vawSPdG~---------------------~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~  129 (588)
T 2j04_A           74 AQQNGLLNSQPVCYPRVCKPSPIDD---------------------WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSS  129 (588)
T ss_dssp             CCSSCSSTTSCSCCEEEEEECSSSS---------------------CEEEEETTSCEEEEETTE--EEEECC-CSSCSTT
T ss_pred             CCCceEeecCCCCcEEEEEECCCCC---------------------EEEEEeCCCcEEEEeCCc--eeeecc-CCCcccc
Confidence            33222222 2345566666666555                     799999999999999644  555555 321   1


Q ss_pred             CCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccc
Q 001295          611 PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASM  690 (1106)
Q Consensus       611 ~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  690 (1106)
                      ..+.+++|||||++|++|+.||+|++||+.++. ....                 .|                       
T Consensus       130 ~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~-l~~~-----------------~~-----------------------  168 (588)
T 2j04_A          130 RTYHCFEWNPIESSIVVGNEDGELQFFSIRKNS-ENTP-----------------EF-----------------------  168 (588)
T ss_dssp             TCEEEEEECSSSSCEEEEETTSEEEEEECCCCT-TTCC-----------------CC-----------------------
T ss_pred             ccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCc-cccc-----------------cc-----------------------
Confidence            258999999999999999999999999987651 0000                 00                       


Q ss_pred             cccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEe
Q 001295          691 VSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLW  770 (1106)
Q Consensus       691 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw  770 (1106)
                                                                                         +.       +..+
T Consensus       169 -------------------------------------------------------------------i~-------l~ti  174 (588)
T 2j04_A          169 -------------------------------------------------------------------YF-------ESSI  174 (588)
T ss_dssp             -------------------------------------------------------------------EE-------EEEE
T ss_pred             -------------------------------------------------------------------ee-------eeee
Confidence                                                                               00       0000


Q ss_pred             eccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCCce---eeee
Q 001295          771 KWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKT---MATF  847 (1106)
Q Consensus       771 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~---~~~~  847 (1106)
                      ..                              ..  .+|...|.+++|+||| +++++.|++|++||+.++..   .+++
T Consensus       175 ~~------------------------------~~--~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL  221 (588)
T 2j04_A          175 RL------------------------------SD--AGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMI  221 (588)
T ss_dssp             EC------------------------------SC--TTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEE
T ss_pred             ec------------------------------cc--ccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeee
Confidence            00                              00  1277889999999999 44444499999999988774   2456


Q ss_pred             -cCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEE--ecCCCEEEEEcCCCcEEEEeCC
Q 001295          848 -MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAF--SHALNVLVSSGADSQLCVWSSD  924 (1106)
Q Consensus       848 -~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~--s~d~~~l~s~s~Dg~i~vwd~~  924 (1106)
                       .+|...|.+++|+   +++||+++ +++|++||+.+++......+|.+.|.+++|  +||+..|+++++||+ ++|..+
T Consensus       222 ~~~h~~~V~svaFs---g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          222 QNASRRKITDLKIV---DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             ECCCSSCCCCEEEE---TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred             cccccCcEEEEEEE---CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence             4788899999999   37888887 699999999988874444489999999999  999999999999999 999876


Q ss_pred             CcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEE
Q 001295          925 GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYA 1004 (1106)
Q Consensus       925 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t 1004 (1106)
                      .                        ++|+||+..++.. |+++++|+..... ...+   .+...|++++|||||+.+|+
T Consensus       297 ~------------------------~~~spd~~l~a~~-d~~v~lW~~~g~~-l~~~---~~~~~I~~va~SPdG~~lA~  347 (588)
T 2j04_A          297 E------------------------LHVTADNIIAPYL-EKKFKKWSTIWNE-FNNY---ETTLVIHGISLSPDGYSIAI  347 (588)
T ss_dssp             S------------------------EEEECCCSSHHHH-HHHHHHTTTTTTS-SSSS---CCEEEEEEEEECTTSSEEEE
T ss_pred             c------------------------EEECCCceEEEEc-CCEEEEEECCCCc-eeee---ccceEEEEEEECCCCCEEEE
Confidence            2                        5589999887775 9999999986554 3332   23667999999999999999


Q ss_pred             EE
Q 001295         1005 CF 1006 (1106)
Q Consensus      1005 ~s 1006 (1106)
                      ++
T Consensus       348 ~~  349 (588)
T 2j04_A          348 VY  349 (588)
T ss_dssp             EE
T ss_pred             EE
Confidence            86

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.5e-32  Score=297.42  Aligned_cols=246  Identities=18%  Similarity=0.252  Sum_probs=208.1

Q ss_pred             ceeeecc-CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEE
Q 001295          342 TVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW  420 (1106)
Q Consensus       342 ~~~~~~~-h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~  420 (1106)
                      +....+. |.+.|++++| |++++ |++|+.||.|+|||+.+++....                   +..|...|.+++|
T Consensus         9 ~~~~~l~~h~~~v~~~~~-~~~~~-l~s~~~dg~v~vw~~~~~~~~~~-------------------~~~~~~~v~~~~~   67 (313)
T 3odt_A            9 QLSATLKGHDQDVRDVVA-VDDSK-VASVSRDGTVRLWSKDDQWLGTV-------------------VYTGQGFLNSVCY   67 (313)
T ss_dssp             EEEEEECCCSSCEEEEEE-EETTE-EEEEETTSEEEEEEESSSEEEEE-------------------EEECSSCEEEEEE
T ss_pred             HHHHHhhCCCCCcEEEEe-cCCCE-EEEEEcCCcEEEEECCCCEEEEE-------------------eecCCccEEEEEE
Confidence            4445554 9999999999 99995 99999999999999988776553                   5678999999999


Q ss_pred             ccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEecc
Q 001295          421 SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH  500 (1106)
Q Consensus       421 spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h  500 (1106)
                      +|++++|++++.|+.|++|++...........+.+|...|.+++|  ++.  ++++++.|+.|++||  .++.+..+..|
T Consensus        68 ~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~l~~~~~d~~i~~~d--~~~~~~~~~~~  141 (313)
T 3odt_A           68 DSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG--VVISGSWDKTAKVWK--EGSLVYNLQAH  141 (313)
T ss_dssp             ETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEE--TTEEEEEEECC
T ss_pred             CCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC--EEEEEeCCCCEEEEc--CCcEEEecccC
Confidence            999999999999999999999876544455578899999999999  456  799999999999999  78888999999


Q ss_pred             CCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeC-CCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCC
Q 001295          501 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA-PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN  579 (1106)
Q Consensus       501 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~  579 (1106)
                      ...+.+++|.+. ++.++++++.||.|++||.  ......+.. +...+.+++|++++.                     
T Consensus       142 ~~~v~~~~~~~~-~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~---------------------  197 (313)
T 3odt_A          142 NASVWDAKVVSF-SENKFLTASADKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGH---------------------  197 (313)
T ss_dssp             SSCEEEEEEEET-TTTEEEEEETTSCEEEEET--TEEEEEECSSCSSCEEEEEEEETTE---------------------
T ss_pred             CCceeEEEEccC-CCCEEEEEECCCCEEEEec--CceEEEEeccCcccEEEEEEcCCCe---------------------
Confidence            999999998763 3478999999999999993  334444444 556666666666654                     


Q ss_pred             EEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295          580 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       580 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                       +++++.|+.|++||+.+++.+..+..+.  ..|.+++|+|++ .|++++.||.|++||+.++
T Consensus       198 -~~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~  256 (313)
T 3odt_A          198 -FISCSNDGLIKLVDMHTGDVLRTYEGHE--SFVYCIKLLPNG-DIVSCGEDRTVRIWSKENG  256 (313)
T ss_dssp             -EEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEECTTS-CEEEEETTSEEEEECTTTC
T ss_pred             -EEEccCCCeEEEEECCchhhhhhhhcCC--ceEEEEEEecCC-CEEEEecCCEEEEEECCCC
Confidence             8999999999999999999999998664  479999999999 5889999999999998776

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=8.5e-33  Score=309.76  Aligned_cols=294  Identities=12%  Similarity=0.153  Sum_probs=216.1

Q ss_pred             cCCeeEEEEcCCCCceEEEEecCCC-------cEEEEeCCCCcee----------EEEeccCCCeEEEeccccCCceEEE
Q 001295          457 VGGVNDIAFSHPNKQLCVITCGDDK-------TIKVWDATNGAKQ----------YIFEGHEAPVYSVCPHHKENIQFIF  519 (1106)
Q Consensus       457 ~~~V~~~~~s~d~~~~~l~s~~~d~-------~i~iwd~~~~~~~----------~~~~~h~~~v~~~~~~~~~~~~~l~  519 (1106)
                      ..+|++++|+||++  +|++||.|.       .|++|++..+...          ..+.+|...|.++++.  .  ..++
T Consensus        14 g~PV~sv~fs~dg~--~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~--~~~~   87 (365)
T 4h5i_A           14 GYPAYGAKFLNNDT--LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--K--GIIL   87 (365)
T ss_dssp             SSCEEEEEEEETTE--EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--T--TEEE
T ss_pred             CCCEEEEEEeCCCc--EEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--C--CEEE
Confidence            45899999999999  899987543       5999998765321          2456777888877643  3  4677


Q ss_pred             EEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcc
Q 001295          520 STALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ  599 (1106)
Q Consensus       520 s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  599 (1106)
                      +|+.++..++|                                                    +++.|+.+++|++....
T Consensus        88 ~g~~~~~~~l~----------------------------------------------------s~~~d~~~r~~~~~~~~  115 (365)
T 4h5i_A           88 VGCNENSTKIT----------------------------------------------------QGKGNKHLRKFKYDKVN  115 (365)
T ss_dssp             EECCCCHHHHH----------------------------------------------------HTSCCCCEEEEEEETTT
T ss_pred             EEECCCccEEE----------------------------------------------------EecCCCcEEEEEecCCC
Confidence            76655544333                                                    23345556666654432


Q ss_pred             ee----EEEc---cCCCCCCcCeEEEccCCCEEEEEe--CCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCch
Q 001295          600 LL----TSID---ADGGLPASPRIRFNKDGCLLAVST--NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPI  670 (1106)
Q Consensus       600 ~~----~~~~---~~~~~~~v~~v~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  670 (1106)
                      ..    ....   .......+.+++|+|||+++++++  .|++|+|||+.++. ....+                     
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~-~~~~~---------------------  173 (365)
T 4h5i_A          116 DQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLT-EKFEI---------------------  173 (365)
T ss_dssp             TEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTE-EEEEE---------------------
T ss_pred             ceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCc-EEEEe---------------------
Confidence            11    1111   112233577899999999987655  68999999987762 11111                     


Q ss_pred             hhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEE
Q 001295          671 SAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLI  750 (1106)
Q Consensus       671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  750 (1106)
                                                                                            .|...|.+++
T Consensus       174 ----------------------------------------------------------------------~~~~~V~~v~  183 (365)
T 4h5i_A          174 ----------------------------------------------------------------------ETRGEVKDLH  183 (365)
T ss_dssp             ----------------------------------------------------------------------ECSSCCCEEE
T ss_pred             ----------------------------------------------------------------------CCCCceEEEE
Confidence                                                                                  1456789999


Q ss_pred             EcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCcc-ccccCCCCCCCCeeEEEEecCCCEEEEEe
Q 001295          751 FTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMM-TNDVTDSNPEEAVPCFALSKNDSYVMSAS  829 (1106)
Q Consensus       751 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~-~~~~~~~~~~~~v~~l~~s~~~~~l~~~s  829 (1106)
                      |+|+|+++++++.++.+.+|. .                      ++... ....  ..|...|.+++|+|+++++++++
T Consensus       184 fspdg~~l~s~s~~~~~~~~~-~----------------------~~~~~~~~~~--~~~~~~v~~v~fspdg~~l~~~s  238 (365)
T 4h5i_A          184 FSTDGKVVAYITGSSLEVIST-V----------------------TGSCIARKTD--FDKNWSLSKINFIADDTVLIAAS  238 (365)
T ss_dssp             ECTTSSEEEEECSSCEEEEET-T----------------------TCCEEEEECC--CCTTEEEEEEEEEETTEEEEEEE
T ss_pred             EccCCceEEeccceeEEEEEe-c----------------------cCcceeeeec--CCCCCCEEEEEEcCCCCEEEEEe
Confidence            999999998888665544443 2                      22211 1112  23788899999999999999998


Q ss_pred             -CC----eEEEEEcCCCce----eeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEe-cCcccCeeE
Q 001295          830 -GG----KISLFNMMTFKT----MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-KGHSKRITG  899 (1106)
Q Consensus       830 -dg----~i~vwd~~~~~~----~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l-~~h~~~V~~  899 (1106)
                       |+    .+++|++.....    ...+.+|...|++++|+| ++++||+|+.|++|+|||+.+++++..+ .+|...|++
T Consensus       239 ~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~  317 (365)
T 4h5i_A          239 LKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITE  317 (365)
T ss_dssp             ESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEE
T ss_pred             cCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC-CCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEE
Confidence             65    588899876543    345778999999999999 9999999999999999999999999875 799999999


Q ss_pred             EEEecCCCEEEEEcCCCcEEEEeCCCc
Q 001295          900 LAFSHALNVLVSSGADSQLCVWSSDGW  926 (1106)
Q Consensus       900 l~~s~d~~~l~s~s~Dg~i~vwd~~~~  926 (1106)
                      |+|||||++|||||.|++|+||++...
T Consensus       318 v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          318 VTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             EEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            999999999999999999999999753

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.4e-33  Score=319.96  Aligned_cols=257  Identities=14%  Similarity=0.119  Sum_probs=194.9

Q ss_pred             CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCc--ceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCE
Q 001295          349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR--ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  426 (1106)
Q Consensus       349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~--~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~  426 (1106)
                      |.+.|++++|+|+|+ +||+|+.||.|+|||+.++  +.+.                   .+.+|...|.+++|+|++++
T Consensus        10 ~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~~~s~~~~~   69 (377)
T 3dwl_C           10 LPKPSYEHAFNSQRT-EFVTTTATNQVELYEQDGNGWKHAR-------------------TFSDHDKIVTCVDWAPKSNR   69 (377)
T ss_dssp             CSSCCSCCEECSSSS-EEECCCSSSCBCEEEEETTEEEECC-------------------CBCCCSSCEEEEEECTTTCC
T ss_pred             CCCcEEEEEECCCCC-EEEEecCCCEEEEEEccCCceEEEE-------------------EEecCCceEEEEEEeCCCCE
Confidence            678999999999999 4999999999999999877  3332                   36899999999999999999


Q ss_pred             EEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCc---eeEEEec-cCC
Q 001295          427 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA---KQYIFEG-HEA  502 (1106)
Q Consensus       427 las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~-h~~  502 (1106)
                      |++++.|++|++||+.+++.......+.+|...|.+++|+|+++  +|++++.|+.|++||+++++   ....+.+ |..
T Consensus        70 l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~  147 (377)
T 3dwl_C           70 IVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS  147 (377)
T ss_dssp             EEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSSCCS
T ss_pred             EEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeecccCC
Confidence            99999999999999998873334446788999999999999999  79999999999999999887   4788888 999


Q ss_pred             CeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCC--CC--eeEEEEEecCCCeEEEeeeccceeEEEEcCCC
Q 001295          503 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP--GR--WCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK  578 (1106)
Q Consensus       503 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~--~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~  578 (1106)
                      .|.+++|++  ++.+|++++.|+.|++||+............  ..  ....+.      ..+  .+...+.+++|+|++
T Consensus       148 ~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~v~~~~~sp~~  217 (377)
T 3dwl_C          148 TILSLDWHP--NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVC------AEY--PSGGWVHAVGFSPSG  217 (377)
T ss_dssp             CEEEEEECT--TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEE------ECC--CCSSSEEEEEECTTS
T ss_pred             CeEEEEEcC--CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhh------hcc--cCCceEEEEEECCCC
Confidence            999999876  4579999999999999998643311100000  00  000000      000  223356677777777


Q ss_pred             CEEEEEECCCeEEEEECCCcce----eEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEcc
Q 001295          579 NRFLAAGDDFSIKFWDMDSVQL----LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS  640 (1106)
Q Consensus       579 ~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~  640 (1106)
                      ++|++++.|+.|++||+.+++.    +..+..+  ...|.+++|+|++++|++++.++.+ +|+..
T Consensus       218 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          218 NALAYAGHDSSVTIAYPSAPEQPPRALITVKLS--QLPLRSLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             SCEEEEETTTEEC-CEECSTTSCEEECCCEECS--SSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             CEEEEEeCCCcEEEEECCCCCCcceeeEeecCC--CCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence            7999999999999999999887    6666655  4479999999999999999876666 66554

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.5e-34  Score=317.61  Aligned_cols=314  Identities=8%  Similarity=0.008  Sum_probs=229.5

Q ss_pred             CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEE
Q 001295          349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  428 (1106)
Q Consensus       349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  428 (1106)
                      -...|.+++|||||+ ++|+++.|++|+  |...++.                      +.+|...|.+++|+|+|    
T Consensus        14 ~~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~~----------------------l~gh~~~v~~V~FsPdg----   64 (588)
T 2j04_A           14 FEDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAKD----------------------INCNSKNLFHVKEFPLE----   64 (588)
T ss_dssp             CSSSSCCEEECTTSC-EEEECSSSEEEE--EECCCSC----------------------CSSBGGGTEEEEEECCC----
T ss_pred             hhccEEEEEECCCCC-EEEEEcCCceee--cccccce----------------------ecCCCccEEEEEECCCC----
Confidence            358999999999999 599999999999  6544432                      47899999999999999    


Q ss_pred             EEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCC-----C
Q 001295          429 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA-----P  503 (1106)
Q Consensus       429 s~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~-----~  503 (1106)
                         .++.+.+|+......+    .+ .|...|.+++|||||+  .|++++.||.|++||.+.  ++..+. |..     .
T Consensus        65 ---~~~~~~~~~~~~~~~~----~~-~~~~~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~s  131 (588)
T 2j04_A           65 ---FENKLDFELAQQNGLL----NS-QPVCYPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRT  131 (588)
T ss_dssp             ---CCCTTTTSCCCSSCSS----TT-SCSCCEEEEEECSSSS--CEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTC
T ss_pred             ---CcceEEEEeCCCceEe----ec-CCCCcEEEEEECCCCC--EEEEEeCCCcEEEEeCCc--eeeecc-CCCcccccc
Confidence               4565555554432211    12 5688999999999999  799999999999999544  667777 766     4


Q ss_pred             eEEEeccccCCceEEEEEecCCeEEEEeCCCCCc-------eeEe----eCCCCeeEEEEEecCCCeEEEeeeccceeEE
Q 001295          504 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS-------RVDY----EAPGRWCTTMAYSADGTRTYQGFRKRSLGVV  572 (1106)
Q Consensus       504 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-------~~~~----~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~  572 (1106)
                      |.+++|+|  +|++|++|+.||+|++||+..+..       ...+    .+|..+|.+                     +
T Consensus       132 v~svafSP--DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~s---------------------V  188 (588)
T 2j04_A          132 YHCFEWNP--IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTH---------------------I  188 (588)
T ss_dssp             EEEEEECS--SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEE---------------------E
T ss_pred             EEEEEEcC--CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEE---------------------E
Confidence            99999865  558999999999999999987642       2333    333344444                     5


Q ss_pred             EEcCCCCEEEEEECCCeEEEEECCCcce---eEEEc-cCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhh
Q 001295          573 QFDTTKNRFLAAGDDFSIKFWDMDSVQL---LTSID-ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRT  648 (1106)
Q Consensus       573 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~-~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  648 (1106)
                      +|+|+|  +++++.|+.|++||+.+++.   ..++. +|  ...|.+++|+  |++|++++ +++|++||+.++......
T Consensus       189 awSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h--~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~  261 (588)
T 2j04_A          189 VWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNAS--RRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLK  261 (588)
T ss_dssp             EEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCC--SSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEE
T ss_pred             EEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccc--cCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEE
Confidence            555555  78889999999999988774   24553 33  4579999999  68999887 699999998776211110


Q ss_pred             hcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCC
Q 001295          649 FENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSE  728 (1106)
Q Consensus       649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~  728 (1106)
                                                                                                      
T Consensus       262 --------------------------------------------------------------------------------  261 (588)
T 2j04_A          262 --------------------------------------------------------------------------------  261 (588)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CccceecccCccccccceEEEEE--cCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCC
Q 001295          729 PNQCRSLRLPENLRATKISRLIF--TNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  806 (1106)
Q Consensus       729 ~~~~~~~~~~~~~~~~~i~~~~~--s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  806 (1106)
                                 .+|...|..++|  +|++..++++..+|+ ++|..+.                                
T Consensus       262 -----------~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~--------------------------------  297 (588)
T 2j04_A          262 -----------TGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDE--------------------------------  297 (588)
T ss_dssp             -----------CSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSS--------------------------------
T ss_pred             -----------cCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc--------------------------------
Confidence                       126778888999  999988999998999 9887431                                


Q ss_pred             CCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEee
Q 001295          807 SNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM  871 (1106)
Q Consensus       807 ~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~  871 (1106)
                               ++++||+..+++. |+++++|+..... +..+.+ ...|.+++||| ||+++|+++
T Consensus       298 ---------~~~spd~~l~a~~-d~~v~lW~~~g~~-l~~~~~-~~~I~~va~SP-dG~~lA~~~  349 (588)
T 2j04_A          298 ---------LHVTADNIIAPYL-EKKFKKWSTIWNE-FNNYET-TLVIHGISLSP-DGYSIAIVY  349 (588)
T ss_dssp             ---------EEEECCCSSHHHH-HHHHHHTTTTTTS-SSSSCC-EEEEEEEEECT-TSSEEEEEE
T ss_pred             ---------EEECCCceEEEEc-CCEEEEEECCCCc-eeeecc-ceEEEEEEECC-CCCEEEEEE
Confidence                     4466666665554 6666666654333 333433 44566677776 666666654

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=3.1e-32  Score=305.19  Aligned_cols=203  Identities=15%  Similarity=0.120  Sum_probs=169.3

Q ss_pred             CCCCeeEEEEecCCCEEEEEe---CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecce
Q 001295          809 PEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE  885 (1106)
Q Consensus       809 ~~~~v~~l~~s~~~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~  885 (1106)
                      +...+.+++|||||+++++++   |++|+|||+.+++.+..+. |...|.+++|+| |+++|++++. +.+++|+..+++
T Consensus       132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fsp-dg~~l~s~s~-~~~~~~~~~~~~  208 (365)
T 4h5i_A          132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFST-DGKVVAYITG-SSLEVISTVTGS  208 (365)
T ss_dssp             TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSSEEEEECS-SCEEEEETTTCC
T ss_pred             cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEcc-CCceEEeccc-eeEEEEEeccCc
Confidence            556688999999999987654   6999999999999988886 777899999999 9999999985 567777777766


Q ss_pred             EEE--EecCcccCeeEEEEecCCCEEEEEcCCC----cEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEE
Q 001295          886 VKS--KLKGHSKRITGLAFSHALNVLVSSGADS----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF  959 (1106)
Q Consensus       886 ~~~--~l~~h~~~V~~l~~s~d~~~l~s~s~Dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l  959 (1106)
                      .+.  ...+|...|.+++|+||++++++++.|+    .+++|++......... .....+|.   ..|.+++|+|||++|
T Consensus       209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~---~~V~~~~~Spdg~~l  284 (365)
T 4h5i_A          209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLR-SKQVTNRF---KGITSMDVDMKGELA  284 (365)
T ss_dssp             EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEE-EEEEESSC---SCEEEEEECTTSCEE
T ss_pred             ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceeccee-eeeecCCC---CCeEeEEECCCCCce
Confidence            543  4467999999999999999999999887    6888998765432211 22233443   378999999999999


Q ss_pred             EE-EeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCc
Q 001295          960 LV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1019 (1106)
Q Consensus       960 ~~-~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~ 1019 (1106)
                      |+ +.|+.|+|||+.+++++..+. .+|..+|++++|||||++||+||.|++|+|||+...
T Consensus       285 asgs~D~~V~iwd~~~~~~~~~~~-~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          285 VLASNDNSIALVKLKDLSMSKIFK-QAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEET-TSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             EEEcCCCEEEEEECCCCcEEEEec-CcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            99 589999999999999988753 389999999999999999999999999999999643

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.3e-31  Score=305.82  Aligned_cols=295  Identities=16%  Similarity=0.217  Sum_probs=240.4

Q ss_pred             CcceeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEE
Q 001295          340 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI  419 (1106)
Q Consensus       340 ~~~~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~  419 (1106)
                      |..+...-+|.+.+.+.++++++.. +++++.||.|+|||+.+++....                  ....|...|.+++
T Consensus        81 p~~~~~~~~~~~~~~~~~~~~s~~~-l~~~~~d~~v~lw~~~~~~~~~~------------------~~~~~~~~v~~v~  141 (401)
T 4aez_A           81 PERVLDAPGIIDDYYLNLLDWSNLN-VVAVALERNVYVWNADSGSVSAL------------------AETDESTYVASVK  141 (401)
T ss_dssp             CSEEEECTTCCCCTTCBCEEECTTS-EEEEEETTEEEEEETTTCCEEEE------------------EECCTTCCEEEEE
T ss_pred             cceeeeCCCCcCCceEEEEeecCCC-EEEEECCCeEEEeeCCCCcEeEe------------------eecCCCCCEEEEE
Confidence            4444444457666555444444554 66778899999999999887653                  1244889999999


Q ss_pred             EccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCC-CCceeEEEe
Q 001295          420 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQYIFE  498 (1106)
Q Consensus       420 ~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~  498 (1106)
                      |+|++++|++|+.||.|++||+.+++.+.   .+.+|...|.+++|+  +.  ++++|+.|+.|++||++ .+..+..+.
T Consensus       142 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~  214 (401)
T 4aez_A          142 WSHDGSFLSVGLGNGLVDIYDVESQTKLR---TMAGHQARVGCLSWN--RH--VLSSGSRSGAIHHHDVRIANHQIGTLQ  214 (401)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred             ECCCCCEEEEECCCCeEEEEECcCCeEEE---EecCCCCceEEEEEC--CC--EEEEEcCCCCEEEEecccCcceeeEEc
Confidence            99999999999999999999999987665   577999999999994  45  79999999999999999 567788999


Q ss_pred             ccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCC
Q 001295          499 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK  578 (1106)
Q Consensus       499 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~  578 (1106)
                      +|...|.+++|++  ++.+|++|+.||.|++||+++......+..+...|.+++|+|++.                    
T Consensus       215 ~~~~~v~~~~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~--------------------  272 (401)
T 4aez_A          215 GHSSEVCGLAWRS--DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQS--------------------  272 (401)
T ss_dssp             CCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTST--------------------
T ss_pred             CCCCCeeEEEEcC--CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCC--------------------
Confidence            9999999999976  557999999999999999999888777877888888888877664                    


Q ss_pred             CEEEEEE--CCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEE--eCCCcEEEEEccCCchhhhhhccccc
Q 001295          579 NRFLAAG--DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS--TNDNGIKILATSDGIRLLRTFENLAY  654 (1106)
Q Consensus       579 ~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~  654 (1106)
                      ..+++++  .|+.|++||+.+++.+..+..+   ..+.+++|+|++++++++  +.||.|++|++.++. ...       
T Consensus       273 ~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~-~~~-------  341 (401)
T 4aez_A          273 NLLATGGGTMDKQIHFWNAATGARVNTVDAG---SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG-LTK-------  341 (401)
T ss_dssp             TEEEEECCTTTCEEEEEETTTCCEEEEEECS---SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTE-EEE-------
T ss_pred             CEEEEecCCCCCEEEEEECCCCCEEEEEeCC---CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcc-cee-------
Confidence            2455554  7999999999999999888643   359999999999999995  489999999987651 110       


Q ss_pred             ccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCcccee
Q 001295          655 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS  734 (1106)
Q Consensus       655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~  734 (1106)
                                                                                       ++.+           
T Consensus       342 -----------------------------------------------------------------~~~~-----------  345 (401)
T 4aez_A          342 -----------------------------------------------------------------QVDI-----------  345 (401)
T ss_dssp             -----------------------------------------------------------------EEEE-----------
T ss_pred             -----------------------------------------------------------------EEEe-----------
Confidence                                                                             0111           


Q ss_pred             cccCccccccceEEEEEcCCCceEEEeecCceEEEeeccc
Q 001295          735 LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQR  774 (1106)
Q Consensus       735 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~  774 (1106)
                           .+|...|.+++|+|++++|++++.||.|++|++..
T Consensus       346 -----~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~  380 (401)
T 4aez_A          346 -----PAHDTRVLYSALSPDGRILSTAASDENLKFWRVYD  380 (401)
T ss_dssp             -----ECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred             -----cCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence                 12778899999999999999999999999999864

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-31  Score=293.55  Aligned_cols=285  Identities=13%  Similarity=0.176  Sum_probs=240.5

Q ss_pred             eeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEE
Q 001295          449 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIK  528 (1106)
Q Consensus       449 ~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~  528 (1106)
                      ....+.+|.+.|.+++| ++++  +|++|+.||.|++||+.+++....+..|...|.+++|++  ++.+|++++.||.|+
T Consensus        10 ~~~~l~~h~~~v~~~~~-~~~~--~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~   84 (313)
T 3odt_A           10 LSATLKGHDQDVRDVVA-VDDS--KVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDS--EKELLLFGGKDTMIN   84 (313)
T ss_dssp             EEEEECCCSSCEEEEEE-EETT--EEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEET--TTTEEEEEETTSCEE
T ss_pred             HHHHhhCCCCCcEEEEe-cCCC--EEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECC--CCCEEEEecCCCeEE
Confidence            34478999999999999 8888  799999999999999999999999999999999999876  457999999999999


Q ss_pred             EEeCCCC---CceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEc
Q 001295          529 AWLYDNL---GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID  605 (1106)
Q Consensus       529 iwd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  605 (1106)
                      +|++...   .....+..+...+.+++|  +                     ++++++++.|+.|++||  .++.+..+.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~---------------------~~~l~~~~~d~~i~~~d--~~~~~~~~~  139 (313)
T 3odt_A           85 GVPLFATSGEDPLYTLIGHQGNVCSLSF--Q---------------------DGVVISGSWDKTAKVWK--EGSLVYNLQ  139 (313)
T ss_dssp             EEETTCCTTSCC-CEECCCSSCEEEEEE--E---------------------TTEEEEEETTSEEEEEE--TTEEEEEEE
T ss_pred             EEEeeecCCCCcccchhhcccCEEEEEe--c---------------------CCEEEEEeCCCCEEEEc--CCcEEEecc
Confidence            9998764   334456666666666666  2                     23699999999999999  667777777


Q ss_pred             cCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccc
Q 001295          606 ADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLA  684 (1106)
Q Consensus       606 ~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  684 (1106)
                      .+  ...+.+++|.| ++.++++++.||.|++||....   ..                                     
T Consensus       140 ~~--~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~-------------------------------------  177 (313)
T 3odt_A          140 AH--NASVWDAKVVSFSENKFLTASADKTIKLWQNDKV---IK-------------------------------------  177 (313)
T ss_dssp             CC--SSCEEEEEEEETTTTEEEEEETTSCEEEEETTEE---EE-------------------------------------
T ss_pred             cC--CCceeEEEEccCCCCEEEEEECCCCEEEEecCce---EE-------------------------------------
Confidence            65  44799999998 9999999999999999982111   00                                     


Q ss_pred             cccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecC
Q 001295          685 DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN  764 (1106)
Q Consensus       685 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  764 (1106)
                                                                                                      
T Consensus       178 --------------------------------------------------------------------------------  177 (313)
T 3odt_A          178 --------------------------------------------------------------------------------  177 (313)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCce
Q 001295          765 AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT  843 (1106)
Q Consensus       765 g~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~  843 (1106)
                          .+.                                   ..|...+.+++|+|+++ +++++ ||.|++||+.+++.
T Consensus       178 ----~~~-----------------------------------~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~  217 (313)
T 3odt_A          178 ----TFS-----------------------------------GIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDV  217 (313)
T ss_dssp             ----EEC-----------------------------------SSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCE
T ss_pred             ----EEe-----------------------------------ccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhh
Confidence                000                                   01566788899999988 66666 89999999999999


Q ss_pred             eeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeC
Q 001295          844 MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS  923 (1106)
Q Consensus       844 ~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~  923 (1106)
                      +..+.+|...|++++|+| ++ .|++++.||.|++||+.+++++..+..|...|++++|+|+++ +++++.||.|++|++
T Consensus       218 ~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~  294 (313)
T 3odt_A          218 LRTYEGHESFVYCIKLLP-NG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQ  294 (313)
T ss_dssp             EEEEECCSSCEEEEEECT-TS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEES
T ss_pred             hhhhhcCCceEEEEEEec-CC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeC
Confidence            999999999999999999 77 588999999999999999999999999999999999999998 667999999999999


Q ss_pred             CCccc
Q 001295          924 DGWEK  928 (1106)
Q Consensus       924 ~~~~~  928 (1106)
                      .+++.
T Consensus       295 ~~~~~  299 (313)
T 3odt_A          295 EKSRW  299 (313)
T ss_dssp             CGGGC
T ss_pred             CCCce
Confidence            98654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=7.4e-33  Score=313.94  Aligned_cols=245  Identities=14%  Similarity=0.154  Sum_probs=195.3

Q ss_pred             cccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecC
Q 001295          742 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  821 (1106)
Q Consensus       742 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~  821 (1106)
                      +...|.+++|+|++++|++++.|+.|++|++.....                    .. ...+.  +|...|.+++|+|+
T Consensus        10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~--------------------~~-~~~~~--~h~~~v~~~~~s~~   66 (377)
T 3dwl_C           10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW--------------------KH-ARTFS--DHDKIVTCVDWAPK   66 (377)
T ss_dssp             CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE--------------------EE-CCCBC--CCSSCEEEEEECTT
T ss_pred             CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce--------------------EE-EEEEe--cCCceEEEEEEeCC
Confidence            557899999999999999999999999999863210                    11 11122  38999999999999


Q ss_pred             CCEEEEEe-CCeEEEEEcCCCc---eeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecce---EEEEecC-c
Q 001295          822 DSYVMSAS-GGKISLFNMMTFK---TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE---VKSKLKG-H  893 (1106)
Q Consensus       822 ~~~l~~~s-dg~i~vwd~~~~~---~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~---~~~~l~~-h  893 (1106)
                      +++|++++ |++|++||+.+++   ....+.+|...|.+++|+| ++++|++|+.||.|++||+.+++   +...+.+ |
T Consensus        67 ~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h  145 (377)
T 3dwl_C           67 SNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPL  145 (377)
T ss_dssp             TCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSC
T ss_pred             CCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeeccc
Confidence            99999999 8999999999876   6677888999999999999 89999999999999999999877   4778888 9


Q ss_pred             ccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccc-------------cceeecccCCCCCCCCCCceEEEcCCCcEEE
Q 001295          894 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQ-------------KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL  960 (1106)
Q Consensus       894 ~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~-------------~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~  960 (1106)
                      ...|++++|+|++++|++++.|++|++||+...+..             ...++... +|.   ..|.+++|+|+|++|+
T Consensus       146 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~v~~~~~sp~~~~l~  221 (377)
T 3dwl_C          146 RSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSG---GWVHAVGFSPSGNALA  221 (377)
T ss_dssp             CSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCS---SSEEEEEECTTSSCEE
T ss_pred             CCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCC---ceEEEEEECCCCCEEE
Confidence            999999999999999999999999999998643211             12233333 443   4799999999999999


Q ss_pred             E-EeCCeEEEEecCCceE----eeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcC
Q 001295          961 V-VHETQLAIFETTKLEC----VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAA 1017 (1106)
Q Consensus       961 ~-~~d~~v~i~d~~~~~~----~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~ 1017 (1106)
                      + +.|+.|++||+.++++    +..+.  +|..+|.+++|+||+++|++|+.|+.+ +|+..
T Consensus       222 ~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          222 YAGHDSSVTIAYPSAPEQPPRALITVK--LSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             EEETTTEEC-CEECSTTSCEEECCCEE--CSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             EEeCCCcEEEEECCCCCCcceeeEeec--CCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence            8 5899999999999887    55554  789999999999999999999876666 66654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=4e-31  Score=303.68  Aligned_cols=299  Identities=16%  Similarity=0.236  Sum_probs=227.4

Q ss_pred             CeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCce
Q 001295          414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK  493 (1106)
Q Consensus       414 ~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~  493 (1106)
                      .++.|+||++ ++||+|. |++|+|||+.+|+..+. ..+.+|...|++|+|+|+|+  +|++|+.|++|+|||+.++++
T Consensus       107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~-~~~~~~~~~V~sv~fspdg~--~lasgs~Dg~v~iWd~~~~~~  181 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQL-LQMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKR  181 (420)
T ss_dssp             TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEE-EECCSTTCCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEE
T ss_pred             cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEE-EEecCCCCcEEEEEECCCCC--EEEEEECCCeEEEEEcCCCcE
Confidence            5678999986 4777765 99999999999986643 35668889999999999999  899999999999999999999


Q ss_pred             eEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCce-eEeeCCCCeeEEEEEecCCCeEEEeeeccceeEE
Q 001295          494 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR-VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV  572 (1106)
Q Consensus       494 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~  572 (1106)
                      +..+.+|...+.++.++    +.+|++|+.|+.+++||....... ..+..|...+..+.+++++               
T Consensus       182 ~~~~~~h~~~v~~~s~~----~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g---------------  242 (420)
T 4gga_A          182 LRNMTSHSARVGSLSWN----SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG---------------  242 (420)
T ss_dssp             EEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS---------------
T ss_pred             EEEEeCCCCceEEEeeC----CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCC---------------
Confidence            99999999999998863    258999999999999998865443 3555666655555555554               


Q ss_pred             EEcCCCCEEEEEECCCeEEEEECCCcce----eEEEccCCCCCCcCeEEEccCC-CEEEEE--eCCCcEEEEEccCCchh
Q 001295          573 QFDTTKNRFLAAGDDFSIKFWDMDSVQL----LTSIDADGGLPASPRIRFNKDG-CLLAVS--TNDNGIKILATSDGIRL  645 (1106)
Q Consensus       573 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~v~~v~~s~~~-~~l~~~--~~dg~i~iwd~~~~~~~  645 (1106)
                            .++++++.|+.|++|+..+++.    +.....+  ...|.+++|+|++ .+++++  +.|+.|++||+.++. .
T Consensus       243 ------~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~--~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~-~  313 (420)
T 4gga_A          243 ------RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH--QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA-C  313 (420)
T ss_dssp             ------SEEEEEETTSCEEEEESSCCSSCSCCSEEECCC--SSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTE-E
T ss_pred             ------CeeeeeeccccceEEeeccccccceeeeeeccc--CCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccc-c
Confidence                  5899999999999999987653    3444433  4579999999954 555554  468999999886651 1


Q ss_pred             hhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCC
Q 001295          646 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE  725 (1106)
Q Consensus       646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~  725 (1106)
                      ...+                                                                            
T Consensus       314 ~~~~----------------------------------------------------------------------------  317 (420)
T 4gga_A          314 LSAV----------------------------------------------------------------------------  317 (420)
T ss_dssp             EEEE----------------------------------------------------------------------------
T ss_pred             ceee----------------------------------------------------------------------------
Confidence            0000                                                                            


Q ss_pred             CCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccC
Q 001295          726 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT  805 (1106)
Q Consensus       726 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  805 (1106)
                                                                                                      
T Consensus       318 --------------------------------------------------------------------------------  317 (420)
T 4gga_A          318 --------------------------------------------------------------------------------  317 (420)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCeeEEEEecCCCEEEEEe---CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEee
Q 001295          806 DSNPEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR  882 (1106)
Q Consensus       806 ~~~~~~~v~~l~~s~~~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~  882 (1106)
                        .+...+.++.|+++++.+++++   |+.|+|||+.+++++.++.+|...|++++|+| ++++||+|+.||+|+|||+.
T Consensus       318 --~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~sp-dg~~l~S~s~D~tvriWdv~  394 (420)
T 4gga_A          318 --DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGATVASAAADETLRLWRCF  394 (420)
T ss_dssp             --ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEEEEETTTEEEEECCS
T ss_pred             --ccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEECC
Confidence              0234567788888888887664   68999999999999999999999999999999 99999999999999999998


Q ss_pred             cceEEEEecCcccCeeEEEEec
Q 001295          883 VDEVKSKLKGHSKRITGLAFSH  904 (1106)
Q Consensus       883 ~~~~~~~l~~h~~~V~~l~~s~  904 (1106)
                      ..........+...+....|..
T Consensus       395 ~~~~~~~~~~~~~~~~~~s~~~  416 (420)
T 4gga_A          395 ELDPARRREREKASAAKSSLIH  416 (420)
T ss_dssp             CSSCC-----------------
T ss_pred             CCCccchhhhccCCccccccCC
Confidence            7766666665655554444433

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=8.8e-31  Score=289.10  Aligned_cols=283  Identities=18%  Similarity=0.265  Sum_probs=218.3

Q ss_pred             CeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCce
Q 001295          414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK  493 (1106)
Q Consensus       414 ~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~  493 (1106)
                      ..++|+||+++ +||+| .|++|+|||+.+++.++.+ .+.+|...|++++|+|+++  +|++|+.|++|++||++++++
T Consensus        27 y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~-~~~~~~~~V~~v~~~~~~~--~l~sgs~Dg~v~iw~~~~~~~  101 (318)
T 4ggc_A           27 YLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLL-QMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKR  101 (318)
T ss_dssp             TCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEE-ECCSTTCCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEE
T ss_pred             cceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEE-EecCCCCeEEEEEECCCCC--EEEEEECCCcEEEeecCCcee
Confidence            35789999986 77766 4999999999999876533 4668899999999999999  899999999999999999999


Q ss_pred             eEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEE
Q 001295          494 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  573 (1106)
Q Consensus       494 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~  573 (1106)
                      +..+.+|...+.++.+  .+  ..+++++.++.+++|+.....                                     
T Consensus       102 ~~~~~~h~~~~~~~~~--~~--~~l~s~~~~~~~~~~~~~~~~-------------------------------------  140 (318)
T 4ggc_A          102 LRNMTSHSARVGSLSW--NS--YILSSGSRSGHIHHHDVRVAE-------------------------------------  140 (318)
T ss_dssp             EEEEECCSSCEEEEEE--ET--TEEEEEETTSEEEEEETTSSS-------------------------------------
T ss_pred             EEEecCccceEEEeec--CC--CEEEEEecCCceEeeecCCCc-------------------------------------
Confidence            9999999988877664  22  467777777777777654311                                     


Q ss_pred             EcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccc
Q 001295          574 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA  653 (1106)
Q Consensus       574 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  653 (1106)
                                               ..+..+..|  ...+..+.++++++++++++.||.|++||+.++.........  
T Consensus       141 -------------------------~~~~~~~~~--~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--  191 (318)
T 4ggc_A          141 -------------------------HHVATLSGH--SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT--  191 (318)
T ss_dssp             -------------------------CEEEEEECC--SSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEE--
T ss_pred             -------------------------eeEEEEcCc--cCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceee--
Confidence                                     122233333  346788999999999999999999999998766211000000  


Q ss_pred             cccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccce
Q 001295          654 YDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCR  733 (1106)
Q Consensus       654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~  733 (1106)
                                                                                                      
T Consensus       192 --------------------------------------------------------------------------------  191 (318)
T 4ggc_A          192 --------------------------------------------------------------------------------  191 (318)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCe
Q 001295          734 SLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAV  813 (1106)
Q Consensus       734 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v  813 (1106)
                                                                                            .  ..+...|
T Consensus       192 ----------------------------------------------------------------------~--~~~~~~v  199 (318)
T 4ggc_A          192 ----------------------------------------------------------------------F--TQHQGAV  199 (318)
T ss_dssp             ----------------------------------------------------------------------E--CCCCSCE
T ss_pred             ----------------------------------------------------------------------e--cccCCce
Confidence                                                                                  0  0134455


Q ss_pred             eEEEEecCCCEEE---EEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEe--eCCCcEEEEEeecceEE
Q 001295          814 PCFALSKNDSYVM---SAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIG--MDDSSIQIYNVRVDEVK  887 (1106)
Q Consensus       814 ~~l~~s~~~~~l~---~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g--~~dg~v~iwd~~~~~~~  887 (1106)
                      .+++++|++..++   +++ +++|++||........... +...+..+.|++ ++..++++  +.||.|+|||+.+++++
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~~~~~sg~~d~~i~iwd~~~~~~~  277 (318)
T 4ggc_A          200 KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSP-HYKELISGHGFAQNQLVIWKYPTMAKV  277 (318)
T ss_dssp             EEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEET-TTTEEEEEECTTTCCEEEEETTTCCEE
T ss_pred             EEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecc-cccceEEEEEcCCCEEEEEECCCCcEE
Confidence            5566666544322   333 6889999998877766554 667799999999 66666554  48999999999999999


Q ss_pred             EEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCC
Q 001295          888 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG  925 (1106)
Q Consensus       888 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~  925 (1106)
                      .++.+|.+.|++|+|+|||++||||+.||+|+|||+..
T Consensus       278 ~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~  315 (318)
T 4ggc_A          278 AELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE  315 (318)
T ss_dssp             EEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred             EEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence            99999999999999999999999999999999999876

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.1e-30  Score=299.88  Aligned_cols=280  Identities=16%  Similarity=0.239  Sum_probs=232.4

Q ss_pred             CCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEE
Q 001295          351 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA  430 (1106)
Q Consensus       351 ~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~  430 (1106)
                      --++.|+||+++  +||+|. |++|+|||+.+|+.....                 .+.+|...|++|+|+|||++||+|
T Consensus       106 ~y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~~-----------------~~~~~~~~V~sv~fspdg~~lasg  165 (420)
T 4gga_A          106 YYLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLL-----------------QMEQPGEYISSVAWIKEGNYLAVG  165 (420)
T ss_dssp             TTCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEE-----------------ECCSTTCCEEEEEECTTSSEEEEE
T ss_pred             ccceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEE-----------------EecCCCCcEEEEEECCCCCEEEEE
Confidence            357899999865  688876 899999999999876531                 146888999999999999999999


Q ss_pred             eCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCC-CceeEEEeccCCCeEEEec
Q 001295          431 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-GAKQYIFEGHEAPVYSVCP  509 (1106)
Q Consensus       431 ~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~h~~~v~~~~~  509 (1106)
                      +.||+|+|||+.+++.+.   .+.+|...|.+++|+  +.  ++++|+.|+.+++||... ...+..+.+|...+..+.+
T Consensus       166 s~Dg~v~iWd~~~~~~~~---~~~~h~~~v~~~s~~--~~--~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~  238 (420)
T 4gga_A          166 TSSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRW  238 (420)
T ss_dssp             ETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEE
T ss_pred             ECCCeEEEEEcCCCcEEE---EEeCCCCceEEEeeC--CC--EEEEEeCCCceeEeeecccceeeEEecccccceeeeee
Confidence            999999999999988765   678999999998885  45  899999999999999886 4556789999999999998


Q ss_pred             cccCCceEEEEEecCCeEEEEeCCCCCc----eeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEE--
Q 001295          510 HHKENIQFIFSTALDGKIKAWLYDNLGS----RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA--  583 (1106)
Q Consensus       510 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--  583 (1106)
                      .+  ++.++++++.|+.+++|+..+...    ......+...|.+++|+|++.                    ..+++  
T Consensus       239 ~~--~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~--------------------~~la~~~  296 (420)
T 4gga_A          239 AP--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQS--------------------NVLATGG  296 (420)
T ss_dssp             CT--TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCT--------------------TEEEEEE
T ss_pred             cC--CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcc--------------------cEEEEEe
Confidence            65  457999999999999999987653    334556666777777777665                    23444  


Q ss_pred             EECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEe--CCCcEEEEEccCCchhhhhhcccccccccCCC
Q 001295          584 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST--NDNGIKILATSDGIRLLRTFENLAYDASRTSE  661 (1106)
Q Consensus       584 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  661 (1106)
                      |+.|+.|++||+.+++++..+..+.   .+.++.|+++++.+++++  .|+.|+|||+.++ +.+..+            
T Consensus       297 gs~D~~I~iwd~~t~~~~~~~~~~~---~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~-~~v~~l------------  360 (420)
T 4gga_A          297 GTSDRHIRIWNVCSGACLSAVDAHS---QVCSILWSPHYKELISGHGFAQNQLVIWKYPTM-AKVAEL------------  360 (420)
T ss_dssp             CTTTCEEEEEETTTTEEEEEEECSS---CEEEEEEETTTTEEEEEECTTTCCEEEEETTTC-CEEEEE------------
T ss_pred             ecCCCEEEEEeCCccccceeecccc---ceeeeeecCCCCeEEEEEecCCCEEEEEECCCC-cEEEEE------------
Confidence            4579999999999999999887654   488999999999998876  6899999998776 222222            


Q ss_pred             CCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccc
Q 001295          662 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL  741 (1106)
Q Consensus       662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~  741 (1106)
                                                                                                    .+
T Consensus       361 ------------------------------------------------------------------------------~g  362 (420)
T 4gga_A          361 ------------------------------------------------------------------------------KG  362 (420)
T ss_dssp             ------------------------------------------------------------------------------CC
T ss_pred             ------------------------------------------------------------------------------cC
Confidence                                                                                          23


Q ss_pred             cccceEEEEEcCCCceEEEeecCceEEEeecc
Q 001295          742 RATKISRLIFTNSGNAILALASNAIHLLWKWQ  773 (1106)
Q Consensus       742 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  773 (1106)
                      |...|.+++|+|+|++|++++.|++|++|++.
T Consensus       363 H~~~V~~l~~spdg~~l~S~s~D~tvriWdv~  394 (420)
T 4gga_A          363 HTSRVLSLTMSPDGATVASAAADETLRLWRCF  394 (420)
T ss_dssp             CSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred             CCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence            78899999999999999999999999999875

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=3.2e-31  Score=288.38  Aligned_cols=248  Identities=11%  Similarity=0.072  Sum_probs=203.5

Q ss_pred             CCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCC--CceeeeecCCCCCeeEEEEecC-CCceEEEeeCCCcEEEEEeec
Q 001295          808 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT--FKTMATFMPPPPAATFLAFHPQ-DNNIIAIGMDDSSIQIYNVRV  883 (1106)
Q Consensus       808 ~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~--~~~~~~~~~~~~~v~~l~~s~~-d~~~la~g~~dg~v~iwd~~~  883 (1106)
                      +|...|.+++|+|+|++|++|+ |++|+|||+.+  .+.+.++.+|...|.+++|+++ ++++||+|+.||+|+|||+.+
T Consensus         7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~   86 (297)
T 2pm7_B            7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN   86 (297)
T ss_dssp             SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSS
T ss_pred             CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCC
Confidence            3999999999999999999999 99999999974  4677889999999999999862 388999999999999999988


Q ss_pred             ce--EEEEecCcccCeeEEEEecC--CCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCC----
Q 001295          884 DE--VKSKLKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD----  955 (1106)
Q Consensus       884 ~~--~~~~l~~h~~~V~~l~~s~d--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~d----  955 (1106)
                      ++  .+..+.+|...|.+++|+|+  +.+|++++.|++|++||+.+......   ....+|.   ..+.+++|+|+    
T Consensus        87 ~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~---~~~~~h~---~~v~~~~~~p~~~~~  160 (297)
T 2pm7_B           87 GRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSP---IIIDAHA---IGVNSASWAPATIEE  160 (297)
T ss_dssp             SCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCC---EEEECCS---SCEEEEEECCCC---
T ss_pred             CceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceee---eeeeccc---CccceEeecCCcccc
Confidence            74  56778899999999999998  89999999999999999987532211   2233444   37899999997    


Q ss_pred             ---------CcEEEE-EeCCeEEEEecCCce----EeeecccCCCCCCeeEEEECCCC---CEEEEEEcCCeEEEEEcCC
Q 001295          956 ---------QIHFLV-VHETQLAIFETTKLE----CVKQWVPRESSAPITHATFSCDS---QLVYACFLDATVCVFSAAN 1018 (1106)
Q Consensus       956 ---------g~~l~~-~~d~~v~i~d~~~~~----~~~~~~~~~h~~~v~~l~~s~d~---~~l~t~s~Dg~i~vwd~~~ 1018 (1106)
                               +++|++ +.|+.|++||+.+++    ....+  .+|...|.+++|+|++   .+||+++.|++|+|||+.+
T Consensus       161 ~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l--~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~  238 (297)
T 2pm7_B          161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL--EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN  238 (297)
T ss_dssp             ---------CCEEEEEETTSCEEEEEEETTTTEEEEEEEE--CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred             cccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEe--cCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence                     568888 589999999998765    44444  4899999999999995   8999999999999999987


Q ss_pred             cee--EEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecC
Q 001295         1019 LKL--RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1071 (1106)
Q Consensus      1019 ~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~ 1071 (1106)
                      +..  .....    ...+| ...+.  .++|+| ++++|++++.||.|++|+...
T Consensus       239 ~~~~~~~~~~----~~~~~-~~~v~--~~~~s~-~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          239 EQGPWKKTLL----KEEKF-PDVLW--RASWSL-SGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             TTSCCEEEES----SSSCC-SSCEE--EEEECS-SSCCEEEEETTSCEEEEEECT
T ss_pred             CCCccceeee----ecccC-CCcEE--EEEECC-CCCEEEEEcCCCcEEEEEECC
Confidence            531  11111    01122 23355  899999 799999999999999999864

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4e-31  Score=301.71  Aligned_cols=290  Identities=15%  Similarity=0.167  Sum_probs=224.3

Q ss_pred             CCCCcC--eEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEE
Q 001295          409 KDPGVS--VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  486 (1106)
Q Consensus       409 ~~h~~~--V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw  486 (1106)
                      .+|...  +.+++|++  ..+++++.|+.|++||+.+++.....  ...|...|.+++|+|+++  +|++|+.||.|++|
T Consensus        88 ~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~--~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~iw  161 (401)
T 4aez_A           88 PGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALA--ETDESTYVASVKWSHDGS--FLSVGLGNGLVDIY  161 (401)
T ss_dssp             TTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEE--ECCTTCCEEEEEECTTSS--EEEEEETTSCEEEE
T ss_pred             CCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEee--ecCCCCCEEEEEECCCCC--EEEEECCCCeEEEE
Confidence            355544  44566654  56888899999999999998866532  223889999999999999  89999999999999


Q ss_pred             eCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCC-CCceeEeeCCCCeeEEEEEecCCCeEEEeee
Q 001295          487 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTYQGFR  565 (1106)
Q Consensus       487 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~  565 (1106)
                      |+.+++.+..+.+|...|.+++|+    +.++++++.||.|++||++. ......+..|...|.+++|+|++        
T Consensus       162 d~~~~~~~~~~~~~~~~v~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~--------  229 (401)
T 4aez_A          162 DVESQTKLRTMAGHQARVGCLSWN----RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDG--------  229 (401)
T ss_dssp             ETTTCCEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS--------
T ss_pred             ECcCCeEEEEecCCCCceEEEEEC----CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCC--------
Confidence            999999999999999999999983    25899999999999999984 44455666666666666666555        


Q ss_pred             ccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCC-CEEEEEe--CCCcEEEEEccCC
Q 001295          566 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG-CLLAVST--NDNGIKILATSDG  642 (1106)
Q Consensus       566 ~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~--~dg~i~iwd~~~~  642 (1106)
                                   ++|++++.|+.|++||+.+++.+..+..+  ...|.+++|+|++ .++++++  .|+.|++||+.++
T Consensus       230 -------------~~l~s~~~d~~v~iwd~~~~~~~~~~~~~--~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~  294 (401)
T 4aez_A          230 -------------LQLASGGNDNVVQIWDARSSIPKFTKTNH--NAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG  294 (401)
T ss_dssp             -------------SEEEEEETTSCEEEEETTCSSEEEEECCC--SSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC
T ss_pred             -------------CEEEEEeCCCeEEEccCCCCCccEEecCC--cceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC
Confidence                         48999999999999999999998888766  4479999999966 5666654  6999999998655


Q ss_pred             chhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEe
Q 001295          643 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK  722 (1106)
Q Consensus       643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~  722 (1106)
                      . .+..+                                                                         
T Consensus       295 ~-~~~~~-------------------------------------------------------------------------  300 (401)
T 4aez_A          295 A-RVNTV-------------------------------------------------------------------------  300 (401)
T ss_dssp             C-EEEEE-------------------------------------------------------------------------
T ss_pred             C-EEEEE-------------------------------------------------------------------------
Confidence            1 10000                                                                         


Q ss_pred             cCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCcccc
Q 001295          723 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN  802 (1106)
Q Consensus       723 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  802 (1106)
                                                                                                      
T Consensus       301 --------------------------------------------------------------------------------  300 (401)
T 4aez_A          301 --------------------------------------------------------------------------------  300 (401)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCCCCeeEEEEecCCCEEEEE--e-CCeEEEEEcCCCceee--eecCCCCCeeEEEEecCCCceEEEeeCCCcEE
Q 001295          803 DVTDSNPEEAVPCFALSKNDSYVMSA--S-GGKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQ  877 (1106)
Q Consensus       803 ~~~~~~~~~~v~~l~~s~~~~~l~~~--s-dg~i~vwd~~~~~~~~--~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~  877 (1106)
                           .+...|.+++|+|++++++++  + ||.|++||+.++....  .+.+|...|.+++|+| ++++|++++.||.|+
T Consensus       301 -----~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~~~dg~i~  374 (401)
T 4aez_A          301 -----DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSP-DGRILSTAASDENLK  374 (401)
T ss_dssp             -----ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECT-TSSEEEEECTTSEEE
T ss_pred             -----eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECC-CCCEEEEEeCCCcEE
Confidence                 033446777777777777773  2 6888888887754443  4678999999999999 999999999999999


Q ss_pred             EEEeecceEEEEec
Q 001295          878 IYNVRVDEVKSKLK  891 (1106)
Q Consensus       878 iwd~~~~~~~~~l~  891 (1106)
                      +|++.+++.+....
T Consensus       375 iw~~~~~~~~~~~~  388 (401)
T 4aez_A          375 FWRVYDGDHVKRPI  388 (401)
T ss_dssp             EEECCC--------
T ss_pred             EEECCCCccccccc
Confidence            99999988776543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=8.6e-32  Score=295.71  Aligned_cols=226  Identities=19%  Similarity=0.299  Sum_probs=175.4

Q ss_pred             ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCC--CCceEEEEecCCCcEE
Q 001295          407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIK  484 (1106)
Q Consensus       407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d--~~~~~l~s~~~d~~i~  484 (1106)
                      ++.+|.+.|++++|+|+|++||+|+.|++|+|||+.+++.. ....+.+|.+.|.+++|+++  +.  +|++|+.|++|+
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v~   84 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKVI   84 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCEE
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEEE
Confidence            57899999999999999999999999999999999987532 23468899999999999864  66  799999999999


Q ss_pred             EEeCCCCc--eeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCc---eeEeeCCCCeeEEEEEecCCCe
Q 001295          485 VWDATNGA--KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS---RVDYEAPGRWCTTMAYSADGTR  559 (1106)
Q Consensus       485 iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~  559 (1106)
                      +||+++++  .+..+.+|...|.+++|+++.++.+|++|+.|+.|++||++....   ...+..|...+.+++|+|+...
T Consensus        85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  164 (316)
T 3bg1_A           85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP  164 (316)
T ss_dssp             EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred             EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence            99999874  567888999999999998876678999999999999999987543   2344567778888888887420


Q ss_pred             E-EEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCc---ceeEEEccCCCCCCcCeEEEccCC----CEEEEEeCC
Q 001295          560 T-YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV---QLLTSIDADGGLPASPRIRFNKDG----CLLAVSTND  631 (1106)
Q Consensus       560 ~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~v~~v~~s~~~----~~l~~~~~d  631 (1106)
                      - +..+..+     .....+.+|++++.|+.|++||+..+   +.+..+.+|  ...|.+++|+|++    .+|++++.|
T Consensus       165 ~~~~~~~~~-----~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h--~~~V~~v~~sp~~~~~~~~las~s~D  237 (316)
T 3bg1_A          165 GSLIDHPSG-----QKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH--SDWVRDVAWAPSIGLPTSTIASCSQD  237 (316)
T ss_dssp             ------CCS-----CCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCC--SSCEEEEECCCCSSCSCCEEEEEETT
T ss_pred             ccccccccc-----cCccccceEEEecCCCeEEEEEeCCCCccceeeecccC--CCceEEEEecCCCCCCCceEEEEcCC
Confidence            0 0000000     01112467999999999999999755   345555554  5589999999986    899999999


Q ss_pred             CcEEEEEccCC
Q 001295          632 NGIKILATSDG  642 (1106)
Q Consensus       632 g~i~iwd~~~~  642 (1106)
                      ++|++|++.+.
T Consensus       238 ~~v~iw~~~~~  248 (316)
T 3bg1_A          238 GRVFIWTCDDA  248 (316)
T ss_dssp             CEEEEEECSST
T ss_pred             CeEEEEEccCc
Confidence            99999998653

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=8.5e-31  Score=304.70  Aligned_cols=273  Identities=12%  Similarity=0.193  Sum_probs=200.6

Q ss_pred             ccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCC------------cC
Q 001295          347 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG------------VS  414 (1106)
Q Consensus       347 ~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~------------~~  414 (1106)
                      +.|.+.|++++|+|+|++ ||+|+.||.|+|||+.+++.......        ........+.+|.            ..
T Consensus        25 ~~~~~~V~~v~~s~~g~~-la~g~~dg~v~iw~~~~~~~~~~~~~--------~~~~~~~~~~~h~~~~~~~~~~~~~~~   95 (447)
T 3dw8_B           25 VAEADIISTVEFNHSGEL-LATGDKGGRVVIFQQEQENKIQSHSR--------GEYNVYSTFQSHEPEFDYLKSLEIEEK   95 (447)
T ss_dssp             CCGGGSEEEEEECSSSSE-EEEEETTSEEEEEEECC-----CCCC--------CCEEEEEEEECCCCEEEGGGTEEECCC
T ss_pred             ccccCcEEEEEECCCCCE-EEEEcCCCeEEEEEecCCCCCCcccc--------cceeEecccccccccccccccccccCc
Confidence            457899999999999995 99999999999999998763110000        0000011367887            88


Q ss_pred             eEEEEEccCC--CEEEEEeCCCeEEEEEccCCceee------------------------------------eeee-ecc
Q 001295          415 VNRVIWSPDG--SLFGVAYSRHIVQIYSYHGGDEVR------------------------------------QHLE-IDA  455 (1106)
Q Consensus       415 V~~l~~spdg--~~las~~~d~~v~iwd~~~~~~~~------------------------------------~~~~-l~~  455 (1106)
                      |.+++|+|++  .+|++++.|++|++||+.+++...                                    .... +.+
T Consensus        96 V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (447)
T 3dw8_B           96 INKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA  175 (447)
T ss_dssp             CCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC
T ss_pred             eEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC
Confidence            9999999998  899999999999999998754310                                    0011 368


Q ss_pred             ccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCC-CceeEE-------EeccCCCeEEEeccccCCceEEEEEecCCeE
Q 001295          456 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-GAKQYI-------FEGHEAPVYSVCPHHKENIQFIFSTALDGKI  527 (1106)
Q Consensus       456 h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~~~~~-------~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i  527 (1106)
                      |...|.+++|+|+++  +|++| .|+.|++||+.+ ++.+..       +.+|...|.+++|+++.. .+|++|+.||.|
T Consensus       176 h~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~s~~~dg~i  251 (447)
T 3dw8_B          176 HTYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSC-NTFVYSSSKGTI  251 (447)
T ss_dssp             CSSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCT-TEEEEEETTSCE
T ss_pred             CCcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCC-cEEEEEeCCCeE
Confidence            999999999999999  78888 799999999984 444442       568999999999976531 689999999999


Q ss_pred             EEEeCCCCCc----eeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCC-cceeE
Q 001295          528 KAWLYDNLGS----RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-VQLLT  602 (1106)
Q Consensus       528 ~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~  602 (1106)
                      ++||+++...    ...+..+.....        ... .......+.+++|+|++.+|++++. +.|++||+.+ ++.+.
T Consensus       252 ~iwd~~~~~~~~~~~~~~~~~~~~~~--------~~~-~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~  321 (447)
T 3dw8_B          252 RLCDMRASALCDRHSKLFEEPEDPSN--------RSF-FSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVE  321 (447)
T ss_dssp             EEEETTTCSSSCTTCEEECCC-------------CCH-HHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSC
T ss_pred             EEEECcCCccccceeeEeccCCCccc--------ccc-ccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccc
Confidence            9999998765    455555543000        000 0001124455555555568999888 9999999997 88888


Q ss_pred             EEccCCCCCC-------------cCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295          603 SIDADGGLPA-------------SPRIRFNKDGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       603 ~~~~~~~~~~-------------v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                      .+..+.....             +..++|+|++++|++|+.||.|++||+.++
T Consensus       322 ~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~  374 (447)
T 3dw8_B          322 TYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTK  374 (447)
T ss_dssp             CEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTC
T ss_pred             eeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCC
Confidence            8876643111             234999999999999999999999999887

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.98  E-value=1.7e-30  Score=291.00  Aligned_cols=226  Identities=12%  Similarity=0.130  Sum_probs=179.5

Q ss_pred             ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCcee-eeeeeeccccCCeeEEEEcC--CCCceEEEEecCCCcE
Q 001295          407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSH--PNKQLCVITCGDDKTI  483 (1106)
Q Consensus       407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~-~~~~~l~~h~~~V~~~~~s~--d~~~~~l~s~~~d~~i  483 (1106)
                      ++.+|.+.|++++|+|++++||+|+.||.|++||+.++... .....+.+|...|.+++|+|  ++.  +|++|+.|+.|
T Consensus         6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~--~l~s~~~dg~v   83 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR--IIASASYDKTV   83 (351)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS--EEEEEETTSCE
T ss_pred             cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC--EEEEEcCCCeE
Confidence            57899999999999999999999999999999999976432 33446789999999999999  577  89999999999


Q ss_pred             EEEeCCCC---------ceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEe
Q 001295          484 KVWDATNG---------AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYS  554 (1106)
Q Consensus       484 ~iwd~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  554 (1106)
                      ++||+.++         +.+..+.+|...|.+++|+++.++.+|++++.||.|++||+++......+.... .+..+.+.
T Consensus        84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~~~  162 (351)
T 3f3f_A           84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTS-EMKVLSIP  162 (351)
T ss_dssp             EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEE-EEESCSCC
T ss_pred             EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccc-cccccccc
Confidence            99999887         567889999999999999876335799999999999999998876544332100 01111111


Q ss_pred             cCCCeEEEeeeccceeEEEEcCC---CCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCC----CEEEE
Q 001295          555 ADGTRTYQGFRKRSLGVVQFDTT---KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG----CLLAV  627 (1106)
Q Consensus       555 ~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~----~~l~~  627 (1106)
                      +.       .....+.++.|+|+   +..+++++.++.+.+|+...++.........+...|.+++|+|++    ++|++
T Consensus       163 ~~-------~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s  235 (351)
T 3f3f_A          163 PA-------NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIAT  235 (351)
T ss_dssp             CS-------SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEE
T ss_pred             cC-------CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEE
Confidence            11       12235666777775   778999999999999988887763333333445689999999998    89999


Q ss_pred             EeCCCcEEEEEccCC
Q 001295          628 STNDNGIKILATSDG  642 (1106)
Q Consensus       628 ~~~dg~i~iwd~~~~  642 (1106)
                      ++.||.|++||+.++
T Consensus       236 ~~~dg~i~iwd~~~~  250 (351)
T 3f3f_A          236 GCKDGRIRIFKITEK  250 (351)
T ss_dssp             EETTSCEEEEEEEEC
T ss_pred             EcCCCeEEEEeCCCC
Confidence            999999999999765

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.98  E-value=2.1e-31  Score=292.59  Aligned_cols=246  Identities=12%  Similarity=0.139  Sum_probs=200.4

Q ss_pred             CCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCc--eeeeecCCCCCeeEEEEecC-CCceEEEeeCCCcEEEEEeec
Q 001295          808 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFK--TMATFMPPPPAATFLAFHPQ-DNNIIAIGMDDSSIQIYNVRV  883 (1106)
Q Consensus       808 ~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~--~~~~~~~~~~~v~~l~~s~~-d~~~la~g~~dg~v~iwd~~~  883 (1106)
                      +|...|++++|+|+|++|++|+ |++|+|||+.++.  .+..+.+|...|.+++|+++ ++++||+|+.|++|++||+.+
T Consensus        11 ~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~   90 (316)
T 3bg1_A           11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN   90 (316)
T ss_dssp             ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSS
T ss_pred             cccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCC
Confidence            3999999999999999999999 9999999998764  46778999999999999862 488999999999999999988


Q ss_pred             c--eEEEEecCcccCeeEEEEecC--CCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCC----
Q 001295          884 D--EVKSKLKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD----  955 (1106)
Q Consensus       884 ~--~~~~~l~~h~~~V~~l~~s~d--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~d----  955 (1106)
                      +  +.+..+.+|...|++++|+|+  +.+|++++.|++|++||+.....  ........+|.   ..+.+++|+|+    
T Consensus        91 ~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~--~~~~~~~~~h~---~~v~~~~~~~~~~~~  165 (316)
T 3bg1_A           91 GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ--WEVKKINNAHT---IGCNAVSWAPAVVPG  165 (316)
T ss_dssp             SCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC--EEECCBTTSSS---SCBCCCEECCCCCC-
T ss_pred             CcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC--cceeeeecccc---CCcceEEEccccCCc
Confidence            7  466788899999999999998  78999999999999999987432  11233344554   37889999998    


Q ss_pred             -------------CcEEEE-EeCCeEEEEecCCc---eEeeecccCCCCCCeeEEEECCCC----CEEEEEEcCCeEEEE
Q 001295          956 -------------QIHFLV-VHETQLAIFETTKL---ECVKQWVPRESSAPITHATFSCDS----QLVYACFLDATVCVF 1014 (1106)
Q Consensus       956 -------------g~~l~~-~~d~~v~i~d~~~~---~~~~~~~~~~h~~~v~~l~~s~d~----~~l~t~s~Dg~i~vw 1014 (1106)
                                   +++|++ +.|+.|++||+++.   +++..+.  +|...|.+++|+|++    .+|++++.|++|+||
T Consensus       166 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~--~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw  243 (316)
T 3bg1_A          166 SLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE--AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIW  243 (316)
T ss_dssp             -----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB--CCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEE
T ss_pred             cccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecc--cCCCceEEEEecCCCCCCCceEEEEcCCCeEEEE
Confidence                         467887 58999999999755   3455544  899999999999987    789999999999999


Q ss_pred             EcCCcee---E-EeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecC
Q 001295         1015 SAANLKL---R-CRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1071 (1106)
Q Consensus      1015 d~~~~~~---~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~ 1071 (1106)
                      ++.+...   . ..+       .+| ...++  .++|+| ++++|++++.||+|++|+...
T Consensus       244 ~~~~~~~~~~~~~~~-------~~~-~~~v~--~v~~sp-~g~~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          244 TCDDASSNTWSPKLL-------HKF-NDVVW--HVSWSI-TANILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             ECSSTTCCCCBCCEE-------EEC-SSCEE--EEEECT-TTCCEEEEESSSCEEEEEECT
T ss_pred             EccCccccchhhhhh-------hcC-CCcEE--EEEEcC-CCCEEEEEcCCCeEEEEEECC
Confidence            9986321   1 111       122 23366  899999 689999999999999999864

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=5.8e-30  Score=295.62  Aligned_cols=233  Identities=20%  Similarity=0.334  Sum_probs=204.7

Q ss_pred             cCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEE
Q 001295          348 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF  427 (1106)
Q Consensus       348 ~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l  427 (1106)
                      .|...|.|++|  +|+ ++++|+.||.|+|||+.+++.+..                   +.+|.+.|.+++|  ++++|
T Consensus       131 ~~~~~v~~~~~--d~~-~l~~g~~dg~i~iwd~~~~~~~~~-------------------~~~h~~~v~~l~~--~~~~l  186 (435)
T 1p22_A          131 ETSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY--DERVI  186 (435)
T ss_dssp             SSCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--CSSEE
T ss_pred             CCCCcEEEEEE--CCC-EEEEEeCCCeEEEEeCCCCeEEEE-------------------EcCCCCcEEEEEE--CCCEE
Confidence            47788999887  788 499999999999999999887653                   6899999999999  88999


Q ss_pred             EEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCcee---EEEeccCCCe
Q 001295          428 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ---YIFEGHEAPV  504 (1106)
Q Consensus       428 as~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~~h~~~v  504 (1106)
                      ++|+.||+|++||+.+++.+.   .+.+|...|.+++|++  .  ++++|+.|+.|++||+.++...   ..+.+|...|
T Consensus       187 ~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v  259 (435)
T 1p22_A          187 ITGSSDSTVRVWDVNTGEMLN---TLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV  259 (435)
T ss_dssp             EEEETTSCEEEEESSSCCEEE---EECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCE
T ss_pred             EEEcCCCeEEEEECCCCcEEE---EEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcE
Confidence            999999999999999988665   6789999999999974  4  7999999999999999988766   6788999999


Q ss_pred             EEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEE
Q 001295          505 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  584 (1106)
Q Consensus       505 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  584 (1106)
                      .+++|    ++.++++|+.||.|++||+++......+..+...+.++.+.  +                     +++++|
T Consensus       260 ~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~---------------------~~l~~g  312 (435)
T 1p22_A          260 NVVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--D---------------------RLVVSG  312 (435)
T ss_dssp             EEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--T---------------------TEEEEE
T ss_pred             EEEEe----CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--C---------------------CEEEEE
Confidence            99997    34689999999999999999988888888887777777663  2                     369999


Q ss_pred             ECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295          585 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       585 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                      +.||.|++||+.+++.+..+..|  ...|.+++|  ++.+|++|+.||.|++||+.++
T Consensus       313 ~~dg~i~iwd~~~~~~~~~~~~h--~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~  366 (435)
T 1p22_A          313 SSDNTIRLWDIECGACLRVLEGH--EELVRCIRF--DNKRIVSGAYDGKIKVWDLVAA  366 (435)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCC--SSCEEEEEC--CSSEEEEEETTSCEEEEEHHHH
T ss_pred             eCCCeEEEEECCCCCEEEEEeCC--cCcEEEEEe--cCCEEEEEeCCCcEEEEECCCC
Confidence            99999999999999999999866  447888888  7899999999999999998654

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=5.1e-30  Score=289.49  Aligned_cols=300  Identities=16%  Similarity=0.167  Sum_probs=235.5

Q ss_pred             ccCCCCcCeEEEEEccC---CCEEEEEeCCCeEEEEEccC-CceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCc
Q 001295          407 LVKDPGVSVNRVIWSPD---GSLFGVAYSRHIVQIYSYHG-GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT  482 (1106)
Q Consensus       407 ~~~~h~~~V~~l~~spd---g~~las~~~d~~v~iwd~~~-~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~  482 (1106)
                      .+.+|.+.|++++|+|+   |++|++|+.||.|+|||+.+ +..+.  ..+.+|...|.+++|+|+++  +|++++.|+.
T Consensus        34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~  109 (368)
T 3mmy_A           34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP--KAQQMHTGPVLDVCWSDDGS--KVFTASCDKT  109 (368)
T ss_dssp             CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEE--EEEEECSSCEEEEEECTTSS--EEEEEETTSE
T ss_pred             eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeE--EEeccccCCEEEEEECcCCC--EEEEEcCCCc
Confidence            47899999999999999   69999999999999999997 44332  35778999999999999999  8999999999


Q ss_pred             EEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEE
Q 001295          483 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ  562 (1106)
Q Consensus       483 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~  562 (1106)
                      |++||+.+++.+. +.+|...|.+++|.+.+++.+|++++.||.|++||+++......+..+. .+.++.+.        
T Consensus       110 v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~--------  179 (368)
T 3mmy_A          110 AKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVI--------  179 (368)
T ss_dssp             EEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEE--------
T ss_pred             EEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEec--------
Confidence            9999999998776 5569999999999777778899999999999999999887777666554 23333332        


Q ss_pred             eeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCE----EEEEeCCCcEEEEE
Q 001295          563 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCL----LAVSTNDNGIKILA  638 (1106)
Q Consensus       563 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~----l~~~~~dg~i~iwd  638 (1106)
                                     ...+++++.++.+++|++.................+.++++.++...    +++++.||.|++|+
T Consensus       180 ---------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~  244 (368)
T 3mmy_A          180 ---------------YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHY  244 (368)
T ss_dssp             ---------------TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEE
T ss_pred             ---------------CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEe
Confidence                           23588899999999999987665444433333345667777766554    99999999999999


Q ss_pred             ccCCch--hhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCC
Q 001295          639 TSDGIR--LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND  716 (1106)
Q Consensus       639 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  716 (1106)
                      +.....  ....+.+|...                                                             
T Consensus       245 ~~~~~~~~~~~~~~~~~~~-------------------------------------------------------------  263 (368)
T 3mmy_A          245 INPPNPAKDNFTFKCHRSN-------------------------------------------------------------  263 (368)
T ss_dssp             SSCSCHHHHSEEEECSEEC-------------------------------------------------------------
T ss_pred             cCCCCccccceeeeeeecc-------------------------------------------------------------
Confidence            976521  01111110000                                                             


Q ss_pred             ceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCC
Q 001295          717 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPS  796 (1106)
Q Consensus       717 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~  796 (1106)
                                                            .. .                                      
T Consensus       264 --------------------------------------~~-~--------------------------------------  266 (368)
T 3mmy_A          264 --------------------------------------GT-N--------------------------------------  266 (368)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------cc-c--------------------------------------
Confidence                                                  00 0                                      


Q ss_pred             CCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCc
Q 001295          797 GIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSS  875 (1106)
Q Consensus       797 ~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~  875 (1106)
                             .....|...|++++|+|++++|++++ ||.|++||+.+++.+..+.+|...|++++|+| ++++||+|+.|+.
T Consensus       267 -------~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~s~d~~  338 (368)
T 3mmy_A          267 -------TSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNH-NGNIFAYASSYDW  338 (368)
T ss_dssp             --------CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECT-TSSCEEEEECCCS
T ss_pred             -------ccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECC-CCCeEEEEecccc
Confidence                   00011566799999999999999998 89999999999999999999999999999999 9999999999986


Q ss_pred             EEEEEe
Q 001295          876 IQIYNV  881 (1106)
Q Consensus       876 v~iwd~  881 (1106)
                      .+.|++
T Consensus       339 ~~~~~~  344 (368)
T 3mmy_A          339 SKGHEF  344 (368)
T ss_dssp             TTCGGG
T ss_pred             cccccc
Confidence            655554

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=1.9e-29  Score=278.30  Aligned_cols=282  Identities=17%  Similarity=0.287  Sum_probs=229.7

Q ss_pred             eEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEE
Q 001295          746 ISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYV  825 (1106)
Q Consensus       746 i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l  825 (1106)
                      ...++||+++  +++++.|++|+|||+.                      +|+.+.. +...+|...|++++|+|++++|
T Consensus        28 ~~~l~WS~~~--~lAvg~D~tV~iWd~~----------------------tg~~~~~-~~~~~~~~~V~~v~~~~~~~~l   82 (318)
T 4ggc_A           28 LNLVDWSSGN--VLAVALDNSVYLWSAS----------------------SGDILQL-LQMEQPGEYISSVAWIKEGNYL   82 (318)
T ss_dssp             CBCEEECTTS--EEEEEETTEEEEEETT----------------------TCCEEEE-EECCSTTCCEEEEEECTTSSEE
T ss_pred             ceEEEECCCC--EEEEEeCCEEEEEECC----------------------CCCEEEE-EEecCCCCeEEEEEECCCCCEE
Confidence            4678999886  4455669999999875                      4433221 2223488899999999999999


Q ss_pred             EEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecc-eEEEEecCcccCeeEEEEe
Q 001295          826 MSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKLKGHSKRITGLAFS  903 (1106)
Q Consensus       826 ~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~-~~~~~l~~h~~~V~~l~~s  903 (1106)
                      ++|+ ||+|++||+.+++.+..+.+|...+.++.+   ++.++++|+.++.+++|+.... ..+..+.+|...+..++|+
T Consensus        83 ~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~---~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (318)
T 4ggc_A           83 AVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW---NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA  159 (318)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE---ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred             EEEECCCcEEEeecCCceeEEEecCccceEEEeec---CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEc
Confidence            9999 899999999999999999999988877665   4579999999999999998874 5667889999999999999


Q ss_pred             cCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE----EeCCeEEEEecCCceEee
Q 001295          904 HALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV----VHETQLAIFETTKLECVK  979 (1106)
Q Consensus       904 ~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~----~~d~~v~i~d~~~~~~~~  979 (1106)
                      +++++|++++.|++|++||+.+++....... ....+.   ..+..++++|++..++.    +.++.|++||........
T Consensus       160 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~  235 (318)
T 4ggc_A          160 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ-TFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS  235 (318)
T ss_dssp             TTSSEEEEEETTSCEEEEESSCBTTBSCCSE-EECCCC---SCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEE
T ss_pred             CCCCEEEEEecCcceeEEECCCCccccccee-eecccC---CceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccc
Confidence            9999999999999999999998764332222 222222   47889999998765443    257899999999888776


Q ss_pred             ecccCCCCCCeeEEEECCCCCEEEEEE--cCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEE
Q 001295          980 QWVPRESSAPITHATFSCDSQLVYACF--LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1057 (1106)
Q Consensus       980 ~~~~~~h~~~v~~l~~s~d~~~l~t~s--~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t 1057 (1106)
                      ..   .|...+..+.|+|++..+++++  .|++|+|||+.+++.+..+.       +|.. .|.  +++|+| |+++|++
T Consensus       236 ~~---~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~-------gH~~-~V~--~l~~sp-dg~~l~S  301 (318)
T 4ggc_A          236 AV---DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-------GHTS-RVL--SLTMSP-DGATVAS  301 (318)
T ss_dssp             EE---ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-------CCSS-CEE--EEEECT-TSSCEEE
T ss_pred             cc---cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEc-------CCCC-CEE--EEEEcC-CCCEEEE
Confidence            65   4577899999999999987765  79999999999999998887       4433 366  899999 7999999


Q ss_pred             EeCCCcEEEEeecCCC
Q 001295         1058 GLSDGGVHVFEPLESE 1073 (1106)
Q Consensus      1058 ~~~Dg~v~vW~~~~~~ 1073 (1106)
                      |+.||+|+|||+.+.+
T Consensus       302 ~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          302 AAADETLRLWRCFELD  317 (318)
T ss_dssp             EETTTEEEEECCSCCC
T ss_pred             EecCCeEEEEECCCCC
Confidence            9999999999997754

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=4.2e-30  Score=286.91  Aligned_cols=294  Identities=13%  Similarity=0.103  Sum_probs=230.0

Q ss_pred             ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEE
Q 001295          407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  486 (1106)
Q Consensus       407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw  486 (1106)
                      +..+|.+.|++++|+|++++|++++.|+.|+|||+.+++.......+.+|...|.+++|+|+++. +|++|+.|+.|++|
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~w   84 (342)
T 1yfq_A            6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKV   84 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEE
T ss_pred             cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEE
Confidence            35789999999999999999999999999999999988732223346689999999999999872 38899999999999


Q ss_pred             eC-CCCceeEEEec--cCCCeEEEeccccCCceEEEEEecCCeEEEEeCCC---------CCceeEeeCCCCeeEEEEEe
Q 001295          487 DA-TNGAKQYIFEG--HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN---------LGSRVDYEAPGRWCTTMAYS  554 (1106)
Q Consensus       487 d~-~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~~~~s  554 (1106)
                      |+ .+++. ..+.+  |...|.+++|++   +.+|++++.|+.|++||+++         ......+. +...+.+++  
T Consensus        85 d~~~~~~~-~~~~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~--  157 (342)
T 1yfq_A           85 DLIGSPSF-QALTNNEANLGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMD--  157 (342)
T ss_dssp             CSSSSSSE-EECBSCCCCSCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEE--
T ss_pred             EeccCCce-EeccccCCCCceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEE--
Confidence            99 77754 78888  999999999977   47999999999999999886         44333333 444444444  


Q ss_pred             cCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCC-cceeEEEccCCCCCCcCeEEEcc-CCCEEEEEeCCC
Q 001295          555 ADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDN  632 (1106)
Q Consensus       555 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg  632 (1106)
                                         ++|++  +++++.|+.|++||+.+ +..........+...+.+++|+| +++++++++.||
T Consensus       158 -------------------~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg  216 (342)
T 1yfq_A          158 -------------------TNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDG  216 (342)
T ss_dssp             -------------------ECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTS
T ss_pred             -------------------ecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCC
Confidence                               44444  88999999999999988 55432222223345799999999 999999999999


Q ss_pred             cEEEEEccCCc-----hhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCC
Q 001295          633 GIKILATSDGI-----RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVK  707 (1106)
Q Consensus       633 ~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  707 (1106)
                      .|++|++....     .....+..                                                        
T Consensus       217 ~i~i~~~~~~~~~~~~~~~~~~~~--------------------------------------------------------  240 (342)
T 1yfq_A          217 RVAVEFFDDQGDDYNSSKRFAFRC--------------------------------------------------------  240 (342)
T ss_dssp             EEEEEECCTTCCSTTCTTCEEEEC--------------------------------------------------------
T ss_pred             cEEEEEEcCCCcccccccceeeec--------------------------------------------------------
Confidence            99999986540     00000000                                                        


Q ss_pred             ccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCcccccc
Q 001295          708 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASV  787 (1106)
Q Consensus       708 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~  787 (1106)
                                                        |...                                          
T Consensus       241 ----------------------------------~~~~------------------------------------------  244 (342)
T 1yfq_A          241 ----------------------------------HRLN------------------------------------------  244 (342)
T ss_dssp             ----------------------------------CCCC------------------------------------------
T ss_pred             ----------------------------------cccc------------------------------------------
Confidence                                              0000                                          


Q ss_pred             CccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCC-CCCeeEEEEecCCCc
Q 001295          788 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP-PPAATFLAFHPQDNN  865 (1106)
Q Consensus       788 ~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~-~~~v~~l~~s~~d~~  865 (1106)
                                      ..+..|...|.+++|+|++++|++++ ||.|++||+.+++.+..+.+| ...|.+++  | +++
T Consensus       245 ----------------~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~-~~~  305 (342)
T 1yfq_A          245 ----------------LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--C-SDN  305 (342)
T ss_dssp             ----------------TTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--E-CSS
T ss_pred             ----------------ccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--C-CCC
Confidence                            00012677899999999999999998 899999999999999999998 99999999  7 899


Q ss_pred             eEEEeeCCCc-EEEEE
Q 001295          866 IIAIGMDDSS-IQIYN  880 (1106)
Q Consensus       866 ~la~g~~dg~-v~iwd  880 (1106)
                      +|++|+.||. .+.|.
T Consensus       306 ~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          306 ILCLATSDDTFKTNAA  321 (342)
T ss_dssp             EEEEEEECTHHHHCSS
T ss_pred             eEEEEecCCccccccc
Confidence            9999999998 44443

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=2.6e-30  Score=288.57  Aligned_cols=245  Identities=9%  Similarity=0.008  Sum_probs=202.6

Q ss_pred             cCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCC-E
Q 001295          348 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS-L  426 (1106)
Q Consensus       348 ~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~-~  426 (1106)
                      .|.+.|++++|+|+|++ |++|+.||.|+|||+.+++.....                ..+.+|...|.+++|+|+++ +
T Consensus         9 ~h~~~v~~~~~s~~~~~-l~~~~~d~~v~iw~~~~~~~~~~~----------------~~~~~~~~~v~~~~~~~~~~~~   71 (342)
T 1yfq_A            9 APKDYISDIKIIPSKSL-LLITSWDGSLTVYKFDIQAKNVDL----------------LQSLRYKHPLLCCNFIDNTDLQ   71 (342)
T ss_dssp             CCSSCEEEEEEEGGGTE-EEEEETTSEEEEEEEETTTTEEEE----------------EEEEECSSCEEEEEEEESSSEE
T ss_pred             CCCCcEEEEEEcCCCCE-EEEEcCCCeEEEEEeCCCCccccc----------------eeeeecCCceEEEEECCCCCcE
Confidence            49999999999999995 899999999999999887621100                02458899999999999999 9


Q ss_pred             EEEEeCCCeEEEEEc-cCCceeeeeeeecc--ccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCC---------Ccee
Q 001295          427 FGVAYSRHIVQIYSY-HGGDEVRQHLEIDA--HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN---------GAKQ  494 (1106)
Q Consensus       427 las~~~d~~v~iwd~-~~~~~~~~~~~l~~--h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~---------~~~~  494 (1106)
                      |++|+.||.|++||+ .+++.    ..+.+  |...|.+++|+| +.  ++++++.|+.|++||+++         ++++
T Consensus        72 l~~~~~dg~i~~wd~~~~~~~----~~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  144 (342)
T 1yfq_A           72 IYVGTVQGEILKVDLIGSPSF----QALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAVKNLNS  144 (342)
T ss_dssp             EEEEETTSCEEEECSSSSSSE----EECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEEEESCS
T ss_pred             EEEEcCCCeEEEEEeccCCce----EeccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEcccccccccccccCCee
Confidence            999999999999999 88754    25778  999999999999 77  899999999999999988         7777


Q ss_pred             EEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCC-CCce--eEeeCCCCeeEEEEEecCCCeEEEeeeccceeE
Q 001295          495 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSR--VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV  571 (1106)
Q Consensus       495 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~--~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~  571 (1106)
                      ..+. |...|.+++|++  +  .+++++.|+.|++||++. ....  .....+...+.+                     
T Consensus       145 ~~~~-~~~~v~~~~~~~--~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~---------------------  198 (342)
T 1yfq_A          145 NNTK-VKNKIFTMDTNS--S--RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRD---------------------  198 (342)
T ss_dssp             SSSS-SCCCEEEEEECS--S--EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEE---------------------
T ss_pred             eEEe-eCCceEEEEecC--C--cEEEEeCCCeEEEEECCccccccceeeecCCCCceeE---------------------
Confidence            7776 889999999864  3  299999999999999987 4432  222333444444                     


Q ss_pred             EEEcC-CCCEEEEEECCCeEEEEECCCc------ceeEEEccCCC-------CCCcCeEEEccCCCEEEEEeCCCcEEEE
Q 001295          572 VQFDT-TKNRFLAAGDDFSIKFWDMDSV------QLLTSIDADGG-------LPASPRIRFNKDGCLLAVSTNDNGIKIL  637 (1106)
Q Consensus       572 ~~~~~-~~~~l~~~~~d~~i~iwd~~~~------~~~~~~~~~~~-------~~~v~~v~~s~~~~~l~~~~~dg~i~iw  637 (1106)
                      ++|+| +++++++++.||.|++|++...      +....+..+..       ...|.+++|+|++++|++++.||.|++|
T Consensus       199 i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw  278 (342)
T 1yfq_A          199 VALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW  278 (342)
T ss_dssp             EEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred             EEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEE
Confidence            45555 5558999999999999999887      77788876633       3379999999999999999999999999


Q ss_pred             EccCC
Q 001295          638 ATSDG  642 (1106)
Q Consensus       638 d~~~~  642 (1106)
                      |+.++
T Consensus       279 d~~~~  283 (342)
T 1yfq_A          279 NLQTR  283 (342)
T ss_dssp             ETTTT
T ss_pred             cCccH
Confidence            99876

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=6.9e-30  Score=295.03  Aligned_cols=275  Identities=21%  Similarity=0.319  Sum_probs=230.0

Q ss_pred             eccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeC
Q 001295          453 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY  532 (1106)
Q Consensus       453 l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~  532 (1106)
                      ..+|...|.++.|  +++  ++++|+.||.|++||+.+++.+..+.+|...|.+++|    ++.+|++|+.||.|++||+
T Consensus       129 ~~~~~~~v~~~~~--d~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~----~~~~l~sg~~dg~i~vwd~  200 (435)
T 1p22_A          129 RSETSKGVYCLQY--DDQ--KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY----DERVIITGSSDSTVRVWDV  200 (435)
T ss_dssp             CCSSCCCEEEEEC--CSS--EEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC----CSSEEEEEETTSCEEEEES
T ss_pred             ccCCCCcEEEEEE--CCC--EEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE----CCCEEEEEcCCCeEEEEEC
Confidence            3457778999888  677  8999999999999999999999999999999999997    4479999999999999999


Q ss_pred             CCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCccee---EEEccCCC
Q 001295          533 DNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL---TSIDADGG  609 (1106)
Q Consensus       533 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~  609 (1106)
                      .+++....+..|...|.+++|++                       +.+++++.||.|++||+.+++..   ..+.++  
T Consensus       201 ~~~~~~~~~~~h~~~v~~l~~~~-----------------------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--  255 (435)
T 1p22_A          201 NTGEMLNTLIHHCEAVLHLRFNN-----------------------GMMVTCSKDRSIAVWDMASPTDITLRRVLVGH--  255 (435)
T ss_dssp             SSCCEEEEECCCCSCEEEEECCT-----------------------TEEEEEETTSCEEEEECSSSSCCEEEEEECCC--
T ss_pred             CCCcEEEEEcCCCCcEEEEEEcC-----------------------CEEEEeeCCCcEEEEeCCCCCCceeeeEecCC--
Confidence            99888888888877777777643                       25999999999999999988765   444444  


Q ss_pred             CCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhccccccccccc
Q 001295          610 LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAAS  689 (1106)
Q Consensus       610 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  689 (1106)
                      ...|.+++|  +++++++|+.||.|++||+.++ +.+..+                                        
T Consensus       256 ~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~-~~~~~~----------------------------------------  292 (435)
T 1p22_A          256 RAAVNVVDF--DDKYIVSASGDRTIKVWNTSTC-EFVRTL----------------------------------------  292 (435)
T ss_dssp             SSCEEEEEE--ETTEEEEEETTSEEEEEETTTC-CEEEEE----------------------------------------
T ss_pred             CCcEEEEEe--CCCEEEEEeCCCeEEEEECCcC-cEEEEE----------------------------------------
Confidence            457888888  7889999999999999998655 110000                                        


Q ss_pred             ccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEE
Q 001295          690 MVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL  769 (1106)
Q Consensus       690 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i  769 (1106)
                                                                                                      
T Consensus       293 --------------------------------------------------------------------------------  292 (435)
T 1p22_A          293 --------------------------------------------------------------------------------  292 (435)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeec
Q 001295          770 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM  848 (1106)
Q Consensus       770 w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~  848 (1106)
                                                         .  .|...|.++++  +++++++|+ ||.|++||+.+++.+..+.
T Consensus       293 -----------------------------------~--~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~  333 (435)
T 1p22_A          293 -----------------------------------N--GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLE  333 (435)
T ss_dssp             -----------------------------------E--CCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             -----------------------------------c--CCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEe
Confidence                                               0  15566777777  467888888 8999999999999999999


Q ss_pred             CCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecce---------EEEEecCcccCeeEEEEecCCCEEEEEcCCCcEE
Q 001295          849 PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE---------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLC  919 (1106)
Q Consensus       849 ~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~---------~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~  919 (1106)
                      +|...|.+++|   ++.+|++|+.||.|++||+.+++         ++..+.+|.+.|++++|  ++.+|++++.||+|+
T Consensus       334 ~h~~~v~~~~~---~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~  408 (435)
T 1p22_A          334 GHEELVRCIRF---DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTIL  408 (435)
T ss_dssp             CCSSCEEEEEC---CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEE
T ss_pred             CCcCcEEEEEe---cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEE
Confidence            99999999999   56799999999999999998876         88999999999999999  788999999999999


Q ss_pred             EEeCCCcc
Q 001295          920 VWSSDGWE  927 (1106)
Q Consensus       920 vwd~~~~~  927 (1106)
                      +||+.+..
T Consensus       409 iwd~~~~~  416 (435)
T 1p22_A          409 IWDFLNDP  416 (435)
T ss_dssp             EEC-----
T ss_pred             EEECCCCC
Confidence            99998754

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=5.8e-30  Score=290.39  Aligned_cols=254  Identities=17%  Similarity=0.211  Sum_probs=208.0

Q ss_pred             cCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCC--cceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccC--
Q 001295          348 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGS--RERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD--  423 (1106)
Q Consensus       348 ~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd--  423 (1106)
                      +|.+.|++++|+|+|++ ||+|+.||.|+|||+..  ++.+.                   .+.+|...|.+++|+|+  
T Consensus         9 ~h~~~v~~~~~s~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~   68 (379)
T 3jrp_A            9 AHNELIHDAVLDYYGKR-LATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAHPKF   68 (379)
T ss_dssp             ECCCCEEEEEECSSSSE-EEEEETTSCEEEEEEETTEEEEEE-------------------EECCCSSCEEEEEECCGGG
T ss_pred             CCcccEEEEEEcCCCCE-EEEEECCCcEEEEecCCCcceeee-------------------EecCCCCcEEEEEeCCCCC
Confidence            49999999999999995 99999999999999974  33332                   36899999999999987  


Q ss_pred             CCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCC--CCceEEEEecCCCcEEEEeCCCCc--eeEEEec
Q 001295          424 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNGA--KQYIFEG  499 (1106)
Q Consensus       424 g~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~  499 (1106)
                      +++|++|+.||.|++||+.+++.. ....+.+|...|.+++|+|+  +.  ++++++.|+.|++||+.++.  ....+.+
T Consensus        69 ~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~~~~~~~  145 (379)
T 3jrp_A           69 GTILASCSYDGKVLIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIIIDA  145 (379)
T ss_dssp             CSEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCCCEEEEEC
T ss_pred             CCEEEEeccCCEEEEEEcCCCcee-EeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCceeeEEecC
Confidence            999999999999999999998622 33367789999999999999  78  89999999999999999873  4457788


Q ss_pred             cCCCeEEEeccccC-----------CceEEEEEecCCeEEEEeCCCCCce----eEeeCCCCeeEEEEEecCCCeEEEee
Q 001295          500 HEAPVYSVCPHHKE-----------NIQFIFSTALDGKIKAWLYDNLGSR----VDYEAPGRWCTTMAYSADGTRTYQGF  564 (1106)
Q Consensus       500 h~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~v~~~~~s~~~~~~~~~~  564 (1106)
                      |...|.+++|++..           ++.+|++++.||.|++||++.....    ..+..|...|.+++|+|++.      
T Consensus       146 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~------  219 (379)
T 3jrp_A          146 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL------  219 (379)
T ss_dssp             CTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS------
T ss_pred             CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCC------
Confidence            99999999998742           4689999999999999999876543    23445555566665555510      


Q ss_pred             eccceeEEEEcCCCCEEEEEECCCeEEEEECCCcc---eeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccC
Q 001295          565 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ---LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD  641 (1106)
Q Consensus       565 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~  641 (1106)
                                  .+.+|++++.||.|++||+.++.   ....+....+...|.+++|+|++++|++++.||.|++|++..
T Consensus       220 ------------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          220 ------------LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             ------------SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred             ------------CCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence                        04579999999999999998875   333344434556799999999999999999999999999975


Q ss_pred             C
Q 001295          642 G  642 (1106)
Q Consensus       642 ~  642 (1106)
                      +
T Consensus       288 ~  288 (379)
T 3jrp_A          288 E  288 (379)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=8.5e-30  Score=287.67  Aligned_cols=256  Identities=17%  Similarity=0.203  Sum_probs=203.2

Q ss_pred             Ccceeeecc-CCCCcEEEEEecC---CCeEEEEEeccCcEEEEecCC-cceeEEeeeeeeccCcCCccccccccCCCCcC
Q 001295          340 PKTVTRTLN-QGSSPMSMDFHPV---QQTLLLVGTNVGDIGLWEVGS-RERLVLRNFKVWDLGACSMPLQAALVKDPGVS  414 (1106)
Q Consensus       340 ~~~~~~~~~-h~~~v~~~~~sp~---g~~llatg~~dg~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~  414 (1106)
                      +......+. |.+.|++++|+|+   |+ +|++|+.||.|+|||+.+ +..+..                  .+.+|...
T Consensus        28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~------------------~~~~h~~~   88 (368)
T 3mmy_A           28 PMKDIEVTSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIPK------------------AQQMHTGP   88 (368)
T ss_dssp             TTCCEECSSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEEE------------------EEEECSSC
T ss_pred             CcceeEeccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeEE------------------EeccccCC
Confidence            444555554 9999999999999   47 599999999999999997 444322                  36789999


Q ss_pred             eEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEE--cCCCCceEEEEecCCCcEEEEeCCCCc
Q 001295          415 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF--SHPNKQLCVITCGDDKTIKVWDATNGA  492 (1106)
Q Consensus       415 V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~--s~d~~~~~l~s~~~d~~i~iwd~~~~~  492 (1106)
                      |.+++|+|++++|++++.||.|++||+.+++.+.    +.+|...|.+++|  ++++.  +|++++.|+.|++||+++++
T Consensus        89 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~  162 (368)
T 3mmy_A           89 VLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ----IAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTRSSN  162 (368)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSSCSS
T ss_pred             EEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee----eccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECCCCc
Confidence            9999999999999999999999999999987654    5679999999999  88888  89999999999999999999


Q ss_pred             eeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEee--CCCCeeEEEEEecCCCeEEEeeecccee
Q 001295          493 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE--APGRWCTTMAYSADGTRTYQGFRKRSLG  570 (1106)
Q Consensus       493 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~~~~~~~~~i~  570 (1106)
                      .+..+..|. .+.++.+.  .  ..+++++.++.+++|+++.........  .....+..+.+.++...           
T Consensus       163 ~~~~~~~~~-~~~~~~~~--~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  226 (368)
T 3mmy_A          163 PMMVLQLPE-RCYCADVI--Y--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQN-----------  226 (368)
T ss_dssp             CSEEEECSS-CEEEEEEE--T--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTS-----------
T ss_pred             EEEEEecCC-CceEEEec--C--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCC-----------
Confidence            999998765 56666643  3  378899999999999998765443222  12233444444433320           


Q ss_pred             EEEEcCCCCEEEEEECCCeEEEEECCCc---ceeEEEccCCCC----------CCcCeEEEccCCCEEEEEeCCCcEEEE
Q 001295          571 VVQFDTTKNRFLAAGDDFSIKFWDMDSV---QLLTSIDADGGL----------PASPRIRFNKDGCLLAVSTNDNGIKIL  637 (1106)
Q Consensus       571 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~----------~~v~~v~~s~~~~~l~~~~~dg~i~iw  637 (1106)
                            ....+++++.|+.|++|++...   ..+..+..+...          ..|.+++|+|++++|++++.||.|++|
T Consensus       227 ------~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iw  300 (368)
T 3mmy_A          227 ------KPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW  300 (368)
T ss_dssp             ------CEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred             ------CCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEE
Confidence                  0112899999999999999887   556666655321          159999999999999999999999999


Q ss_pred             EccCC
Q 001295          638 ATSDG  642 (1106)
Q Consensus       638 d~~~~  642 (1106)
                      |+.++
T Consensus       301 d~~~~  305 (368)
T 3mmy_A          301 DKDAR  305 (368)
T ss_dssp             ETTTT
T ss_pred             ECCCC
Confidence            98876

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.97  E-value=1.2e-29  Score=295.07  Aligned_cols=304  Identities=12%  Similarity=0.134  Sum_probs=224.1

Q ss_pred             cccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCc-cccccCCCCCC----------
Q 001295          742 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIM-MTNDVTDSNPE----------  810 (1106)
Q Consensus       742 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~-~~~~~~~~~~~----------  810 (1106)
                      +...|.+++|+|++++|++++.||.|++|++.........             ..+.. ....+.+  |.          
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~-------------~~~~~~~~~~~~~--h~~~~~~~~~~~   91 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSH-------------SRGEYNVYSTFQS--HEPEFDYLKSLE   91 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CC-------------CCCCEEEEEEEEC--CCCEEEGGGTEE
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcc-------------cccceeEeccccc--cccccccccccc
Confidence            6789999999999999999999999999998753311000             00000 1111222  65          


Q ss_pred             --CCeeEEEEecCC--CEEEEEe-CCeEEEEEcCCCcee---------------------------------------ee
Q 001295          811 --EAVPCFALSKND--SYVMSAS-GGKISLFNMMTFKTM---------------------------------------AT  846 (1106)
Q Consensus       811 --~~v~~l~~s~~~--~~l~~~s-dg~i~vwd~~~~~~~---------------------------------------~~  846 (1106)
                        ..|.+++|+|++  .+|++++ |++|++||+.++...                                       ..
T Consensus        92 ~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (447)
T 3dw8_B           92 IEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRI  171 (447)
T ss_dssp             ECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEE
T ss_pred             ccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEE
Confidence              889999999998  7888888 999999999764432                                       12


Q ss_pred             -ecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeec-ceEEE-------EecCcccCeeEEEEecCC-CEEEEEcCCC
Q 001295          847 -FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVKS-------KLKGHSKRITGLAFSHAL-NVLVSSGADS  916 (1106)
Q Consensus       847 -~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~-~~~~~-------~l~~h~~~V~~l~~s~d~-~~l~s~s~Dg  916 (1106)
                       ..+|...|++++|+| ++++|++| .||.|++||+.+ ++.+.       .+.+|...|++++|+|++ .+|++++.||
T Consensus       172 ~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg  249 (447)
T 3dw8_B          172 FANAHTYHINSISINS-DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKG  249 (447)
T ss_dssp             ECSCCSSCCCEEEECT-TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTS
T ss_pred             eccCCCcceEEEEEcC-CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCC
Confidence             367999999999999 89999999 799999999984 44444       367899999999999998 9999999999


Q ss_pred             cEEEEeCCCcccccceeecccCCCCCC---------CCCCceEEEcCCCcEEEEEeCCeEEEEecCC-ceEeeecccCCC
Q 001295          917 QLCVWSSDGWEKQKNRFLQIPTGRTPT---------AQSDTRVQFHQDQIHFLVVHETQLAIFETTK-LECVKQWVPRES  986 (1106)
Q Consensus       917 ~i~vwd~~~~~~~~~~~~~~~~~~~~~---------~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~-~~~~~~~~~~~h  986 (1106)
                      +|++||+.+++.... ......++...         ...|.+++|+|+|++|+++.++.|++||+.+ ++++..+.  +|
T Consensus       250 ~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~--~~  326 (447)
T 3dw8_B          250 TIRLCDMRASALCDR-HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQ--VH  326 (447)
T ss_dssp             CEEEEETTTCSSSCT-TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEE--SC
T ss_pred             eEEEEECcCCccccc-eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceee--cc
Confidence            999999998653211 01222232210         0168999999999999997669999999997 77777765  44


Q ss_pred             CCC---------------eeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCc------ccC-------------
Q 001295          987 SAP---------------ITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSA------YLP------------- 1032 (1106)
Q Consensus       987 ~~~---------------v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~------~~~------------- 1032 (1106)
                      ...               +..++|+|++++|++|+.||.|++||+.+++.+.......      ..+             
T Consensus       327 ~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (447)
T 3dw8_B          327 EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKD  406 (447)
T ss_dssp             GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTT
T ss_pred             ccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccc
Confidence            321               3459999999999999999999999999998764221000      000             


Q ss_pred             -----CCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEee
Q 001295         1033 -----AGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1069 (1106)
Q Consensus      1033 -----~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~ 1069 (1106)
                           .-.....+  +.++|+| ++++|++++.|+ +++|.-
T Consensus       407 ~~~~~~~~~~~~i--~~~~~~p-~~~~la~~~~~~-~~~~~~  444 (447)
T 3dw8_B          407 EISVDSLDFNKKI--LHTAWHP-KENIIAVATTNN-LYIFQD  444 (447)
T ss_dssp             CEEGGGCCTTSCC--CEEEECS-SSSEEEEECSSC-EEEEEC
T ss_pred             cccccccccCCce--eEEEECC-CCCEEEEEecce-eeeecc
Confidence                 00001123  3899999 689999988765 777763

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=3.7e-30  Score=294.13  Aligned_cols=252  Identities=15%  Similarity=0.231  Sum_probs=201.9

Q ss_pred             CCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc-CCCEEEE
Q 001295          351 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFGV  429 (1106)
Q Consensus       351 ~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~las  429 (1106)
                      .....++++|+...++++|+.||.|+|||+.......               .....+.+|.+.|.+++|+| ++++|++
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~---------------~~~~~~~~h~~~V~~~~~~p~~~~~l~s   99 (402)
T 2aq5_A           35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVD---------------KNVPLVCGHTAPVLDIAWCPHNDNVIAS   99 (402)
T ss_dssp             CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECC---------------TTCCCBCCCSSCEEEEEECTTCTTEEEE
T ss_pred             cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCC---------------CCCceEecCCCCEEEEEeCCCCCCEEEE
Confidence            4556799999988777788999999999996543221               01114689999999999999 9999999


Q ss_pred             EeCCCeEEEEEccCCcee----eeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEE--eccCCC
Q 001295          430 AYSRHIVQIYSYHGGDEV----RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF--EGHEAP  503 (1106)
Q Consensus       430 ~~~d~~v~iwd~~~~~~~----~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~h~~~  503 (1106)
                      |+.||+|+|||+.++...    .....+.+|...|.+++|+|++.. +|++++.|+.|++||+.+++.+..+  .+|...
T Consensus       100 ~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  178 (402)
T 2aq5_A          100 GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDT  178 (402)
T ss_dssp             EETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEECTTTCCSC
T ss_pred             EeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEEecCCCCCc
Confidence            999999999999987421    233468899999999999999844 7999999999999999999999999  889999


Q ss_pred             eEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEe-eCCCCe-eEEEEEecCCCeEEEeeeccceeEEEEcCCCCEE
Q 001295          504 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-EAPGRW-CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF  581 (1106)
Q Consensus       504 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~-v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l  581 (1106)
                      |.+++|++  ++.+|++++.||.|++||+++......+ ..+... +..+.|+                     |++.++
T Consensus       179 v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~l  235 (402)
T 2aq5_A          179 IYSVDWSR--DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFV---------------------SEGKIL  235 (402)
T ss_dssp             EEEEEECT--TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEEC---------------------STTEEE
T ss_pred             eEEEEECC--CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEc---------------------CCCcEE
Confidence            99999976  5579999999999999999987666555 444432 4445554                     444577


Q ss_pred             EEE---ECCCeEEEEECCCcce-eEEEccCCCCCCcCeEEEccCCCEEEE-EeCCCcEEEEEccCC
Q 001295          582 LAA---GDDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNKDGCLLAV-STNDNGIKILATSDG  642 (1106)
Q Consensus       582 ~~~---~~d~~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~~-~~~dg~i~iwd~~~~  642 (1106)
                      ++|   +.|+.|++||+.+++. +..... .+...+.+++|+|++++|++ |+.||.|++||+.++
T Consensus       236 ~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~  300 (402)
T 2aq5_A          236 TTGFSRMSERQVALWDTKHLEEPLSLQEL-DTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSE  300 (402)
T ss_dssp             EEEECTTCCEEEEEEETTBCSSCSEEEEC-CCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSS
T ss_pred             EEeccCCCCceEEEEcCccccCCceEEec-cCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCC
Confidence            887   6899999999988765 333322 22346899999999999975 557999999999876

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=1.7e-29  Score=282.88  Aligned_cols=260  Identities=10%  Similarity=0.130  Sum_probs=210.1

Q ss_pred             eccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc--C
Q 001295          346 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--D  423 (1106)
Q Consensus       346 ~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp--d  423 (1106)
                      ..+|.+.|++++|+|+|++ ||+|+.||.|+|||+.++......               ...+.+|...|.+++|+|  |
T Consensus         7 ~~gH~~~v~~~~~~~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~---------------~~~~~~~~~~v~~~~~~~~~d   70 (351)
T 3f3f_A            7 DSGHDDLVHDVVYDFYGRH-VATCSSDQHIKVFKLDKDTSNWEL---------------SDSWRAHDSSIVAIDWASPEY   70 (351)
T ss_dssp             ECCCSSCEEEEEECSSSSE-EEEEETTSEEEEEEECSSSCCEEE---------------EEEEECCSSCEEEEEECCGGG
T ss_pred             CcccccceeEEEEcCCCCE-EEEeeCCCeEEEEECCCCCCccee---------------cceeccCCCcEEEEEEcCCCC
Confidence            3469999999999999995 999999999999999876432210               013678999999999999  6


Q ss_pred             CCEEEEEeCCCeEEEEEccCCce------eeeeeeeccccCCeeEEEEcCC--CCceEEEEecCCCcEEEEeCCCCceeE
Q 001295          424 GSLFGVAYSRHIVQIYSYHGGDE------VRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNGAKQY  495 (1106)
Q Consensus       424 g~~las~~~d~~v~iwd~~~~~~------~~~~~~l~~h~~~V~~~~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~~~~  495 (1106)
                      +++|++++.||.|++||+.+++.      ......+.+|...|.+++|+|+  +.  ++++++.|+.|++||+.+++.+.
T Consensus        71 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~  148 (351)
T 3f3f_A           71 GRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYDALEPSDLR  148 (351)
T ss_dssp             CSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEECSSTTCTT
T ss_pred             CCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEecCCChHHhc
Confidence            99999999999999999998642      1334467899999999999999  88  89999999999999999887654


Q ss_pred             EEe-------------ccCCCeEEEecccc-CCceEEEEEecCCeEEEEeCCCCCc--eeEeeCCCCeeEEEEEecCCCe
Q 001295          496 IFE-------------GHEAPVYSVCPHHK-ENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTR  559 (1106)
Q Consensus       496 ~~~-------------~h~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~  559 (1106)
                      .+.             +|...+.+++|++. .++.++++++.|+.+.+|+......  ...+..|...|.+++|+|++.+
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~  228 (351)
T 3f3f_A          149 SWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGR  228 (351)
T ss_dssp             CCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSC
T ss_pred             cccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCC
Confidence            433             68889999999875 1347999999999998888776554  3445566666777766666510


Q ss_pred             EEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCc-----------------------------------------
Q 001295          560 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV-----------------------------------------  598 (1106)
Q Consensus       560 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-----------------------------------------  598 (1106)
                                       .+++|++++.||.|++||+.++                                         
T Consensus       229 -----------------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (351)
T 3f3f_A          229 -----------------WYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQ  291 (351)
T ss_dssp             -----------------SSEEEEEEETTSCEEEEEEEECC---------------------------------------C
T ss_pred             -----------------cceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeec
Confidence                             0037999999999999999764                                         


Q ss_pred             -----ceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295          599 -----QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       599 -----~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                           +.+..+..|  ...|.+++|+|++++|++++.||.|++|++.++
T Consensus       292 ~~~~~~~~~~~~~h--~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  338 (351)
T 3f3f_A          292 SNLQVELLSEHDDH--NGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS  338 (351)
T ss_dssp             CSEEEEEEEEECTT--SSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred             ccccccEEEEEecc--cccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence                 455556555  457999999999999999999999999999876

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=4.5e-29  Score=285.10  Aligned_cols=287  Identities=15%  Similarity=0.128  Sum_probs=226.7

Q ss_pred             EEEEEcCCCceEEE-eecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEec-CCCE
Q 001295          747 SRLIFTNSGNAILA-LASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSY  824 (1106)
Q Consensus       747 ~~~~~s~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~  824 (1106)
                      ..++++|+...+++ ++.+|.|++|++.......                  . ....+.  +|...|++++|+| ++++
T Consensus        38 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~------------------~-~~~~~~--~h~~~V~~~~~~p~~~~~   96 (402)
T 2aq5_A           38 GFCAVNPKFMALICEASGGGAFLVLPLGKTGRVD------------------K-NVPLVC--GHTAPVLDIAWCPHNDNV   96 (402)
T ss_dssp             CSEEECSSEEEEEBCCSSSCCEEEEETTCCEECC------------------T-TCCCBC--CCSSCEEEEEECTTCTTE
T ss_pred             CcEEECCCeEEEEEEEcCCCEEEEEECccCCCCC------------------C-CCceEe--cCCCCEEEEEeCCCCCCE
Confidence            35788888765554 6779999999975321100                  0 000122  3899999999999 9999


Q ss_pred             EEEEe-CCeEEEEEcCCC-------ceeeeecCCCCCeeEEEEecCCC-ceEEEeeCCCcEEEEEeecceEEEEe--cCc
Q 001295          825 VMSAS-GGKISLFNMMTF-------KTMATFMPPPPAATFLAFHPQDN-NIIAIGMDDSSIQIYNVRVDEVKSKL--KGH  893 (1106)
Q Consensus       825 l~~~s-dg~i~vwd~~~~-------~~~~~~~~~~~~v~~l~~s~~d~-~~la~g~~dg~v~iwd~~~~~~~~~l--~~h  893 (1106)
                      |++++ ||+|++||+.++       +.+..+.+|...|.+++|+| ++ ++|++|+.||.|++||+.+++.+..+  .+|
T Consensus        97 l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  175 (402)
T 2aq5_A           97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHP-TAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVH  175 (402)
T ss_dssp             EEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECS-SBTTEEEEEETTSCEEEEETTTTEEEEEECTTTC
T ss_pred             EEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECc-CCCCEEEEEcCCCEEEEEECCCCCccEEEecCCC
Confidence            99999 899999999987       56788899999999999999 65 79999999999999999999999999  889


Q ss_pred             ccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeccc-CCCCCCCCCCceEEEcCCCcEEEEE----eCCeEE
Q 001295          894 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP-TGRTPTAQSDTRVQFHQDQIHFLVV----HETQLA  968 (1106)
Q Consensus       894 ~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~s~dg~~l~~~----~d~~v~  968 (1106)
                      ...|++++|+|++.+|++++.|+.|++||+.+++.     +... .+|..  ..+..++|+|++++|+++    .|+.|+
T Consensus       176 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-----~~~~~~~~~~--~~~~~~~~~~~~~~l~~g~~~~~d~~i~  248 (402)
T 2aq5_A          176 PDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTV-----VAEKDRPHEG--TRPVHAVFVSEGKILTTGFSRMSERQVA  248 (402)
T ss_dssp             CSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE-----EEEEECSSCS--SSCCEEEECSTTEEEEEEECTTCCEEEE
T ss_pred             CCceEEEEECCCCCEEEEEecCCcEEEEeCCCCce-----eeeeccCCCC--CcceEEEEcCCCcEEEEeccCCCCceEE
Confidence            99999999999999999999999999999998653     2222 33332  247899999999999997    689999


Q ss_pred             EEecCCceEeeecccCCCCCCeeEEEECCCCCEEEE-EEcCCeEEEEEcCCcee-EEeeCCCcccCCCCCCCCccceEEE
Q 001295          969 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYA-CFLDATVCVFSAANLKL-RCRINPSAYLPAGVSSSNVHPLVIA 1046 (1106)
Q Consensus       969 i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t-~s~Dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~ 1046 (1106)
                      +||+.+++.........|...|.+++|+|++++|++ |+.||.|++||+.+++. +..+..   ..   +...+.  .++
T Consensus       249 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~---~~---~~~~v~--~~~  320 (402)
T 2aq5_A          249 LWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSM---FS---SKESQR--GMG  320 (402)
T ss_dssp             EEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEE---EC---CSSCCS--EEE
T ss_pred             EEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecc---cc---cCCccc--ceE
Confidence            999998765222222356788999999999999865 55799999999999874 333331   01   123355  899


Q ss_pred             EeCCCCCEEEEEeCCCcEEEEeecCCC
Q 001295         1047 AHPQEPNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus      1047 ~~~~d~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
                      |+| ++.++++  .|+.+++|++.+++
T Consensus       321 ~sp-~~~~~~s--~~~~~~~~~l~~~~  344 (402)
T 2aq5_A          321 YMP-KRGLEVN--KCEIARFYKLHERK  344 (402)
T ss_dssp             ECC-GGGSCGG--GTEEEEEEEEETTE
T ss_pred             Eec-cccccee--cceeEEEEEcCCCc
Confidence            999 6777664  57799999999865

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=7.4e-29  Score=281.28  Aligned_cols=250  Identities=12%  Similarity=0.076  Sum_probs=207.9

Q ss_pred             CCCCeeEEEEecCCCEEEEEe-CCeEEEEEcC--CCceeeeecCCCCCeeEEEEecCC--CceEEEeeCCCcEEEEEeec
Q 001295          809 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMM--TFKTMATFMPPPPAATFLAFHPQD--NNIIAIGMDDSSIQIYNVRV  883 (1106)
Q Consensus       809 ~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~--~~~~~~~~~~~~~~v~~l~~s~~d--~~~la~g~~dg~v~iwd~~~  883 (1106)
                      |...|++++|+|++++|++++ ||.|++||+.  +++.+..+.+|...|++++|++ +  +++|++|+.||.|++||+.+
T Consensus        10 h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~v~iwd~~~   88 (379)
T 3jrp_A           10 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLIWKEEN   88 (379)
T ss_dssp             CCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSCEEEEEEET
T ss_pred             CcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCC-CCCCCEEEEeccCCEEEEEEcCC
Confidence            999999999999999999998 8999999998  6677788999999999999997 5  89999999999999999999


Q ss_pred             ce--EEEEecCcccCeeEEEEecC--CCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcC-----
Q 001295          884 DE--VKSKLKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ-----  954 (1106)
Q Consensus       884 ~~--~~~~l~~h~~~V~~l~~s~d--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-----  954 (1106)
                      ++  .+..+.+|...|++++|+|+  +.+|++++.|+.|++||+.+........   ..+|.   ..+.+++|+|     
T Consensus        89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~---~~v~~~~~~~~~~~~  162 (379)
T 3jrp_A           89 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII---IDAHA---IGVNSASWAPATIEE  162 (379)
T ss_dssp             TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEE---EECCT---TCEEEEEECCCC---
T ss_pred             CceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEE---ecCCC---CceEEEEEcCccccc
Confidence            87  77888999999999999999  9999999999999999998864433222   22333   3789999999     


Q ss_pred             --------CCcEEEE-EeCCeEEEEecCCce----EeeecccCCCCCCeeEEEECCC---CCEEEEEEcCCeEEEEEcCC
Q 001295          955 --------DQIHFLV-VHETQLAIFETTKLE----CVKQWVPRESSAPITHATFSCD---SQLVYACFLDATVCVFSAAN 1018 (1106)
Q Consensus       955 --------dg~~l~~-~~d~~v~i~d~~~~~----~~~~~~~~~h~~~v~~l~~s~d---~~~l~t~s~Dg~i~vwd~~~ 1018 (1106)
                              ++.++++ +.|+.|++||++++.    .+..+  .+|...|++++|+|+   +.+|++++.||.|++||+.+
T Consensus       163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~  240 (379)
T 3jrp_A          163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL--EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN  240 (379)
T ss_dssp             -------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEE--CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred             cccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEE--ecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence                    6899988 589999999998764    33333  478999999999999   89999999999999999998


Q ss_pred             ceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCC
Q 001295         1019 LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus      1019 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
                      +.........  ...+| ...+.  .++|+| |+++|++++.||.|++|++..+.
T Consensus       241 ~~~~~~~~~~--~~~~~-~~~v~--~~~~s~-~g~~l~~~~~dg~i~iw~~~~~~  289 (379)
T 3jrp_A          241 EQGPWKKTLL--KEEKF-PDVLW--RASWSL-SGNVLALSGGDNKVTLWKENLEG  289 (379)
T ss_dssp             TTSCCEEEES--SSSCC-SSCEE--EEEECS-SSCCEEEEESSSSEEEEEEEETT
T ss_pred             CCccceeeee--ccccC-CCcEE--EEEEcC-CCCEEEEecCCCcEEEEeCCCCC
Confidence            7421111100  11111 23355  899999 78999999999999999998543

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=5.5e-28  Score=253.76  Aligned_cols=293  Identities=14%  Similarity=0.119  Sum_probs=210.5

Q ss_pred             eeEEEEc-CCCCceEEEEecCCCcEEEEeCCCC---ceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCC
Q 001295          460 VNDIAFS-HPNKQLCVITCGDDKTIKVWDATNG---AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL  535 (1106)
Q Consensus       460 V~~~~~s-~d~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  535 (1106)
                      +.++-|- +..+.+.++++++ ..|++|+..++   +.++++.+|..+|..+.+.++..+-+.++-+             
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-------------  107 (356)
T 2w18_A           42 VSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG-------------  107 (356)
T ss_dssp             EEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC-------------
T ss_pred             EeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeec-------------
Confidence            5566663 3445545677764 68999999999   8999999999999999988765432222222             


Q ss_pred             CceeEeeCCCCeeEEEEEecC----CCeEEEeeeccceeEEEEcCCCCEEEEEE--CCCeEEEEEC-CCcceeEEEccCC
Q 001295          536 GSRVDYEAPGRWCTTMAYSAD----GTRTYQGFRKRSLGVVQFDTTKNRFLAAG--DDFSIKFWDM-DSVQLLTSIDADG  608 (1106)
Q Consensus       536 ~~~~~~~~~~~~v~~~~~s~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d~~i~iwd~-~~~~~~~~~~~~~  608 (1106)
                            ..+...|.+++++||    ++.+..+.+...+..  + ++++.+.+++  .|+.|++|++ .+|+.+..+..+.
T Consensus       108 ------~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~--l-~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~  178 (356)
T 2w18_A          108 ------NLEIREIRALFCSSDDESEKQVLLKSGNIKAVLG--L-TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMP  178 (356)
T ss_dssp             ------SSSEEEEEEECC------CCEEEEEEEEEEEEEE--E-TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECC
T ss_pred             ------cccccceEEEEECCCccccccEEEeCCCeEEEEe--c-CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCC
Confidence                  223456889999999    877777665544444  3 5565555533  5999999999 5588888887774


Q ss_pred             CCCCcCeEEEcc---CCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhccccccc
Q 001295          609 GLPASPRIRFNK---DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLAD  685 (1106)
Q Consensus       609 ~~~~v~~v~~s~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  685 (1106)
                      .  .+..++|++   ++.+|++++.|++|+|||+.++ ++++.+.+|..                               
T Consensus       179 ~--~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG-k~l~tL~g~~~-------------------------------  224 (356)
T 2w18_A          179 P--EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG-QLLKKMHIDDS-------------------------------  224 (356)
T ss_dssp             C--SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC-CEEEEEECCC--------------------------------
T ss_pred             C--ceeeEEeeccCCCCceEEEecCCCcEEEEECCCC-cEEEEEcCCCc-------------------------------
Confidence            4  788899999   7899999999999999999998 55554432211                               


Q ss_pred             ccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCc
Q 001295          686 RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNA  765 (1106)
Q Consensus       686 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  765 (1106)
                                                                              +...+.+++|+|+|.++++++.+.
T Consensus       225 --------------------------------------------------------~v~~v~~vafSpdG~~lvs~s~~~  248 (356)
T 2w18_A          225 --------------------------------------------------------YQASVCHKAYSEMGLLFIVLSHPC  248 (356)
T ss_dssp             ----------------------------------------------------------CCCEEEEEEETTEEEEEEC---
T ss_pred             --------------------------------------------------------ceeeeEEEEECCCCCEEEEeccCC
Confidence                                                                    223577889999998777665431


Q ss_pred             eEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCcee
Q 001295          766 IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM  844 (1106)
Q Consensus       766 ~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~  844 (1106)
                      .  +|                                                     .+++|+ |++|++||..+++.+
T Consensus       249 ~--~w-----------------------------------------------------~laSGs~D~tIklWd~~tgk~l  273 (356)
T 2w18_A          249 A--KE-----------------------------------------------------SESLRSPVFQLIVINPKTTLSV  273 (356)
T ss_dssp             ----------------------------------------------------------------CCEEEEEEETTTTEEE
T ss_pred             C--cc-----------------------------------------------------eeeccCCCcEEEEEECCCCEEE
Confidence            1  11                                                     356777 899999999999887


Q ss_pred             eee-----cCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCee-EEEEecCCCEEEEEcCCCcE
Q 001295          845 ATF-----MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT-GLAFSHALNVLVSSGADSQL  918 (1106)
Q Consensus       845 ~~~-----~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~-~l~~s~d~~~l~s~s~Dg~i  918 (1106)
                      ..+     .+|...+.+..+   ++.++|+|+.||+|+|||+.+++++.++.+|...+. +++|||||++|+||+.|++|
T Consensus       274 ~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TI  350 (356)
T 2w18_A          274 GVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNI  350 (356)
T ss_dssp             EEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCE
T ss_pred             EEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcE
Confidence            665     366655444444   367999999999999999999999999999988766 58999999999999999999


Q ss_pred             EEEeC
Q 001295          919 CVWSS  923 (1106)
Q Consensus       919 ~vwd~  923 (1106)
                      +|||+
T Consensus       351 klWd~  355 (356)
T 2w18_A          351 FVYHY  355 (356)
T ss_dssp             EEEEE
T ss_pred             EEecC
Confidence            99986

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=1.2e-28  Score=283.64  Aligned_cols=267  Identities=13%  Similarity=0.227  Sum_probs=213.4

Q ss_pred             eeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc
Q 001295          343 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  422 (1106)
Q Consensus       343 ~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp  422 (1106)
                      ....+.|.+.|++++|+|++..+||+|+.||.|+|||+.+......         ..........+.+|...|.+++|+|
T Consensus       121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~---------~~~~~~~~~~~~~h~~~v~~l~~~~  191 (430)
T 2xyi_A          121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE---------PSGECQPDLRLRGHQKEGYGLSWNP  191 (430)
T ss_dssp             EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC---------TTCCCCCSEEEECCSSCCCCEEECT
T ss_pred             EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC---------ccccCCCcEEecCCCCCeEEEEeCC
Confidence            4566779999999999998555799999999999999976211000         0000001113679999999999999


Q ss_pred             CCC-EEEEEeCCCeEEEEEccCCce----eeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCC---cee
Q 001295          423 DGS-LFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG---AKQ  494 (1106)
Q Consensus       423 dg~-~las~~~d~~v~iwd~~~~~~----~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~~~  494 (1106)
                      ++. +|++|+.||.|++||+.++..    +.....+.+|...|.+++|+|++.. +|++++.|+.|++||++++   +.+
T Consensus       192 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d~~~~~~~~~~  270 (430)
T 2xyi_A          192 NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWDTRNNNTSKPS  270 (430)
T ss_dssp             TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEETTCSCSSSCS
T ss_pred             CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEECCCCCCCcce
Confidence            998 999999999999999987432    2224467789999999999995544 8999999999999999987   678


Q ss_pred             EEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCC-CceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEE
Q 001295          495 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  573 (1106)
Q Consensus       495 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~  573 (1106)
                      ..+..|...|++++|++... .++++|+.||.|++||++.. .....+..|...|.+++|+|+++               
T Consensus       271 ~~~~~~~~~v~~i~~~p~~~-~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~---------------  334 (430)
T 2xyi_A          271 HTVDAHTAEVNCLSFNPYSE-FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE---------------  334 (430)
T ss_dssp             EEEECCSSCEEEEEECSSCT-TEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCT---------------
T ss_pred             eEeecCCCCeEEEEeCCCCC-CEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCC---------------
Confidence            88889999999999977543 47999999999999999984 45667777777777777777664               


Q ss_pred             EcCCCCEEEEEECCCeEEEEECCC--------------cceeEEEccCCCCCCcCeEEEccCCC-EEEEEeCCCcEEEEE
Q 001295          574 FDTTKNRFLAAGDDFSIKFWDMDS--------------VQLLTSIDADGGLPASPRIRFNKDGC-LLAVSTNDNGIKILA  638 (1106)
Q Consensus       574 ~~~~~~~l~~~~~d~~i~iwd~~~--------------~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iwd  638 (1106)
                           .++++++.|+.|++||+..              .+.+..+.+|  ...|.+++|+|++. +|++++.||.|++|+
T Consensus       335 -----~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~  407 (430)
T 2xyi_A          335 -----TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH--TAKISDFSWNPNEPWIICSVSEDNIMQVWQ  407 (430)
T ss_dssp             -----TEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCC--SSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred             -----CEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCC--CCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence                 2588999999999999976              2455555544  45799999999999 999999999999999


Q ss_pred             ccCC
Q 001295          639 TSDG  642 (1106)
Q Consensus       639 ~~~~  642 (1106)
                      +...
T Consensus       408 ~~~~  411 (430)
T 2xyi_A          408 MAEN  411 (430)
T ss_dssp             ECHH
T ss_pred             cccc
Confidence            8654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=7.1e-28  Score=278.63  Aligned_cols=356  Identities=15%  Similarity=0.206  Sum_probs=256.0

Q ss_pred             CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEE---EccCCC
Q 001295          349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI---WSPDGS  425 (1106)
Q Consensus       349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~---~spdg~  425 (1106)
                      ....|..+.|+|....++..+......+++...                             ....+..++   |+|+++
T Consensus        26 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~g~~~~~~p~~~~~~~   76 (433)
T 3bws_A           26 NGTEIVKFSIHPYKGTVIRLGEEILPFKVLEMD-----------------------------KNIALVEMAIPVYKDEKE   76 (433)
T ss_dssp             -CEEEEEEEEECCTTCEEEETTEECCEEEEEEE-----------------------------TTEEEEEEEEECCCTTCC
T ss_pred             CCcEEEEEecccccCceEEcCceecceeeeecc-----------------------------cCCccEEEEEeeccCCCc
Confidence            456788899999765444432222222232221                             223455555   666655


Q ss_pred             EEEEE--------------eCCCeEEEEEcc--CCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCC
Q 001295          426 LFGVA--------------YSRHIVQIYSYH--GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT  489 (1106)
Q Consensus       426 ~las~--------------~~d~~v~iwd~~--~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~  489 (1106)
                      .++..              +.++.+.||.++  ++. ......+..+ ..+.+++|+|++.  ++++++.|+.|++||+.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~~~~~-~~~~~~~~s~~~~--~~~~~~~~~~i~~~d~~  152 (433)
T 3bws_A           77 IELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGIT-HRFISRFKTG-FQPKSVRFIDNTR--LAIPLLEDEGMDVLDIN  152 (433)
T ss_dssp             EEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCS-EEEEEEEECS-SCBCCCEESSSSE--EEEEBTTSSSEEEEETT
T ss_pred             EEEEEEccccCcceeeecccCCCceEEEEECCCCCc-ceEEEEEcCC-CCceEEEEeCCCe--EEEEeCCCCeEEEEECC
Confidence            55433              333433555543  342 2222344444 4567999999665  78889999999999999


Q ss_pred             CCceeE-----EEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEee
Q 001295          490 NGAKQY-----IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF  564 (1106)
Q Consensus       490 ~~~~~~-----~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~  564 (1106)
                      +++.+.     .+.+|...|.+++|++  ++.++++++.|+.|++||+++.+....+..+...+.+++|+|+++      
T Consensus       153 ~g~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~------  224 (433)
T 3bws_A          153 SGQTVRLSPPEKYKKKLGFVETISIPE--HNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRD------  224 (433)
T ss_dssp             TCCEEEECCCHHHHTTCCEEEEEEEGG--GTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTT------
T ss_pred             CCeEeeecCcccccccCCceeEEEEcC--CCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCC------
Confidence            999887     4457889999999854  458999999999999999998877777777777777777777665      


Q ss_pred             eccceeEEEEcCCCCEEE-EEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEe--------CCCcEE
Q 001295          565 RKRSLGVVQFDTTKNRFL-AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST--------NDNGIK  635 (1106)
Q Consensus       565 ~~~~i~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~--------~dg~i~  635 (1106)
                                     +++ +++.++.|++||+.+++.+..+..+.   .+.+++|+|+++++++++        .||.|+
T Consensus       225 ---------------~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~  286 (433)
T 3bws_A          225 ---------------LVYCSNWISEDISVIDRKTKLEIRKTDKIG---LPRGLLLSKDGKELYIAQFSASNQESGGGRLG  286 (433)
T ss_dssp             ---------------EEEEEETTTTEEEEEETTTTEEEEECCCCS---EEEEEEECTTSSEEEEEEEESCTTCSCCEEEE
T ss_pred             ---------------EEEEEecCCCcEEEEECCCCcEEEEecCCC---CceEEEEcCCCCEEEEEECCCCccccCCCeEE
Confidence                           564 45579999999999999888876543   488999999999999887        356666


Q ss_pred             EEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCC
Q 001295          636 ILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESN  715 (1106)
Q Consensus       636 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  715 (1106)
                      +||+.++. ....                                                                   
T Consensus       287 ~~d~~~~~-~~~~-------------------------------------------------------------------  298 (433)
T 3bws_A          287 IYSMDKEK-LIDT-------------------------------------------------------------------  298 (433)
T ss_dssp             EEETTTTE-EEEE-------------------------------------------------------------------
T ss_pred             EEECCCCc-EEee-------------------------------------------------------------------
Confidence            66654431 0000                                                                   


Q ss_pred             CceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCC
Q 001295          716 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPP  795 (1106)
Q Consensus       716 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~  795 (1106)
                                                                +                                     
T Consensus       299 ------------------------------------------~-------------------------------------  299 (433)
T 3bws_A          299 ------------------------------------------I-------------------------------------  299 (433)
T ss_dssp             ------------------------------------------E-------------------------------------
T ss_pred             ------------------------------------------c-------------------------------------
Confidence                                                      0                                     


Q ss_pred             CCCccccccCCCCCCCCeeEEEEecCCCEEEEE-e-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeC-
Q 001295          796 SGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA-S-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-  872 (1106)
Q Consensus       796 ~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~-s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~-  872 (1106)
                                  .+...+.+++|+|+++.++++ + ++.|++||+.+++....+. +...+.+++|+| ++++|++++. 
T Consensus       300 ------------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~-dg~~l~~~~~~  365 (433)
T 3bws_A          300 ------------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSP-DGKYLYVSCRG  365 (433)
T ss_dssp             ------------EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECT-TSSEEEEEECC
T ss_pred             ------------cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcC-CCCEEEEEecC
Confidence                        022245677888888755444 4 7899999999888877776 667799999999 8888888776 


Q ss_pred             --------------CCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcC-CCcEEEEeCCC
Q 001295          873 --------------DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDG  925 (1106)
Q Consensus       873 --------------dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-Dg~i~vwd~~~  925 (1106)
                                    ||.|++||+.+++.+..+..+ ..+.+++|+|||++|++++. |++|++|+++.
T Consensus       366 ~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          366 PNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             CCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             CCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence                          579999999999998888764 57899999999999988775 99999999864

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=5.6e-27  Score=266.97  Aligned_cols=329  Identities=9%  Similarity=0.099  Sum_probs=243.3

Q ss_pred             CEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCe
Q 001295          425 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV  504 (1106)
Q Consensus       425 ~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v  504 (1106)
                      .++++++.|+.|++||+.+++.+.   .+..|. .+.+++|+|+++. ++++++.|+.|++||+.+++.+..+..+. .+
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~---~~~~~~-~~~~~~~s~dg~~-l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v   76 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTA---TIPVGS-NPMGAVISPDGTK-VYVANAHSNDVSIIDTATNNVIATVPAGS-SP   76 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEE---EEECSS-SEEEEEECTTSSE-EEEEEGGGTEEEEEETTTTEEEEEEECSS-SE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEE---EeecCC-CcceEEECCCCCE-EEEECCCCCeEEEEECCCCeEEEEEECCC-Cc
Confidence            467888999999999999987665   455554 5899999999994 45788899999999999999999888665 89


Q ss_pred             EEEeccccCCceEE-EEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEE-E
Q 001295          505 YSVCPHHKENIQFI-FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF-L  582 (1106)
Q Consensus       505 ~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l-~  582 (1106)
                      .+++|+++.  ++| ++++.++.|++||+.+.+....+..+ ..+.+++|+|+                     ++++ +
T Consensus        77 ~~~~~spdg--~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~d---------------------g~~l~~  132 (391)
T 1l0q_A           77 QGVAVSPDG--KQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPD---------------------GKKLYV  132 (391)
T ss_dssp             EEEEECTTS--SEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTT---------------------SSEEEE
T ss_pred             cceEECCCC--CEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCC---------------------CCEEEE
Confidence            999987644  555 56667899999999986655544433 23445555554                     4456 6


Q ss_pred             EEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEE-EEEeCCCcEEEEEccCCchhhhhhcccccccccCCC
Q 001295          583 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL-AVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE  661 (1106)
Q Consensus       583 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  661 (1106)
                      +++.++.|++||+.+++.+..+..+.   .+.+++|+|+++++ ++++.++.|++||+.++. ....+            
T Consensus       133 ~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~-~~~~~------------  196 (391)
T 1l0q_A          133 TNNGDKTVSVINTVTKAVINTVSVGR---SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS-VIDTV------------  196 (391)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEE------------
T ss_pred             EeCCCCEEEEEECCCCcEEEEEecCC---CcceEEECCCCCEEEEEeCCCCEEEEEECCCCe-EEEEE------------
Confidence            77789999999999999988887653   36899999999887 567788999999986551 00000            


Q ss_pred             CCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccc
Q 001295          662 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL  741 (1106)
Q Consensus       662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~  741 (1106)
                                                                                                      
T Consensus       197 --------------------------------------------------------------------------------  196 (391)
T 1l0q_A          197 --------------------------------------------------------------------------------  196 (391)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecC
Q 001295          742 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  821 (1106)
Q Consensus       742 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~  821 (1106)
                                                                                        .+...+.+++|+|+
T Consensus       197 ------------------------------------------------------------------~~~~~~~~~~~~~~  210 (391)
T 1l0q_A          197 ------------------------------------------------------------------KVEAAPSGIAVNPE  210 (391)
T ss_dssp             ------------------------------------------------------------------ECSSEEEEEEECTT
T ss_pred             ------------------------------------------------------------------ecCCCccceEECCC
Confidence                                                                              02233556777777


Q ss_pred             CCEEEEEe----CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceE-EEeeCCCcEEEEEeecceEEEEecCcccC
Q 001295          822 DSYVMSAS----GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNII-AIGMDDSSIQIYNVRVDEVKSKLKGHSKR  896 (1106)
Q Consensus       822 ~~~l~~~s----dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~l-a~g~~dg~v~iwd~~~~~~~~~l~~h~~~  896 (1106)
                      ++++++++    ++.|++||+.+++.+..+..+. .+.+++|+| ++++| ++++.|+.|++||+.+++++..+..|..+
T Consensus       211 g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~  288 (391)
T 1l0q_A          211 GTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTP-DGKKVYVALSFXNTVSVIDTATNTITATMAVGKNP  288 (391)
T ss_dssp             SSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred             CCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEcc-CCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCC
Confidence            77666664    5789999998888888887654 589999999 77665 67788999999999999999888776554


Q ss_pred             ee---EEE------------EecCC----------CEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEE
Q 001295          897 IT---GLA------------FSHAL----------NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ  951 (1106)
Q Consensus       897 V~---~l~------------~s~d~----------~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  951 (1106)
                      ..   .+.            |+.+.          ..+.+.+.|.++++|++..+...      ..        ......
T Consensus       289 ~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~------~~--------~~~~~~  354 (391)
T 1l0q_A          289 YASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSS------KK--------QNPTHT  354 (391)
T ss_dssp             ECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEE------CS--------SSCEEC
T ss_pred             CccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCccc------Cc--------CCCeEE
Confidence            22   122            32221          34666777899999999875421      00        123468


Q ss_pred             EcCCCcEEEE
Q 001295          952 FHQDQIHFLV  961 (1106)
Q Consensus       952 ~s~dg~~l~~  961 (1106)
                      |+++|.|.+.
T Consensus       355 ~~~~g~y~~~  364 (391)
T 1l0q_A          355 YSETGIYTVR  364 (391)
T ss_dssp             CSSCEEEEEE
T ss_pred             eCCCceEEEE
Confidence            9999999876

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=5e-27  Score=267.37  Aligned_cols=227  Identities=15%  Similarity=0.129  Sum_probs=179.7

Q ss_pred             CeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEE-EEEeCCCeEEEEEc
Q 001295          363 QTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF-GVAYSRHIVQIYSY  441 (1106)
Q Consensus       363 ~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-as~~~d~~v~iwd~  441 (1106)
                      ++++++++.|+.|++||+.+++.+..                   +..|. .+.+++|+|+|++| ++++.|+.|++||+
T Consensus         2 ~~l~vs~~~d~~v~v~d~~~~~~~~~-------------------~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~   61 (391)
T 1l0q_A            2 TFAYIANSESDNISVIDVTSNKVTAT-------------------IPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDT   61 (391)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEE-------------------EECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEET
T ss_pred             CEEEEEcCCCCEEEEEECCCCeEEEE-------------------eecCC-CcceEEECCCCCEEEEECCCCCeEEEEEC
Confidence            35799999999999999999887653                   34454 58999999999987 56778999999999


Q ss_pred             cCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEE-EE
Q 001295          442 HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI-FS  520 (1106)
Q Consensus       442 ~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s  520 (1106)
                      .+++.+.   .+..|. .+.+++|+|+++. ++++++.++.|++||+.+++.+..+..| ..+.+++|+++.  +.+ ++
T Consensus        62 ~~~~~~~---~~~~~~-~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg--~~l~~~  133 (391)
T 1l0q_A           62 ATNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDG--KKLYVT  133 (391)
T ss_dssp             TTTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTS--SEEEEE
T ss_pred             CCCeEEE---EEECCC-CccceEECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCC--CEEEEE
Confidence            9988765   344343 8999999999994 4467778899999999999998888754 568899986554  555 78


Q ss_pred             EecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEE-EEEECCCeEEEEECCCcc
Q 001295          521 TALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF-LAAGDDFSIKFWDMDSVQ  599 (1106)
Q Consensus       521 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~  599 (1106)
                      ++.|+.|++||+.+.+....+..+. .+..++|+|+                     ++++ ++++.++.|++||+.+++
T Consensus       134 ~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~d---------------------g~~l~~~~~~~~~v~~~d~~~~~  191 (391)
T 1l0q_A          134 NNGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPD---------------------GTKVYVANFDSMSISVIDTVTNS  191 (391)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTT---------------------SSEEEEEETTTTEEEEEETTTTE
T ss_pred             eCCCCEEEEEECCCCcEEEEEecCC-CcceEEECCC---------------------CCEEEEEeCCCCEEEEEECCCCe
Confidence            8889999999998776555554432 2344555554                     4456 567788999999999998


Q ss_pred             eeEEEccCCCCCCcCeEEEccCCCEEEEEe---CCCcEEEEEccCC
Q 001295          600 LLTSIDADGGLPASPRIRFNKDGCLLAVST---NDNGIKILATSDG  642 (1106)
Q Consensus       600 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~---~dg~i~iwd~~~~  642 (1106)
                      .+..+..+   ..+.+++|+|+++++++++   .++.|++||+.++
T Consensus       192 ~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~  234 (391)
T 1l0q_A          192 VIDTVKVE---AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN  234 (391)
T ss_dssp             EEEEEECS---SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred             EEEEEecC---CCccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence            88887643   2578999999999999888   6899999998765

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=9.6e-28  Score=278.26  Aligned_cols=257  Identities=16%  Similarity=0.080  Sum_probs=201.9

Q ss_pred             CCcEEEEEecCCCeEEEEEeccCcEEEEecCCcc---eeEEeeeeeeccCcC----------------------------
Q 001295          351 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE---RLVLRNFKVWDLGAC----------------------------  399 (1106)
Q Consensus       351 ~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~---~~~~~~~~~~d~~~~----------------------------  399 (1106)
                      .++.+++|+|||+ +|+++ .++.|++||+.+|+   .+..     |.....                            
T Consensus         5 ~p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (450)
T 2vdu_B            5 HPLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAGK-----WSDDFDKIQESRNTTAKEQQGQSSENENENKKLK   77 (450)
T ss_dssp             CCCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEEE-----EECCC-----------------------------
T ss_pred             ccEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeeee-----cCCccccccccccccchhhccccccccccccccc
Confidence            5789999999999 46554 47899999999998   4332     211000                            


Q ss_pred             ------------CccccccccCCCCcCeEEEEEccCCCEE-EEEeCCCeEEEEEcc--CCceeeeeeeeccccCCeeEEE
Q 001295          400 ------------SMPLQAALVKDPGVSVNRVIWSPDGSLF-GVAYSRHIVQIYSYH--GGDEVRQHLEIDAHVGGVNDIA  464 (1106)
Q Consensus       400 ------------~~~~~~~~~~~h~~~V~~l~~spdg~~l-as~~~d~~v~iwd~~--~~~~~~~~~~l~~h~~~V~~~~  464 (1106)
                                  ..........+|.+.|.+++|+|+|++| ++++.||.|+|||+.  +++.+..+. ...|...|.+++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~  156 (450)
T 2vdu_B           78 SNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-RFCFSKRPNAIS  156 (450)
T ss_dssp             ----------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-EEECSSCEEEEE
T ss_pred             cCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-cccCCCCceEEE
Confidence                        0000111234677789999999999996 889999999999999  777665322 136778999999


Q ss_pred             EcCCCCceEEEEecCCCcEEEEeCCCCceeE----EEeccCCCeEEEecccc-CCceEEEEEecCCeEEEEeCCCCCcee
Q 001295          465 FSHPNKQLCVITCGDDKTIKVWDATNGAKQY----IFEGHEAPVYSVCPHHK-ENIQFIFSTALDGKIKAWLYDNLGSRV  539 (1106)
Q Consensus       465 ~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~----~~~~h~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~  539 (1106)
                      |+|+++  +|++|+.|+.|++|++.+++...    .+.+|...|.+++|+++ ..+.+|++|+.|+.|++||+++.....
T Consensus       157 ~sp~~~--~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~  234 (450)
T 2vdu_B          157 IAEDDT--TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD  234 (450)
T ss_dssp             ECTTSS--EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE
T ss_pred             EcCCCC--EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee
Confidence            999999  89999999999999998877554    78889999999999876 225799999999999999999877766


Q ss_pred             E-eeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccC-----------
Q 001295          540 D-YEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD-----------  607 (1106)
Q Consensus       540 ~-~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----------  607 (1106)
                      . +..|...|.+++|+ +++                     +|++++.|+.|++||+.+++.+..+..+           
T Consensus       235 ~~~~~h~~~v~~~~~s-d~~---------------------~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~  292 (450)
T 2vdu_B          235 KWLFGHKHFVSSICCG-KDY---------------------LLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQH  292 (450)
T ss_dssp             EECCCCSSCEEEEEEC-STT---------------------EEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTS
T ss_pred             eeecCCCCceEEEEEC-CCC---------------------EEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcc
Confidence            5 44666667777666 554                     7999999999999999999988887532           


Q ss_pred             ------------CCCCCcCeEEEccCCCEEEEEe-CCCcEEEEEc
Q 001295          608 ------------GGLPASPRIRFNKDGCLLAVST-NDNGIKILAT  639 (1106)
Q Consensus       608 ------------~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~  639 (1106)
                                  .....|.+++|+|++++|++++ .++.|++|++
T Consensus       293 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          293 LAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             BC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred             cccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence                        1123578999999999999999 8999999998

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=7.1e-28  Score=252.90  Aligned_cols=277  Identities=11%  Similarity=0.144  Sum_probs=204.6

Q ss_pred             CccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccc
Q 001295          707 KPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATAS  786 (1106)
Q Consensus       707 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~  786 (1106)
                      +..+.......|++|+......-.....+    ..|+.+|..+.+.||..-|++..-..                     
T Consensus        54 ~~~~~~~~~~~v~lw~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~---------------------  108 (356)
T 2w18_A           54 EPCIITACEDVVSLWKALDAWQWEKLYTW----HFAEVPVLQIVPVPDVYNLVCVALGN---------------------  108 (356)
T ss_dssp             EEEEEEEESSEEEEEEESSSSBEEEEEEE----ECCSSCEEEECCCTTCCSCEEEEECS---------------------
T ss_pred             ccEEEEeccceEEEcccCCCccceeeEEE----eccCceeEEEEEcCcccceeeeeecc---------------------
Confidence            34455566689999999875322333333    34778999999999876555443220                     


Q ss_pred             cCccccCCCCCCccccccCCCCCCCCeeEEEEecC----CCEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecC
Q 001295          787 VAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN----DSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ  862 (1106)
Q Consensus       787 ~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~----~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~  862 (1106)
                                           -+...|.+++++||    ++++++++ ..+++|++.                       
T Consensus       109 ---------------------~~~~~v~sla~spd~~~~~~~l~s~g-~~~~v~~l~-----------------------  143 (356)
T 2w18_A          109 ---------------------LEIREIRALFCSSDDESEKQVLLKSG-NIKAVLGLT-----------------------  143 (356)
T ss_dssp             ---------------------SSEEEEEEECC------CCEEEEEEE-EEEEEEEET-----------------------
T ss_pred             ---------------------ccccceEEEEECCCccccccEEEeCC-CeEEEEecC-----------------------
Confidence                                 15667899999999    99999876 347778542                       


Q ss_pred             CCceEEEee--CCCcEEEEEee-cceEEEEecCcccCeeEEEEec---CCCEEEEEcCCCcEEEEeCCCcccccceeecc
Q 001295          863 DNNIIAIGM--DDSSIQIYNVR-VDEVKSKLKGHSKRITGLAFSH---ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQI  936 (1106)
Q Consensus       863 d~~~la~g~--~dg~v~iwd~~-~~~~~~~l~~h~~~V~~l~~s~---d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~  936 (1106)
                      +++++.+++  .|+.|++|++. +|+.+..+.+|...++.++|++   ++.+|||++.|++|+|||+++++.     +..
T Consensus       144 ~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~-----l~t  218 (356)
T 2w18_A          144 KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQL-----LKK  218 (356)
T ss_dssp             TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCE-----EEE
T ss_pred             CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcE-----EEE
Confidence            455555533  57888888884 4777778889999999999999   789999999999999999999764     333


Q ss_pred             cCCCCCCCCCCceEEEcCCCcEEEE-------------EeCCeEEEEecCCceEeeecc---cCCCCCCeeEEEECCCCC
Q 001295          937 PTGRTPTAQSDTRVQFHQDQIHFLV-------------VHETQLAIFETTKLECVKQWV---PRESSAPITHATFSCDSQ 1000 (1106)
Q Consensus       937 ~~~~~~~~~~i~~~~~s~dg~~l~~-------------~~d~~v~i~d~~~~~~~~~~~---~~~h~~~v~~l~~s~d~~ 1000 (1106)
                      +.++......+.+++|+|||+++++             +.|++|++||..+++++..+.   ..+|...+.+..++  +.
T Consensus       219 L~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~  296 (356)
T 2w18_A          219 MHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DH  296 (356)
T ss_dssp             EECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TT
T ss_pred             EcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CC
Confidence            3333222246778899999998743             367899999999999876652   34776666655554  88


Q ss_pred             EEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeec
Q 001295         1001 LVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1070 (1106)
Q Consensus      1001 ~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~ 1070 (1106)
                      ++|+|+.|++|+|||+.+++.+..+.       +|+...+.  .++|+| ||++|++|+.|++|+|||+.
T Consensus       297 ~lASgS~DgTIkIWDl~tGk~l~tL~-------gH~~~vvs--~vafSP-DG~~LaSGS~D~TIklWd~~  356 (356)
T 2w18_A          297 CAAAILTSGTIAIWDLLLGQCTALLP-------PVSDQHWS--FVKWSG-TDSHLLAGQKDGNIFVYHYS  356 (356)
T ss_dssp             EEEEEETTSCEEEEETTTCSEEEEEC-------CC--CCCC--EEEECS-SSSEEEEECTTSCEEEEEEC
T ss_pred             EEEEEcCCCcEEEEECCCCcEEEEec-------CCCCCeEE--EEEECC-CCCEEEEEECCCcEEEecCC
Confidence            99999999999999999999999887       44444344  589999 79999999999999999963

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.2e-28  Score=301.47  Aligned_cols=255  Identities=16%  Similarity=0.204  Sum_probs=206.6

Q ss_pred             ccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCc--ceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccC-
Q 001295          347 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR--ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD-  423 (1106)
Q Consensus       347 ~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~--~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd-  423 (1106)
                      -+|.+.|++++|+|+|++ +++|+.||+|+|||+.++  +.+.                   .+.+|.+.|++++|+|+ 
T Consensus         6 ~gH~~~V~~l~~s~dg~~-latg~~dg~I~vwd~~~~~~~~~~-------------------~l~~h~~~V~~l~~s~~~   65 (753)
T 3jro_A            6 NAHNELIHDAVLDYYGKR-LATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAHPK   65 (753)
T ss_dssp             --CCCCEEEECCCSSSCC-EEEEETTTEEEEEEEETTEEEEEE-------------------EECCCSSCEEEEEECCTT
T ss_pred             ccCcceeEEEEECCCCCe-EEEEECCCcEEEEecCCCCCccce-------------------eccCCcCceEEEEecCCC
Confidence            359999999999999995 999999999999999843  3322                   36899999999999998 


Q ss_pred             -CCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCC--CCceEEEEecCCCcEEEEeCCCC--ceeEEEe
Q 001295          424 -GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNG--AKQYIFE  498 (1106)
Q Consensus       424 -g~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d--~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~  498 (1106)
                       +++|++|+.||+|++||+.+++. .....+.+|...|.+++|+|+  +.  ++++|+.||.|++||+.++  .....+.
T Consensus        66 ~~~~l~s~s~Dg~I~vwd~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~--~l~sgs~dg~I~vwdl~~~~~~~~~~~~  142 (753)
T 3jro_A           66 FGTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIIID  142 (753)
T ss_dssp             SCSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCSSSCCCCEEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcc-cccccccCCCCCeEEEEECCCCCCC--EEEEEeCCCcEEEEEeecCCCcceeEee
Confidence             99999999999999999998762 233467889999999999999  88  8999999999999999887  3456778


Q ss_pred             ccCCCeEEEeccccC-----------CceEEEEEecCCeEEEEeCCCCCce----eEeeCCCCeeEEEEEecCCCeEEEe
Q 001295          499 GHEAPVYSVCPHHKE-----------NIQFIFSTALDGKIKAWLYDNLGSR----VDYEAPGRWCTTMAYSADGTRTYQG  563 (1106)
Q Consensus       499 ~h~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~v~~~~~s~~~~~~~~~  563 (1106)
                      +|...|.+++|++..           ++.++++|+.||.|++||+++....    ..+..|...|.+++|+|++.     
T Consensus       143 ~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~-----  217 (753)
T 3jro_A          143 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL-----  217 (753)
T ss_dssp             CCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS-----
T ss_pred             cCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCC-----
Confidence            899999999998742           4679999999999999999876432    24445555555555555510     


Q ss_pred             eeccceeEEEEcCCCCEEEEEECCCeEEEEECCCccee---EEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEcc
Q 001295          564 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL---TSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS  640 (1106)
Q Consensus       564 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~  640 (1106)
                                   .+.++++++.||.|++||+.+++..   .......+...|.+++|+|+|+++++++.||.|++|++.
T Consensus       218 -------------~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~  284 (753)
T 3jro_A          218 -------------LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (753)
T ss_dssp             -------------SSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred             -------------CCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence                         0457999999999999999886421   112223345679999999999999999999999999998


Q ss_pred             CC
Q 001295          641 DG  642 (1106)
Q Consensus       641 ~~  642 (1106)
                      ++
T Consensus       285 ~~  286 (753)
T 3jro_A          285 LE  286 (753)
T ss_dssp             SS
T ss_pred             CC
Confidence            65

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.2e-27  Score=275.21  Aligned_cols=247  Identities=9%  Similarity=0.033  Sum_probs=201.4

Q ss_pred             CCCCeeEEEEecCCCEE-EEEe-CCeEEEEEcC--CCceeeeec--CCCCCeeEEEEecCCCceEEEeeCCCcEEEEEee
Q 001295          809 PEEAVPCFALSKNDSYV-MSAS-GGKISLFNMM--TFKTMATFM--PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR  882 (1106)
Q Consensus       809 ~~~~v~~l~~s~~~~~l-~~~s-dg~i~vwd~~--~~~~~~~~~--~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~  882 (1106)
                      |...|.+++|+|++++| ++++ ||.|++||+.  +++.+..+.  .|...|++++|+| ++++|++|+.||.|++|++.
T Consensus       101 ~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~~g~v~~~~~~  179 (450)
T 2vdu_B          101 IYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE-DDTTVIIADKFGDVYSIDIN  179 (450)
T ss_dssp             CCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSEEEEEETT
T ss_pred             cCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC-CCCEEEEEeCCCcEEEEecC
Confidence            66789999999999996 7887 8999999999  888888876  5678899999999 89999999999999999998


Q ss_pred             cceEEE----EecCcccCeeEEEEecC---CCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCC
Q 001295          883 VDEVKS----KLKGHSKRITGLAFSHA---LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD  955 (1106)
Q Consensus       883 ~~~~~~----~l~~h~~~V~~l~~s~d---~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~d  955 (1106)
                      +++...    .+.+|...|++++|+|+   +++|++++.|++|++||+.+++..    .....+|.   ..|.+++|+ +
T Consensus       180 ~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~----~~~~~~h~---~~v~~~~~s-d  251 (450)
T 2vdu_B          180 SIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIV----DKWLFGHK---HFVSSICCG-K  251 (450)
T ss_dssp             SCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCE----EEECCCCS---SCEEEEEEC-S
T ss_pred             CcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCcee----eeeecCCC---CceEEEEEC-C
Confidence            876544    78899999999999999   999999999999999999876532    12234454   478999999 9


Q ss_pred             CcEEEE-EeCCeEEEEecCCceEeeecccC-----------------------CCCCCeeEEEECCCCCEEEEEE-cCCe
Q 001295          956 QIHFLV-VHETQLAIFETTKLECVKQWVPR-----------------------ESSAPITHATFSCDSQLVYACF-LDAT 1010 (1106)
Q Consensus       956 g~~l~~-~~d~~v~i~d~~~~~~~~~~~~~-----------------------~h~~~v~~l~~s~d~~~l~t~s-~Dg~ 1010 (1106)
                      +++|++ +.|+.|++||+.+++++..+...                       .+...|.+++|+|++++|++++ .|+.
T Consensus       252 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~  331 (450)
T 2vdu_B          252 DYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKC  331 (450)
T ss_dssp             TTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCe
Confidence            999999 58999999999999988776521                       2246799999999999999999 8999


Q ss_pred             EEEEEc--CCc---eeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeC-------CCcEEEEeecCCCCccC
Q 001295         1011 VCVFSA--ANL---KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS-------DGGVHVFEPLESEGKWG 1077 (1106)
Q Consensus      1011 i~vwd~--~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~-------Dg~v~vW~~~~~~~~~~ 1077 (1106)
                      |+||++  .++   +.+..+.       +|  ..+.  .++|+| + .++++.+.       +..|.+|.+....+.|.
T Consensus       332 i~iw~~~~~~~~~l~~~~~~~-------~~--~~v~--~~~~~~-~-~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~~~  397 (450)
T 2vdu_B          332 IIILEMSEKQKGDLALKQIIT-------FP--YNVI--SLSAHN-D-EFQVTLDNKESSGVQKNFAKFIEYNLNENSFV  397 (450)
T ss_dssp             EEEEEECSSSTTCEEEEEEEE-------CS--SCEE--EEEEET-T-EEEEEECCTTCCSSCCCSEEEEEEETTTTEEE
T ss_pred             EEEEEeccCCCCceeeccEec-------cC--CceE--EEEecC-C-cEEEEEecccCCCCCCcceEEEEEEcCCCeEE
Confidence            999999  555   5555554       21  2244  899999 4 45555433       55689999877665553

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=4.6e-28  Score=274.73  Aligned_cols=348  Identities=13%  Similarity=0.108  Sum_probs=212.1

Q ss_pred             CCCcEEEEE---ecCCCeEEEEEeccCcEEEEecCCcce-----eEEeeeeeeccCcCCc-----cccccccCCCCcCeE
Q 001295          350 GSSPMSMDF---HPVQQTLLLVGTNVGDIGLWEVGSRER-----LVLRNFKVWDLGACSM-----PLQAALVKDPGVSVN  416 (1106)
Q Consensus       350 ~~~v~~~~~---sp~g~~llatg~~dg~i~iwd~~~~~~-----~~~~~~~~~d~~~~~~-----~~~~~~~~~h~~~V~  416 (1106)
                      .....++.|   +|++..++++| .++.|.+|+......     ........++......     +........|...+.
T Consensus        15 ~~~p~~~~w~~~~~~~~~l~a~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (393)
T 4gq1_A           15 NVRPYTTTWCSQSPSCSNLLAIG-HDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGN   93 (393)
T ss_dssp             TCCEEEEEECTTSGGGTTEEEEE-ESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC-------
T ss_pred             CCCCeEEEEeCCCCCCCCEEEEE-CCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcc
Confidence            345566677   45666566665 578899998643211     1111111221111000     011112345566666


Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEEccCCceee--eeeeeccccCCeeEEEEcC--------CCCceEEEEecCCCcEEEE
Q 001295          417 RVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR--QHLEIDAHVGGVNDIAFSH--------PNKQLCVITCGDDKTIKVW  486 (1106)
Q Consensus       417 ~l~~spdg~~las~~~d~~v~iwd~~~~~~~~--~~~~l~~h~~~V~~~~~s~--------d~~~~~l~s~~~d~~i~iw  486 (1106)
                      ...+++++.+||+++.|++|+|||+.+++...  ....+.+|.+.|++++|+|        |++  +|+||+.|++|+||
T Consensus        94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s~D~tv~~W  171 (393)
T 4gq1_A           94 VNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVGDDCTLIIW  171 (393)
T ss_dssp             ---CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEETTSEEEEE
T ss_pred             eeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEECCCeEEEE
Confidence            66777788999999999999999999887543  3345789999999999998        777  89999999999999


Q ss_pred             eCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeec
Q 001295          487 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  566 (1106)
Q Consensus       487 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  566 (1106)
                      |+.++.++..+.+|...|.+++|+|.. ..+|++++.||+|++||+++.........+.......               
T Consensus       172 d~~~~~~~~~~~~~~~~v~~v~~~p~~-~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~---------------  235 (393)
T 4gq1_A          172 RLTDEGPILAGYPLSSPGISVQFRPSN-PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPW---------------  235 (393)
T ss_dssp             EEETTEEEEEEEECSSCEEEEEEETTE-EEEEEEEETTSEEEEEETTCCC----------CSCCC---------------
T ss_pred             ECCCCceeeeecCCCCCcEEEEECCCC-CceEEecCCCCEEEEEECCCCcccccccccCCcccce---------------
Confidence            999999888888999999999997653 2589999999999999998866544332221111100               


Q ss_pred             cceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEc-cCCCEEEEEeCCCcEEEEEccCCchh
Q 001295          567 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTNDNGIKILATSDGIRL  645 (1106)
Q Consensus       567 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~  645 (1106)
                                    ..+......           .......++...+.++.|+ +|++.+++++.|+++++||+..+ +.
T Consensus       236 --------------~~s~~~~~~-----------~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~-~~  289 (393)
T 4gq1_A          236 --------------LLTLNTLPL-----------VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFAN-ND  289 (393)
T ss_dssp             --------------SEEEESGGG-----------C------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC------
T ss_pred             --------------EEecccccc-----------eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccC-CC
Confidence                          011111000           0011111234568899987 79999999999999999999776 22


Q ss_pred             hhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCC
Q 001295          646 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE  725 (1106)
Q Consensus       646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~  725 (1106)
                      ...+..                                                                          
T Consensus       290 ~~~l~~--------------------------------------------------------------------------  295 (393)
T 4gq1_A          290 YNEISD--------------------------------------------------------------------------  295 (393)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CceEee--------------------------------------------------------------------------
Confidence            222211                                                                          


Q ss_pred             CCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccC
Q 001295          726 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT  805 (1106)
Q Consensus       726 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  805 (1106)
                                      +...+..+.+.++.+.+..                                             
T Consensus       296 ----------------~~~~~~~~~~~~~~~~~~~---------------------------------------------  314 (393)
T 4gq1_A          296 ----------------STMKLGPKNLLPNVQGISL---------------------------------------------  314 (393)
T ss_dssp             ------------------------CCSCSEEEECS---------------------------------------------
T ss_pred             ----------------ecCccccEEEccccccccc---------------------------------------------
Confidence                            2222333333443321110                                             


Q ss_pred             CCCCCCCeeEEEEec-CCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEee
Q 001295          806 DSNPEEAVPCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR  882 (1106)
Q Consensus       806 ~~~~~~~v~~l~~s~-~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~  882 (1106)
                         +...+..+.+.+ ++.++++|+ ||+|++||+.+++....+..|...|.+++|+| ||++||+++.+| +.+|.+.
T Consensus       315 ---~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafsp-dG~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          315 ---FPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQ-DGSHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             ---SCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECT-TSSEEEEEESSE-EEEEEEG
T ss_pred             ---cCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcC-CCCEEEEEeCCC-eEEEEEe
Confidence               111122222223 344566777 89999999999999888888999999999999 999999998766 6666553

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.96  E-value=2.5e-27  Score=264.52  Aligned_cols=297  Identities=14%  Similarity=0.186  Sum_probs=209.1

Q ss_pred             cCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEe
Q 001295          408 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD  487 (1106)
Q Consensus       408 ~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd  487 (1106)
                      +..|...|.+++|||||++||+|+.++ ++|||+.+++...     ..+...+..++|.+++.. ++++++.|++|++||
T Consensus        15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~d~~v~iWd   87 (355)
T 3vu4_A           15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIM-----SQEMRHLSKVRMLHRTNY-VAFVTGVKEVVHIWD   87 (355)
T ss_dssp             ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEE-----EEECSCCCEEEECTTSSE-EEEECSSTTEEEEEE
T ss_pred             cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceee-----eeecCCeEEEEEcCCCCE-EEEEECCccEEEEEE
Confidence            578999999999999999999998776 7899998765443     122335888999998884 446788899999999


Q ss_pred             CCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCC-CceeEeeCCCCeeEEEEEecCCCeEEEeeec
Q 001295          488 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  566 (1106)
Q Consensus       488 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  566 (1106)
                      +.+++++..+. |...|.+++++++    .++++ .|+.|++||+.+. +.+..+..   ....+++             
T Consensus        88 ~~~~~~~~~~~-~~~~v~~v~~~~~----~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~-------------  145 (355)
T 3vu4_A           88 DVKKQDVSRIK-VDAPVKDLFLSRE----FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEF-------------  145 (355)
T ss_dssp             TTTTEEEEEEE-CSSCEEEEEECSS----EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEE-------------
T ss_pred             CCCCcEEEEEE-CCCceEEEEEcCC----EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEE-------------
Confidence            99999999887 6779999997542    34443 4889999999886 44433332   2222223             


Q ss_pred             cceeEEEEcCCCCEEEE--EECCCeEEEEECCCcc----------------eeEEEccCCCCCCcCeEEEccCCCEEEEE
Q 001295          567 RSLGVVQFDTTKNRFLA--AGDDFSIKFWDMDSVQ----------------LLTSIDADGGLPASPRIRFNKDGCLLAVS  628 (1106)
Q Consensus       567 ~~i~~~~~~~~~~~l~~--~~~d~~i~iwd~~~~~----------------~~~~~~~~~~~~~v~~v~~s~~~~~l~~~  628 (1106)
                              ++  .+++.  |+.||.|++||+.+++                .+..+.+|  ...|.+++|+|+|++|++|
T Consensus       146 --------s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h--~~~v~~~~~s~~g~~l~s~  213 (355)
T 3vu4_A          146 --------SN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH--TNPIKMVRLNRKSDMVATC  213 (355)
T ss_dssp             --------ET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCC--SSCEEEEEECTTSSEEEEE
T ss_pred             --------Ec--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEcc--CCceEEEEECCCCCEEEEE
Confidence                    33  34555  5789999999999865                25667666  5589999999999999999


Q ss_pred             eCCCc-EEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCC
Q 001295          629 TNDNG-IKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVK  707 (1106)
Q Consensus       629 ~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  707 (1106)
                      +.|++ |++||+.++ +.+..+.                                                         
T Consensus       214 s~d~~~v~iwd~~~~-~~~~~~~---------------------------------------------------------  235 (355)
T 3vu4_A          214 SQDGTIIRVFKTEDG-VLVREFR---------------------------------------------------------  235 (355)
T ss_dssp             ETTCSEEEEEETTTC-CEEEEEE---------------------------------------------------------
T ss_pred             eCCCCEEEEEECCCC-cEEEEEE---------------------------------------------------------
Confidence            99998 999999876 2222211                                                         


Q ss_pred             ccccccCCCceeeEecCCCCCCccceecccCccc-cccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCcccc-
Q 001295          708 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENL-RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATA-  785 (1106)
Q Consensus       708 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-  785 (1106)
                                                      .+ |...|.+++|+|++++|++++.|+.|++|++............. 
T Consensus       236 --------------------------------~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~  283 (355)
T 3vu4_A          236 --------------------------------RGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGW  283 (355)
T ss_dssp             --------------------------------CTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTT
T ss_pred             --------------------------------cCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccce
Confidence                                            01 66789999999999999999999999999997543221111000 


Q ss_pred             ---ccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCC
Q 001295          786 ---SVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTF  841 (1106)
Q Consensus       786 ---~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~  841 (1106)
                         ...-..|...     ...+.. ........++|++++++|++++ ||.+++|++..+
T Consensus       284 ~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~  337 (355)
T 3vu4_A          284 INMKYFQSEWSLC-----NFKLSV-DKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD  337 (355)
T ss_dssp             EECCCCCCSSCSE-----EEECCC-CTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred             eecccccccccee-----EEEecc-CCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence               0000011110     000110 1233457799999999999998 999999998653

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=2e-28  Score=277.76  Aligned_cols=267  Identities=10%  Similarity=-0.025  Sum_probs=185.9

Q ss_pred             cCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc-----
Q 001295          348 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-----  422 (1106)
Q Consensus       348 ~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-----  422 (1106)
                      .|...+....+++++. +||+|+.|++|+|||+.+++......+.              .+.+|.+.|.+++|+|     
T Consensus        87 ~~~~~~~~~~~~~~~~-~las~~~d~~v~lw~~~~~~~~~~~~~~--------------~~~gH~~~v~~v~~~p~~~~~  151 (393)
T 4gq1_A           87 LHDGDGNVNSSPVYSL-FLACVCQDNTVRLIITKNETIITQHVLG--------------GKSGHHNFVNDIDIADVYSAD  151 (393)
T ss_dssp             ----------CCEEEE-EEEEEETTSCEEEEEEETTEEEEEEEEC--------------TTTSCSSCEEEEEEEEEECTT
T ss_pred             ccCCCcceeecCCCCC-EEEEEeCCCcEEEEECCCCccceeeeec--------------ccCCCCCceEEEEEccccccc
Confidence            3555556666666776 6999999999999999988765432221              4789999999999998     


Q ss_pred             ---CCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEE--
Q 001295          423 ---DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF--  497 (1106)
Q Consensus       423 ---dg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--  497 (1106)
                         ||++||+|+.|++|+|||+.++..+.   .+.+|...|.+++|+|++.. +|++|+.|++|++||+.+++.....  
T Consensus       152 ~~~d~~~las~s~D~tv~~Wd~~~~~~~~---~~~~~~~~v~~v~~~p~~~~-~l~~~~~d~~v~~wd~~t~~~~~~~~~  227 (393)
T 4gq1_A          152 NRLAEQVIASVGDDCTLIIWRLTDEGPIL---AGYPLSSPGISVQFRPSNPN-QLIVGERNGNIRIFDWTLNLSAEENSQ  227 (393)
T ss_dssp             CSEEEEEEEEEETTSEEEEEEEETTEEEE---EEEECSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCCC-------
T ss_pred             cCCCCCEEEEEECCCeEEEEECCCCceee---eecCCCCCcEEEEECCCCCc-eEEecCCCCEEEEEECCCCcccccccc
Confidence               89999999999999999998876554   46678999999999999865 7999999999999999987654322  


Q ss_pred             -----------------------eccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEe
Q 001295          498 -----------------------EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYS  554 (1106)
Q Consensus       498 -----------------------~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  554 (1106)
                                             .+|...+.++.|. .+++..+++++.|+++++||+........+..+...+..+.+.
T Consensus       228 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~-~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~  306 (393)
T 4gq1_A          228 TELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWI-GSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLL  306 (393)
T ss_dssp             ---CSCCCSEEEESGGGC------CCSSSCSEEEEE-TTTTCEEEEECTTSEEEEEEC-------------------CCS
T ss_pred             cCCcccceEEecccccceeeeecccccccceeeeee-cCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEc
Confidence                                   3677788888875 3567899999999999999999887777777777777777777


Q ss_pred             cCCCeEEEeeeccceeEEEEcCCCC-EEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCc
Q 001295          555 ADGTRTYQGFRKRSLGVVQFDTTKN-RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG  633 (1106)
Q Consensus       555 ~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~  633 (1106)
                      ++.+...  .....+..+.+.+.+. ++++|+.||.|++||+.+++....+..+.  ..|.+++|+|||++||+++.+| 
T Consensus       307 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~--~~V~svafspdG~~LA~as~~G-  381 (393)
T 4gq1_A          307 PNVQGIS--LFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLG--MPIVDFCWHQDGSHLAIATEGS-  381 (393)
T ss_dssp             CSEEEEC--SSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECS--SCEEEEEECTTSSEEEEEESSE-
T ss_pred             ccccccc--ccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCC--CcEEEEEEcCCCCEEEEEeCCC-
Confidence            7754221  1111233333333344 55667889999999999999888776664  4799999999999999999765 


Q ss_pred             EEEEEc
Q 001295          634 IKILAT  639 (1106)
Q Consensus       634 i~iwd~  639 (1106)
                      +.+|.+
T Consensus       382 v~lvrL  387 (393)
T 4gq1_A          382 VLLTRL  387 (393)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence            556654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=3.5e-27  Score=272.77  Aligned_cols=296  Identities=14%  Similarity=0.123  Sum_probs=226.9

Q ss_pred             cCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeee--eeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCC
Q 001295          413 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL--EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN  490 (1106)
Q Consensus       413 ~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~--~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~  490 (1106)
                      ..+.+++|+|++.++++++.++.|++||+.+++......  .+.+|.+.|.+++|++++.  ++++++.|+.|++||+.+
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~s~~~d~~v~~~d~~~  200 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNE--LWVSQMQANAVHVFDLKT  200 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTE--EEEEEGGGTEEEEEETTT
T ss_pred             CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCE--EEEEECCCCEEEEEECCC
Confidence            356699999988888888889999999999988664221  3458999999999999998  899999999999999999


Q ss_pred             CceeEEEeccCCCeEEEeccccCCceEE-EEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccce
Q 001295          491 GAKQYIFEGHEAPVYSVCPHHKENIQFI-FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL  569 (1106)
Q Consensus       491 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i  569 (1106)
                      ++.+..+..|...+.+++|+++.  ..+ ++++.|+.|++||+++++....+.. ...+.+++|+|++            
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g------------  265 (433)
T 3bws_A          201 LAYKATVDLTGKWSKILLYDPIR--DLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLLSKDG------------  265 (433)
T ss_dssp             CCEEEEEECSSSSEEEEEEETTT--TEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEECTTS------------
T ss_pred             ceEEEEEcCCCCCeeEEEEcCCC--CEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEEcCCC------------
Confidence            99999999999999999987654  455 5666899999999987655444433 2334555555554            


Q ss_pred             eEEEEcCCCCEEEEEE--------CCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEE-EEEeCCCcEEEEEcc
Q 001295          570 GVVQFDTTKNRFLAAG--------DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL-AVSTNDNGIKILATS  640 (1106)
Q Consensus       570 ~~~~~~~~~~~l~~~~--------~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iwd~~  640 (1106)
                               +++++++        .|+.|++||+.+++.+..+....   .+.+++|+|+++.+ ++++.++.|++||+.
T Consensus       266 ---------~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~  333 (433)
T 3bws_A          266 ---------KELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPG---NKRHIVSGNTENKIYVSDMCCSKIEVYDLK  333 (433)
T ss_dssp             ---------SEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEE---CEEEEEECSSTTEEEEEETTTTEEEEEETT
T ss_pred             ---------CEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCC---CcceEEECCCCCEEEEEecCCCEEEEEECC
Confidence                     4677766        58899999999998877764322   57889999999755 566889999999987


Q ss_pred             CCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceee
Q 001295          641 DGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKV  720 (1106)
Q Consensus       641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v  720 (1106)
                      ++ +....+                                                                       
T Consensus       334 ~~-~~~~~~-----------------------------------------------------------------------  341 (433)
T 3bws_A          334 EK-KVQKSI-----------------------------------------------------------------------  341 (433)
T ss_dssp             TT-EEEEEE-----------------------------------------------------------------------
T ss_pred             CC-cEEEEe-----------------------------------------------------------------------
Confidence            65 111110                                                                       


Q ss_pred             EecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCcc
Q 001295          721 WKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMM  800 (1106)
Q Consensus       721 w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~  800 (1106)
                                          .+...+.+++|+|+++.+++++.+..                                  
T Consensus       342 --------------------~~~~~~~~~~~s~dg~~l~~~~~~~~----------------------------------  367 (433)
T 3bws_A          342 --------------------PVFDKPNTIALSPDGKYLYVSCRGPN----------------------------------  367 (433)
T ss_dssp             --------------------ECSSSEEEEEECTTSSEEEEEECCCC----------------------------------
T ss_pred             --------------------cCCCCCCeEEEcCCCCEEEEEecCCC----------------------------------
Confidence                                02345778999999988877765410                                  


Q ss_pred             ccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeC-CCcEEE
Q 001295          801 TNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-DSSIQI  878 (1106)
Q Consensus       801 ~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~-dg~v~i  878 (1106)
                              .          .+..++++++ ||.|++||+.+++.+..+.. ...+.+++|+| ++++|++++. |+.|++
T Consensus       368 --------~----------~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~d~~i~v  427 (433)
T 3bws_A          368 --------H----------PTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSP-DNRYLVISDFLDHQIRV  427 (433)
T ss_dssp             --------C----------TTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECT-TSCEEEEEETTTTEEEE
T ss_pred             --------c----------cccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcC-CCCEEEEEECCCCeEEE
Confidence                    0          0223445556 89999999999998888875 45799999999 8888887765 999999


Q ss_pred             EEeec
Q 001295          879 YNVRV  883 (1106)
Q Consensus       879 wd~~~  883 (1106)
                      |++..
T Consensus       428 ~~~~~  432 (433)
T 3bws_A          428 YRRDG  432 (433)
T ss_dssp             EEETT
T ss_pred             EEecC
Confidence            99863

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.96  E-value=5.8e-27  Score=261.62  Aligned_cols=294  Identities=10%  Similarity=0.121  Sum_probs=204.6

Q ss_pred             eeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEE-EEEeCCCcEEEEEccCCchhhh
Q 001295          569 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL-AVSTNDNGIKILATSDGIRLLR  647 (1106)
Q Consensus       569 i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~  647 (1106)
                      +.+++|+|++++|++|+.+ .+++||+.+++........    .+..+++.++++.+ ++++.|+.|++||..++ +.+.
T Consensus        22 V~~v~fs~dg~~la~g~~~-~~~iw~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~-~~~~   95 (355)
T 3vu4_A           22 VTDYEFNQDQSCLILSTLK-SFEIYNVHPVAHIMSQEMR----HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKK-QDVS   95 (355)
T ss_dssp             CCEEEECTTSSEEEEECSS-EEEEEEETTEEEEEEEECS----CCCEEEECTTSSEEEEECSSTTEEEEEETTTT-EEEE
T ss_pred             eEEEEECCCCCEEEEEcCC-EEEEEecCCcceeeeeecC----CeEEEEEcCCCCEEEEEECCccEEEEEECCCC-cEEE
Confidence            3334444444467777766 5789999888776655432    47789999988887 46777899999998876 2211


Q ss_pred             hhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCC
Q 001295          648 TFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELS  727 (1106)
Q Consensus       648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~  727 (1106)
                      .+                                                                              
T Consensus        96 ~~------------------------------------------------------------------------------   97 (355)
T 3vu4_A           96 RI------------------------------------------------------------------------------   97 (355)
T ss_dssp             EE------------------------------------------------------------------------------
T ss_pred             EE------------------------------------------------------------------------------
Confidence            11                                                                              


Q ss_pred             CCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCC
Q 001295          728 EPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDS  807 (1106)
Q Consensus       728 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  807 (1106)
                                   .+...|.++.++++.  +++ +.++.+++|++....                     ..+.. +   
T Consensus        98 -------------~~~~~v~~v~~~~~~--~~~-~~~~~i~i~d~~~~~---------------------~~~~~-~---  136 (355)
T 3vu4_A           98 -------------KVDAPVKDLFLSREF--IVV-SYGDVISVFKFGNPW---------------------KRITD-D---  136 (355)
T ss_dssp             -------------ECSSCEEEEEECSSE--EEE-EETTEEEEEESSTTC---------------------CBSSC-C---
T ss_pred             -------------ECCCceEEEEEcCCE--EEE-EEcCEEEEEECCCCc---------------------eeeEE-e---
Confidence                         033568888998775  333 357889999876320                     11110 0   


Q ss_pred             CCCCCeeEEEEecCCCEEEEE--e-CCeEEEEEcCCCc----------------eeeeecCCCCCeeEEEEecCCCceEE
Q 001295          808 NPEEAVPCFALSKNDSYVMSA--S-GGKISLFNMMTFK----------------TMATFMPPPPAATFLAFHPQDNNIIA  868 (1106)
Q Consensus       808 ~~~~~v~~l~~s~~~~~l~~~--s-dg~i~vwd~~~~~----------------~~~~~~~~~~~v~~l~~s~~d~~~la  868 (1106)
                        ......+++++  .+++++  + +|.|++||+.++.                ++..+.+|...|++++|+| ++++||
T Consensus       137 --~~~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~~l~  211 (355)
T 3vu4_A          137 --IRFGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR-KSDMVA  211 (355)
T ss_dssp             --EEEEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECT-TSSEEE
T ss_pred             --ccCCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC-CCCEEE
Confidence              11344566777  667764  4 7999999999765                2678899999999999999 999999


Q ss_pred             EeeCCCc-EEEEEeecceEEEEec-C-cccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCC
Q 001295          869 IGMDDSS-IQIYNVRVDEVKSKLK-G-HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQ  945 (1106)
Q Consensus       869 ~g~~dg~-v~iwd~~~~~~~~~l~-~-h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  945 (1106)
                      +|+.||+ |+|||+.+++++..+. + |...|++++|+||+++|++++.|++|++||+..........+..         
T Consensus       212 s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~---------  282 (355)
T 3vu4_A          212 TCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKG---------  282 (355)
T ss_dssp             EEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTT---------
T ss_pred             EEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccc---------
Confidence            9999998 9999999999999998 6 99999999999999999999999999999998754322111110         


Q ss_pred             CCceEEEcCCCcEEEEEeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCce
Q 001295          946 SDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1020 (1106)
Q Consensus       946 ~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~ 1020 (1106)
                       +    +.|.  ++  ..     .|..    +...+. ..+......++|++|+++|++++.||.+++|++..++
T Consensus       283 -~----~~~~--~~--~~-----~~~~----~~~~~~-~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~  338 (355)
T 3vu4_A          283 -W----INMK--YF--QS-----EWSL----CNFKLS-VDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD  338 (355)
T ss_dssp             -T----EECC--CC--CC-----SSCS----EEEECC-CCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred             -e----eecc--cc--cc-----ccce----eEEEec-cCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence             0    0000  00  00     0110    001111 1223455779999999999999999999999986543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.4e-27  Score=294.38  Aligned_cols=251  Identities=12%  Similarity=0.070  Sum_probs=209.9

Q ss_pred             CCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcC--CCceeeeecCCCCCeeEEEEecCC--CceEEEeeCCCcEEEEEee
Q 001295          808 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMM--TFKTMATFMPPPPAATFLAFHPQD--NNIIAIGMDDSSIQIYNVR  882 (1106)
Q Consensus       808 ~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~--~~~~~~~~~~~~~~v~~l~~s~~d--~~~la~g~~dg~v~iwd~~  882 (1106)
                      +|...|++++|+|++++|++|+ ||.|++||+.  ++.....+.+|...|++++|++ +  +++|++|+.||.|++||+.
T Consensus         7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~~~l~s~s~Dg~I~vwd~~   85 (753)
T 3jro_A            7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLIWKEE   85 (753)
T ss_dssp             -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECC-TTSCSEEEEEETTSCEEEEEEE
T ss_pred             cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecC-CCCCCEEEEEeCCCeEEEEECC
Confidence            3999999999999999999998 8999999998  5677888999999999999998 6  8999999999999999999


Q ss_pred             cce--EEEEecCcccCeeEEEEecC--CCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcC----
Q 001295          883 VDE--VKSKLKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ----  954 (1106)
Q Consensus       883 ~~~--~~~~l~~h~~~V~~l~~s~d--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~----  954 (1106)
                      +++  .+..+.+|...|++++|+|+  +.+|++++.||+|++||+.++.......   ..+|.   ..|.+++|+|    
T Consensus        86 ~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~---~~~~~---~~v~~l~~~p~~~~  159 (753)
T 3jro_A           86 NGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII---IDAHA---IGVNSASWAPATIE  159 (753)
T ss_dssp             TTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEE---EECCS---SCEEEEEECCCC--
T ss_pred             CCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeE---eecCC---CceEEEEecCcccc
Confidence            987  77888999999999999999  9999999999999999998864433222   22333   4789999999    


Q ss_pred             ---------CCcEEEE-EeCCeEEEEecCCc----eEeeecccCCCCCCeeEEEECCC---CCEEEEEEcCCeEEEEEcC
Q 001295          955 ---------DQIHFLV-VHETQLAIFETTKL----ECVKQWVPRESSAPITHATFSCD---SQLVYACFLDATVCVFSAA 1017 (1106)
Q Consensus       955 ---------dg~~l~~-~~d~~v~i~d~~~~----~~~~~~~~~~h~~~v~~l~~s~d---~~~l~t~s~Dg~i~vwd~~ 1017 (1106)
                               ++.++++ +.|+.|++||+.++    .+...+.  +|...|++++|+|+   +++|++|+.||+|++||+.
T Consensus       160 ~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~  237 (753)
T 3jro_A          160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE--GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD  237 (753)
T ss_dssp             -------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEEC--CCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred             cccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeec--CCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence                     5888888 58999999999877    3444443  89999999999999   8999999999999999999


Q ss_pred             CceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCC
Q 001295         1018 NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus      1018 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
                      ++.........  ...+| ...+.  +++|+| ++++|++|+.||.|++|++.++.
T Consensus       238 ~~~~~~~~~~~--~~~~~-~~~v~--~l~~sp-dg~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          238 NEQGPWKKTLL--KEEKF-PDVLW--RASWSL-SGNVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             SSSSCCBCCBS--SSSCC-SSCCC--CEEECT-TTCCEEEECSSSCEECCBCCSSS
T ss_pred             CCCCcceeEEe--ccCCC-CCceE--EEEEcC-CCCEEEEEcCCCEEEEEecCCCC
Confidence            87532221111  11122 33355  799999 78999999999999999998654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.1e-27  Score=266.67  Aligned_cols=198  Identities=11%  Similarity=0.064  Sum_probs=158.2

Q ss_pred             CCCCeeEEEEec--CCCEEEEEe-CCeEEEEEcCCCceeeeec-CCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecc
Q 001295          809 PEEAVPCFALSK--NDSYVMSAS-GGKISLFNMMTFKTMATFM-PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD  884 (1106)
Q Consensus       809 ~~~~v~~l~~s~--~~~~l~~~s-dg~i~vwd~~~~~~~~~~~-~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~  884 (1106)
                      |...|.+++++|  +++++++++ ||+|++||+.+++...... .+...+++++|+| ++.+||+|+.||.|++||+.++
T Consensus       124 ~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~  202 (343)
T 3lrv_A          124 SANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSP  202 (343)
T ss_dssp             CSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCT
T ss_pred             CCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCC
Confidence            667899999999  999999999 9999999999998876664 3455799999999 9999999999999999999999


Q ss_pred             eEE-EEecC-cccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCC--ceEEEcCCCcEEE
Q 001295          885 EVK-SKLKG-HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD--TRVQFHQDQIHFL  960 (1106)
Q Consensus       885 ~~~-~~l~~-h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~s~dg~~l~  960 (1106)
                      +.+ ..+.+ |.+.|++++|+|++.+|++++. ++|++||+.+.+...  .+.....+.   ..+  .+++|+|+|++|+
T Consensus       203 ~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~g~~l~  276 (343)
T 3lrv_A          203 DQASSRFPVDEEAKIKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTL--AYPTYTIPE---FKTGTVTYDIDDSGKNMI  276 (343)
T ss_dssp             TSCCEECCCCTTSCEEEEEECTTSSEEEEEES-SBEEEEETTSSTTCB--SSCCCBC--------CCEEEEECTTSSEEE
T ss_pred             CCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcce--eeccccccc---ccccceEEEECCCCCEEE
Confidence            887 78888 9999999999999999999994 599999999865422  111111111   122  4699999999999


Q ss_pred             EE-e-CCeEEEEecCCceEeeecccCCCCCCeeEEEECC---CCCEEEEEEcCCeEEEEEcCCc
Q 001295          961 VV-H-ETQLAIFETTKLECVKQWVPRESSAPITHATFSC---DSQLVYACFLDATVCVFSAANL 1019 (1106)
Q Consensus       961 ~~-~-d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~---d~~~l~t~s~Dg~i~vwd~~~~ 1019 (1106)
                      ++ . |+.+++|++.+.......      .++..++|++   +.+.|++++.||.+.++-....
T Consensus       277 ~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~  334 (343)
T 3lrv_A          277 AYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMDVVCGDGGIAAILKTND  334 (343)
T ss_dssp             EEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEEEEEETTEEEEEEECSS
T ss_pred             EecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeEEEecCCceEEEEecCC
Confidence            94 4 999999999765432221      4678889998   8999999999999998865443

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.95  E-value=1.5e-26  Score=266.19  Aligned_cols=212  Identities=19%  Similarity=0.277  Sum_probs=174.6

Q ss_pred             ccCCCCcCeEEEEEccC-CCEEEEEeCCCeEEEEEccCC-------ceeeeeeeeccccCCeeEEEEcCCCCceEEEEec
Q 001295          407 LVKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQIYSYHGG-------DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG  478 (1106)
Q Consensus       407 ~~~~h~~~V~~l~~spd-g~~las~~~d~~v~iwd~~~~-------~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~  478 (1106)
                      ....|.+.|++++|+|+ +.+||+++.||.|++||+.+.       ........+.+|...|.+++|+|++.. +|++|+
T Consensus       123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s~~  201 (430)
T 2xyi_A          123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YLLSAS  201 (430)
T ss_dssp             EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-EEEEEC
T ss_pred             EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-eEEEEe
Confidence            45689999999999997 789999999999999999862       112334468899999999999999886 699999


Q ss_pred             CCCcEEEEeCCCCce-------eEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCC---CceeEeeCCCCee
Q 001295          479 DDKTIKVWDATNGAK-------QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL---GSRVDYEAPGRWC  548 (1106)
Q Consensus       479 ~d~~i~iwd~~~~~~-------~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v  548 (1106)
                      .||.|++||+.++..       ...+.+|...|.+++|++.. +.+|++++.||.|++||+++.   .....+..+...|
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~-~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v  280 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLH-ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV  280 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred             CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCC-CCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence            999999999987432       46778999999999998743 378999999999999999976   3445556666666


Q ss_pred             EEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCC-cceeEEEccCCCCCCcCeEEEccCCC-EEE
Q 001295          549 TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNKDGC-LLA  626 (1106)
Q Consensus       549 ~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~  626 (1106)
                      .+++|+|++.                    ..+++|+.||.|++||+++ +..+..+..|  ...|.+++|+|+++ +|+
T Consensus       281 ~~i~~~p~~~--------------------~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h--~~~v~~i~~sp~~~~~l~  338 (430)
T 2xyi_A          281 NCLSFNPYSE--------------------FILATGSADKTVALWDLRNLKLKLHSFESH--KDEIFQVQWSPHNETILA  338 (430)
T ss_dssp             EEEEECSSCT--------------------TEEEEEETTSEEEEEETTCTTSCSEEEECC--SSCEEEEEECSSCTTEEE
T ss_pred             EEEEeCCCCC--------------------CEEEEEeCCCeEEEEeCCCCCCCeEEeecC--CCCEEEEEECCCCCCEEE
Confidence            6666666554                    2588999999999999988 5677888766  44799999999884 799


Q ss_pred             EEeCCCcEEEEEccCC
Q 001295          627 VSTNDNGIKILATSDG  642 (1106)
Q Consensus       627 ~~~~dg~i~iwd~~~~  642 (1106)
                      +++.||.|++||+...
T Consensus       339 s~~~d~~i~iwd~~~~  354 (430)
T 2xyi_A          339 SSGTDRRLHVWDLSKI  354 (430)
T ss_dssp             EEETTSCCEEEEGGGT
T ss_pred             EEeCCCcEEEEeCCCC
Confidence            9999999999998763

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=6e-27  Score=260.82  Aligned_cols=280  Identities=8%  Similarity=0.049  Sum_probs=214.4

Q ss_pred             EEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeC
Q 001295          464 AFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA  543 (1106)
Q Consensus       464 ~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  543 (1106)
                      .+.+++.  ++++|+.||+|++||+.+++.+..+.  ...|.++.+++.     +++++.|++|++|+..          
T Consensus        43 ~~~~d~~--~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~----------  103 (343)
T 3lrv_A           43 SMYYDKW--VCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-----IISRGPCNRLLLLYPG----------  103 (343)
T ss_dssp             SSSEEEE--EEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-----EEEECSTTEEEEEETT----------
T ss_pred             hhcCCCC--EEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-----eEEecCCCeEEEEEcc----------
Confidence            3445666  89999999999999999999988887  466777777654     9999999999999765          


Q ss_pred             CCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEcc--C
Q 001295          544 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK--D  621 (1106)
Q Consensus       544 ~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~--~  621 (1106)
                                                                  +.+.+|++.+++.+..+.. .+...|.+++|+|  +
T Consensus       104 --------------------------------------------~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~  138 (343)
T 3lrv_A          104 --------------------------------------------NQITILDSKTNKVLREIEV-DSANEIIYMYGHNEVN  138 (343)
T ss_dssp             --------------------------------------------TEEEEEETTTCCEEEEEEC-CCSSCEEEEECCC---
T ss_pred             --------------------------------------------CceEEeecCCcceeEEeec-CCCCCEEEEEcCCCCC
Confidence                                                        2567889888887766652 2234799999999  9


Q ss_pred             CCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCcc
Q 001295          622 GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVR  701 (1106)
Q Consensus       622 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  701 (1106)
                      ++++++++.||.|++||+.++. ......                                                   
T Consensus       139 ~~~l~s~s~dg~i~~wd~~~~~-~~~~~~---------------------------------------------------  166 (343)
T 3lrv_A          139 TEYFIWADNRGTIGFQSYEDDS-QYIVHS---------------------------------------------------  166 (343)
T ss_dssp             CCEEEEEETTCCEEEEESSSSC-EEEEEC---------------------------------------------------
T ss_pred             CCEEEEEeCCCcEEEEECCCCc-EEEEEe---------------------------------------------------
Confidence            9999999999999999998762 111100                                                   


Q ss_pred             ccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCC
Q 001295          702 SLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSG  781 (1106)
Q Consensus       702 ~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~  781 (1106)
                                                            ..+...|.+++|+|++.++++++.||.|++||+..       
T Consensus       167 --------------------------------------~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~-------  201 (343)
T 3lrv_A          167 --------------------------------------AKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSS-------  201 (343)
T ss_dssp             --------------------------------------CCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSC-------
T ss_pred             --------------------------------------cCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC-------
Confidence                                                  01345688999999999999999999999998763       


Q ss_pred             ccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeecC---CCCCee--E
Q 001295          782 KATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMP---PPPAAT--F  856 (1106)
Q Consensus       782 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~---~~~~v~--~  856 (1106)
                                     +......+.. .|...|++++|+|++.+|++++++.|++||+++++.+..+..   |...+.  +
T Consensus       202 ---------------~~~~~~~~~~-~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  265 (343)
T 3lrv_A          202 ---------------PDQASSRFPV-DEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVT  265 (343)
T ss_dssp             ---------------TTSCCEECCC-CTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEE
T ss_pred             ---------------CCCCccEEec-cCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceE
Confidence                           2222011111 288999999999999999999988999999998877666543   334444  6


Q ss_pred             EEEecCCCceEEEeeC-CCcEEEEEeecceEEEEecCcccCeeEEEEec---CCCEEEEEcCCCcEEEEeCCC
Q 001295          857 LAFHPQDNNIIAIGMD-DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH---ALNVLVSSGADSQLCVWSSDG  925 (1106)
Q Consensus       857 l~~s~~d~~~la~g~~-dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~---d~~~l~s~s~Dg~i~vwd~~~  925 (1106)
                      ++|+| ++++|++++. |+.|+||++.+.......    .++..++|++   +...|++++.|+.+.++-...
T Consensus       266 ~~~~~-~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~  333 (343)
T 3lrv_A          266 YDIDD-SGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKTN  333 (343)
T ss_dssp             EEECT-TSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred             EEECC-CCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEecC
Confidence            99999 8999999988 999999999765432222    5678888988   889999999999999885443

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=1.5e-25  Score=262.87  Aligned_cols=334  Identities=13%  Similarity=0.140  Sum_probs=242.4

Q ss_pred             EEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccC-CCCcCeEEEEEccCCCEEEEEeCCCe
Q 001295          357 DFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVK-DPGVSVNRVIWSPDGSLFGVAYSRHI  435 (1106)
Q Consensus       357 ~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~h~~~V~~l~~spdg~~las~~~d~~  435 (1106)
                      +|+|++. ++++++.|++|.+||..+++.+..                   +. +|.  +.+++|||||++|++++.|++
T Consensus       144 ~~~p~~~-~~vs~~~d~~V~v~D~~t~~~~~~-------------------i~~g~~--~~~v~~spdg~~l~v~~~d~~  201 (543)
T 1nir_A          144 DLDLPNL-FSVTLRDAGQIALVDGDSKKIVKV-------------------IDTGYA--VHISRMSASGRYLLVIGRDAR  201 (543)
T ss_dssp             CCCGGGE-EEEEEGGGTEEEEEETTTCCEEEE-------------------EECSTT--EEEEEECTTSCEEEEEETTSE
T ss_pred             ccCCCCE-EEEEEcCCCeEEEEECCCceEEEE-------------------EecCcc--cceEEECCCCCEEEEECCCCe
Confidence            3889887 689999999999999999988764                   23 443  889999999999999999999


Q ss_pred             EEEEEc--cCCceeeeeeeeccccCCeeEEEEcC----CCCceEEEEec-CCCcEEEEeCCCCceeEEEecc--------
Q 001295          436 VQIYSY--HGGDEVRQHLEIDAHVGGVNDIAFSH----PNKQLCVITCG-DDKTIKVWDATNGAKQYIFEGH--------  500 (1106)
Q Consensus       436 v~iwd~--~~~~~~~~~~~l~~h~~~V~~~~~s~----d~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~h--------  500 (1106)
                      |.+||+  .+++.+.   ++. +...+..++|+|    ||+  ++++++ .+++|.|||..+++++.++..+        
T Consensus       202 V~v~D~~~~t~~~~~---~i~-~g~~p~~va~sp~~~~dg~--~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~  275 (543)
T 1nir_A          202 IDMIDLWAKEPTKVA---EIK-IGIEARSVESSKFKGYEDR--YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQT  275 (543)
T ss_dssp             EEEEETTSSSCEEEE---EEE-CCSEEEEEEECCSTTCTTT--EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCC
T ss_pred             EEEEECcCCCCcEEE---EEe-cCCCcceEEeCCCcCCCCC--EEEEEEccCCeEEEEeccccccceeecccCcccCccc
Confidence            999999  7777655   344 345689999999    999  566666 5899999999999999988753        


Q ss_pred             --CC-CeEEEeccccCCceEEEEEecCCeEEEEeCCCCCcee--EeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEc
Q 001295          501 --EA-PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV--DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD  575 (1106)
Q Consensus       501 --~~-~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~  575 (1106)
                        .. .+.++.++++.. .++++...++.|.+||+.+.+...  .+. +..                     ....+.|+
T Consensus       276 ~~~~~~v~~i~~s~~~~-~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~---------------------~~~~~~~s  332 (543)
T 1nir_A          276 YHPEPRVAAIIASHEHP-EFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAP---------------------FLHDGGWD  332 (543)
T ss_dssp             EESCCCEEEEEECSSSS-EEEEEETTTTEEEEEECTTSSSCEEEEEE-CCS---------------------SCCCEEEC
T ss_pred             cccCCceEEEEECCCCC-EEEEEECCCCeEEEEEecCCCcceeEEec-cCc---------------------CccCceEC
Confidence              22 688888876543 678888899999999998755432  111 222                     33345566


Q ss_pred             CCCCEEEEEE-CCCeEEEEECCCcceeEEEccCCCCCCcCeEE-EccC-CCEEEEEe-CCCcEEEEEccCCchhhhhhcc
Q 001295          576 TTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIR-FNKD-GCLLAVST-NDNGIKILATSDGIRLLRTFEN  651 (1106)
Q Consensus       576 ~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~-~s~~-~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~  651 (1106)
                      |+++++++++ .+++|.+||..+++++..+........-..+. ++|+ +.+++++. .|++|.+||+.+..        
T Consensus       333 pdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~--------  404 (543)
T 1nir_A          333 SSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKN--------  404 (543)
T ss_dssp             TTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT--------
T ss_pred             CCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCC--------
Confidence            6666776654 68999999999999998886422111112233 4676 66667765 57999999986631        


Q ss_pred             cccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCcc
Q 001295          652 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ  731 (1106)
Q Consensus       652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~  731 (1106)
                      |...                                                                            
T Consensus       405 ~~~~----------------------------------------------------------------------------  408 (543)
T 1nir_A          405 HPQY----------------------------------------------------------------------------  408 (543)
T ss_dssp             CTTT----------------------------------------------------------------------------
T ss_pred             Cchh----------------------------------------------------------------------------
Confidence            0000                                                                            


Q ss_pred             ceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCC
Q 001295          732 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE  811 (1106)
Q Consensus       732 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  811 (1106)
                                 ..           +         .++.                                  +.+  |..
T Consensus       409 -----------~~-----------~---------~v~~----------------------------------l~~--~g~  421 (543)
T 1nir_A          409 -----------AW-----------K---------KVAE----------------------------------LQG--QGG  421 (543)
T ss_dssp             -----------BT-----------S---------EEEE----------------------------------EEC--SCS
T ss_pred             -----------cC-----------e---------EEEE----------------------------------EEc--CCC
Confidence                       00           0         0000                                  000  344


Q ss_pred             CeeEEEEecCCCEEEEEe--------CCeEEEEEcCCCcee-eee--------cCCCCCeeEEEEecCCCceEEEee---
Q 001295          812 AVPCFALSKNDSYVMSAS--------GGKISLFNMMTFKTM-ATF--------MPPPPAATFLAFHPQDNNIIAIGM---  871 (1106)
Q Consensus       812 ~v~~l~~s~~~~~l~~~s--------dg~i~vwd~~~~~~~-~~~--------~~~~~~v~~l~~s~~d~~~la~g~---  871 (1106)
                      .+..++++|++++|++++        +++|.|||+.+++.. ..+        ..+...+..++|+| +|+.|+++.   
T Consensus       422 ~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~g~~~~~s~~~~  500 (543)
T 1nir_A          422 GSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNG  500 (543)
T ss_dssp             CCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECS-SSSEEEEEEECC
T ss_pred             CceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCC-CCCEEEEEeecC
Confidence            456677888888888875        468999999988877 333        34567899999999 787777652   


Q ss_pred             --CCCcEEEEEeecceEEEEecCc
Q 001295          872 --DDSSIQIYNVRVDEVKSKLKGH  893 (1106)
Q Consensus       872 --~dg~v~iwd~~~~~~~~~l~~h  893 (1106)
                        .|+.|.|||..+++++.+++.+
T Consensus       501 ~~~~~~i~v~D~~t~~~~~~i~~~  524 (543)
T 1nir_A          501 KNDSSALVVVDDKTLKLKAVVKDP  524 (543)
T ss_dssp             TTSCCEEEEEETTTTEEEEEECCT
T ss_pred             CCCCCeEEEEECCCceEEEeecCC
Confidence              4799999999999999998864

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=1.7e-25  Score=262.52  Aligned_cols=332  Identities=12%  Similarity=0.100  Sum_probs=244.7

Q ss_pred             EcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeC--CCCCceeEee
Q 001295          465 FSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY--DNLGSRVDYE  542 (1106)
Q Consensus       465 ~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~--~~~~~~~~~~  542 (1106)
                      |+|++.  ++++++.|++|.+||..+++++.++..+.. +..++|+  +++++|++++.|+.|.+||+  .+.+....+.
T Consensus       145 ~~p~~~--~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~s--pdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~  219 (543)
T 1nir_A          145 LDLPNL--FSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMS--ASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK  219 (543)
T ss_dssp             CCGGGE--EEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEEC--TTSCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred             cCCCCE--EEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEEC--CCCCEEEEECCCCeEEEEECcCCCCcEEEEEe
Confidence            788887  899999999999999999999999984333 8888875  46689999999999999999  5554444444


Q ss_pred             CCCCeeEEEEEec----CCCeEEEeeeccceeEEEEcCCCCEEEEEE-CCCeEEEEECCCcceeEEEccCC---------
Q 001295          543 APGRWCTTMAYSA----DGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADG---------  608 (1106)
Q Consensus       543 ~~~~~v~~~~~s~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~---------  608 (1106)
                       ....+..++|+|    ||                     +++++++ .+++|.+||..+++++..+...+         
T Consensus       220 -~g~~p~~va~sp~~~~dg---------------------~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~  277 (543)
T 1nir_A          220 -IGIEARSVESSKFKGYED---------------------RYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYH  277 (543)
T ss_dssp             -CCSEEEEEEECCSTTCTT---------------------TEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEE
T ss_pred             -cCCCcceEEeCCCcCCCC---------------------CEEEEEEccCCeEEEEeccccccceeecccCcccCccccc
Confidence             233445555555    44                     4777776 58999999999999998886532         


Q ss_pred             CCCCcCeEEEccCCCE-EEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhccccccccc
Q 001295          609 GLPASPRIRFNKDGCL-LAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA  687 (1106)
Q Consensus       609 ~~~~v~~v~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  687 (1106)
                      ....+..+.++|++.. +++...++.|.+||..+.. .+.                                        
T Consensus       278 ~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~-~l~----------------------------------------  316 (543)
T 1nir_A          278 PEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID-NLT----------------------------------------  316 (543)
T ss_dssp             SCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSS-SCE----------------------------------------
T ss_pred             cCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCC-cce----------------------------------------
Confidence            1124677888886554 4455567788888765441 000                                        


Q ss_pred             ccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceE
Q 001295          688 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH  767 (1106)
Q Consensus       688 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  767 (1106)
                                                                                +..+                  
T Consensus       317 ----------------------------------------------------------~~~i------------------  320 (543)
T 1nir_A          317 ----------------------------------------------------------VTSI------------------  320 (543)
T ss_dssp             ----------------------------------------------------------EEEE------------------
T ss_pred             ----------------------------------------------------------eEEe------------------
Confidence                                                                      0000                  


Q ss_pred             EEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCCceee
Q 001295          768 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMA  845 (1106)
Q Consensus       768 ~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~  845 (1106)
                                                              .+...+..++|+|+|+++++++  +++|.+||+.+++++.
T Consensus       321 ----------------------------------------~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~  360 (543)
T 1nir_A          321 ----------------------------------------GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSA  360 (543)
T ss_dssp             ----------------------------------------ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred             ----------------------------------------ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEE
Confidence                                                    0223345688999999877665  6899999999999888


Q ss_pred             eecC----CCCCeeEEEEecCCCceEEEee-CCCcEEEEEeec-------ceEEEEecCcccCeeEEEEecCCCEEEEEc
Q 001295          846 TFMP----PPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRV-------DEVKSKLKGHSKRITGLAFSHALNVLVSSG  913 (1106)
Q Consensus       846 ~~~~----~~~~v~~l~~s~~d~~~la~g~-~dg~v~iwd~~~-------~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s  913 (1106)
                      .+..    |.+....+ ++|+++.+++++. .|++|.+||+.+       +++++++.+|.+.+..++|+||+++|++++
T Consensus       361 ~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~  439 (543)
T 1nir_A          361 LVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDT  439 (543)
T ss_dssp             EEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECC
T ss_pred             eeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEec
Confidence            7764    54444343 5774577888875 689999999998       899999999999999999999999999987


Q ss_pred             -------CCCcEEEEeCCCcccccceeecc--cCCCCCCCCCCceEEEcCCCcEEEEE------eCCeEEEEecCCceEe
Q 001295          914 -------ADSQLCVWSSDGWEKQKNRFLQI--PTGRTPTAQSDTRVQFHQDQIHFLVV------HETQLAIFETTKLECV  978 (1106)
Q Consensus       914 -------~Dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~s~dg~~l~~~------~d~~v~i~d~~~~~~~  978 (1106)
                             .+++|.|||+.+++... ..+.+  ..+.......+..+.|+|||+.++++      .++.|.|||.++++++
T Consensus       440 ~~~~~~~~~~~v~v~d~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~  518 (543)
T 1nir_A          440 TFNPDARISQSVAVFDLKNLDAKY-QVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLK  518 (543)
T ss_dssp             TTCSSHHHHTCEEEEETTCTTSCC-EEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred             CCCCCcccCceEEEEECCCCCCCe-EEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEE
Confidence                   27799999999977541 12211  11111112467899999999999974      2689999999999999


Q ss_pred             eecc
Q 001295          979 KQWV  982 (1106)
Q Consensus       979 ~~~~  982 (1106)
                      ..+.
T Consensus       519 ~~i~  522 (543)
T 1nir_A          519 AVVK  522 (543)
T ss_dssp             EEEC
T ss_pred             Eeec
Confidence            8876

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.92  E-value=6.9e-24  Score=241.59  Aligned_cols=302  Identities=11%  Similarity=0.086  Sum_probs=221.4

Q ss_pred             cCCeeEEEEcCCCCceEEEEec----CCC----cEEEEeC--CCCcee--EEEeccCCCeEEEecccc------------
Q 001295          457 VGGVNDIAFSHPNKQLCVITCG----DDK----TIKVWDA--TNGAKQ--YIFEGHEAPVYSVCPHHK------------  512 (1106)
Q Consensus       457 ~~~V~~~~~s~d~~~~~l~s~~----~d~----~i~iwd~--~~~~~~--~~~~~h~~~v~~~~~~~~------------  512 (1106)
                      ...+...+|.+.|.. ++++|+    .||    +|++||+  .+++++  ..+.+|...+..+++.+.            
T Consensus        62 ~~~~~~~~w~~~g~~-~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~  140 (415)
T 2hqs_A           62 AQEVQPAAWSALGID-AVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG  140 (415)
T ss_dssp             GGGCCHHHHHTTTCC-EEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred             ccCcCHHHHHhcCCC-EEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence            357888899999886 677776    467    8999999  899887  458899888887776542            


Q ss_pred             CCceEEEEEecC------CeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEEC
Q 001295          513 ENIQFIFSTALD------GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD  586 (1106)
Q Consensus       513 ~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  586 (1106)
                      ..+..++.++.+      +.|++||++. .....+..+...+.+++|+|||+                     +|++++.
T Consensus       141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~---------------------~la~~s~  198 (415)
T 2hqs_A          141 AFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGS---------------------KLAYVTF  198 (415)
T ss_dssp             CTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSS---------------------EEEEEEC
T ss_pred             cCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCC---------------------EEEEEEe
Confidence            012456555554      7999999974 44445555555555555555554                     7888887


Q ss_pred             CC---eEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEE-EEeCCCc--EEEEEccCCchhhhhhcccccccccCC
Q 001295          587 DF---SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA-VSTNDNG--IKILATSDGIRLLRTFENLAYDASRTS  660 (1106)
Q Consensus       587 d~---~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~  660 (1106)
                      ++   .|++||+.+++... +..+  ...+.+++|+|||++|+ +++.++.  |++||+.++. . ..+           
T Consensus       199 ~~~~~~i~~~d~~tg~~~~-l~~~--~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~-~-~~l-----------  262 (415)
T 2hqs_A          199 ESGRSALVIQTLANGAVRQ-VASF--PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-I-RQV-----------  262 (415)
T ss_dssp             TTSSCEEEEEETTTCCEEE-EECC--SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-E-EEC-----------
T ss_pred             cCCCcEEEEEECCCCcEEE-eecC--CCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC-E-EeC-----------
Confidence            75   99999999988764 3333  33688999999999888 5665555  8888887651 1 100           


Q ss_pred             CCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCcc
Q 001295          661 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN  740 (1106)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~  740 (1106)
                                                                                                     .
T Consensus       263 -------------------------------------------------------------------------------~  263 (415)
T 2hqs_A          263 -------------------------------------------------------------------------------T  263 (415)
T ss_dssp             -------------------------------------------------------------------------------C
T ss_pred             -------------------------------------------------------------------------------c
Confidence                                                                                           1


Q ss_pred             ccccceEEEEEcCCCceEEEeec-Cc--eEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEE
Q 001295          741 LRATKISRLIFTNSGNAILALAS-NA--IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA  817 (1106)
Q Consensus       741 ~~~~~i~~~~~s~~~~~l~~~~~-dg--~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~  817 (1106)
                      .+...+.+++|+|||+.|++++. ++  .|.+|++.                      ++....  +.  .+...+.+++
T Consensus       264 ~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~----------------------~~~~~~--l~--~~~~~~~~~~  317 (415)
T 2hqs_A          264 DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN----------------------GGAPQR--IT--WEGSQNQDAD  317 (415)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT----------------------SSCCEE--CC--CSSSEEEEEE
T ss_pred             CCCCcccceEECCCCCEEEEEECCCCCcEEEEEECC----------------------CCCEEE--Ee--cCCCcccCeE
Confidence            14456889999999999988886 45  45555543                      333222  11  1556788999


Q ss_pred             EecCCCEEEEEe-C---CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCC---cEEEEEeecceEEEEe
Q 001295          818 LSKNDSYVMSAS-G---GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS---SIQIYNVRVDEVKSKL  890 (1106)
Q Consensus       818 ~s~~~~~l~~~s-d---g~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg---~v~iwd~~~~~~~~~l  890 (1106)
                      |+|||++|++++ +   ..|++||+.+++.. .+..+. .+.+++|+| ++++|++++.++   .|++||+. ++....+
T Consensus       318 ~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~sp-dg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l  393 (415)
T 2hqs_A          318 VSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTD-GRFKARL  393 (415)
T ss_dssp             ECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECT-TSSEEEEEEEETTEEEEEEEETT-SCCEEEC
T ss_pred             ECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcC-CCCEEEEEEcCCCccEEEEEECC-CCcEEEe
Confidence            999999999887 3   47999999988764 455454 899999999 899888888777   79999986 5567889


Q ss_pred             cCcccCeeEEEEecCC
Q 001295          891 KGHSKRITGLAFSHAL  906 (1106)
Q Consensus       891 ~~h~~~V~~l~~s~d~  906 (1106)
                      .+|.+.|.+++|+|.-
T Consensus       394 ~~~~~~v~~~~~~~~~  409 (415)
T 2hqs_A          394 PATDGQVKFPAWSPYL  409 (415)
T ss_dssp             CCSSSEEEEEEECCCC
T ss_pred             eCCCCCCcCCcccccc
Confidence            9999999999999864

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.92  E-value=7.2e-23  Score=254.12  Aligned_cols=258  Identities=14%  Similarity=0.093  Sum_probs=176.2

Q ss_pred             CCCcEEEEEecCCCeEEEEEec-cC-----cEEEEecCCcceeEEeeeeeec-----cCcCCccccccccCCCCcCeEEE
Q 001295          350 GSSPMSMDFHPVQQTLLLVGTN-VG-----DIGLWEVGSRERLVLRNFKVWD-----LGACSMPLQAALVKDPGVSVNRV  418 (1106)
Q Consensus       350 ~~~v~~~~~sp~g~~llatg~~-dg-----~i~iwd~~~~~~~~~~~~~~~d-----~~~~~~~~~~~~~~~h~~~V~~l  418 (1106)
                      ...|.+++|||||++ |++++. |+     .|.+||+.+++...........     +...........-......|.++
T Consensus        36 ~~~~~~~~~SpdG~~-la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSR-VTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY  114 (741)
T ss_dssp             CCCCEEEEECTTSSE-EEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred             CCCCCCceEecCCCE-EEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence            467999999999996 777776 88     8999999998765431110000     00000000000000001348899


Q ss_pred             EEccCCCEEEEEeCCCeEEEEEccCC---ceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeE
Q 001295          419 IWSPDGSLFGVAYSRHIVQIYSYHGG---DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY  495 (1106)
Q Consensus       419 ~~spdg~~las~~~d~~v~iwd~~~~---~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~  495 (1106)
                      +|||||++|++++. +.|.+||+.++   +..    .+..|...+.+++|||||+  .|+.++ ++.|++||+.+++...
T Consensus       115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~----~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~~~~  186 (741)
T 2ecf_A          115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR----QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGRQMQ  186 (741)
T ss_dssp             EECTTSSEEEEEET-TEEEEEESSSCSTTSCC----BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTEEEE
T ss_pred             EECCCCCEEEEEeC-CcEEEEECCCCCcceEE----EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCCEEE
Confidence            99999999999986 99999999987   433    3667888999999999999  677766 4699999999988766


Q ss_pred             EEeccCCC----------------eEEEeccccCCceEEEEEecCC---------------------------------e
Q 001295          496 IFEGHEAP----------------VYSVCPHHKENIQFIFSTALDG---------------------------------K  526 (1106)
Q Consensus       496 ~~~~h~~~----------------v~~~~~~~~~~~~~l~s~~~dg---------------------------------~  526 (1106)
                      ....+...                +.+++|++  ||++|++++.|+                                 .
T Consensus       187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp--Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~  264 (741)
T 2ecf_A          187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAP--DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK  264 (741)
T ss_dssp             CCCCCCSSEEESCCCHHHHHHSCCCCSEEECT--TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred             eccCCccceeccccceeeeeccccccceEECC--CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence            55444432                36677754  557888887765                                 7


Q ss_pred             EEEEeCCC-CCceeEee--CCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEE-----CCCeEEEEECCCc
Q 001295          527 IKAWLYDN-LGSRVDYE--APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-----DDFSIKFWDMDSV  598 (1106)
Q Consensus       527 i~iwd~~~-~~~~~~~~--~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-----~d~~i~iwd~~~~  598 (1106)
                      |.+||+.+ ++......  .+...+..++| |||+                     +|++++     .+..|++||+.++
T Consensus       265 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~---------------------~l~~~~~~~~~~~~~i~~~d~~~g  322 (741)
T 2ecf_A          265 LGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQ---------------------HLSFQRQSRDQKKLDLVEVTLASN  322 (741)
T ss_dssp             EEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETT---------------------EEEEEEEETTSSEEEEEEEETTTC
T ss_pred             EEEEECCCCCceEEecCCCCcceEEEEEEe-CCCC---------------------EEEEEEecccCCeEEEEEEECCCC
Confidence            88888876 55433221  23344555555 5554                     566544     3678999999999


Q ss_pred             ceeEEEccCCC--CCCcCeEEEccCCCEEEEEeCCCcEEEEEcc
Q 001295          599 QLLTSIDADGG--LPASPRIRFNKDGCLLAVSTNDNGIKILATS  640 (1106)
Q Consensus       599 ~~~~~~~~~~~--~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~  640 (1106)
                      +....+..+..  ...+..++|+|||+++++++.+|.++||.+.
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~  366 (741)
T 2ecf_A          323 QQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRID  366 (741)
T ss_dssp             CEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEEC
T ss_pred             ceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEc
Confidence            88777654431  1135689999999998888888888888654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.92  E-value=2e-23  Score=237.68  Aligned_cols=242  Identities=9%  Similarity=0.009  Sum_probs=178.1

Q ss_pred             CCCcEEEEEecCCCeEEEEEe----ccC----cEEEEec--CCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEE
Q 001295          350 GSSPMSMDFHPVQQTLLLVGT----NVG----DIGLWEV--GSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI  419 (1106)
Q Consensus       350 ~~~v~~~~~sp~g~~llatg~----~dg----~i~iwd~--~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~  419 (1106)
                      ...|...+|++.|..++++|+    .||    +|+|||+  .+++.+....                 +.+|...+..++
T Consensus        62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~-----------------~~~~~~~~~~~~  124 (415)
T 2hqs_A           62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNS-----------------YKVNKQWLRYAG  124 (415)
T ss_dssp             GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEE-----------------EEECGGGHHHHH
T ss_pred             ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeE-----------------EEcChhHHHHHH
Confidence            357888899999987788887    357    8999999  8888764322                 456666777777


Q ss_pred             Ecc--------------CCCEEEEEeCC------CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecC
Q 001295          420 WSP--------------DGSLFGVAYSR------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD  479 (1106)
Q Consensus       420 ~sp--------------dg~~las~~~d------~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~  479 (1106)
                      +++              .+..++.++.+      +.|++||+.++. .+   .+.+|...|.+++|+|||+  .|++++.
T Consensus       125 ~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~---~l~~~~~~v~~~~~Spdg~--~la~~s~  198 (415)
T 2hqs_A          125 HTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF---VVHRSPQPLMSPAWSPDGS--KLAYVTF  198 (415)
T ss_dssp             HHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE---EEEEESSCEEEEEECTTSS--EEEEEEC
T ss_pred             HHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CE---EEeCCCCcceeeEEcCCCC--EEEEEEe
Confidence            665              26677777654      799999998644 33   4778999999999999999  7888887


Q ss_pred             CC---cEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEE-EEecCCe--EEEEeCCCCCceeEeeCCCCeeEEEEE
Q 001295          480 DK---TIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIF-STALDGK--IKAWLYDNLGSRVDYEAPGRWCTTMAY  553 (1106)
Q Consensus       480 d~---~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~  553 (1106)
                      ++   .|++||+.+++.. .+..|...+.+++|+|+  |+.|+ +++.++.  |++||+.++.. ..+..+...+.+++|
T Consensus       199 ~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spd--g~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~  274 (415)
T 2hqs_A          199 ESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPD--GSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTW  274 (415)
T ss_dssp             TTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTT--SSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEE
T ss_pred             cCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCC--CCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEE
Confidence            75   9999999998875 56778889999998765  46566 6766654  99999987543 444555555666666


Q ss_pred             ecCCCeEEEeeeccceeEEEEcCCCCEEEEEEC-CC--eEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeC
Q 001295          554 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD-DF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN  630 (1106)
Q Consensus       554 s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  630 (1106)
                      +|||+                     +|++++. ++  .|++||+.+++.. .+..+  ...+.+++|+|||++|++++.
T Consensus       275 spdg~---------------------~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~--~~~~~~~~~spdG~~l~~~~~  330 (415)
T 2hqs_A          275 FPDSQ---------------------NLAFTSDQAGRPQVYKVNINGGAPQ-RITWE--GSQNQDADVSSDGKFMVMVSS  330 (415)
T ss_dssp             CTTSS---------------------EEEEEECTTSSCEEEEEETTSSCCE-ECCCS--SSEEEEEEECTTSSEEEEEEE
T ss_pred             CCCCC---------------------EEEEEECCCCCcEEEEEECCCCCEE-EEecC--CCcccCeEECCCCCEEEEEEC
Confidence            66655                     6777665 44  7888899887643 33333  235778999999999988876


Q ss_pred             C---CcEEEEEccCC
Q 001295          631 D---NGIKILATSDG  642 (1106)
Q Consensus       631 d---g~i~iwd~~~~  642 (1106)
                      +   ..|++||+.++
T Consensus       331 ~~g~~~i~~~d~~~~  345 (415)
T 2hqs_A          331 NGGQQHIAKQDLATG  345 (415)
T ss_dssp             CSSCEEEEEEETTTC
T ss_pred             cCCceEEEEEECCCC
Confidence            4   46777776544

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.91  E-value=5.4e-23  Score=255.29  Aligned_cols=327  Identities=13%  Similarity=0.049  Sum_probs=225.5

Q ss_pred             CcCeEEEEEccCCCEEEEEeC-CC-----eEEEEEccCCceeeeeeeecccc------------------------CCee
Q 001295          412 GVSVNRVIWSPDGSLFGVAYS-RH-----IVQIYSYHGGDEVRQHLEIDAHV------------------------GGVN  461 (1106)
Q Consensus       412 ~~~V~~l~~spdg~~las~~~-d~-----~v~iwd~~~~~~~~~~~~l~~h~------------------------~~V~  461 (1106)
                      ...|.+++|||||++|++++. |+     .|++||+.+++...   .+..|.                        ..|.
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  112 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRL---LVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV  112 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEE---EECGGGTC--------------------CCEESC
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeE---ccchhhcccccccccchhhhhhhhhhhccccCcc
Confidence            457999999999999999998 88     89999999987544   233332                        2389


Q ss_pred             EEEEcCCCCceEEEEecCCCcEEEEeCCCCc--eeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCcee
Q 001295          462 DIAFSHPNKQLCVITCGDDKTIKVWDATNGA--KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV  539 (1106)
Q Consensus       462 ~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  539 (1106)
                      +++|+|||+  +|++++. +.|++||+.++.  ....+..|...+..++|+|  ||++|+.++ ++.|++||+.++....
T Consensus       113 ~~~~SpDg~--~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SP--DG~~la~~~-~~~i~~~d~~~g~~~~  186 (741)
T 2ecf_A          113 DYQWSPDAQ--RLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSP--KGGFVSFIR-GRNLWVIDLASGRQMQ  186 (741)
T ss_dssp             CCEECTTSS--EEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECT--TSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred             eeEECCCCC--EEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCC--CCCEEEEEe-CCcEEEEecCCCCEEE
Confidence            999999999  6777765 999999999883  4556777888999999865  557888877 5699999998754433


Q ss_pred             EeeCCCCe----------------eEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCC---------------
Q 001295          540 DYEAPGRW----------------CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF---------------  588 (1106)
Q Consensus       540 ~~~~~~~~----------------v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---------------  588 (1106)
                      ....+...                +..++|+|||+                     +|++++.|+               
T Consensus       187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~---------------------~l~~~~~d~~~~~~~~~~~~~p~~  245 (741)
T 2ecf_A          187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDS---------------------AIAYARIDESPVPVQKRYEVYADR  245 (741)
T ss_dssp             CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSS---------------------CEEEEEEECTTSCEEEEEEECSSC
T ss_pred             eccCCccceeccccceeeeeccccccceEECCCCC---------------------EEEEEEEcCCCCceEecCCCCCCc
Confidence            22222221                24455555555                     454444333               


Q ss_pred             ------------------eEEEEECCC-cceeEEEccCCCCCCcCeEEEccCCCEEEEEeC-----CCcEEEEEccCCch
Q 001295          589 ------------------SIKFWDMDS-VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN-----DNGIKILATSDGIR  644 (1106)
Q Consensus       589 ------------------~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-----dg~i~iwd~~~~~~  644 (1106)
                                        .|++||+.+ ++.........+...+..++| |||++|++++.     +..|++||+.++. 
T Consensus       246 ~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~-  323 (741)
T 2ecf_A          246 TDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ-  323 (741)
T ss_dssp             EEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC-
T ss_pred             ccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc-
Confidence                              789999988 876554433223446889999 99999997764     3456666665441 


Q ss_pred             hhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecC
Q 001295          645 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT  724 (1106)
Q Consensus       645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~  724 (1106)
                      ....+.                                                                          
T Consensus       324 ~~~~~~--------------------------------------------------------------------------  329 (741)
T 2ecf_A          324 QRVLAH--------------------------------------------------------------------------  329 (741)
T ss_dssp             EEEEEE--------------------------------------------------------------------------
T ss_pred             eEEEEE--------------------------------------------------------------------------
Confidence            100000                                                                          


Q ss_pred             CCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCcccccc
Q 001295          725 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV  804 (1106)
Q Consensus       725 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  804 (1106)
                                                          ...++                                       
T Consensus       330 ------------------------------------~~~~~---------------------------------------  334 (741)
T 2ecf_A          330 ------------------------------------ETSPT---------------------------------------  334 (741)
T ss_dssp             ------------------------------------EECSS---------------------------------------
T ss_pred             ------------------------------------cCCCC---------------------------------------
Confidence                                                00000                                       


Q ss_pred             CCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcC-CCceeeeecCCCCCeeEE-EEecCCCceE-EEeeCCC--cEEE
Q 001295          805 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMM-TFKTMATFMPPPPAATFL-AFHPQDNNII-AIGMDDS--SIQI  878 (1106)
Q Consensus       805 ~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~-~~~~~~~~~~~~~~v~~l-~~s~~d~~~l-a~g~~dg--~v~i  878 (1106)
                          .-..+..++|+|||+++++++ +|.++||.+. ++. ...+..+...+..+ .|+| +++.| ++++.++  .++|
T Consensus       335 ----~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~-dg~~l~~~~~~~~~~~~~l  408 (741)
T 2ecf_A          335 ----WVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDE-KAGLAYFRAGIESARESQI  408 (741)
T ss_dssp             ----CCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEET-TTTEEEEEECSSCTTCBEE
T ss_pred             ----cCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeC-CCCEEEEEEeCCCCceEEE
Confidence                001234567888888777776 6767777664 344 67777777888887 5999 67655 5566665  8999


Q ss_pred             EEeec-ceEEEEecCcccCeeEEEEecCCCEEEEEcCC----CcEEEEeCCCc
Q 001295          879 YNVRV-DEVKSKLKGHSKRITGLAFSHALNVLVSSGAD----SQLCVWSSDGW  926 (1106)
Q Consensus       879 wd~~~-~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D----g~i~vwd~~~~  926 (1106)
                      |++.. ++....+.. ...+.+++|||||++|+....+    ..+.+|+....
T Consensus       409 ~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~  460 (741)
T 2ecf_A          409 YAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE  460 (741)
T ss_dssp             EEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred             EEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence            99975 665667765 6678899999999998876544    46888987653

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.91  E-value=2.5e-23  Score=257.58  Aligned_cols=235  Identities=9%  Similarity=0.064  Sum_probs=166.1

Q ss_pred             CCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCc---CeEEEEEccCCCEE
Q 001295          351 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV---SVNRVIWSPDGSLF  427 (1106)
Q Consensus       351 ~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~---~V~~l~~spdg~~l  427 (1106)
                      ..+.+++|||||++ +++ +.||+|++||+.+++....                   +.+|..   .|.+++|||||++|
T Consensus        17 ~~~~~~~~spdg~~-~~~-~~dg~i~~~d~~~g~~~~~-------------------~~~~~~~~~~v~~~~~SpDg~~l   75 (723)
T 1xfd_A           17 IHDPEAKWISDTEF-IYR-EQKGTVRLWNVETNTSTVL-------------------IEGKKIESLRAIRYEISPDREYA   75 (723)
T ss_dssp             CCCCCCCBSSSSCB-CCC-CSSSCEEEBCGGGCCCEEE-------------------ECTTTTTTTTCSEEEECTTSSEE
T ss_pred             ccccccEEcCCCcE-EEE-eCCCCEEEEECCCCcEEEE-------------------eccccccccccceEEECCCCCEE
Confidence            34678999999994 666 6799999999999876542                   445544   49999999999999


Q ss_pred             EEEeCC---------CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEe
Q 001295          428 GVAYSR---------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE  498 (1106)
Q Consensus       428 as~~~d---------~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  498 (1106)
                      |+++.+         +.|.+||+.+++. ..+....+|...+..++|||||+  .|+.++. +.|++||+.+++......
T Consensus        76 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~~~~~~  151 (723)
T 1xfd_A           76 LFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQAIRVVS  151 (723)
T ss_dssp             EEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCCEEEEC
T ss_pred             EEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCceEEEec
Confidence            999864         7888999999875 33333445666799999999999  5676665 799999999988877666


Q ss_pred             ccCCCe------------------EEEeccccCCceEEEEEecC-CeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCe
Q 001295          499 GHEAPV------------------YSVCPHHKENIQFIFSTALD-GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR  559 (1106)
Q Consensus       499 ~h~~~v------------------~~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~  559 (1106)
                      .+...+                  .+++|+|  ||+.|++++.| +.+.+|++......     ....+..+.|.++|. 
T Consensus       152 ~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp--Dg~~la~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~G~-  223 (723)
T 1xfd_A          152 TGKEGVIYNGLSDWLYEEEILKTHIAHWWSP--DGTRLAYAAINDSRVPIMELPTYTGS-----IYPTVKPYHYPKAGS-  223 (723)
T ss_dssp             CCBTTTEEEEECCHHHHHTTSSSSEEEEECT--TSSEEEEEEEECTTSCEEEECCCSSS-----SSCCCEEEECCBTTS-
T ss_pred             CCCCCceECcccceeEEEEeccCcceEEECC--CCCEEEEEEECCCccceEEeeccCCc-----CCCcceeccCCCCCC-
Confidence            544433                  6788765  45778777654 56777876532211     112244455555443 


Q ss_pred             EEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCC----CCCCcCeEEEccCCCEEEEEeCC----
Q 001295          560 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG----GLPASPRIRFNKDGCLLAVSTND----  631 (1106)
Q Consensus       560 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----~~~~v~~v~~s~~~~~l~~~~~d----  631 (1106)
                                          .    ..+..|++||+.+++....+..+.    +...+..++|+|||+++++....    
T Consensus       224 --------------------~----~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~  279 (723)
T 1xfd_A          224 --------------------E----NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNV  279 (723)
T ss_dssp             --------------------C----CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCE
T ss_pred             --------------------C----CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCe
Confidence                                1    234589999999988656665331    12357789999999988776532    


Q ss_pred             CcEEEEEccCC
Q 001295          632 NGIKILATSDG  642 (1106)
Q Consensus       632 g~i~iwd~~~~  642 (1106)
                      ..|++||+.++
T Consensus       280 ~~i~~~d~~~g  290 (723)
T 1xfd_A          280 SILTLCDATTG  290 (723)
T ss_dssp             EEEEEEETTTC
T ss_pred             EEEEEEeCCCC
Confidence            45677776554

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.89  E-value=1.3e-21  Score=241.22  Aligned_cols=249  Identities=8%  Similarity=0.019  Sum_probs=156.5

Q ss_pred             CcEEEEEecCCCeEEEEEeccCcEEEEecCCcce--eEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEE
Q 001295          352 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRER--LVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV  429 (1106)
Q Consensus       352 ~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las  429 (1106)
                      .+..+.|+  |.. +++++.|+ | +||+.+++.  .......  .+.. ...........+...|.+++|||| ++++.
T Consensus        27 ~~~~~~w~--g~~-~~~~~~~~-i-~~d~~tg~~~~~~l~~~~--~~~~-~l~~~~~~~~~~~~~v~~~~~spd-~~~~~   97 (706)
T 2z3z_A           27 YVVGLQWM--GDN-YVFIEGDD-L-VFNKANGKSAQTTRFSAA--DLNA-LMPEGCKFQTTDAFPSFRTLDAGR-GLVVL   97 (706)
T ss_dssp             -CTTCEEE--TTE-EEEEETTE-E-EEEC-------CEEEEHH--HHHT-TC-----------CCCEEEEETTT-TEEEE
T ss_pred             cCCCCcCc--CCe-EEEEeCCc-E-EEECCCCcEeeEEeechh--Hhhh-hccchhccccccccCceeEEECCC-CeEEE
Confidence            35567888  554 55566677 8 999999876  2211000  0000 000000000112257999999999 66666


Q ss_pred             EeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCC-----CceeEEEeccCCC-
Q 001295          430 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-----GAKQYIFEGHEAP-  503 (1106)
Q Consensus       430 ~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~~h~~~-  503 (1106)
                      +. ++.|++||+.+++...    +..+...+.+++|+|||+  .|+++ .|+.|++||+.+     ++.......+... 
T Consensus        98 ~~-~~~i~~~d~~~~~~~~----l~~~~~~~~~~~~SpdG~--~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~  169 (706)
T 2z3z_A           98 FT-QGGLVGFDMLARKVTY----LFDTNEETASLDFSPVGD--RVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETL  169 (706)
T ss_dssp             EE-TTEEEEEETTTTEEEE----EECCTTCCTTCEECTTSS--EEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTE
T ss_pred             EE-CCEEEEEECCCCceEE----ccCCcccccCCcCCCCCC--EEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCe
Confidence            54 5999999999886543    455777899999999999  56664 679999999998     8776554444443 


Q ss_pred             -------------eEEEeccccCCceEEEEEe---------------------------------cCCeEEEEeCCCCCc
Q 001295          504 -------------VYSVCPHHKENIQFIFSTA---------------------------------LDGKIKAWLYDNLGS  537 (1106)
Q Consensus       504 -------------v~~~~~~~~~~~~~l~s~~---------------------------------~dg~i~iwd~~~~~~  537 (1106)
                                   +.+++|++  ||++|++++                                 .+..|++||+.++..
T Consensus       170 ~~g~~~~~ee~~~~~~~~~Sp--Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~  247 (706)
T 2z3z_A          170 VYGQAVHQREFGIEKGTFWSP--KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT  247 (706)
T ss_dssp             EESSCCGGGCTTCCCSEEECT--TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE
T ss_pred             EcccchhhhhcCCCceEEECC--CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce
Confidence                         36777755  557888887                                 446789999876543


Q ss_pred             eeEee--CCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCC-----eEEEEECCCcceeEEEccCCCC
Q 001295          538 RVDYE--APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF-----SIKFWDMDSVQLLTSIDADGGL  610 (1106)
Q Consensus       538 ~~~~~--~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~  610 (1106)
                      .....  .+...+..++|+||                     |+++++++.++     .|++||+.+++....+......
T Consensus       248 ~~~~~~~~~~~~~~~~~~spd---------------------g~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~  306 (706)
T 2z3z_A          248 VYLQTGEPKEKFLTNLSWSPD---------------------ENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDK  306 (706)
T ss_dssp             EECCCCSCTTCEEEEEEECTT---------------------SSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECS
T ss_pred             EeeccCCCCceeEeeEEEECC---------------------CCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCC
Confidence            32221  22334445555554                     45677766654     8999999998433333211111


Q ss_pred             ---CCcCeEEEcc--CCCEEEEEeCCCcEEEEEcc
Q 001295          611 ---PASPRIRFNK--DGCLLAVSTNDNGIKILATS  640 (1106)
Q Consensus       611 ---~~v~~v~~s~--~~~~l~~~~~dg~i~iwd~~  640 (1106)
                         ..+.+++|+|  ||++++++..++.+++|.+.
T Consensus       307 ~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~  341 (706)
T 2z3z_A          307 HYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYD  341 (706)
T ss_dssp             SCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEE
T ss_pred             CeECccCCceeecCCCCEEEEEEccCCccEEEEEE
Confidence               2346789999  99999999999999888764

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.89  E-value=2.2e-21  Score=239.26  Aligned_cols=284  Identities=10%  Similarity=0.072  Sum_probs=203.2

Q ss_pred             ccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCC
Q 001295          743 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND  822 (1106)
Q Consensus       743 ~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~  822 (1106)
                      ...|.+++|+|| +.++.+ .++.+++||+.+                      +.....  .  .+...+.+++|||||
T Consensus        81 ~~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~----------------------~~~~~l--~--~~~~~~~~~~~SpdG  132 (706)
T 2z3z_A           81 AFPSFRTLDAGR-GLVVLF-TQGGLVGFDMLA----------------------RKVTYL--F--DTNEETASLDFSPVG  132 (706)
T ss_dssp             -CCCEEEEETTT-TEEEEE-ETTEEEEEETTT----------------------TEEEEE--E--CCTTCCTTCEECTTS
T ss_pred             ccCceeEEECCC-CeEEEE-ECCEEEEEECCC----------------------CceEEc--c--CCcccccCCcCCCCC
Confidence            356899999999 656555 458999998753                      222111  1  145567889999999


Q ss_pred             CEEEEEeCCeEEEEEcCC-----CceeeeecCCCCC--------------eeEEEEecCCCceEEEee------------
Q 001295          823 SYVMSASGGKISLFNMMT-----FKTMATFMPPPPA--------------ATFLAFHPQDNNIIAIGM------------  871 (1106)
Q Consensus       823 ~~l~~~sdg~i~vwd~~~-----~~~~~~~~~~~~~--------------v~~l~~s~~d~~~la~g~------------  871 (1106)
                      ++|+++.++.|++||+.+     ++.......+...              +.+++||| |+++|++++            
T Consensus       133 ~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~  211 (706)
T 2z3z_A          133 DRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIV  211 (706)
T ss_dssp             SEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEE
T ss_pred             CEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEee
Confidence            999998899999999998     7766554444333              48999999 899999887            


Q ss_pred             ---------------------CCCcEEEEEeecceEEEEec--CcccCeeEEEEecCCCEEEEEcCCC-----cEEEEeC
Q 001295          872 ---------------------DDSSIQIYNVRVDEVKSKLK--GHSKRITGLAFSHALNVLVSSGADS-----QLCVWSS  923 (1106)
Q Consensus       872 ---------------------~dg~v~iwd~~~~~~~~~l~--~h~~~V~~l~~s~d~~~l~s~s~Dg-----~i~vwd~  923 (1106)
                                           .+..|++||+.+++......  .|...+.+++|+|||++|++++.|+     .|++||+
T Consensus       212 ~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~  291 (706)
T 2z3z_A          212 DYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDA  291 (706)
T ss_dssp             ECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEET
T ss_pred             ccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEEC
Confidence                                 45789999999988655442  5777899999999999999988775     8999999


Q ss_pred             CCcccccceeecccCCCCCCCCCCceEEEcC--CCcEEEEE-eCCeEEEEecC-CceEeeecccCCCCCCeeE-EEECCC
Q 001295          924 DGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ--DQIHFLVV-HETQLAIFETT-KLECVKQWVPRESSAPITH-ATFSCD  998 (1106)
Q Consensus       924 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--dg~~l~~~-~d~~v~i~d~~-~~~~~~~~~~~~h~~~v~~-l~~s~d  998 (1106)
                      .+++.... ....  ........+..++|+|  ||++++++ .++.+++|++. ++..+..+.  .|...+.+ ++|+||
T Consensus       292 ~~g~~~~~-~~~~--~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~--~~~~~v~~~~~~spd  366 (706)
T 2z3z_A          292 ETGRFVRT-LFVE--TDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVT--KGEWEVTNFAGFDPK  366 (706)
T ss_dssp             TTCCEEEE-EEEE--ECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECC--CSSSCEEEEEEECTT
T ss_pred             CCCceeeE-EEEc--cCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecC--CCCeEEEeeeEEcCC
Confidence            98732211 1111  1111111346789999  99988885 66778888775 566666654  56677877 799999


Q ss_pred             CCEEEEEEcC-C----eEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCC----CcEEEEee
Q 001295          999 SQLVYACFLD-A----TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD----GGVHVFEP 1069 (1106)
Q Consensus       999 ~~~l~t~s~D-g----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~D----g~v~vW~~ 1069 (1106)
                      |+.|+.++.+ +    .|+.||+.+++.. .+.      +   ...+.  .++|+| |+++++..+.+    +.|++||+
T Consensus       367 g~~l~~~~~~~~~~~~~l~~~d~~~~~~~-~l~------~---~~~~~--~~~~sp-dg~~l~~~~~~~~~p~~i~l~d~  433 (706)
T 2z3z_A          367 GTRLYFESTEASPLERHFYCIDIKGGKTK-DLT------P---ESGMH--RTQLSP-DGSAIIDIFQSPTVPRKVTVTNI  433 (706)
T ss_dssp             SSEEEEEESSSCTTCBEEEEEETTCCCCE-ESC------C---SSSEE--EEEECT-TSSEEEEEEECSSCSCEEEEEES
T ss_pred             CCEEEEEecCCCCceEEEEEEEcCCCCce-ecc------C---CCceE--EEEECC-CCCEEEEEecCCCCCcEEEEEEC
Confidence            9988766544 3    6777788777633 222      1   11244  799999 68887766444    46999999


Q ss_pred             cCCC
Q 001295         1070 LESE 1073 (1106)
Q Consensus      1070 ~~~~ 1073 (1106)
                      .+++
T Consensus       434 ~~~~  437 (706)
T 2z3z_A          434 GKGS  437 (706)
T ss_dssp             SSCE
T ss_pred             CCCe
Confidence            8876

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.89  E-value=4.8e-21  Score=213.38  Aligned_cols=300  Identities=10%  Similarity=0.140  Sum_probs=200.2

Q ss_pred             cccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecC-ceEEEeeccccccCCCCcccccc
Q 001295          709 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN-AIHLLWKWQRTERNSSGKATASV  787 (1106)
Q Consensus       709 l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~  787 (1106)
                      +++++.++.|.+|++...........+     .+...+..++|+|+++++++++.+ +.+.+|++...            
T Consensus         8 ~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~------------   70 (343)
T 1ri6_A            8 YIASPESQQIHVWNLNHEGALTLTQVV-----DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPD------------   70 (343)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEE-----ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTT------------
T ss_pred             EEeCCCCCeEEEEEECCCCcEEEeeeE-----ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCC------------
Confidence            344477899999999642211122221     255678899999999988888886 99999987511            


Q ss_pred             CccccCCCCCCccc-cccCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEc---CCCceeeeecCCCCCeeEEEEec
Q 001295          788 APQLWQPPSGIMMT-NDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNM---MTFKTMATFMPPPPAATFLAFHP  861 (1106)
Q Consensus       788 ~~~~w~~~~~~~~~-~~~~~~~~~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~---~~~~~~~~~~~~~~~v~~l~~s~  861 (1106)
                              ++.... ..+.   ....+..++|+|++++|++++  ++.|.+||+   ...+....+..+ ..+.+++|+|
T Consensus        71 --------~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~  138 (343)
T 1ri6_A           71 --------DGALTFAAESA---LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISP  138 (343)
T ss_dssp             --------TCCEEEEEEEE---CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECT
T ss_pred             --------CCceeeccccc---cCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECC
Confidence                    111110 0011   123678999999999887776  688999999   444455555543 4589999999


Q ss_pred             CCCceEEEee-CCCcEEEEEeec-ceEEE----EecC-cccCeeEEEEecCCCEEEEE-cCCCcEEEEeCCC--cccccc
Q 001295          862 QDNNIIAIGM-DDSSIQIYNVRV-DEVKS----KLKG-HSKRITGLAFSHALNVLVSS-GADSQLCVWSSDG--WEKQKN  931 (1106)
Q Consensus       862 ~d~~~la~g~-~dg~v~iwd~~~-~~~~~----~l~~-h~~~V~~l~~s~d~~~l~s~-s~Dg~i~vwd~~~--~~~~~~  931 (1106)
                       ++++|++++ .++.|++||+.+ ++...    .+.. ....+.+++|+|++++|+++ ..++.|.+|++..  ++....
T Consensus       139 -dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~  217 (343)
T 1ri6_A          139 -DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECV  217 (343)
T ss_dssp             -TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEE
T ss_pred             -CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEE
Confidence             787777776 899999999987 65432    2332 34578899999999977554 5889999999954  332111


Q ss_pred             eeecccCCCCCCCCCCceEEEcCCCcEEEE-E-eCCeEEEEecC----CceEeeecccCCCCCCeeEEEECCCCCEEEEE
Q 001295          932 RFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V-HETQLAIFETT----KLECVKQWVPRESSAPITHATFSCDSQLVYAC 1005 (1106)
Q Consensus       932 ~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~-~d~~v~i~d~~----~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~ 1005 (1106)
                      ...............+..++|+|+|++|++ . .++.|.+||+.    +.+.+..+.  .+. .+.+++|+|||++|+++
T Consensus       218 ~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~--~~~-~~~~~~~s~dg~~l~~~  294 (343)
T 1ri6_A          218 QTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP--TET-QPRGFNVDHSGKYLIAA  294 (343)
T ss_dssp             EEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE--CSS-SCCCEEECTTSSEEEEE
T ss_pred             eeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeec--CCC-ccceEEECCCCCEEEEe
Confidence            122211111111124557999999998886 4 57899999998    334444443  223 38999999999998888


Q ss_pred             E-cCCeEEEEEc--CCceeEEeeCCCcccCCCCCCCCccceEEEEeCC
Q 001295         1006 F-LDATVCVFSA--ANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ 1050 (1106)
Q Consensus      1006 s-~Dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 1050 (1106)
                      + .|+.|.+|++  .++++...-.    ++.+     ..|..++|.++
T Consensus       295 ~~~~~~v~v~~~d~~~g~~~~~~~----~~~g-----~~p~~i~~~~~  333 (343)
T 1ri6_A          295 GQKSHHISVYEIVGEQGLLHEKGR----YAVG-----QGPMWVVVNAH  333 (343)
T ss_dssp             CTTTCEEEEEEEETTTTEEEEEEE----EECS-----SSCCEEEEEEE
T ss_pred             cCCCCeEEEEEEcCCCceeeEccc----cccC-----CCCeeEEEEcc
Confidence            7 6899999955  4665432211    1112     23457888874

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.89  E-value=1.5e-21  Score=241.65  Aligned_cols=384  Identities=12%  Similarity=0.083  Sum_probs=242.4

Q ss_pred             CeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCC---eeEEEEEecCCCeEEEeeeccceeEEEEcCCCC
Q 001295          503 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGR---WCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN  579 (1106)
Q Consensus       503 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~  579 (1106)
                      .+.+++|++  +|+++++ +.||.|++||+.+++....+..+..   .+.+++|+|||+                     
T Consensus        18 ~~~~~~~sp--dg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~---------------------   73 (723)
T 1xfd_A           18 HDPEAKWIS--DTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDRE---------------------   73 (723)
T ss_dssp             CCCCCCBSS--SSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSS---------------------
T ss_pred             cccccEEcC--CCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCC---------------------
Confidence            356677765  4566665 7899999999998877666554433   255555555555                     


Q ss_pred             EEEEEECC---------CeEEEEECCCcceeEEEcc-CCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhh
Q 001295          580 RFLAAGDD---------FSIKFWDMDSVQLLTSIDA-DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF  649 (1106)
Q Consensus       580 ~l~~~~~d---------~~i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  649 (1106)
                      +|++++.+         +.|++||+.+++. ..+.. ..+...+..++|||||++|+.++. +.|++||+.++ +..+..
T Consensus        74 ~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g-~~~~~~  150 (723)
T 1xfd_A           74 YALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGK-QAIRVV  150 (723)
T ss_dssp             EEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSS-CCEEEE
T ss_pred             EEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCC-ceEEEe
Confidence            67777653         7899999999876 33332 222334889999999999999987 79999998876 222211


Q ss_pred             cccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCC
Q 001295          650 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP  729 (1106)
Q Consensus       650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~  729 (1106)
                      ..+...+                                                    +..|..     -|-..     
T Consensus       151 ~~~~~~~----------------------------------------------------~~~g~~-----~~v~~-----  168 (723)
T 1xfd_A          151 STGKEGV----------------------------------------------------IYNGLS-----DWLYE-----  168 (723)
T ss_dssp             CCCBTTT----------------------------------------------------EEEEEC-----CHHHH-----
T ss_pred             cCCCCCc----------------------------------------------------eECccc-----ceeEE-----
Confidence            1100000                                                    000000     00000     


Q ss_pred             ccceecccCccccccceEEEEEcCCCceEEEeecC-ceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCC
Q 001295          730 NQCRSLRLPENLRATKISRLIFTNSGNAILALASN-AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSN  808 (1106)
Q Consensus       730 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  808 (1106)
                                ..-...+.+++|+|||+.|++++.+ +.+.+|++...                    .+          .
T Consensus       169 ----------ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~--------------------~~----------~  208 (723)
T 1xfd_A          169 ----------EEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTY--------------------TG----------S  208 (723)
T ss_dssp             ----------HTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCC--------------------SS----------S
T ss_pred             ----------EEeccCcceEEECCCCCEEEEEEECCCccceEEeecc--------------------CC----------c
Confidence                      0011345789999999999988865 45666654310                    00          0


Q ss_pred             CCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeecCC------CCCeeEEEEecCCCceEEEeeC----CCcEEE
Q 001295          809 PEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPP------PPAATFLAFHPQDNNIIAIGMD----DSSIQI  878 (1106)
Q Consensus       809 ~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~------~~~v~~l~~s~~d~~~la~g~~----dg~v~i  878 (1106)
                      +...+..+.|.++|..   ..+..|++||+.+++....+..+      ...+..++||| |+++|++...    +..|++
T Consensus       209 ~~~~~~~~~~~~~G~~---~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~  284 (723)
T 1xfd_A          209 IYPTVKPYHYPKAGSE---NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTL  284 (723)
T ss_dssp             SSCCCEEEECCBTTSC---CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEE
T ss_pred             CCCcceeccCCCCCCC---CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEE
Confidence            2234678888888763   12468999999998866666554      56789999999 8888877653    358999


Q ss_pred             EEeecceEEEEecCc-ccCee----EEEEecCCCEEEE--EcCCC------cEEEEe-CCCcccccceeecccCCCCCCC
Q 001295          879 YNVRVDEVKSKLKGH-SKRIT----GLAFSHALNVLVS--SGADS------QLCVWS-SDGWEKQKNRFLQIPTGRTPTA  944 (1106)
Q Consensus       879 wd~~~~~~~~~l~~h-~~~V~----~l~~s~d~~~l~s--~s~Dg------~i~vwd-~~~~~~~~~~~~~~~~~~~~~~  944 (1106)
                      ||+.++++...+..+ ...+.    .++|+|||+.|+.  +..|+      .|.+|| ..+++...  ......++    
T Consensus       285 ~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~--~~~l~~~~----  358 (723)
T 1xfd_A          285 CDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDN--IQSITSGD----  358 (723)
T ss_dssp             EETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCC--CCBSCCSS----
T ss_pred             EeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccc--eeEeecCC----
Confidence            999998877666543 34343    8899999997775  45666      466677 33332000  11111121    


Q ss_pred             CCCce-EEEcCCCcEEEE-EeC---CeEEEEecCCce--EeeecccC-CCCCCeeEEEECCCCCEEEEEEcC-C--eEEE
Q 001295          945 QSDTR-VQFHQDQIHFLV-VHE---TQLAIFETTKLE--CVKQWVPR-ESSAPITHATFSCDSQLVYACFLD-A--TVCV 1013 (1106)
Q Consensus       945 ~~i~~-~~~s~dg~~l~~-~~d---~~v~i~d~~~~~--~~~~~~~~-~h~~~v~~l~~s~d~~~l~t~s~D-g--~i~v 1013 (1106)
                      ..+.. ++|+|||+.|+. +.+   +.+++|++....  ....+... .|...+..++|||||++|+..... .  ...+
T Consensus       359 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~  438 (723)
T 1xfd_A          359 WDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTV  438 (723)
T ss_dssp             SCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEE
T ss_pred             eEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEE
Confidence            12333 689999999987 444   779999986432  23333210 156778999999999998865432 2  2445


Q ss_pred             EEcCCceeEEee
Q 001295         1014 FSAANLKLRCRI 1025 (1106)
Q Consensus      1014 wd~~~~~~~~~~ 1025 (1106)
                      ++..++..+..+
T Consensus       439 ~~~~~~~~~~~~  450 (723)
T 1xfd_A          439 HNTTDKKKMFDL  450 (723)
T ss_dssp             EETTTCCEEEEE
T ss_pred             EECCCCCEEEEe
Confidence            566666554433

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.88  E-value=9.3e-21  Score=211.06  Aligned_cols=248  Identities=12%  Similarity=0.155  Sum_probs=175.5

Q ss_pred             CCCCeeEEEEecCCCEEEEEe-C-CeEEEEEcC--CCc--eeeeecCCCCCeeEEEEecCCCceEEEee-CCCcEEEEEe
Q 001295          809 PEEAVPCFALSKNDSYVMSAS-G-GKISLFNMM--TFK--TMATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNV  881 (1106)
Q Consensus       809 ~~~~v~~l~~s~~~~~l~~~s-d-g~i~vwd~~--~~~--~~~~~~~~~~~v~~l~~s~~d~~~la~g~-~dg~v~iwd~  881 (1106)
                      +...+.+++|+|++++|++++ + +.|.+|++.  +++  .+..+..+. .+..++|+| ++++|++++ .++.|++||+
T Consensus        36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~  113 (343)
T 1ri6_A           36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDH-QGQFVFVGSYNAGNVSVTRL  113 (343)
T ss_dssp             CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcC-CCCEEEEEecCCCeEEEEEC
Confidence            566788899999999988887 4 899999997  554  334454444 789999999 787666555 5889999999


Q ss_pred             ---ecceEEEEecCcccCeeEEEEecCCCEEEEEc-CCCcEEEEeCCC-cccccce--eecccCCCCCCCCCCceEEEcC
Q 001295          882 ---RVDEVKSKLKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDG-WEKQKNR--FLQIPTGRTPTAQSDTRVQFHQ  954 (1106)
Q Consensus       882 ---~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s-~Dg~i~vwd~~~-~~~~~~~--~~~~~~~~~~~~~~i~~~~~s~  954 (1106)
                         .+++.+..+..+. .+.+++|+|||++|++++ .|+.|.+||+.+ ++.....  ......+     ..+..++|+|
T Consensus       114 ~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~p  187 (343)
T 1ri6_A          114 EDGLPVGVVDVVEGLD-GCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEG-----AGPRHMVFHP  187 (343)
T ss_dssp             ETTEEEEEEEEECCCT-TBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTT-----CCEEEEEECT
T ss_pred             CCCccccccccccCCC-CceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCC-----CCcceEEECC
Confidence               5555666666544 589999999999888777 899999999987 4332111  1222222     2567899999


Q ss_pred             CCcEEEE-E-eCCeEEEEecCC--ceE--eeecc--cCCC--CCCeeEEEECCCCCEEEEEE-cCCeEEEEEcC--C--c
Q 001295          955 DQIHFLV-V-HETQLAIFETTK--LEC--VKQWV--PRES--SAPITHATFSCDSQLVYACF-LDATVCVFSAA--N--L 1019 (1106)
Q Consensus       955 dg~~l~~-~-~d~~v~i~d~~~--~~~--~~~~~--~~~h--~~~v~~l~~s~d~~~l~t~s-~Dg~i~vwd~~--~--~ 1019 (1106)
                      +|+++++ + .++.|.+|++..  ++.  .....  ..++  ...+.+++|+|||++|+++. .|+.|++||+.  +  .
T Consensus       188 dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~  267 (343)
T 1ri6_A          188 NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVL  267 (343)
T ss_dssp             TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCE
T ss_pred             CCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCce
Confidence            9998766 4 678999999953  332  22211  1111  34677899999999887544 78999999998  3  3


Q ss_pred             eeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEe-CCCcEEEEeecCCCCcc
Q 001295         1020 KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL-SDGGVHVFEPLESEGKW 1076 (1106)
Q Consensus      1020 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~-~Dg~v~vW~~~~~~~~~ 1076 (1106)
                      +.+..+.      .+  ..   +..++|+| |+++|++++ .|+.|.+|++....+.+
T Consensus       268 ~~~~~~~------~~--~~---~~~~~~s~-dg~~l~~~~~~~~~v~v~~~d~~~g~~  313 (343)
T 1ri6_A          268 SKEGFQP------TE--TQ---PRGFNVDH-SGKYLIAAGQKSHHISVYEIVGEQGLL  313 (343)
T ss_dssp             EEEEEEE------CS--SS---CCCEEECT-TSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             EEeeeec------CC--Cc---cceEEECC-CCCEEEEecCCCCeEEEEEEcCCCcee
Confidence            3443333      11  11   33699999 688877777 68999999876544333

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.88  E-value=4.5e-20  Score=204.33  Aligned_cols=240  Identities=13%  Similarity=0.096  Sum_probs=172.5

Q ss_pred             EEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeC-CC
Q 001295          356 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS-RH  434 (1106)
Q Consensus       356 ~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~-d~  434 (1106)
                      ..|.+++.+++++++.++.|.+||..+++....                   +..+...+ +++|+|||++|++++. ++
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~   62 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ-------------------ITLGYDFV-DTAITSDCSNVVVTSDFCQ   62 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE-------------------EECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccceeee-------------------EEccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence            457788888899999999999999999887653                   23334556 9999999997777665 88


Q ss_pred             eEEEEEccCCce-eeeeeeeccccCCeeEEEEcCCCCceEEEEecCC-C--cEEEEeCCCCceeEEEeccCCCeEEEecc
Q 001295          435 IVQIYSYHGGDE-VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD-K--TIKVWDATNGAKQYIFEGHEAPVYSVCPH  510 (1106)
Q Consensus       435 ~v~iwd~~~~~~-~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d-~--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~  510 (1106)
                      .|.+||+.+++. ..   .+..+..++.+++|+|+|+  +++++..+ +  .|.+||+.+++.+..+..+ ....+++|+
T Consensus        63 ~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s  136 (331)
T 3u4y_A           63 TLVQIETQLEPPKVV---AIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAIS  136 (331)
T ss_dssp             EEEEEECSSSSCEEE---EEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEEC
T ss_pred             eEEEEECCCCceeEE---ecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEEC
Confidence            999999999876 33   4555666666699999999  56655554 3  8999999999988887754 456888886


Q ss_pred             ccCCceEEEEEecCCe-EEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEE-CCC
Q 001295          511 HKENIQFIFSTALDGK-IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDF  588 (1106)
Q Consensus       511 ~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~  588 (1106)
                      ++.. .++++...++. |.+|++..........        ....+.+         .....+.|+|+++++++++ .++
T Consensus       137 pdg~-~l~~~~~~~~~~i~~~~~~~~g~~~~~~--------~~~~~~~---------~~~~~~~~spdg~~l~v~~~~~~  198 (331)
T 3u4y_A          137 PNGN-GLILIDRSSANTVRRFKIDADGVLFDTG--------QEFISGG---------TRPFNITFTPDGNFAFVANLIGN  198 (331)
T ss_dssp             TTSS-CEEEEEETTTTEEEEEEECTTCCEEEEE--------EEEECSS---------SSEEEEEECTTSSEEEEEETTTT
T ss_pred             CCCC-EEEEEecCCCceEEEEEECCCCcEeecC--------CccccCC---------CCccceEECCCCCEEEEEeCCCC
Confidence            6542 24555566688 9999998654432211        0000111         1345566777777665554 689


Q ss_pred             eEEEEECCCcce---eEEEccCCCCCCcCeEEEccCCCEEEEEe-CCCcEEEEEccCC
Q 001295          589 SIKFWDMDSVQL---LTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDG  642 (1106)
Q Consensus       589 ~i~iwd~~~~~~---~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~  642 (1106)
                      .|++||+.+++.   +..+...   ..+..++|+|||++++++. .++.|.+||..++
T Consensus       199 ~v~v~d~~~~~~~~~~~~~~~~---~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~  253 (331)
T 3u4y_A          199 SIGILETQNPENITLLNAVGTN---NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSG  253 (331)
T ss_dssp             EEEEEECSSTTSCEEEEEEECS---SCCCCEEECTTSSEEEEECSSEEEEEEEETTTT
T ss_pred             eEEEEECCCCcccceeeeccCC---CCCceEEECCCCCEEEEEEcCCCEEEEEECCCC
Confidence            999999999988   7777644   3478899999999777665 4778999998876

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.87  E-value=3.2e-20  Score=205.55  Aligned_cols=285  Identities=13%  Similarity=0.062  Sum_probs=197.2

Q ss_pred             EEcCCCce-EEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEE
Q 001295          750 IFTNSGNA-ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA  828 (1106)
Q Consensus       750 ~~s~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~  828 (1106)
                      .|.++++. +++...++.|.+||..                      +++...... .  +...+ .++|+|++++++++
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~----------------------~~~~~~~~~-~--~~~~~-~~~~s~dg~~l~~~   57 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTD----------------------TLEILNQIT-L--GYDFV-DTAITSDCSNVVVT   57 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETT----------------------TCCEEEEEE-C--CCCEE-EEEECSSSCEEEEE
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCc----------------------ccceeeeEE-c--cCCcc-eEEEcCCCCEEEEE
Confidence            45555555 5566668999998865                      333322211 1  34455 99999999977766


Q ss_pred             e--CCeEEEEEcCCCce-eeeecCCCCCeeEEEEecCCCceEEEeeCCC---cEEEEEeecceEEEEecCcccCeeEEEE
Q 001295          829 S--GGKISLFNMMTFKT-MATFMPPPPAATFLAFHPQDNNIIAIGMDDS---SIQIYNVRVDEVKSKLKGHSKRITGLAF  902 (1106)
Q Consensus       829 s--dg~i~vwd~~~~~~-~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg---~v~iwd~~~~~~~~~l~~h~~~V~~l~~  902 (1106)
                      +  ++.|.+||..+++. ...+..+.....+++|+| ++++|+++..++   .|++||+.+++.+..+..+. ...+++|
T Consensus        58 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~  135 (331)
T 3u4y_A           58 SDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-DAVGIAI  135 (331)
T ss_dssp             ESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT-TEEEEEE
T ss_pred             eCCCCeEEEEECCCCceeEEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC-CccceEE
Confidence            5  68999999999887 667766666555599999 888888666553   89999999999888876544 4689999


Q ss_pred             ecCCCEEEE-EcCCCc-EEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-E-eCCeEEEEecCCceE-
Q 001295          903 SHALNVLVS-SGADSQ-LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V-HETQLAIFETTKLEC-  977 (1106)
Q Consensus       903 s~d~~~l~s-~s~Dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~-~d~~v~i~d~~~~~~-  977 (1106)
                      +|||++|++ ...++. |.+|++................    ...+..++|+|||+++++ + .++.|.+||+.+++. 
T Consensus       136 spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~  211 (331)
T 3u4y_A          136 SPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISG----GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI  211 (331)
T ss_dssp             CTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECS----SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSC
T ss_pred             CCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccC----CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccc
Confidence            999985554 455688 9999988643211110111111    124689999999997766 4 578999999999887 


Q ss_pred             --eeecccCCCCCCeeEEEECCCCCEEEEEE-cCCeEEEEEcCCcee--EEeeCCCcccCCCCCCCCccceEEEEeCCCC
Q 001295          978 --VKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKL--RCRINPSAYLPAGVSSSNVHPLVIAAHPQEP 1052 (1106)
Q Consensus       978 --~~~~~~~~h~~~v~~l~~s~d~~~l~t~s-~Dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~ 1052 (1106)
                        +..+..   ...+..++|+|||++|++++ .++.|.+||+.+++.  +..+.......... ....  -.++|+| |+
T Consensus       212 ~~~~~~~~---~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~sp-dg  284 (331)
T 3u4y_A          212 TLLNAVGT---NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRP-LFGA--NQMALNK-TE  284 (331)
T ss_dssp             EEEEEEEC---SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGG-GTTC--CCEEECT-TS
T ss_pred             ceeeeccC---CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCC-cccc--cceEECC-CC
Confidence              666652   46778999999999876665 478899999999987  33332110000000 0001  2589999 67


Q ss_pred             CEEEE-EeCCCcEEEEeecCCC
Q 001295         1053 NEFAL-GLSDGGVHVFEPLESE 1073 (1106)
Q Consensus      1053 ~~l~t-~~~Dg~v~vW~~~~~~ 1073 (1106)
                      ++|++ +..++.|.+|++.+..
T Consensus       285 ~~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          285 TKLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             SEEEEEETTTTEEEEEETTSCE
T ss_pred             CEEEEecCCCCcEEEEEecCCc
Confidence            77654 5556799999998766

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.87  E-value=1.3e-19  Score=202.72  Aligned_cols=273  Identities=11%  Similarity=0.109  Sum_probs=205.6

Q ss_pred             ccceEEEEEcCCCceEEEeec-------CceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeE
Q 001295          743 ATKISRLIFTNSGNAILALAS-------NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC  815 (1106)
Q Consensus       743 ~~~i~~~~~s~~~~~l~~~~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~  815 (1106)
                      ...+..++|+|+++.+++++.       ++.|.+||..                      +++......    ....+..
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~----------------------~~~~~~~~~----~~~~~~~   93 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPV----------------------TLEVTQAIH----NDLKPFG   93 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTT----------------------TCCEEEEEE----ESSCCCS
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCC----------------------CCeEEEEEe----cCCCcce
Confidence            456789999999998887774       4578777654                      333222111    2334678


Q ss_pred             EEEecCCCEEEEEe--CCeEEEEEcCCCceeeeecCCCCC---------eeEEEEecCCCceEEEee--CCCcEEEEEee
Q 001295          816 FALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPA---------ATFLAFHPQDNNIIAIGM--DDSSIQIYNVR  882 (1106)
Q Consensus       816 l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~---------v~~l~~s~~d~~~la~g~--~dg~v~iwd~~  882 (1106)
                      ++++|++++++++.  ++.|.+||..+++.+..+..+...         +.+++|+| +++++++++  .++.|++||..
T Consensus        94 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~  172 (353)
T 3vgz_A           94 ATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGG  172 (353)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETT
T ss_pred             EEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCC
Confidence            99999999776665  689999999999988877654322         68899999 777666655  47899999999


Q ss_pred             cceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE
Q 001295          883 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV  962 (1106)
Q Consensus       883 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~  962 (1106)
                      +++.+..+..+...+.+++|+|||++|++++.++.|.+||+.+++.....  ..  +.......+..++|+|+|++++++
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~--~~--~~~~~~~~~~~~~~s~dg~~l~~~  248 (353)
T 3vgz_A          173 NIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRK--KL--LDDGKEHFFINISLDTARQRAFIT  248 (353)
T ss_dssp             TTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEE--EC--CCSSSCCCEEEEEEETTTTEEEEE
T ss_pred             CCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEE--Ec--CCCCCCcccceEEECCCCCEEEEE
Confidence            99999888867777899999999999999999999999999987643221  11  111111245679999999988774


Q ss_pred             --eCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEE-cCCeEEEEEcCCceeEEeeCCCcccCCCCCCCC
Q 001295          963 --HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSSN 1039 (1106)
Q Consensus       963 --~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s-~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1106)
                        .++.|.+||..+++.+..+....    ...++|+|||++|++++ .++.|.+||..+++.+..+..    +       
T Consensus       249 ~~~~~~v~~~d~~~~~~~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~----~-------  313 (353)
T 3vgz_A          249 DSKAAEVLVVDTRNGNILAKVAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT----P-------  313 (353)
T ss_dssp             ESSSSEEEEEETTTCCEEEEEECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC----C-------
T ss_pred             eCCCCEEEEEECCCCcEEEEEEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec----C-------
Confidence              45899999999999888776422    25799999999766665 689999999999998887751    1       


Q ss_pred             ccceEEEEeCCCCCEEEEEeCCC
Q 001295         1040 VHPLVIAAHPQEPNEFALGLSDG 1062 (1106)
Q Consensus      1040 v~~~~~~~~~~d~~~l~t~~~Dg 1062 (1106)
                      ..+..++|+| |+++|+++..++
T Consensus       314 ~~~~~~~~s~-dg~~l~v~~~~~  335 (353)
T 3vgz_A          314 THPNSLALSA-DGKTLYVSVKQK  335 (353)
T ss_dssp             SEEEEEEECT-TSCEEEEEEECC
T ss_pred             CCCCeEEEcC-CCCEEEEEEccc
Confidence            1344899999 688776666553

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.87  E-value=2.3e-20  Score=207.33  Aligned_cols=267  Identities=12%  Similarity=0.063  Sum_probs=199.3

Q ss_pred             ceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCC-CeeEEEEecCCCEEEEEe--CCe
Q 001295          756 NAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE-AVPCFALSKNDSYVMSAS--GGK  832 (1106)
Q Consensus       756 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~v~~l~~s~~~~~l~~~s--dg~  832 (1106)
                      +++++++.++.|.+||+.+                      +........+  +.. .+..++|+|++++++++.  ++.
T Consensus         2 ~~~v~~~~~~~v~~~d~~~----------------------~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~v~~~~~~~   57 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEK----------------------MAVDKVITIA--DAGPTPMVPMVAPGGRIAYATVNKSES   57 (337)
T ss_dssp             EEEEEEETTTEEEEEETTT----------------------TEEEEEEECT--TCTTCCCCEEECTTSSEEEEEETTTTE
T ss_pred             cEEEEcCCCCeEEEEECCC----------------------CcEEEEEEcC--CCCCCccceEEcCCCCEEEEEeCCCCe
Confidence            3578888899999998753                      2222111100  111 477899999998776554  689


Q ss_pred             EEEEEcCCCceeeeecCCC-----CCeeEEEEecCCCceEEEee------------CCCcEEEEEeecceEEEEecCccc
Q 001295          833 ISLFNMMTFKTMATFMPPP-----PAATFLAFHPQDNNIIAIGM------------DDSSIQIYNVRVDEVKSKLKGHSK  895 (1106)
Q Consensus       833 i~vwd~~~~~~~~~~~~~~-----~~v~~l~~s~~d~~~la~g~------------~dg~v~iwd~~~~~~~~~l~~h~~  895 (1106)
                      |.+||+.+++.+..+....     ..+..++|+| ++++|+++.            .++.|++||+.+++.+..+.. ..
T Consensus        58 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~  135 (337)
T 1pby_B           58 LVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PR  135 (337)
T ss_dssp             EEEEETTTCCEEEEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CS
T ss_pred             EEEEECCCCCeEeeEEcCCcccccccccceEECC-CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CC
Confidence            9999999998877665321     2577899999 888888876            579999999999988877765 45


Q ss_pred             CeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEe--CC--------
Q 001295          896 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH--ET--------  965 (1106)
Q Consensus       896 ~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~--d~--------  965 (1106)
                      .+.+++|+|||++|+++  ++.|.+||+.+++...  .+.  .+.     ....+.|+|||++++++.  ++        
T Consensus       136 ~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~--~~~--~~~-----~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~  204 (337)
T 1pby_B          136 QITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVE--DKP--IQS-----WEAETYAQPDVLAVWNQHESSGVMATPFYT  204 (337)
T ss_dssp             SCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEE--EEC--STT-----TTTTTBCCCBCCCCCCCCTTTTEEEEEEEE
T ss_pred             CcceeEECCCCCEEEEe--CCeEEEEECCCCcEee--eee--ccc-----cCCCceeCCCccEEeeeccCCCceeeeeec
Confidence            68899999999988888  6889999999865422  111  111     012337899998776532  22        


Q ss_pred             ---------------eEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcc
Q 001295          966 ---------------QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAY 1030 (1106)
Q Consensus       966 ---------------~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~ 1030 (1106)
                                     .|.+||+.+++.. .+....+...+.+++|+|||++|+++  ++.|++||+.+++.+..+..   
T Consensus       205 ~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~---  278 (337)
T 1pby_B          205 ARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL---  278 (337)
T ss_dssp             EBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC---
T ss_pred             cccccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC---
Confidence                           5789999998876 44444566788999999999999988  79999999999998877651   


Q ss_pred             cCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCCC
Q 001295         1031 LPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEG 1074 (1106)
Q Consensus      1031 ~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~~ 1074 (1106)
                       +..     +.  .++|+| |+++|++++.|+.|.+||+.+++.
T Consensus       279 -~~~-----~~--~~~~s~-dg~~l~~~~~~~~i~v~d~~~~~~  313 (337)
T 1pby_B          279 -PHS-----YY--SVNVST-DGSTVWLGGALGDLAAYDAETLEK  313 (337)
T ss_dssp             -SSC-----CC--EEEECT-TSCEEEEESBSSEEEEEETTTCCE
T ss_pred             -CCc-----ee--eEEECC-CCCEEEEEcCCCcEEEEECcCCcE
Confidence             111     33  799999 688888889999999999999883

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.86  E-value=4.6e-20  Score=204.88  Aligned_cols=181  Identities=12%  Similarity=0.074  Sum_probs=141.8

Q ss_pred             CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEE
Q 001295          830 GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVL  909 (1106)
Q Consensus       830 dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l  909 (1106)
                      ++.|.+||+.+++.+..+.. ...+.+++|+| ++++|+++  ++.|++||+.+++.+..+..+... ..+.|+||++.|
T Consensus       114 ~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l  188 (337)
T 1pby_B          114 PTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAV  188 (337)
T ss_dssp             CCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEE--SSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCC
T ss_pred             CceEEEEECCCCcEEEEEeC-CCCcceeEECC-CCCEEEEe--CCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEE
Confidence            58999999999888777764 45688899999 88878777  689999999999988777655411 134789999877


Q ss_pred             EEEcCCC------------------------cEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCC
Q 001295          910 VSSGADS------------------------QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET  965 (1106)
Q Consensus       910 ~s~s~Dg------------------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~  965 (1106)
                      +..+.++                        .|.+||+.+++.. .  +... .+.   ..+..++|+|||++++++ ++
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~--~~~~-~~~---~~~~~~~~s~dg~~l~~~-~~  260 (337)
T 1pby_B          189 WNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-M--REVR-IMD---VFYFSTAVNPAKTRAFGA-YN  260 (337)
T ss_dssp             CCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-E--EEEE-ECS---SCEEEEEECTTSSEEEEE-ES
T ss_pred             eeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-E--eecC-CCC---CceeeEEECCCCCEEEEe-CC
Confidence            6554332                        4689999887643 1  1111 111   245789999999999888 79


Q ss_pred             eEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295          966 QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus       966 ~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
                      .|.+||+.+++.+..+..   ...+.+++|+|||++|++++.|+.|++||+.+++.+..+.
T Consensus       261 ~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~  318 (337)
T 1pby_B          261 VLESFDLEKNASIKRVPL---PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             EEEEEETTTTEEEEEEEC---SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred             eEEEEECCCCcCcceecC---CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEE
Confidence            999999999988877653   3467899999999999999999999999999999988876

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.86  E-value=1.7e-19  Score=201.76  Aligned_cols=246  Identities=11%  Similarity=0.077  Sum_probs=181.4

Q ss_pred             ccCCCCcEEEEEecCCCeEEEEEec------cCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEE
Q 001295          347 LNQGSSPMSMDFHPVQQTLLLVGTN------VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW  420 (1106)
Q Consensus       347 ~~h~~~v~~~~~sp~g~~llatg~~------dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~  420 (1106)
                      ......+..++|+|+|++++++...      ++.|.+||..+++.+....                    ....+..++|
T Consensus        37 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--------------------~~~~~~~~~~   96 (353)
T 3vgz_A           37 KAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--------------------NDLKPFGATI   96 (353)
T ss_dssp             EEEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--------------------ESSCCCSEEE
T ss_pred             hhhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--------------------cCCCcceEEE
Confidence            3456788999999999975554433      6789999999988765411                    1234678999


Q ss_pred             ccCCCEEEEE-eCCCeEEEEEccCCceeeeeeeeccccC---------CeeEEEEcCCCCceEEEEecCCCcEEEEeCCC
Q 001295          421 SPDGSLFGVA-YSRHIVQIYSYHGGDEVRQHLEIDAHVG---------GVNDIAFSHPNKQLCVITCGDDKTIKVWDATN  490 (1106)
Q Consensus       421 spdg~~las~-~~d~~v~iwd~~~~~~~~~~~~l~~h~~---------~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~  490 (1106)
                      +|||++++++ ..++.|.+||..+++.+..   +..+..         .+.+++|+|+++.+++...+.++.|.+||..+
T Consensus        97 s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~  173 (353)
T 3vgz_A           97 NNTTQTLWFGNTVNSAVTAIDAKTGEVKGR---LVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGN  173 (353)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTTCCEEEE---EESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTT
T ss_pred             CCCCCEEEEEecCCCEEEEEeCCCCeeEEE---EecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCC
Confidence            9999966555 5579999999999887653   333222         27889999999953222224689999999999


Q ss_pred             CceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeC----CCCeeEEEEEecCCCeEEEeeec
Q 001295          491 GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA----PGRWCTTMAYSADGTRTYQGFRK  566 (1106)
Q Consensus       491 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~s~~~~~~~~~~~~  566 (1106)
                      ++.+..+..+...+.+++|++  +++++++++.++.|.+||..+.+....+..    +...+..+               
T Consensus       174 ~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~---------------  236 (353)
T 3vgz_A          174 IKLKTAIQNTGKMSTGLALDS--EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINI---------------  236 (353)
T ss_dssp             TEEEEEECCCCTTCCCCEEET--TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEE---------------
T ss_pred             CceEEEecCCCCccceEEECC--CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceE---------------
Confidence            999998886666678888755  457888999999999999988766554443    22233444               


Q ss_pred             cceeEEEEcCCCCEEEEEE-CCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEe-CCCcEEEEEccCC
Q 001295          567 RSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDG  642 (1106)
Q Consensus       567 ~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~  642 (1106)
                            +++|+++++++++ .++.|.+||..+++.+..+....    ...++|+|+|++++++. .++.|.+||..++
T Consensus       237 ------~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~  304 (353)
T 3vgz_A          237 ------SLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSY  304 (353)
T ss_dssp             ------EEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred             ------EECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence                  4555555666655 45999999999999888887532    35799999999766665 6899999998776

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.86  E-value=2.1e-19  Score=200.33  Aligned_cols=246  Identities=12%  Similarity=0.146  Sum_probs=168.0

Q ss_pred             CCCCeeEEEEecCCCEEEEEe---CCeEEEEEcCCCc--eeeeecCCCCCeeEEEEecCCCceEEEee-CCCcEEEEEee
Q 001295          809 PEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFK--TMATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVR  882 (1106)
Q Consensus       809 ~~~~v~~l~~s~~~~~l~~~s---dg~i~vwd~~~~~--~~~~~~~~~~~v~~l~~s~~d~~~la~g~-~dg~v~iwd~~  882 (1106)
                      +...+..++|+|||++++++.   ++.|.+|++.+++  .+..+..+...+..++|+| ++++|++++ .++.|.+|++.
T Consensus        38 ~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~  116 (347)
T 3hfq_A           38 ATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIA  116 (347)
T ss_dssp             ECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEEC
T ss_pred             ccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeC
Confidence            345677899999999444443   3789999997665  3444445677889999999 888887777 78999999996


Q ss_pred             c-c--eEEEEecC---------cccCeeEEEEecCCCEEEEEcCCCcEEEEeCC-CcccccceeecccCCCCCCCCCCce
Q 001295          883 V-D--EVKSKLKG---------HSKRITGLAFSHALNVLVSSGADSQLCVWSSD-GWEKQKNRFLQIPTGRTPTAQSDTR  949 (1106)
Q Consensus       883 ~-~--~~~~~l~~---------h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~i~~  949 (1106)
                      . +  +.+..+..         +...+.+++|+|||+++++...++.|.+|++. +++...........+     ..+..
T Consensus       117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g-----~~p~~  191 (347)
T 3hfq_A          117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG-----FGPRH  191 (347)
T ss_dssp             TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTT-----CCEEE
T ss_pred             CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC-----CCCce
Confidence            3 2  33333322         12348899999999977777788999999998 433221111122222     24578


Q ss_pred             EEEcCCCcEEEEE--eCCeEEEEecCC--ceEe--eecccCCC----CCCeeEEEECCCCCEEE-EEEcCCeEEEEEcCC
Q 001295          950 VQFHQDQIHFLVV--HETQLAIFETTK--LECV--KQWVPRES----SAPITHATFSCDSQLVY-ACFLDATVCVFSAAN 1018 (1106)
Q Consensus       950 ~~~s~dg~~l~~~--~d~~v~i~d~~~--~~~~--~~~~~~~h----~~~v~~l~~s~d~~~l~-t~s~Dg~i~vwd~~~ 1018 (1106)
                      ++|+|||++++++  .++.|.+|++..  ++..  ..+.....    ...+..++|+|||++|+ +...++.|.+|++..
T Consensus       192 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~  271 (347)
T 3hfq_A          192 LVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA  271 (347)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence            9999999977773  568999999874  4432  22221110    14588999999999874 555689999999973


Q ss_pred             -c--eeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeC-CCcEEEEeecC
Q 001295         1019 -L--KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS-DGGVHVFEPLE 1071 (1106)
Q Consensus      1019 -~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~-Dg~v~vW~~~~ 1071 (1106)
                       +  +.+..+..     .+     ..+..++|+| |+++|++++. ++.|.+|++..
T Consensus       272 ~g~~~~~~~~~~-----~~-----~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~d~  317 (347)
T 3hfq_A          272 DGHLTLIQQIST-----EG-----DFPRDFDLDP-TEAFVVVVNQNTDNATLYARDL  317 (347)
T ss_dssp             GGCEEEEEEEEC-----SS-----SCCCEEEECT-TSSEEEEEETTTTEEEEEEECT
T ss_pred             CCcEEEeEEEec-----CC-----CCcCeEEECC-CCCEEEEEEcCCCcEEEEEEeC
Confidence             2  33433331     01     2234899999 6888777765 48999996654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.85  E-value=1e-18  Score=199.14  Aligned_cols=315  Identities=14%  Similarity=0.151  Sum_probs=201.0

Q ss_pred             ccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCC
Q 001295          743 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND  822 (1106)
Q Consensus       743 ~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~  822 (1106)
                      ...+..+++++++..+++++.++ +++|+.........   .......+........       ..+...|.+++|+|++
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~-------~~~~~~v~~l~~spdg  104 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNK---PGDDPNKIVDKVQGLL-------VPMKFPIHHLALSCDN  104 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCC---TTCCTTCEEECCCCEE-------ECCSSCEEEEEECTTS
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcc---cccCcccccccCcccc-------ccCCCcccEEEEcCCC
Confidence            34578899999999999988887 88887643111000   0000000000000000       1256789999999999


Q ss_pred             CEEE----EEe-CCeEEEEEcCCC--------ce---eeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceE
Q 001295          823 SYVM----SAS-GGKISLFNMMTF--------KT---MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV  886 (1106)
Q Consensus       823 ~~l~----~~s-dg~i~vwd~~~~--------~~---~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~  886 (1106)
                      ++|+    +++ |+.|+|||+.++        +.   +..+.+|...|.+++|+|+++.+||+++.||+|++||+.++..
T Consensus       105 ~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~  184 (434)
T 2oit_A          105 LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK  184 (434)
T ss_dssp             CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE
T ss_pred             CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc
Confidence            9999    666 799999998764        11   3556778999999999995489999999999999999999887


Q ss_pred             EEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCC-CCCCCCCCceEEEcCCCcEEEE--Ee
Q 001295          887 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTG-RTPTAQSDTRVQFHQDQIHFLV--VH  963 (1106)
Q Consensus       887 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~s~dg~~l~~--~~  963 (1106)
                      +....+|...|++++|+|+|++|++|+.||+|++||++ ++...  .+..... .......+.+++|++++.++++  ..
T Consensus       185 ~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~--~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~  261 (434)
T 2oit_A          185 VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKK--VIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAA  261 (434)
T ss_dssp             EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEE--EECCCTTCCTTSCEEEEEEEEEETTEEEEEEEET
T ss_pred             eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccccc--cccCCcccCCCCceeEEEEEEecCceEEEEEccC
Confidence            77778899999999999999999999999999999998 32211  1111111 0011136889999999999877  24


Q ss_pred             CC------eEEEEecCCceE-----eeeccc-----CCCCCCeeEEEECCCCCEEEEEEc-CCeEEEEEcCCc--ee-EE
Q 001295          964 ET------QLAIFETTKLEC-----VKQWVP-----RESSAPITHATFSCDSQLVYACFL-DATVCVFSAANL--KL-RC 1023 (1106)
Q Consensus       964 d~------~v~i~d~~~~~~-----~~~~~~-----~~h~~~v~~l~~s~d~~~l~t~s~-Dg~i~vwd~~~~--~~-~~ 1023 (1106)
                      +|      .+++|++.+.+.     ...+..     .+...+-..+.+-+|.+++++++. ...|.|......  .. ..
T Consensus       262 dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~  341 (434)
T 2oit_A          262 DGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESW  341 (434)
T ss_dssp             TCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEEE
T ss_pred             CCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEEE
Confidence            43      389999976521     111110     011222233444477777766654 344666654321  11 00


Q ss_pred             eeC--CCcccCCCCCCCCccceEEEEe--CCC------------CCEEEEEeCCCcEEEEeecC
Q 001295         1024 RIN--PSAYLPAGVSSSNVHPLVIAAH--PQE------------PNEFALGLSDGGVHVFEPLE 1071 (1106)
Q Consensus      1024 ~~~--~~~~~~~~~~~~~v~~~~~~~~--~~d------------~~~l~t~~~Dg~v~vW~~~~ 1071 (1106)
                      .+.  ....+|-........|+.+++.  ..+            --.|..-+.||.|..|.+-.
T Consensus       342 ~~~d~~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~  405 (434)
T 2oit_A          342 LLEDSSRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN  405 (434)
T ss_dssp             EECGGGCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred             eccccccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence            010  1112332222334556655553  211            13577888999999999866

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.84  E-value=6.9e-20  Score=199.08  Aligned_cols=233  Identities=13%  Similarity=0.035  Sum_probs=171.9

Q ss_pred             CCCCeeEEEEecCCCEEEEEeCCeEEEEEcCC-CceeeeecCC-CCCeeEEEEecCCCceEEEee--CCCcEEEEEee--
Q 001295          809 PEEAVPCFALSKNDSYVMSASGGKISLFNMMT-FKTMATFMPP-PPAATFLAFHPQDNNIIAIGM--DDSSIQIYNVR--  882 (1106)
Q Consensus       809 ~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~-~~~~~~~~~~-~~~v~~l~~s~~d~~~la~g~--~dg~v~iwd~~--  882 (1106)
                      |...+.+++|+|++++|++++++.|++||+.+ ++.......+ ...+.+++|+| ++++|++++  .++.+.||.+.  
T Consensus        40 ~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~l~~~~~~  118 (297)
T 2ojh_A           40 TPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP-DGALYAISDKVEFGKSAIYLLPST  118 (297)
T ss_dssp             ESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT-TSSEEEEEECTTTSSCEEEEEETT
T ss_pred             CCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECC-CCCEEEEEEeCCCCcceEEEEECC
Confidence            67789999999999999999999999999999 8877666655 36789999999 899999988  44566666554  


Q ss_pred             cceEEEEecCcccCeeEEEEecCCCEEE-EEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE
Q 001295          883 VDEVKSKLKGHSKRITGLAFSHALNVLV-SSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV  961 (1106)
Q Consensus       883 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~-s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~  961 (1106)
                      +++ ...+..+. .+..++|+||+++|+ +++.|+.++||+++.....   ... ...+.   ..+..++|+|+|++|++
T Consensus       119 ~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~---~~~-~~~~~---~~~~~~~~s~dg~~l~~  189 (297)
T 2ojh_A          119 GGT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV---ETR-LTHGE---GRNDGPDYSPDGRWIYF  189 (297)
T ss_dssp             CCC-CEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC---EEE-CCCSS---SCEEEEEECTTSSEEEE
T ss_pred             CCc-eEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCc---ceE-cccCC---CccccceECCCCCEEEE
Confidence            444 44454444 489999999999887 7888999999986532111   111 11221   36789999999998887


Q ss_pred             -E-eCCeEEEEecC-CceEeeecccCCCCCCeeEEEECCCCCEEEEEEcC-----------CeEEEEEcCCceeEEeeCC
Q 001295          962 -V-HETQLAIFETT-KLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----------ATVCVFSAANLKLRCRINP 1027 (1106)
Q Consensus       962 -~-~d~~v~i~d~~-~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~D-----------g~i~vwd~~~~~~~~~~~~ 1027 (1106)
                       + .++.+++|++. .+..+..+.  .|...+.+++|+|||++|++++.+           +.|++||+.+++...... 
T Consensus       190 ~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~-  266 (297)
T 2ojh_A          190 NSSRTGQMQIWRVRVDGSSVERIT--DSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFD-  266 (297)
T ss_dssp             EECTTSSCEEEEEETTSSCEEECC--CCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEE-
T ss_pred             EecCCCCccEEEECCCCCCcEEEe--cCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeec-
Confidence             4 47888999875 444555544  567789999999999999988876           569999999887644332 


Q ss_pred             CcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCC
Q 001295         1028 SAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG 1062 (1106)
Q Consensus      1028 ~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg 1062 (1106)
                         .. +| ...+.  .++|+| |++.|++++.|.
T Consensus       267 ---~~-~~-~~~~~--~~~~sp-dg~~l~~~~~~~  293 (297)
T 2ojh_A          267 ---LF-GG-QGTMN--SPNWSP-DGDEFAYVRYFP  293 (297)
T ss_dssp             ---EE-ES-TTTSC--SCCBCT-TSSEEEEEEECC
T ss_pred             ---cC-CC-Ccccc--cceECC-CCCEEEEEEecc
Confidence               11 11 12244  588999 688888777654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.84  E-value=7e-19  Score=196.06  Aligned_cols=278  Identities=14%  Similarity=0.145  Sum_probs=183.8

Q ss_pred             CCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeec---CceEEEeeccccccCCCCccccccCcc
Q 001295          714 SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS---NAIHLLWKWQRTERNSSGKATASVAPQ  790 (1106)
Q Consensus       714 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~  790 (1106)
                      .++.+.+|.++....  .+..+...  .+...+..++|+|+|+ +++++.   ++.|.+|++..+...            
T Consensus        14 ~~~~i~v~~~d~~tg--~~~~~~~~--~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~------------   76 (347)
T 3hfq_A           14 TSQGIYQGTLDTTAK--TLTNDGLL--AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAH------------   76 (347)
T ss_dssp             SCCEEEEEEEETTTT--EEEEEEEE--EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEE------------
T ss_pred             CCCCEEEEEEcCCCC--eEEEeeee--eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEE------------
Confidence            456788888875321  22221111  2446677899999999 665554   589999987532110            


Q ss_pred             ccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcC-CCc--eeeeecC---------CCCCeeE
Q 001295          791 LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMM-TFK--TMATFMP---------PPPAATF  856 (1106)
Q Consensus       791 ~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~-~~~--~~~~~~~---------~~~~v~~  856 (1106)
                              .+.. +.  .+...+..++|+|||++|++++  ++.|.+|++. ++.  .+..+..         +...+.+
T Consensus        77 --------~~~~-~~--~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~  145 (347)
T 3hfq_A           77 --------KLNT-VV--APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHY  145 (347)
T ss_dssp             --------EEEE-EE--EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEE
T ss_pred             --------Eeee-ee--cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceE
Confidence                    0100 00  1456678999999999888887  6899999996 332  2333321         1234889


Q ss_pred             EEEecCCCceEEEeeCCCcEEEEEee-cceEE--EEecCc-ccCeeEEEEecCCCEEEE-EcCCCcEEEEeCCC--cccc
Q 001295          857 LAFHPQDNNIIAIGMDDSSIQIYNVR-VDEVK--SKLKGH-SKRITGLAFSHALNVLVS-SGADSQLCVWSSDG--WEKQ  929 (1106)
Q Consensus       857 l~~s~~d~~~la~g~~dg~v~iwd~~-~~~~~--~~l~~h-~~~V~~l~~s~d~~~l~s-~s~Dg~i~vwd~~~--~~~~  929 (1106)
                      ++|+| +++++++...++.|++|++. ++++.  ..+..+ ...+..++|+|||++|++ ...++.|.+|+++.  ++..
T Consensus       146 ~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~  224 (347)
T 3hfq_A          146 TDLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFT  224 (347)
T ss_dssp             EEECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred             EEECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceE
Confidence            99999 77777777778999999998 55433  222222 336788999999996655 56788999999874  3321


Q ss_pred             cceeecccCCCCCCCCCCceEEEcCCCcEEEE-E-eCCeEEEEecCC---ceEeeecccCCCCCCeeEEEECCCCCEEEE
Q 001295          930 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V-HETQLAIFETTK---LECVKQWVPRESSAPITHATFSCDSQLVYA 1004 (1106)
Q Consensus       930 ~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~-~d~~v~i~d~~~---~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t 1004 (1106)
                      ....+............+..++|+|||++|++ . .++.|.+|++..   .+.+..+.  .+...+..++|+|||++|++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~--~~~~~~~~~~~spdg~~l~v  302 (347)
T 3hfq_A          225 QLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIS--TEGDFPRDFDLDPTEAFVVV  302 (347)
T ss_dssp             EEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEE--CSSSCCCEEEECTTSSEEEE
T ss_pred             EeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEe--cCCCCcCeEEECCCCCEEEE
Confidence            11122222111111134678999999998866 3 578999999973   24444443  44567899999999999888


Q ss_pred             EEcC-CeEEEE--EcCCceeE
Q 001295         1005 CFLD-ATVCVF--SAANLKLR 1022 (1106)
Q Consensus      1005 ~s~D-g~i~vw--d~~~~~~~ 1022 (1106)
                      ++.+ +.|.+|  |..+|++.
T Consensus       303 ~~~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          303 VNQNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             EETTTTEEEEEEECTTTCCEE
T ss_pred             EEcCCCcEEEEEEeCCCCeEE
Confidence            8765 899999  55667665

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.84  E-value=2.9e-19  Score=220.56  Aligned_cols=286  Identities=10%  Similarity=0.042  Sum_probs=190.2

Q ss_pred             ceEEEEEcCCCceEEEeec---------CceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeE
Q 001295          745 KISRLIFTNSGNAILALAS---------NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC  815 (1106)
Q Consensus       745 ~i~~~~~s~~~~~l~~~~~---------dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~  815 (1106)
                      .+.+++|||||++|+.++.         ++.+++||+.+                      +..+..  ..  ....+..
T Consensus        61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~----------------------g~~~~~--~~--l~~~~~~  114 (719)
T 1z68_A           61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN----------------------GEFVRG--NE--LPRPIQY  114 (719)
T ss_dssp             TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT----------------------TEECCS--SC--CCSSBCC
T ss_pred             ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC----------------------Cccccc--ee--cCccccc
Confidence            3678999999999998876         67888887653                      322100  00  1245788


Q ss_pred             EEEecCCCEEEEEeCCeEEEEEcCCCceeeee-cCCCCCe-----------------eEEEEecCCCceEEEeeCCC---
Q 001295          816 FALSKNDSYVMSASGGKISLFNMMTFKTMATF-MPPPPAA-----------------TFLAFHPQDNNIIAIGMDDS---  874 (1106)
Q Consensus       816 l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~-~~~~~~v-----------------~~l~~s~~d~~~la~g~~dg---  874 (1106)
                      ++|||||+.|+++.++.|++|++.+++..+.. .++...|                 .+++||| ||++||+++.|.   
T Consensus       115 ~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~  193 (719)
T 1z68_A          115 LCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTDI  193 (719)
T ss_dssp             EEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTTS
T ss_pred             ceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEEEECCCCC
Confidence            99999999999999999999999887765433 2222222                 5899999 999999887652   


Q ss_pred             -------------------------------cEEEEEeecceEE--------EEecCcccCeeEEEEecCCCEEEEEcCC
Q 001295          875 -------------------------------SIQIYNVRVDEVK--------SKLKGHSKRITGLAFSHALNVLVSSGAD  915 (1106)
Q Consensus       875 -------------------------------~v~iwd~~~~~~~--------~~l~~h~~~V~~l~~s~d~~~l~s~s~D  915 (1106)
                                                     .|++||+.+++..        ..+.+|...+.+++||||++++++....
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~  273 (719)
T 1z68_A          194 PVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKR  273 (719)
T ss_dssp             CEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEES
T ss_pred             ceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEecc
Confidence                                           7889999887643        2245688899999999998877775433


Q ss_pred             ----CcEEEEe----CCCcccccceeec-ccCCCCCCCCCCc-----eEEEcCCCcEEEE--E-eCC--eEEEEecCCce
Q 001295          916 ----SQLCVWS----SDGWEKQKNRFLQ-IPTGRTPTAQSDT-----RVQFHQDQIHFLV--V-HET--QLAIFETTKLE  976 (1106)
Q Consensus       916 ----g~i~vwd----~~~~~~~~~~~~~-~~~~~~~~~~~i~-----~~~~s~dg~~l~~--~-~d~--~v~i~d~~~~~  976 (1106)
                          ..|.+||    +.+++....  +. ...++.   ..+.     .++|+|||+.++.  + .++  .|.+||+.+++
T Consensus       274 ~~~~~~l~~~d~~~~~~~g~~~~~--~~~~~~~~~---~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~  348 (719)
T 1z68_A          274 VQNVSVLSICDFREDWQTWDCPKT--QEHIEESRT---GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN  348 (719)
T ss_dssp             STTEEEEEEEEECSSSSSEECCGG--GEEEEECSS---SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT
T ss_pred             ccCeEEEEEEcccCCCCCCceEEE--EecccccCC---ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc
Confidence                2488899    777553221  10 001222   2333     7899999997655  3 333  68888888776


Q ss_pred             EeeecccCCCCCCeeEEEECCCCCEEEEEEcC-----CeEEEEEcCC--cee-EEeeCCCcccCCCCCCCCccceEEEEe
Q 001295          977 CVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAAN--LKL-RCRINPSAYLPAGVSSSNVHPLVIAAH 1048 (1106)
Q Consensus       977 ~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~D-----g~i~vwd~~~--~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~ 1048 (1106)
                      . ..+.  .+...+..+.++ |++.|+..+.+     +.+++|.+..  +.. ...+..  .+. +| ...+.  .+.|+
T Consensus       349 ~-~~lt--~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~--~~~-~~-~~~~~--~~~~s  418 (719)
T 1z68_A          349 A-IQIT--SGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTC--HLR-KE-RCQYY--TASFS  418 (719)
T ss_dssp             C-EECS--CSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESST--TTT-TT-TBCBE--EEEEC
T ss_pred             e-Eecc--cCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccC--ccC-CC-CCceE--EEEEC
Confidence            3 3333  445668888888 88887776655     8889998764  421 222220  011 11 11233  68899


Q ss_pred             CCCCCEEE-EEeCC--CcEEEEeecCCC
Q 001295         1049 PQEPNEFA-LGLSD--GGVHVFEPLESE 1073 (1106)
Q Consensus      1049 ~~d~~~l~-t~~~D--g~v~vW~~~~~~ 1073 (1106)
                      | |+++++ +++.+  ..+.+|++.+++
T Consensus       419 ~-dg~~l~~~~s~~~~p~~~l~d~~~g~  445 (719)
T 1z68_A          419 D-YAKYYALVCYGPGIPISTLHDGRTDQ  445 (719)
T ss_dssp             G-GGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred             C-CCCEEEEEcCCCCCCeEEEEECCCCC
Confidence            9 566655 44444  468899987776

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.84  E-value=3.1e-19  Score=193.93  Aligned_cols=243  Identities=15%  Similarity=0.114  Sum_probs=171.5

Q ss_pred             CcceeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCC-cceeEEeeeeeeccCcCCccccccccCCC-CcCeEE
Q 001295          340 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGS-RERLVLRNFKVWDLGACSMPLQAALVKDP-GVSVNR  417 (1106)
Q Consensus       340 ~~~~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~h-~~~V~~  417 (1106)
                      ..+......|...|.+++|+|+|++ |++++ ++.|.+||+.+ ++...                   +..+| ...|.+
T Consensus        31 ~~~~~~~~~~~~~v~~~~~spdg~~-l~~~~-~~~i~~~d~~~~~~~~~-------------------~~~~~~~~~~~~   89 (297)
T 2ojh_A           31 TRKMRVVWQTPELFEAPNWSPDGKY-LLLNS-EGLLYRLSLAGDPSPEK-------------------VDTGFATICNND   89 (297)
T ss_dssp             TTEEEEEEEESSCCEEEEECTTSSE-EEEEE-TTEEEEEESSSCCSCEE-------------------CCCTTCCCBCSC
T ss_pred             CCceeeeccCCcceEeeEECCCCCE-EEEEc-CCeEEEEeCCCCCCceE-------------------eccccccccccc
Confidence            3345556668999999999999996 66665 78999999998 76543                   13344 468899


Q ss_pred             EEEccCCCEEEEEe--CCCeEEEEEc--cCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCC-CCc
Q 001295          418 VIWSPDGSLFGVAY--SRHIVQIYSY--HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGA  492 (1106)
Q Consensus       418 l~~spdg~~las~~--~d~~v~iwd~--~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~  492 (1106)
                      ++|+|||++|++++  .++.+.||.+  .+++. .   .+..+ ..+..++|+||++. ++++++.++.++||++. .+.
T Consensus        90 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~---~~~~~-~~~~~~~~spdg~~-l~~~~~~~~~~~l~~~~~~~~  163 (297)
T 2ojh_A           90 HGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-R---LMTKN-LPSYWHGWSPDGKS-FTYCGIRDQVFDIYSMDIDSG  163 (297)
T ss_dssp             CEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-E---ECCSS-SSEEEEEECTTSSE-EEEEEEETTEEEEEEEETTTC
T ss_pred             eEECCCCCEEEEEEeCCCCcceEEEEECCCCce-E---EeecC-CCccceEECCCCCE-EEEEECCCCceEEEEEECCCC
Confidence            99999999999998  3345555554  45442 2   24333 34899999999994 34478889999999864 233


Q ss_pred             eeEEEeccCCCeEEEeccccCCceEEEEEe-cCCeEEEEeCC-CCCceeEeeCCCCeeEEEEEecCCCeEEEeeecccee
Q 001295          493 KQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDGKIKAWLYD-NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG  570 (1106)
Q Consensus       493 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~  570 (1106)
                      ....+..|...+.+++|+++  +..|+.++ .++.+++|+++ .......+..+...+..++|+|++             
T Consensus       164 ~~~~~~~~~~~~~~~~~s~d--g~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-------------  228 (297)
T 2ojh_A          164 VETRLTHGEGRNDGPDYSPD--GRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSG-------------  228 (297)
T ss_dssp             CEEECCCSSSCEEEEEECTT--SSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTS-------------
T ss_pred             cceEcccCCCccccceECCC--CCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCC-------------
Confidence            45667778889999998654  46666555 59999999886 334444444444445555555554             


Q ss_pred             EEEEcCCCCEEEEEECC-----------CeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCC
Q 001295          571 VVQFDTTKNRFLAAGDD-----------FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN  632 (1106)
Q Consensus       571 ~~~~~~~~~~l~~~~~d-----------~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg  632 (1106)
                              ++|++++.+           +.|++||+.+++.........+...+.+++|+|++++|++++.+.
T Consensus       229 --------~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          229 --------DKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             --------SEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             --------CEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence                    467776654           679999999887644443222234688999999999998887653

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.83  E-value=1.7e-18  Score=197.35  Aligned_cols=259  Identities=13%  Similarity=0.079  Sum_probs=171.5

Q ss_pred             CCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEE-
Q 001295          350 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG-  428 (1106)
Q Consensus       350 ~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la-  428 (1106)
                      ...++.+++++++.+ +++|+.++ |+||+.........   ...+.. ............|...|.+++|+|+|++|| 
T Consensus        36 ~~~~n~lavs~~~~~-l~~~~~dg-v~v~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~v~~l~~spdg~~lav  109 (434)
T 2oit_A           36 KERSSLLAVSNKYGL-VFAGGASG-LQIFPTKNLLIQNK---PGDDPN-KIVDKVQGLLVPMKFPIHHLALSCDNLTLSA  109 (434)
T ss_dssp             CSCCBCEEEETTTTE-EEEEETTE-EEEEEHHHHCCCCC---TTCCTT-CEEECCCCEEECCSSCEEEEEECTTSCEEEE
T ss_pred             CCCccEEEEecCCCE-EEEECCCE-EEEEEchHhhhhcc---cccCcc-cccccCccccccCCCcccEEEEcCCCCEEEE
Confidence            456899999999994 88888777 89988643211000   000000 000000001134567899999999999999 


Q ss_pred             ---EEeCCCeEEEEEccCC--------ceeeeeeeeccccCCeeEEEEcCC-CCceEEEEecCCCcEEEEeCCCCceeEE
Q 001295          429 ---VAYSRHIVQIYSYHGG--------DEVRQHLEIDAHVGGVNDIAFSHP-NKQLCVITCGDDKTIKVWDATNGAKQYI  496 (1106)
Q Consensus       429 ---s~~~d~~v~iwd~~~~--------~~~~~~~~l~~h~~~V~~~~~s~d-~~~~~l~s~~~d~~i~iwd~~~~~~~~~  496 (1106)
                         +|+.|++|+|||+.++        +.+.....+.+|...|.+++|+|+ +.  +|++++.||+|++||++++..+..
T Consensus       110 ~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~iwD~~~~~~~~~  187 (434)
T 2oit_A          110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIAVLQVTETVKVCA  187 (434)
T ss_dssp             EEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEEEEEESSSEEEEE
T ss_pred             EEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEEEEEcCCCcceee
Confidence               7888999999999865        223334567789999999999998 55  899999999999999999988777


Q ss_pred             EeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCC-------CeeEEEEEecCCCeEEEeeeccce
Q 001295          497 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG-------RWCTTMAYSADGTRTYQGFRKRSL  569 (1106)
Q Consensus       497 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------~~v~~~~~s~~~~~~~~~~~~~~i  569 (1106)
                      ..+|...|.+++|+++  |++|++|+.||.|++||++ ......+..+.       ..+.+++|++++.           
T Consensus       188 ~~~~~~~v~~v~wspd--g~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~-----------  253 (434)
T 2oit_A          188 TLPSTVAVTSVCWSPK--GKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYV-----------  253 (434)
T ss_dssp             EECGGGCEEEEEECTT--SSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTE-----------
T ss_pred             ccCCCCceeEEEEcCC--CCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCce-----------
Confidence            8889999999999765  5799999999999999998 44444333322       1455556555443           


Q ss_pred             eEEEEcCCCCEEEE-EECCC------eEEEEECCCcc-----eeEEEccC-----CCCCCcCeEEEccCCCEEEEEeC-C
Q 001295          570 GVVQFDTTKNRFLA-AGDDF------SIKFWDMDSVQ-----LLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTN-D  631 (1106)
Q Consensus       570 ~~~~~~~~~~~l~~-~~~d~------~i~iwd~~~~~-----~~~~~~~~-----~~~~~v~~v~~s~~~~~l~~~~~-d  631 (1106)
                                ++++ ...+|      .+++|++...+     ....+...     ........+.+-++.+++++++. .
T Consensus       254 ----------~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s  323 (434)
T 2oit_A          254 ----------FAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAAS  323 (434)
T ss_dssp             ----------EEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTC
T ss_pred             ----------EEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCC
Confidence                      4444 33343      38999997642     11222111     11111122333367677666654 4


Q ss_pred             CcEEEEEcc
Q 001295          632 NGIKILATS  640 (1106)
Q Consensus       632 g~i~iwd~~  640 (1106)
                      +.|.++...
T Consensus       324 ~dv~vl~~~  332 (434)
T 2oit_A          324 TEVSILARQ  332 (434)
T ss_dssp             SBCEEEEEC
T ss_pred             CceeEEEec
Confidence            557777643

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.83  E-value=3.6e-19  Score=219.82  Aligned_cols=334  Identities=11%  Similarity=0.064  Sum_probs=218.6

Q ss_pred             EEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCC-CCCcCeEEEccCCCEEEEEeC---------CCcEEEEEccC
Q 001295          572 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG-LPASPRIRFNKDGCLLAVSTN---------DNGIKILATSD  641 (1106)
Q Consensus       572 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~v~~v~~s~~~~~l~~~~~---------dg~i~iwd~~~  641 (1106)
                      +.|+|++. ++..+.|+.|++||+.+++....+..+.. ...+.+++|||||++|++++.         ++.|++||+.+
T Consensus        21 ~~~s~dg~-~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~   99 (719)
T 1z68_A           21 PNWISGQE-YLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN   99 (719)
T ss_dssp             CEESSSSE-EEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred             cEECCCCe-EEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC
Confidence            45666663 55555799999999999998777754321 013789999999999999876         67888888876


Q ss_pred             CchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeE
Q 001295          642 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW  721 (1106)
Q Consensus       642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw  721 (1106)
                      +. .+..                                                                         
T Consensus       100 g~-~~~~-------------------------------------------------------------------------  105 (719)
T 1z68_A          100 GE-FVRG-------------------------------------------------------------------------  105 (719)
T ss_dssp             TE-ECCS-------------------------------------------------------------------------
T ss_pred             Cc-cccc-------------------------------------------------------------------------
Confidence            62 1000                                                                         


Q ss_pred             ecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccc
Q 001295          722 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT  801 (1106)
Q Consensus       722 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~  801 (1106)
                                 ..       -...+..++|||||+.|+.+. ++.|++|++.++....           +-.  .+....
T Consensus       106 -----------~~-------l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~-----------l~~--~~~~~~  153 (719)
T 1z68_A          106 -----------NE-------LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQ-----------ITF--NGRENK  153 (719)
T ss_dssp             -----------SC-------CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEE-----------CCC--CCBTTT
T ss_pred             -----------ee-------cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEE-----------Eec--CCCcCC
Confidence                       00       012356789999999888875 7799998875422100           000  000000


Q ss_pred             cccCCCCCC---------CCeeEEEEecCCCEEEEEe-CC----------------------------------eEEEEE
Q 001295          802 NDVTDSNPE---------EAVPCFALSKNDSYVMSAS-GG----------------------------------KISLFN  837 (1106)
Q Consensus       802 ~~~~~~~~~---------~~v~~l~~s~~~~~l~~~s-dg----------------------------------~i~vwd  837 (1106)
                       .+.+  +.         ....+++|||||++|++++ |.                                  .|++||
T Consensus       154 -v~~g--~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d  230 (719)
T 1z68_A          154 -IFNG--IPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIID  230 (719)
T ss_dssp             -EEES--SCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEE
T ss_pred             -eEcc--cccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEE
Confidence             0000  11         1225899999999999887 42                                  788999


Q ss_pred             cCCCcee--------eeecCCCCCeeEEEEecCCCceEEEeeCCC----cEEEEE----eecceEEEEe----cCcccCe
Q 001295          838 MMTFKTM--------ATFMPPPPAATFLAFHPQDNNIIAIGMDDS----SIQIYN----VRVDEVKSKL----KGHSKRI  897 (1106)
Q Consensus       838 ~~~~~~~--------~~~~~~~~~v~~l~~s~~d~~~la~g~~dg----~v~iwd----~~~~~~~~~l----~~h~~~V  897 (1106)
                      +.+++..        ..+.+|...+..++||| |++++++....+    .|++||    +.++++...+    .+|...+
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~  309 (719)
T 1z68_A          231 TTYPAYVGPQEVPVPAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWA  309 (719)
T ss_dssp             SSCHHHHCCEECCCCHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCS
T ss_pred             CCCCCccceeEccCCccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceE
Confidence            9987653        22346777899999999 688877754332    488899    7788776655    4677777


Q ss_pred             e-----EEEEecCCCEEEE--EcCCC--cEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeC---
Q 001295          898 T-----GLAFSHALNVLVS--SGADS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHE---  964 (1106)
Q Consensus       898 ~-----~l~~s~d~~~l~s--~s~Dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d---  964 (1106)
                      .     .++|+|||+.|+.  ...+|  .|.+|++.+++.   ..+  ..+ .   ..+..+.++ +++.|+. +.+   
T Consensus       310 ~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~---~~l--t~~-~---~~v~~~~~~-d~~~i~~~~~~~~~  379 (719)
T 1z68_A          310 GGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA---IQI--TSG-K---WEAINIFRV-TQDSLFYSSNEFEE  379 (719)
T ss_dssp             SSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC---EEC--SCS-S---SCEEEEEEE-CSSEEEEEESCGGG
T ss_pred             ccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce---Eec--ccC-c---eEEEEEEEE-eCCEEEEEEecCCC
Confidence            7     8999999996554  44555  466677766431   111  111 1   245667777 8887777 444   


Q ss_pred             --CeEEEEecCC--ce-Eeeecc--cCCCCCCeeEEEECCCCCEEEEE-EcC--CeEEEEEcCCceeEEeeC
Q 001295          965 --TQLAIFETTK--LE-CVKQWV--PRESSAPITHATFSCDSQLVYAC-FLD--ATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus       965 --~~v~i~d~~~--~~-~~~~~~--~~~h~~~v~~l~~s~d~~~l~t~-s~D--g~i~vwd~~~~~~~~~~~ 1026 (1106)
                        +..++|.+..  +. ....+.  ..+|...+..+.|+||+++++.. +.+  ..+++||+.+++.+..+.
T Consensus       380 ~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~~  451 (719)
T 1z68_A          380 YPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKILE  451 (719)
T ss_dssp             CTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEEE
T ss_pred             CCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEee
Confidence              6788887653  32 112222  12356788899999999987754 333  468999999888665544

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.82  E-value=1e-18  Score=194.96  Aligned_cols=237  Identities=13%  Similarity=0.089  Sum_probs=180.2

Q ss_pred             EEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCC-CCeeEEEEecCCCce-EEEeeCCCcEEEEEeecceEEEEec
Q 001295          815 CFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNI-IAIGMDDSSIQIYNVRVDEVKSKLK  891 (1106)
Q Consensus       815 ~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~-~~v~~l~~s~~d~~~-la~g~~dg~v~iwd~~~~~~~~~l~  891 (1106)
                      .++++++++++++++ +++|++||..+++.+..+..+. ..+..++|+| ++++ ++++..++.|++||+.+++.+..+.
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~   82 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHAN   82 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECC-CCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence            346777888888887 8999999999998888776443 2578999999 7765 4556678999999999998887776


Q ss_pred             Cc------ccCeeEEEEecCCCEEEEEcCC------------CcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEc
Q 001295          892 GH------SKRITGLAFSHALNVLVSSGAD------------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH  953 (1106)
Q Consensus       892 ~h------~~~V~~l~~s~d~~~l~s~s~D------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  953 (1106)
                      .+      ...+.+++|+|||++|++++.+            +.|.+||+.+++....  +......    ..+.+++|+
T Consensus        83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~--~~~~~~~----~~~~~~~~s  156 (349)
T 1jmx_B           83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP--VRTFPMP----RQVYLMRAA  156 (349)
T ss_dssp             SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCC--SEEEECC----SSCCCEEEC
T ss_pred             cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccce--eeeccCC----CcccceeEC
Confidence            33      2347899999999999998865            8999999988553221  1111111    257889999


Q ss_pred             CCCcEEEEEeCCeEEEEecCCceEeeecccCC------------------------------------------------
Q 001295          954 QDQIHFLVVHETQLAIFETTKLECVKQWVPRE------------------------------------------------  985 (1106)
Q Consensus       954 ~dg~~l~~~~d~~v~i~d~~~~~~~~~~~~~~------------------------------------------------  985 (1106)
                      |||+ ++++ ++.|.+||+.+++.+..+....                                                
T Consensus       157 ~dg~-l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  234 (349)
T 1jmx_B          157 DDGS-LYVA-GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG  234 (349)
T ss_dssp             TTSC-EEEE-SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred             CCCc-EEEc-cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence            9999 5543 3449999999988776654321                                                


Q ss_pred             ------------------CCCCeeEEEECC-CCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEE
Q 001295          986 ------------------SSAPITHATFSC-DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIA 1046 (1106)
Q Consensus       986 ------------------h~~~v~~l~~s~-d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 1046 (1106)
                                        +...+.+++|+| |+++|+++  ++.|++||+.+++.+..+.    ....     +.  .++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~----~~~~-----~~--~~~  301 (349)
T 1jmx_B          235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN----LDHT-----YY--CVA  301 (349)
T ss_dssp             EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE----CSSC-----CC--EEE
T ss_pred             EEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc----CCCC-----cc--ceE
Confidence                              011456778889 99999888  8899999999999887765    1111     33  799


Q ss_pred             EeCCCCCEEEEEeCCCcEEEEeecCCCC
Q 001295         1047 AHPQEPNEFALGLSDGGVHVFEPLESEG 1074 (1106)
Q Consensus      1047 ~~~~d~~~l~t~~~Dg~v~vW~~~~~~~ 1074 (1106)
                      |+| |+++|++++.++.|.+||+.+++.
T Consensus       302 ~s~-dg~~l~~~~~~~~v~v~d~~~~~~  328 (349)
T 1jmx_B          302 FDK-KGDKLYLGGTFNDLAVFNPDTLEK  328 (349)
T ss_dssp             ECS-SSSCEEEESBSSEEEEEETTTTEE
T ss_pred             ECC-CCCEEEEecCCCeEEEEeccccce
Confidence            999 678888888899999999998873

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.82  E-value=7.8e-18  Score=207.43  Aligned_cols=233  Identities=14%  Similarity=0.104  Sum_probs=157.2

Q ss_pred             CCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCc-----CeEEEEEccCCC
Q 001295          351 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV-----SVNRVIWSPDGS  425 (1106)
Q Consensus       351 ~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~-----~V~~l~~spdg~  425 (1106)
                      .....++|+|||++ ++++  ||+|++||+.+++....                   +.+|..     ....++|||||+
T Consensus        17 ~~~~~~~w~~dg~~-~~~~--~~~i~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~Spdg~   74 (740)
T 4a5s_A           17 LKLYSLRWISDHEY-LYKQ--ENNILVFNAEYGNSSVF-------------------LENSTFDEFGHSINDYSISPDGQ   74 (740)
T ss_dssp             CCCCCEEECSSSEE-EEEE--TTEEEEEETTTCCEEEE-------------------ECTTTTTTCCSCCCEEEECTTSS
T ss_pred             ccccccEECCCCcE-EEEc--CCcEEEEECCCCceEEE-------------------EechhhhhhcccccceEECCCCC
Confidence            34668999999984 7775  89999999999986542                   333332     334589999999


Q ss_pred             EEEEEeCC---------CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEE
Q 001295          426 LFGVAYSR---------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI  496 (1106)
Q Consensus       426 ~las~~~d---------~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~  496 (1106)
                      +|++++.+         +.+.+||+.+++...    +..|.+.+...+|||||+  .|+.+ .|+.|++||+.+++..+.
T Consensus        75 ~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~----l~~~~~~~~~~~~SPdG~--~la~~-~~~~i~~~~~~~~~~~~l  147 (740)
T 4a5s_A           75 FILLEYNYVKQWRHSYTASYDIYDLNKRQLIT----EERIPNNTQWVTWSPVGH--KLAYV-WNNDIYVKIEPNLPSYRI  147 (740)
T ss_dssp             EEEEEEEEEECSSSCEEEEEEEEETTTTEECC----SSCCCTTEEEEEECSSTT--CEEEE-ETTEEEEESSTTSCCEEC
T ss_pred             EEEEEECCeeeEEEccceEEEEEECCCCcEEE----cccCCCcceeeEECCCCC--EEEEE-ECCeEEEEECCCCceEEE
Confidence            99999876         566799999987543    667888999999999999  46665 468999999988875542


Q ss_pred             -EeccCCCe-----------------EEEeccccCCceEEEEEecCC-eEEEEeCCCCCceeEeeCCCCeeEEEEEecCC
Q 001295          497 -FEGHEAPV-----------------YSVCPHHKENIQFIFSTALDG-KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG  557 (1106)
Q Consensus       497 -~~~h~~~v-----------------~~~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~  557 (1106)
                       ..++...+                 ..+.|+  +||+.|+.++.|. .+.+|++.......   .+...+..+.+.+.|
T Consensus       148 t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wS--pDg~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G  222 (740)
T 4a5s_A          148 TWTGKEDIIYNGITDWVYEEEVFSAYSALWWS--PNGTFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAG  222 (740)
T ss_dssp             CSCCBTTTEEESBCCHHHHHHTSSSSBCEEEC--TTSSEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTT
T ss_pred             cCCCCccceecCcccccccchhcCCCcceEEC--CCCCEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCc
Confidence             22333322                 236665  5567888877654 48888654221110   122334455555554


Q ss_pred             CeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCC---cc--eeEEEccC----CCCCCcCeEEEccCCCEEEEE
Q 001295          558 TRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS---VQ--LLTSIDAD----GGLPASPRIRFNKDGCLLAVS  628 (1106)
Q Consensus       558 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~---~~--~~~~~~~~----~~~~~v~~v~~s~~~~~l~~~  628 (1106)
                      .                     .    .....|++||+.+   ++  ....+...    ++...+..++|+|||+.++..
T Consensus       223 ~---------------------~----~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~  277 (740)
T 4a5s_A          223 A---------------------V----NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQW  277 (740)
T ss_dssp             S---------------------C----CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEE
T ss_pred             C---------------------c----CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEE
Confidence            3                     1    1123789999998   73  22233221    123467889999999977765


Q ss_pred             eC----CCcEEEEEccCC
Q 001295          629 TN----DNGIKILATSDG  642 (1106)
Q Consensus       629 ~~----dg~i~iwd~~~~  642 (1106)
                      ..    +..|++||+.++
T Consensus       278 ~~r~~~~~~i~~~d~~tg  295 (740)
T 4a5s_A          278 LRRIQNYSVMDICDYDES  295 (740)
T ss_dssp             EESSTTEEEEEEEEEETT
T ss_pred             eCCCCCEEEEEEEECCCC
Confidence            43    236899998877

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.81  E-value=2e-18  Score=207.08  Aligned_cols=234  Identities=10%  Similarity=0.043  Sum_probs=168.4

Q ss_pred             CCCCcEEEEEecCCCeEEEEEec-cCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCC-cCeEEEEEccCCCE
Q 001295          349 QGSSPMSMDFHPVQQTLLLVGTN-VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG-VSVNRVIWSPDGSL  426 (1106)
Q Consensus       349 h~~~v~~~~~sp~g~~llatg~~-dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~-~~V~~l~~spdg~~  426 (1106)
                      +..+|++++|||||++ ||+++. ||++.||++.+++...                    +..|. ..|..++|||| ++
T Consensus        20 ~~~~~~~~~~~~DG~~-la~~s~~~g~~~lw~~~~g~~~~--------------------lt~~~~~~~~~~~~spd-~~   77 (582)
T 3o4h_A           20 IAVEKYSLQGVVDGDK-LLVVGFSEGSVNAYLYDGGETVK--------------------LNREPINSVLDPHYGVG-RV   77 (582)
T ss_dssp             HHSCEEEEEEEETTTE-EEEEEEETTEEEEEEEETTEEEE--------------------CCSSCCSEECEECTTCS-EE
T ss_pred             hccchheeecCCCCCe-EEEEEccCCceeEEEEcCCCcEe--------------------eecccccccccccCCCC-eE
Confidence            3567999999999997 666555 9999999997665433                    34444 68999999999 77


Q ss_pred             EEEEeC---CCeEEEEEccC--CceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccC
Q 001295          427 FGVAYS---RHIVQIYSYHG--GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE  501 (1106)
Q Consensus       427 las~~~---d~~v~iwd~~~--~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~  501 (1106)
                      +++++.   +....||.+..  ......   +..+ ..+...+|+||++.+++++++.++.+ +||+.+++.......+.
T Consensus        78 l~~~~~~~g~~~~~l~~~~~~~~g~~~~---l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~-l~d~~~g~~~~l~~~~~  152 (582)
T 3o4h_A           78 ILVRDVSKGAEQHALFKVNTSRPGEEQR---LEAV-KPMRILSGVDTGEAVVFTGATEDRVA-LYALDGGGLRELARLPG  152 (582)
T ss_dssp             EEEEECSTTSCCEEEEEEETTSTTCCEE---CTTS-CSBEEEEEEECSSCEEEEEECSSCEE-EEEEETTEEEEEEEESS
T ss_pred             EEEeccCCCCcceEEEEEeccCCCcccc---ccCC-CCceeeeeCCCCCeEEEEecCCCCce-EEEccCCcEEEeecCCC
Confidence            777765   45566665543  221121   2222 23456789999987566666666555 99999987665554333


Q ss_pred             CCeEEEeccccCCceEEEEEecC----CeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCC
Q 001295          502 APVYSVCPHHKENIQFIFSTALD----GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT  577 (1106)
Q Consensus       502 ~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~  577 (1106)
                         .+++|+|  ||++|++++.+    +.|++||+.+++.. .+..+...+..++|+|||+                   
T Consensus       153 ---~~~~~sp--DG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~-------------------  207 (582)
T 3o4h_A          153 ---FGFVSDI--RGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMK-------------------  207 (582)
T ss_dssp             ---CEEEEEE--ETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSC-------------------
T ss_pred             ---ceEEECC--CCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCC-------------------
Confidence               6777655  55789988777    78999999876543 4555556666666666665                   


Q ss_pred             CCEEEEEECCC--eEEEEECCCcceeEEEccCCCCCCcCeEE--------EccCCCEEEEEeCCCcEEEEEc
Q 001295          578 KNRFLAAGDDF--SIKFWDMDSVQLLTSIDADGGLPASPRIR--------FNKDGCLLAVSTNDNGIKILAT  639 (1106)
Q Consensus       578 ~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~v~--------~s~~~~~l~~~~~dg~i~iwd~  639 (1106)
                        +|+++..++  .|++||+.+++.. .+..+  ...+..++        |+|||.++++++.++.+++|++
T Consensus       208 --~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          208 --VTAGLETAREARLVTVDPRDGSVE-DLELP--SKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             --EEEEEECSSCEEEEEECTTTCCEE-ECCCS--CSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             --EEEEccCCCeeEEEEEcCCCCcEE-EccCC--CcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence              677777788  8999999998877 55443  33466677        9999999999999999999987

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.81  E-value=1.5e-18  Score=208.14  Aligned_cols=271  Identities=10%  Similarity=0.041  Sum_probs=188.6

Q ss_pred             ccCCeeEEEEcCCCCceEEEEecC-CCcEEEEeCCCCceeEEEeccC-CCeEEEeccccCCceEEEEEec---CCeEEEE
Q 001295          456 HVGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEGHE-APVYSVCPHHKENIQFIFSTAL---DGKIKAW  530 (1106)
Q Consensus       456 h~~~V~~~~~s~d~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~~~---dg~i~iw  530 (1106)
                      +..+|.+++|+|||+  .|++++. |++++||++.+++. ..+..|. ..+..++|+++   +++++++.   +...++|
T Consensus        20 ~~~~~~~~~~~~DG~--~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd---~~l~~~~~~~g~~~~~l~   93 (582)
T 3o4h_A           20 IAVEKYSLQGVVDGD--KLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG---RVILVRDVSKGAEQHALF   93 (582)
T ss_dssp             HHSCEEEEEEEETTT--EEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS---EEEEEEECSTTSCCEEEE
T ss_pred             hccchheeecCCCCC--eEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC---eEEEEeccCCCCcceEEE
Confidence            356899999999999  6777766 99999999866654 4455555 68999998754   67777765   5556676


Q ss_pred             eCCC--CCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCC
Q 001295          531 LYDN--LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG  608 (1106)
Q Consensus       531 d~~~--~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  608 (1106)
                      .++.  ......+... ......+|+|+|+.                    .+++.+.++.+.+||+.+++.......+.
T Consensus        94 ~~~~~~~g~~~~l~~~-~~~~~~~~s~dg~~--------------------~~~~s~~~~~~~l~d~~~g~~~~l~~~~~  152 (582)
T 3o4h_A           94 KVNTSRPGEEQRLEAV-KPMRILSGVDTGEA--------------------VVFTGATEDRVALYALDGGGLRELARLPG  152 (582)
T ss_dssp             EEETTSTTCCEECTTS-CSBEEEEEEECSSC--------------------EEEEEECSSCEEEEEEETTEEEEEEEESS
T ss_pred             EEeccCCCccccccCC-CCceeeeeCCCCCe--------------------EEEEecCCCCceEEEccCCcEEEeecCCC
Confidence            5543  3332222222 22334566666642                    23344444555599999987766554331


Q ss_pred             CCCCcCeEEEccCCCEEEEEeCC----CcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccc
Q 001295          609 GLPASPRIRFNKDGCLLAVSTND----NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLA  684 (1106)
Q Consensus       609 ~~~~v~~v~~s~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  684 (1106)
                           .+++|+|||++|++++.+    +.|++||+.++. .. .                                    
T Consensus       153 -----~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~-~~-~------------------------------------  189 (582)
T 3o4h_A          153 -----FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG-LR-V------------------------------------  189 (582)
T ss_dssp             -----CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC-CE-E------------------------------------
T ss_pred             -----ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC-ce-E------------------------------------
Confidence                 789999999999988766    567777765541 00 0                                    


Q ss_pred             cccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecC
Q 001295          685 DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN  764 (1106)
Q Consensus       685 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  764 (1106)
                                                                                                      
T Consensus       190 --------------------------------------------------------------------------------  189 (582)
T 3o4h_A          190 --------------------------------------------------------------------------------  189 (582)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CC--eEEEEEcCCC
Q 001295          765 AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GG--KISLFNMMTF  841 (1106)
Q Consensus       765 g~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg--~i~vwd~~~~  841 (1106)
                                                             +.  .+...+..++|||||++|+++. ++  .|++||+.++
T Consensus       190 ---------------------------------------l~--~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~  228 (582)
T 3o4h_A          190 ---------------------------------------FD--SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG  228 (582)
T ss_dssp             ---------------------------------------EC--CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC
T ss_pred             ---------------------------------------ee--cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC
Confidence                                                   00  0344456777888888777555 56  7888998888


Q ss_pred             ceeeeecCCCCCeeEEE--------EecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEc
Q 001295          842 KTMATFMPPPPAATFLA--------FHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG  913 (1106)
Q Consensus       842 ~~~~~~~~~~~~v~~l~--------~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s  913 (1106)
                      +.. .+..|...+..++        |+| |+.++++++.||.+++|++  ++...   .+.+.|.+++|+ |++++++++
T Consensus       229 ~~~-~~~~~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s  300 (582)
T 3o4h_A          229 SVE-DLELPSKDFSSYRPTAITWLGYLP-DGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHT  300 (582)
T ss_dssp             CEE-ECCCSCSHHHHHCCSEEEEEEECT-TSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEE
T ss_pred             cEE-EccCCCcChhhhhhccccceeEcC-CCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEc
Confidence            776 6677777777777        999 7799999999999999999  76654   344678999999 999999988


Q ss_pred             CCCc---EEEEeCCC
Q 001295          914 ADSQ---LCVWSSDG  925 (1106)
Q Consensus       914 ~Dg~---i~vwd~~~  925 (1106)
                      .+.+   +.+|+..+
T Consensus       301 ~~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          301 SLSTPPRIVSLPSGE  315 (582)
T ss_dssp             ETTEEEEEEEETTCC
T ss_pred             CCCCCCeEEEEcCCC
Confidence            8754   66666553

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.80  E-value=8.5e-17  Score=198.16  Aligned_cols=328  Identities=10%  Similarity=0.026  Sum_probs=210.7

Q ss_pred             EEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCC-CCc--CeEEEccCCCEEEEEeCC---------CcEEEEE
Q 001295          571 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL-PAS--PRIRFNKDGCLLAVSTND---------NGIKILA  638 (1106)
Q Consensus       571 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~v--~~v~~s~~~~~l~~~~~d---------g~i~iwd  638 (1106)
                      .+.|+|++.+++++  |+.|++||+.+++....+..+... ..+  ..++|||||++|+.++.+         +.+.+||
T Consensus        21 ~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d   98 (740)
T 4a5s_A           21 SLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (740)
T ss_dssp             CEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             ccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEE
Confidence            45566666567775  899999999999988777765421 112  347899999999998876         4455777


Q ss_pred             ccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCce
Q 001295          639 TSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKS  718 (1106)
Q Consensus       639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i  718 (1106)
                      +.++. ..+ +                                                                     
T Consensus        99 ~~~~~-~~~-l---------------------------------------------------------------------  107 (740)
T 4a5s_A           99 LNKRQ-LIT-E---------------------------------------------------------------------  107 (740)
T ss_dssp             TTTTE-ECC-S---------------------------------------------------------------------
T ss_pred             CCCCc-EEE-c---------------------------------------------------------------------
Confidence            66651 100 0                                                                     


Q ss_pred             eeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCC
Q 001295          719 KVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI  798 (1106)
Q Consensus       719 ~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~  798 (1106)
                                           ..+...+...+|||||+.|+.+ .++.|++|++..+.                      
T Consensus       108 ---------------------~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~----------------------  143 (740)
T 4a5s_A          108 ---------------------ERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLP----------------------  143 (740)
T ss_dssp             ---------------------SCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSC----------------------
T ss_pred             ---------------------ccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCc----------------------
Confidence                                 1134568899999999999877 56789998875422                      


Q ss_pred             ccccccCCC------CCC---------CCeeEEEEecCCCEEEEEe-C-C------------------------------
Q 001295          799 MMTNDVTDS------NPE---------EAVPCFALSKNDSYVMSAS-G-G------------------------------  831 (1106)
Q Consensus       799 ~~~~~~~~~------~~~---------~~v~~l~~s~~~~~l~~~s-d-g------------------------------  831 (1106)
                      .......+.      ++.         .....+.|||||++||.++ | +                              
T Consensus       144 ~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~  223 (740)
T 4a5s_A          144 SYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGA  223 (740)
T ss_dssp             CEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTS
T ss_pred             eEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcC
Confidence            111000000      011         2234589999999999875 2 2                              


Q ss_pred             -----eEEEEEcCC---Cc--eeeeec------CCCCCeeEEEEecCCCceEEEeeC----CCcEEEEEeecce----EE
Q 001295          832 -----KISLFNMMT---FK--TMATFM------PPPPAATFLAFHPQDNNIIAIGMD----DSSIQIYNVRVDE----VK  887 (1106)
Q Consensus       832 -----~i~vwd~~~---~~--~~~~~~------~~~~~v~~l~~s~~d~~~la~g~~----dg~v~iwd~~~~~----~~  887 (1106)
                           +|++||+.+   ++  ....+.      ++...+..++||| |+++++....    +..|++||+.+++    +.
T Consensus       224 ~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~  302 (740)
T 4a5s_A          224 VNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNCL  302 (740)
T ss_dssp             CCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEEC
T ss_pred             cCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCcccccee
Confidence                 478899988   73  222333      3677799999999 8886665533    3479999999987    32


Q ss_pred             --EEe--cCcccCee-----EEEEecCCCEEE-EEcC-C--CcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcC
Q 001295          888 --SKL--KGHSKRIT-----GLAFSHALNVLV-SSGA-D--SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ  954 (1106)
Q Consensus       888 --~~l--~~h~~~V~-----~l~~s~d~~~l~-s~s~-D--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~  954 (1106)
                        ..+  .+|...|.     .++|+|||+.|+ ..+. +  ..|.+|++.+++.     ..+..+.    ..+..+. .+
T Consensus       303 ~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~-----~~lT~g~----~~v~~~~-~~  372 (740)
T 4a5s_A          303 VARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC-----TFITKGT----WEVIGIE-AL  372 (740)
T ss_dssp             GGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC-----EESCCSS----SCEEEEE-EE
T ss_pred             EEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce-----EecccCC----EEEEEEE-EE
Confidence              222  45665554     789999999887 6653 3  4588888877543     2222232    1334433 35


Q ss_pred             CCcEEEE-EeC-------CeEEEEecCCceEeeecccC--CCCCCeeEEEECCCCCEEEEEEcC---CeEEEEEcCCcee
Q 001295          955 DQIHFLV-VHE-------TQLAIFETTKLECVKQWVPR--ESSAPITHATFSCDSQLVYACFLD---ATVCVFSAANLKL 1021 (1106)
Q Consensus       955 dg~~l~~-~~d-------~~v~i~d~~~~~~~~~~~~~--~h~~~v~~l~~s~d~~~l~t~s~D---g~i~vwd~~~~~~ 1021 (1106)
                      |++.|+. +..       ..|...++.++.....+...  +....+..+.||||+++++.....   ..+.+++..+++.
T Consensus       373 d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~  452 (740)
T 4a5s_A          373 TSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKG  452 (740)
T ss_dssp             CSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEE
T ss_pred             eCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcE
Confidence            5776666 433       25666666655443233321  234678899999999987765543   3688899888876


Q ss_pred             EEeeC
Q 001295         1022 RCRIN 1026 (1106)
Q Consensus      1022 ~~~~~ 1026 (1106)
                      +..+.
T Consensus       453 ~~~l~  457 (740)
T 4a5s_A          453 LRVLE  457 (740)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            65543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.80  E-value=4.6e-17  Score=182.36  Aligned_cols=275  Identities=11%  Similarity=0.106  Sum_probs=181.3

Q ss_pred             cCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecC----ceEEEeeccccccCCCCccccccC
Q 001295          713 ESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN----AIHLLWKWQRTERNSSGKATASVA  788 (1106)
Q Consensus       713 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~iw~~~~~~~~~~~~~~~~~~  788 (1106)
                      +.++.|.+|.++.....  ...+..  . +......++|+|++++|++++.+    +.+.+|++...             
T Consensus        24 ~~~~~i~~~~~d~~~g~--~~~~~~--~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~-------------   85 (361)
T 3scy_A           24 GNSKGIYTFRFNEETGE--SLPLSD--A-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKE-------------   85 (361)
T ss_dssp             SSCCEEEEEEEETTTCC--EEEEEE--E-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETT-------------
T ss_pred             CCCCCEEEEEEeCCCCC--EEEeec--c-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCC-------------
Confidence            34678999988643221  111111  1 44566779999999999888875    79999987531             


Q ss_pred             ccccCCCCCCcccc-ccCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCCceeeee------cC--------CC
Q 001295          789 PQLWQPPSGIMMTN-DVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATF------MP--------PP  851 (1106)
Q Consensus       789 ~~~w~~~~~~~~~~-~~~~~~~~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~------~~--------~~  851 (1106)
                             +|.+... ...  .+......+++  ++++|++++  ++.|.+|++.....+..+      .+        +.
T Consensus        86 -------~g~~~~~~~~~--~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~  154 (361)
T 3scy_A           86 -------KGTLHLLNTQK--TMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTM  154 (361)
T ss_dssp             -------TTEEEEEEEEE--CSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSS
T ss_pred             -------CCcEEEeeEec--cCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCC
Confidence                   1211110 011  13445667777  888888876  689999999754333221      11        12


Q ss_pred             CCeeEEEEecCCCceEEE-eeCCCcEEEEEeecce-------EE------EEecCcccCeeEEEEecCCCEEEEEc-CCC
Q 001295          852 PAATFLAFHPQDNNIIAI-GMDDSSIQIYNVRVDE-------VK------SKLKGHSKRITGLAFSHALNVLVSSG-ADS  916 (1106)
Q Consensus       852 ~~v~~l~~s~~d~~~la~-g~~dg~v~iwd~~~~~-------~~------~~l~~h~~~V~~l~~s~d~~~l~s~s-~Dg  916 (1106)
                      ..+.+++|+| ++++|++ +..++.|++|++....       +.      .....+...+.+++|+|||++|++++ .++
T Consensus       155 ~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~  233 (361)
T 3scy_A          155 PHLHCVRITP-DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGG  233 (361)
T ss_dssp             CCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTC
T ss_pred             CcceEEEECC-CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCC
Confidence            3458899999 7875554 4458899999987533       11      11223455678999999999887776 689


Q ss_pred             cEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-e--CCeEEEEecC--Cce--EeeecccCCCCCC
Q 001295          917 QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H--ETQLAIFETT--KLE--CVKQWVPRESSAP  989 (1106)
Q Consensus       917 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~--d~~v~i~d~~--~~~--~~~~~~~~~h~~~  989 (1106)
                      .|.+|++.+++......+.....+.   ..+..++|+|||++|+++ .  ++.|.+|++.  +++  .+..+.  . ...
T Consensus       234 ~v~v~~~~~g~~~~~~~~~~~~~~~---~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~--~-g~~  307 (361)
T 3scy_A          234 TVIAFRYADGMLDEIQTVAADTVNA---QGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL--T-GIH  307 (361)
T ss_dssp             EEEEEEEETTEEEEEEEEESCSSCC---CCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE--C-SSC
T ss_pred             eEEEEEecCCceEEeEEEecCCCCC---CCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec--C-CCC
Confidence            9999999876432222222222211   245799999999998774 3  4789999995  444  333333  2 457


Q ss_pred             eeEEEECCCCCEEEEEE-cCCeEEEEEc--CCceeEE
Q 001295          990 ITHATFSCDSQLVYACF-LDATVCVFSA--ANLKLRC 1023 (1106)
Q Consensus       990 v~~l~~s~d~~~l~t~s-~Dg~i~vwd~--~~~~~~~ 1023 (1106)
                      +.+++|+|||++|++++ .++.|.+|++  .++++..
T Consensus       308 ~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~  344 (361)
T 3scy_A          308 PRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTD  344 (361)
T ss_dssp             CCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             CceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEee
Confidence            88999999999998887 6789999654  5776654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.80  E-value=9.1e-17  Score=179.96  Aligned_cols=230  Identities=12%  Similarity=0.113  Sum_probs=146.3

Q ss_pred             ceEEEEEcCCCceEEEee-cCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCC
Q 001295          745 KISRLIFTNSGNAILALA-SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS  823 (1106)
Q Consensus       745 ~i~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~  823 (1106)
                      ....+++  +++.++++. .++.+.+|++..........      ..+.....+....     ..+...+.+++|+|+|+
T Consensus       101 ~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~------~~~~~~g~~~~~~-----~~~~~~~~~~~~spdg~  167 (361)
T 3scy_A          101 DPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPAS------DVIEFKGSGPDKE-----RQTMPHLHCVRITPDGK  167 (361)
T ss_dssp             CEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCS------EEEECCCCCSCTT-----TCSSCCEEEEEECTTSS
T ss_pred             CcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccc------eeEEccCCCCCcc-----ccCCCcceEEEECCCCC
Confidence            4455666  777776666 47899999986321100000      0000000010000     01344578999999999


Q ss_pred             EEEEEe--CCeEEEEEcCCCce------e-------eeecCCCCCeeEEEEecCCCceEEEee-CCCcEEEEEeecceE-
Q 001295          824 YVMSAS--GGKISLFNMMTFKT------M-------ATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRVDEV-  886 (1106)
Q Consensus       824 ~l~~~s--dg~i~vwd~~~~~~------~-------~~~~~~~~~v~~l~~s~~d~~~la~g~-~dg~v~iwd~~~~~~-  886 (1106)
                      ++++++  ++.|.+|++.....      +       .....+...+..++|+| |+++|++++ .++.|.+|++.+++. 
T Consensus       168 ~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~  246 (361)
T 3scy_A          168 YLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGMLD  246 (361)
T ss_dssp             EEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEEE
T ss_pred             EEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCceE
Confidence            877766  68999999875431      1       11223455688999999 888777766 689999999997754 


Q ss_pred             -EEEe---cCcccCeeEEEEecCCCEEEEEcC--CCcEEEEeCC--CcccccceeecccCCCCCCCCCCceEEEcCCCcE
Q 001295          887 -KSKL---KGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD--GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH  958 (1106)
Q Consensus       887 -~~~l---~~h~~~V~~l~~s~d~~~l~s~s~--Dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~  958 (1106)
                       +..+   ..+.....+++|+|||++|+++..  ++.|.+|+++  +++......+.  .+     ..+..++|+|||++
T Consensus       247 ~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~--~g-----~~~~~~~~spdg~~  319 (361)
T 3scy_A          247 EIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL--TG-----IHPRNFIITPNGKY  319 (361)
T ss_dssp             EEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE--CS-----SCCCEEEECTTSCE
T ss_pred             EeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec--CC-----CCCceEEECCCCCE
Confidence             2323   334455789999999999876665  4899999996  33321111111  12     35689999999999


Q ss_pred             EEEE--eCCeEEEE--ecCCceEeeecccCCCCCCeeEEEEC
Q 001295          959 FLVV--HETQLAIF--ETTKLECVKQWVPRESSAPITHATFS  996 (1106)
Q Consensus       959 l~~~--~d~~v~i~--d~~~~~~~~~~~~~~h~~~v~~l~~s  996 (1106)
                      |+++  .++.|.+|  |..+++...... ..+...+.|+.|.
T Consensus       320 l~~~~~~~~~v~v~~~d~~~g~~~~~~~-~~~~~~p~~v~~~  360 (361)
T 3scy_A          320 LLVACRDTNVIQIFERDQATGLLTDIKK-DIKVDKPVCLKFV  360 (361)
T ss_dssp             EEEEETTTTEEEEEEECTTTCCEEECSC-CEECSSEEEEEEE
T ss_pred             EEEEECCCCCEEEEEEECCCCcEeecce-eeeCCCCeEEEEc
Confidence            8885  46889996  555676654421 1235678898885

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.80  E-value=1.2e-17  Score=187.10  Aligned_cols=251  Identities=11%  Similarity=0.105  Sum_probs=170.5

Q ss_pred             CCCeeEEEEecCCCEEEEEeCCeEEEEEcC-CCceeeeecC-CCCCeeEEEEecCCCc--eEEEee-------------C
Q 001295          810 EEAVPCFALSKNDSYVMSASGGKISLFNMM-TFKTMATFMP-PPPAATFLAFHPQDNN--IIAIGM-------------D  872 (1106)
Q Consensus       810 ~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~-~~~~~~~~~~-~~~~v~~l~~s~~d~~--~la~g~-------------~  872 (1106)
                      ...+..++++|||++|++++.+.|.+|++. +++....... ..+.+.+++|+| +++  +++++.             .
T Consensus        39 ~~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~  117 (365)
T 1jof_A           39 DEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKF  117 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSS
T ss_pred             CCCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecC
Confidence            346788999999999998884499999997 7765443221 112366789999 787  455553             6


Q ss_pred             CCcEEEEEee-cceEEEEec----CcccCeeEEEEecCCCEEEEEc-CCCcEEEEeCC-CcccccceeecccCCCCCCCC
Q 001295          873 DSSIQIYNVR-VDEVKSKLK----GHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSD-GWEKQKNRFLQIPTGRTPTAQ  945 (1106)
Q Consensus       873 dg~v~iwd~~-~~~~~~~l~----~h~~~V~~l~~s~d~~~l~s~s-~Dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~  945 (1106)
                      +|.+.+|++. ++++...+.    .+...+.+++|+|||++|++++ .++.|++|++. +++......+.... +.   .
T Consensus       118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-~g---~  193 (365)
T 1jof_A          118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD-PG---D  193 (365)
T ss_dssp             CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS-TT---C
T ss_pred             CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC-CC---C
Confidence            8999999997 466554443    2556799999999999888765 46789999998 55432111111111 01   2


Q ss_pred             CCceEEEcCCCcEEEEE--eCCeEEEEecC--CceEe------eeccc--CCCCC------CeeEEE-ECCCCCEEEEEE
Q 001295          946 SDTRVQFHQDQIHFLVV--HETQLAIFETT--KLECV------KQWVP--RESSA------PITHAT-FSCDSQLVYACF 1006 (1106)
Q Consensus       946 ~i~~~~~s~dg~~l~~~--~d~~v~i~d~~--~~~~~------~~~~~--~~h~~------~v~~l~-~s~d~~~l~t~s 1006 (1106)
                      .+..++|+|||++++++  .++.|.+|++.  +++..      ..+..  .+|..      .+..++ |+|||++|++++
T Consensus       194 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~  273 (365)
T 1jof_A          194 HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS  273 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred             CCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEEC
Confidence            56899999999998885  36799999765  45542      12211  12222      588999 999999988776


Q ss_pred             cCC------eEEEEEcC-CceeEEeeCCCcccCCCCCCCCccceEEEEeCC--CCCEEEEEeCC-CcEEEEeecCC
Q 001295         1007 LDA------TVCVFSAA-NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ--EPNEFALGLSD-GGVHVFEPLES 1072 (1106)
Q Consensus      1007 ~Dg------~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--d~~~l~t~~~D-g~v~vW~~~~~ 1072 (1106)
                      .+.      +|.+|++. ++++.....   ..+ .+ .....  .++|+|.  ||++|++++.+ +.|.+|++...
T Consensus       274 ~~~~~~~~~~i~v~~~~~~g~~~~~~~---~~~-~~-~~~~~--~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          274 RANKFELQGYIAGFKLRDCGSIEKQLF---LSP-TP-TSGGH--SNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EESSTTSCCEEEEEEECTTSCEEEEEE---EEE-CS-SCCTT--CCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCCCCCCCeEEEEEECCCCCEEEeee---eee-cC-CCCcc--cceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            433      89999996 666543211   000 00 11122  5889995  58898888764 89999999875

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.79  E-value=1.4e-17  Score=185.79  Aligned_cols=304  Identities=10%  Similarity=0.014  Sum_probs=190.0

Q ss_pred             EEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccC-CCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeE
Q 001295          462 DIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE-APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD  540 (1106)
Q Consensus       462 ~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  540 (1106)
                      .+++++++.  ++++++.+++|++||+.+++.+..+..+. ..+..++|+++.. .+++++..++.|.+||+.+.+....
T Consensus         4 g~~~~~~~~--~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~~~v~~~~~~~i~~~d~~t~~~~~~   80 (349)
T 1jmx_B            4 GPALKAGHE--YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNR-TAYVLNNHYGDIYGIDLDTCKNTFH   80 (349)
T ss_dssp             CCCCCTTCE--EEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSS-EEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             cccccCCCE--EEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCC-EEEEEeCCCCcEEEEeCCCCcEEEE
Confidence            356777777  89999999999999999999988887543 2567788765432 3455666799999999987665544


Q ss_pred             eeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECC------------CeEEEEECCCcce---eEEEc
Q 001295          541 YEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD------------FSIKFWDMDSVQL---LTSID  605 (1106)
Q Consensus       541 ~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------------~~i~iwd~~~~~~---~~~~~  605 (1106)
                      +......        +       .....+..+.++|+++++++++.+            +.|.+||+.+++.   +..+.
T Consensus        81 ~~~~~~~--------~-------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~  145 (349)
T 1jmx_B           81 ANLSSVP--------G-------EVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP  145 (349)
T ss_dssp             EESCCST--------T-------EEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE
T ss_pred             EEccccc--------c-------cccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc
Confidence            4332110        0       000123445566666677777754            8999999988543   34443


Q ss_pred             cCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhccccccc
Q 001295          606 ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLAD  685 (1106)
Q Consensus       606 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  685 (1106)
                      ..   ..+.+++|+|+|+ +++++  +.|.+||..++ +....+.......                             
T Consensus       146 ~~---~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~-~~~~~~~~~~~~~-----------------------------  189 (349)
T 1jmx_B          146 MP---RQVYLMRAADDGS-LYVAG--PDIYKMDVKTG-KYTVALPLRNWNR-----------------------------  189 (349)
T ss_dssp             CC---SSCCCEEECTTSC-EEEES--SSEEEECTTTC-CEEEEECSTTCCC-----------------------------
T ss_pred             CC---CcccceeECCCCc-EEEcc--CcEEEEeCCCC-ceeccccccccCC-----------------------------
Confidence            33   2478899999999 55554  44999999877 3322221100000                             


Q ss_pred             ccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEE------
Q 001295          686 RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAIL------  759 (1106)
Q Consensus       686 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~------  759 (1106)
                                   ...           .....+.+|......             ........+++++++....      
T Consensus       190 -------------~~~-----------~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~d~~~~~~~~~~~  232 (349)
T 1jmx_B          190 -------------KGY-----------SAPDVLYFWPHQSPR-------------HEFSMLYTIARFKDDKQDPATADLL  232 (349)
T ss_dssp             -------------TTB-----------CCCBCCCCCCCCCTT-------------CEEEEEEEEEEC-------CCCEEE
T ss_pred             -------------ccc-----------cCccceeeecCCCcc-------------eeEEeeeeeeecCCCcCCccccccc
Confidence                         000           000011122211100             0001233456665542211      


Q ss_pred             -----EeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEec-CCCEEEEEeCCeE
Q 001295          760 -----ALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSYVMSASGGKI  833 (1106)
Q Consensus       760 -----~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~sdg~i  833 (1106)
                           ....++.+++|++.                                .  +...+..++++| ++++++++ ++.|
T Consensus       233 ~~~~~~~~~~~~~~~~~~~--------------------------------~--~~~~~~~~~~sp~dg~~l~~~-~~~v  277 (349)
T 1jmx_B          233 YGYLSVDLKTGKTHTQEFA--------------------------------D--LTELYFTGLRSPKDPNQIYGV-LNRL  277 (349)
T ss_dssp             EEEEEEETTTCCEEEEEEE--------------------------------E--CSSCEEEEEECSSCTTEEEEE-ESEE
T ss_pred             eeEEEEeccCCcEEecccc--------------------------------c--CCCcceeeEecCCCCCEEEEE-cCeE
Confidence                 11122333333321                                1  455688999999 99999988 8999


Q ss_pred             EEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCc
Q 001295          834 SLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH  893 (1106)
Q Consensus       834 ~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h  893 (1106)
                      .+||+.+++.+..+.. ...+.+++|+| ++++|++++.++.|++||+.+++.+..+..+
T Consensus       278 ~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          278 AKYDLKQRKLIKAANL-DHTYYCVAFDK-KGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             EEEETTTTEEEEEEEC-SSCCCEEEECS-SSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             EEEECccCeEEEEEcC-CCCccceEECC-CCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence            9999999988777763 34578999999 7887888888999999999999988887654

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.75  E-value=3e-16  Score=174.42  Aligned_cols=221  Identities=13%  Similarity=0.085  Sum_probs=156.2

Q ss_pred             CeeEEEEecCCCEEEEEe---CCeEEEEEcCCCceeee-ecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeec-ceE
Q 001295          812 AVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEV  886 (1106)
Q Consensus       812 ~v~~l~~s~~~~~l~~~s---dg~i~vwd~~~~~~~~~-~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~-~~~  886 (1106)
                      ....++++|||++|+++.   +++|.+||+.+++.+.. +...  ....+.+.|++...+++.+.||.+.+|+... ++.
T Consensus       109 ~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~  186 (361)
T 2oiz_A          109 YDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKV  186 (361)
T ss_dssp             CGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSE
T ss_pred             CcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcE
Confidence            355688999999988875   47899999999988877 5532  2233567784557788889999999999865 555


Q ss_pred             EE------EecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeccc------CCCCCCCCCCceEEEcC
Q 001295          887 KS------KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP------TGRTPTAQSDTRVQFHQ  954 (1106)
Q Consensus       887 ~~------~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~------~~~~~~~~~i~~~~~s~  954 (1106)
                      ..      .+..+..++ .+.+++++..++..+.++.|.++|+..............      .+..+  .....++|+|
T Consensus       187 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p--~g~~~~a~~~  263 (361)
T 2oiz_A          187 ASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVP--GGYNLVGLHR  263 (361)
T ss_dssp             EEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEE--CCSSCEEEET
T ss_pred             eeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccccccccc--CCeeEEEEec
Confidence            42      222233332 344578888888888999999999976432211111110      00000  1234589999


Q ss_pred             CCcEEEEE-e-----------CCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCc--e
Q 001295          955 DQIHFLVV-H-----------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL--K 1020 (1106)
Q Consensus       955 dg~~l~~~-~-----------d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~--~ 1020 (1106)
                      |++.+.++ .           .+.|.+||+.+++.+..+..  +.  +.+++|+|||++|++++. ++|.|||..++  +
T Consensus       264 dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~--~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~  338 (361)
T 2oiz_A          264 ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPG--RD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPK  338 (361)
T ss_dssp             TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEEC--TT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCE
T ss_pred             CCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEec--CC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcce
Confidence            98888774 3           34899999999999998874  33  999999999999998886 99999999999  8


Q ss_pred             eEEeeCCCcccCCCCCCCCccceEEEEeCCCCC
Q 001295         1021 LRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN 1053 (1106)
Q Consensus      1021 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~ 1053 (1106)
                      .+.++.     +.|     -.|..++++| ||.
T Consensus       339 ~~~~i~-----~~G-----~~P~~~~~~p-~G~  360 (361)
T 2oiz_A          339 LLRTIE-----GAA-----EASLQVQFHP-VGG  360 (361)
T ss_dssp             EEEEET-----TSC-----SSEEEEEECC-CSC
T ss_pred             eeEEec-----cCC-----CCcEEEEecC-CCC
Confidence            888764     112     3455799999 554

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.75  E-value=1.6e-16  Score=177.76  Aligned_cols=251  Identities=11%  Similarity=0.031  Sum_probs=168.9

Q ss_pred             cceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCcccc-ccCCCCCCCCeeEEEEecCC
Q 001295          744 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN-DVTDSNPEEAVPCFALSKND  822 (1106)
Q Consensus       744 ~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~v~~l~~s~~~  822 (1106)
                      ..+..++|+|++++|++++.+ .+.+|++..                     +|.+... ....  + ..+.+++++|||
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~---------------------~g~~~~~~~~~~--~-g~~~~~~~spdg   94 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKS---------------------PTEIVHEASHPI--G-GHPRANDADTNT   94 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBT-EEEEEEEEE---------------------TTEEEEEEEEEC--C-SSGGGGCTTSCC
T ss_pred             CCCcEEEECCCCCEEEEEccc-eEEEEEECC---------------------CCCEEEeeEeec--C-CCCccEEECCCC
Confidence            467889999999988888877 899998751                     1111100 0000  1 124558899999


Q ss_pred             CE--EEEE--------------eCCeEEEEEcC-CCceeeeec----CCCCCeeEEEEecCCCceEEEee-CCCcEEEEE
Q 001295          823 SY--VMSA--------------SGGKISLFNMM-TFKTMATFM----PPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYN  880 (1106)
Q Consensus       823 ~~--l~~~--------------sdg~i~vwd~~-~~~~~~~~~----~~~~~v~~l~~s~~d~~~la~g~-~dg~v~iwd  880 (1106)
                      ++  ++++              .+|++.+|++. +++....+.    .+...+.+++|+| |+++|++++ .++.|++|+
T Consensus        95 ~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~  173 (365)
T 1jof_A           95 RAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHR  173 (365)
T ss_dssp             EEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEE
T ss_pred             CEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC-CCCEEEEEcCCCCEEEEEE
Confidence            94  4444              36889999997 465544333    2456799999999 888877765 367999999


Q ss_pred             ee-cceEE--EEec--CcccCeeEEEEecCCCEEEEEcC-CCcEEEEeCC--Cccccc-ceeecccCCCCCC-CC-----
Q 001295          881 VR-VDEVK--SKLK--GHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSD--GWEKQK-NRFLQIPTGRTPT-AQ-----  945 (1106)
Q Consensus       881 ~~-~~~~~--~~l~--~h~~~V~~l~~s~d~~~l~s~s~-Dg~i~vwd~~--~~~~~~-~~~~~~~~~~~~~-~~-----  945 (1106)
                      +. +++..  ..+.  .|...+..++|+|||++|++++. +++|.+|+++  +++... ...+......... ..     
T Consensus       174 ~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~  253 (365)
T 1jof_A          174 KLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKG  253 (365)
T ss_dssp             ECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSB
T ss_pred             ECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccc
Confidence            98 67643  3343  24567899999999999887765 7899999876  333211 0112222111000 01     


Q ss_pred             -CCceEE-EcCCCcEEEEE--eCC-----eEEEEecC-CceEeeecc-cCCCCCCeeEEEECC---CCCEEEEEEcC-Ce
Q 001295          946 -SDTRVQ-FHQDQIHFLVV--HET-----QLAIFETT-KLECVKQWV-PRESSAPITHATFSC---DSQLVYACFLD-AT 1010 (1106)
Q Consensus       946 -~i~~~~-~s~dg~~l~~~--~d~-----~v~i~d~~-~~~~~~~~~-~~~h~~~v~~l~~s~---d~~~l~t~s~D-g~ 1010 (1106)
                       .+..++ |+|||++|+++  .++     .|.+|++. +++...... ...+...+..++|+|   ||++|++++.+ ++
T Consensus       254 ~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~  333 (365)
T 1jof_A          254 LYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGW  333 (365)
T ss_dssp             SEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCE
T ss_pred             cccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCe
Confidence             367899 99999998774  333     89999996 565443211 113345677899999   89999998865 89


Q ss_pred             EEEEEcCCce
Q 001295         1011 VCVFSAANLK 1020 (1106)
Q Consensus      1011 i~vwd~~~~~ 1020 (1106)
                      |.+|+++...
T Consensus       334 v~v~~~~~~~  343 (365)
T 1jof_A          334 LEIYRWKDEF  343 (365)
T ss_dssp             EEEEEEETTE
T ss_pred             EEEEEEchhh
Confidence            9999997763

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.74  E-value=2.9e-16  Score=177.93  Aligned_cols=207  Identities=10%  Similarity=0.034  Sum_probs=140.3

Q ss_pred             cCCCCcCeEE-----EEEccCCCEEEEEeC-CC--eEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecC
Q 001295          408 VKDPGVSVNR-----VIWSPDGSLFGVAYS-RH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD  479 (1106)
Q Consensus       408 ~~~h~~~V~~-----l~~spdg~~las~~~-d~--~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~  479 (1106)
                      +..|...+..     .+|||||++|+.++. ++  .|.+||+.+++...   ...+|...+..++|+|||+  .|+.++.
T Consensus        26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~--~l~~~~~  100 (388)
T 3pe7_A           26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDD--ALFYVKD  100 (388)
T ss_dssp             CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSS--EEEEEET
T ss_pred             ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCC--EEEEEeC
Confidence            5566655555     889999999999987 66  48888999887554   2345666666789999999  7888888


Q ss_pred             CCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEE----------------------ecCCeEEEEeCCCCCc
Q 001295          480 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFST----------------------ALDGKIKAWLYDNLGS  537 (1106)
Q Consensus       480 d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~----------------------~~dg~i~iwd~~~~~~  537 (1106)
                      ++.|++||+.+++....+..+...+....|..++++.+++..                      ..+..|.+||+.+++.
T Consensus       101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~  180 (388)
T 3pe7_A          101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES  180 (388)
T ss_dssp             TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred             CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence            899999999999887777767666655555446676777643                      2346789999887643


Q ss_pred             eeEeeCCCCeeEEEEEec-CCCeEEEeeeccceeEEEEcCCCCEEEEEEC------CCeEEEEECCCcceeEEEccCCCC
Q 001295          538 RVDYEAPGRWCTTMAYSA-DGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD------DFSIKFWDMDSVQLLTSIDADGGL  610 (1106)
Q Consensus       538 ~~~~~~~~~~v~~~~~s~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~  610 (1106)
                      . .+..+...+..+.|+| ||+                     .++....      ...|.++|..+++. ..+..+...
T Consensus       181 ~-~l~~~~~~~~~~~~sp~dg~---------------------~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~  237 (388)
T 3pe7_A          181 T-VILQENQWLGHPIYRPYDDS---------------------TVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEG  237 (388)
T ss_dssp             E-EEEEESSCEEEEEEETTEEE---------------------EEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTT
T ss_pred             E-EeecCCccccccEECCCCCC---------------------EEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCC
Confidence            3 3333334455556666 554                     5655543      34788888876544 333322211


Q ss_pred             CCcCeEEEccCCCEEEEEeC-CC----cEEEEEccCC
Q 001295          611 PASPRIRFNKDGCLLAVSTN-DN----GIKILATSDG  642 (1106)
Q Consensus       611 ~~v~~v~~s~~~~~l~~~~~-dg----~i~iwd~~~~  642 (1106)
                      ..+..++|+|||+.|+..+. ++    .|++||+.++
T Consensus       238 ~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g  274 (388)
T 3pe7_A          238 ESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETL  274 (388)
T ss_dssp             EEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTC
T ss_pred             cccccceECCCCCEEEEEecCCCCCcceEEEEecCCC
Confidence            23667899999997765443 22    2778877665

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.74  E-value=3e-16  Score=177.90  Aligned_cols=250  Identities=12%  Similarity=0.006  Sum_probs=160.2

Q ss_pred             eeccCCCCcEE-----EEEecCCCeEEEEEeccCc--EEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEE
Q 001295          345 RTLNQGSSPMS-----MDFHPVQQTLLLVGTNVGD--IGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR  417 (1106)
Q Consensus       345 ~~~~h~~~v~~-----~~~sp~g~~llatg~~dg~--i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~  417 (1106)
                      ++..|...+..     .+|||||++|++++..+|.  |.+||+.+++...                   +..+|...+..
T Consensus        25 ~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~-------------------lt~~~~~~~~~   85 (388)
T 3pe7_A           25 RLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ-------------------LTEGRGDNTFG   85 (388)
T ss_dssp             ECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE-------------------CCCSSCBCSSS
T ss_pred             EecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE-------------------eeeCCCCCccc
Confidence            33335555555     8999999985544443674  8888998887654                   24556666667


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEE--EcCCCCceEEEE-------------------
Q 001295          418 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIA--FSHPNKQLCVIT-------------------  476 (1106)
Q Consensus       418 l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~--~s~d~~~~~l~s-------------------  476 (1106)
                      ++|||||++|+.++.++.|++||+.+++...   .+..+...+....  ++++++  +++.                   
T Consensus        86 ~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~~~~~~~~~~~~  160 (388)
T 3pe7_A           86 GFLSPDDDALFYVKDGRNLMRVDLATLEENV---VYQVPAEWVGYGTWVANSDCT--KLVGIEIRREDWVPLTDWKKFHE  160 (388)
T ss_dssp             CEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSS--EEEEEEEEGGGCCCCCSHHHHHH
T ss_pred             eEEcCCCCEEEEEeCCCeEEEEECCCCccee---eeechhhcccccceeECCCCC--eeccccccCcccccccccchhhh
Confidence            8899999999999999999999999987544   2334444454444  489998  4542                   


Q ss_pred             ---ecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecC------CeEEEEeCCCCCceeEeeCCC--
Q 001295          477 ---CGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD------GKIKAWLYDNLGSRVDYEAPG--  545 (1106)
Q Consensus       477 ---~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~--  545 (1106)
                         .+.+..|.+||+.+++.. .+..+...+..+.|+|. +|..|+.+..+      ..|.++|........ +..+.  
T Consensus       161 ~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~  237 (388)
T 3pe7_A          161 FYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPY-DDSTVAFCHEGPHDLVDARMWLINEDGTNMRK-VKTHAEG  237 (388)
T ss_dssp             HGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETT-EEEEEEEEECSCTTTSSCSEEEEETTSCCCEE-SCCCCTT
T ss_pred             hhccCCcceEEEEECCCCceE-EeecCCccccccEECCC-CCCEEEEEEecCCCCCcceEEEEeCCCCceEE-eeeCCCC
Confidence               234578999999998654 44456777888888651 44677766653      367777776543322 22222  


Q ss_pred             CeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEE-C-C---CeEEEEECCCcceeEEEccCC--CC-CCcCeEE
Q 001295          546 RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-D-D---FSIKFWDMDSVQLLTSIDADG--GL-PASPRIR  617 (1106)
Q Consensus       546 ~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~-d---~~i~iwd~~~~~~~~~~~~~~--~~-~~v~~v~  617 (1106)
                      ..+....|+|||+                     .|+..+ . +   ..|++||+.+++.........  +. .....++
T Consensus       238 ~~~~~~~~spdg~---------------------~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~  296 (388)
T 3pe7_A          238 ESCTHEFWVPDGS---------------------ALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSL  296 (388)
T ss_dssp             EEEEEEEECTTSS---------------------CEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSE
T ss_pred             cccccceECCCCC---------------------EEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCe
Confidence            2355556666665                     443322 2 1   249999999987543322211  00 0123458


Q ss_pred             EccCCCEEEEE---------eCCCcEEEEEccCC
Q 001295          618 FNKDGCLLAVS---------TNDNGIKILATSDG  642 (1106)
Q Consensus       618 ~s~~~~~l~~~---------~~dg~i~iwd~~~~  642 (1106)
                      |+|||+.|+..         ..+..|++||+.++
T Consensus       297 ~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~  330 (388)
T 3pe7_A          297 MVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG  330 (388)
T ss_dssp             EEEEECCC------------CCCCEEEEEETTTT
T ss_pred             EccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence            99999988864         44567889988765

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.71  E-value=4.2e-15  Score=165.16  Aligned_cols=304  Identities=10%  Similarity=0.089  Sum_probs=193.3

Q ss_pred             CCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEe----------cCCeEEEEeCCCCCceeEeeCCCCee
Q 001295          479 DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA----------LDGKIKAWLYDNLGSRVDYEAPGRWC  548 (1106)
Q Consensus       479 ~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~v  548 (1106)
                      .|+.|.+||..+++.+..+..+..+  .++|++  ++++++++.          .++.|.+||..+.+....+.......
T Consensus        29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~sp--dg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~  104 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSN--DGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRV  104 (361)
T ss_dssp             GGCEEEEEETTTCCEEEEEECCEEE--EEEECT--TSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBC
T ss_pred             ccCeEEEEECCCCeEEEEecCCCCC--ceEECC--CCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccc
Confidence            4789999999999999888876655  777654  557888776          36789999998776665554321100


Q ss_pred             EEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEEC--CCeEEEEECCCcceeEE-EccCCCCCCcCeEEEccCC-CE
Q 001295          549 TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD--DFSIKFWDMDSVQLLTS-IDADGGLPASPRIRFNKDG-CL  624 (1106)
Q Consensus       549 ~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~~~-~~  624 (1106)
                      .               .......+.++|+|++|+++..  ++.|.+||+.+++.+.. +...    ....+.+.|++ ..
T Consensus       105 ~---------------~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~----~~~~v~~~p~~~~~  165 (361)
T 2oiz_A          105 Q---------------GLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA----GCWSVIPQPNRPRS  165 (361)
T ss_dssp             C---------------BCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT----TEEEEEECTTSSSE
T ss_pred             c---------------cCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC----CcceeEEcCCCCee
Confidence            0               0012233555666667877753  68999999999988877 6532    12235677765 67


Q ss_pred             EEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccC
Q 001295          625 LAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLA  704 (1106)
Q Consensus       625 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  704 (1106)
                      +++.+.||.+.+|+.....+.....  +.                                                   
T Consensus       166 ~~~~~~dg~~~~v~~~~~g~~~~~~--~~---------------------------------------------------  192 (361)
T 2oiz_A          166 FMTICGDGGLLTINLGEDGKVASQS--RS---------------------------------------------------  192 (361)
T ss_dssp             EEEEETTSSEEEEEECTTSSEEEEE--EC---------------------------------------------------
T ss_pred             EEEECCCCcEEEEEECCCCcEeeec--cc---------------------------------------------------
Confidence            8888999999999876421211000  00                                                   


Q ss_pred             CCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccc
Q 001295          705 DVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKAT  784 (1106)
Q Consensus       705 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~  784 (1106)
                                   ..+|+...                  .. ..+.+++++..++..+.++.+.++|+.......     
T Consensus       193 -------------~~~~~~~~------------------~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~-----  235 (361)
T 2oiz_A          193 -------------KQMFSVKD------------------DP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKV-----  235 (361)
T ss_dssp             -------------CCCSCTTT------------------SC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEE-----
T ss_pred             -------------cceEcCCC------------------Cc-eEEEecccCCEEEEEeCCCeEEEEEecCCCcee-----
Confidence                         00111100                  00 011123444455555566677777654211000     


Q ss_pred             cccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe------------CCeEEEEEcCCCceeeeecCCCC
Q 001295          785 ASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS------------GGKISLFNMMTFKTMATFMPPPP  852 (1106)
Q Consensus       785 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s------------dg~i~vwd~~~~~~~~~~~~~~~  852 (1106)
                          +..|............    .......++++|+++.+.++.            .++|.+||+.+++.+.++..+. 
T Consensus       236 ----~~~~~~~~~~~~~~~~----~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-  306 (361)
T 2oiz_A          236 ----DGPWSLLNDEDKAKNW----VPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-  306 (361)
T ss_dssp             ----EEEEESCCHHHHHTTC----EECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-
T ss_pred             ----cccccccCcccccccc----ccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-
Confidence                0001111100000000    011112378999988777653            2479999999999999998776 


Q ss_pred             CeeEEEEecCCCceEEEeeCCCcEEEEEeecc--eEEEEecCcccCeeEEEEecCCC
Q 001295          853 AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD--EVKSKLKGHSKRITGLAFSHALN  907 (1106)
Q Consensus       853 ~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~--~~~~~l~~h~~~V~~l~~s~d~~  907 (1106)
                       +.+++|+| |+++|++++. +.|.+||..++  +++..+..+......++++|||+
T Consensus       307 -p~~ia~sp-dg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          307 -ALSMTIDQ-QRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             -CCEEEEET-TTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             -eeEEEECC-CCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence             99999999 8888888886 99999999999  99999877778889999999986

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.68  E-value=4.6e-15  Score=163.08  Aligned_cols=251  Identities=13%  Similarity=0.073  Sum_probs=184.9

Q ss_pred             CCCeeEEEEecCCCEEEEEe-C------------------------CeEEEEEcCCCceeeeec-CCCCCeeEEEEecCC
Q 001295          810 EEAVPCFALSKNDSYVMSAS-G------------------------GKISLFNMMTFKTMATFM-PPPPAATFLAFHPQD  863 (1106)
Q Consensus       810 ~~~v~~l~~s~~~~~l~~~s-d------------------------g~i~vwd~~~~~~~~~~~-~~~~~v~~l~~s~~d  863 (1106)
                      -..+.+++++++|+++++.. +                        ++|.+||..+++.+..+. ++......+++++ +
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~  101 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D  101 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence            45689999999999998887 4                        379999999888876654 3445789999999 8


Q ss_pred             CceEEEeeCCCcEEEEEeecce-EEEEe---------cCcccCeeEEEEec-CCCEEEEEc-CCCcEEEEeCCCcccccc
Q 001295          864 NNIIAIGMDDSSIQIYNVRVDE-VKSKL---------KGHSKRITGLAFSH-ALNVLVSSG-ADSQLCVWSSDGWEKQKN  931 (1106)
Q Consensus       864 ~~~la~g~~dg~v~iwd~~~~~-~~~~l---------~~h~~~V~~l~~s~-d~~~l~s~s-~Dg~i~vwd~~~~~~~~~  931 (1106)
                      ++++++...++.|++||..... .+..+         .++.....+|+++| ++.++++.+ .++.|++|+... +... 
T Consensus       102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g-~~~~-  179 (329)
T 3fvz_A          102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG-KFVT-  179 (329)
T ss_dssp             SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS-CEEE-
T ss_pred             CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC-CEEE-
Confidence            8888888889999999975432 45555         34556789999999 788888886 689999999543 3211 


Q ss_pred             eeeccc-CCC---CCCCCCCceEEEcCC-CcEEEEE-eCCeEEEEecCCceEeeecccCCCCCCeeEEEECC------CC
Q 001295          932 RFLQIP-TGR---TPTAQSDTRVQFHQD-QIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSC------DS  999 (1106)
Q Consensus       932 ~~~~~~-~~~---~~~~~~i~~~~~s~d-g~~l~~~-~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~------d~  999 (1106)
                       .+... .+.   ......+..++++|+ +.++++. .++.|++||..+++.+..+....+...+.+++|+|      +|
T Consensus       180 -~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g  258 (329)
T 3fvz_A          180 -QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNG  258 (329)
T ss_dssp             -EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEEC
T ss_pred             -EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCC
Confidence             11100 000   001124688999999 6666663 67899999999899988887666778899999999      33


Q ss_pred             CEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCC
Q 001295         1000 QLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1072 (1106)
Q Consensus      1000 ~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~ 1072 (1106)
                      +..++...+.+|++||..+++.+..+...    .+   ..-.|..++++| ||+++++...++.|++|++...
T Consensus       259 ~~~v~~~~~~~v~~~~~~~g~~~~~~~~~----~~---~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          259 KPYFGDQEPVQGFVMNFSSGEIIDVFKPV----RK---HFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLTEK  323 (329)
T ss_dssp             CCCTTCSCCCCEEEEETTTCCEEEEECCS----SS---CCSSEEEEEECT-TSEEEEEESSSCCEEEEEEEEC
T ss_pred             CEEeccCCCcEEEEEEcCCCeEEEEEcCC----CC---ccCCeeEEEECC-CCCEEEEECCCCEEEEEeCCcc
Confidence            32223334458999999999998877511    11   113355899999 6888999999999999998753

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.68  E-value=1.6e-14  Score=158.77  Aligned_cols=250  Identities=12%  Similarity=0.119  Sum_probs=185.2

Q ss_pred             CCcEEEEEecCCCeEEEEEecc------------------------CcEEEEecCCcceeEEeeeeeeccCcCCcccccc
Q 001295          351 SSPMSMDFHPVQQTLLLVGTNV------------------------GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAA  406 (1106)
Q Consensus       351 ~~v~~~~~sp~g~~llatg~~d------------------------g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~  406 (1106)
                      ..|.+++++|+|+ ++++.+.+                        ++|.+||..+++.+..                  
T Consensus        24 ~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~------------------   84 (329)
T 3fvz_A           24 GQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS------------------   84 (329)
T ss_dssp             SCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE------------------
T ss_pred             CCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec------------------
Confidence            6799999999998 57777766                        4799999988876542                  


Q ss_pred             ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCc-eeeeeeee---------ccccCCeeEEEEcC-CCCceEEE
Q 001295          407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD-EVRQHLEI---------DAHVGGVNDIAFSH-PNKQLCVI  475 (1106)
Q Consensus       407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~-~~~~~~~l---------~~h~~~V~~~~~s~-d~~~~~l~  475 (1106)
                      .-.++-.....++++|+|+++++...++.|++||..+.. .+.   .+         .++......++|+| ++.  +++
T Consensus        85 ~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~---~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--lyv  159 (329)
T 3fvz_A           85 SGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLL---ILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VFV  159 (329)
T ss_dssp             ECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSE---EESBTTBCCCSTTCCSSEEEEEECTTTCC--EEE
T ss_pred             cCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEE---EecccCCCCCCccccCCCcEEEEeCCCCe--EEE
Confidence            112445578999999999988888889999999987542 222   23         34555789999999 676  677


Q ss_pred             Eec-CCCcEEEEeCCCCceeEEEecc----------CCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEee--
Q 001295          476 TCG-DDKTIKVWDATNGAKQYIFEGH----------EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE--  542 (1106)
Q Consensus       476 s~~-~d~~i~iwd~~~~~~~~~~~~h----------~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--  542 (1106)
                      +.+ .++.|++|| .+|+.+..+...          ......++++++. +.++++...++.|++||..+++....+.  
T Consensus       160 ~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~-g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~  237 (329)
T 3fvz_A          160 SDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHL-DQLCVADRENGRIQCFKTDTKEFVREIKHA  237 (329)
T ss_dssp             EECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTT-TEEEEEETTTTEEEEEETTTCCEEEEECCT
T ss_pred             EeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCC-CEEEEEECCCCEEEEEECCCCcEEEEEecc
Confidence            776 689999999 678877777432          2347888876432 5788888899999999998776666553  


Q ss_pred             CCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEcc-CCCCCCcCeEEEccC
Q 001295          543 APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA-DGGLPASPRIRFNKD  621 (1106)
Q Consensus       543 ~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~s~~  621 (1106)
                      .....+..++++| +.              .+..+++.+++...+..|++|+..+++.+..+.. ..+......++++|+
T Consensus       238 ~~~~~~~~~~~~p-g~--------------~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~d  302 (329)
T 3fvz_A          238 SFGRNVFAISYIP-GF--------------LFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASED  302 (329)
T ss_dssp             TTTTCEEEEEEET-TE--------------EEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTT
T ss_pred             ccCCCcceeeecC-CE--------------EEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCC
Confidence            2344667777777 32              1112333344445567999999999999988742 223446789999999


Q ss_pred             CCEEEEEeCCCcEEEEEccC
Q 001295          622 GCLLAVSTNDNGIKILATSD  641 (1106)
Q Consensus       622 ~~~l~~~~~dg~i~iwd~~~  641 (1106)
                      |.++++...++.|++|++..
T Consensus       303 G~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          303 GTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             SEEEEEESSSCCEEEEEEEE
T ss_pred             CCEEEEECCCCEEEEEeCCc
Confidence            98888888899999999864

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.67  E-value=1.2e-13  Score=160.88  Aligned_cols=341  Identities=12%  Similarity=0.105  Sum_probs=223.4

Q ss_pred             cCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEE
Q 001295          512 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIK  591 (1106)
Q Consensus       512 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~  591 (1106)
                      ++.+.++++...++.|.++|..+.+.+..+.... .+..+.++|||                     +++++++.++.|.
T Consensus       164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~-~p~~v~~SpDG---------------------r~lyv~~~dg~V~  221 (567)
T 1qks_A          164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASG---------------------RYLFVIGRDGKVN  221 (567)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTS---------------------CEEEEEETTSEEE
T ss_pred             CCCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC-CccceEECCCC---------------------CEEEEEcCCCeEE
Confidence            3344677888889999999999877666554322 23345555555                     5788888999999


Q ss_pred             EEECC--CcceeEEEccCCCCCCcCeEEEc----cCCCEEEEEeC-CCcEEEEEccCCchhhhhhcccccccccCCCCCC
Q 001295          592 FWDMD--SVQLLTSIDADGGLPASPRIRFN----KDGCLLAVSTN-DNGIKILATSDGIRLLRTFENLAYDASRTSENSK  664 (1106)
Q Consensus       592 iwd~~--~~~~~~~~~~~~~~~~v~~v~~s----~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  664 (1106)
                      +||+.  +++.+..+....   ....++|+    |||++++++.. ++.+.++|..+. +.++.+......         
T Consensus       222 viD~~~~t~~~v~~i~~G~---~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~-~~~~~i~~~~~~---------  288 (567)
T 1qks_A          222 MIDLWMKEPTTVAEIKIGS---EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL-EPKKIQSTRGMT---------  288 (567)
T ss_dssp             EEETTSSSCCEEEEEECCS---EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC-CEEEEEECCEEC---------
T ss_pred             EEECCCCCCcEeEEEecCC---CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCC-cEEEEEeccccc---------
Confidence            99996  788887776432   25689999    69998887765 589999997665 332222100000         


Q ss_pred             CCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCcccccc
Q 001295          665 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT  744 (1106)
Q Consensus       665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~  744 (1106)
                                                                       .++             ..        .....
T Consensus       289 -------------------------------------------------~~~-------------~~--------~~p~~  298 (567)
T 1qks_A          289 -------------------------------------------------YDE-------------QE--------YHPEP  298 (567)
T ss_dssp             -------------------------------------------------TTT-------------CC--------EESCC
T ss_pred             -------------------------------------------------ccc-------------cc--------ccCCC
Confidence                                                             000             00        00122


Q ss_pred             ceEEEEEcCCCceEEEee-cCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCC
Q 001295          745 KISRLIFTNSGNAILALA-SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS  823 (1106)
Q Consensus       745 ~i~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~  823 (1106)
                      ++..+.+++++..+++.. .+|.|.++|......                     +....+   ........+.|+|+++
T Consensus       299 rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~---------------------~~v~~i---~~~~~~~d~~~~pdgr  354 (567)
T 1qks_A          299 RVAAILASHYRPEFIVNVKETGKILLVDYTDLNN---------------------LKTTEI---SAERFLHDGGLDGSHR  354 (567)
T ss_dssp             CEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE---------------------EEEEEE---ECCSSEEEEEECTTSC
T ss_pred             ceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc---------------------ceeeee---eccccccCceECCCCC
Confidence            567788888766555444 458888887653110                     000000   1234566889999999


Q ss_pred             EEEEEe--CCeEEEEEcCCCceeeeecC-----CCCCeeEEEEecCCCceEEEee-CCCcEEEEEeec-------ceEEE
Q 001295          824 YVMSAS--GGKISLFNMMTFKTMATFMP-----PPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRV-------DEVKS  888 (1106)
Q Consensus       824 ~l~~~s--dg~i~vwd~~~~~~~~~~~~-----~~~~v~~l~~s~~d~~~la~g~-~dg~v~iwd~~~-------~~~~~  888 (1106)
                      +++++.  +++|.++|+.+++.+..+..     |.+.-..+ ++|+.+.+++++. .++.|.++|..+       .+.++
T Consensus       355 ~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~  433 (567)
T 1qks_A          355 YFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILD  433 (567)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEE
T ss_pred             EEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEE
Confidence            998877  68999999999988766543     33222222 5773355656553 468999999988       67888


Q ss_pred             EecCcccCeeEEEEecCCCEEEEEcC-------CCcEEEEeCCCccc---ccc-eeeccc--CCCCCCCCCCceEEEcCC
Q 001295          889 KLKGHSKRITGLAFSHALNVLVSSGA-------DSQLCVWSSDGWEK---QKN-RFLQIP--TGRTPTAQSDTRVQFHQD  955 (1106)
Q Consensus       889 ~l~~h~~~V~~l~~s~d~~~l~s~s~-------Dg~i~vwd~~~~~~---~~~-~~~~~~--~~~~~~~~~i~~~~~s~d  955 (1106)
                      ++......-..+..+||+++|.+...       .++|.|+|+.+.+.   ... ..+.+.  .+.......+..+.|+++
T Consensus       434 ~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  513 (567)
T 1qks_A          434 SFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKD  513 (567)
T ss_dssp             EEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTT
T ss_pred             EEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCC
Confidence            88765444355788999999988663       35899999987611   111 222210  011111136789999999


Q ss_pred             CcEEEEE-e-----CCeEEEEecCCceEeeecc
Q 001295          956 QIHFLVV-H-----ETQLAIFETTKLECVKQWV  982 (1106)
Q Consensus       956 g~~l~~~-~-----d~~v~i~d~~~~~~~~~~~  982 (1106)
                      |+++.++ .     ++.|.|+|.++++.+..+.
T Consensus       514 G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~  546 (567)
T 1qks_A          514 GTEVWFSVWNGKDQESALVVVDDKTLELKHVIK  546 (567)
T ss_dssp             SSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             CCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence            9998874 2     6899999999999988775

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.67  E-value=2.3e-15  Score=171.09  Aligned_cols=298  Identities=9%  Similarity=0.041  Sum_probs=185.5

Q ss_pred             CeEEEEEccCCCEEEEEeCC---CeEEEEEccCCceeeeeeeeccccCC-eeEEEEcCCCCceEEEEecCCCcEEEEeCC
Q 001295          414 SVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGG-VNDIAFSHPNKQLCVITCGDDKTIKVWDAT  489 (1106)
Q Consensus       414 ~V~~l~~spdg~~las~~~d---~~v~iwd~~~~~~~~~~~~l~~h~~~-V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~  489 (1106)
                      .+.+++|||||++|+.+...   ..|.+||+.+++...    +..+... ...+.|+|||+  .|+.++.++.|++||+.
T Consensus        37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~----l~~~~~~~~~~~~~spdg~--~l~~~~~~~~l~~~d~~  110 (396)
T 3c5m_A           37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ----LTEGKGDNTFGGFISTDER--AFFYVKNELNLMKVDLE  110 (396)
T ss_dssp             CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE----CCCSSCBCTTTCEECTTSS--EEEEEETTTEEEEEETT
T ss_pred             eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE----eecCCCCccccceECCCCC--EEEEEEcCCcEEEEECC
Confidence            37788999999999887543   468889998876543    3333333 34488999999  68888888899999999


Q ss_pred             CCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccce
Q 001295          490 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL  569 (1106)
Q Consensus       490 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i  569 (1106)
                      +++.......+..      |.  +++..|+..+.++...+|+.                 ...++|+++           
T Consensus       111 ~~~~~~~~~~~~~------~~--~~g~~l~~~~~~~~~~~~~~-----------------~~~~spdg~-----------  154 (396)
T 3c5m_A          111 TLEEQVIYTVDEE------WK--GYGTWVANSDCTKLVGIEIL-----------------KRDWQPLTS-----------  154 (396)
T ss_dssp             TCCEEEEEECCTT------EE--EEEEEEECTTSSEEEEEEEE-----------------GGGCCCCCS-----------
T ss_pred             CCCcEEEEecccc------cC--CCCCEEEeccCCcccccccc-----------------ccccCCCCc-----------
Confidence            8887665554443      22  23355665555555544421                 112334443           


Q ss_pred             eEEEEcCCCCEEEEE-----ECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEcc-CCCEEEEEeCCC------cEEEE
Q 001295          570 GVVQFDTTKNRFLAA-----GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDN------GIKIL  637 (1106)
Q Consensus       570 ~~~~~~~~~~~l~~~-----~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg------~i~iw  637 (1106)
                                .++..     ..+..|++||+.+++.......   ...+..+.|+| +++.|+..+.++      .|.+|
T Consensus       155 ----------~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~---~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~  221 (396)
T 3c5m_A          155 ----------WEKFAEFYHTNPTCRLIKVDIETGELEVIHQD---TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLV  221 (396)
T ss_dssp             ----------HHHHHHHHHTCCCEEEEEEETTTCCEEEEEEE---SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEE
T ss_pred             ----------ceeeeeeccCCCcceEEEEECCCCcEEeeccC---CcccccceECCCCCCEEEEEecCCCCCCCceEEEE
Confidence                      44432     3567899999998876655532   23577899999 888777766432      35555


Q ss_pred             EccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCc
Q 001295          638 ATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDK  717 (1106)
Q Consensus       638 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~  717 (1106)
                      ++.++. .                                                                        
T Consensus       222 d~~~~~-~------------------------------------------------------------------------  228 (396)
T 3c5m_A          222 NEDGSN-V------------------------------------------------------------------------  228 (396)
T ss_dssp             ETTSCC-C------------------------------------------------------------------------
T ss_pred             ECCCCc-e------------------------------------------------------------------------
Confidence            543320 0                                                                        


Q ss_pred             eeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecC-----ceEEEeeccccccCCCCccccccCcccc
Q 001295          718 SKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN-----AIHLLWKWQRTERNSSGKATASVAPQLW  792 (1106)
Q Consensus       718 i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~w  792 (1106)
                                     ..+..  ......+..++|+|+|+.|+.++.+     +.|++||+.                   
T Consensus       229 ---------------~~l~~--~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~-------------------  272 (396)
T 3c5m_A          229 ---------------RKIKE--HAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPE-------------------  272 (396)
T ss_dssp             ---------------EESSC--CCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTT-------------------
T ss_pred             ---------------eEeec--cCCCccccceEECCCCCEEEEEecCCCCccceEEEEECC-------------------
Confidence                           00000  0012356788999999988777654     347777654                   


Q ss_pred             CCCCCCccccccCCCCCCCCeeEEEEec-CCCEEEEEe-----------------CCeEEEEEcCCCceeeeecCCCC--
Q 001295          793 QPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSYVMSAS-----------------GGKISLFNMMTFKTMATFMPPPP--  852 (1106)
Q Consensus       793 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~s-----------------dg~i~vwd~~~~~~~~~~~~~~~--  852 (1106)
                         ++.......    .. ... +.|+| ||++++++.                 +..|.+||+.+++.. .+..+..  
T Consensus       273 ---~g~~~~l~~----~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~  342 (396)
T 3c5m_A          273 ---TLENEEVMV----MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSW  342 (396)
T ss_dssp             ---TCCEEEEEE----CC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCC
T ss_pred             ---CCCeEEeee----CC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCcc
Confidence               333221100    11 123 88999 999888753                 367999999887653 3433433  


Q ss_pred             ---------CeeEEEEecCCCceEEEeeC-CCcEEEEE--eecceE
Q 001295          853 ---------AATFLAFHPQDNNIIAIGMD-DSSIQIYN--VRVDEV  886 (1106)
Q Consensus       853 ---------~v~~l~~s~~d~~~la~g~~-dg~v~iwd--~~~~~~  886 (1106)
                               .+..++|+| |++.|+.++. ++...||.  +.+++.
T Consensus       343 ~~~~~~~~~~~~~~~~s~-dg~~l~~~s~~~~~~~l~~~~~~~~~~  387 (396)
T 3c5m_A          343 DVLDGDRQITHPHPSFTP-NDDGVLFTSDFEGVPAIYIADVPESYK  387 (396)
T ss_dssp             CCBTTBSSTTCCCCEECT-TSSEEEEEECTTSSCEEEEEECCTTCC
T ss_pred             ccccccccCCCCCceEcc-CCCeEEEEecCCCCceEEEEEEccccc
Confidence                     256789999 7877766654 56555554  444443

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.67  E-value=2.1e-14  Score=154.69  Aligned_cols=243  Identities=11%  Similarity=0.122  Sum_probs=177.3

Q ss_pred             CCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeec------CCCCCeeEEEEecCCCceEEEeeC-CCcEEEEE
Q 001295          809 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM------PPPPAATFLAFHPQDNNIIAIGMD-DSSIQIYN  880 (1106)
Q Consensus       809 ~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~------~~~~~v~~l~~s~~d~~~la~g~~-dg~v~iwd  880 (1106)
                      +-..+.+++++++++++++.. ++.|.+||.. ++.+..+.      ++...+..+++++.+++++++... ++.|++||
T Consensus        28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d  106 (286)
T 1q7f_A           28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN  106 (286)
T ss_dssp             CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred             ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence            456689999999999888776 7999999987 55555553      234568899995327777776643 88999999


Q ss_pred             eecceEEEEec-CcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEE
Q 001295          881 VRVDEVKSKLK-GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF  959 (1106)
Q Consensus       881 ~~~~~~~~~l~-~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l  959 (1106)
                       .+++.+..+. .+...+.+++++++|+++++...++.|.+|+... +...  .+.. .+.   ...+..++++++|+++
T Consensus       107 -~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~--~~~~-~~~---~~~p~~i~~~~~g~l~  178 (286)
T 1q7f_A          107 -QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLH--KFGC-SKH---LEFPNGVVVNDKQEIF  178 (286)
T ss_dssp             -TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEE--EEEC-TTT---CSSEEEEEECSSSEEE
T ss_pred             -CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-CEEE--EeCC-CCc---cCCcEEEEECCCCCEE
Confidence             5677776664 3456789999999999888888889999999654 2111  1111 111   1356899999999977


Q ss_pred             EEE-eCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCC-eEEEEEcCCceeEEeeCCCcccCCCCCC
Q 001295          960 LVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-TVCVFSAANLKLRCRINPSAYLPAGVSS 1037 (1106)
Q Consensus       960 ~~~-~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 1037 (1106)
                      ++. .++.|++||.. ++.+..+...++...+..|+++++|+++++...++ .|++||. +++.+..+..    .    .
T Consensus       179 v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~----~----~  248 (286)
T 1q7f_A          179 ISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALES----K----V  248 (286)
T ss_dssp             EEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEE----S----S
T ss_pred             EEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcc----c----C
Confidence            774 68899999974 55556655334446789999999999888887776 9999995 5666665541    1    1


Q ss_pred             CCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCC
Q 001295         1038 SNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1072 (1106)
Q Consensus      1038 ~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~ 1072 (1106)
                      ....+..++++| ||+++++ +.|++|++|++...
T Consensus       249 ~~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          249 KHAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             CCSCEEEEEEET-TTEEEEE-ETTTEEEEEECSCC
T ss_pred             CCCcceeEEECC-CCcEEEE-CCCCeEEEEEcccc
Confidence            112355899999 6777776 67999999998654

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.67  E-value=1.4e-13  Score=160.30  Aligned_cols=330  Identities=12%  Similarity=0.117  Sum_probs=218.7

Q ss_pred             EEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEcc--CCchhhhhhcccccccc
Q 001295          580 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS--DGIRLLRTFENLAYDAS  657 (1106)
Q Consensus       580 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~  657 (1106)
                      .+++...++.|.++|..+++.+..+....   .+..+.|+|||+++++++.++.|.+||+.  ++ +.+..+.       
T Consensus       169 ~~V~~~~~~~V~viD~~t~~v~~~i~~g~---~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~-~~v~~i~-------  237 (567)
T 1qks_A          169 FSVTLRDAGQIALIDGSTYEIKTVLDTGY---AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP-TTVAEIK-------  237 (567)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEECSS---CEEEEEECTTSCEEEEEETTSEEEEEETTSSSC-CEEEEEE-------
T ss_pred             EEEEeCCCCeEEEEECCCCeEEEEEeCCC---CccceEECCCCCEEEEEcCCCeEEEEECCCCCC-cEeEEEe-------
Confidence            46667789999999999999998886432   35689999999999999999999999985  33 1111110       


Q ss_pred             cCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceeccc
Q 001295          658 RTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL  737 (1106)
Q Consensus       658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~  737 (1106)
                                                                                                      
T Consensus       238 --------------------------------------------------------------------------------  237 (567)
T 1qks_A          238 --------------------------------------------------------------------------------  237 (567)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CccccccceEEEEEc----CCCceEEEeecC-ceEEEeeccccccCCCCccccccCccccCCCCCCccccccCC-CCC-C
Q 001295          738 PENLRATKISRLIFT----NSGNAILALASN-AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD-SNP-E  810 (1106)
Q Consensus       738 ~~~~~~~~i~~~~~s----~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~-~~~-~  810 (1106)
                          .......++|+    |||++++++... +.+.++|..+.+.      +...       ..+...   ..+ ..| .
T Consensus       238 ----~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~------~~~i-------~~~~~~---~~~~~~~p~  297 (567)
T 1qks_A          238 ----IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP------KKIQ-------STRGMT---YDEQEYHPE  297 (567)
T ss_dssp             ----CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE------EEEE-------ECCEEC---TTTCCEESC
T ss_pred             ----cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcE------EEEE-------eccccc---cccccccCC
Confidence                11234688999    699988887774 8999988543211      0000       000000   000 001 2


Q ss_pred             CCeeEEEEecCCCEEEEEe--CCeEEEEEcCCCceee--eecCCCCCeeEEEEecCCCceEEEee-CCCcEEEEEeecce
Q 001295          811 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRVDE  885 (1106)
Q Consensus       811 ~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~--~~~~~~~~v~~l~~s~~d~~~la~g~-~dg~v~iwd~~~~~  885 (1106)
                      ..+..+..++++..++...  .|.|.++|..+.+.+.  .+. .......+.|+| ++++++++. .++.|.++|+.+++
T Consensus       298 ~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t~k  375 (567)
T 1qks_A          298 PRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEGK  375 (567)
T ss_dssp             CCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTTE
T ss_pred             CceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceECC-CCCEEEEEeCCCCeEEEEECCCCc
Confidence            3678899999887666654  5999999998754322  222 234567889999 777766554 67899999999999


Q ss_pred             EEEEecC-----cccCeeEEEEecCCCEE-EEEc-CCCcEEEEeCCCcccc--cceeecccCCCCCCCCCCceEEEcCCC
Q 001295          886 VKSKLKG-----HSKRITGLAFSHALNVL-VSSG-ADSQLCVWSSDGWEKQ--KNRFLQIPTGRTPTAQSDTRVQFHQDQ  956 (1106)
Q Consensus       886 ~~~~l~~-----h~~~V~~l~~s~d~~~l-~s~s-~Dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~s~dg  956 (1106)
                      ++..+..     |.+.-..+ ++|++..+ +++. .+++|.++|..+.+..  ....++......   ..-..+.++|++
T Consensus       376 l~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g---~g~~~i~~~p~~  451 (567)
T 1qks_A          376 LVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALG---GGSLFIKTHPNS  451 (567)
T ss_dssp             EEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC---SCCCCEECCTTC
T ss_pred             EEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCC---CCCEEEEeCCCC
Confidence            8776643     43222222 57875544 4443 5689999999873211  111222222211   123568899999


Q ss_pred             cEEEEEe--------CCeEEEEecCCc-----e-Eeeecc------cCCCCCCeeEEEECCCCCEEEEEE-----cCCeE
Q 001295          957 IHFLVVH--------ETQLAIFETTKL-----E-CVKQWV------PRESSAPITHATFSCDSQLVYACF-----LDATV 1011 (1106)
Q Consensus       957 ~~l~~~~--------d~~v~i~d~~~~-----~-~~~~~~------~~~h~~~v~~l~~s~d~~~l~t~s-----~Dg~i 1011 (1106)
                      +++.+..        ..+|.++|+.+.     . ....+.      .......+..+.|++||+++..+.     .++.|
T Consensus       452 ~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i  531 (567)
T 1qks_A          452 QYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESAL  531 (567)
T ss_dssp             SEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEE
T ss_pred             CeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcE
Confidence            9999854        358999999877     2 111221      111245789999999999987663     37999


Q ss_pred             EEEEcCCceeEEeeC
Q 001295         1012 CVFSAANLKLRCRIN 1026 (1106)
Q Consensus      1012 ~vwd~~~~~~~~~~~ 1026 (1106)
                      .|+|..|++++.++.
T Consensus       532 ~v~D~~t~~~~~~i~  546 (567)
T 1qks_A          532 VVVDDKTLELKHVIK  546 (567)
T ss_dssp             EEEETTTTEEEEEEC
T ss_pred             EEEECCCceEEEEeC
Confidence            999999999998887

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.66  E-value=3.2e-15  Score=169.90  Aligned_cols=238  Identities=13%  Similarity=-0.006  Sum_probs=152.7

Q ss_pred             cEEEEEecCCCeEEEEEeccC--cEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEE
Q 001295          353 PMSMDFHPVQQTLLLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA  430 (1106)
Q Consensus       353 v~~~~~sp~g~~llatg~~dg--~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~  430 (1106)
                      +.+++|||||++|+++...++  .|.+||+.+++....                   ..++......+.|||||++|+.+
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l-------------------~~~~~~~~~~~~~spdg~~l~~~   98 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQL-------------------TEGKGDNTFGGFISTDERAFFYV   98 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEEC-------------------CCSSCBCTTTCEECTTSSEEEEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEe-------------------ecCCCCccccceECCCCCEEEEE
Confidence            788999999998555554433  688889888765431                   12222233347899999999999


Q ss_pred             eCCCeEEEEEccCCceeeeeeeeccccCCeeE-------------------EEEcCCCCceEEEEe-----cCCCcEEEE
Q 001295          431 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVND-------------------IAFSHPNKQLCVITC-----GDDKTIKVW  486 (1106)
Q Consensus       431 ~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~-------------------~~~s~d~~~~~l~s~-----~~d~~i~iw  486 (1106)
                      +.++.|.+||+.+++... +  ...+......                   +.|+|+++.  ++..     ..+..|++|
T Consensus        99 ~~~~~l~~~d~~~~~~~~-~--~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~--~~~~~~~~~~~~~~l~~~  173 (396)
T 3c5m_A           99 KNELNLMKVDLETLEEQV-I--YTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSW--EKFAEFYHTNPTCRLIKV  173 (396)
T ss_dssp             ETTTEEEEEETTTCCEEE-E--EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH--HHHHHHHHTCCCEEEEEE
T ss_pred             EcCCcEEEEECCCCCcEE-E--EecccccCCCCCEEEeccCCccccccccccccCCCCcc--eeeeeeccCCCcceEEEE
Confidence            999999999999887543 1  2223332222                   356788874  3332     466789999


Q ss_pred             eCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecC------CeEEEEeCCCCCceeEeeCC-CCeeEEEEEecCCCe
Q 001295          487 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD------GKIKAWLYDNLGSRVDYEAP-GRWCTTMAYSADGTR  559 (1106)
Q Consensus       487 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~  559 (1106)
                      |+.+++..... .+...+..+.|++. ++..|+..+.+      ..|.+||+............ ...+..+.|+|||+ 
T Consensus       174 d~~~g~~~~~~-~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~-  250 (396)
T 3c5m_A          174 DIETGELEVIH-QDTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGS-  250 (396)
T ss_dssp             ETTTCCEEEEE-EESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSS-
T ss_pred             ECCCCcEEeec-cCCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCC-
Confidence            99988765544 46777888888662 33556555443      46888887654322221111 12345555555554 


Q ss_pred             EEEeeeccceeEEEEcCCCCEEEEEECC-----CeEEEEECCCcceeEEEccCCCCCCcCeEEEcc-CCCEEEEEeC---
Q 001295          560 TYQGFRKRSLGVVQFDTTKNRFLAAGDD-----FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTN---  630 (1106)
Q Consensus       560 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~---  630 (1106)
                                          +|+.++.+     +.|++||+.+++.........    .. +.|+| ||+++++++.   
T Consensus       251 --------------------~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~----~~-~~~s~~dg~~l~~~~~~~p  305 (396)
T 3c5m_A          251 --------------------AMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP----CS-HLMSNFDGSLMVGDGCDAP  305 (396)
T ss_dssp             --------------------CEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS----EE-EEEECSSSSEEEEEECCC-
T ss_pred             --------------------EEEEEecCCCCccceEEEEECCCCCeEEeeeCCC----CC-CCccCCCCceEEEecCCcc
Confidence                                55554432     459999998887654433221    22 89999 9998887652   


Q ss_pred             -------------CCcEEEEEccCC
Q 001295          631 -------------DNGIKILATSDG  642 (1106)
Q Consensus       631 -------------dg~i~iwd~~~~  642 (1106)
                                   ++.|++||+.++
T Consensus       306 ~~~~~~~~~~~~~~~~i~~~d~~~~  330 (396)
T 3c5m_A          306 VDVADADSYNIENDPFLYVLNTKAK  330 (396)
T ss_dssp             ---------CCCCCCEEEEEETTTT
T ss_pred             eeeccccccccCCCCcEEEEecccC
Confidence                         356788877655

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.65  E-value=8.4e-15  Score=178.79  Aligned_cols=335  Identities=9%  Similarity=0.014  Sum_probs=199.4

Q ss_pred             eeccccCCeeEEEEcCCCCceEEEEe--cCCCcEEEEeCCCCceeEEEeccCCCeE---------EEeccccCCceE-EE
Q 001295          452 EIDAHVGGVNDIAFSHPNKQLCVITC--GDDKTIKVWDATNGAKQYIFEGHEAPVY---------SVCPHHKENIQF-IF  519 (1106)
Q Consensus       452 ~l~~h~~~V~~~~~s~d~~~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~h~~~v~---------~~~~~~~~~~~~-l~  519 (1106)
                      .+.+|...|..++|++++-  ++++.  +.++...||....+.....+..|...+.         ...|+.++||+. |+
T Consensus        18 ~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la   95 (662)
T 3azo_A           18 LVASRSGRPACVGAVGDEV--WWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV   95 (662)
T ss_dssp             HHHHTCSCCEEEEEETTEE--EEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred             HHhhcCCccceeEEcCCeE--EEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEE
Confidence            3667999999999997754  67777  6788999999765666777777776655         555543466676 65


Q ss_pred             EEec-CCeEEEEeCC--CCCceeEeeC-----CCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECC----
Q 001295          520 STAL-DGKIKAWLYD--NLGSRVDYEA-----PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD----  587 (1106)
Q Consensus       520 s~~~-dg~i~iwd~~--~~~~~~~~~~-----~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----  587 (1106)
                      .++. +..|.+|++.  .......+..     +...+..++|+|||+                     .|+.++.+    
T Consensus        96 ~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~---------------------~l~~~~~~~~~~  154 (662)
T 3azo_A           96 FTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERG---------------------EVWCMAEEFTGE  154 (662)
T ss_dssp             EEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTT---------------------EEEEEEEEECSS
T ss_pred             EEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCC---------------------EEEEEEecccCC
Confidence            5543 5667666665  2033333333     333455555555555                     67766655    


Q ss_pred             ------CeEEEEECCC------cceeEEEc-cCCCCCCcCeEEEccCCCEEEEEeCCC--------cEEEEEcc-CCchh
Q 001295          588 ------FSIKFWDMDS------VQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDN--------GIKILATS-DGIRL  645 (1106)
Q Consensus       588 ------~~i~iwd~~~------~~~~~~~~-~~~~~~~v~~v~~s~~~~~l~~~~~dg--------~i~iwd~~-~~~~~  645 (1106)
                            ..|++||+.+      ++.. .+. .+  ...+..++|+|||++|+.++.++        .|++||+. ++. .
T Consensus       155 ~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~--~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~-~  230 (662)
T 3azo_A          155 GPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDA--HRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGR-F  230 (662)
T ss_dssp             STTCEEEEEEEEETTSTTTTCGGGSE-ESSCSC--SSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSC-E
T ss_pred             CCCCceeEEEEEECCCCccccCCcee-EEEecC--CCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCc-c
Confidence                  5899999988      5543 333 22  23577899999999999887543        57777765 230 0


Q ss_pred             hhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCC
Q 001295          646 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE  725 (1106)
Q Consensus       646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~  725 (1106)
                                                                                                      
T Consensus       231 --------------------------------------------------------------------------------  230 (662)
T 3azo_A          231 --------------------------------------------------------------------------------  230 (662)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccC
Q 001295          726 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT  805 (1106)
Q Consensus       726 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  805 (1106)
                          .....+.   ..+...+..++|+|||+.++++..++...||.++                    ..++..... ..
T Consensus       231 ----~~~~~l~---~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~--------------------~~~~~~~~l-~~  282 (662)
T 3azo_A          231 ----ADTRTLL---GGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVD--------------------PATGAATQL-CR  282 (662)
T ss_dssp             ----EEEEEEE---EETTBCEEEEEECTTSCEEEEECTTSSCEEEEEC--------------------TTTCCEEES-SC
T ss_pred             ----cccEEeC---CCCCceEcceEECCCCeEEEEECCCCCeEEEEEE--------------------CCCCceeec-cc
Confidence                0000000   1134667889999999966666667744444332                    111211110 00


Q ss_pred             CC------CCCCCeeEEEEecCCCEEEEEeCCeEEEE--EcCCCceeeeecCCCCCeeEE-EEecCCCceEEEeeCCC--
Q 001295          806 DS------NPEEAVPCFALSKNDSYVMSASGGKISLF--NMMTFKTMATFMPPPPAATFL-AFHPQDNNIIAIGMDDS--  874 (1106)
Q Consensus       806 ~~------~~~~~v~~l~~s~~~~~l~~~sdg~i~vw--d~~~~~~~~~~~~~~~~v~~l-~~s~~d~~~la~g~~dg--  874 (1106)
                      ..      .-.-.+..++|++++++++++..+.++||  |..+++ +..+..+...+..+ +++. +..++++++.+.  
T Consensus       283 ~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~  360 (662)
T 3azo_A          283 REEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESGE-LVDAAGPWTEWAATLTVSG-TRAVGVAASPRTAY  360 (662)
T ss_dssp             CSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTTE-EEECCSSCCEEEEEEEEET-TEEEEEEEETTEEE
T ss_pred             ccccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCCCc-EEEecCCCCeEEEEEecCC-CEEEEEEcCCCCCC
Confidence            00      00111457899999999888876777888  555554 67777777777777 5544 333444455554  


Q ss_pred             cEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeC
Q 001295          875 SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS  923 (1106)
Q Consensus       875 ~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~  923 (1106)
                      .|++||+.+++.......|...+....+++.....+.+..+..|..|-+
T Consensus       361 ~i~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~~~  409 (662)
T 3azo_A          361 EVVELDTVTGRARTIGARHTDPVDPAYYPEPQIRTFTAPDGREIHAHIY  409 (662)
T ss_dssp             EEEEEETTTCCEEEEESCCCCSSCGGGSCCCEEEEEECTTSCEEEEEEE
T ss_pred             EEEEEECCCCceEEeecCCcccCCccccCcceEEEEEcCCCCEEEEEEE
Confidence            4555566677655444455444444444444444444434445666644

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.64  E-value=1.7e-14  Score=176.06  Aligned_cols=243  Identities=9%  Similarity=-0.030  Sum_probs=159.6

Q ss_pred             eccCCCCcEEEEEecCCCeEEEEE--eccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeE-------
Q 001295          346 TLNQGSSPMSMDFHPVQQTLLLVG--TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN-------  416 (1106)
Q Consensus       346 ~~~h~~~v~~~~~sp~g~~llatg--~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~-------  416 (1106)
                      ...|...|..++|++++-+ ++++  +.++...||....+.....                   +..|...|.       
T Consensus        19 ~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~-------------------l~~~~~~~~~~~~~~~   78 (662)
T 3azo_A           19 VASRSGRPACVGAVGDEVW-WVAPRPAEAGRATLVRRRADGAEES-------------------ALPAPWNVRNRVFEYS   78 (662)
T ss_dssp             HHHTCSCCEEEEEETTEEE-EEEEETTTTTEEEEEEECTTSCEEE-------------------SSCTTCCBCCCGGGTC
T ss_pred             HhhcCCccceeEEcCCeEE-EEecCcccCCcEEEEEECCCCCcce-------------------eCCCCccccccccccC
Confidence            4458999999999988653 5555  4478899999644433321                   344544554       


Q ss_pred             --EEEEc--cCCCE-EEEEeC-CCeEEEEEcc--C-Cceeeeeeeecc-----ccCCeeEEEEcCCCCceEEEEecCC--
Q 001295          417 --RVIWS--PDGSL-FGVAYS-RHIVQIYSYH--G-GDEVRQHLEIDA-----HVGGVNDIAFSHPNKQLCVITCGDD--  480 (1106)
Q Consensus       417 --~l~~s--pdg~~-las~~~-d~~v~iwd~~--~-~~~~~~~~~l~~-----h~~~V~~~~~s~d~~~~~l~s~~~d--  480 (1106)
                        ...|+  |||++ |+.++. +..|.+|++.  + ++. .   .+..     |...+.+++|+|||+  .|++++.|  
T Consensus        79 ~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~-~---~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~~~  152 (662)
T 3azo_A           79 GFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVP-R---PLTPVSAVGGGLRWADPVLLPERG--EVWCMAEEFT  152 (662)
T ss_dssp             CCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCC-E---ECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEEEC
T ss_pred             CccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCC-E---eccCCccCCCCccccCcEECCCCC--EEEEEEeccc
Confidence              55565  99999 877654 4566666665  3 442 2   2444     677899999999999  67766665  


Q ss_pred             --------CcEEEEeCCC------CceeEEEe-ccCCCeEEEeccccCCceEEEEEecC--------CeEEEEeCC-CCC
Q 001295          481 --------KTIKVWDATN------GAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALD--------GKIKAWLYD-NLG  536 (1106)
Q Consensus       481 --------~~i~iwd~~~------~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~-~~~  536 (1106)
                              ..|++||+.+      ++ ...+. .+...+..++|+  +||++|+.++.+        ..|.+||+. ++.
T Consensus       153 ~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~S--pDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~  229 (662)
T 3azo_A          153 GEGPSDVRRFLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRLS--PDGRQAVWLAWDHPRMPWEGTELKTARVTEDGR  229 (662)
T ss_dssp             SSSTTCEEEEEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEEC--TTSSEEEEEEECTTCCTTTCEEEEEEEECTTSC
T ss_pred             CCCCCCceeEEEEEECCCCccccCCc-eeEEEecCCCcccCceEC--CCCCEEEEEECCCCCCCCCCcEEEEEEECCCCc
Confidence                    5899999987      44 45555 566677777775  556788877755        379999988 331


Q ss_pred             --ceeEe-eCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCC--eEEEEECCCcceeEEEccCCCC-
Q 001295          537 --SRVDY-EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF--SIKFWDMDSVQLLTSIDADGGL-  610 (1106)
Q Consensus       537 --~~~~~-~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~-  610 (1106)
                        ....+ ..+...+.                     .+.|+|+|++++++..++  .|++||+.+++.......+... 
T Consensus       230 ~~~~~~l~~~~~~~~~---------------------~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~  288 (662)
T 3azo_A          230 FADTRTLLGGPEEAIA---------------------QAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFA  288 (662)
T ss_dssp             EEEEEEEEEETTBCEE---------------------EEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSS
T ss_pred             ccccEEeCCCCCceEc---------------------ceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccccccccc
Confidence              22222 22233344                     445555555666777777  6777777677655443322211 


Q ss_pred             -----CCcCeEEEccCCCEEEEEeCCCcEEEEEc
Q 001295          611 -----PASPRIRFNKDGCLLAVSTNDNGIKILAT  639 (1106)
Q Consensus       611 -----~~v~~v~~s~~~~~l~~~~~dg~i~iwd~  639 (1106)
                           ..+.+++|+++++++++++. +.+++|.+
T Consensus       289 ~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~  321 (662)
T 3azo_A          289 GPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL  321 (662)
T ss_dssp             CCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred             CccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence                 01467889999999999888 88888854

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.64  E-value=1.7e-13  Score=147.55  Aligned_cols=249  Identities=14%  Similarity=0.167  Sum_probs=172.6

Q ss_pred             CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEE-ccCCCEE
Q 001295          349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW-SPDGSLF  427 (1106)
Q Consensus       349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~-spdg~~l  427 (1106)
                      +-..+.+++++++|+ ++++...++.|.+||.. ++.+..  +.   ..        ....+|...+.++++ .++++++
T Consensus        28 ~~~~p~~v~~~~~g~-l~v~~~~~~~i~~~d~~-g~~~~~--~~---~~--------~~~~~~~~~p~~i~~~~~~g~l~   92 (286)
T 1q7f_A           28 QFTEPSGVAVNAQND-IIVADTNNHRIQIFDKE-GRFKFQ--FG---EC--------GKRDSQLLYPNRVAVVRNSGDII   92 (286)
T ss_dssp             CBSCEEEEEECTTCC-EEEEEGGGTEEEEECTT-SCEEEE--EC---CB--------SSSTTCBSSEEEEEEETTTTEEE
T ss_pred             ccCCCceEEECCCCC-EEEEECCCCEEEEECCC-CcEEEE--ec---cc--------CCCcccccCceEEEEEcCCCeEE
Confidence            446789999999998 68888888999999987 444332  10   00        001245567899999 5777777


Q ss_pred             EEEeC-CCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEe--ccCCCe
Q 001295          428 GVAYS-RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE--GHEAPV  504 (1106)
Q Consensus       428 as~~~-d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~h~~~v  504 (1106)
                      ++... ++.|.+|| .+++.+..+  -..+...+.+++++++|+  ++++...++.|.+||. +++.+..+.  ++...+
T Consensus        93 v~~~~~~~~i~~~d-~~g~~~~~~--~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p  166 (286)
T 1q7f_A           93 VTERSPTHQIQIYN-QYGQFVRKF--GATILQHPRGVTVDNKGR--IIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFP  166 (286)
T ss_dssp             EEECGGGCEEEEEC-TTSCEEEEE--CTTTCSCEEEEEECTTSC--EEEEETTTTEEEEECT-TSCEEEEEECTTTCSSE
T ss_pred             EEcCCCCCEEEEEC-CCCcEEEEe--cCccCCCceEEEEeCCCC--EEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCc
Confidence            76643 78999999 455544421  123456789999999998  7888888899999995 566666664  345668


Q ss_pred             EEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEE
Q 001295          505 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  584 (1106)
Q Consensus       505 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  584 (1106)
                      ..+++++  ++.++++...++.|++||... .....+.....                   ......++++++|+.+++.
T Consensus       167 ~~i~~~~--~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~g~-------------------~~~p~~i~~d~~G~l~v~~  224 (286)
T 1q7f_A          167 NGVVVND--KQEIFISDNRAHCVKVFNYEG-QYLRQIGGEGI-------------------TNYPIGVGINSNGEILIAD  224 (286)
T ss_dssp             EEEEECS--SSEEEEEEGGGTEEEEEETTC-CEEEEESCTTT-------------------SCSEEEEEECTTCCEEEEE
T ss_pred             EEEEECC--CCCEEEEECCCCEEEEEcCCC-CEEEEEccCCc-------------------cCCCcEEEECCCCCEEEEe
Confidence            8888754  557888888899999999743 33333322210                   0123345555556567777


Q ss_pred             ECCC-eEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295          585 GDDF-SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       585 ~~d~-~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                      ..++ .|.+|+. +++.+..+..+.....+.+++++|+|+++++ +.++.|++|+....
T Consensus       225 ~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          225 NHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             CSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             CCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence            6775 9999995 5677777765543334668999999987777 67899999987543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.63  E-value=1.8e-10  Score=142.96  Aligned_cols=545  Identities=10%  Similarity=0.079  Sum_probs=311.1

Q ss_pred             CCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEE
Q 001295          350 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV  429 (1106)
Q Consensus       350 ~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las  429 (1106)
                      ...|.++...++|.. . .|+. +-+..||..+++....   .   ..          .......|.++...++|.+.+.
T Consensus        87 ~n~I~~i~~d~~g~l-W-igT~-~Gl~~yd~~~~~f~~~---~---~~----------~~~~~~~i~~i~~d~~g~lwi~  147 (795)
T 4a2l_A           87 NDISRIVKTDSQGRV-W-IGTR-DGLSRYDEEKDIFQNF---F---YE----------KNGKHLQVNGIEEISPEQLLIS  147 (795)
T ss_dssp             CSCEEEEEECTTSCE-E-EEES-SCEEEEETTTTEEEEE---C---CE----------ETTEECCCCEEEEEETTEEEEE
T ss_pred             ccceeEEEECCCCCE-E-EEeC-CchheeCCCCCeEEec---c---cc----------ccCCCceEEEEEECCCCCEEEE
Confidence            467999999999983 3 3454 4589999876643221   0   00          0000011889998888876664


Q ss_pred             EeCCCeEEEEEccCCceeeeeeeeccc-cCC-eeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEE-eccCCCeEE
Q 001295          430 AYSRHIVQIYSYHGGDEVRQHLEIDAH-VGG-VNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYS  506 (1106)
Q Consensus       430 ~~~d~~v~iwd~~~~~~~~~~~~l~~h-~~~-V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~  506 (1106)
                      . . +-|..||..+++... .  ..++ ... |.++...+++.  +.+ +..++-|..||..+++..... ..+...|.+
T Consensus       148 t-~-~gl~~~~~~~~~~~~-~--~~~~~~~~~i~~i~~d~~g~--lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~  219 (795)
T 4a2l_A          148 T-P-EGLIMFDIKESKFID-D--SFSTAMHKTIASTLYRQGDQ--IYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQA  219 (795)
T ss_dssp             E-T-TEEEEEETTTTEEEC-S--SSCHHHHTCCEEEEEEETTE--EEE-EESSSCEEEEETTTCCEEECC----CCCEEE
T ss_pred             E-C-CceEEEECCCCEEEe-c--cCCCCCCcceEEEEECCCCC--EEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEE
Confidence            4 4 448899987754322 1  0011 123 88888888886  444 555555889998777643321 123456777


Q ss_pred             EeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeC--------CCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCC
Q 001295          507 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA--------PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK  578 (1106)
Q Consensus       507 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~  578 (1106)
                      +..  +.++. +..|+.++-+..||..+.... .+..        ....|.++.                     ..++|
T Consensus       220 i~~--d~~g~-lwigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~---------------------~d~~g  274 (795)
T 4a2l_A          220 ILQ--QSPTR-IWVATEGAGLFLINPKTKEIK-NYLHSPSNPKSISSNYIRSLA---------------------MDSQN  274 (795)
T ss_dssp             EEE--EETTE-EEEEEBSSCEEEEETTTTEEE-EECCCTTCTTSCSCSBEEEEE---------------------ECTTS
T ss_pred             EEE--cCCCC-EEEEECCCCeEEEeCCCCeEE-EeecCCCCccccCCCeEEEEE---------------------EcCCC
Confidence            774  33444 555555544888887653322 1211        122344444                     44444


Q ss_pred             CEEEEEECCCeEEEEECCCcceeEEEccC-----CCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccc
Q 001295          579 NRFLAAGDDFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA  653 (1106)
Q Consensus       579 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  653 (1106)
                      . +..|+.+ -|.+||..+++........     -....|.++...++|.+. +|+.++.|..|+..++.  +..+..  
T Consensus       275 ~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~--~~~~~~--  347 (795)
T 4a2l_A          275 R-LWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMW-LGTYFGGLNYYHPIRNR--FKNIRN--  347 (795)
T ss_dssp             C-EEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEE-EEESSSCEEEECGGGGS--SEEECC--
T ss_pred             C-EEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEE-EEECCCCeEEeCCCccc--ceEEcC--
Confidence            4 4555555 5889998877654332211     012457888888888755 56777788888754330  110000  


Q ss_pred             cccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccce
Q 001295          654 YDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCR  733 (1106)
Q Consensus       654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~  733 (1106)
                                                                                            ..    .   
T Consensus       348 ----------------------------------------------------------------------~~----~---  350 (795)
T 4a2l_A          348 ----------------------------------------------------------------------IP----Y---  350 (795)
T ss_dssp             ----------------------------------------------------------------------CT----T---
T ss_pred             ----------------------------------------------------------------------CC----C---
Confidence                                                                                  00    0   


Q ss_pred             ecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCe
Q 001295          734 SLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAV  813 (1106)
Q Consensus       734 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v  813 (1106)
                          +.......|.++...++|. |-+++.++.+..|+.....+.            .+....+..     ...-....|
T Consensus       351 ----~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~------------~~~~~~~~~-----~~~l~~~~v  408 (795)
T 4a2l_A          351 ----KNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFT------------SYTLQEDES-----ARGIGSNNI  408 (795)
T ss_dssp             ----SSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEE------------EECCC-----------CCSCSCE
T ss_pred             ----CCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEE------------EEecCCCCc-----ccCCCCccE
Confidence                0001235688888888887 455666666777765422110            000000000     000024679


Q ss_pred             eEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeec----CCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEE
Q 001295          814 PCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM----PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS  888 (1106)
Q Consensus       814 ~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~----~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~  888 (1106)
                      .+++..++++.|.+|. ++.|..||..+++......    .....|.++...+ ++.+.+ |+. +-+.+||..+++...
T Consensus       409 ~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwi-gt~-~Gl~~~~~~~~~~~~  485 (795)
T 4a2l_A          409 KAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWL-GTL-SALVRFNPEQRSFTT  485 (795)
T ss_dssp             EEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEE-EES-SCEEEEETTTTEEEE
T ss_pred             EEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEE-Eec-CceeEEeCCCCeEEE
Confidence            9999999998444555 6889999988766433221    1345689999887 666555 444 458899988776543


Q ss_pred             EecC------cccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE
Q 001295          889 KLKG------HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV  962 (1106)
Q Consensus       889 ~l~~------h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~  962 (1106)
                      ....      +...|.++...++|.+.+... +| |..|+..+++.   ...............|.++...++|.+.+++
T Consensus       486 ~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~G-l~~~~~~~~~~---~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT  560 (795)
T 4a2l_A          486 IEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EG-LSVFKQEGLDI---QKASILPVSNVTKLFTNCIYEASNGIIWVGT  560 (795)
T ss_dssp             CCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SC-EEEEEEETTEE---EECCCSCSCGGGGSCEEEEEECTTSCEEEEE
T ss_pred             ccccccccccCCceEEEEEECCCCCEEEEeC-Cc-eEEEeCCCCeE---EEecCCCCCCCCCCeeEEEEECCCCCEEEEe
Confidence            2211      236789999999998777655 44 88888876432   1110000001112467888999999977765


Q ss_pred             eCCeEEEEecCCceEeeecccCC-CCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCcc
Q 001295          963 HETQLAIFETTKLECVKQWVPRE-SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVH 1041 (1106)
Q Consensus       963 ~d~~v~i~d~~~~~~~~~~~~~~-h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 1041 (1106)
                      .. .+..||..+++...--...+ ....|.++...++|.+.+++  ++-|..||..+++.. .+....-++..    ...
T Consensus       561 ~~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t--~~Gl~~~~~~~~~~~-~~~~~dGl~~~----~f~  632 (795)
T 4a2l_A          561 RE-GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST--NRGISCFNPETEKFR-NFTESDGLQSN----QFN  632 (795)
T ss_dssp             SS-CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE--TTEEEEEETTTTEEE-EECGGGTCSCS----CEE
T ss_pred             CC-CceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc--CCceEEEcCCCCcEE-EcCCcCCCccc----cCc
Confidence            54 78899988776543221112 24579999999999876654  345777898877643 34322222221    122


Q ss_pred             ceEEEEeCCCCCEEEEEeCCCcEEEEeecC
Q 001295         1042 PLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1071 (1106)
Q Consensus      1042 ~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~ 1071 (1106)
                      .-++...+ +|.+ ..|+.+| +..++...
T Consensus       633 ~~~~~~~~-~G~l-~~g~~~G-l~~~~p~~  659 (795)
T 4a2l_A          633 TASYCRTS-VGQM-YFGGING-ITTFRPEL  659 (795)
T ss_dssp             EEEEEECT-TSCE-EEEETTE-EEEECGGG
T ss_pred             cCceeECC-CCeE-EEecCCc-eEEEcHHH
Confidence            12445554 5654 4456566 55666554

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.62  E-value=3e-10  Score=140.91  Aligned_cols=545  Identities=10%  Similarity=0.082  Sum_probs=316.2

Q ss_pred             CCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEE
Q 001295          350 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV  429 (1106)
Q Consensus       350 ~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las  429 (1106)
                      ...|+++.-.++|.  +-.|+.+| +..||-.   .     |+.+......    .  -.-....|.++...++|.+.+ 
T Consensus        42 ~n~v~~I~qD~~G~--lWigT~~G-L~ryDG~---~-----f~~~~~~~~~----~--~~l~~n~I~~i~~d~~g~lWi-  103 (795)
T 4a2l_A           42 QSTVFSIDQDKRGN--MWFATYDG-VNKYDGY---A-----FTVYQHNEDD----P--NSIANDISRIVKTDSQGRVWI-  103 (795)
T ss_dssp             SSCEEEEEECTTSC--EEEEETTE-EEEECSS---C-----EEEECCCTTC----T--TSCSCSCEEEEEECTTSCEEE-
T ss_pred             cceeEEEEEcCCCC--EEEeecCc-CcccCCC---c-----eEEEeCCCCC----C--CcccccceeEEEECCCCCEEE-
Confidence            46899999999997  44556665 5666632   2     1222110000    0  011245799999999987665 


Q ss_pred             EeCCCeEEEEEccCCceeeeeeeecccc----CCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEecc-CCC-
Q 001295          430 AYSRHIVQIYSYHGGDEVRQHLEIDAHV----GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH-EAP-  503 (1106)
Q Consensus       430 ~~~d~~v~iwd~~~~~~~~~~~~l~~h~----~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h-~~~-  503 (1106)
                      |+.+| +..||..+++...    +....    ..|.++...++|.  +.+.. . +-|.+||..+++......++ ... 
T Consensus       104 gT~~G-l~~yd~~~~~f~~----~~~~~~~~~~~i~~i~~d~~g~--lwi~t-~-~gl~~~~~~~~~~~~~~~~~~~~~~  174 (795)
T 4a2l_A          104 GTRDG-LSRYDEEKDIFQN----FFYEKNGKHLQVNGIEEISPEQ--LLIST-P-EGLIMFDIKESKFIDDSFSTAMHKT  174 (795)
T ss_dssp             EESSC-EEEEETTTTEEEE----ECCEETTEECCCCEEEEEETTE--EEEEE-T-TEEEEEETTTTEEECSSSCHHHHTC
T ss_pred             EeCCc-hheeCCCCCeEEe----ccccccCCCceEEEEEECCCCC--EEEEE-C-CceEEEECCCCEEEeccCCCCCCcc
Confidence            55555 8999988765322    22111    1288999888887  44443 3 45889997776532211111 122 


Q ss_pred             eEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEe-eCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEE
Q 001295          504 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  582 (1106)
Q Consensus       504 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~  582 (1106)
                      |.++...  .++. +..++.++-|..||..+....... ......|.++...+++                     . +.
T Consensus       175 i~~i~~d--~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g---------------------~-lw  229 (795)
T 4a2l_A          175 IASTLYR--QGDQ-IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPT---------------------R-IW  229 (795)
T ss_dssp             CEEEEEE--ETTE-EEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETT---------------------E-EE
T ss_pred             eEEEEEC--CCCC-EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCC---------------------C-EE
Confidence            7777643  3444 555666555888887654322110 1112234444443333                     3 55


Q ss_pred             EEECCCeEEEEECCCcceeEEEccC-----CCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccc
Q 001295          583 AAGDDFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDAS  657 (1106)
Q Consensus       583 ~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  657 (1106)
                      .++.++-|.+||..+++........     -....|.++...++|.+.+ |+.+ .|.+|+..++. . ..+.....   
T Consensus       230 igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~-~-~~~~~~~~---  302 (795)
T 4a2l_A          230 VATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDS-F-ASYSSNPV---  302 (795)
T ss_dssp             EEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTTE-E-EEECCCTT---
T ss_pred             EEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCe-E-EEEecCCC---
Confidence            5555555889998776554332211     0123578888888887665 4444 68888876541 1 11000000   


Q ss_pred             cCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceeccc
Q 001295          658 RTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL  737 (1106)
Q Consensus       658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~  737 (1106)
                                                                                               .      
T Consensus       303 -------------------------------------------------------------------------~------  303 (795)
T 4a2l_A          303 -------------------------------------------------------------------------E------  303 (795)
T ss_dssp             -------------------------------------------------------------------------S------
T ss_pred             -------------------------------------------------------------------------C------
Confidence                                                                                     0      


Q ss_pred             CccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEE
Q 001295          738 PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA  817 (1106)
Q Consensus       738 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~  817 (1106)
                      +.......|.++...++|. +-.++.++.+..|+.....+.            .+.....   .    ..-....|.+++
T Consensus       304 ~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~------------~~~~~~~---~----~~l~~~~V~~i~  363 (795)
T 4a2l_A          304 NGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFK------------NIRNIPY---K----NSLSDNVVSCIV  363 (795)
T ss_dssp             TTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSE------------EECCCTT---S----SSCSCSSEEEEE
T ss_pred             CCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccce------------EEcCCCC---C----CCCCCCeeEEEE
Confidence            0001345688999999988 455666666777765432110            0110000   0    001355699999


Q ss_pred             EecCCCEEEEEeCCeEEEEEcCCCceeeeecC--------CCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEE
Q 001295          818 LSKNDSYVMSASGGKISLFNMMTFKTMATFMP--------PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK  889 (1106)
Q Consensus       818 ~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~--------~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~  889 (1106)
                      ..++|.+.+...++.|..|+..+++.......        ....|.+++..+ ++++|.+|+.++-|.+||..+++...-
T Consensus       364 ~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~~~~~~~~~  442 (795)
T 4a2l_A          364 EDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILHRNSGQVENF  442 (795)
T ss_dssp             ECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEETTTCCEEEE
T ss_pred             ECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEeCCCCcEEEe
Confidence            99998877655577899999887654332211        235689999988 777466677777799999887764332


Q ss_pred             ec----CcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccC-CCCCCCCCCceEEEcCCCcEEEEEeC
Q 001295          890 LK----GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPT-GRTPTAQSDTRVQFHQDQIHFLVVHE  964 (1106)
Q Consensus       890 l~----~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~s~dg~~l~~~~d  964 (1106)
                      ..    .+...|.++...++|.+.+... +| |.+|+..+++...   ..... ........|.++...++|+..+.+. 
T Consensus       443 ~~~~~~l~~~~v~~i~~d~~g~lwigt~-~G-l~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-  516 (795)
T 4a2l_A          443 NQRNSQLVNENVYAILPDGEGNLWLGTL-SA-LVRFNPEQRSFTT---IEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-  516 (795)
T ss_dssp             CTTTSCCSCSCEEEEEECSSSCEEEEES-SC-EEEEETTTTEEEE---CCBCTTCCBCCCCCEEEEEECTTCCEEEEES-
T ss_pred             ecCCCCcCCCeeEEEEECCCCCEEEEec-Cc-eeEEeCCCCeEEE---ccccccccccCCceEEEEEECCCCCEEEEeC-
Confidence            21    2346799999988888766554 55 8889987754211   11100 0011124678899999999877766 


Q ss_pred             CeEEEEecCCceEeeeccc-----CCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCC
Q 001295          965 TQLAIFETTKLECVKQWVP-----RESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSN 1039 (1106)
Q Consensus       965 ~~v~i~d~~~~~~~~~~~~-----~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1106)
                      +.+..||..+++. . +..     ......|.++...++|.+.++. .. -|..||..+++.. .+....-++.    ..
T Consensus       517 ~Gl~~~~~~~~~~-~-~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~-Gl~~~d~~~~~~~-~~~~~~gl~~----~~  587 (795)
T 4a2l_A          517 EGLSVFKQEGLDI-Q-KASILPVSNVTKLFTNCIYEASNGIIWVGT-RE-GFYCFNEKDKQIK-RYNTTNGLPN----NV  587 (795)
T ss_dssp             SCEEEEEEETTEE-E-ECCCSCSCGGGGSCEEEEEECTTSCEEEEE-SS-CEEEEETTTTEEE-EECGGGTCSC----SC
T ss_pred             CceEEEeCCCCeE-E-EecCCCCCCCCCCeeEEEEECCCCCEEEEe-CC-CceeECCCCCcEE-EeCCCCCCch----hh
Confidence            7799999887765 2 210     1124579999999999866544 34 5788998877554 3332222332    22


Q ss_pred             ccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCC
Q 001295         1040 VHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus      1040 v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
                      +.  ++...+ +|++.+++  ++-|..|+..+.+
T Consensus       588 i~--~i~~d~-~g~lWi~t--~~Gl~~~~~~~~~  616 (795)
T 4a2l_A          588 VY--GILEDS-FGRLWLST--NRGISCFNPETEK  616 (795)
T ss_dssp             EE--EEEECT-TSCEEEEE--TTEEEEEETTTTE
T ss_pred             eE--EEEECC-CCCEEEEc--CCceEEEcCCCCc
Confidence            44  666665 56665544  4557778876654

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.61  E-value=1.3e-13  Score=153.15  Aligned_cols=220  Identities=10%  Similarity=0.081  Sum_probs=152.8

Q ss_pred             CeeEEEEecCCCEEEEEe-C---Ce--EEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCC------------
Q 001295          812 AVPCFALSKNDSYVMSAS-G---GK--ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD------------  873 (1106)
Q Consensus       812 ~v~~l~~s~~~~~l~~~s-d---g~--i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~d------------  873 (1106)
                      .+..++|||||++|+..+ +   +.  |.+|++.+++.......+ . +..++|+| |++.|+.++.+            
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~  136 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDD  136 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECT-TSSEEEEEEECCCC---------
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECC-CCCEEEEEEccCCCcCCcEEEcc
Confidence            467899999999999886 2   33  888898887765544433 3 99999999 88888877632            


Q ss_pred             ---------------CcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCC-------cEEEEeCCCcccccc
Q 001295          874 ---------------SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS-------QLCVWSSDGWEKQKN  931 (1106)
Q Consensus       874 ---------------g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg-------~i~vwd~~~~~~~~~  931 (1106)
                                     ..|++||+.+++.+..+.. . .+..++|+||| ++++++.++       ...||.+++++.   
T Consensus       137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~---  210 (347)
T 2gop_A          137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE---  210 (347)
T ss_dssp             CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE---
T ss_pred             cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce---
Confidence                           5799999998887555554 3 78999999999 888776542       445555544322   


Q ss_pred             eeecccCCCCCCCCCCceEEEcCCCcEEEE-EeC--------CeEEEEecCCceEeeecccCCCCCCeeE-EEECCCCCE
Q 001295          932 RFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHE--------TQLAIFETTKLECVKQWVPRESSAPITH-ATFSCDSQL 1001 (1106)
Q Consensus       932 ~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d--------~~v~i~d~~~~~~~~~~~~~~h~~~v~~-l~~s~d~~~ 1001 (1106)
                      ..+..  +  .   .+.  .++|||++|+. +.+        ..|.+||  +++......  +|...+.. +.|+ |+ +
T Consensus       211 ~~l~~--~--~---~~~--~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~--~~~~~~~~~~~~s-dg-~  275 (347)
T 2gop_A          211 EKMFE--K--V---SFY--AVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILD--EVDRGVGQAKIKD-GK-V  275 (347)
T ss_dssp             EEEEE--E--E---SEE--EEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESST--TCCSEEEEEEEET-TE-E
T ss_pred             EEecc--C--c---cee--eECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccc--cCCcccCCccEEc-Cc-E
Confidence            11111  1  1   223  33999999887 433        3688888  555544332  55678886 9999 88 8


Q ss_pred             EEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcE-EEEeec
Q 001295         1002 VYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGV-HVFEPL 1070 (1106)
Q Consensus      1002 l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v-~vW~~~ 1070 (1106)
                      +++++.++.++|| +.+++......       +  ...+.  .++|+|   .++++++.++.. .+|.+.
T Consensus       276 ~~~~~~~~~~~l~-~~~g~~~~~~~-------~--~~~v~--~~~~s~---~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          276 YFTLFEEGSVNLY-IWDGEIKPIAK-------G--RHWIM--GFDVDE---IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             EEEEEETTEEEEE-EESSSEEEEEC-------S--SSEEE--EEEESS---SEEEEEECSSSCCEEEEES
T ss_pred             EEEEecCCcEEEE-EcCCceEEEec-------C--CCeEE--eeeeeC---cEEEEEcCCCChHHheEeC
Confidence            8999999999999 88666543332       1  12244  678887   577777777765 788876

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.58  E-value=5.6e-13  Score=144.18  Aligned_cols=243  Identities=10%  Similarity=0.081  Sum_probs=167.4

Q ss_pred             eeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCC
Q 001295          345 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  424 (1106)
Q Consensus       345 ~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg  424 (1106)
                      ....+.....+++|+|+|+.|++++..++.|..||..++  ...                   +..+...+.+++++|+|
T Consensus        22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~-------------------~~~~~~~~~~l~~~~dg   80 (296)
T 3e5z_A           22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSP-------------------EMHPSHHQNGHCLNKQG   80 (296)
T ss_dssp             EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEE-------------------EESSCSSEEEEEECTTC
T ss_pred             EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEE-------------------EECCCCCcceeeECCCC
Confidence            333466788999999999977889999999999999876  221                   33456689999999999


Q ss_pred             CEEEEEeCCCeEEEEEccCCceeeeeeeecc-ccCCeeEEEEcCCCCceEEEE----ec-------------CCCcEEEE
Q 001295          425 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVIT----CG-------------DDKTIKVW  486 (1106)
Q Consensus       425 ~~las~~~d~~v~iwd~~~~~~~~~~~~l~~-h~~~V~~~~~s~d~~~~~l~s----~~-------------~d~~i~iw  486 (1106)
                      +++++...++.|.+||..+++.........+ ....+..++++|+|+  ++++    |.             ..+.|..+
T Consensus        81 ~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~  158 (296)
T 3e5z_A           81 HLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRWVFRL  158 (296)
T ss_dssp             CEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCEEEEE
T ss_pred             cEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcEEEEE
Confidence            9888877778999999988764332111111 123578899999998  6776    33             13456666


Q ss_pred             eCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCce----eEeeCCCCeeEEEEEecCCCeEEE
Q 001295          487 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR----VDYEAPGRWCTTMAYSADGTRTYQ  562 (1106)
Q Consensus       487 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~v~~~~~s~~~~~~~~  562 (1106)
                      |.. ++ +..+..+......++|++  +++.+++.+.++.|.+|++......    ..+.....                
T Consensus       159 ~~~-g~-~~~~~~~~~~~~gi~~s~--dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~----------------  218 (296)
T 3e5z_A          159 APD-GT-LSAPIRDRVKPNGLAFLP--SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPG----------------  218 (296)
T ss_dssp             CTT-SC-EEEEECCCSSEEEEEECT--TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSS----------------
T ss_pred             CCC-CC-EEEeecCCCCCccEEECC--CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCC----------------
Confidence            644 44 445556667788899855  4466788888899999998732222    11111111                


Q ss_pred             eeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEE-ccCCCEEEEEeCCCcEEEEEccC
Q 001295          563 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRF-NKDGCLLAVSTNDNGIKILATSD  641 (1106)
Q Consensus       563 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~-s~~~~~l~~~~~dg~i~iwd~~~  641 (1106)
                           ....++++++|+.+++.  ++.|.+||.. ++.+..+..+.  . +.+++| +|+++.|++++.++ +.-++..+
T Consensus       219 -----~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~--~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~  286 (296)
T 3e5z_A          219 -----KTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQ--T-TSNLCFGGPEGRTLYMTVSTE-FWSIETNV  286 (296)
T ss_dssp             -----CCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSS--C-CCEEEEESTTSCEEEEEETTE-EEEEECSC
T ss_pred             -----CCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCC--C-ceeEEEECCCCCEEEEEcCCe-EEEEEccc
Confidence                 23345666666655555  8899999986 77777776553  2 789999 58999999988763 44445444


Q ss_pred             C
Q 001295          642 G  642 (1106)
Q Consensus       642 ~  642 (1106)
                      .
T Consensus       287 ~  287 (296)
T 3e5z_A          287 R  287 (296)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.56  E-value=6e-13  Score=146.89  Aligned_cols=283  Identities=12%  Similarity=0.088  Sum_probs=186.0

Q ss_pred             cceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCC
Q 001295          744 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS  823 (1106)
Q Consensus       744 ~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~  823 (1106)
                      ..|.+++|++++..++..+.++.++.|.-.                         .... +.  .+...+.+++|+++|+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~-~~--~~~~~~~~~~~~~~g~   57 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTITAE-------------------------PWLE-IS--KKGLQLEGLNFDRQGQ   57 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEEECE-------------------------EEEE-EE--SSCCCEEEEEECTTSC
T ss_pred             cccceeeecCCccceeEEeecccCcccccc-------------------------eeEE-Ee--ccCccccCcEECCCCC
Confidence            456677888888877777677777766211                         0000 11  1455678999999999


Q ss_pred             EEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCC----CcEEEEEeecceEEEEec--CcccC
Q 001295          824 YVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD----SSIQIYNVRVDEVKSKLK--GHSKR  896 (1106)
Q Consensus       824 ~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~d----g~v~iwd~~~~~~~~~l~--~h~~~  896 (1106)
                      +++++. ++.|.+||..+++.......+...+.++++++ +++++++...+    +.|++||..+++....+.  .+...
T Consensus        58 l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~  136 (333)
T 2dg1_A           58 LFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYC  136 (333)
T ss_dssp             EEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCC
T ss_pred             EEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCc
Confidence            777776 78999999998876655445667899999999 78888877666    689999988776543332  34567


Q ss_pred             eeEEEEecCCCEEEEEcC------CCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE--eCCeEE
Q 001295          897 ITGLAFSHALNVLVSSGA------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLA  968 (1106)
Q Consensus       897 V~~l~~s~d~~~l~s~s~------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~--~d~~v~  968 (1106)
                      +.+++++|+|+++++...      .+.|..|+.++++...  .....       ..+..++|+|||+.|+++  .++.|.
T Consensus       137 ~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~-------~~~~~i~~~~dg~~l~v~~~~~~~i~  207 (333)
T 2dg1_A          137 IDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP--IIQNI-------SVANGIALSTDEKVLWVTETTANRLH  207 (333)
T ss_dssp             EEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE--EEEEE-------SSEEEEEECTTSSEEEEEEGGGTEEE
T ss_pred             ccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE--eecCC-------CcccceEECCCCCEEEEEeCCCCeEE
Confidence            899999999998887764      2455556655433211  11110       135789999999876653  468999


Q ss_pred             EEecCC-ceEeee-----c-ccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCcc
Q 001295          969 IFETTK-LECVKQ-----W-VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVH 1041 (1106)
Q Consensus       969 i~d~~~-~~~~~~-----~-~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 1041 (1106)
                      +||+.+ +..+..     . ...++ ..+..++++++|+++++...++.|.+||. +++.+..+..... ..+|   ...
T Consensus       208 ~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~-~~g~---~~~  281 (333)
T 2dg1_A          208 RIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGR-DEGH---MLR  281 (333)
T ss_dssp             EEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTG-GGTC---SCB
T ss_pred             EEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCC-cccc---ccC
Confidence            999964 322211     1 11122 46788999999998888878899999998 5666666541110 0011   012


Q ss_pred             ceEEEEeCCCCCEEEEEeCCC----cEEEEeecC
Q 001295         1042 PLVIAAHPQEPNEFALGLSDG----GVHVFEPLE 1071 (1106)
Q Consensus      1042 ~~~~~~~~~d~~~l~t~~~Dg----~v~vW~~~~ 1071 (1106)
                      +..++|+| |++.|+.++.++    .-.||.+..
T Consensus       282 ~~~~~~~~-dg~~L~v~~~~g~~~~~~~l~~~~~  314 (333)
T 2dg1_A          282 STHPQFIP-GTNQLIICSNDIEMGGGSMLYTVNG  314 (333)
T ss_dssp             CCEEEECT-TSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred             cceEEECC-CCCEEEEEeCccCCCCCceEEEEec
Confidence            34799987 566666555553    344555543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.56  E-value=3.3e-13  Score=150.03  Aligned_cols=221  Identities=11%  Similarity=0.103  Sum_probs=143.5

Q ss_pred             CCcEEEEEecCCCeEEEEEe--------ccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEcc
Q 001295          351 SSPMSMDFHPVQQTLLLVGT--------NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  422 (1106)
Q Consensus       351 ~~v~~~~~sp~g~~llatg~--------~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp  422 (1106)
                      ..+..+++  ||++++.+..        .++.|.+||+.+++...                    +    ..+..++|||
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------------------l----~~~~~~~~Sp   68 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--------------------I----ENATMPRISP   68 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--------------------E----ESCEEEEECT
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--------------------c----ccCCCeEECC
Confidence            45677788  9997555432        25679999998876432                    2    4688999999


Q ss_pred             CCCEEEEEeCC---C--eEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecC------------------
Q 001295          423 DGSLFGVAYSR---H--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD------------------  479 (1106)
Q Consensus       423 dg~~las~~~d---~--~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~------------------  479 (1106)
                      ||++||.++.+   +  .|.+||+.+++...    +..+.. +..++|+|||+.  |+.++.                  
T Consensus        69 Dg~~la~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~~--l~~~~~~~~~~~~~~~~~~~~~~~  141 (347)
T 2gop_A           69 DGKKIAFMRANEEKKVSEIWVADLETLSSKK----ILEAKN-IRSLEWNEDSRK--LLIVGFKRREDEDFIFEDDVPAWF  141 (347)
T ss_dssp             TSSEEEEEEEETTTTEEEEEEEETTTTEEEE----EEEESE-EEEEEECTTSSE--EEEEEECCCC---------CCCC-
T ss_pred             CCCEEEEEEeccCCCcceEEEEECCCCceEE----EEcCCC-ccceeECCCCCE--EEEEEccCCCcCCcEEEcccceee
Confidence            99999988754   3  47888888876543    222334 999999999994  554432                  


Q ss_pred             ---------CCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCC-------eEEEEeCCCCCceeEeeC
Q 001295          480 ---------DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDG-------KIKAWLYDNLGSRVDYEA  543 (1106)
Q Consensus       480 ---------d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg-------~i~iwd~~~~~~~~~~~~  543 (1106)
                               ...|++||+.+++.+..+.. . .+..++|+  ++| +++++..++       ...+|.++ ......+..
T Consensus       142 ~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~s--pdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~  215 (347)
T 2gop_A          142 DDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWH--RDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKMFE  215 (347)
T ss_dssp             --------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEE--TTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEEEE
T ss_pred             cCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCC--CCe-EEEEEecccccccccccccEEEeC-CCceEEecc
Confidence                     35799999998887555654 3 77788875  455 777775542       34555443 222222211


Q ss_pred             CCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECC--------CeEEEEECCCcceeEEEccCCCCCCcCe
Q 001295          544 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD--------FSIKFWDMDSVQLLTSIDADGGLPASPR  615 (1106)
Q Consensus       544 ~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~~v~~  615 (1106)
                      + .                     .+..  ++|+|++++.++.+        ..|++||  +++.......+  ...+..
T Consensus       216 ~-~---------------------~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~--~~~~~~  267 (347)
T 2gop_A          216 K-V---------------------SFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEV--DRGVGQ  267 (347)
T ss_dssp             E-E---------------------SEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTC--CSEEEE
T ss_pred             C-c---------------------ceee--ECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccC--CcccCC
Confidence            1 1                     1111  25566667666533        4788888  55544333322  234665


Q ss_pred             -EEEccCCCEEEEEeCCCcEEEEEccC
Q 001295          616 -IRFNKDGCLLAVSTNDNGIKILATSD  641 (1106)
Q Consensus       616 -v~~s~~~~~l~~~~~dg~i~iwd~~~  641 (1106)
                       +.|+ |+ ++++++.++.+++| +.+
T Consensus       268 ~~~~s-dg-~~~~~~~~~~~~l~-~~~  291 (347)
T 2gop_A          268 AKIKD-GK-VYFTLFEEGSVNLY-IWD  291 (347)
T ss_dssp             EEEET-TE-EEEEEEETTEEEEE-EES
T ss_pred             ccEEc-Cc-EEEEEecCCcEEEE-EcC
Confidence             8899 88 88999999999999 863

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.56  E-value=8.9e-13  Score=144.44  Aligned_cols=238  Identities=11%  Similarity=0.130  Sum_probs=172.3

Q ss_pred             CCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEE
Q 001295          811 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK  889 (1106)
Q Consensus       811 ~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~  889 (1106)
                      .....+++. +++..++.. ++.|.+||..+++.+.++. .......+++++ +++++++...++.|.+||..+++....
T Consensus        44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~  120 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGY  120 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEE
T ss_pred             ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEE
Confidence            446677774 344444444 7999999999999988885 346689999998 676655554789999999999998877


Q ss_pred             ecCcc-----cCeeEEEEecCCCEEEEEc-CCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-
Q 001295          890 LKGHS-----KRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-  962 (1106)
Q Consensus       890 l~~h~-----~~V~~l~~s~d~~~l~s~s-~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-  962 (1106)
                      +....     .....+++ .+++.+++.. .++.|.+||..+++....  +..  +     .....++++|+|++++++ 
T Consensus       121 i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~--i~~--g-----~~p~~i~~~~dG~l~v~~~  190 (328)
T 3dsm_A          121 IECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDE--LTI--G-----IQPTSLVMDKYNKMWTITD  190 (328)
T ss_dssp             EECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEE--EEC--S-----SCBCCCEECTTSEEEEEBC
T ss_pred             EEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEE--EEc--C-----CCccceEEcCCCCEEEEEC
Confidence            65433     14567888 4444444443 488999999998664322  111  2     234789999999987774 


Q ss_pred             eC----------CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccC
Q 001295          963 HE----------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLP 1032 (1106)
Q Consensus       963 ~d----------~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~ 1032 (1106)
                      .+          +.|.++|..+++....+.... ......++|+||+++|+++..  .|.+||..+++....    .+.+
T Consensus       191 ~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~-g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~----~~~~  263 (328)
T 3dsm_A          191 GGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL-GDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVR----PFLE  263 (328)
T ss_dssp             CBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT-TCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSS----CSBC
T ss_pred             CCccCCccccCCceEEEEECCCCeEEEEEecCC-CCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeee----eeec
Confidence            32          689999999999887765322 347899999999999988754  899999998876421    1112


Q ss_pred             CCCCCCCccceEEEEeCCCCCEEEEE----eCCCcEEEEeecCCC
Q 001295         1033 AGVSSSNVHPLVIAAHPQEPNEFALG----LSDGGVHVFEPLESE 1073 (1106)
Q Consensus      1033 ~~~~~~~v~~~~~~~~~~d~~~l~t~----~~Dg~v~vW~~~~~~ 1073 (1106)
                      .+    .-.|..++++|++++++++.    ..++.|.+|+.. ++
T Consensus       264 ~~----~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~  303 (328)
T 3dsm_A          264 FR----DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK  303 (328)
T ss_dssp             CC----SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred             CC----CCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC
Confidence            11    13455899999777888887    778999999988 66

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.55  E-value=7.3e-13  Score=162.31  Aligned_cols=246  Identities=10%  Similarity=0.001  Sum_probs=163.7

Q ss_pred             CCCCcEEEEEecCCCeEEEEEeccC----cEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCC
Q 001295          349 QGSSPMSMDFHPVQQTLLLVGTNVG----DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  424 (1106)
Q Consensus       349 h~~~v~~~~~sp~g~~llatg~~dg----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg  424 (1106)
                      |...+..++|||||++|+.+.+.+|    .|++||+.+++.+..                  .+..  ..+..++|||||
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~------------------~~~~--~~~~~~~wspDg  182 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD------------------VLER--VKFSCMAWTHDG  182 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE------------------EEEE--ECSCCEEECTTS
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc------------------cccC--cccceEEEEeCC
Confidence            4446889999999997444444344    899999999887542                  0111  136779999999


Q ss_pred             CEEEEEeCCCe----------------EEEEEccCCcee-eeeeeeccccCCeeEEEEcCCCCceEEEEecC-----CCc
Q 001295          425 SLFGVAYSRHI----------------VQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD-----DKT  482 (1106)
Q Consensus       425 ~~las~~~d~~----------------v~iwd~~~~~~~-~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~-----d~~  482 (1106)
                      +.|+.++.++.                |++|++.+++.. ..+.....|...+..+.|+|||+.  |+.++.     +..
T Consensus       183 ~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~--l~~~~~~~~~~~~~  260 (710)
T 2xdw_A          183 KGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY--VLLSIREGCDPVNR  260 (710)
T ss_dssp             SEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECSSSSCCE
T ss_pred             CEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCE--EEEEEEccCCCccE
Confidence            99999987765                999999887632 111122335666889999999995  443332     678


Q ss_pred             EEEEeCCC------Cc-eeEEEeccCCCeEEEeccccCCceEEEEEec----CCeEEEEeCCCCCc--eeEeeCCCC--e
Q 001295          483 IKVWDATN------GA-KQYIFEGHEAPVYSVCPHHKENIQFIFSTAL----DGKIKAWLYDNLGS--RVDYEAPGR--W  547 (1106)
Q Consensus       483 i~iwd~~~------~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~~--~~~~~~~~~--~  547 (1106)
                      |++||+.+      +. ....+..+...+... |++++  ..|+..+.    .+.|.+||+.+...  ...+..+..  .
T Consensus       261 l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~dg--~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~  337 (710)
T 2xdw_A          261 LWYCDLQQESNGITGILKWVKLIDNFEGEYDY-VTNEG--TVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDV  337 (710)
T ss_dssp             EEEEEGGGSSSSSCSSCCCEEEECSSSSCEEE-EEEET--TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE
T ss_pred             EEEEECcccccccCCccceEEeeCCCCcEEEE-EeccC--CEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCe
Confidence            99999986      53 466777776666553 44443  44544443    33699999887542  123333322  3


Q ss_pred             eEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCC--eEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEE
Q 001295          548 CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL  625 (1106)
Q Consensus       548 v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l  625 (1106)
                      +..++++                     +++..+++...++  .|++|++.+++.+..+..+  ...+..++++|++..+
T Consensus       338 ~~~~~~~---------------------~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l  394 (710)
T 2xdw_A          338 LEWVACV---------------------RSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEI  394 (710)
T ss_dssp             EEEEEEE---------------------TTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEE
T ss_pred             EEEEEEE---------------------cCCEEEEEEEECCEEEEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEE
Confidence            4444444                     3334567777777  4667787778877777655  3457788999998776


Q ss_pred             EEEe----CCCcEEEEEccCC
Q 001295          626 AVST----NDNGIKILATSDG  642 (1106)
Q Consensus       626 ~~~~----~dg~i~iwd~~~~  642 (1106)
                      +...    ..++|+.||+.++
T Consensus       395 ~~~~ss~~~P~~i~~~d~~tg  415 (710)
T 2xdw_A          395 FYQFTSFLSPGIIYHCDLTKE  415 (710)
T ss_dssp             EEEEECSSCCCEEEEEETTSS
T ss_pred             EEEEeCCCCCCEEEEEECCCC
Confidence            6442    2478999999877

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.55  E-value=1.5e-12  Score=140.88  Aligned_cols=238  Identities=11%  Similarity=0.078  Sum_probs=167.0

Q ss_pred             ccceEEEEEcCCCc-eEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecC
Q 001295          743 ATKISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  821 (1106)
Q Consensus       743 ~~~i~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~  821 (1106)
                      .....+++|+|+++ .+++...++.|..|+...                      + ...  +..  +...+.+++++++
T Consensus        27 ~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~----------------------~-~~~--~~~--~~~~~~~l~~~~d   79 (296)
T 3e5z_A           27 FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDG----------------------Q-LSP--EMH--PSHHQNGHCLNKQ   79 (296)
T ss_dssp             CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTS----------------------C-EEE--EES--SCSSEEEEEECTT
T ss_pred             CccccCCeEeCCCCEEEEEeCCCCEEEEEECCC----------------------C-eEE--EEC--CCCCcceeeECCC
Confidence            34567899999998 666777789999887652                      2 111  111  4566899999999


Q ss_pred             CCEEEEEe-CCeEEEEEcCCCceeeeecCC----CCCeeEEEEecCCCceEEE----eeC-------------CCcEEEE
Q 001295          822 DSYVMSAS-GGKISLFNMMTFKTMATFMPP----PPAATFLAFHPQDNNIIAI----GMD-------------DSSIQIY  879 (1106)
Q Consensus       822 ~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~----~~~v~~l~~s~~d~~~la~----g~~-------------dg~v~iw  879 (1106)
                      |+++++.. ++.|.+||..+++........    ...+..++++| +|+++++    |+.             .+.|+.+
T Consensus        80 g~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~  158 (296)
T 3e5z_A           80 GHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRL  158 (296)
T ss_dssp             CCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEE
T ss_pred             CcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEE
Confidence            99887776 589999999887754332211    23467899999 8888887    331             2345555


Q ss_pred             EeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCC-Cccc-ccceeecccCCCCCCCCCCceEEEcCCCc
Q 001295          880 NVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD-GWEK-QKNRFLQIPTGRTPTAQSDTRVQFHQDQI  957 (1106)
Q Consensus       880 d~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~-~~~~-~~~~~~~~~~~~~~~~~~i~~~~~s~dg~  957 (1106)
                      +.. ++ +..+..+.....+++|+||++.|++.+.++.|.+|++. +++. .....+   ...   ...+..++++++|+
T Consensus       159 ~~~-g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~---~~~---~~~p~~i~~d~~G~  230 (296)
T 3e5z_A          159 APD-GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF---TVE---PGKTDGLRVDAGGL  230 (296)
T ss_dssp             CTT-SC-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE---CCS---SSCCCSEEEBTTSC
T ss_pred             CCC-CC-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe---eCC---CCCCCeEEECCCCC
Confidence            544 44 34455666778999999999999888888999999997 3332 111222   111   13567899999999


Q ss_pred             EEEEEeCCeEEEEecCCceEeeecccCCCCCCeeEEEE-CCCCCEEEEEEcCCeEEEEEcCCceeE
Q 001295          958 HFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATF-SCDSQLVYACFLDATVCVFSAANLKLR 1022 (1106)
Q Consensus       958 ~l~~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~-s~d~~~l~t~s~Dg~i~vwd~~~~~~~ 1022 (1106)
                      ++++. ++.|.+||.. ++.+..+.  .+.. +++++| +||++.|++++.++ +.-++..+.++.
T Consensus       231 l~v~~-~~~v~~~~~~-g~~~~~~~--~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~~  290 (296)
T 3e5z_A          231 IWASA-GDGVHVLTPD-GDELGRVL--TPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGLE  290 (296)
T ss_dssp             EEEEE-TTEEEEECTT-SCEEEEEE--CSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBCC
T ss_pred             EEEEc-CCeEEEECCC-CCEEEEEE--CCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccccccc
Confidence            77777 8999999987 66766665  3344 999999 68999999888764 444566665443

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.55  E-value=7.3e-13  Score=140.33  Aligned_cols=253  Identities=11%  Similarity=0.041  Sum_probs=185.0

Q ss_pred             CCCEEEEEe-CCeEEEEEcCCCceeeeecCCC-CCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcc-cCe
Q 001295          821 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS-KRI  897 (1106)
Q Consensus       821 ~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~-~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~-~~V  897 (1106)
                      .+++|++++ ++.|.+||.++++.+.++..+. ..+.+++++| ++++|+  +.++.|+.||. +|+.+.++..+. ..+
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~   79 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM   79 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence            457788887 8999999999999999988766 4789999999 888888  34778999998 899998888753 578


Q ss_pred             eEEEEecCCCEEEEEcC-CCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeEEEEecCCc
Q 001295          898 TGLAFSHALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKL  975 (1106)
Q Consensus       898 ~~l~~s~d~~~l~s~s~-Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v~i~d~~~~  975 (1106)
                      .++.+.+||++|++.+. ++.|..++. .++......+.  .+..........+++.++|+++++. .++.|..||.+ +
T Consensus        80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~--~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G  155 (276)
T 3no2_A           80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFE--TGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G  155 (276)
T ss_dssp             EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEEC--CSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEecc--CCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C
Confidence            89999999999999887 777777775 33332221111  1100111245667889999999985 68999999998 8


Q ss_pred             eEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEE
Q 001295          976 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEF 1055 (1106)
Q Consensus       976 ~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l 1055 (1106)
                      +.+..+..   ...+.++.+.++|.++++++.++.|..+|..+|+.+.++.... .+ +  ..-..+..+...+ +|+++
T Consensus       156 ~~~w~~~~---~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~-~~-~--~~l~~~~~~~~~~-~G~i~  227 (276)
T 3no2_A          156 QLLNSVKL---SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNAND-IE-G--VQLFFVAQLFPLQ-NGGLY  227 (276)
T ss_dssp             CEEEEEEC---SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGG-SB-S--CCCSEEEEEEECT-TSCEE
T ss_pred             CEEEEEEC---CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCC-CC-C--ccccccccceEcC-CCCEE
Confidence            88877763   2456778889999999999888899999999999988876211 11 1  0112344677777 68888


Q ss_pred             EEEeCC--------CcEEEEee-cCCCCccCCCCCCCCCCCCC
Q 001295         1056 ALGLSD--------GGVHVFEP-LESEGKWGVPPPVDNGSTSS 1089 (1106)
Q Consensus      1056 ~t~~~D--------g~v~vW~~-~~~~~~~~~~~~~~~~~~~~ 1089 (1106)
                      ++....        +..++.++ .+++-.|......+-|.+++
T Consensus       228 v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~  270 (276)
T 3no2_A          228 ICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMIST  270 (276)
T ss_dssp             EEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCE
T ss_pred             EEeccCccccccccCCceEEEECCCCCEEEEecCcccccceee
Confidence            876421        24467777 57777788766666665554

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.54  E-value=1.2e-08  Score=126.36  Aligned_cols=606  Identities=11%  Similarity=0.104  Sum_probs=322.3

Q ss_pred             CCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEE
Q 001295          350 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV  429 (1106)
Q Consensus       350 ~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las  429 (1106)
                      ...|+++.-..+|.  |-.|+.+| +..||-.+        |+.+.... ... .  ...-....|.++...++|..|-.
T Consensus        18 ~n~V~~I~qD~~G~--lWigT~~G-L~ryDG~~--------f~~~~~~~-~~~-~--~~~l~~n~I~~i~~d~~g~~lWi   82 (781)
T 3v9f_A           18 NNYVLSITQDKQGF--LWFATEEG-LNKFDGTR--------FITYYKEE-QSS-S--VQSITGNELNEVYTDPVQPVIWI   82 (781)
T ss_dssp             CSBEEEEEECTTSC--EEEEESSC-EEEECSSS--------EEEECCCS-SCS-S--SCCCSCSCEEEEEECSSSSEEEE
T ss_pred             cCEeEEEEECCCCC--EEEccCCc-CccccCCc--------eEEEEcCC-CCC-c--cccccccccceEEEcCCCCEEEE
Confidence            46899999999997  44556655 66677432        12121100 000 0  00011346999999988884555


Q ss_pred             EeCCCeEEEEEccCCceeeeeee-ecc---ccCCeeEEEEcC--CCCceEEEEecCCCcEEEEeCCCCceeEEEec----
Q 001295          430 AYSRHIVQIYSYHGGDEVRQHLE-IDA---HVGGVNDIAFSH--PNKQLCVITCGDDKTIKVWDATNGAKQYIFEG----  499 (1106)
Q Consensus       430 ~~~d~~v~iwd~~~~~~~~~~~~-l~~---h~~~V~~~~~s~--d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----  499 (1106)
                      |+.++-+..||..+++....... ...   ....|.++....  ++.   +..+..++-|..+|..+++.. .+..    
T Consensus        83 gt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~-~~~~~~~~  158 (781)
T 3v9f_A           83 ATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFT-HYNKSTVP  158 (781)
T ss_dssp             EESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEE-EESTTTCT
T ss_pred             EeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEE-eeccCccc
Confidence            77774599999987653221000 000   123688888877  665   334443456889998776543 3321    


Q ss_pred             --cCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCC
Q 001295          500 --HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT  577 (1106)
Q Consensus       500 --h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~  577 (1106)
                        ....|.++..  +.++ .|..++.++-|..||..+.... .+.....          ..   .......+.++...++
T Consensus       159 ~l~~~~i~~i~~--d~~g-~lwigt~~~Gl~~~~~~~~~~~-~~~~~~~----------~~---~~l~~~~i~~i~~d~~  221 (781)
T 3v9f_A          159 ALPSEQTWTATE--AEDG-KLYIGHVEGGLSILSLNDKSVK-HFVHDPQ----------NP---NSLPGNDVRCIYKDTN  221 (781)
T ss_dssp             TCSCCCEEEEEE--EETT-EEEEEETTTEEEEEETTTTEEE-EECC---------------------CCSSEEEEEECTT
T ss_pred             CCCccceEEEEE--CCCC-CEEEEecCCCeEEEcCCCCceE-eeecCCC----------Cc---ccCCCCceeEEEEcCC
Confidence              1245777764  3343 4555666656888887653221 1110000          00   0000113444444555


Q ss_pred             CCEEEEEECCCeEEEEECCCcceeEEEccC-----CCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhccc
Q 001295          578 KNRFLAAGDDFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL  652 (1106)
Q Consensus       578 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  652 (1106)
                      +. |..++.+ -|.+||..+++........     -....|.++...++|.+. +|+..+.|.+++..++ .. ..+...
T Consensus       222 g~-lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~~~-~~-~~~~~~  296 (781)
T 3v9f_A          222 GN-IWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLW-IATELNGIMILDLQQN-QF-LLPEQI  296 (781)
T ss_dssp             CC-EEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEE-EEESSSCEEEEETTCC----------
T ss_pred             CC-EEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEE-EEeCCCCeEEECCCCC-ee-eeeecc
Confidence            54 4445555 6899998776543222111     112457888888877654 5666567888888665 21 111100


Q ss_pred             ccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCc--cccCCCCccccccCCCceeeEecCCCCCCc
Q 001295          653 AYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDV--RSLADVKPRITEESNDKSKVWKLTELSEPN  730 (1106)
Q Consensus       653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~  730 (1106)
                      ............ .+.                            ...+  ........+-.|..++-+..++.....   
T Consensus       297 ~f~~~~~~~~~~-~l~----------------------------~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~---  344 (781)
T 3v9f_A          297 RFEFIREGDNNY-SLS----------------------------NASARYIFQDSFNNIWIGTWGGGINFISNAPPT---  344 (781)
T ss_dssp             -CEEECBCSSTT-SBS----------------------------SSCEEEEEECSSCCEEEEEBSSCEEEECSSCCS---
T ss_pred             ccccccCCCCCC-CCC----------------------------CCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCc---
Confidence            000000000000 000                            0000  001112334455555666666654321   


Q ss_pred             cceeccc------CccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCcccccc
Q 001295          731 QCRSLRL------PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV  804 (1106)
Q Consensus       731 ~~~~~~~------~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  804 (1106)
                       +..+..      ........|.++...++|. |..++.++.+..|+.......            .+.. .        
T Consensus       345 -~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~------------~~~~-~--------  401 (781)
T 3v9f_A          345 -FHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAI------------YNKE-N--------  401 (781)
T ss_dssp             -CEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEE------------CC------------
T ss_pred             -ceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEE------------EccC-C--------
Confidence             111110      1112346789999988887 455665555777765432111            0000 0        


Q ss_pred             CCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeec--CCCCCeeEEEEecCCCceEEEeeCCCcEEEEEee
Q 001295          805 TDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFM--PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR  882 (1106)
Q Consensus       805 ~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~--~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~  882 (1106)
                       .......|.+++..+++.+.+...++.|..++..+++......  .....|.++...+ ++.+.+ |+. +-|..||..
T Consensus       402 -~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lwi-gt~-~Gl~~~~~~  477 (781)
T 3v9f_A          402 -RELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK-NKKIWI-GTH-AGVFVIDLA  477 (781)
T ss_dssp             ---CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT-TSEEEE-EET-TEEEEEESS
T ss_pred             -CCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC-CCCEEE-EEC-CceEEEeCC
Confidence             0014567899999888887664446789999987765433221  2345789998887 666554 455 458889987


Q ss_pred             cceEEEEecCc-----ccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCc
Q 001295          883 VDEVKSKLKGH-----SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI  957 (1106)
Q Consensus       883 ~~~~~~~l~~h-----~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~  957 (1106)
                      +++........     ...|.++...++|.+.+....+| |..|+..+.+..   ......+  .....|.++...++|.
T Consensus       478 ~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~---~~~~~~~--l~~~~i~~i~~d~~g~  551 (781)
T 3v9f_A          478 SKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVR---KFNQYEG--FCSNTINQIYRSSKGQ  551 (781)
T ss_dssp             SSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEE---EECTTTT--CSCSCEEEEEECTTSC
T ss_pred             CCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEE---EccCCCC--CCCCeeEEEEECCCCC
Confidence            76543322222     46789999998888776554455 777887664321   1111111  1224678899999999


Q ss_pred             EEEEEeCCeEEEEecCCceEeeecccCC-CCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCC
Q 001295          958 HFLVVHETQLAIFETTKLECVKQWVPRE-SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVS 1036 (1106)
Q Consensus       958 ~l~~~~d~~v~i~d~~~~~~~~~~~~~~-h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 1036 (1106)
                      +.+++..|-+..||..+++...--...+ ....|.++...++|.+.++ +.+| |..|+..+++.. .+....-++..  
T Consensus       552 lWi~T~~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~-t~~G-l~~~~~~~~~~~-~~~~~dGl~~~--  626 (781)
T 3v9f_A          552 MWLATGEGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWAS-TNTG-ISCYITSKKCFY-TYDHSNNIPQG--  626 (781)
T ss_dssp             EEEEETTEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEE-CSSC-EEEEETTTTEEE-EECGGGTCCSS--
T ss_pred             EEEEECCCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEE-cCCc-eEEEECCCCceE-EecccCCcccc--
Confidence            7777664444899988765432211111 1456889999998876654 4455 777888776543 33322222221  


Q ss_pred             CCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecC
Q 001295         1037 SSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1071 (1106)
Q Consensus      1037 ~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~ 1071 (1106)
                        ....-++...+ ||. |..|+.+| +..++...
T Consensus       627 --~f~~~~~~~~~-~G~-l~~g~~~G-l~~f~p~~  656 (781)
T 3v9f_A          627 --SFISGCVTKDH-NGL-IYFGSING-LCFFNPDI  656 (781)
T ss_dssp             --CEEEEEEEECT-TSC-EEEEETTE-EEEECSCC
T ss_pred             --ccccCceEECC-CCE-EEEECCCc-eEEEChhh
Confidence              12222444444 565 44566677 55667554

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.53  E-value=2.5e-11  Score=131.38  Aligned_cols=281  Identities=11%  Similarity=0.108  Sum_probs=191.3

Q ss_pred             cccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecC
Q 001295          742 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  821 (1106)
Q Consensus       742 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~  821 (1106)
                      ....+.+++++++|+.+++...++.|.+|+..                       +.........  ....+.+++++++
T Consensus        13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-----------------------~~~~~~~~~~--~~~~~~~i~~~~~   67 (299)
T 2z2n_A           13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-----------------------GKITEYPLPT--PDAKVMCLTISSD   67 (299)
T ss_dssp             SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-----------------------CCEEEEECSS--TTCCEEEEEECTT
T ss_pred             cCCCccceEECCCCCEEEEecCCCcEEEEcCC-----------------------CCeEEecCCc--ccCceeeEEECCC
Confidence            45678999999999977766667888888653                       1111111111  3466889999999


Q ss_pred             CCEEEEEe-CCeEEEEEcCCCcee-eeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEE-ecCcccCee
Q 001295          822 DSYVMSAS-GGKISLFNMMTFKTM-ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK-LKGHSKRIT  898 (1106)
Q Consensus       822 ~~~l~~~s-dg~i~vwd~~~~~~~-~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~-l~~h~~~V~  898 (1106)
                      |.++++.. ++.|..||.. ++.. ..+......+..+++++ +++++++...++.|.+||. +++.... +..+...+.
T Consensus        68 g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~  144 (299)
T 2z2n_A           68 GEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPS  144 (299)
T ss_dssp             SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEE
T ss_pred             CCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCc
Confidence            99888776 7889999986 3321 22223455789999999 7888887777889999998 5554332 333456789


Q ss_pred             EEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeEEEEecCCceE
Q 001295          899 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC  977 (1106)
Q Consensus       899 ~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v~i~d~~~~~~  977 (1106)
                      ++++.++|.++++...++.|..|+. +++...   .... ..   ...+..++++++|+++++. .++.|.+||. +++.
T Consensus       145 ~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~-~~---~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~  215 (299)
T 2z2n_A          145 FITLGSDNALWFTENQNNAIGRITE-SGDITE---FKIP-TP---ASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI  215 (299)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECT-TCCEEE---EECS-ST---TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE
T ss_pred             eEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE---eeCC-CC---CCcceeEEECCCCCEEEEccCCceEEEECC-CCcE
Confidence            9999999998888877889999998 543221   1111 11   1256789999999977765 4789999999 6654


Q ss_pred             eeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEE
Q 001295          978 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1057 (1106)
Q Consensus       978 ~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t 1057 (1106)
                      .. +....+...+.+++++++|+++++...++.|.+||. +++.. .+.    .+.+  ..  .+..+++ + ++++.++
T Consensus       216 ~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~----~~~~--~~--~~~~i~~-~-~g~l~v~  282 (299)
T 2z2n_A          216 TE-FKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIE-EYP----IQIK--SA--EPHGICF-D-GETIWFA  282 (299)
T ss_dssp             EE-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEE-EEE----CSSS--SC--CEEEEEE-C-SSCEEEE
T ss_pred             EE-EECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceE-EEe----CCCC--CC--ccceEEe-c-CCCEEEE
Confidence            33 333344678999999999997776657889999998 45433 332    1211  11  2347777 5 6777666


Q ss_pred             EeCCCcEEEEeecCCC
Q 001295         1058 GLSDGGVHVFEPLESE 1073 (1106)
Q Consensus      1058 ~~~Dg~v~vW~~~~~~ 1073 (1106)
                      .. .+.|..++..+.+
T Consensus       283 ~~-~~~l~~~~~~~~~  297 (299)
T 2z2n_A          283 ME-CDKIGKLTLIKDN  297 (299)
T ss_dssp             ET-TTEEEEEEEC---
T ss_pred             ec-CCcEEEEEcCccc
Confidence            55 6778888877643

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.53  E-value=9.8e-12  Score=134.92  Aligned_cols=204  Identities=11%  Similarity=0.089  Sum_probs=141.6

Q ss_pred             eeEEEEecCCCEEEEEe---CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeec-ceEEE
Q 001295          813 VPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVKS  888 (1106)
Q Consensus       813 v~~l~~s~~~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~-~~~~~  888 (1106)
                      ...++++|||+++.++.   ++.|.++|+.+++.+.++....  . ...+ |.+.+.+++.+.||.+.+.++.+ ++...
T Consensus       139 P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~-P~g~~~~~~~~~DG~~~~v~~~~~g~v~~  214 (386)
T 3sjl_D          139 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIF-PTAPDTFFMHCRDGSLAKVAFGTEGTPEI  214 (386)
T ss_dssp             GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEE-EEETTEEEEEETTSCEEEEECCSSSCCEE
T ss_pred             CceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceee-cCCCceeEEECCCCCEEEEECCCCCeEEE
Confidence            44688999999888775   4789999999999988886432  1 2233 42566777788899998888876 55433


Q ss_pred             EecCcc----cCee-EEEEe-cCCCEEEEEcCCCcEEEEeCCCcccccceeeccc------CCCCCCCCCCceEEEcCCC
Q 001295          889 KLKGHS----KRIT-GLAFS-HALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP------TGRTPTAQSDTRVQFHQDQ  956 (1106)
Q Consensus       889 ~l~~h~----~~V~-~l~~s-~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~------~~~~~~~~~i~~~~~s~dg  956 (1106)
                      ....+.    ..+. ...|. ++|++++ .+.+|+|.+.|+.+........+...      .+-.  ......+++++++
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~--p~g~q~~a~~~~~  291 (386)
T 3sjl_D          215 THTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWR--PGGWQQVAYHRAL  291 (386)
T ss_dssp             EECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEE--ECSSSCEEEETTT
T ss_pred             eecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceecccccccccccc--CCCcceeeECCCC
Confidence            221121    2222 24664 6775555 56689999999976542111111100      1111  1244568889999


Q ss_pred             cEEEEE-e----------CCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCC-EEEEEE-cCCeEEEEEcCCceeEE
Q 001295          957 IHFLVV-H----------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRC 1023 (1106)
Q Consensus       957 ~~l~~~-~----------d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~-~l~t~s-~Dg~i~vwd~~~~~~~~ 1023 (1106)
                      +.+.+. .          .+.|.++|+.+++.++.+...   ..+.+|+|++|++ +|++++ .++.|.|+|..+++.+.
T Consensus       292 ~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg---~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~  368 (386)
T 3sjl_D          292 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG---HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELR  368 (386)
T ss_dssp             TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE---EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEE
T ss_pred             CeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC---CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEE
Confidence            988884 2          147999999999999998763   4788999999997 676655 48999999999999999


Q ss_pred             eeC
Q 001295         1024 RIN 1026 (1106)
Q Consensus      1024 ~~~ 1026 (1106)
                      ++.
T Consensus       369 ~i~  371 (386)
T 3sjl_D          369 SVN  371 (386)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            987

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.53  E-value=2.1e-12  Score=141.52  Aligned_cols=274  Identities=9%  Similarity=0.017  Sum_probs=185.0

Q ss_pred             cCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCcccc
Q 001295          713 ESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLW  792 (1106)
Q Consensus       713 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w  792 (1106)
                      ..++.|.++|..+.+......... ...........+++. +++.+++...++.|.+||..                   
T Consensus        14 ~~~~~l~~~d~~t~~~~~~i~~~~-n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~-------------------   72 (328)
T 3dsm_A           14 YSNATLSYYDPATCEVENEVFYRA-NGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDIN-------------------   72 (328)
T ss_dssp             SCCBEEEEEETTTTEEECSHHHHH-HSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETT-------------------
T ss_pred             CCCceEEEEECCCCEEhhhhHhhh-cCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECc-------------------
Confidence            347889999987644322111000 001112345667774 44555555567889888765                   


Q ss_pred             CCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCC-----CCeeEEEEecCCCce
Q 001295          793 QPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-----PAATFLAFHPQDNNI  866 (1106)
Q Consensus       793 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~-----~~v~~l~~s~~d~~~  866 (1106)
                         +++.+... .   .......++++++++..++.. ++.|.+||..+++....+....     .....+++ . ++++
T Consensus        73 ---t~~~~~~i-~---~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~l  143 (328)
T 3dsm_A           73 ---TFKEVGRI-T---GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYV  143 (328)
T ss_dssp             ---TCCEEEEE-E---CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEE
T ss_pred             ---ccEEEEEc-C---CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEE
Confidence               33332221 1   345678999999996555553 7999999999988877665332     14567777 4 6666


Q ss_pred             EEEee-CCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCC----------CcEEEEeCCCcccccceeec
Q 001295          867 IAIGM-DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD----------SQLCVWSSDGWEKQKNRFLQ  935 (1106)
Q Consensus       867 la~g~-~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D----------g~i~vwd~~~~~~~~~~~~~  935 (1106)
                      +++.. .++.|.+||..+++.+..+... .....++++++|++++++..+          +.|.+||..+++...  .+.
T Consensus       144 yv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~--~~~  220 (328)
T 3dsm_A          144 YVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK--QFK  220 (328)
T ss_dssp             EEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE--EEE
T ss_pred             EEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEE--EEe
Confidence            66654 4889999999999988877653 345789999999988777655          789999998865432  122


Q ss_pred             ccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCC-CEEEEE----EcCCe
Q 001295          936 IPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDS-QLVYAC----FLDAT 1010 (1106)
Q Consensus       936 ~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~-~~l~t~----s~Dg~ 1010 (1106)
                      ...+     ..+..++|+||++.|.++.. .|.+||..+++.........+......++++|++ .+.++.    ..+++
T Consensus       221 ~~~g-----~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~  294 (328)
T 3dsm_A          221 FKLG-----DWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGI  294 (328)
T ss_dssp             CCTT-----CCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEE
T ss_pred             cCCC-----CCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCE
Confidence            2222     24689999999999888654 9999999988764322111224678999999954 445555    56899


Q ss_pred             EEEEEcCCceeEEeeC
Q 001295         1011 VCVFSAANLKLRCRIN 1026 (1106)
Q Consensus      1011 i~vwd~~~~~~~~~~~ 1026 (1106)
                      |.+||.+ |+.+.++.
T Consensus       295 V~v~d~~-g~~~~~i~  309 (328)
T 3dsm_A          295 VYRYSPQ-GKLIDEFY  309 (328)
T ss_dssp             EEEECTT-CCEEEEEE
T ss_pred             EEEECCC-CCEEEEEE
Confidence            9999998 88888776

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.53  E-value=3.3e-12  Score=156.55  Aligned_cols=245  Identities=10%  Similarity=0.051  Sum_probs=169.8

Q ss_pred             cccceEEEEEcCCCceEEEeecCc-----eEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEE
Q 001295          742 RATKISRLIFTNSGNAILALASNA-----IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF  816 (1106)
Q Consensus       742 ~~~~i~~~~~s~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l  816 (1106)
                      +...+..++|||||++|+.+..++     .|++||+.                      +|......+    ....+..+
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~----------------------tg~~~~~~~----~~~~~~~~  176 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD----------------------GAKELPDVL----ERVKFSCM  176 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT----------------------TTEEEEEEE----EEECSCCE
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC----------------------CCCCCcccc----cCcccceE
Confidence            444688999999999998777643     78887765                      333322111    11225679


Q ss_pred             EEecCCCEEEEEe-CCe----------------EEEEEcCCCce----eeeecCCCCCeeEEEEecCCCceEEEeeC---
Q 001295          817 ALSKNDSYVMSAS-GGK----------------ISLFNMMTFKT----MATFMPPPPAATFLAFHPQDNNIIAIGMD---  872 (1106)
Q Consensus       817 ~~s~~~~~l~~~s-dg~----------------i~vwd~~~~~~----~~~~~~~~~~v~~l~~s~~d~~~la~g~~---  872 (1106)
                      +|+|||+.|+.++ ++.                |++|++.++..    +.....+...+..+.||| |+++|+.++.   
T Consensus       177 ~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~  255 (710)
T 2xdw_A          177 AWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGC  255 (710)
T ss_dssp             EECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSS
T ss_pred             EEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC-CCCEEEEEEEccC
Confidence            9999999999887 544                99999988763    222233455678999999 8888887765   


Q ss_pred             --CCcEEEEEeec------ce-EEEEecCcccCeeEEEEecCCCEEEEEcCC----CcEEEEeCCCcccccceeecccCC
Q 001295          873 --DSSIQIYNVRV------DE-VKSKLKGHSKRITGLAFSHALNVLVSSGAD----SQLCVWSSDGWEKQKNRFLQIPTG  939 (1106)
Q Consensus       873 --dg~v~iwd~~~------~~-~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D----g~i~vwd~~~~~~~~~~~~~~~~~  939 (1106)
                        +..|++||+.+      +. ....+..|...+.. .|++||+.|+..+.+    +.|.+|++.+++......+..  .
T Consensus       256 ~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~--~  332 (710)
T 2xdw_A          256 DPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVP--E  332 (710)
T ss_dssp             SSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC--C
T ss_pred             CCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccC--C
Confidence              56899999987      53 45667777776665 588999988776653    359999998764322222211  1


Q ss_pred             CCCCCCCCceEEEcCCCcEEEE-EeCC--eEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEE----cCCeEE
Q 001295          940 RTPTAQSDTRVQFHQDQIHFLV-VHET--QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF----LDATVC 1012 (1106)
Q Consensus       940 ~~~~~~~i~~~~~s~dg~~l~~-~~d~--~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s----~Dg~i~ 1012 (1106)
                      ..  ...+..++|++++.++++ ..++  .|.+|++.+++.+..+.  .+...|..++++|++..|+...    ..++|+
T Consensus       333 ~~--~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~--~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~  408 (710)
T 2xdw_A          333 HE--KDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFP--LEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIY  408 (710)
T ss_dssp             CS--SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEEC--CCSSEEEEEECCTTCSEEEEEEECSSCCCEEE
T ss_pred             CC--CCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecC--CCCceEEEEecCCCCCEEEEEEeCCCCCCEEE
Confidence            11  024667889877777777 4666  46778887777666655  4467789999999998766443    347899


Q ss_pred             EEEcCCce
Q 001295         1013 VFSAANLK 1020 (1106)
Q Consensus      1013 vwd~~~~~ 1020 (1106)
                      +||+.+++
T Consensus       409 ~~d~~tg~  416 (710)
T 2xdw_A          409 HCDLTKEE  416 (710)
T ss_dssp             EEETTSSS
T ss_pred             EEECCCCc
Confidence            99999887

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.52  E-value=5.3e-11  Score=131.87  Aligned_cols=203  Identities=9%  Similarity=0.007  Sum_probs=140.4

Q ss_pred             eEEEEecCCCEEEEEe---CCeEEEEEcCCCceeee-ecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEE
Q 001295          814 PCFALSKNDSYVMSAS---GGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK  889 (1106)
Q Consensus       814 ~~l~~s~~~~~l~~~s---dg~i~vwd~~~~~~~~~-~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~  889 (1106)
                      ..++++|||++|++++   ++.|.++| .+++.+.. +....    ++.+.|++.+.+++.+.||.+.++|. +++....
T Consensus       128 ~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~  201 (373)
T 2mad_H          128 WMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA  201 (373)
T ss_pred             cceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE
Confidence            4688999999888875   36799999 99888877 65322    24556645567777888999999999 8776633


Q ss_pred             ec-----CcccC-eeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCC----CCCCCCCCceEEEcCCCcEE
Q 001295          890 LK-----GHSKR-ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTG----RTPTAQSDTRVQFHQDQIHF  959 (1106)
Q Consensus       890 l~-----~h~~~-V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~s~dg~~l  959 (1106)
                      ..     ....+ .....+.+++..++..+.++.+.+.|+.+........+.....    ..........++++||++.+
T Consensus       202 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~l  281 (373)
T 2mad_H          202 GLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGI  281 (373)
T ss_pred             EeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEE
Confidence            22     11122 2335677777665555578899999987643211111111110    00001223448899999988


Q ss_pred             EEEe-----------CCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCC-EEEEEE-cCCeEEEEEcCCceeEEee
Q 001295          960 LVVH-----------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRCRI 1025 (1106)
Q Consensus       960 ~~~~-----------d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~-~l~t~s-~Dg~i~vwd~~~~~~~~~~ 1025 (1106)
                      .++.           .+.|.++|+.+++.+..+..   .....+++|+|||+ +|+++. .++.|.|||..+++.+.++
T Consensus       282 yV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~---g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          282 YLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL---GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             EEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC---CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence            7742           25799999999999998864   33689999999999 677777 4899999999999999874

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.51  E-value=3.1e-13  Score=165.05  Aligned_cols=241  Identities=13%  Similarity=0.066  Sum_probs=162.1

Q ss_pred             CCCCeeEEEEecCCCEEEEEe------CCeEEEEEcCCCcee-eeecCCCCCeeEEEEecCCCceEEEeeCCCc------
Q 001295          809 PEEAVPCFALSKNDSYVMSAS------GGKISLFNMMTFKTM-ATFMPPPPAATFLAFHPQDNNIIAIGMDDSS------  875 (1106)
Q Consensus       809 ~~~~v~~l~~s~~~~~l~~~s------dg~i~vwd~~~~~~~-~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~------  875 (1106)
                      |...+..++|||||++||.+.      +.+|++||+.+++.+ .... .......++|+| |++.|+.++.|..      
T Consensus       119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~-~~~~~~~~~wsp-Dg~~l~~~~~d~~~~~~~~  196 (695)
T 2bkl_A          119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVI-EGGKYATPKWTP-DSKGFYYEWLPTDPSIKVD  196 (695)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCB-SCCTTCCCEECT-TSSEEEEEECCCCTTSCGG
T ss_pred             CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCccc-CcccccceEEec-CCCEEEEEEecCCCCCccc
Confidence            455688999999999999553      257999999998865 2111 111126899999 8999998888776      


Q ss_pred             -------EEEEEeecce----EEEEecCcccCeeEEEEecCCCEEEEEcCCC----cEEEEeCCCcccccceeecccCCC
Q 001295          876 -------IQIYNVRVDE----VKSKLKGHSKRITGLAFSHALNVLVSSGADS----QLCVWSSDGWEKQKNRFLQIPTGR  940 (1106)
Q Consensus       876 -------v~iwd~~~~~----~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg----~i~vwd~~~~~~~~~~~~~~~~~~  940 (1106)
                             |++|++.+++    ++.....|...+.++.|||||++|+.++.++    .|.+|+..+++.   ..+....  
T Consensus       197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~---~~l~~~~--  271 (695)
T 2bkl_A          197 ERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF---RLLVKGV--  271 (695)
T ss_dssp             GGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC---EEEEECS--
T ss_pred             cCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce---EEeecCC--
Confidence                   9999998765    4444455667889999999999998887666    677776554321   1222111  


Q ss_pred             CCCCCCCceEEEcCCCcEEEE-Ee----CCeEEEEecCCceE--eeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEE
Q 001295          941 TPTAQSDTRVQFHQDQIHFLV-VH----ETQLAIFETTKLEC--VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCV 1013 (1106)
Q Consensus       941 ~~~~~~i~~~~~s~dg~~l~~-~~----d~~v~i~d~~~~~~--~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~v 1013 (1106)
                          ..+....+ ++|. ++. +.    ++.|.+||+.++..  ...+....+...+..++|+ ++.++++...|+..+|
T Consensus       272 ----~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l  344 (695)
T 2bkl_A          272 ----GAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEV  344 (695)
T ss_dssp             ----SCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEE
T ss_pred             ----CceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEE
Confidence                13455556 6776 554 43    47899999987653  1223221224568889998 7788899999999888


Q ss_pred             EEcC-CceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEE-EEe---CCCcEEEEeecCCC
Q 001295         1014 FSAA-NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFA-LGL---SDGGVHVFEPLESE 1073 (1106)
Q Consensus      1014 wd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~-t~~---~Dg~v~vW~~~~~~ 1073 (1106)
                      |.++ +++....+.    ++.   ...+.  .++++| |++.++ +.+   ..++|++||+.+++
T Consensus       345 ~~~~~~g~~~~~l~----~~~---~~~v~--~~~~s~-d~~~l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          345 RVATLKGKPVRTVQ----LPG---VGAAS--NLMGLE-DLDDAYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             EEEETTCCEEEECC----CSS---SSEEC--CCBSCT-TCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             EEEeCCCCeeEEec----CCC---CeEEE--EeecCC-CCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            8765 455555444    221   11133  567778 566655 332   34789999998877

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.51  E-value=5.1e-11  Score=128.96  Aligned_cols=237  Identities=9%  Similarity=0.061  Sum_probs=164.2

Q ss_pred             cceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCC
Q 001295          744 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS  823 (1106)
Q Consensus       744 ~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~  823 (1106)
                      ..+.++++++++..+++...++.|..|+...                       ......+..  ....+..++++++++
T Consensus        57 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-----------------------~~~~~~~~~--~~~~~~~i~~~~~g~  111 (299)
T 2z2n_A           57 AKVMCLTISSDGEVWFTENAANKIGRITKKG-----------------------IIKEYTLPN--PDSAPYGITEGPNGD  111 (299)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTS-----------------------CEEEEECSS--TTCCEEEEEECTTSC
T ss_pred             CceeeEEECCCCCEEEeCCCCCeEEEECCCC-----------------------cEEEEeCCC--cCCCceeeEECCCCC
Confidence            4577899999998777766678888876431                       111100111  345688999999998


Q ss_pred             EEEEEe-CCeEEEEEcCCCceeee-ecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEE-ecCcccCeeEE
Q 001295          824 YVMSAS-GGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK-LKGHSKRITGL  900 (1106)
Q Consensus       824 ~l~~~s-dg~i~vwd~~~~~~~~~-~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~-l~~h~~~V~~l  900 (1106)
                      ++++.. ++.|.+||. +++.... .......+..+++++ +++++++...++.|..||. +++.... +..+...+.++
T Consensus       112 l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i  188 (299)
T 2z2n_A          112 IWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGS-DNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGI  188 (299)
T ss_dssp             EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEE
T ss_pred             EEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcC-CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeE
Confidence            888776 689999998 5544322 233455789999999 7888887777889999998 6665432 33445678899


Q ss_pred             EEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeEEEEecCCceEee
Q 001295          901 AFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVK  979 (1106)
Q Consensus       901 ~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v~i~d~~~~~~~~  979 (1106)
                      ++.++|.++++...++.|.+|+. +++...   .... ..   ...+..++++++|+.+++. .++.|..||. +++. .
T Consensus       189 ~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~-~~---~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~  258 (299)
T 2z2n_A          189 TKGNDDALWFVEIIGNKIGRITT-SGEITE---FKIP-TP---NARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-E  258 (299)
T ss_dssp             EECTTSSEEEEETTTTEEEEECT-TCCEEE---EECS-ST---TCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-E
T ss_pred             EECCCCCEEEEccCCceEEEECC-CCcEEE---EECC-CC---CCCceeEEECCCCCEEEeccCCceEEEECC-CCce-E
Confidence            99999998888777889999998 544211   1111 11   1357899999999977765 6789999998 4543 3


Q ss_pred             ecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCce
Q 001295          980 QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1020 (1106)
Q Consensus       980 ~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~ 1020 (1106)
                      .+....+...+.++++ ++|.+.++.+ .+.|..++..+++
T Consensus       259 ~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~  297 (299)
T 2z2n_A          259 EYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKDN  297 (299)
T ss_dssp             EEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred             EEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence            3433344678999999 8888777654 5677777877654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.51  E-value=2.1e-11  Score=134.39  Aligned_cols=244  Identities=13%  Similarity=0.072  Sum_probs=162.7

Q ss_pred             ccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCE
Q 001295          347 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  426 (1106)
Q Consensus       347 ~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~  426 (1106)
                      ..+...+.+++|+|+|+ |++++..++.|.+||..+++....                   ...+...+.+++|+|+|++
T Consensus        41 ~~~~~~~~~~~~~~~g~-l~~~~~~~~~i~~~d~~~~~~~~~-------------------~~~~~~~~~~i~~~~dg~l  100 (333)
T 2dg1_A           41 SKKGLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRP-------------------FVSHKANPAAIKIHKDGRL  100 (333)
T ss_dssp             ESSCCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEE-------------------EECSSSSEEEEEECTTSCE
T ss_pred             eccCccccCcEECCCCC-EEEEECCCCEEEEEeCCCCcEEEE-------------------eeCCCCCcceEEECCCCcE
Confidence            34677889999999999 688888889999999988765431                   1234568999999999998


Q ss_pred             EEEEeCC----CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecC------CCcEEEEeCCCCceeEE
Q 001295          427 FGVAYSR----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD------DKTIKVWDATNGAKQYI  496 (1106)
Q Consensus       427 las~~~d----~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~------d~~i~iwd~~~~~~~~~  496 (1106)
                      +++...+    +.|.+||..++...... .-..+...+.+++++|+|+  ++++...      .+.|..||..+++... 
T Consensus       101 ~v~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-  176 (333)
T 2dg1_A          101 FVCYLGDFKSTGGIFAATENGDNLQDII-EDLSTAYCIDDMVFDSKGG--FYFTDFRGYSTNPLGGVYYVSPDFRTVTP-  176 (333)
T ss_dssp             EEEECTTSSSCCEEEEECTTSCSCEEEE-CSSSSCCCEEEEEECTTSC--EEEEECCCBTTBCCEEEEEECTTSCCEEE-
T ss_pred             EEEeCCCCCCCceEEEEeCCCCEEEEEE-ccCccCCcccceEECCCCC--EEEEeccccccCCCceEEEEeCCCCEEEE-
Confidence            8887666    68999999887643211 1113456799999999998  5666543      3566667765555433 


Q ss_pred             EeccCCCeEEEeccccCCce-EEEEEecCCeEEEEeCCCC-CceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEE
Q 001295          497 FEGHEAPVYSVCPHHKENIQ-FIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF  574 (1106)
Q Consensus       497 ~~~h~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~  574 (1106)
                      +..+...+..++|++  +++ ++++.+.++.|.+||+.+. .....+..      .+.....+        ......+++
T Consensus       177 ~~~~~~~~~~i~~~~--dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~------~~~~~~~~--------~~~~~~i~~  240 (333)
T 2dg1_A          177 IIQNISVANGIALST--DEKVLWVTETTANRLHRIALEDDGVTIQPFGA------TIPYYFTG--------HEGPDSCCI  240 (333)
T ss_dssp             EEEEESSEEEEEECT--TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEE------EEEEECCS--------SSEEEEEEE
T ss_pred             eecCCCcccceEECC--CCCEEEEEeCCCCeEEEEEecCCCcCcccccc------eEEEecCC--------CCCCCceEE
Confidence            333445577888755  445 4455566899999998642 22211100      00000000        013445677


Q ss_pred             cCCCCEEEEEECCCeEEEEECCCcceeEEEccCC----CCCCcCeEEEccCCCEEEEEeCC
Q 001295          575 DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG----GLPASPRIRFNKDGCLLAVSTND  631 (1106)
Q Consensus       575 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----~~~~v~~v~~s~~~~~l~~~~~d  631 (1106)
                      +++|+.+++...++.|.+||. +++.+..+....    +...+.+++|+||++.|++++.+
T Consensus       241 d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          241 DSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             BTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             CCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence            777777777778899999998 566666665332    11247899999998777766655

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.51  E-value=2.9e-12  Score=136.48  Aligned_cols=238  Identities=10%  Similarity=0.047  Sum_probs=167.2

Q ss_pred             CeeEEEEecCCCEEE-EEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEE
Q 001295          812 AVPCFALSKNDSYVM-SAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK  889 (1106)
Q Consensus       812 ~v~~l~~s~~~~~l~-~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~  889 (1106)
                      ...+++++++|++++ +.. ++.|.+|+..+.........+...+.++++++ +++++++.. ++.|++||..+... ..
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~-~~  101 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQ-TV  101 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCC-EE
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceE-ee
Confidence            678999999999776 434 68999999876543322223345688999999 777666655 88999999876543 33


Q ss_pred             ec-CcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeE
Q 001295          890 LK-GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQL  967 (1106)
Q Consensus       890 l~-~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v  967 (1106)
                      +. .....+.+++++++|+++++...++.|.+|+..+....    .... ..   ...+..++++++|+++++. .++.|
T Consensus       102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~----~~~~-~~---~~~p~~i~~~~~g~l~v~~~~~~~i  173 (270)
T 1rwi_B          102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT----VLPF-TG---LNDPDGVAVDNSGNVYVTDTDNNRV  173 (270)
T ss_dssp             CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCE----ECCC-CS---CCSCCCEEECTTCCEEEEEGGGTEE
T ss_pred             eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeE----eecc-cc---CCCceeEEEeCCCCEEEEECCCCEE
Confidence            32 33367899999999998888888889999976543211    1111 11   1256899999999977764 56899


Q ss_pred             EEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEE
Q 001295          968 AIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAA 1047 (1106)
Q Consensus       968 ~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 1047 (1106)
                      .+||..+........  .+...+.+|+++++|.++++...++.|.+||..+..... ..     ..+    .-.+..+++
T Consensus       174 ~~~~~~~~~~~~~~~--~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~-----~~~----~~~p~~i~~  241 (270)
T 1rwi_B          174 VKLEAESNNQVVLPF--TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LP-----FTG----LNTPLAVAV  241 (270)
T ss_dssp             EEECTTTCCEEECCC--SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CC-----CCS----CSCEEEEEE
T ss_pred             EEEecCCCceEeecc--cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ec-----cCC----CCCceeEEE
Confidence            999998766544322  233678999999999777777778899999987654332 11     011    023458999


Q ss_pred             eCCCCCEEEEEeCCCcEEEEeecCCC
Q 001295         1048 HPQEPNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus      1048 ~~~d~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
                      ++ +|+++++...++.|++++....+
T Consensus       242 ~~-~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          242 DS-DRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             CT-TCCEEEEEGGGTEEEEECCCGGG
T ss_pred             CC-CCCEEEEECCCCEEEEEcCCCcc
Confidence            98 68888999999999999987765

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.50  E-value=3.9e-12  Score=138.02  Aligned_cols=277  Identities=9%  Similarity=0.049  Sum_probs=186.1

Q ss_pred             EEcCCCceEEEeec-----CceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCE
Q 001295          750 IFTNSGNAILALAS-----NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY  824 (1106)
Q Consensus       750 ~~s~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~  824 (1106)
                      ...|+++.+++...     ++.+.+.|..                      +++.+.....+   ..+ . ++++|||++
T Consensus        39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~----------------------t~~v~~~I~vG---~~P-~-va~spDG~~   91 (386)
T 3sjl_D           39 APAPDARRVYVNDPAHFAAVTQQFVIDGE----------------------AGRVIGMIDGG---FLP-N-PVVADDGSF   91 (386)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETT----------------------TTEEEEEEEEC---SSC-E-EEECTTSSC
T ss_pred             ccCCCCCEEEEEcCcccCCCCEEEEEECC----------------------CCeEEEEEECC---CCC-c-EEECCCCCE
Confidence            44688887777765     4677777654                      33333222111   222 3 999999998


Q ss_pred             EEEEe-----------CCeEEEEEcCCCceeeeecCCC-------CCeeEEEEecCCCceEEEeeC--CCcEEEEEeecc
Q 001295          825 VMSAS-----------GGKISLFNMMTFKTMATFMPPP-------PAATFLAFHPQDNNIIAIGMD--DSSIQIYNVRVD  884 (1106)
Q Consensus       825 l~~~s-----------dg~i~vwd~~~~~~~~~~~~~~-------~~v~~l~~s~~d~~~la~g~~--dg~v~iwd~~~~  884 (1106)
                      +++++           ++.|.+||..+++.+.++....       .....++|+| |++++.++..  ++.|.++|+.++
T Consensus        92 lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk~lyVan~~~~~~VsVID~~t~  170 (386)
T 3sjl_D           92 IAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGK  170 (386)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTT
T ss_pred             EEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC-CCCEEEEEEcCCCCeEEEEECCCC
Confidence            87764           4679999999999888774321       2466799999 8888877763  689999999999


Q ss_pred             eEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCC-cccccceeecccCCCCCCCCCC-ceEEE-cCCCcEEEE
Q 001295          885 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG-WEKQKNRFLQIPTGRTPTAQSD-TRVQF-HQDQIHFLV  961 (1106)
Q Consensus       885 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~i-~~~~~-s~dg~~l~~  961 (1106)
                      +.+.++.....   ...+....+.+++.+.||++.+.++.+ ++..... .....   .....+ ....| .++|+++.+
T Consensus       171 ~vv~tI~v~g~---~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~-~~~~~---~~~~~~~~~~~~~~~dG~~~~v  243 (386)
T 3sjl_D          171 AFKRMLDVPDC---YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH-TEVFH---PEDEFLINHPAYSQKAGRLVWP  243 (386)
T ss_dssp             EEEEEEECCSE---EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE-CCCCS---CTTSCBCSCCEEETTTTEEEEE
T ss_pred             cEEEEEECCCc---ceeecCCCceeEEECCCCCEEEEECCCCCeEEEee-cceec---cccccccccceeEcCCCcEEEE
Confidence            99988853221   233444456777888899998888876 4431111 01111   000111 22466 478988788


Q ss_pred             EeCCeEEEEecCCce--Eeeeccc--------CCCCCCeeEEEECCCCCEEEEEEc----------CCeEEEEEcCCcee
Q 001295          962 VHETQLAIFETTKLE--CVKQWVP--------RESSAPITHATFSCDSQLVYACFL----------DATVCVFSAANLKL 1021 (1106)
Q Consensus       962 ~~d~~v~i~d~~~~~--~~~~~~~--------~~h~~~v~~l~~s~d~~~l~t~s~----------Dg~i~vwd~~~~~~ 1021 (1106)
                      +.++.|.+.|..+..  .+..+..        .-....+..++++++++.|+....          ..+|.+.|+.+++.
T Consensus       244 s~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv  323 (386)
T 3sjl_D          244 TYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER  323 (386)
T ss_dssp             BTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred             eCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeE
Confidence            888999999997653  3333320        001224456788999999888753          25799999999999


Q ss_pred             EEeeCCCcccCCCCCCCCccceEEEEeCCCCC-EEEEE-eCCCcEEEEeecCCC
Q 001295         1022 RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALG-LSDGGVHVFEPLESE 1073 (1106)
Q Consensus      1022 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~-~l~t~-~~Dg~v~vW~~~~~~ 1073 (1106)
                      +.++.    ++..     .+  .+.+++ |++ +|+++ ..++.|.++|..+++
T Consensus       324 ~~~i~----vg~~-----~~--~lavs~-D~~~~ly~tn~~~~~VsViD~~t~k  365 (386)
T 3sjl_D          324 LAKFE----MGHE-----ID--SINVSQ-DEKPLLYALSTGDKTLYIHDAESGE  365 (386)
T ss_dssp             EEEEE----EEEE-----EC--EEEECS-SSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             EEEEE----CCCC-----cc--eEEECC-CCCeEEEEEcCCCCeEEEEECCCCc
Confidence            99887    2222     33  799999 565 66664 458999999999988

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.49  E-value=1.4e-12  Score=159.35  Aligned_cols=245  Identities=10%  Similarity=-0.041  Sum_probs=159.6

Q ss_pred             CCCCcEEEEEecCCCeEEEEEecc----CcEEEEecCCccee-EEeeeeeeccCcCCccccccccCCCCcCeEEEEEccC
Q 001295          349 QGSSPMSMDFHPVQQTLLLVGTNV----GDIGLWEVGSRERL-VLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  423 (1106)
Q Consensus       349 h~~~v~~~~~sp~g~~llatg~~d----g~i~iwd~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd  423 (1106)
                      |...+..++|||||++|+++.+.+    .+|++||+.+++.+ ..                  .+...  ....++||||
T Consensus       119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~------------------~~~~~--~~~~~~wspD  178 (695)
T 2bkl_A          119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD------------------VIEGG--KYATPKWTPD  178 (695)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC------------------CBSCC--TTCCCEECTT
T ss_pred             CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc------------------ccCcc--cccceEEecC
Confidence            555789999999999755444433    57999999998754 10                  01111  1267899999


Q ss_pred             CCEEEEEeCCCe-------------EEEEEccCCcee-eeeeeeccccCCeeEEEEcCCCCceEEEEecCCC----cEEE
Q 001295          424 GSLFGVAYSRHI-------------VQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK----TIKV  485 (1106)
Q Consensus       424 g~~las~~~d~~-------------v~iwd~~~~~~~-~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~----~i~i  485 (1106)
                      |+.|+.++.|..             |++|++.++... ..+.....|...+..+.|+|||+.  |+.++.++    .|++
T Consensus       179 g~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~l~~  256 (695)
T 2bkl_A          179 SKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKY--LFVYILRGWSENDVYW  256 (695)
T ss_dssp             SSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCC--EEEEEEETTTEEEEEE
T ss_pred             CCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCE--EEEEEeCCCCceEEEE
Confidence            999999988776             999999987632 122233456678999999999995  44444343    6777


Q ss_pred             EeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEe---cCCeEEEEeCCCCCc--eeEeeCC--CCeeEEEEEecCCC
Q 001295          486 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA---LDGKIKAWLYDNLGS--RVDYEAP--GRWCTTMAYSADGT  558 (1106)
Q Consensus       486 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~--~~~~~~~--~~~v~~~~~s~~~~  558 (1106)
                      ||..+++ ...+..+...+....+ +  ++.+++...   .++.|.+||+.+...  ...+..+  ...+..++++    
T Consensus       257 ~~~~~~~-~~~l~~~~~~~~~~~~-~--~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~----  328 (695)
T 2bkl_A          257 KRPGEKD-FRLLVKGVGAKYEVHA-W--KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV----  328 (695)
T ss_dssp             ECTTCSS-CEEEEECSSCCEEEEE-E--TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE----
T ss_pred             EcCCCCc-eEEeecCCCceEEEEe-c--CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE----
Confidence            7765554 4555556555655554 2  334444444   258999999877543  1222222  2334444444    


Q ss_pred             eEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECC-CcceeEEEccCCCCCCcCeEEEccCCCEEEEEeC----CCc
Q 001295          559 RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD-SVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN----DNG  633 (1106)
Q Consensus       559 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~  633 (1106)
                                        ++..+++...|+..++|.+. +++....+..+. ...+..++++|+++.++....    .++
T Consensus       329 ------------------~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~  389 (695)
T 2bkl_A          329 ------------------GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPG-VGAASNLMGLEDLDDAYYVFTSFTTPRQ  389 (695)
T ss_dssp             ------------------TTEEEEEEEETTEEEEEEEETTCCEEEECCCSS-SSEECCCBSCTTCSEEEEEEEETTEEEE
T ss_pred             ------------------CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCE
Confidence                              23357778888888888654 455555554331 235677889999987774433    468


Q ss_pred             EEEEEccCC
Q 001295          634 IKILATSDG  642 (1106)
Q Consensus       634 i~iwd~~~~  642 (1106)
                      |++||+.++
T Consensus       390 v~~~d~~~g  398 (695)
T 2bkl_A          390 IYKTSVSTG  398 (695)
T ss_dssp             EEEEETTTC
T ss_pred             EEEEECCCC
Confidence            999999876

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.48  E-value=5.5e-12  Score=134.29  Aligned_cols=239  Identities=8%  Similarity=0.026  Sum_probs=161.4

Q ss_pred             CcEEEEEecCCCeEEE-EEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEE
Q 001295          352 SPMSMDFHPVQQTLLL-VGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA  430 (1106)
Q Consensus       352 ~v~~~~~sp~g~~lla-tg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~  430 (1106)
                      ...+++++++|+ +++ +.+.++.|.+||..++....                   ....+...+.+++++++|+++++.
T Consensus        25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~-------------------~~~~~~~~p~~i~~~~~g~l~v~~   84 (270)
T 1rwi_B           25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTV-------------------LPFNGLYQPQGLAVDGAGTVYVTD   84 (270)
T ss_dssp             CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EE-------------------CCCCSCCSCCCEEECTTCCEEEEE
T ss_pred             CccceEECCCCC-EEEEccCCCCcEEEecCCCcccce-------------------EeeCCcCCcceeEECCCCCEEEEc
Confidence            889999999998 576 54677899999976554321                   012233467889999999976666


Q ss_pred             eCCCeEEEEEccCCceeeeeeeec-cccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEec
Q 001295          431 YSRHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP  509 (1106)
Q Consensus       431 ~~d~~v~iwd~~~~~~~~~~~~l~-~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~  509 (1106)
                      . ++.|.+||..+.....    +. .....+..++++++|.  ++++...++.|.+|+..+.............+.++++
T Consensus        85 ~-~~~i~~~d~~~~~~~~----~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~  157 (270)
T 1rwi_B           85 F-NNRVVTLAAGSNNQTV----LPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV  157 (270)
T ss_dssp             T-TTEEEEECTTCSCCEE----CCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred             C-CCEEEEEeCCCceEee----eecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence            5 8899999987654321    22 2335789999999998  7777777889999986655443322233345677776


Q ss_pred             cccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCe
Q 001295          510 HHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS  589 (1106)
Q Consensus       510 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  589 (1106)
                      .+  ++.++++...++.|.+||................+                     ..++++++|..+++...++.
T Consensus       158 ~~--~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p---------------------~~i~~d~~g~l~v~~~~~~~  214 (270)
T 1rwi_B          158 DN--SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAP---------------------WGIAVDEAGTVYVTEHNTNQ  214 (270)
T ss_dssp             CT--TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSE---------------------EEEEECTTCCEEEEETTTSC
T ss_pred             eC--CCCEEEEECCCCEEEEEecCCCceEeecccCCCCc---------------------eEEEECCCCCEEEEECCCCc
Confidence            54  55677777778999999987543322111111223                     34555555555666667889


Q ss_pred             EEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295          590 IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       590 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                      |.+|+........ ... .+...+.+++++++|+++++...++.|++++....
T Consensus       215 v~~~~~~~~~~~~-~~~-~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~  265 (270)
T 1rwi_B          215 VVKLLAGSTTSTV-LPF-TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH  265 (270)
T ss_dssp             EEEECTTCSCCEE-CCC-CSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred             EEEEcCCCCccee-ecc-CCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence            9999987654332 221 22245789999999998888888999999987654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.46  E-value=2.6e-08  Score=123.17  Aligned_cols=509  Identities=11%  Similarity=0.061  Sum_probs=284.4

Q ss_pred             CCcEEEEEec--CCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEE
Q 001295          351 SSPMSMDFHP--VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  428 (1106)
Q Consensus       351 ~~v~~~~~sp--~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  428 (1106)
                      ..|+++....  +|.  |-.|+.++.|..+|..+++....      ....        ...-....|.++...++|.+.+
T Consensus       115 ~~i~~i~~d~~~~g~--lwi~t~~~gl~~~~~~~~~~~~~------~~~~--------~~~l~~~~i~~i~~d~~g~lwi  178 (781)
T 3v9f_A          115 NDVTHITSSVQAGKG--LWVCTYYRGIEYLDIATGKFTHY------NKST--------VPALPSEQTWTATEAEDGKLYI  178 (781)
T ss_dssp             SCEEEEEECSSTTSE--EEEEESSSCEEEEETTTTEEEEE------STTT--------CTTCSCCCEEEEEEEETTEEEE
T ss_pred             CcceEEEecCccCCC--EEEEECCCCeeEEECCCCeEEee------ccCc--------ccCCCccceEEEEECCCCCEEE
Confidence            4688998888  776  33455456788999876543221      0000        0001234688988888887665


Q ss_pred             EEeCCCeEEEEEccCCceeeeeeee----ccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEec-----
Q 001295          429 VAYSRHIVQIYSYHGGDEVRQHLEI----DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG-----  499 (1106)
Q Consensus       429 s~~~d~~v~iwd~~~~~~~~~~~~l----~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----  499 (1106)
                       ++.++-|..||..+++........    .-....|.++...++|.  +.+. ..+ -+.+||..+++.......     
T Consensus       179 -gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~--lwig-t~~-Gl~~~d~~~~~~~~~~~~~~~~~  253 (781)
T 3v9f_A          179 -GHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGN--IWIG-TSK-GLALFNANTETFTNFHNNPGNIH  253 (781)
T ss_dssp             -EETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCC--EEEE-ETT-EEEEEETTTTEEEC---------
T ss_pred             -EecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCC--EEEE-eCC-cHheECCCCCcEEEEEcCCCccc
Confidence             555545889998876532210000    00135689999988887  4443 334 688999877654322111     


Q ss_pred             --cCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCC
Q 001295          500 --HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT  577 (1106)
Q Consensus       500 --h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~  577 (1106)
                        ....|.++..  +.+| .|..|+..+-|.++|..+.........   ....+. .+...   .+.....+.++..+.+
T Consensus       254 ~l~~~~i~~i~~--d~~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~---~f~~~~-~~~~~---~~l~~~~v~~i~~D~~  323 (781)
T 3v9f_A          254 GALSSYIFSIKQ--LKDN-KLWIATELNGIMILDLQQNQFLLPEQI---RFEFIR-EGDNN---YSLSNASARYIFQDSF  323 (781)
T ss_dssp             --CCCCEEEEEE--CTTS-EEEEEESSSCEEEEETTCC------------CEEEC-BCSST---TSBSSSCEEEEEECSS
T ss_pred             cccCceEEEEEE--CCCC-CEEEEeCCCCeEEECCCCCeeeeeecc---cccccc-CCCCC---CCCCCCeEEEEEEeCC
Confidence              2356888874  4454 466666645678888765432111000   000000 00000   0011123444555555


Q ss_pred             CCEEEEEECCCeEEEEECCCcceeEEEc-------cCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhc
Q 001295          578 KNRFLAAGDDFSIKFWDMDSVQLLTSID-------ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE  650 (1106)
Q Consensus       578 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~-------~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  650 (1106)
                      |. +-.|+.++-|..|+..++.......       ..-....|.++...++|.+. +|+.++.|..|+..++.  ...+.
T Consensus       324 g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~--~~~~~  399 (781)
T 3v9f_A          324 NN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFENGKRV--AIYNK  399 (781)
T ss_dssp             CC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEETTEEE--EECC-
T ss_pred             CC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEECCCCe--EEEcc
Confidence            54 5667767778889887654333211       00112357788888777655 56666678888865431  00000


Q ss_pred             ccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCc
Q 001295          651 NLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPN  730 (1106)
Q Consensus       651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~  730 (1106)
                      .                                                                               
T Consensus       400 ~-------------------------------------------------------------------------------  400 (781)
T 3v9f_A          400 E-------------------------------------------------------------------------------  400 (781)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             C-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             cceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCC
Q 001295          731 QCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPE  810 (1106)
Q Consensus       731 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  810 (1106)
                             +.......|.++...+++... +++.++.+..++..+                      +........ ....
T Consensus       401 -------~~~~~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~----------------------~~~~~~~~~-~~~~  449 (781)
T 3v9f_A          401 -------NRELLSNSVLCSLKDSEGNLW-FGTYLGNISYYNTRL----------------------KKFQIIELE-KNEL  449 (781)
T ss_dssp             ----------CCCSBEEEEEECTTSCEE-EEETTEEEEEECSSS----------------------CEEEECCST-TTCC
T ss_pred             -------CCCCCCcceEEEEECCCCCEE-EEeccCCEEEEcCCC----------------------CcEEEeccC-CCCC
Confidence                   000123567888888888744 456555666665432                      211111000 0135


Q ss_pred             CCeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeecCC-----CCCeeEEEEecCCCceEEEeeCCCcEEEEEeecce
Q 001295          811 EAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPP-----PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE  885 (1106)
Q Consensus       811 ~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~-----~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~  885 (1106)
                      ..|.++...+++.+.+... +.|..||..+++........     ...|.+++..+ ++++.+ |+.++-|..||..+++
T Consensus       450 ~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~  526 (781)
T 3v9f_A          450 LDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDS-EGRFWI-GTFGGGVGIYTPDMQL  526 (781)
T ss_dssp             CCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECT-TCCEEE-EESSSCEEEECTTCCE
T ss_pred             CeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcC-CCCEEE-EEcCCCEEEEeCCCCe
Confidence            6789999988887665544 67999998876554332212     35689999888 666555 5554457788877665


Q ss_pred             EEEEec-C---cccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE
Q 001295          886 VKSKLK-G---HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV  961 (1106)
Q Consensus       886 ~~~~l~-~---h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~  961 (1106)
                      .. .+. .   ....|.++...++|.+.++.. +|.|..||..+++.   .......+-.  ...+.++...++|.+.++
T Consensus       527 ~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~---~~~~~~~gl~--~~~i~~i~~d~~g~lW~~  599 (781)
T 3v9f_A          527 VR-KFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDY---QVFQRKEGLP--NTHIRAISEDKNGNIWAS  599 (781)
T ss_dssp             EE-EECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCC---EEECGGGTCS--CCCCCEEEECSSSCEEEE
T ss_pred             EE-EccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcE---EEccccCCCC--CceEEEEEECCCCCEEEE
Confidence            43 332 1   245789999988988776655 77548888776432   1222222222  246788999999987776


Q ss_pred             EeCCeEEEEecCCceEeeecccCCC-CC--CeeEEEECCCCCEEEEEEcCCeEEEEEcC
Q 001295          962 VHETQLAIFETTKLECVKQWVPRES-SA--PITHATFSCDSQLVYACFLDATVCVFSAA 1017 (1106)
Q Consensus       962 ~~d~~v~i~d~~~~~~~~~~~~~~h-~~--~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~ 1017 (1106)
                      +. +.|..|+..+.+...--...+- ..  ...++...++|++++ |+.+|.+ .++..
T Consensus       600 t~-~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~Gl~-~f~p~  655 (781)
T 3v9f_A          600 TN-TGISCYITSKKCFYTYDHSNNIPQGSFISGCVTKDHNGLIYF-GSINGLC-FFNPD  655 (781)
T ss_dssp             CS-SCEEEEETTTTEEEEECGGGTCCSSCEEEEEEEECTTSCEEE-EETTEEE-EECSC
T ss_pred             cC-CceEEEECCCCceEEecccCCccccccccCceEECCCCEEEE-ECCCceE-EEChh
Confidence            54 4578888876654332111121 12  235677788887666 5567744 45654

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.46  E-value=8.6e-11  Score=130.15  Aligned_cols=237  Identities=11%  Similarity=0.030  Sum_probs=162.1

Q ss_pred             EEEEecCCCEEEEEe-----------CCeEEEEEcCCCceeeeecCC-------CCCeeEEEEecCCCceEEEeeC--CC
Q 001295          815 CFALSKNDSYVMSAS-----------GGKISLFNMMTFKTMATFMPP-------PPAATFLAFHPQDNNIIAIGMD--DS  874 (1106)
Q Consensus       815 ~l~~s~~~~~l~~~s-----------dg~i~vwd~~~~~~~~~~~~~-------~~~v~~l~~s~~d~~~la~g~~--dg  874 (1106)
                      .++++|||++++++.           ++.|.+||..+.+.+.++...       ......++|+| |+++|+++..  ++
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~~  148 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGP  148 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECC-CCCEEEEEecCCCC
Confidence            899999999998874           467999999998887766432       12345899999 8888888764  57


Q ss_pred             cEEEEEeecceEEEE-ecCcccCeeEEEEecCC-CEEEEEcCCCcEEEEeCCCcccccceee-cccCCCCCCCCCCceEE
Q 001295          875 SIQIYNVRVDEVKSK-LKGHSKRITGLAFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFL-QIPTGRTPTAQSDTRVQ  951 (1106)
Q Consensus       875 ~v~iwd~~~~~~~~~-l~~h~~~V~~l~~s~d~-~~l~s~s~Dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~  951 (1106)
                      .|.++| .+++.+.. +....    ++.+.|++ +.+++.+.||.+.+++. +++....... ....+..   .......
T Consensus       149 ~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~---p~~~~~~  219 (373)
T 2mad_H          149 AVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQ---NLLTQPA  219 (373)
T ss_pred             eEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCc---ceeecce
Confidence            899999 99998877 54322    24555665 45667788999999999 6554311000 0001110   0112345


Q ss_pred             EcCCCcE-EEEEeCCeEEEEecCCce--EeeecccCC--------CCCCeeEEEECCCCCEEEEEEc----------CCe
Q 001295          952 FHQDQIH-FLVVHETQLAIFETTKLE--CVKQWVPRE--------SSAPITHATFSCDSQLVYACFL----------DAT 1010 (1106)
Q Consensus       952 ~s~dg~~-l~~~~d~~v~i~d~~~~~--~~~~~~~~~--------h~~~v~~l~~s~d~~~l~t~s~----------Dg~ 1010 (1106)
                      +.+++.. ++++..+.+.+.|+.+..  .+..+....        .......++++||++.|+++..          .+.
T Consensus       220 ~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~  299 (373)
T 2mad_H          220 QANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKE  299 (373)
T ss_pred             eEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCe
Confidence            6666554 444677889999987552  223332100        1223445889999998887654          357


Q ss_pred             EEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCC-EEEEEe-CCCcEEEEeecCCC
Q 001295         1011 VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGL-SDGGVHVFEPLESE 1073 (1106)
Q Consensus      1011 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~-~l~t~~-~Dg~v~vW~~~~~~ 1073 (1106)
                      |.++|..+++.+.++.    .+.       .+..+.|+| ||+ +++++. .++.|.+||+.+++
T Consensus       300 V~VID~~t~~vv~~i~----~g~-------~p~~i~~s~-Dg~~~l~v~~~~~~~V~ViD~~t~~  352 (373)
T 2mad_H          300 VTSVTGLVGQTSSQIS----LGH-------DVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGD  352 (373)
T ss_pred             EEEEECCCCEEEEEEE----CCC-------CcCeEEECC-CCCeEEEEEcCCCCeEEEEECCCCC
Confidence            9999999999998886    221       233799999 677 777777 58999999999988

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.44  E-value=1e-11  Score=131.50  Aligned_cols=212  Identities=13%  Similarity=0.092  Sum_probs=156.7

Q ss_pred             EEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCC-cCeEEEEEccCCCEEEEEeCCCeEEEEEccC
Q 001295          365 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG-VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHG  443 (1106)
Q Consensus       365 llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~-~~V~~l~~spdg~~las~~~d~~v~iwd~~~  443 (1106)
                      +|++++.++.|.+||.++|+.+.+                   +..+. ..+.+++++|+|++|+  +.++.|..||. +
T Consensus         7 ~lv~~~~~~~v~~~d~~tG~~~w~-------------------~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~   64 (276)
T 3no2_A            7 LLVGGSGWNKIAIINKDTKEIVWE-------------------YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D   64 (276)
T ss_dssp             EEEECTTCSEEEEEETTTTEEEEE-------------------EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T
T ss_pred             EEEeeCCCCEEEEEECCCCeEEEE-------------------eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C
Confidence            699999999999999999998764                   23333 4688999999999998  34778999999 7


Q ss_pred             Cceeeeeeeeccc-cCCeeEEEEcCCCCceEEEEecC-CCcEEEEeCCCCceeEEEec------cCCCeEEEeccccCCc
Q 001295          444 GDEVRQHLEIDAH-VGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEG------HEAPVYSVCPHHKENI  515 (1106)
Q Consensus       444 ~~~~~~~~~l~~h-~~~V~~~~~s~d~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~------h~~~v~~~~~~~~~~~  515 (1106)
                      |+.+..   +..+ ...+.++.+.+||+  ++++.+. ++.|..+|. +|+.+..+..      +......++  ...+|
T Consensus        65 G~~~W~---~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~--~~~~G  136 (276)
T 3no2_A           65 GRELWN---IAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQIN--KNKKG  136 (276)
T ss_dssp             SCEEEE---EECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCE--ECTTS
T ss_pred             CCEEEE---EcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCce--ECCCC
Confidence            776654   3333 34688999999999  6777766 778888884 7888777652      112233333  35677


Q ss_pred             eEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEEC
Q 001295          516 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM  595 (1106)
Q Consensus       516 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~  595 (1106)
                      +++++...++.|.+||.. ++.+..+.... ...+                     +...++++.++++..++.|..+|.
T Consensus       137 ~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~~---------------------~~~~~~g~~~v~~~~~~~v~~~d~  193 (276)
T 3no2_A          137 NYLVPLFATSEVREIAPN-GQLLNSVKLSG-TPFS---------------------SAFLDNGDCLVACGDAHCFVQLNL  193 (276)
T ss_dssp             CEEEEETTTTEEEEECTT-SCEEEEEECSS-CCCE---------------------EEECTTSCEEEECBTTSEEEEECT
T ss_pred             CEEEEecCCCEEEEECCC-CCEEEEEECCC-Cccc---------------------eeEcCCCCEEEEeCCCCeEEEEeC
Confidence            899999999999999987 77776665542 2222                     334455567888888889999999


Q ss_pred             CCcceeEEEccCC----CCCCcCeEEEccCCCEEEEEe
Q 001295          596 DSVQLLTSIDADG----GLPASPRIRFNKDGCLLAVST  629 (1106)
Q Consensus       596 ~~~~~~~~~~~~~----~~~~v~~v~~s~~~~~l~~~~  629 (1106)
                      .+|+.+..+....    ....+..++..++|.++++.+
T Consensus       194 ~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          194 ESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             TTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             cCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence            9999998886321    123366788889999998875

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.42  E-value=3.9e-11  Score=133.01  Aligned_cols=205  Identities=12%  Similarity=0.082  Sum_probs=142.5

Q ss_pred             eEEEEecCCCEEEEEe---CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEE-
Q 001295          814 PCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK-  889 (1106)
Q Consensus       814 ~~l~~s~~~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~-  889 (1106)
                      ..++++|||++++++.   ++.|.+.|+.+++.+.++....    +....|++.+.+++.+.||.+.+.+..+++.... 
T Consensus       180 ~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~  255 (426)
T 3c75_H          180 WMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD----CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTN  255 (426)
T ss_dssp             GGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEE
T ss_pred             ceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC----ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEe
Confidence            4578889999888875   3789999999999888876422    1334453446666677788888888866655432 


Q ss_pred             ---ecCcccCe-eEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCC----CCCCCCceEEEcCCCcEEEE
Q 001295          890 ---LKGHSKRI-TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT----PTAQSDTRVQFHQDQIHFLV  961 (1106)
Q Consensus       890 ---l~~h~~~V-~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~s~dg~~l~~  961 (1106)
                         +.....++ ..+.|++++..++..+..+.|.+.|+.+................    ........++++||++.+.+
T Consensus       256 ~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyV  335 (426)
T 3c75_H          256 TEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYL  335 (426)
T ss_dssp             CCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEE
T ss_pred             eeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEE
Confidence               22112222 24578999988888888899999998654321111111100000    00012345899999988777


Q ss_pred             Ee-----------CCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCC-EEEEEE-cCCeEEEEEcCCceeEEee
Q 001295          962 VH-----------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRCRI 1025 (1106)
Q Consensus       962 ~~-----------d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~-~l~t~s-~Dg~i~vwd~~~~~~~~~~ 1025 (1106)
                      ..           .+.|.++|..+.+.+..+...   .....|+|+|||+ +|+++. .++.|.|+|..+++.+.++
T Consensus       336 a~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg---~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          336 LVDQRDEWKHKAASRFVVVLNAETGERINKIELG---HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             EEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             EecccccccccCCCCEEEEEECCCCeEEEEEECC---CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            42           247999999999999998753   3589999999999 888888 5899999999999999887

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.38  E-value=9.6e-10  Score=118.85  Aligned_cols=278  Identities=9%  Similarity=0.051  Sum_probs=187.4

Q ss_pred             cccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecC
Q 001295          742 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  821 (1106)
Q Consensus       742 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~  821 (1106)
                      ....+.+++++++|+.+++...++.|.+|+.. .                      ......+..  ....+.+++++++
T Consensus        18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~----------------------~~~~~~~~~--~~~~~~~i~~~~~   72 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-G----------------------RIKEFEVPT--PDAKVMCLIVSSL   72 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S----------------------CEEEEECSS--TTCCEEEEEECTT
T ss_pred             CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-C----------------------ceEEEECCC--CCCcceeEEECCC
Confidence            34578899999999977776677888888653 1                      111111111  3456889999999


Q ss_pred             CCEEEEEe-CCeEEEEEcCCCceee-eecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEE-EecCcccCee
Q 001295          822 DSYVMSAS-GGKISLFNMMTFKTMA-TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS-KLKGHSKRIT  898 (1106)
Q Consensus       822 ~~~l~~~s-dg~i~vwd~~~~~~~~-~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~-~l~~h~~~V~  898 (1106)
                      ++++++.. ++.|..||.. ++... .+......+..+++.+ +++++++...++.|..||.. ++... .+......+.
T Consensus        73 g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~  149 (300)
T 2qc5_A           73 GDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPA  149 (300)
T ss_dssp             SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEE
T ss_pred             CCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCce
Confidence            99877776 6889999988 55432 2232346789999998 78888877778899999987 55442 2333456789


Q ss_pred             EEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeEEEEecCCceE
Q 001295          899 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC  977 (1106)
Q Consensus       899 ~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v~i~d~~~~~~  977 (1106)
                      ++++.++|+++++...++.|..|+. +++...   .... ..   ...+..++++++|.++++. ..+.|.+||. +++.
T Consensus       150 ~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~-~~---~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~  220 (300)
T 2qc5_A          150 FITLGSDNALWFTENQNNSIGRITN-TGKLEE---YPLP-TN---AAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEI  220 (300)
T ss_dssp             EEEECTTSSEEEEETTTTEEEEECT-TCCEEE---EECS-ST---TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE
T ss_pred             eEEECCCCCEEEEecCCCeEEEECC-CCcEEE---eeCC-CC---CCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcE
Confidence            9999999998887777888999998 433211   1111 11   1356889999999877775 4568999998 4544


Q ss_pred             eeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEE
Q 001295          978 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1057 (1106)
Q Consensus       978 ~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t 1057 (1106)
                      ... ....+...+.+++++++|++.++...++.|..||. +++.. .+.    .+.+  ..  .+.++++.+ +|+++++
T Consensus       221 ~~~-~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~----~~~~--~~--~~~~i~~~~-~g~l~v~  288 (300)
T 2qc5_A          221 SEY-DIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQ----LQTE--NA--EPHGITFGK-DGSVWFA  288 (300)
T ss_dssp             EEE-ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEE----CCST--TC--CCCCEEECT-TSCEEEE
T ss_pred             EEE-ECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEE----CCcc--CC--ccceeEeCC-CCCEEEE
Confidence            332 22234567899999999997776666789999998 45443 222    1211  11  233688888 5776665


Q ss_pred             EeCCCcEEEEeec
Q 001295         1058 GLSDGGVHVFEPL 1070 (1106)
Q Consensus      1058 ~~~Dg~v~vW~~~ 1070 (1106)
                      .. . .|..++..
T Consensus       289 ~~-~-~i~~~~p~  299 (300)
T 2qc5_A          289 LK-C-KIGKLNLN  299 (300)
T ss_dssp             CS-S-EEEEEEEC
T ss_pred             cc-C-ceEEeCCC
Confidence            54 4 66666653

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.37  E-value=1.7e-10  Score=125.75  Aligned_cols=256  Identities=13%  Similarity=0.105  Sum_probs=161.5

Q ss_pred             cCCCCcEEEEEecCCCeEEEE-------EeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEE
Q 001295          348 NQGSSPMSMDFHPVQQTLLLV-------GTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW  420 (1106)
Q Consensus       348 ~h~~~v~~~~~sp~g~~llat-------g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~  420 (1106)
                      ..-....+++|+++|+ ++++       +..++.|.+||..+++....   .   .         ....++...+.++++
T Consensus        15 ~~~~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~---~---~---------~~~~~~~~~~~~i~~   78 (314)
T 1pjx_A           15 EDIPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVI---C---K---------PEVNGYGGIPAGCQC   78 (314)
T ss_dssp             CCCTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEE---E---C---------CEETTEECCEEEEEE
T ss_pred             ccCCCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEE---E---e---------cccCCCCCCCceEEE
Confidence            3445778999999998 5766       56788999999888765321   0   0         001234467999999


Q ss_pred             ccC-CCEEEEEeCCCeEEEEEccCCceeee-eeeecc-ccCCeeEEEEcCCCCceEEEEecCC---------------Cc
Q 001295          421 SPD-GSLFGVAYSRHIVQIYSYHGGDEVRQ-HLEIDA-HVGGVNDIAFSHPNKQLCVITCGDD---------------KT  482 (1106)
Q Consensus       421 spd-g~~las~~~d~~v~iwd~~~~~~~~~-~~~l~~-h~~~V~~~~~s~d~~~~~l~s~~~d---------------~~  482 (1106)
                      +++ |+++++.. .+.|.+||.. ++.... .....+ +...+.+++++++|+  ++++...+               +.
T Consensus        79 ~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~~~  154 (314)
T 1pjx_A           79 DRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGS  154 (314)
T ss_dssp             CSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEE
T ss_pred             ecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC--EEEEecCcccccccccccccCCCCe
Confidence            999 76555544 4479999998 654321 111111 224589999999998  56666544               56


Q ss_pred             EEEEeCCCCceeEEEeccCCCeEEEecc--ccCCceEE-EEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCe
Q 001295          483 IKVWDATNGAKQYIFEGHEAPVYSVCPH--HKENIQFI-FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR  559 (1106)
Q Consensus       483 i~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~  559 (1106)
                      |..||.. ++.... ..+......++++  .+++++.+ ++...++.|.+||+.........       ..+.-.+..  
T Consensus       155 l~~~~~~-g~~~~~-~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~-------~~~~~~~~~--  223 (314)
T 1pjx_A          155 IYCFTTD-GQMIQV-DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK-------KVWGHIPGT--  223 (314)
T ss_dssp             EEEECTT-SCEEEE-EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE-------EEEEECCCC--
T ss_pred             EEEECCC-CCEEEe-ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccc-------eEEEECCCC--
Confidence            7777765 554333 3344456777775  11555555 44456899999987521111000       000000000  


Q ss_pred             EEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEE-eCCCcEEEEE
Q 001295          560 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS-TNDNGIKILA  638 (1106)
Q Consensus       560 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iwd  638 (1106)
                           .......++++++|+.+++...++.|.+||..+++.+..+..+.  ..+.+++|+++++.|+++ ..++.|..|+
T Consensus       224 -----~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~i~~~~dg~~l~v~~~~~~~l~~~~  296 (314)
T 1pjx_A          224 -----HEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPF--EKPSNLHFKPQTKTIFVTEHENNAVWKFE  296 (314)
T ss_dssp             -----SSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSS--SCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             -----CCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCC--CCceeEEECCCCCEEEEEeCCCCeEEEEe
Confidence                 00123446677777777777788999999998788777776442  368899999999955544 5568899998


Q ss_pred             ccC
Q 001295          639 TSD  641 (1106)
Q Consensus       639 ~~~  641 (1106)
                      +..
T Consensus       297 ~~~  299 (314)
T 1pjx_A          297 WQR  299 (314)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            764

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.37  E-value=3.3e-11  Score=148.16  Aligned_cols=281  Identities=11%  Similarity=0.048  Sum_probs=171.9

Q ss_pred             CCCCccccccCCC---ceeeEecCCCC-CCccceec-ccC--ccccccceEEEEEcCCCceEEEeecC-----ceEEEee
Q 001295          704 ADVKPRITEESND---KSKVWKLTELS-EPNQCRSL-RLP--ENLRATKISRLIFTNSGNAILALASN-----AIHLLWK  771 (1106)
Q Consensus       704 ~~~~~l~~~~~d~---~i~vw~~~~~~-~~~~~~~~-~~~--~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iw~  771 (1106)
                      +++.+++....++   ...+|...... .....+.+ ...  ..++...+..++|||||++|+.+..+     ..|++||
T Consensus       116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d  195 (741)
T 1yr2_A          116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG  195 (741)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred             EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence            6677666554443   35667665320 00111111 100  12233468899999999999887764     3577776


Q ss_pred             ccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CC--------------eEEEE
Q 001295          772 WQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GG--------------KISLF  836 (1106)
Q Consensus       772 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg--------------~i~vw  836 (1106)
                      +.                      +|..+....    +...+..++|+|| +.|+.++ ++              .|++|
T Consensus       196 l~----------------------tg~~~~~~~----~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~  248 (741)
T 1yr2_A          196 VA----------------------DGKPLADEL----KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLH  248 (741)
T ss_dssp             TT----------------------TCCEEEEEE----EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEE
T ss_pred             CC----------------------CCCCCCccC----CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEE
Confidence            65                      343322111    1112357899999 9888876 43              38999


Q ss_pred             EcCCCce----eeeecCCCCCeeEEEEecCCCceEEEeeCCC-----cEEEEEeecc--eEEEEecCcccCeeEEEEecC
Q 001295          837 NMMTFKT----MATFMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVD--EVKSKLKGHSKRITGLAFSHA  905 (1106)
Q Consensus       837 d~~~~~~----~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg-----~v~iwd~~~~--~~~~~l~~h~~~V~~l~~s~d  905 (1106)
                      ++.++..    +.....+...+..+.||| ||++|+..+.++     .|++||+.++  ++...+..+...+.... +|+
T Consensus       249 ~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~d  326 (741)
T 1yr2_A          249 RLGTPQSADQPVFATPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGV  326 (741)
T ss_dssp             ETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEE
T ss_pred             ECCCCchhCEEEeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-ecc
Confidence            9977652    222223334588999999 898888777554     8999999887  31456666666665554 589


Q ss_pred             CCEEEEEcCC----CcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEecC-CceEee
Q 001295          906 LNVLVSSGAD----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETT-KLECVK  979 (1106)
Q Consensus       906 ~~~l~s~s~D----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d~~-~~~~~~  979 (1106)
                      |+.|+..+.+    +.|.+|++.++. ..  ......++.   ..+..+.++ ++.++++ ..++..++|.+. ++....
T Consensus       327 g~~l~~~s~~~~~~~~l~~~d~~~~~-~~--~~~l~~~~~---~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~  399 (741)
T 1yr2_A          327 GDQLWFVSGDGAPLKKIVRVDLSGST-PR--FDTVVPESK---DNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAG  399 (741)
T ss_dssp             TTEEEEEECTTCTTCEEEEEECSSSS-CE--EEEEECCCS---SEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEE
T ss_pred             CCEEEEEECCCCCCCEEEEEeCCCCc-cc--cEEEecCCC---CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCcee
Confidence            9988887764    449999988743 11  112222221   234566776 4455555 577776666443 355555


Q ss_pred             ecccCCCCCCeeEEEECCCCCEEEEEE----cCCeEEEEEcCCcee
Q 001295          980 QWVPRESSAPITHATFSCDSQLVYACF----LDATVCVFSAANLKL 1021 (1106)
Q Consensus       980 ~~~~~~h~~~v~~l~~s~d~~~l~t~s----~Dg~i~vwd~~~~~~ 1021 (1106)
                      .+.. .+...|..++++||++.|+...    ..++|++||+.+++.
T Consensus       400 ~l~~-~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~  444 (741)
T 1yr2_A          400 AVSL-PGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT  444 (741)
T ss_dssp             ECBC-SSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred             eccC-CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            5442 2356789999999998766332    347899999998874

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.37  E-value=1.8e-11  Score=150.61  Aligned_cols=245  Identities=9%  Similarity=-0.017  Sum_probs=153.5

Q ss_pred             CCCCcEEEEEecCCCeEEEEEeccC----cEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCC
Q 001295          349 QGSSPMSMDFHPVQQTLLLVGTNVG----DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  424 (1106)
Q Consensus       349 h~~~v~~~~~sp~g~~llatg~~dg----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg  424 (1106)
                      |...+..++|||||++|+++.+.+|    .|++||+.+++.+.. .                   .+...+..++|||| 
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~-------------------~~~~~~~~~~wspD-  219 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-E-------------------LKWVKFSGLAWLGN-  219 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-E-------------------EEEEESCCCEESTT-
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-c-------------------CCCceeccEEEECC-
Confidence            3346889999999997444444334    599999999987542 0                   01112357899999 


Q ss_pred             CEEEEEeCCCe--------------EEEEEccCCcee-eeeeeeccccCCeeEEEEcCCCCceEEEEecC-----CCcEE
Q 001295          425 SLFGVAYSRHI--------------VQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD-----DKTIK  484 (1106)
Q Consensus       425 ~~las~~~d~~--------------v~iwd~~~~~~~-~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~-----d~~i~  484 (1106)
                      +.|+.++.++.              |++|++.++... ..+.....|...+..+.|+|||+.  |+..+.     ...|+
T Consensus       220 ~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~~l~  297 (741)
T 1yr2_A          220 DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRW--VVITSSEGTDPVNTVH  297 (741)
T ss_dssp             SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECTTCSCCEEE
T ss_pred             CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCE--EEEEEEccCCCcceEE
Confidence            99998876654              899999876532 112222334446899999999995  444433     34899


Q ss_pred             EEeCCCC--ceeEEEeccCCCeEEEeccccCCceEEEEEec----CCeEEEEeCCCCC-ceeE-eeCCCCeeEEEEEecC
Q 001295          485 VWDATNG--AKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL----DGKIKAWLYDNLG-SRVD-YEAPGRWCTTMAYSAD  556 (1106)
Q Consensus       485 iwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~-~~~~-~~~~~~~v~~~~~s~~  556 (1106)
                      +||+.++  ++...+..+...+....+ +  ++..|+..+.    ++.|.+||+.+.. .... +..+...+..+.+.  
T Consensus       298 ~~d~~~~~~~~~~~l~~~~~~~~~~~~-~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~--  372 (741)
T 1yr2_A          298 VARVTNGKIGPVTALIPDLKAQWDFVD-G--VGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA--  372 (741)
T ss_dssp             EEEEETTEECCCEEEECSSSSCEEEEE-E--ETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE--
T ss_pred             EEECCCCCCcccEEecCCCCceEEEEe-c--cCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE--
Confidence            9999887  425566656555554432 3  3456666654    4569999987642 2222 22222233333333  


Q ss_pred             CCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECC-CcceeEEEccCCCCCCcCeEEEccCCCEEEEEe----CC
Q 001295          557 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD-SVQLLTSIDADGGLPASPRIRFNKDGCLLAVST----ND  631 (1106)
Q Consensus       557 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~----~d  631 (1106)
                                          ++..+++...|+..++|.+. +++....+..+. ...+..++++|+++.++...    ..
T Consensus       373 --------------------~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P  431 (741)
T 1yr2_A          373 --------------------GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQP  431 (741)
T ss_dssp             --------------------BTEEEEEEEETTEEEEEEEETTSCEEEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEE
T ss_pred             --------------------CCEEEEEEEECCEEEEEEEeCCCCceeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCC
Confidence                                22356777788887777554 455566665322 23577889999987666332    24


Q ss_pred             CcEEEEEccCC
Q 001295          632 NGIKILATSDG  642 (1106)
Q Consensus       632 g~i~iwd~~~~  642 (1106)
                      ++|++||+.++
T Consensus       432 ~~i~~~d~~tg  442 (741)
T 1yr2_A          432 ATVLALDPATA  442 (741)
T ss_dssp             EEEEEEETTTT
T ss_pred             CEEEEEECCCC
Confidence            78999999876

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.36  E-value=2.5e-09  Score=115.57  Aligned_cols=238  Identities=11%  Similarity=-0.006  Sum_probs=161.6

Q ss_pred             CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEE
Q 001295          349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  428 (1106)
Q Consensus       349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  428 (1106)
                      ....+.++++.++|+ +.++...++.|.+||.. ++....                  .+..+...+.++++.++|++++
T Consensus        18 ~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~~------------------~~~~~~~~~~~i~~~~~g~l~v   77 (300)
T 2qc5_A           18 PDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKEF------------------EVPTPDAKVMCLIVSSLGDIWF   77 (300)
T ss_dssp             TTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEE------------------ECSSTTCCEEEEEECTTSCEEE
T ss_pred             CCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEEE------------------ECCCCCCcceeEEECCCCCEEE
Confidence            457889999999998 57666667899999987 543321                  1223345789999999999888


Q ss_pred             EEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeE-EEeccCCCeEEE
Q 001295          429 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY-IFEGHEAPVYSV  507 (1106)
Q Consensus       429 s~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~h~~~v~~~  507 (1106)
                      +...++.|..||.. ++...  ..+......+.++++.++|.  ++++...++.|..||.. ++... .+......+..+
T Consensus        78 ~~~~~~~v~~~d~~-g~~~~--~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i  151 (300)
T 2qc5_A           78 TENGANKIGKLSKK-GGFTE--YPLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFI  151 (300)
T ss_dssp             EETTTTEEEEECTT-SCEEE--EECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEE
T ss_pred             EecCCCeEEEECCC-CCeEE--ecCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeE
Confidence            77778889999988 54321  12333446789999999998  67777778899999977 65442 233344667888


Q ss_pred             eccccCCceEEEEEecCCeEEEEeCCCCCceeEee--CCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEE
Q 001295          508 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE--APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG  585 (1106)
Q Consensus       508 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  585 (1106)
                      ++.  +++.+.++...++.|..||. ++.. ..+.  .....                     ...+.++++++..++..
T Consensus       152 ~~d--~~g~l~v~~~~~~~i~~~~~-~g~~-~~~~~~~~~~~---------------------~~~i~~d~~g~l~v~~~  206 (300)
T 2qc5_A          152 TLG--SDNALWFTENQNNSIGRITN-TGKL-EEYPLPTNAAA---------------------PVGITSGNDGALWFVEI  206 (300)
T ss_dssp             EEC--TTSSEEEEETTTTEEEEECT-TCCE-EEEECSSTTCC---------------------EEEEEECTTSSEEEEET
T ss_pred             EEC--CCCCEEEEecCCCeEEEECC-CCcE-EEeeCCCCCCC---------------------cceEEECCCCCEEEEcc
Confidence            864  45566666666888999987 3222 2221  11222                     33455555555555555


Q ss_pred             CCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEc
Q 001295          586 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT  639 (1106)
Q Consensus       586 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~  639 (1106)
                      ..+.|.+|+. +++..... .......+.+++++++|+++++...++.|..|+.
T Consensus       207 ~~~~i~~~~~-~g~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          207 MGNKIGRITT-TGEISEYD-IPTPNARPHAITAGKNSEIWFTEWGANQIGRITN  258 (300)
T ss_dssp             TTTEEEEECT-TCCEEEEE-CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred             CCCEEEEEcC-CCcEEEEE-CCCCCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence            6778999998 55544332 2222345788999999997777666788888876

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.35  E-value=1.2e-10  Score=126.97  Aligned_cols=245  Identities=9%  Similarity=0.039  Sum_probs=162.9

Q ss_pred             cceEEEEEcCCCceEEE-------eecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccC-CCCCCCCeeE
Q 001295          744 TKISRLIFTNSGNAILA-------LASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT-DSNPEEAVPC  815 (1106)
Q Consensus       744 ~~i~~~~~s~~~~~l~~-------~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~-~~~~~~~v~~  815 (1106)
                      ....+++|++++..+++       ...++.|.+|+...                      +........ ..++...+.+
T Consensus        18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~----------------------g~~~~~~~~~~~~~~~~~~~   75 (314)
T 1pjx_A           18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKT----------------------GKKTVICKPEVNGYGGIPAG   75 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTT----------------------CCEEEEECCEETTEECCEEE
T ss_pred             CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCC----------------------CcEEEEEecccCCCCCCCce
Confidence            35678999999987777       56778888887542                      221111000 0013456889


Q ss_pred             EEEecC-CCEEEEEeCCeEEEEEcCCCceeee-ecC----CCCCeeEEEEecCCCceEEEeeCC---------------C
Q 001295          816 FALSKN-DSYVMSASGGKISLFNMMTFKTMAT-FMP----PPPAATFLAFHPQDNNIIAIGMDD---------------S  874 (1106)
Q Consensus       816 l~~s~~-~~~l~~~sdg~i~vwd~~~~~~~~~-~~~----~~~~v~~l~~s~~d~~~la~g~~d---------------g  874 (1106)
                      ++++++ ++++++..++.|.+||.. ++.... ...    ....+.++++++ +++++++...+               +
T Consensus        76 i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~  153 (314)
T 1pjx_A           76 CQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFG  153 (314)
T ss_dssp             EEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCE
T ss_pred             EEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCC
Confidence            999999 776666656689999988 665433 221    123588999999 78877776655               5


Q ss_pred             cEEEEEeecceEEEEecCcccCeeEEEEe----cCCCEE-EEEcCCCcEEEEeCC-CcccccceeecccCCCCCCCCCCc
Q 001295          875 SIQIYNVRVDEVKSKLKGHSKRITGLAFS----HALNVL-VSSGADSQLCVWSSD-GWEKQKNRFLQIPTGRTPTAQSDT  948 (1106)
Q Consensus       875 ~v~iwd~~~~~~~~~l~~h~~~V~~l~~s----~d~~~l-~s~s~Dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~i~  948 (1106)
                      .|..|+.. ++... +..+......++|+    +|++.| ++...++.|.+|+++ +++...........++.  ...+.
T Consensus       154 ~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~--~~~p~  229 (314)
T 1pjx_A          154 SIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH--EGGAD  229 (314)
T ss_dssp             EEEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS--SCEEE
T ss_pred             eEEEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCC--CCCCC
Confidence            67777655 55433 33344557889999    999755 445678899999986 33221111222222211  02457


Q ss_pred             eEEEcCCCcEEEEE-eCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEE-EcCCeEEEEEcCC
Q 001295          949 RVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYAC-FLDATVCVFSAAN 1018 (1106)
Q Consensus       949 ~~~~s~dg~~l~~~-~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~-s~Dg~i~vwd~~~ 1018 (1106)
                      .++++++|+++++. .++.|.+||..+++.+..+.  .+...+.+++|++|+++|+.+ ..++.|..|++..
T Consensus       230 ~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~--~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          230 GMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR--CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE--CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             ceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe--CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            89999999988874 67899999998777666554  345789999999999965544 4567899999864

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.31  E-value=2.3e-10  Score=126.86  Aligned_cols=239  Identities=13%  Similarity=0.071  Sum_probs=161.9

Q ss_pred             EEEEecCCCEEEEEe-----------CCeEEEEEcCCCceeeeecCC-------CCCeeEEEEecCCCceEEEeeC--CC
Q 001295          815 CFALSKNDSYVMSAS-----------GGKISLFNMMTFKTMATFMPP-------PPAATFLAFHPQDNNIIAIGMD--DS  874 (1106)
Q Consensus       815 ~l~~s~~~~~l~~~s-----------dg~i~vwd~~~~~~~~~~~~~-------~~~v~~l~~s~~d~~~la~g~~--dg  874 (1106)
                      .++++||+++++++.           ++.|.++|..+++.+.++...       ......++|+| |+++|+++..  ++
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~sp-DGk~lyV~n~~~~~  200 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTP-DNKNLLFYQFSPAP  200 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECT-TSSEEEEEECSSSC
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcC-CCCEEEEEecCCCC
Confidence            799999999888774           467999999999988876422       13456789999 8888888764  57


Q ss_pred             cEEEEEeecceEEEEecCcccCeeEEEEecCC-CEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEc
Q 001295          875 SIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH  953 (1106)
Q Consensus       875 ~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~-~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  953 (1106)
                      .|.++|+.+++.+.++.--..    ....|++ ..+++.+.||++.+.+..+++.... ......-...  .....+.|+
T Consensus       201 ~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~-~~~~~~v~~~--p~~~~~~~~  273 (426)
T 3c75_H          201 AVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVT-NTEVFHTEDE--LLINHPAFS  273 (426)
T ss_dssp             EEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEE-ECCCCSCTTS--CBCSCCEEC
T ss_pred             eEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEE-eeeeeccCCC--ceeeEeeec
Confidence            899999999999888764221    2233433 5556667777777777744332210 0001100000  012346789


Q ss_pred             CCCcEEEE-EeCCeEEEEecCCceEe--eecccCC--------CCCCeeEEEECCCCCEEEEEEc----------CCeEE
Q 001295          954 QDQIHFLV-VHETQLAIFETTKLECV--KQWVPRE--------SSAPITHATFSCDSQLVYACFL----------DATVC 1012 (1106)
Q Consensus       954 ~dg~~l~~-~~d~~v~i~d~~~~~~~--~~~~~~~--------h~~~v~~l~~s~d~~~l~t~s~----------Dg~i~ 1012 (1106)
                      +++..++. ...+.|.+.|.......  ..+....        .......++++||++.|++...          ++.|.
T Consensus       274 ~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~Vs  353 (426)
T 3c75_H          274 LRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVV  353 (426)
T ss_dssp             TTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEE
T ss_pred             CCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEE
Confidence            99887666 56788999998655421  2221100        0112234789999998777653          35799


Q ss_pred             EEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCC-EEEEEe-CCCcEEEEeecCCC
Q 001295         1013 VFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGL-SDGGVHVFEPLESE 1073 (1106)
Q Consensus      1013 vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~-~l~t~~-~Dg~v~vW~~~~~~ 1073 (1106)
                      ++|..+++.+.++.    .+.       .|..+.|+| |++ ++++.. .++.|.|+|+.+.+
T Consensus       354 VID~~T~kvv~~I~----vg~-------~P~gia~sp-Dg~~~lyv~n~~s~~VsVID~~t~k  404 (426)
T 3c75_H          354 VLNAETGERINKIE----LGH-------EIDSINVSQ-DAEPLLYALSAGTQTLHIYDAATGE  404 (426)
T ss_dssp             EEETTTCCEEEEEE----EEE-------EECEEEECC-SSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             EEECCCCeEEEEEE----CCC-------CcCeEEEcc-CCCEEEEEEcCCCCeEEEEECCCCC
Confidence            99999999999886    221       244799999 677 788777 59999999999988

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.29  E-value=7.4e-10  Score=124.60  Aligned_cols=248  Identities=8%  Similarity=-0.001  Sum_probs=164.0

Q ss_pred             CCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCC--cEEEEEeecceEE
Q 001295          811 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVK  887 (1106)
Q Consensus       811 ~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg--~v~iwd~~~~~~~  887 (1106)
                      .....++++++++++++.. ++.|++||..++........ ..... ++|++ +++.|+++..++  .|++|+..++...
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~  207 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAP  207 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCcee
Confidence            4578999999999777666 68999999988776555443 23334 99999 788888887766  7888887765443


Q ss_pred             EEe----cCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecc--cCCCCCCCCCCc-eEEEcCC-CcEE
Q 001295          888 SKL----KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQI--PTGRTPTAQSDT-RVQFHQD-QIHF  959 (1106)
Q Consensus       888 ~~l----~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~i~-~~~~s~d-g~~l  959 (1106)
                      ..+    ..+...+.+++++|++..|..+..++.|+.||..++...   .+..  ..+...  .... .++|+|+ +.++
T Consensus       208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~---~~~~~~~~g~~~--~~P~~~ia~~p~~g~ly  282 (409)
T 3hrp_A          208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT---LIKQLELSGSLG--TNPGPYLIYYFVDSNFY  282 (409)
T ss_dssp             EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEE---EEEECCCCSCCC--CSSCCEEEEETTTTEEE
T ss_pred             EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEE---EEecccccCCCC--CCccccEEEeCCCCEEE
Confidence            333    225567889999995555555777889999999875421   1110  111111  1123 9999996 5554


Q ss_pred             EE-EeCCeEEEEecCCceEeeecccCC-------------CCCCeeEEEECCCCCEEEEEE-cCCeEEEEEcCCceeEEe
Q 001295          960 LV-VHETQLAIFETTKLECVKQWVPRE-------------SSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCR 1024 (1106)
Q Consensus       960 ~~-~~d~~v~i~d~~~~~~~~~~~~~~-------------h~~~v~~l~~s~d~~~l~t~s-~Dg~i~vwd~~~~~~~~~ 1024 (1106)
                      ++ ...+.|+.|+....  +..+....             .-.....++++++|+++++-+ .++.|+.|++.++.....
T Consensus       283 v~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~  360 (409)
T 3hrp_A          283 MSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTV  360 (409)
T ss_dssp             EEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEE
T ss_pred             EEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEE
Confidence            44 35688999997643  22221100             023578999999999777777 789999999888875433


Q ss_pred             eCCCcc--cCCC--CCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEee
Q 001295         1025 INPSAY--LPAG--VSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1069 (1106)
Q Consensus      1025 ~~~~~~--~~~~--~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~ 1069 (1106)
                      ......  ...+  ....--.|..+++++ ++.++++-..++.|+.+.+
T Consensus       361 ~g~~~~~g~~~g~~~~~~~~~P~giavd~-~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          361 AGQVDVASQIDGTPLEATFNYPYDICYDG-EGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EECTTCBSCCCBSTTTCCBSSEEEEEECS-SSEEEEEESTTCEEEEEEE
T ss_pred             eCCCCCCCcCCCChhceEeCCceEEEEcC-CCCEEEEECCCCeEEEEEe
Confidence            321000  0000  001113467899999 5888888888888888775

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.29  E-value=1.3e-09  Score=122.63  Aligned_cols=255  Identities=11%  Similarity=0.039  Sum_probs=164.5

Q ss_pred             CCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEE
Q 001295          351 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA  430 (1106)
Q Consensus       351 ~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~  430 (1106)
                      ...+.++|+++|+ |+++...++.|++||..++.....                   ... ..... ++|+|++++|+++
T Consensus       131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~-------------------~~~-~~~~~-ia~~~~g~~l~~~  188 (409)
T 3hrp_A          131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTV-------------------HPG-FKGGK-PAVTKDKQRVYSI  188 (409)
T ss_dssp             CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEE-------------------EET-CCBCB-CEECTTSSEEEEE
T ss_pred             CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEe-------------------ecc-CCCCc-eeEecCCCcEEEE
Confidence            4688999999998 788877789999999987765432                   112 12233 9999999999988


Q ss_pred             eCCC--eEEEEEccCCceeeeeeeecc-ccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEE----EeccCCC
Q 001295          431 YSRH--IVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI----FEGHEAP  503 (1106)
Q Consensus       431 ~~d~--~v~iwd~~~~~~~~~~~~l~~-h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~----~~~h~~~  503 (1106)
                      ..++  .|.+|+..++........+.. +...+.+++++|++..  |+.+..++.|+.||..++.....    ..++...
T Consensus       189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~--lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~  266 (409)
T 3hrp_A          189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW--LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGT  266 (409)
T ss_dssp             BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE--EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred             ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe--EEEEECCCcEEEEECCCCCEEEEecccccCCCCC
Confidence            8765  799999887654332212222 4567889999996553  33366688999999887764322    2222222


Q ss_pred             e--EEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEE
Q 001295          504 V--YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF  581 (1106)
Q Consensus       504 v--~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l  581 (1106)
                      -  ..++|++. ++.++++...++.|+.|+.+..  ...+....... .   ..++.  .....-.....++++++|+.+
T Consensus       267 ~P~~~ia~~p~-~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~-g---~~dg~--~~~~~~~~P~gia~d~dG~ly  337 (409)
T 3hrp_A          267 NPGPYLIYYFV-DSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQK-T---VQDGL--REEALFAQPNGMTVDEDGNFY  337 (409)
T ss_dssp             SSCCEEEEETT-TTEEEEEETTTTEEEEECTTCC--EEEEEECTTCC-S---CBCEE--GGGCBCSSEEEEEECTTCCEE
T ss_pred             CccccEEEeCC-CCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCC-C---cCCCc--ccccEeCCCeEEEEeCCCCEE
Confidence            2  27887653 3467777778899999987642  22222211000 0   00000  000001134567788888877


Q ss_pred             EEEE-CCCeEEEEECCCcceeEEEccCC-------------CCCCcCeEEEccCCCEEEEEeCCCcEEEEEc
Q 001295          582 LAAG-DDFSIKFWDMDSVQLLTSIDADG-------------GLPASPRIRFNKDGCLLAVSTNDNGIKILAT  639 (1106)
Q Consensus       582 ~~~~-~d~~i~iwd~~~~~~~~~~~~~~-------------~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~  639 (1106)
                      ++-. .++.|+.|++.+++... +.+..             .......++++++|.++++-..++.|+.+++
T Consensus       338 vad~~~~~~I~~~~~~~G~v~~-~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          338 IVDGFKGYCLRKLDILDGYVST-VAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EEETTTTCEEEEEETTTTEEEE-EEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             EEeCCCCCEEEEEECCCCEEEE-EeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            7777 78999999987776443 32220             1234678999999988888888888988765

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.28  E-value=7.6e-10  Score=119.78  Aligned_cols=240  Identities=12%  Similarity=0.047  Sum_probs=155.8

Q ss_pred             eeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccC
Q 001295          344 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  423 (1106)
Q Consensus       344 ~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd  423 (1106)
                      ..+..+.......+|+|+|++|++++..++.|..|+. +++...                    +..+...+..++++++
T Consensus        38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~--------------------~~~~~~~~~gl~~d~d   96 (305)
T 3dr2_A           38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDV--------------------LLDATAFTNGNAVDAQ   96 (305)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEE--------------------EEESCSCEEEEEECTT
T ss_pred             EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEE--------------------EeCCCCccceeeECCC
Confidence            3344466778899999999988889888999999998 444221                    2334557899999999


Q ss_pred             CCEEEEEeCCCeEEEEEccCCceeeeeeeeccc-cCCeeEEEEcCCCCceEEEE----ecC-------------CCcEEE
Q 001295          424 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAH-VGGVNDIAFSHPNKQLCVIT----CGD-------------DKTIKV  485 (1106)
Q Consensus       424 g~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h-~~~V~~~~~s~d~~~~~l~s----~~~-------------d~~i~i  485 (1106)
                      |+++++...++.|.+|+.. ++.........+. ...+.++++.++|.  +++|    |..             .+.|..
T Consensus        97 G~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~~v~~  173 (305)
T 3dr2_A           97 QRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHHSVYR  173 (305)
T ss_dssp             SCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCEEEEE
T ss_pred             CCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCCeEEE
Confidence            9977766666889999986 4432211111121 23578899999998  6776    332             256888


Q ss_pred             EeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecC------CeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCe
Q 001295          486 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD------GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR  559 (1106)
Q Consensus       486 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~  559 (1106)
                      ||..+++.....  .......++|++  +++.|+.+...      +.|..|++.... +....                 
T Consensus       174 ~d~~~g~~~~~~--~~~~p~gl~~sp--dg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~-----------------  231 (305)
T 3dr2_A          174 LPPDGSPLQRMA--DLDHPNGLAFSP--DEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRR-----------------  231 (305)
T ss_dssp             ECSSSCCCEEEE--EESSEEEEEECT--TSSEEEEEECCC---CCCEEEEEEEETTE-EEEEE-----------------
T ss_pred             EcCCCCcEEEEe--cCCCCcceEEcC--CCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCe-----------------
Confidence            887777654433  445667888755  44666666554      789999876532 11000                 


Q ss_pred             EEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEE
Q 001295          560 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIK  635 (1106)
Q Consensus       560 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~  635 (1106)
                      .+..........+.++++|+. .++..+ .|.+|+. .++.+..+....   .+.+++|+++++.|.+++.++..+
T Consensus       232 ~~~~~~~~~pdgi~~d~~G~l-wv~~~~-gv~~~~~-~g~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l~~  301 (305)
T 3dr2_A          232 HFASVPDGLPDGFCVDRGGWL-WSSSGT-GVCVFDS-DGQLLGHIPTPG---TASNCTFDQAQQRLFITGGPCLWM  301 (305)
T ss_dssp             EEECCSSSCCCSEEECTTSCE-EECCSS-EEEEECT-TSCEEEEEECSS---CCCEEEECTTSCEEEEEETTEEEE
T ss_pred             EEEECCCCCCCeEEECCCCCE-EEecCC-cEEEECC-CCCEEEEEECCC---ceeEEEEeCCCCEEEEEcCCeEEE
Confidence            000000112233566777774 444444 5999998 577777776543   478999999999998888764433

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.27  E-value=1.6e-09  Score=116.68  Aligned_cols=237  Identities=11%  Similarity=0.083  Sum_probs=151.9

Q ss_pred             CCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEE
Q 001295          350 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV  429 (1106)
Q Consensus       350 ~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las  429 (1106)
                      ..-..+..|+|++..|+++...++.|..||..+++...                     ......+.+++++|+|+++++
T Consensus        12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~---------------------~~~~~~~~~i~~~~dG~l~v~   70 (297)
T 3g4e_A           12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR---------------------VTMDAPVSSVALRQSGGYVAT   70 (297)
T ss_dssp             CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE---------------------EECSSCEEEEEEBTTSSEEEE
T ss_pred             CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE---------------------EeCCCceEEEEECCCCCEEEE
Confidence            34556899999877788888888999999998876422                     112357999999999996554


Q ss_pred             EeCCCeEEEEEccCCceeeeeeeecc--ccCCeeEEEEcCCCCceEEEEe-cC--------CCcEEEEeCCCCceeEEEe
Q 001295          430 AYSRHIVQIYSYHGGDEVRQHLEIDA--HVGGVNDIAFSHPNKQLCVITC-GD--------DKTIKVWDATNGAKQYIFE  498 (1106)
Q Consensus       430 ~~~d~~v~iwd~~~~~~~~~~~~l~~--h~~~V~~~~~s~d~~~~~l~s~-~~--------d~~i~iwd~~~~~~~~~~~  498 (1106)
                       . ++.|.+||..+++... +.....  ....++.++++|+|+  ++++. +.        .....||.+.....+..+.
T Consensus        71 -~-~~~l~~~d~~~g~~~~-~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~  145 (297)
T 3g4e_A           71 -I-GTKFCALNWKEQSAVV-LATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYF  145 (297)
T ss_dssp             -E-TTEEEEEETTTTEEEE-EEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEE
T ss_pred             -E-CCeEEEEECCCCcEEE-EEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCEEEEe
Confidence             4 5679999998876432 222111  123588999999998  45543 21        1234555544322233333


Q ss_pred             ccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCC-CCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCC
Q 001295          499 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT  577 (1106)
Q Consensus       499 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~  577 (1106)
                      .+....+.++|+++.. .++++.+.++.|..||++. .......        .+.....       ........++++++
T Consensus       146 ~~~~~pngi~~spdg~-~lyv~~~~~~~i~~~~~d~~~G~~~~~--------~~~~~~~-------~~~~~p~g~~~d~~  209 (297)
T 3g4e_A          146 DQVDISNGLDWSLDHK-IFYYIDSLSYSVDAFDYDLQTGQISNR--------RSVYKLE-------KEEQIPDGMCIDAE  209 (297)
T ss_dssp             EEESBEEEEEECTTSC-EEEEEEGGGTEEEEEEECTTTCCEEEE--------EEEEECC-------GGGCEEEEEEEBTT
T ss_pred             eccccccceEEcCCCC-EEEEecCCCCcEEEEeccCCCCcccCc--------EEEEECC-------CCCCCCCeeEECCC
Confidence            3445567888865442 2446667789999998742 1111100        0000000       00113345667777


Q ss_pred             CCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEc-cCCCEEEEEeC
Q 001295          578 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTN  630 (1106)
Q Consensus       578 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s-~~~~~l~~~~~  630 (1106)
                      |+..++....+.|.+||..+++.+..+..+.  ..+++++|. |+++.|++++.
T Consensus       210 G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~--~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          210 GKLWVACYNGGRVIRLDPVTGKRLQTVKLPV--DKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             SCEEEEEETTTEEEEECTTTCCEEEEEECSS--SBEEEEEEESGGGCEEEEEEB
T ss_pred             CCEEEEEcCCCEEEEEcCCCceEEEEEECCC--CCceEEEEeCCCCCEEEEEcC
Confidence            7777777778899999999999988887653  358899998 88887776664

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.26  E-value=8.6e-10  Score=118.80  Aligned_cols=228  Identities=11%  Similarity=0.076  Sum_probs=149.6

Q ss_pred             ceEEEEEcCCCceE-EEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCC
Q 001295          745 KISRLIFTNSGNAI-LALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS  823 (1106)
Q Consensus       745 ~i~~~~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~  823 (1106)
                      -..+..|++++..+ ++...++.|..|+...                      +......     ....+.+++++++|+
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~----------------------~~~~~~~-----~~~~~~~i~~~~dG~   66 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFT----------------------KQVQRVT-----MDAPVSSVALRQSGG   66 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTT----------------------CCEEEEE-----CSSCEEEEEEBTTSS
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCC----------------------CcEEEEe-----CCCceEEEEECCCCC
Confidence            44578888865544 4445578888887652                      2211110     345689999999999


Q ss_pred             EEEEEeCCeEEEEEcCCCceeeeecC----CCCCeeEEEEecCCCceEEEeeCC---------CcEEEEEeec-ceEEEE
Q 001295          824 YVMSASGGKISLFNMMTFKTMATFMP----PPPAATFLAFHPQDNNIIAIGMDD---------SSIQIYNVRV-DEVKSK  889 (1106)
Q Consensus       824 ~l~~~sdg~i~vwd~~~~~~~~~~~~----~~~~v~~l~~s~~d~~~la~g~~d---------g~v~iwd~~~-~~~~~~  889 (1106)
                      ++++ .++.|.+||..+++.......    ....+..++++| +++++++...+         ..-.||.+.. ++. ..
T Consensus        67 l~v~-~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~  143 (297)
T 3g4e_A           67 YVAT-IGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV-KK  143 (297)
T ss_dssp             EEEE-ETTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE-EE
T ss_pred             EEEE-ECCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCE-EE
Confidence            5554 577899999987765332221    123478899999 78877654322         3345665543 333 23


Q ss_pred             ecCcccCeeEEEEecCCCEE-EEEcCCCcEEEEeCC--CcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCC
Q 001295          890 LKGHSKRITGLAFSHALNVL-VSSGADSQLCVWSSD--GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HET  965 (1106)
Q Consensus       890 l~~h~~~V~~l~~s~d~~~l-~s~s~Dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~  965 (1106)
                      +..+....+.++|+||++.| ++.+.++.|.+|+++  ++.....+.+......   ...+..++++++|++.++. ..+
T Consensus       144 ~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~---~~~p~g~~~d~~G~lwva~~~~~  220 (297)
T 3g4e_A          144 YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKE---EQIPDGMCIDAEGKLWVACYNGG  220 (297)
T ss_dssp             EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGG---GCEEEEEEEBTTSCEEEEEETTT
T ss_pred             EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCC---CCCCCeeEECCCCCEEEEEcCCC
Confidence            33344556899999999876 555667889999873  4433222222211111   1245789999999887775 567


Q ss_pred             eEEEEecCCceEeeecccCCCCCCeeEEEEC-CCCCEEEEEEc
Q 001295          966 QLAIFETTKLECVKQWVPRESSAPITHATFS-CDSQLVYACFL 1007 (1106)
Q Consensus       966 ~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s-~d~~~l~t~s~ 1007 (1106)
                      .|..||..+++.+..+..  +...+++++|. ||++.|+.++.
T Consensus       221 ~v~~~d~~tG~~~~~i~~--p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          221 RVIRLDPVTGKRLQTVKL--PVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             EEEEECTTTCCEEEEEEC--SSSBEEEEEEESGGGCEEEEEEB
T ss_pred             EEEEEcCCCceEEEEEEC--CCCCceEEEEeCCCCCEEEEEcC
Confidence            899999999998887763  35679999998 88887766554

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.26  E-value=1.3e-10  Score=128.00  Aligned_cols=270  Identities=8%  Similarity=-0.013  Sum_probs=174.7

Q ss_pred             cceEEEEEcCCCceEEEeec--CceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecC
Q 001295          744 TKISRLIFTNSGNAILALAS--NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  821 (1106)
Q Consensus       744 ~~i~~~~~s~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~  821 (1106)
                      .....++++++|+.+++...  ++.++||.+..+      ...      -|.  +..     .....+-..+..++++++
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g------~~~------~~p--~~~-----~~~~~~~~~p~gv~~d~~   77 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQD------GLI------PFP--PQS-----GNAIITFDTVLGIKSDGN   77 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETT------EEE------ESC--CCC-----SSCCCCCSCEEEEEECSS
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCC------Cee------cCC--Ccc-----cCcccceeEeeEEEEcCC
Confidence            46789999999998777542  343566655411      110      000  000     001125667999999999


Q ss_pred             CCEEEEEe------CCeEEEEEcCCCceeeeecCC------CCCeeEEEEecCCCceEEEee---CCCcEEEEEeecceE
Q 001295          822 DSYVMSAS------GGKISLFNMMTFKTMATFMPP------PPAATFLAFHPQDNNIIAIGM---DDSSIQIYNVRVDEV  886 (1106)
Q Consensus       822 ~~~l~~~s------dg~i~vwd~~~~~~~~~~~~~------~~~v~~l~~s~~d~~~la~g~---~dg~v~iwd~~~~~~  886 (1106)
                      ++++++-.      ++.|.+||+.+++.+..+...      ...+..++++++++..+++..   .++.|.+||+.+++.
T Consensus        78 g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~  157 (343)
T 2qe8_A           78 GIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA  157 (343)
T ss_dssp             SEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE
T ss_pred             CcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE
Confidence            98666543      378999999988876665422      234689999984455556555   678999999999888


Q ss_pred             EEEecCcccCee-EEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eC
Q 001295          887 KSKLKGHSKRIT-GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE  964 (1106)
Q Consensus       887 ~~~l~~h~~~V~-~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d  964 (1106)
                      ...+.+|..... ...++++|..+.+.+.|+.++.|..                      .+..++|+|||+.|.++ ..
T Consensus       158 ~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~----------------------~~~gia~s~dg~~ly~~~~~  215 (343)
T 2qe8_A          158 ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL----------------------GVNGIVLDAENEWLYLSPMH  215 (343)
T ss_dssp             EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC----------------------CEEEEEECTTSCEEEEEESS
T ss_pred             EEEecCCCcccccccceeECCEEEEeccCCCceeceec----------------------ccceeEeccCCCEEEEEeCC
Confidence            777776533211 1456678888888888888876642                      23679999999988875 33


Q ss_pred             -CeEEEEecCC---c-----eEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCC
Q 001295          965 -TQLAIFETTK---L-----ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV 1035 (1106)
Q Consensus       965 -~~v~i~d~~~---~-----~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 1035 (1106)
                       ..+..++...   +     +....+...++......++++++|.++++...++.|.+||..+++......    .+.  
T Consensus       216 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~----~~~--  289 (343)
T 2qe8_A          216 STSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT----DEK--  289 (343)
T ss_dssp             CSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE----CGG--
T ss_pred             CCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE----CCc--
Confidence             3555555321   1     000001111223456789999999999988889999999986676443322    111  


Q ss_pred             CCCCccceEEEEeCCCCCEEEEEeCCCcE
Q 001295         1036 SSSNVHPLVIAAHPQEPNEFALGLSDGGV 1064 (1106)
Q Consensus      1036 ~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v 1064 (1106)
                         ...|..++|.+ +++++++.+..+.+
T Consensus       290 ---~~~p~~va~~~-~g~l~v~~~~~~~~  314 (343)
T 2qe8_A          290 ---LSWTDSFNFGS-DGYLYFDCNQLHHS  314 (343)
T ss_dssp             ---GSCEEEEEECT-TSCEEEEECCGGGS
T ss_pred             ---eecCCeeEECC-CCcEEEEeCccccc
Confidence               13456899998 58888887755544

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.25  E-value=1.1e-10  Score=127.39  Aligned_cols=173  Identities=13%  Similarity=0.126  Sum_probs=134.8

Q ss_pred             CCeeEEEEecCCCEEEEEeCCeEEEEEcCCCc-----------eeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEE
Q 001295          811 EAVPCFALSKNDSYVMSASGGKISLFNMMTFK-----------TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY  879 (1106)
Q Consensus       811 ~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~-----------~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iw  879 (1106)
                      ..+..+++++...++++|+...+.+|++++..           ..... .+.. |+.++|   |+.+|+++ .++.|++|
T Consensus        38 ~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f---d~~~L~v~-~~~~l~v~  111 (388)
T 1xip_A           38 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF---HGDQVLVS-TRNALYSL  111 (388)
T ss_dssp             SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE---ETTEEEEE-ESSEEEEE
T ss_pred             ccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE---CCCEEEEE-cCCcEEEE
Confidence            36889999999999999997788889976433           11222 3555 999999   57888888 88999999


Q ss_pred             EeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEE
Q 001295          880 NVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF  959 (1106)
Q Consensus       880 d~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l  959 (1106)
                      |+.+.........|...|.++.+.+.  .+++++.||.|.+||++++...     ..       ...|++++|||+| ..
T Consensus       112 dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~-----~~-------~~~Vs~v~WSpkG-~~  176 (388)
T 1xip_A          112 DLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTK-----QL-------AQNVTSFDVTNSQ-LA  176 (388)
T ss_dssp             ESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEE-----EE-------EESEEEEEECSSE-EE
T ss_pred             EchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCccc-----cc-------cCCceEEEEcCCc-eE
Confidence            99886656666778888988887755  3888999999999999975532     11       1368999999999 44


Q ss_pred             EEEeCCeEEEEecCCceE--eeeccc----C---CCCCCeeEEEECCCCCEEEE
Q 001295          960 LVVHETQLAIFETTKLEC--VKQWVP----R---ESSAPITHATFSCDSQLVYA 1004 (1106)
Q Consensus       960 ~~~~d~~v~i~d~~~~~~--~~~~~~----~---~h~~~v~~l~~s~d~~~l~t 1004 (1106)
                      +...||.+++|+..++++  .+.+..    .   +|...|.+|.|.+++.+|++
T Consensus       177 vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          177 VLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             EEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            447899999999988776  455521    1   47889999999999999876

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.22  E-value=2.5e-10  Score=124.52  Aligned_cols=198  Identities=9%  Similarity=-0.022  Sum_probs=128.3

Q ss_pred             eEEEEecCCCEEEEEe---CCeEEE--EEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeec-----
Q 001295          814 PCFALSKNDSYVMSAS---GGKISL--FNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-----  883 (1106)
Q Consensus       814 ~~l~~s~~~~~l~~~s---dg~i~v--wd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~-----  883 (1106)
                      ..++++|||++++++.   +..|.+  +|+.+   +..+.....    ..+.|++.+.+++.+.||.+.+.|+.+     
T Consensus       127 ~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~----~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~  199 (368)
T 1mda_H          127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC----FHIHPGAAATHYLGSCPASLAASDLAAAPAAA  199 (368)
T ss_dssp             TSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC----CCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred             ceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc----eEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence            4578888988888875   256888  88877   344432111    223453455666777899998889886     


Q ss_pred             ceEEEE----ecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCC----CCCCCCCCceEEEcCC
Q 001295          884 DEVKSK----LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTG----RTPTAQSDTRVQFHQD  955 (1106)
Q Consensus       884 ~~~~~~----l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~s~d  955 (1106)
                      ++....    +.-...+.   + ++++..++..+. +.|.+.|+.+........+.....    ..........++|+||
T Consensus       200 ~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~d  274 (368)
T 1mda_H          200 GIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKN  274 (368)
T ss_dssp             EECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETT
T ss_pred             CeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCC
Confidence            543321    11112232   3 667777766666 899999987532111111111000    0000012234889999


Q ss_pred             CcEEEEE-e-C--------CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCE-EEEEE-cCCeEEEEEcCCceeEE
Q 001295          956 QIHFLVV-H-E--------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQL-VYACF-LDATVCVFSAANLKLRC 1023 (1106)
Q Consensus       956 g~~l~~~-~-d--------~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~-l~t~s-~Dg~i~vwd~~~~~~~~ 1023 (1106)
                      ++.+.++ . .        +.+.++|+.+.+.+..+....   ....|+|+|||++ +++.. .+++|.|+|+.+++.+.
T Consensus       275 g~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~---~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~  351 (368)
T 1mda_H          275 TDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQS  351 (368)
T ss_dssp             TTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEE
T ss_pred             CCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC---CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEE
Confidence            9988874 3 2        367799999999999887532   6899999999985 55555 48999999999999998


Q ss_pred             eeC
Q 001295         1024 RIN 1026 (1106)
Q Consensus      1024 ~~~ 1026 (1106)
                      ++.
T Consensus       352 ~I~  354 (368)
T 1mda_H          352 SVE  354 (368)
T ss_dssp             ECC
T ss_pred             EEE
Confidence            887

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.21  E-value=1.1e-09  Score=133.09  Aligned_cols=245  Identities=14%  Similarity=0.116  Sum_probs=154.5

Q ss_pred             CCCCcEEEEEecCCCeEEEEEecc----CcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCC
Q 001295          349 QGSSPMSMDFHPVQQTLLLVGTNV----GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  424 (1106)
Q Consensus       349 h~~~v~~~~~sp~g~~llatg~~d----g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg  424 (1106)
                      |...+..++|||||++|+.+.+..    .+|+|||+.+++.+.. .                 +.+  .....++|+ ||
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~-----------------~~~--~k~~~~~Ws-Dg  185 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-P-----------------LKD--VKFSGISWL-GN  185 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-E-----------------EEE--EESCCCEEE-TT
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-c-----------------cCC--ceeccEEEe-CC
Confidence            456788999999999755544333    4699999999986542 1                 111  113567899 99


Q ss_pred             CEEEEEeCCC-------------eEEEEEccCCcee-eeeeeecc-ccCCeeEEEEcCCCCceEEEEec---CCCcEEEE
Q 001295          425 SLFGVAYSRH-------------IVQIYSYHGGDEV-RQHLEIDA-HVGGVNDIAFSHPNKQLCVITCG---DDKTIKVW  486 (1106)
Q Consensus       425 ~~las~~~d~-------------~v~iwd~~~~~~~-~~~~~l~~-h~~~V~~~~~s~d~~~~~l~s~~---~d~~i~iw  486 (1106)
                      +.|+.++.+.             .|++|++.++..- ..+..... |...+..+.|+|||+.+ +++.+   .+..|++|
T Consensus       186 ~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l-~~~~~~~~~~~~i~~~  264 (693)
T 3iuj_A          186 EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFL-LISAANSTSGNRLYVK  264 (693)
T ss_dssp             TEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEE-EEEEESSSSCCEEEEE
T ss_pred             CEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEE-EEEEccCCCCcEEEEE
Confidence            9999998774             3999999876531 12223334 55567899999999963 33333   23589999


Q ss_pred             eCCCCc-eeEEEeccCCCeEEEeccccCCceEEEEEecC---CeEEEEeCCCCCc--eeEeeCCCCeeEEEEEecCCCeE
Q 001295          487 DATNGA-KQYIFEGHEAPVYSVCPHHKENIQFIFSTALD---GKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRT  560 (1106)
Q Consensus       487 d~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~  560 (1106)
                      |+.++. ....+..+....... +.+.. +.+++....+   +.|..+|+.+...  ...+..+...+.  .|+++    
T Consensus       265 d~~~~~~~~~~l~~~~~~~~~~-~~~~g-~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~----  336 (693)
T 3iuj_A          265 DLSQENAPLLTVQGDLDADVSL-VDNKG-STLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSG----  336 (693)
T ss_dssp             ETTSTTCCCEEEECSSSSCEEE-EEEET-TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEE----
T ss_pred             ECCCCCCceEEEeCCCCceEEE-EeccC-CEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEE----
Confidence            998764 456666666665554 33333 2455555443   6789999887543  123333333222  44444    


Q ss_pred             EEeeeccceeEEEEcCCCCEEEEEEC-CC--eEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCC----Cc
Q 001295          561 YQGFRKRSLGVVQFDTTKNRFLAAGD-DF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND----NG  633 (1106)
Q Consensus       561 ~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d----g~  633 (1106)
                                       +++|+.... ++  .|++|++..+ ....+.... ...+..+.+++++..++....+    +.
T Consensus       337 -----------------g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~  397 (693)
T 3iuj_A          337 -----------------SGYLFAEYMVDATARVEQFDYEGK-RVREVALPG-LGSVSGFNGKHDDPALYFGFENYAQPPT  397 (693)
T ss_dssp             -----------------TTEEEEEEEETTEEEEEEECTTSC-EEEEECCSS-SSEEEECCCCTTCSCEEEEEECSSSCCE
T ss_pred             -----------------CCEEEEEEEECCeeEEEEEECCCC-eeEEeecCC-CceEEeeecCCCCCEEEEEecCCCCCCE
Confidence                             445665543 43  6899998754 444554322 2245566778888777666544    78


Q ss_pred             EEEEEccCC
Q 001295          634 IKILATSDG  642 (1106)
Q Consensus       634 i~iwd~~~~  642 (1106)
                      +..||+.++
T Consensus       398 l~~~d~~~g  406 (693)
T 3iuj_A          398 LYRFEPKSG  406 (693)
T ss_dssp             EEEECTTTC
T ss_pred             EEEEECCCC
Confidence            999988766

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.21  E-value=2.5e-05  Score=92.12  Aligned_cols=526  Identities=10%  Similarity=0.029  Sum_probs=279.6

Q ss_pred             eEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEE-EeCCCeEEEEEcc
Q 001295          364 TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV-AYSRHIVQIYSYH  442 (1106)
Q Consensus       364 ~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las-~~~d~~v~iwd~~  442 (1106)
                      +|+++  ..+.|+..|+++......                  +....-..+..|+|.+++..|.. -..++.|..+++.
T Consensus         8 ~Ll~s--~~~~I~~i~l~~~~~~~~------------------~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~   67 (628)
T 4a0p_A            8 FLLFS--RRADIRRISLETNNNNVA------------------IPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMN   67 (628)
T ss_dssp             EEEEE--ETTEEEEEESSCTTCEEE------------------CCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EEEEE--eCCcEEEEECCCCCcceE------------------EEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECC
Confidence            34543  457888889876543221                  01112346889999996665554 4567889999987


Q ss_pred             CCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEE-
Q 001295          443 GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFST-  521 (1106)
Q Consensus       443 ~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-  521 (1106)
                      +.....   .+.........+++.+.+.. ++++-...+.|.+.++........+.........+++.+. +|.++++- 
T Consensus        68 g~~~~~---v~~~g~~~P~GlAvD~~~~~-LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~-~G~lY~tD~  142 (628)
T 4a0p_A           68 GSALEH---VVEFGLDYPEGMAVDWLGKN-LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPA-EGFMYWTEW  142 (628)
T ss_dssp             SCSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETT-TTEEEEEEC
T ss_pred             CCCcEE---EEeCCCCCcceEEEEeCCCE-EEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccC-CCeEEEeCC
Confidence            654222   12222245778999887775 4566667789999997654332233334455678887653 33444444 


Q ss_pred             ecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEE-ECCCeEEEEECCCcce
Q 001295          522 ALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA-GDDFSIKFWDMDSVQL  600 (1106)
Q Consensus       522 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~  600 (1106)
                      +..+.|...+++........ ........+++.+++                     ..|+.+ ...+.|..+|+.....
T Consensus       143 g~~~~I~r~~~dG~~~~~l~-~~~~~P~GlalD~~~---------------------~~LY~aD~~~~~I~~~d~dG~~~  200 (628)
T 4a0p_A          143 GGKPKIDRAAMDGSERTTLV-PNVGRANGLTIDYAK---------------------RRLYWTDLDTNLIESSNMLGLNR  200 (628)
T ss_dssp             SSSCEEEEEETTSCSCEEEE-CSCSSEEEEEEETTT---------------------TEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCCCEEEEEeCCCCceEEEE-CCCCCcceEEEcccc---------------------CEEEEEECCCCEEEEEcCCCCce
Confidence            22567777776543322222 223334455555443                     345444 3567888888865433


Q ss_pred             eEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcc
Q 001295          601 LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATS  680 (1106)
Q Consensus       601 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  680 (1106)
                       ..+...  ......+++.. +.++++-...+.|...|..++.. ...+......             +           
T Consensus       201 -~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~-~~~l~~~~~~-------------p-----------  251 (628)
T 4a0p_A          201 -EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQN-RTIIQGHLDY-------------V-----------  251 (628)
T ss_dssp             -EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS-CEEEECSCCS-------------C-----------
T ss_pred             -EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCc-eEEEecCCCC-------------c-----------
Confidence             333221  22345677754 44444555577888888766622 1221110000             0           


Q ss_pred             cccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEc-CCCceEE
Q 001295          681 AGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFT-NSGNAIL  759 (1106)
Q Consensus       681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~  759 (1106)
                                                         ..|+++.-........|..       ..+....+++. |.+.+ .
T Consensus       252 -----------------------------------~~i~v~~~~~q~~~n~C~~-------~ng~C~~~C~~~~~~~~-~  288 (628)
T 4a0p_A          252 -----------------------------------MDILVFHSSRQSGWNECAS-------SNGHCSHLCLAVPVGGF-V  288 (628)
T ss_dssp             -----------------------------------CEEEEECGGGSCCCCTTTT-------TGGGCSSEEEEETTTEE-E
T ss_pred             -----------------------------------ceeeeeeecccccceEecc-------CCCCcchhhhcCCCCCe-e
Confidence                                               0111221111000011100       01111112222 21222 2


Q ss_pred             EeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcC
Q 001295          760 ALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMM  839 (1106)
Q Consensus       760 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~  839 (1106)
                      +.+..|...                                        .....+|..   ...+|+.+....|+-..+.
T Consensus       289 C~C~~g~~l----------------------------------------~~d~~~C~~---~~~~Ll~s~~~~i~~i~l~  325 (628)
T 4a0p_A          289 CGCPAHYSL----------------------------------------NADNRTCSA---PTTFLLFSQKSAINRMVID  325 (628)
T ss_dssp             EECSTTCEE----------------------------------------CTTSSCEEC---CSSEEEEEETTEEEEECCC
T ss_pred             EEcCCCcEe----------------------------------------cccCCcCcc---ccceeeeeccceEEEEecc
Confidence            222222111                                        111122322   3456777767777766665


Q ss_pred             CCcee-eeecC-CCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecC------cccCeeEEEEecCCCEE-E
Q 001295          840 TFKTM-ATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG------HSKRITGLAFSHALNVL-V  910 (1106)
Q Consensus       840 ~~~~~-~~~~~-~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~------h~~~V~~l~~s~d~~~l-~  910 (1106)
                      ..... ..+.. .-..+.+++|.+.+++++.+=...+.|+.++.........+..      ....+.+|++...++.| +
T Consensus       326 ~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~  405 (628)
T 4a0p_A          326 EQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYW  405 (628)
T ss_dssp             TTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEE
T ss_pred             cccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEE
Confidence            33211 11221 2345889999985555555555567888888664332222322      23467899999886655 4


Q ss_pred             EEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcC-CCcEEEE-EeCC--eEEEEecCCceEeeecccCCC
Q 001295          911 SSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ-DQIHFLV-VHET--QLAIFETTKLECVKQWVPRES  986 (1106)
Q Consensus       911 s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-dg~~l~~-~~d~--~v~i~d~~~~~~~~~~~~~~h  986 (1106)
                      +-+..+.|.+.+++.. ... .++.   ...   .....+++.| .|.++.+ ....  .|...++..... ..+.. ..
T Consensus       406 td~~~~~I~v~~~~G~-~~~-~l~~---~~l---~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~-~~l~~-~~  475 (628)
T 4a0p_A          406 TCEATNVINVTRLDGR-SVG-VVLK---GEQ---DRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTER-EVLFF-SG  475 (628)
T ss_dssp             EETTTTEEEEEETTSC-EEE-EEEE---CTT---CCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSC-EEEEC-SS
T ss_pred             EcCCCCEEEEEECCCC-eEE-EEEe---CCC---CceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCc-EEEEe-cc
Confidence            6667788999998752 211 1111   111   2568999999 5666666 3333  677777754333 22221 22


Q ss_pred             CCCeeEEEECCCCCEEEEEE-cCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEE
Q 001295          987 SAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVH 1065 (1106)
Q Consensus       987 ~~~v~~l~~s~d~~~l~t~s-~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~ 1065 (1106)
                      -.....|+++++++.|+.+. ..+.|...+++.. ....+..         .....|.+++...  +.++++-...+.|.
T Consensus       476 l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~-~r~~~~~---------~~~~~P~glav~~--~~ly~tD~~~~~i~  543 (628)
T 4a0p_A          476 LSKPIALALDSRLGKLFWADSDLRRIESSDLSGA-NRIVLED---------SNILQPVGLTVFE--NWLYWIDKQQQMIE  543 (628)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEC---------SSCSCEEEEEEET--TEEEEEETTTTEEE
T ss_pred             CCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCC-ceEEEEc---------CCCCCcEEEEEEC--CEEEEEECCCCeEE
Confidence            45679999999877776664 4578999998543 3333321         0112355777764  55666666667777


Q ss_pred             EEeecCCC
Q 001295         1066 VFEPLESE 1073 (1106)
Q Consensus      1066 vW~~~~~~ 1073 (1106)
                      ..+..+|+
T Consensus       544 ~~~k~~G~  551 (628)
T 4a0p_A          544 KIDMTGRE  551 (628)
T ss_dssp             EEETTSSS
T ss_pred             EEECcCCC
Confidence            77777666

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.20  E-value=1.2e-09  Score=120.43  Aligned_cols=248  Identities=13%  Similarity=0.049  Sum_probs=151.8

Q ss_pred             CCcEEEEEecCCCeEEEEEec--cCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEE
Q 001295          351 SSPMSMDFHPVQQTLLLVGTN--VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  428 (1106)
Q Consensus       351 ~~v~~~~~sp~g~~llatg~~--dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  428 (1106)
                      ..+..++++|+|+ ++++...  ++.++||.+.+++..   .+..|.          ....+|-..+..++++++|++++
T Consensus        17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~----------~~~~~~~~~p~gv~~d~~g~L~v   82 (343)
T 2qe8_A           17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLI---PFPPQS----------GNAIITFDTVLGIKSDGNGIVWM   82 (343)
T ss_dssp             SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEE---ESCCCC----------SSCCCCCSCEEEEEECSSSEEEE
T ss_pred             CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCee---cCCCcc----------cCcccceeEeeEEEEcCCCcEEE
Confidence            6899999999999 5776532  343666666544322   221111          01235667899999999998776


Q ss_pred             EEeC-----CCeEEEEEccCCceeeeeeeec----cccCCeeEEEEcCCCCceEEEEec---CCCcEEEEeCCCCceeEE
Q 001295          429 VAYS-----RHIVQIYSYHGGDEVRQHLEID----AHVGGVNDIAFSHPNKQLCVITCG---DDKTIKVWDATNGAKQYI  496 (1106)
Q Consensus       429 s~~~-----d~~v~iwd~~~~~~~~~~~~l~----~h~~~V~~~~~s~d~~~~~l~s~~---~d~~i~iwd~~~~~~~~~  496 (1106)
                      +-..     ++.|.+||+.+++.++.+ .+.    .+...+..+++++++.. ++++..   .++.|.+||+.+++..+.
T Consensus        83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~~r~  160 (343)
T 2qe8_A           83 LDNGNQSKSVPKLVAWDTLNNQLSRVI-YLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLAARV  160 (343)
T ss_dssp             EECHHHHTSCCEEEEEETTTTEEEEEE-ECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred             EcCCCCcCCCCeEEEEECCCCeEEEEE-ECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCEEEE
Confidence            6543     578999999998755432 221    23345789999987654 456655   688999999998887776


Q ss_pred             EeccCCCeE-EEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeee----------
Q 001295          497 FEGHEAPVY-SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR----------  565 (1106)
Q Consensus       497 ~~~h~~~v~-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~----------  565 (1106)
                      +.+|..... ...+.  .++..+.+.+.++.++.|..              .+..++++|+++.++....          
T Consensus       161 ~~~~~~~~~~~~~~~--~~g~~~~~~~~~g~~~~~~~--------------~~~gia~s~dg~~ly~~~~~~~~l~~~~~  224 (343)
T 2qe8_A          161 LQGYPGIAPEDIDLV--IDGVPVQIGQPDGTVIRPHL--------------GVNGIVLDAENEWLYLSPMHSTSMYRIKS  224 (343)
T ss_dssp             CTTCTTTSCCSCCCE--ETTEECBEECTTSCEECCCC--------------CEEEEEECTTSCEEEEEESSCSEEEEEEH
T ss_pred             ecCCCccccccccee--ECCEEEEeccCCCceeceec--------------ccceeEeccCCCEEEEEeCCCCeEEEEEH
Confidence            655422110 01111  12234444444554444321              1234444444443332210          


Q ss_pred             ----------------------ccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCC
Q 001295          566 ----------------------KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC  623 (1106)
Q Consensus       566 ----------------------~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~  623 (1106)
                                            .+....++++++|+.+++...++.|.+||..+++........ ......+++|.++++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-~~~~p~~va~~~~g~  303 (343)
T 2qe8_A          225 ADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-KLSWTDSFNFGSDGY  303 (343)
T ss_dssp             HHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-GGSCEEEEEECTTSC
T ss_pred             HHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-ceecCCeeEECCCCc
Confidence                                  112334788888888888888999999998566644333221 233577899999888


Q ss_pred             EEEEEeCC
Q 001295          624 LLAVSTND  631 (1106)
Q Consensus       624 ~l~~~~~d  631 (1106)
                      ++++.+..
T Consensus       304 l~v~~~~~  311 (343)
T 2qe8_A          304 LYFDCNQL  311 (343)
T ss_dssp             EEEEECCG
T ss_pred             EEEEeCcc
Confidence            77776654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.20  E-value=5.7e-09  Score=113.91  Aligned_cols=228  Identities=12%  Similarity=0.015  Sum_probs=146.0

Q ss_pred             CcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEe
Q 001295          352 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY  431 (1106)
Q Consensus       352 ~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~  431 (1106)
                      -..+.+|+|++..+++++..++.|.+||..+++....                    . ....|.+++|+|+|+++++. 
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~--------------------~-~~~~v~~i~~~~dg~l~v~~-  107 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTVH--------------------A-LPFMGSALAKISDSKQLIAS-  107 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE--------------------E-CSSCEEEEEEEETTEEEEEE-
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEE--------------------E-CCCcceEEEEeCCCeEEEEE-
Confidence            3568899999777888888889999999987754321                    1 13479999999999887765 


Q ss_pred             CCCeEEEEEccCCceeeeeeeec-c-ccCCeeEEEEcCCCCceEEEEecC------CCcEEEEeCCCCceeEEEeccCCC
Q 001295          432 SRHIVQIYSYHGGDEVRQHLEID-A-HVGGVNDIAFSHPNKQLCVITCGD------DKTIKVWDATNGAKQYIFEGHEAP  503 (1106)
Q Consensus       432 ~d~~v~iwd~~~~~~~~~~~~l~-~-h~~~V~~~~~s~d~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~h~~~  503 (1106)
                      .+ .|.+||..+++... +.... + ....+.+++++|+|+  ++++...      .+.|..+|  +++.. .+..+...
T Consensus       108 ~~-gl~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~  180 (326)
T 2ghs_A          108 DD-GLFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISI  180 (326)
T ss_dssp             TT-EEEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESS
T ss_pred             CC-CEEEEECCCCcEEE-EeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcc
Confidence            44 49999998876432 21111 1 123689999999998  4554432      24555555  45433 33334445


Q ss_pred             eEEEeccccCCceEE-EEEecCCeEEEEeCC--CC-Cce--eEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCC
Q 001295          504 VYSVCPHHKENIQFI-FSTALDGKIKAWLYD--NL-GSR--VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT  577 (1106)
Q Consensus       504 v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~--~~-~~~--~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~  577 (1106)
                      ...++|+++  ++.+ ++.+.++.|.+||+.  ++ ...  ..+..         +...         ......+.++++
T Consensus       181 ~~~i~~s~d--g~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~---------~~~~---------~~~p~gi~~d~~  240 (326)
T 2ghs_A          181 PNSICFSPD--GTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFID---------STGI---------KGGMDGSVCDAE  240 (326)
T ss_dssp             EEEEEECTT--SCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEE---------CTTS---------SSEEEEEEECTT
T ss_pred             cCCeEEcCC--CCEEEEEECCCCEEEEEEcccccCCcccCceEEEE---------CCCC---------CCCCCeeEECCC
Confidence            678887654  4544 555567899999986  32 110  01100         0000         012334666667


Q ss_pred             CCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEc-cCCCEEEEEeCC
Q 001295          578 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTND  631 (1106)
Q Consensus       578 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s-~~~~~l~~~~~d  631 (1106)
                      |++.++...++.|.+||. +++.+..+....  ..+.+++|+ ++++.|++++..
T Consensus       241 G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~--~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          241 GHIWNARWGEGAVDRYDT-DGNHIARYEVPG--KQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             SCEEEEEETTTEEEEECT-TCCEEEEEECSC--SBEEEEEEESTTSCEEEEEEBC
T ss_pred             CCEEEEEeCCCEEEEECC-CCCEEEEEECCC--CCcEEEEEecCCCCEEEEEecC
Confidence            766777667789999998 677777776543  358899998 888877665543

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.19  E-value=2.9e-10  Score=124.06  Aligned_cols=177  Identities=11%  Similarity=0.033  Sum_probs=131.0

Q ss_pred             CeEEEEEccCCCEEEEEeCCCeEEEEEccCCce--------eeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEE
Q 001295          414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDE--------VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV  485 (1106)
Q Consensus       414 ~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~--------~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~i  485 (1106)
                      .++.+++++...++++|+.++ +++|++.....        .... ....+.. |++++|  |+.  +|+++ .++.|++
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~-~~~~lp~-V~~l~f--d~~--~L~v~-~~~~l~v  110 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFK-WEKEIPD-VIFVCF--HGD--QVLVS-TRNALYS  110 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCS-EEEECTT-EEEEEE--ETT--EEEEE-ESSEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccce-EEeeCCC-eeEEEE--CCC--EEEEE-cCCcEEE
Confidence            699999999999999999886 66699764331        1111 1224666 999999  887  67777 8899999


Q ss_pred             EeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeee
Q 001295          486 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR  565 (1106)
Q Consensus       486 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~  565 (1106)
                      ||+.+.........|...+.++.+.+.    .+++++.||.|.+||+.+.....    ...                   
T Consensus       111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p----~~av~~~dG~L~v~dl~~~~~~~----~~~-------------------  163 (388)
T 1xip_A          111 LDLEELSEFRTVTSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTKSTKQ----LAQ-------------------  163 (388)
T ss_dssp             EESSSTTCEEEEEECSSCEEEEEECSS----EEEEEETTSEEEEEETTTCCEEE----EEE-------------------
T ss_pred             EEchhhhccCccceeecceeeEEecCC----CEEEEECCCCEEEEEccCCcccc----ccC-------------------
Confidence            999887777777778888888775432    28889999999999998654321    111                   


Q ss_pred             ccceeEEEEcCCCCEEEEEECCCeEEEEECCCcce--eEEEcc----C---CCCCCcCeEEEccCCCEEEEEe
Q 001295          566 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL--LTSIDA----D---GGLPASPRIRFNKDGCLLAVST  629 (1106)
Q Consensus       566 ~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~----~---~~~~~v~~v~~s~~~~~l~~~~  629 (1106)
                        .+.+++|+|+|  ++.|..||.+++|+...++.  ..++..    +   .+...|.++.|.+++.++++-.
T Consensus       164 --~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          164 --NVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             --SEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             --CceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence              45566666666  67899999999999887775  555621    1   1345799999999999888643

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.18  E-value=7.6e-09  Score=112.91  Aligned_cols=225  Identities=12%  Similarity=-0.019  Sum_probs=145.6

Q ss_pred             eEEEEEcCCCceE-EEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCE
Q 001295          746 ISRLIFTNSGNAI-LALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY  824 (1106)
Q Consensus       746 i~~~~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~  824 (1106)
                      ..+.+|+|++..+ ++...++.|..|+...                      +......     ....+.+++++++|++
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~----------------------~~~~~~~-----~~~~v~~i~~~~dg~l  103 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLAS----------------------GRKTVHA-----LPFMGSALAKISDSKQ  103 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTT----------------------TEEEEEE-----CSSCEEEEEEEETTEE
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCC----------------------CcEEEEE-----CCCcceEEEEeCCCeE
Confidence            4577899975544 4444578888887542                      2211110     2346899999999988


Q ss_pred             EEEEeCCeEEEEEcCCCceeeeecC----CCCCeeEEEEecCCCceEEEeeC------CCcEEEEEeecceEEEEecCcc
Q 001295          825 VMSASGGKISLFNMMTFKTMATFMP----PPPAATFLAFHPQDNNIIAIGMD------DSSIQIYNVRVDEVKSKLKGHS  894 (1106)
Q Consensus       825 l~~~sdg~i~vwd~~~~~~~~~~~~----~~~~v~~l~~s~~d~~~la~g~~------dg~v~iwd~~~~~~~~~l~~h~  894 (1106)
                      +++. ++.|.+||..+++.......    ....+..++++| +++++++...      .+.|+.++  +++.. .+..+.
T Consensus       104 ~v~~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~  178 (326)
T 2ghs_A          104 LIAS-DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADI  178 (326)
T ss_dssp             EEEE-TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEE
T ss_pred             EEEE-CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCC
Confidence            7765 45599999988775432221    123588999999 7877665432      24555555  55543 333344


Q ss_pred             cCeeEEEEecCCCEEEE-EcCCCcEEEEeCC--Cc-ccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeEEE
Q 001295          895 KRITGLAFSHALNVLVS-SGADSQLCVWSSD--GW-EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAI  969 (1106)
Q Consensus       895 ~~V~~l~~s~d~~~l~s-~s~Dg~i~vwd~~--~~-~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v~i  969 (1106)
                      .....++|+||++.|+. .+.++.|.+|+++  ++ .......+......   ...+..++++++|.++++. .++.|.+
T Consensus       179 ~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~---~~~p~gi~~d~~G~lwva~~~~~~v~~  255 (326)
T 2ghs_A          179 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGI---KGGMDGSVCDAEGHIWNARWGEGAVDR  255 (326)
T ss_dssp             SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTS---SSEEEEEEECTTSCEEEEEETTTEEEE
T ss_pred             cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCC---CCCCCeeEECCCCCEEEEEeCCCEEEE
Confidence            55789999999987654 4567889999986  54 32221222111111   1245789999999877775 5689999


Q ss_pred             EecCCceEeeecccCCCCCCeeEEEEC-CCCCEEEEEEcC
Q 001295          970 FETTKLECVKQWVPRESSAPITHATFS-CDSQLVYACFLD 1008 (1106)
Q Consensus       970 ~d~~~~~~~~~~~~~~h~~~v~~l~~s-~d~~~l~t~s~D 1008 (1106)
                      ||. +++.+..+.  .+...+++++|+ +|++.|+.++..
T Consensus       256 ~d~-~g~~~~~i~--~~~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          256 YDT-DGNHIARYE--VPGKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             ECT-TCCEEEEEE--CSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             ECC-CCCEEEEEE--CCCCCcEEEEEecCCCCEEEEEecC
Confidence            998 566666655  335579999998 898877655543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.17  E-value=1e-08  Score=123.15  Aligned_cols=203  Identities=12%  Similarity=0.113  Sum_probs=135.9

Q ss_pred             eEEEEecCCCceEEEeeCCC-------------------cEEEEEeecceEEEEecC--cc-------cCeeEEEEecCC
Q 001295          855 TFLAFHPQDNNIIAIGMDDS-------------------SIQIYNVRVDEVKSKLKG--HS-------KRITGLAFSHAL  906 (1106)
Q Consensus       855 ~~l~~s~~d~~~la~g~~dg-------------------~v~iwd~~~~~~~~~l~~--h~-------~~V~~l~~s~d~  906 (1106)
                      ..++++| ++.+|++++.++                   .|..+|..+|+.+-.++.  |.       ....-+....+|
T Consensus       246 ~~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG  324 (677)
T 1kb0_A          246 DSMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAG  324 (677)
T ss_dssp             SCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETT
T ss_pred             cceeEcC-CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCC
Confidence            3578898 677777777664                   499999999998877653  31       122223344577


Q ss_pred             ---CEEEEEcCCCcEEEEeCCCcccccceeeccc--------CCC------------C-------CCCCCCceEEEcCCC
Q 001295          907 ---NVLVSSGADSQLCVWSSDGWEKQKNRFLQIP--------TGR------------T-------PTAQSDTRVQFHQDQ  956 (1106)
Q Consensus       907 ---~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~--------~~~------------~-------~~~~~i~~~~~s~dg  956 (1106)
                         ..|+.++.+|.|.++|..+++..........        .+.            .       .....-..++|+|++
T Consensus       325 ~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~  404 (677)
T 1kb0_A          325 KPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT  404 (677)
T ss_dssp             EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT
T ss_pred             cEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC
Confidence               6899999999999999999876432211100        000            0       000011367899998


Q ss_pred             cEEEEE-eC-------------------------------------------CeEEEEecCCceEeeecccCCCCCCeeE
Q 001295          957 IHFLVV-HE-------------------------------------------TQLAIFETTKLECVKQWVPRESSAPITH  992 (1106)
Q Consensus       957 ~~l~~~-~d-------------------------------------------~~v~i~d~~~~~~~~~~~~~~h~~~v~~  992 (1106)
                      .++.+. .+                                           +.|..||+.+++.+-.+..   ..++..
T Consensus       405 ~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~  481 (677)
T 1kb0_A          405 GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH---VSPWNG  481 (677)
T ss_dssp             TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE---SSSCCC
T ss_pred             CEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC---CCCCcC
Confidence            887763 21                                           6799999999998766643   334555


Q ss_pred             EEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEE-EEeC-----------
Q 001295          993 ATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFA-LGLS----------- 1060 (1106)
Q Consensus       993 l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~-t~~~----------- 1060 (1106)
                      ..++.++.++++++.||.+++||..+|+.+..+.    .+.+     +...-+.|.. +|+.++ +.+.           
T Consensus       482 g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~----~~~~-----~~~~p~~y~~-~G~~~v~~~~G~~~~~~~~~~~  551 (677)
T 1kb0_A          482 GTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP----TGTG-----VVAAPSTYMV-DGRQYVSVAVGWGGVYGLAARA  551 (677)
T ss_dssp             CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE----CSSC-----CCSCCEEEEE-TTEEEEEEEECCCHHHHHHCCS
T ss_pred             cceEeCCCEEEEECCCCcEEEEECCCCceeeeee----CCCC-----cccCCEEEEe-CCEEEEEEeccCCccccccccc
Confidence            5677788899999999999999999999999887    3333     2222456665 566544 3222           


Q ss_pred             -----CCcEEEEeecC
Q 001295         1061 -----DGGVHVFEPLE 1071 (1106)
Q Consensus      1061 -----Dg~v~vW~~~~ 1071 (1106)
                           .+.+.++.+..
T Consensus       552 ~~~~~~~~l~~f~l~~  567 (677)
T 1kb0_A          552 TERQGPGTVYTFVVGG  567 (677)
T ss_dssp             CSCCCCCEEEEEEETC
T ss_pred             cccCCCCeEEEEeccc
Confidence                 36788888874

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.16  E-value=4.3e-09  Score=126.35  Aligned_cols=80  Identities=11%  Similarity=0.054  Sum_probs=59.8

Q ss_pred             CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcc-cCeeEEEEecCCCEE
Q 001295          831 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS-KRITGLAFSHALNVL  909 (1106)
Q Consensus       831 g~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~~s~d~~~l  909 (1106)
                      |.|..||+.+++.+..+. +...+....++. ++.++++++.||.+++||..+|+++..+.... ....-+.|..+|+.+
T Consensus       457 g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~-~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~  534 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVE-HVSPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQY  534 (677)
T ss_dssp             EEEEEEETTTTEEEEEEE-ESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             cEEEEEeCCCCcEEeecC-CCCCCcCcceEe-CCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEE
Confidence            679999999999887765 333445555666 66788889999999999999999998887443 333456777888755


Q ss_pred             EEE
Q 001295          910 VSS  912 (1106)
Q Consensus       910 ~s~  912 (1106)
                      +..
T Consensus       535 v~~  537 (677)
T 1kb0_A          535 VSV  537 (677)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.14  E-value=5.7e-09  Score=126.83  Aligned_cols=242  Identities=11%  Similarity=0.087  Sum_probs=157.7

Q ss_pred             cccceEEEEEcCCCceEEEeec-----CceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEE
Q 001295          742 RATKISRLIFTNSGNAILALAS-----NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF  816 (1106)
Q Consensus       742 ~~~~i~~~~~s~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l  816 (1106)
                      +...+..++|||||++++.+.+     +..|++||+.                      +|..+...+    .......+
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~----------------------tg~~~~~~~----~~~k~~~~  180 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVE----------------------SKQPLETPL----KDVKFSGI  180 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETT----------------------TCSEEEEEE----EEEESCCC
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECC----------------------CCCCCcccc----CCceeccE
Confidence            4557889999999998885443     2467766655                      444332211    11112567


Q ss_pred             EEecCCCEEEEEe-CC-------------eEEEEEcCCCce----eeeecC-CCCCeeEEEEecCCCceEEEeeC----C
Q 001295          817 ALSKNDSYVMSAS-GG-------------KISLFNMMTFKT----MATFMP-PPPAATFLAFHPQDNNIIAIGMD----D  873 (1106)
Q Consensus       817 ~~s~~~~~l~~~s-dg-------------~i~vwd~~~~~~----~~~~~~-~~~~v~~l~~s~~d~~~la~g~~----d  873 (1106)
                      +|+ |++.|+.++ +.             .|++|++.+...    +..... +......+.||| |+++|+....    +
T Consensus       181 ~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~  258 (693)
T 3iuj_A          181 SWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE-DDRFLLISAANSTSG  258 (693)
T ss_dssp             EEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT-TSCEEEEEEESSSSC
T ss_pred             EEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC-CCCEEEEEEccCCCC
Confidence            899 999998887 53             399999987543    222333 444578899999 7887755432    2


Q ss_pred             CcEEEEEeecce-EEEEecCcccCeeEEEEecCCCEEEE-EcCC---CcEEEEeCCCcccccceeecccCCCCCCCCCCc
Q 001295          874 SSIQIYNVRVDE-VKSKLKGHSKRITGLAFSHALNVLVS-SGAD---SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDT  948 (1106)
Q Consensus       874 g~v~iwd~~~~~-~~~~l~~h~~~V~~l~~s~d~~~l~s-~s~D---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~  948 (1106)
                      ..|+++|+.++. ....+..+....... |+++|..|+. ...|   +.|.+|++.+++......+..   +..   .+.
T Consensus       259 ~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~---~~~---~~~  331 (693)
T 3iuj_A          259 NRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIP---ERQ---QVL  331 (693)
T ss_dssp             CEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC---CCS---SCE
T ss_pred             cEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEec---CCC---CEE
Confidence            489999987763 455666677666665 6666666554 4443   579999998865432222221   111   223


Q ss_pred             eEEEcCCCcEEEEE--eCC--eEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcC----CeEEEEEcCCce
Q 001295          949 RVQFHQDQIHFLVV--HET--QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD----ATVCVFSAANLK 1020 (1106)
Q Consensus       949 ~~~~s~dg~~l~~~--~d~--~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~D----g~i~vwd~~~~~ 1020 (1106)
                        .|++++++|+..  .++  .|++||+.++.. ..+.. .+...+..+.++++++.|+....+    ++|+.||+.+++
T Consensus       332 --~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~-~~l~~-p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          332 --TVHSGSGYLFAEYMVDATARVEQFDYEGKRV-REVAL-PGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             --EEEEETTEEEEEEEETTEEEEEEECTTSCEE-EEECC-SSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             --EEEEECCEEEEEEEECCeeEEEEEECCCCee-EEeec-CCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence              899999988873  444  689999985543 33332 224567788889999887766555    889999998886


Q ss_pred             eE
Q 001295         1021 LR 1022 (1106)
Q Consensus      1021 ~~ 1022 (1106)
                      ..
T Consensus       408 ~~  409 (693)
T 3iuj_A          408 IS  409 (693)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.14  E-value=7.7e-09  Score=111.81  Aligned_cols=229  Identities=12%  Similarity=0.040  Sum_probs=151.0

Q ss_pred             ccceEEEEEcCCCceE-EEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecC
Q 001295          743 ATKISRLIFTNSGNAI-LALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  821 (1106)
Q Consensus       743 ~~~i~~~~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~  821 (1106)
                      .......+|+++++.| ++...++.|..|+..                       +....  +..  +...+..++++++
T Consensus        44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-----------------------g~~~~--~~~--~~~~~~gl~~d~d   96 (305)
T 3dr2_A           44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-----------------------GTVDV--LLD--ATAFTNGNAVDAQ   96 (305)
T ss_dssp             CSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-----------------------SCEEE--EEE--SCSCEEEEEECTT
T ss_pred             CcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-----------------------CCEEE--EeC--CCCccceeeECCC
Confidence            3456788999999844 555557888888642                       11110  000  3456889999999


Q ss_pred             CCEEEEEe-CCeEEEEEcCCCceeeeec---CC-CCCeeEEEEecCCCceEEE----eeC-------------CCcEEEE
Q 001295          822 DSYVMSAS-GGKISLFNMMTFKTMATFM---PP-PPAATFLAFHPQDNNIIAI----GMD-------------DSSIQIY  879 (1106)
Q Consensus       822 ~~~l~~~s-dg~i~vwd~~~~~~~~~~~---~~-~~~v~~l~~s~~d~~~la~----g~~-------------dg~v~iw  879 (1106)
                      |+++++.. ++.|.+|+.. ++......   +. ...+..+++++ +|+++++    |..             .+.|+.|
T Consensus        97 G~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~  174 (305)
T 3dr2_A           97 QRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRL  174 (305)
T ss_dssp             SCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEE
T ss_pred             CCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEE
Confidence            99776655 5789999986 44322211   11 23467899999 8888886    432             2567777


Q ss_pred             EeecceEEEEecCcccCeeEEEEecCCCEEEEEcCC------CcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEc
Q 001295          880 NVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH  953 (1106)
Q Consensus       880 d~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  953 (1106)
                      |..+++.....  +....+.++|+||++.|+.+...      +.|.+|++...............     ...+..++++
T Consensus       175 d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~-----~~~pdgi~~d  247 (305)
T 3dr2_A          175 PPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVP-----DGLPDGFCVD  247 (305)
T ss_dssp             CSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCS-----SSCCCSEEEC
T ss_pred             cCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECC-----CCCCCeEEEC
Confidence            77666654333  44567889999999988777665      68999998764311111111111     1345789999


Q ss_pred             CCCcEEEEEeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEE
Q 001295          954 QDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVC 1012 (1106)
Q Consensus       954 ~dg~~l~~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~ 1012 (1106)
                      ++|++.++. .+.|.+|+.. ++.+..+...   ..+.+++|+++++.|+.++.++..+
T Consensus       248 ~~G~lwv~~-~~gv~~~~~~-g~~~~~~~~~---~~~~~~~f~~d~~~L~it~~~~l~~  301 (305)
T 3dr2_A          248 RGGWLWSSS-GTGVCVFDSD-GQLLGHIPTP---GTASNCTFDQAQQRLFITGGPCLWM  301 (305)
T ss_dssp             TTSCEEECC-SSEEEEECTT-SCEEEEEECS---SCCCEEEECTTSCEEEEEETTEEEE
T ss_pred             CCCCEEEec-CCcEEEECCC-CCEEEEEECC---CceeEEEEeCCCCEEEEEcCCeEEE
Confidence            999955555 4569999984 6666666532   2589999999999988887665433

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.13  E-value=3.4e-08  Score=110.49  Aligned_cols=158  Identities=8%  Similarity=0.043  Sum_probs=99.5

Q ss_pred             CCCEEEEEeCCCeEEEEEccCCceeeeeeeeccc-------cCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeE
Q 001295          423 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAH-------VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY  495 (1106)
Q Consensus       423 dg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h-------~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~  495 (1106)
                      ++..+.+++.++.|..+|..+|+.+-.. .+...       ...+.+.... ++.  .++.++.++.|..+|.++|+.+.
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~-~~~~~~~~~~~~~~~~~~~~~~-~~~--~v~v~~~~g~l~a~d~~tG~~~W  127 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSV-SLAEKDGWFSKEPALLSGGVTV-SGG--HVYIGSEKAQVYALNTSDGTVAW  127 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEE-ECCC---CCSCCCCCEEEEEEE-ETT--EEEEEETTSEEEEEETTTCCEEE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeee-cCccccccccccCcccccCceE-eCC--EEEEEcCCCEEEEEECCCCCEEE
Confidence            4667888888999999999999876432 12111       1223222222 334  46777889999999999999887


Q ss_pred             EEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEc
Q 001295          496 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD  575 (1106)
Q Consensus       496 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~  575 (1106)
                      ..............  . + ..++.++.++.|..+|..+++............ .  ......             ....
T Consensus       128 ~~~~~~~~~~~p~~--~-~-~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~-~--~~~~~~-------------~~~~  187 (376)
T 3q7m_A          128 QTKVAGEALSRPVV--S-D-GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSL-S--LRGESA-------------PTTA  187 (376)
T ss_dssp             EEECSSCCCSCCEE--E-T-TEEEEECTTSEEEEEETTTCCEEEEEECCC--------CCCCC-------------CEEE
T ss_pred             EEeCCCceEcCCEE--E-C-CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCce-e--ecCCCC-------------cEEE
Confidence            77644322221121  1 2 368888899999999999888776655432211 0  000000             0011


Q ss_pred             CCCCEEEEEECCCeEEEEECCCcceeEEEcc
Q 001295          576 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA  606 (1106)
Q Consensus       576 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  606 (1106)
                        +..++.+..++.|..+|..+|+.+.....
T Consensus       188 --~~~v~~g~~~g~l~~~d~~tG~~~w~~~~  216 (376)
T 3q7m_A          188 --FGAAVVGGDNGRVSAVLMEQGQMIWQQRI  216 (376)
T ss_dssp             --TTEEEECCTTTEEEEEETTTCCEEEEEEC
T ss_pred             --CCEEEEEcCCCEEEEEECCCCcEEEEEec
Confidence              23577788899999999999988877653

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.12  E-value=2.6e-05  Score=91.94  Aligned_cols=503  Identities=10%  Similarity=0.056  Sum_probs=258.3

Q ss_pred             CcCeEEEEEccCCCEEEEEe-CCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCC
Q 001295          412 GVSVNRVIWSPDGSLFGVAY-SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN  490 (1106)
Q Consensus       412 ~~~V~~l~~spdg~~las~~-~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~  490 (1106)
                      -.....|+|++.+..|..+. ..+.|..+++.+......  .+.........+++.+.+.. ++++-...+.|.+.++..
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~--v~~~~~~~P~GlAvD~~~~~-ly~~d~~~~~I~v~~~dG  115 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN--VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDG  115 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEE--EECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEE--EEeCCCCCcCeEEEEecCCE-EEEEeCCCCEEEEEECCC
Confidence            34578999999766665554 567899999876532111  22222356889999997765 566667788999999765


Q ss_pred             CceeEEEeccCCCeEEEeccccCCceEEEEEe-cCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccce
Q 001295          491 GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL  569 (1106)
Q Consensus       491 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i  569 (1106)
                      ......+.........+++.+.. |.++++-. ..+.|...+++.................+++.+++.           
T Consensus       116 ~~~~~l~~~~l~~P~~Iavdp~~-g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~-----------  183 (619)
T 3s94_A          116 SLRKVLFWQELDQPRAIALDPSS-GFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQ-----------  183 (619)
T ss_dssp             CSCEEEECSSCSCCCCEEEETTT-TEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTT-----------
T ss_pred             CCEEEEEeCCCCCCceEEEecCC-CeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCC-----------
Confidence            43333332344456677765442 34444442 235666555553322222222233344555554433           


Q ss_pred             eEEEEcCCCCEEEEE-ECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhh
Q 001295          570 GVVQFDTTKNRFLAA-GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRT  648 (1106)
Q Consensus       570 ~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  648 (1106)
                                .|+.+ ...+.|...|+............  ......+++..+ .++++-...+.|...|..++.. ...
T Consensus       184 ----------~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~-~~~  249 (619)
T 3s94_A          184 ----------KLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED-ILYWTDWSTHSILACNKYTGEG-LRE  249 (619)
T ss_dssp             ----------EEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESSSCCC-CEE
T ss_pred             ----------EEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcc-cEE
Confidence                      44444 34567888887654333222211  223457787665 4444555677888888877632 111


Q ss_pred             hcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCC-
Q 001295          649 FENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELS-  727 (1106)
Q Consensus       649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~-  727 (1106)
                      +.....             .+                                              ..|.++...... 
T Consensus       250 i~~~~~-------------~p----------------------------------------------~~i~v~~~~~qp~  270 (619)
T 3s94_A          250 IHSDIF-------------SP----------------------------------------------MDIHAFSQQRQPN  270 (619)
T ss_dssp             CCSCCC-------------CC----------------------------------------------SEEEECCGGGSCC
T ss_pred             EecCCC-------------CC----------------------------------------------cEEEEEccccCCC
Confidence            111000             00                                              011111110000 


Q ss_pred             CCccceecccCccccccceEEEEE-cCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCC
Q 001295          728 EPNQCRSLRLPENLRATKISRLIF-TNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  806 (1106)
Q Consensus       728 ~~~~~~~~~~~~~~~~~~i~~~~~-s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  806 (1106)
                      ....|..       ..+....+++ +|.....-+.+.+|..                                +      
T Consensus       271 ~~n~C~~-------~ng~Cs~lCl~~~~~~~~~C~C~~g~~--------------------------------l------  305 (619)
T 3s94_A          271 ATNPCGI-------DNGGCSHLCLMSPVKPFYQCACPTGVK--------------------------------L------  305 (619)
T ss_dssp             CCCTTTT-------TGGGCSSEEEECSSTTSEEEECCTTCC--------------------------------B------
T ss_pred             ccccccC-------CCCcccceEECCCCCCCceEeCCchhe--------------------------------e------
Confidence            0000000       0011111222 1221111122222110                                0      


Q ss_pred             CCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCCceee-eec-CCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecc
Q 001295          807 SNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMA-TFM-PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD  884 (1106)
Q Consensus       807 ~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~-~~~-~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~  884 (1106)
                        .....+|.  .....+|+.+..+.|+..++....... .+. ..-..+.+++|.+.++.++.+-...+.|+.+++...
T Consensus       306 --~~d~~~C~--~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~  381 (619)
T 3s94_A          306 --LENGKTCK--DGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGS  381 (619)
T ss_dssp             --CTTSSCBC--SSCSEEEEEEESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             --cccCcccC--CCCceEEEEEcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCC
Confidence              00011111  112346666777788888887654221 111 123457899999855666665556788999887754


Q ss_pred             eEEEEecCcccCeeEEEEecCCC-EEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCC-CcEEEEE
Q 001295          885 EVKSKLKGHSKRITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-QIHFLVV  962 (1106)
Q Consensus       885 ~~~~~l~~h~~~V~~l~~s~d~~-~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~d-g~~l~~~  962 (1106)
                      .....+........+|++...+. +.++-+..+.|.+.+++....  ..+..  .+    -.....+++.|. |.+..+-
T Consensus       382 ~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~--~~l~~--~~----l~~P~~iavdp~~G~ly~tD  453 (619)
T 3s94_A          382 GSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMR--KILIS--ED----LEEPRAIVLDPMVGYMYWTD  453 (619)
T ss_dssp             SCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEEC--TT----CCSEEEEEEETTTTEEEEEE
T ss_pred             ccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeE--EEEEE--CC----CCCeeeEEEEcCCCcEEEec
Confidence            33333333345678899987554 555556678899999876321  11111  11    135689999997 5544442


Q ss_pred             --eCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEE-cCCeEEEEEcCCceeEEeeCCCcccCCCCCCCC
Q 001295          963 --HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSSN 1039 (1106)
Q Consensus       963 --~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s-~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1106)
                        ....|...++..... ..+. ...-.....|++++++..|+.+. ..+.|..++++.......+..  .+        
T Consensus       454 ~g~~~~I~r~~~dG~~~-~~l~-~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~--~l--------  521 (619)
T 3s94_A          454 WGEIPKIERAALDGSDR-VVLV-NTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVED--KI--------  521 (619)
T ss_dssp             CSSSCEEEEEETTSCSC-EEEE-CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEEC--CC--------
T ss_pred             CCCCCEEEEEccCCCcc-EEEE-eCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEecc--CC--------
Confidence              236777777654332 2222 12245788999999777776664 447799999865433222210  01        


Q ss_pred             ccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCC
Q 001295         1040 VHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus      1040 v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
                      -.|.+++...  +.++++-...+.|..-+..+++
T Consensus       522 ~~P~glav~~--~~ly~tD~~~~~I~~~~k~~g~  553 (619)
T 3s94_A          522 PHIFGFTLLG--DYVYWTDWQRRSIERVHKRSAE  553 (619)
T ss_dssp             CSSCCEEEET--TEEEEECTTSSCEEEEESSSCC
T ss_pred             CCcEEEEEEC--CEEEEeecCCCeEEEEEcCCCc
Confidence            1233566553  3455555556677777777765

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.12  E-value=7.3e-09  Score=124.67  Aligned_cols=79  Identities=13%  Similarity=0.066  Sum_probs=59.5

Q ss_pred             CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccC-eeEEEEecCCCEE
Q 001295          831 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR-ITGLAFSHALNVL  909 (1106)
Q Consensus       831 g~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~s~d~~~l  909 (1106)
                      |.|..||+.+++.+..+..+. .+..-.++. .+.++++|+.||.|+.||..+|+.+.+++...+. ..-+.|..||+..
T Consensus       455 g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qy  532 (689)
T 1yiq_A          455 GKLIAWDPVKQQAAWEVPYVT-IFNGGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQY  532 (689)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             eeEEEEECCCCCeEeEccCCC-CccCccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEE
Confidence            679999999999887776443 233335555 6678889999999999999999999888755433 2457788888754


Q ss_pred             EE
Q 001295          910 VS  911 (1106)
Q Consensus       910 ~s  911 (1106)
                      ++
T Consensus       533 v~  534 (689)
T 1yiq_A          533 VT  534 (689)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.10  E-value=1.9e-08  Score=121.00  Aligned_cols=187  Identities=15%  Similarity=0.154  Sum_probs=124.2

Q ss_pred             EEEEecCCCceEEEeeCCCc-------------------EEEEEeecceEEEEecC--cc-------cCeeEEEEecCCC
Q 001295          856 FLAFHPQDNNIIAIGMDDSS-------------------IQIYNVRVDEVKSKLKG--HS-------KRITGLAFSHALN  907 (1106)
Q Consensus       856 ~l~~s~~d~~~la~g~~dg~-------------------v~iwd~~~~~~~~~l~~--h~-------~~V~~l~~s~d~~  907 (1106)
                      .++++| +..++++++.++.                   |..||..+|+.+-.++.  |.       ..+.......+|+
T Consensus       239 ~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~  317 (689)
T 1yiq_A          239 SFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGK  317 (689)
T ss_dssp             CEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred             ceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCc
Confidence            678998 6778888887764                   99999999999877754  22       1122222333665


Q ss_pred             ---EEEEEcCCCcEEEEeCCCcccccceeecc------------------------cCCC-------CCCCCCCceEEEc
Q 001295          908 ---VLVSSGADSQLCVWSSDGWEKQKNRFLQI------------------------PTGR-------TPTAQSDTRVQFH  953 (1106)
Q Consensus       908 ---~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~------------------------~~~~-------~~~~~~i~~~~~s  953 (1106)
                         .|+.++.+|.++++|..+++......+..                        ..+.       ......-..++|+
T Consensus       318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d  397 (689)
T 1yiq_A          318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYN  397 (689)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEE
T ss_pred             EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceEC
Confidence               78999999999999999987642111100                        0000       0000012347899


Q ss_pred             CCCcEEEEE-e---------------------------------------------CCeEEEEecCCceEeeecccCCCC
Q 001295          954 QDQIHFLVV-H---------------------------------------------ETQLAIFETTKLECVKQWVPRESS  987 (1106)
Q Consensus       954 ~dg~~l~~~-~---------------------------------------------d~~v~i~d~~~~~~~~~~~~~~h~  987 (1106)
                      |+..++.+. .                                             ++.|..||+.+++.+-.+..   .
T Consensus       398 p~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~---~  474 (689)
T 1yiq_A          398 PDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY---V  474 (689)
T ss_dssp             TTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE---S
T ss_pred             CCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccC---C
Confidence            988877763 1                                             36799999999998766653   2


Q ss_pred             CCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEE
Q 001295          988 APITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFA 1056 (1106)
Q Consensus       988 ~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~ 1056 (1106)
                      .++..-.++..+.++++|+.||.|+.||..+|+.+.++.    ++.+     +...-+.|.. ||+.++
T Consensus       475 ~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~----~~~~-----~~~~p~ty~~-~G~qyv  533 (689)
T 1yiq_A          475 TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQP----AASG-----VMAAPVTYSV-DGEQYV  533 (689)
T ss_dssp             SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE----CSSC-----CCSCCEEEEE-TTEEEE
T ss_pred             CCccCccceECCCEEEEECCCCcEEEEECCCCccceeee----CCCC-----cccCceEEEE-CCEEEE
Confidence            233334566678899999999999999999999998877    3433     2222366665 566543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.09  E-value=4.8e-08  Score=106.26  Aligned_cols=238  Identities=10%  Similarity=0.073  Sum_probs=152.2

Q ss_pred             CCCceEEEeec-CceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-C
Q 001295          753 NSGNAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-G  830 (1106)
Q Consensus       753 ~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-d  830 (1106)
                      .+++++++.+. ++.|.++|+.+....+....  .     .+  ...+..  -.   .......+.++|+| +++++. +
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k--~-----ie--~~~~~~--~~---g~s~Ph~~~~~pdG-i~Vs~~g~  157 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIK--V-----IE--PEEVKK--VS---GYSRLHTVHCGPDA-IYISALGN  157 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEE--E-----EC--HHHHHH--HH---CEEEEEEEEECSSC-EEEEEEEE
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeee--e-----ec--hhhccc--cc---CCCcccceeECCCe-EEEEcCCC
Confidence            77887776665 68899998753221111000  0     00  000000  00   11234567888999 666554 4


Q ss_pred             ------CeEEEEEcCCCceeeeecCCCC---CeeEEEEecCCCceEEEee-------------------CCCcEEEEEee
Q 001295          831 ------GKISLFNMMTFKTMATFMPPPP---AATFLAFHPQDNNIIAIGM-------------------DDSSIQIYNVR  882 (1106)
Q Consensus       831 ------g~i~vwd~~~~~~~~~~~~~~~---~v~~l~~s~~d~~~la~g~-------------------~dg~v~iwd~~  882 (1106)
                            |.|.++|..+++.+.++.....   --..+-|+| +++.+++..                   .+.+|.+||+.
T Consensus       158 ~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~  236 (462)
T 2ece_A          158 EEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLR  236 (462)
T ss_dssp             TTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETT
T ss_pred             cCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECC
Confidence                  6899999999999988863322   234588899 888877774                   36899999999


Q ss_pred             cceEEEEecCc--ccCeeEEEE--ecCCCEEEEEcC------CCcEEEEeCCCcccccceeecccCCCCC----------
Q 001295          883 VDEVKSKLKGH--SKRITGLAF--SHALNVLVSSGA------DSQLCVWSSDGWEKQKNRFLQIPTGRTP----------  942 (1106)
Q Consensus       883 ~~~~~~~l~~h--~~~V~~l~~--s~d~~~l~s~s~------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~----------  942 (1106)
                      +++.+.++..-  ......+.|  +|+++++..++.      +++|.+|..+.++......+.+......          
T Consensus       237 ~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f  316 (462)
T 2ece_A          237 KRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPF  316 (462)
T ss_dssp             TTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGG
T ss_pred             CCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccccccc
Confidence            99888887652  123445655  999999887774      5688887766543222222211110000          


Q ss_pred             --CCCCCceEEEcCCCcEEEEE--eCCeEEEEecC---CceEeeecccCCC------------CCCeeEEEECCCCCEEE
Q 001295          943 --TAQSDTRVQFHQDQIHFLVV--HETQLAIFETT---KLECVKQWVPRES------------SAPITHATFSCDSQLVY 1003 (1106)
Q Consensus       943 --~~~~i~~~~~s~dg~~l~~~--~d~~v~i~d~~---~~~~~~~~~~~~h------------~~~v~~l~~s~d~~~l~ 1003 (1106)
                        .......+.+|+||++|.++  ..+.|.+||+.   +.+.+..+..++.            ......+++||||++|+
T Consensus       317 ~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~Ly  396 (462)
T 2ece_A          317 KAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVY  396 (462)
T ss_dssp             TEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEE
T ss_pred             ccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEE
Confidence              01357899999999999996  56799999985   3456666654421            01368899999999999


Q ss_pred             EEE
Q 001295         1004 ACF 1006 (1106)
Q Consensus      1004 t~s 1006 (1106)
                      ++.
T Consensus       397 VaN  399 (462)
T 2ece_A          397 VTN  399 (462)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            888

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.08  E-value=4.2e-08  Score=106.70  Aligned_cols=230  Identities=11%  Similarity=0.122  Sum_probs=147.7

Q ss_pred             cCCCEEEEEe--CCeEEEEEcCCC----ceeeeec-------CCCCCeeEEEEecCCCceEEEeeCC------CcEEEEE
Q 001295          820 KNDSYVMSAS--GGKISLFNMMTF----KTMATFM-------PPPPAATFLAFHPQDNNIIAIGMDD------SSIQIYN  880 (1106)
Q Consensus       820 ~~~~~l~~~s--dg~i~vwd~~~~----~~~~~~~-------~~~~~v~~l~~s~~d~~~la~g~~d------g~v~iwd  880 (1106)
                      +++++|++.+  ++.|.++|+.+.    +...++.       .....-..+.++| ++ +++++..+      |.|.++|
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~vlD  170 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGGILMLD  170 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCEEEEEC
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCeEEEEE
Confidence            7889888887  689999999754    4445452       0112345678889 77 66666555      7899999


Q ss_pred             eecceEEEEecCccc---CeeEEEEecCCCEEEEEc-------------------CCCcEEEEeCCCcccccceeecccC
Q 001295          881 VRVDEVKSKLKGHSK---RITGLAFSHALNVLVSSG-------------------ADSQLCVWSSDGWEKQKNRFLQIPT  938 (1106)
Q Consensus       881 ~~~~~~~~~l~~h~~---~V~~l~~s~d~~~l~s~s-------------------~Dg~i~vwd~~~~~~~~~~~~~~~~  938 (1106)
                      ..+++++.++.....   --..+.|+|+++.+++..                   .+.+|.+||+.+++...  .+....
T Consensus       171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~--tI~vg~  248 (462)
T 2ece_A          171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH--SLTLGE  248 (462)
T ss_dssp             TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE--EEESCT
T ss_pred             CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee--EEecCC
Confidence            999999998863222   234588999999999885                   36789999999854322  122210


Q ss_pred             CCCCCCCCCceEEE--cCCCcEEEEE-------eCCeEEEEecCCceE--eeecccCC----------------CCCCee
Q 001295          939 GRTPTAQSDTRVQF--HQDQIHFLVV-------HETQLAIFETTKLEC--VKQWVPRE----------------SSAPIT  991 (1106)
Q Consensus       939 ~~~~~~~~i~~~~~--s~dg~~l~~~-------~d~~v~i~d~~~~~~--~~~~~~~~----------------h~~~v~  991 (1106)
                      ..    .....+.|  +|+++++.++       .+++|.+|..+.++.  ...+....                -.....
T Consensus       249 ~g----~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa  324 (462)
T 2ece_A          249 EN----RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVT  324 (462)
T ss_dssp             TE----EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCC
T ss_pred             CC----CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCcee
Confidence            00    12345555  9999988873       345777665544321  11110000                024578


Q ss_pred             EEEECCCCCEEEEEEc-CCeEEEEEcC---CceeEEeeCCCccc-----CCCCCCCCccceEEEEeCCCCCEEEEEe
Q 001295          992 HATFSCDSQLVYACFL-DATVCVFSAA---NLKLRCRINPSAYL-----PAGVSSSNVHPLVIAAHPQEPNEFALGL 1059 (1106)
Q Consensus       992 ~l~~s~d~~~l~t~s~-Dg~i~vwd~~---~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~d~~~l~t~~ 1059 (1106)
                      .|.+|+||++|+++.. .+.|.+||+.   +.+++..+......     +.| ......|-.+.++| ||++|+++.
T Consensus       325 ~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G-~~~~ggPr~~~lSp-DGk~LyVaN  399 (462)
T 2ece_A          325 DIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAG-HKLTGAPQMLEISR-DGRRVYVTN  399 (462)
T ss_dssp             CEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTS-CCCCSCCCCEEECT-TSSEEEEEC
T ss_pred             EEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccccccc-ccCCCCCCEEEEcC-CCCEEEEEc
Confidence            8999999999987775 6899999985   34566555522110     000 00011355799999 789888887

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.05  E-value=7.3e-09  Score=112.96  Aligned_cols=249  Identities=11%  Similarity=-0.025  Sum_probs=153.4

Q ss_pred             eEEEEEeccC----cEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEe--------
Q 001295          364 TLLLVGTNVG----DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY--------  431 (1106)
Q Consensus       364 ~llatg~~dg----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~--------  431 (1106)
                      +++++...++    +|.+.|..+++.+.+..                  .+. .+  .+++||||++|.++.        
T Consensus        33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~------------------vG~-~P--~i~~spDg~~lyVan~~~~r~~~   91 (368)
T 1mda_H           33 RSHITLPAYFAGTTENWVSCAGCGVTLGHSL------------------GAF-LS--LAVAGHSGSDFALASTSFARSAK   91 (368)
T ss_dssp             EEEEEECTTTCSSEEEEEEETTTTEEEEEEE------------------ECT-TC--EEEECTTSSCEEEEEEEETTTTS
T ss_pred             eEEEECCccCCccceEEEEECCCCeEEEEEe------------------CCC-CC--ceEECCCCCEEEEEccccccccc
Confidence            3566655555    88899999999887522                  232 24  799999999999886        


Q ss_pred             --CCCeEEEEEccCCceeeeeeeecc-c----cCCeeEEEEcCCCCceEEEEecCCCcEEE--EeCCCCceeEEEeccCC
Q 001295          432 --SRHIVQIYSYHGGDEVRQHLEIDA-H----VGGVNDIAFSHPNKQLCVITCGDDKTIKV--WDATNGAKQYIFEGHEA  502 (1106)
Q Consensus       432 --~d~~v~iwd~~~~~~~~~~~~l~~-h----~~~V~~~~~s~d~~~~~l~s~~~d~~i~i--wd~~~~~~~~~~~~h~~  502 (1106)
                        .++.|.+||..+++.+..+. +.+ .    ......++|+|||++++++..+.+..|.+  +|+.+   +.++..- +
T Consensus        92 G~~~~~VsviD~~T~~vv~~I~-v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~  166 (368)
T 1mda_H           92 GKRTDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-S  166 (368)
T ss_dssp             SSEEEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-S
T ss_pred             CCCCCEEEEEECCCCCEEEEEE-CCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-C
Confidence              36889999999998876442 210 0    12467899999999632222233567888  99877   4444321 1


Q ss_pred             CeEEEeccccCCceEEEEEecCCeEEEEeCCC----CCcee-----EeeCCCCeeEEEEEecCCCeEEEe----------
Q 001295          503 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDN----LGSRV-----DYEAPGRWCTTMAYSADGTRTYQG----------  563 (1106)
Q Consensus       503 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~----~~~~~-----~~~~~~~~v~~~~~s~~~~~~~~~----------  563 (1106)
                      .   ..+.+... ..+++.+.||.+.+.|+.+    .....     .+.....+.   . .+++...+..          
T Consensus       167 ~---~~~~p~g~-~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~~~V~viD~  238 (368)
T 1mda_H          167 C---FHIHPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVASSILQGDI  238 (368)
T ss_dssp             C---CCCEEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBSSCCEEEEC
T ss_pred             c---eEEccCCC-eEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcCCEEEEEEC
Confidence            1   11223333 3455666778777777765    11111     000001111   1 2222111100          


Q ss_pred             ----------------------eeccceeEEEEcCCCCEEEEEEC---------CCeEEEEECCCcceeEEEccCCCCCC
Q 001295          564 ----------------------FRKRSLGVVQFDTTKNRFLAAGD---------DFSIKFWDMDSVQLLTSIDADGGLPA  612 (1106)
Q Consensus       564 ----------------------~~~~~i~~~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~  612 (1106)
                                            ........+.++|++++++.+..         ++.+.++|+.+++.+..+....   .
T Consensus       239 ~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~---~  315 (368)
T 1mda_H          239 PAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH---D  315 (368)
T ss_dssp             CSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE---E
T ss_pred             CCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC---C
Confidence                                  00011122678999988887543         2456699999999988886543   3


Q ss_pred             cCeEEEccCCC-EEEEEe-CCCcEEEEEccCCchhhhhhc
Q 001295          613 SPRIRFNKDGC-LLAVST-NDNGIKILATSDGIRLLRTFE  650 (1106)
Q Consensus       613 v~~v~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~  650 (1106)
                      ...++|+|||+ ++++.. .++.|.++|+.++ +.++.+.
T Consensus       316 p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~-kvv~~I~  354 (368)
T 1mda_H          316 SDAIIAAQDGASDNYANSAGTEVLDIYDAASD-QDQSSVE  354 (368)
T ss_dssp             ECEEEECCSSSCEEEEEETTTTEEEEEESSSC-EEEEECC
T ss_pred             cceEEECCCCCEEEEEccCCCCeEEEEECCCC-cEEEEEE
Confidence            78899999998 455666 5899999999998 5555543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.03  E-value=5.5e-05  Score=89.14  Aligned_cols=198  Identities=7%  Similarity=0.006  Sum_probs=120.0

Q ss_pred             CCeeEEEEecCCCEEEEEe--CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEE
Q 001295          811 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS  888 (1106)
Q Consensus       811 ~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~  888 (1106)
                      ..+.+++|++.+..|..+.  .+.|+.++.........+...-.....+++...++++..+-+..+.|.+.++.... ..
T Consensus       349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~-~~  427 (619)
T 3s94_A          349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM-RK  427 (619)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CE
T ss_pred             CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe-EE
Confidence            4477899998777777665  58899999876444333333345677899987456666666677899999877543 23


Q ss_pred             Ee-cCcccCeeEEEEecCCCEEEEEcC--CCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE--e
Q 001295          889 KL-KGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--H  963 (1106)
Q Consensus       889 ~l-~~h~~~V~~l~~s~d~~~l~s~s~--Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~--~  963 (1106)
                      .+ ...-....+|++.|....|..+..  ...|...+++....  ..+.   ....   .....+++++++..|..+  .
T Consensus       428 ~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~--~~l~---~~~l---~~P~GlalD~~~~~LY~aD~~  499 (619)
T 3s94_A          428 ILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDR--VVLV---NTSL---GWPNGLALDYDEGKIYWGDAK  499 (619)
T ss_dssp             EEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC--EEEE---CSSC---SCEEEEEEETTTTEEEEEETT
T ss_pred             EEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCcc--EEEE---eCCC---CCCeeeEEcccCCEEEEEECC
Confidence            33 334456789999997555555543  35666666664321  1111   1111   245789999877766664  5


Q ss_pred             CCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCce
Q 001295          964 ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1020 (1106)
Q Consensus       964 d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~ 1020 (1106)
                      .+.|..+++..... +.+.. ........|++..+ .+.++-...+.|...|..+|.
T Consensus       500 ~~~I~~~~~dG~~~-~~~~~-~~l~~P~glav~~~-~ly~tD~~~~~I~~~~k~~g~  553 (619)
T 3s94_A          500 TDKIEVMNTDGTGR-RVLVE-DKIPHIFGFTLLGD-YVYWTDWQRRSIERVHKRSAE  553 (619)
T ss_dssp             TTEEEEEESSSCCC-EEEEE-CCCCSSCCEEEETT-EEEEECTTSSCEEEEESSSCC
T ss_pred             CCEEEEEecCCCce-EEEec-cCCCCcEEEEEECC-EEEEeecCCCeEEEEEcCCCc
Confidence            57899998865433 22211 11223345666433 333333345667777777763

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.02  E-value=8.5e-09  Score=113.14  Aligned_cols=177  Identities=14%  Similarity=0.153  Sum_probs=108.4

Q ss_pred             EEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEE
Q 001295          418 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF  497 (1106)
Q Consensus       418 l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  497 (1106)
                      ..+..+|. |..++.++.|..|| .+++.+..   ...+...+.++...+++.   +..++.+  |..+|. +++.+..+
T Consensus        25 ~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~---~~~~~~~~~~~~~~~~g~---l~v~t~~--l~~~d~-~g~~~~~~   93 (330)
T 3hxj_A           25 PILAKNGT-IYLGSSNKNLYAIN-TDGSVKWF---FKSGEIIECRPSIGKDGT---IYFGSDK--VYAINP-DGTEKWRF   93 (330)
T ss_dssp             CEECTTSC-EECSSTTTTTEEEC-TTSCEEES---SCGGGEEEECCEETTTTE---ECCSSCE--EEEECC-CGGGGGGS
T ss_pred             ceEccCCe-EEEEcCCCEEEEEC-CCCcEEEE---EecCCCcccceEEecCCc---EEEecCc--EEEECC-CCcEEEEE
Confidence            34444554 55566788899999 77775432   333444567788877775   4445544  888985 66655444


Q ss_pred             eccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCC
Q 001295          498 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT  577 (1106)
Q Consensus       498 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~  577 (1106)
                      ...........+.   + ..++.++.++.|..+|.. +............+.++...+++.                   
T Consensus        94 ~~~~~~~~~~~~~---~-~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-------------------  149 (330)
T 3hxj_A           94 DTKKAIVSDFTIF---E-DILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-------------------  149 (330)
T ss_dssp             CC-----CCEEEE---T-TEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-------------------
T ss_pred             ECCCCcccCceEE---C-CEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-------------------
Confidence            3322222222322   2 467788889999999987 555554444333333334433443                   


Q ss_pred             CCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEE
Q 001295          578 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA  638 (1106)
Q Consensus       578 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd  638 (1106)
                         +..++.++.|..||.. ++.+..+....  ..+.++.+.+++.+++..   +.+..+|
T Consensus       150 ---l~vgt~~~~l~~~d~~-g~~~~~~~~~~--~~~~~~~~d~~g~l~v~t---~~l~~~d  201 (330)
T 3hxj_A          150 ---IYVGSNDNYLYAINPD-GTEKWRFKTND--AITSAASIGKDGTIYFGS---DKVYAIN  201 (330)
T ss_dssp             ---EEEECTTSEEEEECTT-SCEEEEEECSS--CCCSCCEECTTCCEEEES---SSEEEEC
T ss_pred             ---EEEEcCCCEEEEECCC-CCEeEEEecCC--CceeeeEEcCCCEEEEEe---CEEEEEC
Confidence               6777888999999998 77776665432  356677777777755443   6777776

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.00  E-value=0.00018  Score=84.81  Aligned_cols=505  Identities=8%  Similarity=-0.054  Sum_probs=265.2

Q ss_pred             CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEE-
Q 001295          349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF-  427 (1106)
Q Consensus       349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-  427 (1106)
                      .-..+.+++|++.+..|+.+-..++.|..+++........                   +...-.....+++.+.+..| 
T Consensus        35 ~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v-------------------~~~g~~~P~GlAvD~~~~~LY   95 (628)
T 4a0p_A           35 GVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHV-------------------VEFGLDYPEGMAVDWLGKNLY   95 (628)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE-------------------ECSSCSCCCEEEEETTTTEEE
T ss_pred             CCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEE-------------------EeCCCCCcceEEEEeCCCEEE
Confidence            3457889999998877777777788999999875433211                   11112356789998765555 


Q ss_pred             EEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEe-cCCCcEEEEeCCCCceeEEEeccCCCeEE
Q 001295          428 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC-GDDKTIKVWDATNGAKQYIFEGHEAPVYS  506 (1106)
Q Consensus       428 as~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~h~~~v~~  506 (1106)
                      ++-...+.|.+.++++..... +  +...-.....|++.|.... ++++- +..+.|...++.... ...+.........
T Consensus        96 ~tD~~~~~I~v~~~dG~~~~~-l--~~~~l~~P~~iavdp~~G~-lY~tD~g~~~~I~r~~~dG~~-~~~l~~~~~~P~G  170 (628)
T 4a0p_A           96 WADTGTNRIEVSKLDGQHRQV-L--VWKDLDSPRALALDPAEGF-MYWTEWGGKPKIDRAAMDGSE-RTTLVPNVGRANG  170 (628)
T ss_dssp             EEETTTTEEEEEETTSTTCEE-E--ECSSCCCEEEEEEETTTTE-EEEEECSSSCEEEEEETTSCS-CEEEECSCSSEEE
T ss_pred             EEECCCCEEEEEecCCCcEEE-E--EeCCCCCcccEEEccCCCe-EEEeCCCCCCEEEEEeCCCCc-eEEEECCCCCcce
Confidence            444556889999987654221 1  2233345789999986664 33443 446778888865443 3333334456778


Q ss_pred             EeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEEC
Q 001295          507 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD  586 (1106)
Q Consensus       507 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  586 (1106)
                      +++.+.. +.+.++-...+.|...|++.... ..+.........+++.                     . +..+++-..
T Consensus       171 lalD~~~-~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~---------------------~-~~ly~tD~~  226 (628)
T 4a0p_A          171 LTIDYAK-RRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQY---------------------Q-DYIYWTDWS  226 (628)
T ss_dssp             EEEETTT-TEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEE---------------------T-TEEEEEETT
T ss_pred             EEEcccc-CEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEE---------------------C-CEEEEecCC
Confidence            8876543 35555656678899888865333 2222111222233332                     2 223334445


Q ss_pred             CCeEEEEECCCcceeEEEccCCCCCCcCeEE-EccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCC
Q 001295          587 DFSIKFWDMDSVQLLTSIDADGGLPASPRIR-FNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKP  665 (1106)
Q Consensus       587 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~-~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  665 (1106)
                      .+.|...|..+++....+....  .....+. +++..+.   +            .. .+... .+. ..       .+ 
T Consensus       227 ~~~I~~~dk~tg~~~~~l~~~~--~~p~~i~v~~~~~q~---~------------~n-~C~~~-ng~-C~-------~~-  278 (628)
T 4a0p_A          227 RRSIERANKTSGQNRTIIQGHL--DYVMDILVFHSSRQS---G------------WN-ECASS-NGH-CS-------HL-  278 (628)
T ss_dssp             TTEEEEEETTTCCSCEEEECSC--CSCCEEEEECGGGSC---C------------CC-TTTTT-GGG-CS-------SE-
T ss_pred             CCEEEEEECCCCCceEEEecCC--CCcceeeeeeecccc---c------------ce-EeccC-CCC-cc-------hh-
Confidence            7888888887777666554321  1222332 2221110   0            00 11000 000 00       00 


Q ss_pred             CcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccc
Q 001295          666 TISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK  745 (1106)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~  745 (1106)
                      ++..                                  +.+.+. ..+..|.    .+..                  ..
T Consensus       279 C~~~----------------------------------~~~~~~-C~C~~g~----~l~~------------------d~  301 (628)
T 4a0p_A          279 CLAV----------------------------------PVGGFV-CGCPAHY----SLNA------------------DN  301 (628)
T ss_dssp             EEEE----------------------------------TTTEEE-EECSTTC----EECT------------------TS
T ss_pred             hhcC----------------------------------CCCCee-EEcCCCc----Eecc------------------cC
Confidence            0000                                  000000 0000010    0000                  00


Q ss_pred             eEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEE
Q 001295          746 ISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYV  825 (1106)
Q Consensus       746 i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l  825 (1106)
                      .++.  .+ ..+++.+. ...|+-..+....                   ... ....+.   .-..+..++|++.+..|
T Consensus       302 ~~C~--~~-~~~Ll~s~-~~~i~~i~l~~~~-------------------~~~-~~l~~~---~~~~~~~ld~d~~~~~i  354 (628)
T 4a0p_A          302 RTCS--AP-TTFLLFSQ-KSAINRMVIDEQQ-------------------SPD-IILPIH---SLRNVRAIDYDPLDKQL  354 (628)
T ss_dssp             SCEE--CC-SSEEEEEE-TTEEEEECCCTTC-------------------CCC-EECCCT---TCSCEEEEEEETTTTEE
T ss_pred             CcCc--cc-cceeeeec-cceEEEEeccccc-------------------Cce-EEEEeh---hcCCceEEEEecCCCeE
Confidence            0011  01 22233332 2333322221100                   000 000011   23457889999988888


Q ss_pred             EEEe--CCeEEEEEcCCCceeeeecC------CCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEe-cCcccC
Q 001295          826 MSAS--GGKISLFNMMTFKTMATFMP------PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-KGHSKR  896 (1106)
Q Consensus       826 ~~~s--dg~i~vwd~~~~~~~~~~~~------~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l-~~h~~~  896 (1106)
                      ..+.  .+.|+.++.........+..      ....+..+++....+++..+-+..+.|.+.++. |+....+ ......
T Consensus       355 y~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~  433 (628)
T 4a0p_A          355 YWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDR  433 (628)
T ss_dssp             EEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCC
T ss_pred             EEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCc
Confidence            7776  57898888765433233322      234688999998445566676778899999876 4444443 334567


Q ss_pred             eeEEEEecCCCEEEEEcC-CC--cEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE--eCCeEEEEe
Q 001295          897 ITGLAFSHALNVLVSSGA-DS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFE  971 (1106)
Q Consensus       897 V~~l~~s~d~~~l~s~s~-Dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~--~d~~v~i~d  971 (1106)
                      ..+|++.|...+|..... ..  .|...+++....  ..+..  .. .   .....+++++++..|..+  ..+.|..++
T Consensus       434 Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~--~~l~~--~~-l---~~P~gla~D~~~~~LYw~D~~~~~I~~~~  505 (628)
T 4a0p_A          434 PRAVVVNPEKGYMYFTNLQERSPKIERAALDGTER--EVLFF--SG-L---SKPIALALDSRLGKLFWADSDLRRIESSD  505 (628)
T ss_dssp             EEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSC--EEEEC--SS-C---SCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             eeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCc--EEEEe--cc-C---CCccEEEEeCCCCEEEEEeCCCCEEEEEe
Confidence            899999995444444332 22  455556654221  11111  11 1   245889999987777664  457899999


Q ss_pred             cCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEee
Q 001295          972 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1025 (1106)
Q Consensus       972 ~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~ 1025 (1106)
                      +.... .+.+.. ........|++.. +...++-...+.|...|-.+|+....+
T Consensus       506 ~dG~~-r~~~~~-~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~i  556 (628)
T 4a0p_A          506 LSGAN-RIVLED-SNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTKV  556 (628)
T ss_dssp             TTSCS-CEEEEC-SSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEEE
T ss_pred             CCCCc-eEEEEc-CCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEEE
Confidence            86443 333321 2244567888754 444555555678888888777654443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.94  E-value=4.4e-08  Score=107.40  Aligned_cols=218  Identities=13%  Similarity=0.104  Sum_probs=133.4

Q ss_pred             EEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeCCC
Q 001295          355 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH  434 (1106)
Q Consensus       355 ~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~  434 (1106)
                      +..+..+|.  +..|+.++.|..|| .+++.+..                   ...+...+.++...++|.+++ ++.+ 
T Consensus        24 ~~~~d~~g~--l~v~t~~~~l~~~d-~~g~~~~~-------------------~~~~~~~~~~~~~~~~g~l~v-~t~~-   79 (330)
T 3hxj_A           24 SPILAKNGT--IYLGSSNKNLYAIN-TDGSVKWF-------------------FKSGEIIECRPSIGKDGTIYF-GSDK-   79 (330)
T ss_dssp             CCEECTTSC--EECSSTTTTTEEEC-TTSCEEES-------------------SCGGGEEEECCEETTTTEECC-SSCE-
T ss_pred             CceEccCCe--EEEEcCCCEEEEEC-CCCcEEEE-------------------EecCCCcccceEEecCCcEEE-ecCc-
Confidence            344556776  55667788999999 88876542                   111233456777777776444 4444 


Q ss_pred             eEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCC
Q 001295          435 IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKEN  514 (1106)
Q Consensus       435 ~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~  514 (1106)
                       |..+|. +++.+..   +...........+. ++   .+..++.++.|..+|.. ++.......+...+.++..  ..+
T Consensus        80 -l~~~d~-~g~~~~~---~~~~~~~~~~~~~~-~~---~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~--~~~  147 (330)
T 3hxj_A           80 -VYAINP-DGTEKWR---FDTKKAIVSDFTIF-ED---ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIV--SED  147 (330)
T ss_dssp             -EEEECC-CGGGGGG---SCC-----CCEEEE-TT---EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE--CTT
T ss_pred             -EEEECC-CCcEEEE---EECCCCcccCceEE-CC---EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEE--cCC
Confidence             888886 5554332   22222223334443 44   46777888999999988 8877776655555555553  334


Q ss_pred             ceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEE
Q 001295          515 IQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWD  594 (1106)
Q Consensus       515 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd  594 (1106)
                      + .++.++.++.|..+|.. +.....+......+.++...+++                     . +..++  +.|..||
T Consensus       148 g-~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g---------------------~-l~v~t--~~l~~~d  201 (330)
T 3hxj_A          148 G-TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDG---------------------T-IYFGS--DKVYAIN  201 (330)
T ss_dssp             S-CEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTC---------------------C-EEEES--SSEEEEC
T ss_pred             C-EEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCC---------------------E-EEEEe--CEEEEEC
Confidence            3 47778888999999987 55555554443334444443444                     3 44455  7889999


Q ss_pred             CCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEE
Q 001295          595 MDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA  638 (1106)
Q Consensus       595 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd  638 (1106)
                       .+++.+.......  ..+.++...++|.+. +++.++.+..++
T Consensus       202 -~~g~~~~~~~~~~--~~~~~~~~~~~g~l~-v~t~~~gl~~~~  241 (330)
T 3hxj_A          202 -PDGTEKWNFYAGY--WTVTRPAISEDGTIY-VTSLDGHLYAIN  241 (330)
T ss_dssp             -TTSCEEEEECCSS--CCCSCCEECTTSCEE-EEETTTEEEEEC
T ss_pred             -CCCcEEEEEccCC--cceeceEECCCCeEE-EEcCCCeEEEEC
Confidence             6777766665432  357788888877544 455666776665

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.92  E-value=3.2e-07  Score=102.56  Aligned_cols=235  Identities=10%  Similarity=0.028  Sum_probs=146.4

Q ss_pred             CCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCe---
Q 001295          822 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI---  897 (1106)
Q Consensus       822 ~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V---  897 (1106)
                      +..+++++ ++.|..+|..+++.+..............+.  ++ .+++++.++.|+.+|..+|+.+..........   
T Consensus       103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~-~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~  179 (376)
T 3q7m_A          103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DG-LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR  179 (376)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TT-EEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CC-EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence            44555555 8999999999999887665443322223333  33 67778889999999999998887665432211   


Q ss_pred             --eEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCC--CCCceEEEcCCCcEEEEEeCCeEEEEecC
Q 001295          898 --TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA--QSDTRVQFHQDQIHFLVVHETQLAIFETT  973 (1106)
Q Consensus       898 --~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~s~dg~~l~~~~d~~v~i~d~~  973 (1106)
                        ......  +..++.++.++.|..+|..+++...........+.....  ..+.....-.++..++.+.++.+..+|..
T Consensus       180 ~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~  257 (376)
T 3q7m_A          180 GESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLR  257 (376)
T ss_dssp             CCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETT
T ss_pred             CCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECC
Confidence              222232  456777888999999999987654322221111100000  00111111124555555678999999999


Q ss_pred             CceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCC
Q 001295          974 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN 1053 (1106)
Q Consensus       974 ~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~ 1053 (1106)
                      +++.+-...    ......+..  ++..|+.++.++.|..+|..+|+.+-.....   ...   . ..  .....   +.
T Consensus       258 tG~~~w~~~----~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~---~~~---~-~~--~~~~~---~~  319 (376)
T 3q7m_A          258 SGQIMWKRE----LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDL---LHR---L-LT--SPVLY---NG  319 (376)
T ss_dssp             TCCEEEEEC----CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTT---TTS---C-CC--CCEEE---TT
T ss_pred             CCcEEeecc----CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeeccc---CCC---c-cc--CCEEE---CC
Confidence            998875543    223444444  4667888888999999999999987665411   111   0 11  11122   46


Q ss_pred             EEEEEeCCCcEEEEeecCCCCccCCC
Q 001295         1054 EFALGLSDGGVHVFEPLESEGKWGVP 1079 (1106)
Q Consensus      1054 ~l~t~~~Dg~v~vW~~~~~~~~~~~~ 1079 (1106)
                      .|+.++.+|.|+++|..+++..|...
T Consensus       320 ~l~v~~~~g~l~~~d~~tG~~~~~~~  345 (376)
T 3q7m_A          320 NLVVGDSEGYLHWINVEDGRFVAQQK  345 (376)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEEe
Confidence            88889999999999999999666543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.90  E-value=2.7e-07  Score=104.19  Aligned_cols=329  Identities=12%  Similarity=0.082  Sum_probs=190.9

Q ss_pred             eEEEEecCCCcEEEEeCCCCceeEEEec---------------------------------cCC-Ce-----EEEeccc-
Q 001295          472 LCVITCGDDKTIKVWDATNGAKQYIFEG---------------------------------HEA-PV-----YSVCPHH-  511 (1106)
Q Consensus       472 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~---------------------------------h~~-~v-----~~~~~~~-  511 (1106)
                      ..|.|||..|.++|+-+.+++.++.+.-                                 +.. .+     .....+. 
T Consensus        16 ~~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t   95 (595)
T 1fwx_A           16 YGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFT   95 (595)
T ss_dssp             EEEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEE
T ss_pred             EEEeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCC
Confidence            3688999999999999999888876641                                 000 11     1112111 


Q ss_pred             --cCCceEEEEEec-CCeEEEEeCCCCCceeEeeCC-CCeeEEEEE-e-cCCCeEEEeeeccceeEEEEcCCCCEEEEE-
Q 001295          512 --KENIQFIFSTAL-DGKIKAWLYDNLGSRVDYEAP-GRWCTTMAY-S-ADGTRTYQGFRKRSLGVVQFDTTKNRFLAA-  584 (1106)
Q Consensus       512 --~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~-s-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-  584 (1106)
                        ..||++++.+.. ++.|.+.|+++.+....+... ......+++ + |++++++.+.+..    +=+.++|..|... 
T Consensus        96 ~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~----~p~~~dg~~l~~~~  171 (595)
T 1fwx_A           96 EGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDE----TPLVNDGTNMEDVA  171 (595)
T ss_dssp             TTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSC----EESSCSSSSTTCGG
T ss_pred             CCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccc----cccCCCCccccccc
Confidence              235666666655 567999999988776644443 244666666 3 6666443332110    0112233222221 


Q ss_pred             ECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCC
Q 001295          585 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK  664 (1106)
Q Consensus       585 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  664 (1106)
                      -.++.+.++|..+.+.+..+...+.   ...++++|+|+++++.+.+..-       + ..+.....             
T Consensus       172 ~~~~~vtvID~~t~~v~~qI~Vgg~---pd~~~~spdGk~~~vt~~~se~-------~-~~i~~~~~-------------  227 (595)
T 1fwx_A          172 NYVNVFTAVDADKWEVAWQVLVSGN---LDNCDADYEGKWAFSTSYNSEK-------G-MTLPEMTA-------------  227 (595)
T ss_dssp             GEEEEEEEEETTTTEEEEEEEESSC---CCCEEECSSSSEEEEEESCTTC-------C-SSHHHHTC-------------
T ss_pred             ccCceEEEEECCCCeEEEEEEeCCC---ccceEECCCCCEEEEEecCccc-------C-cchhhccc-------------
Confidence            2356899999999998888875433   3568999999999998875321       0 00000000             


Q ss_pred             CCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCcccccc
Q 001295          665 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT  744 (1106)
Q Consensus       665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~  744 (1106)
                                                                      ..-..+.+.+.....                 
T Consensus       228 ------------------------------------------------~~~d~v~V~~~~~~~-----------------  242 (595)
T 1fwx_A          228 ------------------------------------------------AEMDHIVVFNIAEIE-----------------  242 (595)
T ss_dssp             ------------------------------------------------CSEEEEEEEEHHHHH-----------------
T ss_pred             ------------------------------------------------cccceEEEeecccee-----------------
Confidence                                                            000112222211000                 


Q ss_pred             ceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCE
Q 001295          745 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY  824 (1106)
Q Consensus       745 ~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~  824 (1106)
                           .+.++|+....    +.+.+.|.....                    +......++   -.....++.++|||++
T Consensus       243 -----~~v~~Gk~~~i----~~V~VID~~~~~--------------------~~~~~~~Ip---vg~~PhGv~~sPDGk~  290 (595)
T 1fwx_A          243 -----KAIAAGDYQEL----NGVKVVDGRKEA--------------------SSLFTRYIP---IANNPHGCNMAPDKKH  290 (595)
T ss_dssp             -----HHHHHTCSEEE----TTEEEEECSGGG--------------------CCSSEEEEE---EESSCCCEEECTTSSE
T ss_pred             -----EeccCCCeeEE----CcEEEEeCcccC--------------------CceeEEEEe---cCCCceEEEEcCCCCE
Confidence                 01122222211    224444433210                    111000011   1234567999999999


Q ss_pred             EEEEe--CCeEEEEEcCCCc------------eeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeec-------
Q 001295          825 VMSAS--GGKISLFNMMTFK------------TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-------  883 (1106)
Q Consensus       825 l~~~s--dg~i~vwd~~~~~------------~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~-------  883 (1106)
                      +++++  +++|.++|+.+.+            ...... -......++|++ +|...++...|++|.+||+.+       
T Consensus       291 v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g  368 (595)
T 1fwx_A          291 LCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAG  368 (595)
T ss_dssp             EEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHT
T ss_pred             EEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECC-CCeEEEEEecCCcEEEEEhhHhhhhhcc
Confidence            99887  6899999998653            222332 234578999999 776667778899999999987       


Q ss_pred             ---ceEEEEecCcccCe-----eEEEEecCCCEEEEEcC---CCcE----------EEEeCCCcc
Q 001295          884 ---DEVKSKLKGHSKRI-----TGLAFSHALNVLVSSGA---DSQL----------CVWSSDGWE  927 (1106)
Q Consensus       884 ---~~~~~~l~~h~~~V-----~~l~~s~d~~~l~s~s~---Dg~i----------~vwd~~~~~  927 (1106)
                         .+.+.++..|..+-     .++.++|||++|+++..   |+.+          .++|+.+++
T Consensus       369 ~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          369 EKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             CSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred             cccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence               56777776664421     23456899999998753   5432          788986654

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.90  E-value=5.3e-08  Score=109.95  Aligned_cols=237  Identities=12%  Similarity=0.083  Sum_probs=160.4

Q ss_pred             cCCCEEEEEe--CCeEEEEEcCCCceeeeecCC-CCCeeEEEE-e-cCCCceEEEee------------------CCCcE
Q 001295          820 KNDSYVMSAS--GGKISLFNMMTFKTMATFMPP-PPAATFLAF-H-PQDNNIIAIGM------------------DDSSI  876 (1106)
Q Consensus       820 ~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~-~~~v~~l~~-s-~~d~~~la~g~------------------~dg~v  876 (1106)
                      +||+++.+..  ++.|.+.|+.+.++...+.-. ......+++ + | +++++++++                  .++.|
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v  177 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  177 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceE
Confidence            4899999887  577999999999988754322 345788888 4 8 777887774                  34589


Q ss_pred             EEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCC--------------------------------------cE
Q 001295          877 QIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS--------------------------------------QL  918 (1106)
Q Consensus       877 ~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg--------------------------------------~i  918 (1106)
                      .++|..+.+.+.++.--. .-..++++|||+++++.+.+.                                      .|
T Consensus       178 tvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V  256 (595)
T 1fwx_A          178 TAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV  256 (595)
T ss_dssp             EEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred             EEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence            999999998888776322 346788999999999888653                                      35


Q ss_pred             EEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE--eCCeEEEEecCCce------------EeeecccC
Q 001295          919 CVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLE------------CVKQWVPR  984 (1106)
Q Consensus       919 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~--~d~~v~i~d~~~~~------------~~~~~~~~  984 (1106)
                      .|.|..+.+... ....+..+     ....++.++|||++++++  .+.+|.++|+.+.+            .+..... 
T Consensus       257 ~VID~~~~~~~~-~~~~Ipvg-----~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v-  329 (595)
T 1fwx_A          257 KVVDGRKEASSL-FTRYIPIA-----NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL-  329 (595)
T ss_dssp             EEEECSGGGCCS-SEEEEEEE-----SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC-
T ss_pred             EEEeCcccCCce-eEEEEecC-----CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC-
Confidence            555655421000 00111112     245889999999999985  56789999999763            3333332 


Q ss_pred             CCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCC----------ceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCE
Q 001295          985 ESSAPITHATFSCDSQLVYACFLDATVCVFSAAN----------LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNE 1054 (1106)
Q Consensus       985 ~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~ 1054 (1106)
                        ......++|+|||...++...|+.|.+||+++          ...+.++..+ +.| ||.   -....+..+| ||++
T Consensus       330 --G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~-yqp-Gh~---~~~~g~t~~~-DGk~  401 (595)
T 1fwx_A          330 --GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH-YQP-GHL---KTVMGETLDA-TNDW  401 (595)
T ss_dssp             --CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS-SCE-EEE---EETTTTSTTC-CSSE
T ss_pred             --CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecc-ccc-ccc---eeccceEeCC-CCCE
Confidence              45789999999994345566799999999987          4556666532 222 110   0111234567 7899


Q ss_pred             EEEEeC---CCc----------EEEEeecCCC
Q 001295         1055 FALGLS---DGG----------VHVFEPLESE 1073 (1106)
Q Consensus      1055 l~t~~~---Dg~----------v~vW~~~~~~ 1073 (1106)
                      |+++..   |+-          -.+.|++.++
T Consensus       402 l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          402 LVCLSKFSKDRFLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             EEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred             EEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence            888763   332          1789997666

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.89  E-value=6.3e-10  Score=123.53  Aligned_cols=190  Identities=14%  Similarity=0.127  Sum_probs=107.7

Q ss_pred             CCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCC
Q 001295          863 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTP  942 (1106)
Q Consensus       863 d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~  942 (1106)
                      ++..+++++.||.|+.||..+|+.+.++..  +.+.+..+..++..+++++.|+.|+.||..+++.............  
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~--   83 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV--   83 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHH--
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccc--
Confidence            456888899999999999999999988876  5666666777888888889999999999988765321111100000  


Q ss_pred             CCCCCceEEEcCCCcEEEEEeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeE
Q 001295          943 TAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR 1022 (1106)
Q Consensus       943 ~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~ 1022 (1106)
                          ....++..++..++.+.++.++.||..+|+.+..+..  +.    ...++|++..|++++.|+.|+.||..+|+.+
T Consensus        84 ----~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~--~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~  153 (369)
T 2hz6_A           84 ----QASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSS--AF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELR  153 (369)
T ss_dssp             ----TTCSCC-----CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSSSCC
T ss_pred             ----ccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecC--CC----cccccccCCEEEEEecCCEEEEEECCCCCEE
Confidence                0011112344433336789999999999998766542  22    2456778899999999999999999999877


Q ss_pred             EeeCCCcccCCCCCCCCccceEEEEeCCC---CCEEEEEeCCCcEEEEeecCCCCccCCC
Q 001295         1023 CRINPSAYLPAGVSSSNVHPLVIAAHPQE---PNEFALGLSDGGVHVFEPLESEGKWGVP 1079 (1106)
Q Consensus      1023 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~d---~~~l~t~~~Dg~v~vW~~~~~~~~~~~~ 1079 (1106)
                      ..+....+          .  ..++.. +   ...+++++.||.|+.||..+++..|...
T Consensus       154 W~~~~~~~----------~--~~~~~~-~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  200 (369)
T 2hz6_A          154 WNATYFDY----------A--ASLPED-DVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN  200 (369)
T ss_dssp             CEEEEEEE----------C--CBCCCC-CTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred             EeEecccc----------c--CccccC-CccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence            65541111          0  111221 1   1567778899999999999999777653

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.89  E-value=4.7e-10  Score=124.55  Aligned_cols=186  Identities=12%  Similarity=0.022  Sum_probs=110.9

Q ss_pred             CCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccC-ee
Q 001295          821 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR-IT  898 (1106)
Q Consensus       821 ~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~-V~  898 (1106)
                      ++..+++++ ||.|+.||..+++.+..+..  ..+.+..+.. ++.++++++.||.|+.||..+|+.+..+..+... +.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~   84 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ   84 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence            566777777 89999999999999888876  4565655666 6778888889999999999999887776554321 11


Q ss_pred             -EEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEecCCce
Q 001295          899 -GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLE  976 (1106)
Q Consensus       899 -~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d~~~~~  976 (1106)
                       +..+. ++..|++++.|+.|+.||..+++.....     ..+       ....++|++..+++ +.++.|+.||.++++
T Consensus        85 ~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~-----~~~-------~~~~~~p~~~~v~~~~~dg~v~a~d~~tG~  151 (369)
T 2hz6_A           85 ASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTL-----SSA-------FADSLSPSTSLLYLGRTEYTITMYDTKTRE  151 (369)
T ss_dssp             TCSCC------CCCCEEEEEEEEECCC----------------------------------EEEEEEEEEEECCCSSSSS
T ss_pred             cCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEe-----cCC-------CcccccccCCEEEEEecCCEEEEEECCCCC
Confidence             11111 3457788888999999999998753211     111       12345667777776 578999999999998


Q ss_pred             EeeecccCCCCCCeeEEEECCCC---CEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295          977 CVKQWVPRESSAPITHATFSCDS---QLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus       977 ~~~~~~~~~h~~~v~~l~~s~d~---~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
                      .+-.+....    ....+++.+.   ..+++++.||.|+.||..+|+.+-+..
T Consensus       152 ~~W~~~~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  200 (369)
T 2hz6_A          152 LRWNATYFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN  200 (369)
T ss_dssp             CCCEEEEEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred             EEEeEeccc----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence            765543211    2233344432   567778899999999999999876654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.77  E-value=4.6e-06  Score=99.93  Aligned_cols=167  Identities=14%  Similarity=0.139  Sum_probs=111.9

Q ss_pred             EEEEecCCCceEEEeeCCCc-------------------EEEEEeecceEEEEecC--cc-------cCeeEEEEecCCC
Q 001295          856 FLAFHPQDNNIIAIGMDDSS-------------------IQIYNVRVDEVKSKLKG--HS-------KRITGLAFSHALN  907 (1106)
Q Consensus       856 ~l~~s~~d~~~la~g~~dg~-------------------v~iwd~~~~~~~~~l~~--h~-------~~V~~l~~s~d~~  907 (1106)
                      .+++++ +..+++.++.++.                   |.-+|..+|+.+-.++.  |.       .+.....+..+|+
T Consensus       234 ~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~  312 (668)
T 1kv9_A          234 SMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGK  312 (668)
T ss_dssp             CEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred             ceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCc
Confidence            478888 6678888877763                   99999999998877654  32       2222233344775


Q ss_pred             ---EEEEEcCCCcEEEEeCCCcccccceeecc---------cCCCC--------C-----------CCCCCceEEEcCCC
Q 001295          908 ---VLVSSGADSQLCVWSSDGWEKQKNRFLQI---------PTGRT--------P-----------TAQSDTRVQFHQDQ  956 (1106)
Q Consensus       908 ---~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~---------~~~~~--------~-----------~~~~i~~~~~s~dg  956 (1106)
                         .|+.++.+|.+.++|..+++.........         ..+..        .           ....-..++++|+.
T Consensus       313 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~  392 (668)
T 1kv9_A          313 PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT  392 (668)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred             EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCC
Confidence               68899999999999999987642111000         00000        0           00011237888887


Q ss_pred             cEEEE-E------------------------------------eCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCC
Q 001295          957 IHFLV-V------------------------------------HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDS  999 (1106)
Q Consensus       957 ~~l~~-~------------------------------------~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~  999 (1106)
                      ..+.+ .                                    .++.|..||+.+++.+-....   ..++....+...+
T Consensus       393 g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~~~~~t~g  469 (668)
T 1kv9_A          393 GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY---PTHWNGGTLSTAG  469 (668)
T ss_dssp             TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE---SSSCCCCEEEETT
T ss_pred             CEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC---CCCCcCceeEeCC
Confidence            66654 1                                    127799999999998766543   2233333445578


Q ss_pred             CEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295         1000 QLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus      1000 ~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
                      .++++++.|+.|++||..+|+.+.++.
T Consensus       470 g~vf~g~~dg~l~a~d~~tG~~l~~~~  496 (668)
T 1kv9_A          470 NLVFQGTAAGQMHAYSADKGEALWQFE  496 (668)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CEEEEECCcccchhhhhhcChhheEec
Confidence            889999999999999999999998887

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.76  E-value=7.7e-07  Score=91.20  Aligned_cols=216  Identities=11%  Similarity=0.024  Sum_probs=144.9

Q ss_pred             ceeeeecCCCC--CeeEEEEecCCCceEEEeeC--CCcEEEEEeecceEEEEecCccc-CeeEEEEecCCCEE-EEEcCC
Q 001295          842 KTMATFMPPPP--AATFLAFHPQDNNIIAIGMD--DSSIQIYNVRVDEVKSKLKGHSK-RITGLAFSHALNVL-VSSGAD  915 (1106)
Q Consensus       842 ~~~~~~~~~~~--~v~~l~~s~~d~~~la~g~~--dg~v~iwd~~~~~~~~~l~~h~~-~V~~l~~s~d~~~l-~s~s~D  915 (1106)
                      +.+.++. |..  ....++|++ ++.++++.+.  ++.|+++|+.+++.+..+.-... ....+++.  ++.| ++.-.+
T Consensus        10 ~vv~~~p-~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~   85 (266)
T 2iwa_A           10 EVLNEFP-HDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLK   85 (266)
T ss_dssp             EEEEEEE-CCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred             eEEEEEE-CCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence            4455554 433  357999999 6766655443  57999999999999888653221 22345554  4444 455567


Q ss_pred             CcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeEEEEecCCceEeeecccCCCCC---Cee
Q 001295          916 SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSA---PIT  991 (1106)
Q Consensus       916 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v~i~d~~~~~~~~~~~~~~h~~---~v~  991 (1106)
                      +.+.++|..+.+.....    ..+ .     .....+++||+.++++ .++.|.++|.++.+.+..+....+..   .+.
T Consensus        86 ~~v~viD~~t~~v~~~i----~~g-~-----~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~n  155 (266)
T 2iwa_A           86 NIGFIYDRRTLSNIKNF----THQ-M-----KDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLN  155 (266)
T ss_dssp             SEEEEEETTTTEEEEEE----ECC-S-----SSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred             CEEEEEECCCCcEEEEE----ECC-C-----CCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccce
Confidence            89999999986653321    111 1     1234567788877775 56799999999999888877543322   366


Q ss_pred             EEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccC----CCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEE
Q 001295          992 HATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLP----AGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1067 (1106)
Q Consensus       992 ~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW 1067 (1106)
                      .+.|. +|+..+....++.|.+.|..+++.+..+......+    ..+ .....+..++|+|+...+++++...+.|++-
T Consensus       156 ele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~-~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i  233 (266)
T 2iwa_A          156 ELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGF-RDIDVLNGIAWDQENKRIFVTGKLWPKLFEI  233 (266)
T ss_dssp             EEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTC-TTCCCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred             eEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccc-cccCceEEEEEcCCCCEEEEECCCCCeEEEE
Confidence            88888 77555555467899999999999999987432110    010 1113445899999545577888888999999


Q ss_pred             eecCCC
Q 001295         1068 EPLESE 1073 (1106)
Q Consensus      1068 ~~~~~~ 1073 (1106)
                      ++...+
T Consensus       234 ~l~~~~  239 (266)
T 2iwa_A          234 KLHLVR  239 (266)
T ss_dssp             EEEECC
T ss_pred             EEeccc
Confidence            987754

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.76  E-value=8.6e-07  Score=90.85  Aligned_cols=200  Identities=10%  Similarity=0.042  Sum_probs=138.9

Q ss_pred             CeeEEEEecCCCEEEEEe---CCeEEEEEcCCCceeeeecCCCC-CeeEEEEecCCCceEEEeeCCCcEEEEEeecceEE
Q 001295          812 AVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPP-AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK  887 (1106)
Q Consensus       812 ~v~~l~~s~~~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~-~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~  887 (1106)
                      ....++|++++.+.++.+   ++.|+++|+.+++.+..+..... ....+++.  ++++.++...++.+.++|..+++.+
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~   99 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI   99 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence            467899999875555543   47899999999999888653222 23345555  4566666677899999999999999


Q ss_pred             EEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCe
Q 001295          888 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQ  966 (1106)
Q Consensus       888 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~  966 (1106)
                      .++..-..  ....+++||+.|+.+..+++|.++|..+.+.......... +..  ...+..+.|. +|+..+.. .++.
T Consensus       100 ~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~-~~p--~~~~nele~~-dg~lyvn~~~~~~  173 (266)
T 2iwa_A          100 KNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN-GHR--VIRLNELEYI-NGEVWANIWQTDC  173 (266)
T ss_dssp             EEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEET-TEE--CCCEEEEEEE-TTEEEEEETTSSE
T ss_pred             EEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC-Ccc--cccceeEEEE-CCEEEEecCCCCe
Confidence            88853311  2344667888777777889999999988665433222111 110  0124567777 77655554 5789


Q ss_pred             EEEEecCCceEeeecccCC---------C--CCCeeEEEECCCCCEE-EEEEcCCeEEEEEcCCc
Q 001295          967 LAIFETTKLECVKQWVPRE---------S--SAPITHATFSCDSQLV-YACFLDATVCVFSAANL 1019 (1106)
Q Consensus       967 v~i~d~~~~~~~~~~~~~~---------h--~~~v~~l~~s~d~~~l-~t~s~Dg~i~vwd~~~~ 1019 (1106)
                      |.+.|..+++.+..+...+         +  ......|+|+|+++.| +++....+|++.++...
T Consensus       174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            9999999999988876431         0  1356899999998765 55557788998887654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.76  E-value=3.9e-06  Score=100.64  Aligned_cols=81  Identities=15%  Similarity=0.142  Sum_probs=55.0

Q ss_pred             CCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEE
Q 001295          873 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF  952 (1106)
Q Consensus       873 dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  952 (1106)
                      +|.|..||+.+++.+-+...+. .+....+...+.+++.++.|+.|+.||.++++......  ...+.     .-.-+.+
T Consensus       437 ~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~--~~~~~-----~~~p~~~  508 (668)
T 1kv9_A          437 SGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFE--AQSGI-----VAAPMTF  508 (668)
T ss_dssp             EEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE--CSSCC-----CSCCEEE
T ss_pred             cceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEec--CCCCc-----ccCceEE
Confidence            4889999999999887765433 34444556678899999999999999999987543222  12211     1134566


Q ss_pred             cCCCcEEEE
Q 001295          953 HQDQIHFLV  961 (1106)
Q Consensus       953 s~dg~~l~~  961 (1106)
                      ..+|+..++
T Consensus       509 ~~~G~~yva  517 (668)
T 1kv9_A          509 ELAGRQYVA  517 (668)
T ss_dssp             EETTEEEEE
T ss_pred             EECCEEEEE
Confidence            678875444

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.73  E-value=0.00082  Score=84.67  Aligned_cols=224  Identities=8%  Similarity=0.023  Sum_probs=125.9

Q ss_pred             EEEEEeCCeEEEEEcCCCce--eeeecCCCCCeeEEEEecCCCceEEEeeCC----------------------------
Q 001295          824 YVMSASGGKISLFNMMTFKT--MATFMPPPPAATFLAFHPQDNNIIAIGMDD----------------------------  873 (1106)
Q Consensus       824 ~l~~~sdg~i~vwd~~~~~~--~~~~~~~~~~v~~l~~s~~d~~~la~g~~d----------------------------  873 (1106)
                      -++..+++.++|..+.+...  ++++. -...+..++++| ..+.++++..+                            
T Consensus       708 g~v~~~~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  785 (1158)
T 3ei3_A          708 SLALANNSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQE-VSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSS  785 (1158)
T ss_dssp             EEEEECSSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEG-GGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECC
T ss_pred             cEEEEcCCceEEEEecccCCeeEEEEe-CCCCceEEEEcC-CCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccc
Confidence            45555566788888754322  22232 234678888888 55544433211                            


Q ss_pred             ---------------------CcEEEEEeecceEEEEecC-cccCeeEEE---EecC-CCEEEEEc----------CCCc
Q 001295          874 ---------------------SSIQIYNVRVDEVKSKLKG-HSKRITGLA---FSHA-LNVLVSSG----------ADSQ  917 (1106)
Q Consensus       874 ---------------------g~v~iwd~~~~~~~~~l~~-h~~~V~~l~---~s~d-~~~l~s~s----------~Dg~  917 (1106)
                                           +.|++.|..+++.+..+.- ....+.+++   |..+ ..+|+.|.          ..|.
T Consensus       786 ~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gr  865 (1158)
T 3ei3_A          786 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGR  865 (1158)
T ss_dssp             CCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEE
T ss_pred             cccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceE
Confidence                                 2366667666666554432 123345544   3332 46888775          3478


Q ss_pred             EEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCceEeeecccCCCCCCeeEEEECC
Q 001295          918 LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSC  997 (1106)
Q Consensus       918 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~  997 (1106)
                      |.++++..++... ......+      +.+.+++-- +| +|+++-..++++|++...+.++ .....+. .|..+....
T Consensus       866 i~vf~v~~~kL~l-v~~~~v~------g~v~al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~-~~~~~~~-~i~~~~l~~  934 (1158)
T 3ei3_A          866 IVVFQYSDGKLQT-VAEKEVK------GAVYSMVEF-NG-KLLASINSTVRLYEWTTEKELR-TECNHYN-NIMALYLKT  934 (1158)
T ss_dssp             EEEEEEETTEEEE-EEEEEES------SCEEEEEEE-TT-EEEEEETTEEEEEEECTTSCEE-EEEEECC-CSCEEEEEE
T ss_pred             EEEEEEECCEEEE-EEEEEcC------CcCEEEeee-CC-EEEEEcCCEEEEEECCCCceEE-EEeeccc-cEEEEEEec
Confidence            9999997432211 1111111      345555432 34 6777778999999998665333 1111111 233333333


Q ss_pred             CCCEEEEEEcCCeEEEEEc--CCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecC
Q 001295          998 DSQLVYACFLDATVCVFSA--ANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1071 (1106)
Q Consensus       998 d~~~l~t~s~Dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~ 1071 (1106)
                      .+.+++.|..-..|.++.+  ..+++...-.  ++.+       .+..++.|..  ...++.+..+|+|.+.+...
T Consensus       935 ~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~--D~~~-------~~vta~~~ld--~~t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          935 KGDFILVGDLMRSVLLLAYKPMEGNFEEIAR--DFNP-------NWMSAVEILD--DDNFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             ETTEEEEEESSBCEEEEEEETTTTEEEEEEE--CCSC-------BCEEEEEEEE--TTEEEEEETTSEEEEEEECT
T ss_pred             cCCEEEEEEhhheEEEEEEEcCCCeEEEEEe--eccc-------ccEEEEEEEc--cCcEEEEcCCCcEEEEecCC
Confidence            5778888887777777554  4444432221  2222       3444788874  45888899999999998765

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.72  E-value=9.5e-06  Score=85.35  Aligned_cols=202  Identities=10%  Similarity=-0.016  Sum_probs=132.6

Q ss_pred             CeeEEEEecCCCEEEEEe--CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEE
Q 001295          812 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK  889 (1106)
Q Consensus       812 ~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~  889 (1106)
                      .+..+++++++..|..+.  ++.|..++..+......+.........++++++++.++++-...+.|.++++........
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~  116 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL  116 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE
Confidence            467899999887777776  689999999865543333333356889999984455555556678999999864332222


Q ss_pred             ecCcccCeeEEEEecCCCEEEEEcC---CCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE--eC
Q 001295          890 LKGHSKRITGLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE  964 (1106)
Q Consensus       890 l~~h~~~V~~l~~s~d~~~l~s~s~---Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~--~d  964 (1106)
                      ..........++++|++..|..+..   .+.|..++++....   ..+.. .+    ......+++++++..|.++  ..
T Consensus       117 ~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~---~~~~~-~~----~~~P~gia~d~~~~~lyv~d~~~  188 (267)
T 1npe_A          117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR---RILAQ-DN----LGLPNGLTFDAFSSQLCWVDAGT  188 (267)
T ss_dssp             ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC---EEEEC-TT----CSCEEEEEEETTTTEEEEEETTT
T ss_pred             EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc---EEEEE-CC----CCCCcEEEEcCCCCEEEEEECCC
Confidence            2222245689999997666655543   36788888765321   11111 11    1245789999988776664  56


Q ss_pred             CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEE-cCCeEEEEEcCCceeEEeeC
Q 001295          965 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus       965 ~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s-~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
                      +.|.++|..+........  . ......+++.  +..|+.+. ..+.|.++|..+++.+..+.
T Consensus       189 ~~I~~~~~~g~~~~~~~~--~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~  246 (267)
T 1npe_A          189 HRAECLNPAQPGRRKVLE--G-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (267)
T ss_dssp             TEEEEEETTEEEEEEEEE--C-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             CEEEEEecCCCceEEEec--C-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence            789999998654433332  2 2334667654  45555554 56899999999999988876

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=98.68  E-value=0.0026  Score=78.00  Aligned_cols=533  Identities=11%  Similarity=0.066  Sum_probs=273.0

Q ss_pred             CCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEE
Q 001295          350 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV  429 (1106)
Q Consensus       350 ~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las  429 (1106)
                      ...|.++....+|.  |-.|+.+| +..||..+.+...              +     .......|.++.. .+| .|..
T Consensus        62 ~~~i~~i~~d~~g~--lWigT~~G-l~~yd~~~~~f~~--------------~-----~~~~~~~i~~i~~-~~g-~lWi  117 (758)
T 3ott_A           62 NTRIYCGVIIDNTY--LYMGTDNG-ILVYNYRADRYEQ--------------P-----ETDFPTDVRTMAL-QGD-TLWL  117 (758)
T ss_dssp             SSCEEEEEEETTTE--EEEEETTE-EEEEETTTTEECC--------------C-----SCCCCSCEEEEEE-ETT-EEEE
T ss_pred             CceEEEEEEcCCCc--EEEEeCCC-eEEEeCCCCEEEC--------------c-----ccCCCceEEEEEe-cCC-cEEE
Confidence            45789988888886  44455554 7889987653211              0     0111235777765 355 4555


Q ss_pred             EeCCCeEEEEEccCCceeeeeeee-c-cccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEecc------C
Q 001295          430 AYSRHIVQIYSYHGGDEVRQHLEI-D-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH------E  501 (1106)
Q Consensus       430 ~~~d~~v~iwd~~~~~~~~~~~~l-~-~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h------~  501 (1106)
                      ++.+ -+..+|..+++... .... . -....|.++....+|.  +.+ |..+ -+..+|..+++.. .+...      .
T Consensus       118 gt~~-Gl~~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~--lWi-gt~~-Gl~~~~~~~~~~~-~~~~~~~~~~~~  190 (758)
T 3ott_A          118 GALN-GLYTYQLQSRKLTS-FDTRRNGLPNNTIYSIIRTKDNQ--IYV-GTYN-GLCRYIPSNGKFE-GIPLPVHSSQSN  190 (758)
T ss_dssp             EETT-EEEEEETTTCCEEE-ECHHHHCCSCSCEEEEEECTTCC--EEE-EETT-EEEEEETTTTEEE-EECCCCCTTCSS
T ss_pred             EcCC-cceeEeCCCCeEEE-eccCCCCcCCCeEEEEEEcCCCC--EEE-EeCC-CHhhCccCCCceE-EecCCCcccccc
Confidence            6666 48888987754321 1000 0 1134688888887887  444 3333 4778887766532 22111      1


Q ss_pred             CCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEE
Q 001295          502 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF  581 (1106)
Q Consensus       502 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l  581 (1106)
                      ..|.++..  +.++..|..|+. +-+..+|..+.... .+.       .             .....+.++....+|...
T Consensus       191 ~~i~~i~~--d~~~~~lWigt~-~Gl~~~~~~~~~~~-~~~-------~-------------l~~~~i~~i~~d~~g~lW  246 (758)
T 3ott_A          191 LFVNSLLE--DTTRQCVWIGTE-GYLFQYFPSTGQIK-QTE-------A-------------FHNNSIKSLALDGNGDLL  246 (758)
T ss_dssp             CCEEEEEE--ETTTTEEEEEEE-EEEEEEETTTTEEE-EEE-------E-------------EEEEEEEEEEECTTCCEE
T ss_pred             ceeEEEEE--ECCCCEEEEEEC-CCCeEEcCCCCeEE-ecc-------C-------------CCCCeEEEEEEcCCCCEE
Confidence            23777764  333344445553 45777776543211 110       0             001134555555555544


Q ss_pred             EEEECCCeEEEEECCCcceeEEEccCC-----CCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhccccccc
Q 001295          582 LAAGDDFSIKFWDMDSVQLLTSIDADG-----GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDA  656 (1106)
Q Consensus       582 ~~~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  656 (1106)
                       .|+. +-+.+++..+++.........     ....|.++....+|.+.+ |+..| +.++.. +.  ..+.+       
T Consensus       247 -igT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~~~-~~--~~~~~-------  312 (758)
T 3ott_A          247 -AGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG-ISLSRY-NS--ALQFI-------  312 (758)
T ss_dssp             -EEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS-EEEECC-CC---CEEE-------
T ss_pred             -EEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc-cccccc-CC--ceeEE-------
Confidence             4444 458888887665433221110     112466777777776554 44445 443321 11  00000       


Q ss_pred             ccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecc
Q 001295          657 SRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLR  736 (1106)
Q Consensus       657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~  736 (1106)
                                                                                       ....           
T Consensus       313 -----------------------------------------------------------------~~~~-----------  316 (758)
T 3ott_A          313 -----------------------------------------------------------------PISQ-----------  316 (758)
T ss_dssp             -----------------------------------------------------------------EHHH-----------
T ss_pred             -----------------------------------------------------------------eccc-----------
Confidence                                                                             0000           


Q ss_pred             cCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEE
Q 001295          737 LPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF  816 (1106)
Q Consensus       737 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l  816 (1106)
                      .........|.++....+|...+. +.+| +..++...+...         .+..+......       ..-....|.++
T Consensus       317 ~~~~~~~~~v~~i~~D~~g~lWiG-t~~G-l~~~~~~~~~~~---------~~~~~~~~~~~-------~~l~~~~v~~i  378 (758)
T 3ott_A          317 ITGTGDGNQFYSLFRDSKGFYWFG-GANG-LIRFTDPAGERH---------DAIWYRMGDKT-------YPLSHNRIRHI  378 (758)
T ss_dssp             HSCSCCCCBEEEEEECTTCCEEEE-ETTE-EEEESCTTSSCC---------CCEEECTTCSS-------SCCSCSCEEEE
T ss_pred             CCCCCCCceEEEEEEcCCCCEEEe-eCCc-ceeecccccccc---------eeEEeccCCcC-------CCCCCCceEEE
Confidence            000002245777877888875554 4555 444432211000         00001100000       00024568899


Q ss_pred             EEecCCCEEEEEeCCeEEEEEcCCCceeeee--cC----CCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecc------
Q 001295          817 ALSKNDSYVMSASGGKISLFNMMTFKTMATF--MP----PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD------  884 (1106)
Q Consensus       817 ~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~--~~----~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~------  884 (1106)
                      ....+|.+.+.. ++.|..||..+++...-.  ..    ....|.++.... ++++ -.|+..+-|.++|..+.      
T Consensus       379 ~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~l-WigT~~~Gl~~~~~~~~~~~~~~  455 (758)
T 3ott_A          379 YEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDT-AGQL-WISTCLGGIFVVDKHKLMQSTSG  455 (758)
T ss_dssp             EECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECT-TSEE-EEEESSSCEEEEEHHHHHHCCSS
T ss_pred             EECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcC-CCCE-EEEECCCceEEEccccccccCCc
Confidence            988888766544 678999998876543221  11    123578887766 5554 44666667888886531      


Q ss_pred             eEE--EEec---C-cccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcE
Q 001295          885 EVK--SKLK---G-HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH  958 (1106)
Q Consensus       885 ~~~--~~l~---~-h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~  958 (1106)
                      ...  ..+.   + ....|.++...++|.+.+.++..+-|..+|..+++..     ............+.++....+|.+
T Consensus       456 ~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~-----~~~~~~~~~~~~~~~i~~d~~g~l  530 (758)
T 3ott_A          456 QYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVT-----KLFADELTGEKSPNYLLCDEDGLL  530 (758)
T ss_dssp             EEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEE-----EECTTTSCGGGCEEEEEECTTSCE
T ss_pred             ceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceE-----EecCCCcCCCcccceEEECCCCCE
Confidence            111  1111   1 1235889999888887764443444888888764322     111111111134677888888887


Q ss_pred             EEEEeCCeEEEEecCCceEeeecccCC-CCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCC
Q 001295          959 FLVVHETQLAIFETTKLECVKQWVPRE-SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSS 1037 (1106)
Q Consensus       959 l~~~~d~~v~i~d~~~~~~~~~~~~~~-h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 1037 (1106)
                      .+.+ .+.+..||..+.+... +...+ ....|.++... +| .|..++..| |..+|..+.+... +.    ++..   
T Consensus       531 Wigt-~~Gl~~~~~~~~~~~~-~~~~gl~~~~i~~i~~~-~g-~lWi~t~~G-l~~~~~~~~~~~~-~~----~~~~---  597 (758)
T 3ott_A          531 WVGF-HGGVMRINPKDESQQS-ISFGSFSNNEILSMTCV-KN-SIWVSTTNG-LWIIDRKTMDARQ-QN----MTNK---  597 (758)
T ss_dssp             EEEE-TTEEEEECC--CCCCB-CCCCC---CCEEEEEEE-TT-EEEEEESSC-EEEEETTTCCEEE-C------CCC---
T ss_pred             EEEe-cCceEEEecCCCceEE-ecccCCCccceEEEEEC-CC-CEEEECCCC-eEEEcCCCceeEE-ec----CCCC---
Confidence            7665 4578899887665322 11111 13568888763 55 455555566 6678988776542 21    2221   


Q ss_pred             CCccceEEEEeCCCCCEEEEEeCCCcEEEEeecC
Q 001295         1038 SNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1071 (1106)
Q Consensus      1038 ~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~ 1071 (1106)
                       .+.  ...+...|| .|..|+.+|- ..++...
T Consensus       598 -~~~--~~~~~~~~G-~l~fG~~~Gl-~~f~p~~  626 (758)
T 3ott_A          598 -RFT--SLLFDPKED-CVYLGGADGF-GISHSNL  626 (758)
T ss_dssp             -CCS--EEEEETTTT-EEEEECBSEE-EEEEC--
T ss_pred             -cee--eeEEECCCC-cEEEecCCce-EEEChhh
Confidence             122  344444344 5666777774 5556543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.66  E-value=1.4e-05  Score=93.54  Aligned_cols=196  Identities=9%  Similarity=-0.086  Sum_probs=119.4

Q ss_pred             EEEEecCCCEEEEEe-C----------------CeEEEEEcCCCceeeeecCC--C-------CCeeEEEEecCCC---c
Q 001295          815 CFALSKNDSYVMSAS-G----------------GKISLFNMMTFKTMATFMPP--P-------PAATFLAFHPQDN---N  865 (1106)
Q Consensus       815 ~l~~s~~~~~l~~~s-d----------------g~i~vwd~~~~~~~~~~~~~--~-------~~v~~l~~s~~d~---~  865 (1106)
                      .++++++...+..+. +                +.|..+|..+++.+..++..  .       ....-+.... ++   +
T Consensus       239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~-~G~~~~  317 (571)
T 2ad6_A          239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPV-NGKMTP  317 (571)
T ss_dssp             CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEE-TTEEEE
T ss_pred             eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEeccc-CCcEEE
Confidence            456677666666554 2                25999999999988766432  1       1112223334 56   4


Q ss_pred             eEEEeeCCCcEEEEEeecceEEEEecCcc-------------cCe--------------------------eEEEEecCC
Q 001295          866 IIAIGMDDSSIQIYNVRVDEVKSKLKGHS-------------KRI--------------------------TGLAFSHAL  906 (1106)
Q Consensus       866 ~la~g~~dg~v~iwd~~~~~~~~~l~~h~-------------~~V--------------------------~~l~~s~d~  906 (1106)
                      +++.++.+|.++++|..+|+.+....-..             .+|                          ..++++|+.
T Consensus       318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~  397 (571)
T 2ad6_A          318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES  397 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred             EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence            67889999999999999998876653211             111                          246788888


Q ss_pred             CEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCceEeeecccCCC
Q 001295          907 NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRES  986 (1106)
Q Consensus       907 ~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~~~~~~~~~h  986 (1106)
                      .+|+....+....++.....         ...+..- ......+..+|.+.  ....++.|..||+.+++.+-.+...  
T Consensus       398 g~~yv~~~~~~~~~~~~~~~---------~~~g~~~-~g~~~~~~~~~~~~--~~~~~g~l~a~D~~tG~~~W~~~~~--  463 (571)
T 2ad6_A          398 RTLYAGLNHICMDWEPFMLP---------YRAGQFF-VGATLAMYPGPNGP--TKKEMGQIRAFDLTTGKAKWTKWEK--  463 (571)
T ss_dssp             TEEEEEEECEEEEEEECCCC---------CCTTSCC-CCEEEEEEECTTST--TSCCCEEEEEECTTTCCEEEEEEES--
T ss_pred             CEEEEEchhccccccccccc---------cccCCcc-ccccceeccCcccc--CCCCCCeEEEEECCCCCEEEEecCC--
Confidence            88888887766665544321         0011000 00001122233221  0013578889999999887665432  


Q ss_pred             CCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295          987 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus       987 ~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
                       ..+.+..+...+..++.++.||.|+.||..+|+.+.++.
T Consensus       464 -~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~  502 (571)
T 2ad6_A          464 -FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK  502 (571)
T ss_dssp             -SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             -CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence             222222233356677789999999999999999998887

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.64  E-value=1.1e-06  Score=88.55  Aligned_cols=201  Identities=10%  Similarity=0.107  Sum_probs=131.4

Q ss_pred             ceeeeecCCCCC--eeEEEEecCCCceEEEeeCCC--cEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEc-CCC
Q 001295          842 KTMATFMPPPPA--ATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG-ADS  916 (1106)
Q Consensus       842 ~~~~~~~~~~~~--v~~l~~s~~d~~~la~g~~dg--~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s-~Dg  916 (1106)
                      +.++++. |...  ...+.|+  ++.++.+.+.+|  .|+++|+.+++.+..+.-. .........+++..|..+. .++
T Consensus        32 ~vv~~~p-hd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~  107 (262)
T 3nol_A           32 QIVHSYP-HDTKAFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDWKDKIVGLTWKNG  107 (262)
T ss_dssp             EEEEEEE-CCTTCEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSS
T ss_pred             EEEEEec-CCCCcccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEeCCEEEEEEeeCC
Confidence            3445553 4443  4788998  467777777776  9999999999998887643 3344433344455555544 588


Q ss_pred             cEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeEEEEecCCceEeeecccCCCCCC---eeE
Q 001295          917 QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAP---ITH  992 (1106)
Q Consensus       917 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v~i~d~~~~~~~~~~~~~~h~~~---v~~  992 (1106)
                      .+.+||.++.+.......    +       .....+++|++.|+++ .++.|.++|..+.+.+..+.......+   +..
T Consensus       108 ~v~v~D~~t~~~~~ti~~----~-------~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNE  176 (262)
T 3nol_A          108 LGFVWNIRNLRQVRSFNY----D-------GEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNE  176 (262)
T ss_dssp             EEEEEETTTCCEEEEEEC----S-------SCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEE
T ss_pred             EEEEEECccCcEEEEEEC----C-------CCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccce
Confidence            999999998765432221    1       1224455678777774 467899999999999888776433333   455


Q ss_pred             EEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCC--CCCCCccceEEEEeCCCCCEEEEE
Q 001295          993 ATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAG--VSSSNVHPLVIAAHPQEPNEFALG 1058 (1106)
Q Consensus       993 l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~d~~~l~t~ 1058 (1106)
                      +.|. +|+..+..-.+..|.+.|..+|+.+..+......+..  .....-.+-.|+|+|+...+++||
T Consensus       177 Le~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          177 LEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             EEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             eEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence            7776 7765555556889999999999999998854333211  001111234899999544455555

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.63  E-value=1.4e-05  Score=93.20  Aligned_cols=166  Identities=13%  Similarity=0.116  Sum_probs=104.2

Q ss_pred             EEEEecCCCceEEEeeCC----------------CcEEEEEeecceEEEEecCcc----------cCeeEEEEe-cCC--
Q 001295          856 FLAFHPQDNNIIAIGMDD----------------SSIQIYNVRVDEVKSKLKGHS----------KRITGLAFS-HAL--  906 (1106)
Q Consensus       856 ~l~~s~~d~~~la~g~~d----------------g~v~iwd~~~~~~~~~l~~h~----------~~V~~l~~s-~d~--  906 (1106)
                      .+++.+ +..++..+..+                +.|.-+|..+|+.+-.++...          .++. +... .+|  
T Consensus       245 ~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~  322 (599)
T 1w6s_A          245 WYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKA  322 (599)
T ss_dssp             CCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCE
T ss_pred             ceeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcE
Confidence            456777 55566666655                379999999999887665421          1121 2222 567  


Q ss_pred             -CEEEEEcCCCcEEEEeCCCcccccceeecc----------cCCC---------------------CCCCCCCceEEEcC
Q 001295          907 -NVLVSSGADSQLCVWSSDGWEKQKNRFLQI----------PTGR---------------------TPTAQSDTRVQFHQ  954 (1106)
Q Consensus       907 -~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~----------~~~~---------------------~~~~~~i~~~~~s~  954 (1106)
                       +.++.++.+|.+.+.|..+++......+..          ..+.                     ......-..++|+|
T Consensus       323 ~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp  402 (599)
T 1w6s_A          323 RKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP  402 (599)
T ss_dssp             EEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET
T ss_pred             EEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC
Confidence             567889999999999999987643322110          0000                     00000113567777


Q ss_pred             CCcEEEEE----------------------------------------eCCeEEEEecCCceEeeecccCCCCCCeeEEE
Q 001295          955 DQIHFLVV----------------------------------------HETQLAIFETTKLECVKQWVPRESSAPITHAT  994 (1106)
Q Consensus       955 dg~~l~~~----------------------------------------~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~  994 (1106)
                      +..++.+.                                        ..+.|..||+.+++.+-.....   .++..-.
T Consensus       403 ~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~---~~~~~g~  479 (599)
T 1w6s_A          403 KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER---FAVWGGT  479 (599)
T ss_dssp             TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES---SCCCSBC
T ss_pred             CCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC---CCccCcc
Confidence            76665441                                        2367889999999876655421   1222111


Q ss_pred             ECCCCCEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295          995 FSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus       995 ~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
                      +...+.+++.++.||.++.||..+|+.+-++.
T Consensus       480 ~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~  511 (599)
T 1w6s_A          480 MATAGDLVFYGTLDGYLKARDSDTGDLLWKFK  511 (599)
T ss_dssp             EEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             eEecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence            22356778889999999999999999998886

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.63  E-value=2.1e-06  Score=86.57  Aligned_cols=187  Identities=10%  Similarity=0.077  Sum_probs=127.3

Q ss_pred             CeeEEEEecCCCEEEEEe-CC--eEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEE
Q 001295          812 AVPCFALSKNDSYVMSAS-GG--KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS  888 (1106)
Q Consensus       812 ~v~~l~~s~~~~~l~~~s-dg--~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~  888 (1106)
                      ....+.|+ ++.+..+++ +|  .|+++|+++++.+..+.... ......+.++++++.+....++.+.+||..+.+.+.
T Consensus        44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~  121 (262)
T 3nol_A           44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVR  121 (262)
T ss_dssp             EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred             ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEE
Confidence            34778898 666555555 55  89999999999998876433 343333333245666666678999999999999999


Q ss_pred             EecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeE
Q 001295          889 KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQL  967 (1106)
Q Consensus       889 ~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v  967 (1106)
                      ++....   ....+++|++.|+.+..++.|.++|..+.+......... .+..-  ..+..+.|. +|+..+.. .++.|
T Consensus       122 ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~-~g~~~--~~lNELe~~-~G~lyan~w~~~~I  194 (262)
T 3nol_A          122 SFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTA-HGEEL--PELNELEWV-DGEIFANVWQTNKI  194 (262)
T ss_dssp             EEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEE-TTEEC--CCEEEEEEE-TTEEEEEETTSSEE
T ss_pred             EEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEecc-CCccc--cccceeEEE-CCEEEEEEccCCeE
Confidence            887533   223444678877777777889999999876543322211 11110  123346666 77766555 67899


Q ss_pred             EEEecCCceEeeecccCCC----------CCCeeEEEECCCCCEEEEEEc
Q 001295          968 AIFETTKLECVKQWVPRES----------SAPITHATFSCDSQLVYACFL 1007 (1106)
Q Consensus       968 ~i~d~~~~~~~~~~~~~~h----------~~~v~~l~~s~d~~~l~t~s~ 1007 (1106)
                      .+.|.++++.+..+...+-          ..-...|||+|+++.|+..+.
T Consensus       195 ~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          195 VRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             EEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             EEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            9999999999888765311          235688999999888776663

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.63  E-value=6.9e-07  Score=89.90  Aligned_cols=196  Identities=13%  Similarity=0.078  Sum_probs=131.1

Q ss_pred             eeeeecCCCCC--eeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeE--EEEecCCCEEEEEcCCCcE
Q 001295          843 TMATFMPPPPA--ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG--LAFSHALNVLVSSGADSQL  918 (1106)
Q Consensus       843 ~~~~~~~~~~~--v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~--l~~s~d~~~l~s~s~Dg~i  918 (1106)
                      .+.++. |...  ...+.|+  ++.++.+.+.+|.|+++|+.+++.+..+ - ......  +++.. +++.+..-.++.+
T Consensus        45 Vv~~~p-hd~~~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g-~~Ly~ltw~~~~v  118 (268)
T 3nok_A           45 IIREYP-HATNAFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDG-ERLYQLTWTEGLL  118 (268)
T ss_dssp             EEEEEE-CCTTCCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECS-SCEEEEESSSCEE
T ss_pred             EEEEEc-CCCccccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeC-CEEEEEEccCCEE
Confidence            445553 4333  4788887  4678888888999999999999988877 2 233444  44432 2444445568899


Q ss_pred             EEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeEEEEecCCceEeeecccCCCCC---CeeEEE
Q 001295          919 CVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSA---PITHAT  994 (1106)
Q Consensus       919 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v~i~d~~~~~~~~~~~~~~h~~---~v~~l~  994 (1106)
                      .+||.++.+.......  . +        ....+++|++.|+++ .++.|.++|.++.+.+..+....+..   .+..+.
T Consensus       119 ~V~D~~Tl~~~~ti~~--~-~--------eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe  187 (268)
T 3nok_A          119 FTWSGMPPQRERTTRY--S-G--------EGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELE  187 (268)
T ss_dssp             EEEETTTTEEEEEEEC--S-S--------CCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred             EEEECCcCcEEEEEeC--C-C--------ceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccE
Confidence            9999999765433221  1 1        123444678887775 57899999999999988887644433   345677


Q ss_pred             ECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccC-----CCCCCCCccceEEEEeCCCCCEEEEE
Q 001295          995 FSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLP-----AGVSSSNVHPLVIAAHPQEPNEFALG 1058 (1106)
Q Consensus       995 ~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~d~~~l~t~ 1058 (1106)
                      |. +|+..+..-.+..|.+.|..+|+.+..+......+     ........  -.|+|+|..+++++||
T Consensus       188 ~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vl--NGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          188 CA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVL--NGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCE--EEEEECTTTCCEEEEE
T ss_pred             Ee-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCce--EEEEEcCCCCEEEEeC
Confidence            76 77655555467899999999999999988542211     01011223  3899999666667766

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.63  E-value=1.7e-05  Score=92.80  Aligned_cols=83  Identities=10%  Similarity=0.087  Sum_probs=54.3

Q ss_pred             CCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEE
Q 001295          872 DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ  951 (1106)
Q Consensus       872 ~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  951 (1106)
                      .+|.|..||+.+++.+-++... ..+.+..+...+..++.++.|+.|+.||.++++.....  ....+.     .-..+.
T Consensus       442 ~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~--~~~~~~-----~~~p~~  513 (571)
T 2ad6_A          442 EMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNF--KMPSGG-----IGSPMT  513 (571)
T ss_dssp             CCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEE--ECSSCC-----CSCCEE
T ss_pred             CCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEE--eCCCCc-----EeeeEE
Confidence            3578999999999988776532 23334344445677888999999999999998764322  222111     113355


Q ss_pred             EcCCCcEEEEE
Q 001295          952 FHQDQIHFLVV  962 (1106)
Q Consensus       952 ~s~dg~~l~~~  962 (1106)
                      +..+|+.++..
T Consensus       514 ~~~~G~~yv~~  524 (571)
T 2ad6_A          514 YSFKGKQYIGS  524 (571)
T ss_dssp             EEETTEEEEEE
T ss_pred             EEECCEEEEEE
Confidence            66888876663

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.60  E-value=2.6e-06  Score=85.72  Aligned_cols=184  Identities=9%  Similarity=0.078  Sum_probs=125.4

Q ss_pred             CCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeE--EEEecCCCceEEEeeCCCcEEEEEeecceEE
Q 001295          811 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATF--LAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK  887 (1106)
Q Consensus       811 ~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~--l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~  887 (1106)
                      .....+.|+. +.+.++.+ +|.|+++|+++++.+..+ . ......  +++.  ++++.+....++.+.+||..+.+.+
T Consensus        55 ~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~  129 (268)
T 3nok_A           55 AFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRE  129 (268)
T ss_dssp             CCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEE
T ss_pred             cccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEE
Confidence            3346788873 44444444 789999999999998887 2 233433  5554  4566666778999999999999999


Q ss_pred             EEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCe
Q 001295          888 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQ  966 (1106)
Q Consensus       888 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~  966 (1106)
                      .++..-. .=..++  +|++.|+.+..++.|.++|..+.+......... .+..  ...+..+.|. +|+..+.. .++.
T Consensus       130 ~ti~~~~-eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~-~g~~--v~~lNeLe~~-dG~lyanvw~s~~  202 (268)
T 3nok_A          130 RTTRYSG-EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKL-RGQP--VELINELECA-NGVIYANIWHSSD  202 (268)
T ss_dssp             EEEECSS-CCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEE-TTEE--CCCEEEEEEE-TTEEEEEETTCSE
T ss_pred             EEEeCCC-ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCC-CCcc--cccccccEEe-CCEEEEEECCCCe
Confidence            9987532 223444  678888888788999999999876544322221 1110  0123456666 77655555 6789


Q ss_pred             EEEEecCCceEeeecccCC-----------CCCCeeEEEECCCCCEEEEEE
Q 001295          967 LAIFETTKLECVKQWVPRE-----------SSAPITHATFSCDSQLVYACF 1006 (1106)
Q Consensus       967 v~i~d~~~~~~~~~~~~~~-----------h~~~v~~l~~s~d~~~l~t~s 1006 (1106)
                      |.+.|.++++.+..+...+           -..-...||++|+++.|+..+
T Consensus       203 I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          203 VLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             EEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            9999999999988876431           123568899999877665554

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.54  E-value=0.00022  Score=83.50  Aligned_cols=397  Identities=10%  Similarity=0.021  Sum_probs=200.1

Q ss_pred             CCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCC-------eeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEE
Q 001295          424 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGG-------VNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI  496 (1106)
Q Consensus       424 g~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~-------V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~  496 (1106)
                      +..+.+++.++.|.-+|..+|+.+-.... ......       -..+++  .+.  .++.++.|+.|..+|.++|+.+..
T Consensus        68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~-~~~~~~~~~~~~~~~g~a~--~~~--~v~~~t~dg~l~AlD~~TG~~~W~  142 (582)
T 1flg_A           68 DGVIYVTASYSRLFALDAKTGKRLWTYNH-RLPDDIRPCCDVVNRGAAI--YGD--KVFFGTLDASVVALNKNTGKVVWK  142 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEEC-CCCTTCCCSSCSCCCCCEE--ETT--EEEEEETTTEEEEEESSSCCEEEE
T ss_pred             CCEEEEEcCCCCEEEEECCCCcEEEEEcC-CCCcccccccccCCCccEE--ECC--EEEEEeCCCEEEEEECCCCCEEee
Confidence            34455555544488899999987653321 111000       012223  233  467778899999999999999877


Q ss_pred             EeccCC----CeE-EEecccc-CCce-EEEEEe------cCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEe
Q 001295          497 FEGHEA----PVY-SVCPHHK-ENIQ-FIFSTA------LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG  563 (1106)
Q Consensus       497 ~~~h~~----~v~-~~~~~~~-~~~~-~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~  563 (1106)
                      ......    .+. +..+... .+++ .+++++      .++.|..+|..+++.+.........+     .|++...+..
T Consensus       143 ~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~-----~p~~~~~~~~  217 (582)
T 1flg_A          143 KKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHM-----GRLNGKDSTV  217 (582)
T ss_dssp             EECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCE-----EEETTEEEEE
T ss_pred             ecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCcccc-----ccccCccccc
Confidence            654321    111 0011111 1222 566655      37999999999988877654322111     1111111100


Q ss_pred             -----------e--------------eccceeEEEEcCCCCEEEEEEC--------------------C----CeEEEEE
Q 001295          564 -----------F--------------RKRSLGVVQFDTTKNRFLAAGD--------------------D----FSIKFWD  594 (1106)
Q Consensus       564 -----------~--------------~~~~i~~~~~~~~~~~l~~~~~--------------------d----~~i~iwd  594 (1106)
                                 .              ........+++|....++.+..                    |    +.|..+|
T Consensus       218 ~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD  297 (582)
T 1flg_A          218 TGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVD  297 (582)
T ss_dssp             SSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEEC
T ss_pred             ccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEe
Confidence                       0              0011123567777777776653                    2    6899999


Q ss_pred             CCCcceeEEEccCCCC----CCcCe-EEEc---cCCC---EEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCC
Q 001295          595 MDSVQLLTSIDADGGL----PASPR-IRFN---KDGC---LLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS  663 (1106)
Q Consensus       595 ~~~~~~~~~~~~~~~~----~~v~~-v~~s---~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  663 (1106)
                      ..+|+.+-.++...+.    ..+.. +.+.   .+|+   .++.++.+|.++++|..+++ .+-.+..... +..     
T Consensus       298 ~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~-~lw~~~~~~~-~~~-----  370 (582)
T 1flg_A          298 PSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGK-LQNAFPFVDN-ITW-----  370 (582)
T ss_dssp             TTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCC-EEEEEESSSC-CCS-----
T ss_pred             CCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCC-EecccccccC-ccc-----
Confidence            9999999887643221    01111 2222   4674   78889999999999999983 3322211100 000     


Q ss_pred             CCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccc
Q 001295          664 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRA  743 (1106)
Q Consensus       664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~  743 (1106)
                         ..  +       +..   ....+... ..+.      +.  .+..  .+             ......+..|.....
T Consensus       371 ---~~--~-------~~~---~~g~p~~~-~~~~------~~--~~~~--~~-------------~~~~~~~~~P~~~Gg  411 (582)
T 1flg_A          371 ---AS--H-------IDL---KTGRPVER-EGQR------PP--LPEP--GQ-------------KHGKAVEVSPPFLGG  411 (582)
T ss_dssp             ---EE--E-------ECT---TTCCEEEC-TTCS------CC--CCCT--TC-------------SSCCCEEESSCTTCS
T ss_pred             ---cc--c-------ccc---cCCCEeEc-cccC------Cc--cccc--cc-------------cCCCceEECcCCccc
Confidence               00  0       000   00000000 0000      00  0000  00             000000011110011


Q ss_pred             cceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCC
Q 001295          744 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS  823 (1106)
Q Consensus       744 ~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~  823 (1106)
                      ..-..++++|+...+++...+-...++....                  ....|           ....-..+...|++.
T Consensus       412 ~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~------------------~~~~g-----------~~~~g~~~~~~p~~~  462 (582)
T 1flg_A          412 KNWNPMAYSQDTGLFYVPANHWKEDYWTEEV------------------SYTKG-----------SAYLGMGFRIKRMYD  462 (582)
T ss_dssp             SCSSCCEECTTTCCEEEEEECEEEEEEECCC------------------CCCTT-----------SCCCCEEEEEEESCS
T ss_pred             cCCCCceECCCCCEEEEechhcceeeecccc------------------cccCC-----------CceeccceeecCCCC
Confidence            1123568888887777776665444443210                  00011           100011122223310


Q ss_pred             EEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCe-eEEEE
Q 001295          824 YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI-TGLAF  902 (1106)
Q Consensus       824 ~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V-~~l~~  902 (1106)
                          ..+|.|..||+.+++.+....... .+..-.+.. .+.++++|+.||.++.||..+|+.+.+++.....+ .-+.|
T Consensus       463 ----~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~t-agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y  536 (582)
T 1flg_A          463 ----DHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITW  536 (582)
T ss_dssp             ----SCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE
T ss_pred             ----CCcceEEEEECCCCCEEEEecCCC-CCcccceEe-CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEE
Confidence                115889999999998876654322 222212222 35577779999999999999999998887654322 23677


Q ss_pred             ecCCCEEEE
Q 001295          903 SHALNVLVS  911 (1106)
Q Consensus       903 s~d~~~l~s  911 (1106)
                      ..||+..++
T Consensus       537 ~~~G~qYv~  545 (582)
T 1flg_A          537 EQDGEQYLG  545 (582)
T ss_dssp             EETTEEEEE
T ss_pred             EECCEEEEE
Confidence            778874443

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.52  E-value=0.0084  Score=75.59  Aligned_cols=215  Identities=11%  Similarity=0.098  Sum_probs=121.8

Q ss_pred             cCccccCCCCCCcccc-ccCCCCCCCCeeEEEEe---c-CCCEEEEEe-----------CCeEEEEEcCCCceeeee-cC
Q 001295          787 VAPQLWQPPSGIMMTN-DVTDSNPEEAVPCFALS---K-NDSYVMSAS-----------GGKISLFNMMTFKTMATF-MP  849 (1106)
Q Consensus       787 ~~~~~w~~~~~~~~~~-~~~~~~~~~~v~~l~~s---~-~~~~l~~~s-----------dg~i~vwd~~~~~~~~~~-~~  849 (1106)
                      ..+++.|+.+...+.. .+.   ....+.+++.-   . ...++++|.           .|.|.+|++..++..... ..
T Consensus       807 s~i~lidp~t~~~i~~~~l~---~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~  883 (1158)
T 3ei3_A          807 HNLLIIDQHTFEVLHAHQFL---QNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKE  883 (1158)
T ss_dssp             EEEEEEETTTCCEEEEEECC---TTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEEeCCCCeEEEEEeCC---CCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEE
Confidence            3456667666554322 222   34455555532   2 246888773           256999998754332111 12


Q ss_pred             CCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccc
Q 001295          850 PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQ  929 (1106)
Q Consensus       850 ~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~  929 (1106)
                      ..+.|++++--  +|++||..  ...|++|++...+.+..-..+-..|..+.....+.+++.|+.-..|.+..++..+  
T Consensus       884 v~g~v~al~~~--~g~Lla~i--g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~--  957 (1158)
T 3ei3_A          884 VKGAVYSMVEF--NGKLLASI--NSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPME--  957 (1158)
T ss_dssp             ESSCEEEEEEE--TTEEEEEE--TTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTT--
T ss_pred             cCCcCEEEeee--CCEEEEEc--CCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCC--
Confidence            35678888755  45555533  5789999998765333111122224433443457899999988888877654322  


Q ss_pred             cceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCc----------eEeeecccCCCCCCeeEEE---EC
Q 001295          930 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL----------ECVKQWVPRESSAPITHAT---FS  996 (1106)
Q Consensus       930 ~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~----------~~~~~~~~~~h~~~v~~l~---~s  996 (1106)
                       ...........+  ..++++.|-.++.++++-.++.+.++.....          .....+.   ....|+++.   +.
T Consensus       958 -~~L~~~a~D~~~--~~vta~~~ld~~t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fh---lG~~vt~~~~~sl~ 1031 (1158)
T 3ei3_A          958 -GNFEEIARDFNP--NWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFH---LGEFVNVFCHGSLV 1031 (1158)
T ss_dssp             -TEEEEEEECCSC--BCEEEEEEEETTEEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEE---CSSCEEEEEECCSC
T ss_pred             -CeEEEEEeeccc--ccEEEEEEEccCcEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEe---CCCcEeeEEeeeee
Confidence             122222222222  4678888877776666567788888765431          1122222   155677776   33


Q ss_pred             CC---------CCEEEEEEcCCeEEEEEc
Q 001295          997 CD---------SQLVYACFLDATVCVFSA 1016 (1106)
Q Consensus       997 ~d---------~~~l~t~s~Dg~i~vwd~ 1016 (1106)
                      +.         ...++.++.+|.|.+.-.
T Consensus      1032 ~~~~~~~~~~~~~~il~~T~~GsIg~l~p 1060 (1158)
T 3ei3_A         1032 MQNLGETSTPTQGSVLFGTVNGMIGLVTS 1060 (1158)
T ss_dssp             CC-------CEEEEEEEEETTSCEEEEEE
T ss_pred             cCCCccccccccceEEEEecCCEEEEEEE
Confidence            32         234777888999888743

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.50  E-value=0.00011  Score=77.04  Aligned_cols=223  Identities=11%  Similarity=0.039  Sum_probs=137.4

Q ss_pred             CCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEE
Q 001295          351 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA  430 (1106)
Q Consensus       351 ~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~  430 (1106)
                      ..+.+++|++++.+|+++-..++.|.+++..++....                   +....-.....++++|++..|..+
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~-------------------~~~~~~~~p~~ia~d~~~~~lyv~   96 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT-------------------IIRQDLGSPEGIALDHLGRTIFWT   96 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE-------------------EECTTCCCEEEEEEETTTTEEEEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE-------------------EEECCCCCccEEEEEecCCeEEEE
Confidence            4578999999887777777777899999987654321                   111222467899999976655554


Q ss_pred             -eCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecC--CCcEEEEeCCCCceeEEEe-ccCCCeEE
Q 001295          431 -YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD--DKTIKVWDATNGAKQYIFE-GHEAPVYS  506 (1106)
Q Consensus       431 -~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~-~h~~~v~~  506 (1106)
                       ...+.|.+++.+.... ..+  ..........++++|++.. ++++...  .+.|..+++.. .....+. ........
T Consensus        97 d~~~~~I~~~~~~g~~~-~~~--~~~~~~~P~~i~vd~~~g~-lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~~~~~P~g  171 (267)
T 1npe_A           97 DSQLDRIEVAKMDGTQR-RVL--FDTGLVNPRGIVTDPVRGN-LYWTDWNRDNPKIETSHMDG-TNRRILAQDNLGLPNG  171 (267)
T ss_dssp             ETTTTEEEEEETTSCSC-EEE--ECSSCSSEEEEEEETTTTE-EEEEECCSSSCEEEEEETTS-CCCEEEECTTCSCEEE
T ss_pred             ECCCCEEEEEEcCCCCE-EEE--EECCCCCccEEEEeeCCCE-EEEEECCCCCcEEEEEecCC-CCcEEEEECCCCCCcE
Confidence             4568899999875432 211  1112245789999997764 3344332  46888888653 3333332 23345678


Q ss_pred             EeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEE-
Q 001295          507 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-  585 (1106)
Q Consensus       507 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-  585 (1106)
                      ++++++. +.+.++....+.|..+|+........... ....                     ..++..  +..++.+. 
T Consensus       172 ia~d~~~-~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P---------------------~gi~~d--~~~lyva~~  226 (267)
T 1npe_A          172 LTFDAFS-SQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYP---------------------FAVTSY--GKNLYYTDW  226 (267)
T ss_dssp             EEEETTT-TEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSE---------------------EEEEEE--TTEEEEEET
T ss_pred             EEEcCCC-CEEEEEECCCCEEEEEecCCCceEEEecC-CCCc---------------------eEEEEe--CCEEEEEEC
Confidence            8876533 25566666778999998864221111111 1111                     122322  23455444 


Q ss_pred             CCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCC
Q 001295          586 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC  623 (1106)
Q Consensus       586 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~  623 (1106)
                      ..+.|..+|..+++.+..+.... ......+++.|++.
T Consensus       227 ~~~~v~~~d~~~g~~~~~i~~g~-~~~p~gi~~~~~~~  263 (267)
T 1npe_A          227 KTNSVIAMDLAISKEMDTFHPHK-QTRLYGITIALSQC  263 (267)
T ss_dssp             TTTEEEEEETTTTEEEEEECCSS-CCCCCCEEEECSCC
T ss_pred             CCCeEEEEeCCCCCceEEEcccc-ccccceeeecCccC
Confidence            56899999999999888886432 12357788888764

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.49  E-value=0.00015  Score=84.75  Aligned_cols=82  Identities=16%  Similarity=0.162  Sum_probs=52.1

Q ss_pred             CCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEE
Q 001295          872 DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ  951 (1106)
Q Consensus       872 ~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  951 (1106)
                      .+|.|.-||+.+++.+-+... ..++.+-.....+.+++.++.|+.++.||.++++..-..  +...+.     ...-+.
T Consensus       451 ~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~--~l~~g~-----~~~P~~  522 (599)
T 1w6s_A          451 GLGQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKF--KIPSGA-----IGYPMT  522 (599)
T ss_dssp             CCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEE--ECSSCC-----CSCCEE
T ss_pred             CcCeEEEEECCCCCEEeEecC-CCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEe--eCCCCc-----EeccEE
Confidence            357899999999988766542 122222123335678888999999999999998864332  222221     123466


Q ss_pred             EcCCCcEEEE
Q 001295          952 FHQDQIHFLV  961 (1106)
Q Consensus       952 ~s~dg~~l~~  961 (1106)
                      +..+|++.++
T Consensus       523 y~~~G~qyv~  532 (599)
T 1w6s_A          523 YTHKGTQYVA  532 (599)
T ss_dssp             EEETTEEEEE
T ss_pred             EEeCCEEEEE
Confidence            6778875554

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.48  E-value=5.7e-05  Score=81.86  Aligned_cols=238  Identities=12%  Similarity=0.081  Sum_probs=145.8

Q ss_pred             CeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecC--------------------CCCCeeEEEEecCCCceEEEe
Q 001295          812 AVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP--------------------PPPAATFLAFHPQDNNIIAIG  870 (1106)
Q Consensus       812 ~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~--------------------~~~~v~~l~~s~~d~~~la~g  870 (1106)
                      ...+++++++++++.++. ++.|..|+..++... .+..                    ....+..+++.++++++++ +
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v-~   97 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI-V   97 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE-E
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEE-E
Confidence            356788999998677776 789999998765432 2210                    0135788999963455444 4


Q ss_pred             eCCCcEEEEEeecceEEEEec----C-cccCeeEEEEec-CCCEEEEEcC-----------------CCcEEEEeCCCcc
Q 001295          871 MDDSSIQIYNVRVDEVKSKLK----G-HSKRITGLAFSH-ALNVLVSSGA-----------------DSQLCVWSSDGWE  927 (1106)
Q Consensus       871 ~~dg~v~iwd~~~~~~~~~l~----~-h~~~V~~l~~s~-d~~~l~s~s~-----------------Dg~i~vwd~~~~~  927 (1106)
                      ...+.|..+|..+++. ..+.    + .......+++.+ +|.+.++-..                 ++.|..||..+++
T Consensus        98 d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~  176 (322)
T 2fp8_A           98 DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE  176 (322)
T ss_dssp             ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred             ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence            4445588888765542 2221    1 123468899999 9987776533                 3668888876654


Q ss_pred             cccceeecccCCCCCCCCCCceEEEcCCCcEEEEE--eCCeEEEEecCCce--EeeecccCCCCCCeeEEEECCCCCEEE
Q 001295          928 KQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLE--CVKQWVPRESSAPITHATFSCDSQLVY 1003 (1106)
Q Consensus       928 ~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~--~d~~v~i~d~~~~~--~~~~~~~~~h~~~v~~l~~s~d~~~l~ 1003 (1106)
                      ...  .....       .....++++|+|+.|.++  ..+.|.+|++.+..  ....+.. . .. ...++++++|.+.+
T Consensus       177 ~~~--~~~~~-------~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~-~g-P~gi~~d~~G~l~v  244 (322)
T 2fp8_A          177 TTL--LLKEL-------HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-I-PN-PGNIKRNADGHFWV  244 (322)
T ss_dssp             EEE--EEEEE-------SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-C-SS-EEEEEECTTSCEEE
T ss_pred             EEE--eccCC-------ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-C-CC-CCCeEECCCCCEEE
Confidence            211  11111       134789999999876664  55789999987521  1111111 1 22 78899999998766


Q ss_pred             EEEc----------CCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCC
Q 001295         1004 ACFL----------DATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus      1004 t~s~----------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
                      +...          .+.|..+|. .++.+..+.    .+.+.....+.  .+++.  +++++++...++.|.++++....
T Consensus       245 a~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~----~~~g~~~~~~~--~~~~~--~g~L~v~~~~~~~i~~~~~~~~~  315 (322)
T 2fp8_A          245 SSSEELDGNMHGRVDPKGIKFDE-FGNILEVIP----LPPPFAGEHFE--QIQEH--DGLLYIGTLFHGSVGILVYDKKG  315 (322)
T ss_dssp             EEEEETTSSTTSCEEEEEEEECT-TSCEEEEEE----CCTTTTTSCCC--EEEEE--TTEEEEECSSCSEEEEEEC----
T ss_pred             EecCcccccccCCCccEEEEECC-CCCEEEEEE----CCCCCccccce--EEEEe--CCEEEEeecCCCceEEEeccccc
Confidence            6544          467888886 477776665    22221111123  56663  46677776678889999876544

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.48  E-value=1.1e-05  Score=80.59  Aligned_cols=201  Identities=11%  Similarity=0.118  Sum_probs=129.7

Q ss_pred             ceeeeecCCCC--CeeEEEEecCCCceEEEeeCCC--cEEEEEeecceEEEEecCcccCeeEEEEecCCCEE-EEEcCCC
Q 001295          842 KTMATFMPPPP--AATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVL-VSSGADS  916 (1106)
Q Consensus       842 ~~~~~~~~~~~--~v~~l~~s~~d~~~la~g~~dg--~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l-~s~s~Dg  916 (1106)
                      +.+.++ .|..  -...+.|+.  +.++.+.+.+|  .|+.+|+.+++.+..+.-... ........++..| +..-.++
T Consensus        10 ~v~~~~-phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~   85 (243)
T 3mbr_X           10 RVVKRY-PHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRNH   85 (243)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSS
T ss_pred             EEEEEc-CCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeCC
Confidence            344555 3543  356899985  56677766654  899999999999887754332 3333333334444 4455688


Q ss_pred             cEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeEEEEecCCceEeeecccCCCCC---CeeE
Q 001295          917 QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSA---PITH  992 (1106)
Q Consensus       917 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v~i~d~~~~~~~~~~~~~~h~~---~v~~  992 (1106)
                      .+.+||.++.+.......    +.       ....+++|++.|.++ .++.|.++|..+.+.++.+....+..   .+..
T Consensus        86 ~v~v~D~~tl~~~~ti~~----~~-------~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNe  154 (243)
T 3mbr_X           86 EGFVYDLATLTPRARFRY----PG-------EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNE  154 (243)
T ss_dssp             EEEEEETTTTEEEEEEEC----SS-------CCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred             EEEEEECCcCcEEEEEeC----CC-------CceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccccccee
Confidence            999999998665432221    11       224445677777664 57789999999999988887644433   3455


Q ss_pred             EEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCC---CCCccceEEEEeCCCCCEEEEE
Q 001295          993 ATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVS---SSNVHPLVIAAHPQEPNEFALG 1058 (1106)
Q Consensus       993 l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~d~~~l~t~ 1058 (1106)
                      +.+. +|+..+..-.+..|.+.|..+|+.+..+......+....   ...-.+-.|+|+|..+++++||
T Consensus       155 Le~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          155 LEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             EEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             eEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            6665 666555554678999999999999999886544332210   1111234899999655556665

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.48  E-value=2.2e-05  Score=78.45  Aligned_cols=187  Identities=10%  Similarity=0.114  Sum_probs=125.6

Q ss_pred             CCCeeEEEEecCCCEEEEEe-C--CeEEEEEcCCCceeeeecCCCCC-eeEEEEecCCCceEEEeeCCCcEEEEEeecce
Q 001295          810 EEAVPCFALSKNDSYVMSAS-G--GKISLFNMMTFKTMATFMPPPPA-ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE  885 (1106)
Q Consensus       810 ~~~v~~l~~s~~~~~l~~~s-d--g~i~vwd~~~~~~~~~~~~~~~~-v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~  885 (1106)
                      ......+.|+. +.+..+.+ +  ..|+.+|+.+++.+......... --.+++.  ++++.+....++.+.+||..+.+
T Consensus        20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~   96 (243)
T 3mbr_X           20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT   96 (243)
T ss_dssp             TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred             ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc
Confidence            34466889986 45445544 3  48999999999999887643321 1234443  56677777789999999999999


Q ss_pred             EEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eC
Q 001295          886 VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE  964 (1106)
Q Consensus       886 ~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d  964 (1106)
                      .+.++.....   ...+.+|+..|+.+..++.|.++|..+.+......... .+..-  ..+..+.+. +|+..+.. .+
T Consensus        97 ~~~ti~~~~~---Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~-~g~~~--~~lNeLe~~-~G~lyanvw~s  169 (243)
T 3mbr_X           97 PRARFRYPGE---GWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA-GGRPL--DNLNELEWV-NGELLANVWLT  169 (243)
T ss_dssp             EEEEEECSSC---CCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEE-TTEEC--CCEEEEEEE-TTEEEEEETTT
T ss_pred             EEEEEeCCCC---ceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc-CCccc--ccceeeEEe-CCEEEEEECCC
Confidence            9999875432   23444677777777778899999999866543322211 11100  122344544 67766555 67


Q ss_pred             CeEEEEecCCceEeeecccCC-----------CCCCeeEEEECCCCCEEEEEE
Q 001295          965 TQLAIFETTKLECVKQWVPRE-----------SSAPITHATFSCDSQLVYACF 1006 (1106)
Q Consensus       965 ~~v~i~d~~~~~~~~~~~~~~-----------h~~~v~~l~~s~d~~~l~t~s 1006 (1106)
                      ..|.+.|.++++.+..+...+           -..-...|+++|+++.|+..+
T Consensus       170 ~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          170 SRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             TEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             CeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            899999999999988876431           123568899999887766655

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.47  E-value=0.00017  Score=84.51  Aligned_cols=150  Identities=16%  Similarity=0.107  Sum_probs=94.5

Q ss_pred             CcEEEEEeecceEEEEecC--ccc----CeeE-EEEe---cCCC---EEEEEcCCCcEEEEeCCCcccccceeecc----
Q 001295          874 SSIQIYNVRVDEVKSKLKG--HSK----RITG-LAFS---HALN---VLVSSGADSQLCVWSSDGWEKQKNRFLQI----  936 (1106)
Q Consensus       874 g~v~iwd~~~~~~~~~l~~--h~~----~V~~-l~~s---~d~~---~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~----  936 (1106)
                      +.|.-+|..+|+.+-.++.  |..    .+.. +.+.   .+|+   .|+.++.+|.+.++|..+++.........    
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~  370 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITW  370 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCS
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccc
Confidence            5899999999998877643  321    1111 2222   4674   78889999999999999887543221110    


Q ss_pred             ------cCCC-------CC--------------------CCCCCceEEEcCCCcEEEE-Ee-------------------
Q 001295          937 ------PTGR-------TP--------------------TAQSDTRVQFHQDQIHFLV-VH-------------------  963 (1106)
Q Consensus       937 ------~~~~-------~~--------------------~~~~i~~~~~s~dg~~l~~-~~-------------------  963 (1106)
                            ..+.       .+                    ....-..++++|+...+.+ ..                   
T Consensus       371 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~  450 (582)
T 1flg_A          371 ASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAY  450 (582)
T ss_dssp             EEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred             cccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCce
Confidence                  0000       00                    0000124677777655544 21                   


Q ss_pred             --------------CCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295          964 --------------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus       964 --------------d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
                                    ++.|..||+.+++.+-.....   .++..-.+...+.+++.++.||.++.||..+|+.+-++.
T Consensus       451 ~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~---~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~  524 (582)
T 1flg_A          451 LGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH---LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ  524 (582)
T ss_dssp             CCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES---SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             eccceeecCCCCCCcceEEEEECCCCCEEEEecCC---CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEec
Confidence                          477999999999887555432   122221122246788889999999999999999998887

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.44  E-value=0.00013  Score=78.26  Aligned_cols=246  Identities=13%  Similarity=0.055  Sum_probs=144.5

Q ss_pred             CCCCcceeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeE
Q 001295          337 EDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN  416 (1106)
Q Consensus       337 ~~~~~~~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~  416 (1106)
                      +..+.++...+.-......++|+++|+ |+++-..++.|..||.... ....     +.               ......
T Consensus        18 ~~~~~~~~~~~p~~~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g~-~~~~-----~~---------------~~~~p~   75 (306)
T 2p4o_A           18 ELAPAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGN-QQIH-----AT---------------VEGKVS   75 (306)
T ss_dssp             CCCCEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCC-EEEE-----EE---------------CSSEEE
T ss_pred             cCCCceEeEeCCCCCCcceEEECCCCC-EEEEeCCCCeEEEECCCCc-eEEE-----Ee---------------CCCCce
Confidence            334555666666557889999999998 6777667889999998753 2211     11               123588


Q ss_pred             EEEEccCCCEEEEEeCC-C-eEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCce-
Q 001295          417 RVIWSPDGSLFGVAYSR-H-IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK-  493 (1106)
Q Consensus       417 ~l~~spdg~~las~~~d-~-~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-  493 (1106)
                      .++++++|+++++.... + .|..+|..+++.. .+..+. .......++..+++.  .+++...++.|.++|..+++. 
T Consensus        76 gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~-~~~~~~-~~~~~~g~~~~~~~~--~~v~d~~~g~i~~~d~~~~~~~  151 (306)
T 2p4o_A           76 GLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE-TLLTLP-DAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGS  151 (306)
T ss_dssp             EEEECTTSCEEEEEECTTSCEEEEEECTTSCEE-EEEECT-TCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEE
T ss_pred             eEEEcCCCcEEEEeccCCcceEEEEcCCCCeEE-EEEeCC-CccccCcccccCCCc--EEEEECCCCeEEEEeCCCCcEe
Confidence            99999999976665432 2 4667777777643 222221 122334555555554  566666688999999776532 


Q ss_pred             eEEEec---------cCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEee
Q 001295          494 QYIFEG---------HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF  564 (1106)
Q Consensus       494 ~~~~~~---------h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~  564 (1106)
                      +....+         .......+  +++. +.++++-...+.|..+++.......     ...+.. .+           
T Consensus       152 v~~~~~~~~~~~~~~~~~~pngi--s~dg-~~lyv~d~~~~~I~~~~~~~~g~~~-----~~~~~~-~~-----------  211 (306)
T 2p4o_A          152 IWLEHPMLARSNSESVFPAANGL--KRFG-NFLYVSNTEKMLLLRIPVDSTDKPG-----EPEIFV-EQ-----------  211 (306)
T ss_dssp             EEEECGGGSCSSTTCCSCSEEEE--EEET-TEEEEEETTTTEEEEEEBCTTSCBC-----CCEEEE-ES-----------
T ss_pred             EEEECCccccccccCCCCcCCCc--CcCC-CEEEEEeCCCCEEEEEEeCCCCCCC-----ccEEEe-cc-----------
Confidence            221111         11223444  3332 2455666678899999987421110     000000 00           


Q ss_pred             eccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEc---cCCCEEEEEeCC
Q 001295          565 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN---KDGCLLAVSTND  631 (1106)
Q Consensus       565 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s---~~~~~l~~~~~d  631 (1106)
                        .....++++++|+.+++....+.|.+++.. ++...............+++|.   ++++.|++.+..
T Consensus       212 --~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          212 --TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             --CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             --CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence              122336677777777776677899999975 6553322222223457889998   888877776654

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.38  E-value=0.0001  Score=79.82  Aligned_cols=253  Identities=11%  Similarity=0.071  Sum_probs=142.6

Q ss_pred             CCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCcc--cc-c---cccCCCCcCeEEEEEcc-C
Q 001295          351 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMP--LQ-A---ALVKDPGVSVNRVIWSP-D  423 (1106)
Q Consensus       351 ~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~--~~-~---~~~~~h~~~V~~l~~sp-d  423 (1106)
                      ....+++|+++|+ ++.++..++.|..||..+++...   +.   .......  .. .   .........+..+++.+ +
T Consensus        19 ~~p~~i~~d~~g~-~l~v~~~~~~i~~~~~~~~~~~~---~~---~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~   91 (322)
T 2fp8_A           19 YAPNSFTFDSTNK-GFYTSVQDGRVIKYEGPNSGFVD---FA---YASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN   91 (322)
T ss_dssp             SCCCCEECCTTCS-SEEEECTTSEEEEECCTTTCEEE---EE---ESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTT
T ss_pred             CCceEEEEcCCCC-EEEEEcCCCeEEEECCCCCceEE---Ee---cccccccccccccccchhccccCCCCceEEEcCCC
Confidence            4567889999998 47778888999999987654321   10   0000000  00 0   00000113578999998 5


Q ss_pred             CCEEEEEeCCCeEEEEEccCCceeeeee-eecc-ccCCeeEEEEcC-CCCceEEEEecC-----------------CCcE
Q 001295          424 GSLFGVAYSRHIVQIYSYHGGDEVRQHL-EIDA-HVGGVNDIAFSH-PNKQLCVITCGD-----------------DKTI  483 (1106)
Q Consensus       424 g~~las~~~d~~v~iwd~~~~~~~~~~~-~l~~-h~~~V~~~~~s~-d~~~~~l~s~~~-----------------d~~i  483 (1106)
                      |+ |.++...+.|..+|..+++. ..+. ...+ .......+++.+ +|.  +.++...                 ++.|
T Consensus        92 g~-l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~--l~v~d~~~~~~~~~~~~~~~~~~~~g~v  167 (322)
T 2fp8_A           92 NQ-LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGI--VYFTDVSTLYDDRGVQQIMDTSDKTGRL  167 (322)
T ss_dssp             TE-EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCC--EEEEESCSSCCTTCHHHHHHHTCCCEEE
T ss_pred             Cc-EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCE--EEEECCcccccccccceehcccCCCceE
Confidence            65 44454445588888776542 2111 1111 123578899999 887  5555322                 3678


Q ss_pred             EEEeCCCCceeEEEeccCCCeEEEeccccCCceEE-EEEecCCeEEEEeCCCCC--ceeEeeCCCCeeEEEEEecCCCeE
Q 001295          484 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI-FSTALDGKIKAWLYDNLG--SRVDYEAPGRWCTTMAYSADGTRT  560 (1106)
Q Consensus       484 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~~  560 (1106)
                      ..||..+++...... .......+++++  +++.| ++-...+.|..|++....  ....+..... .            
T Consensus       168 ~~~d~~~~~~~~~~~-~~~~p~gia~~~--dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P------------  231 (322)
T 2fp8_A          168 IKYDPSTKETTLLLK-ELHVPGGAEVSA--DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-P------------  231 (322)
T ss_dssp             EEEETTTTEEEEEEE-EESCCCEEEECT--TSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-E------------
T ss_pred             EEEeCCCCEEEEecc-CCccCcceEECC--CCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-C------------
Confidence            899987776433222 223345677654  44544 454667899999987421  1111110001 2            


Q ss_pred             EEeeeccceeEEEEcCCCCEEEEEEC----------CCeEEEEECCCcceeEEEccCCC--CCCcCeEEEccCCCEEEEE
Q 001295          561 YQGFRKRSLGVVQFDTTKNRFLAAGD----------DFSIKFWDMDSVQLLTSIDADGG--LPASPRIRFNKDGCLLAVS  628 (1106)
Q Consensus       561 ~~~~~~~~i~~~~~~~~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~~s~~~~~l~~~  628 (1106)
                               ..++++++|++.++...          .+.|..+|. .++.+..+.....  ...+.++++ .+++++++.
T Consensus       232 ---------~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~  300 (322)
T 2fp8_A          232 ---------GNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGT  300 (322)
T ss_dssp             ---------EEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEEC
T ss_pred             ---------CCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEee
Confidence                     23555666665555433          467888886 4777766654322  234666766 466666666


Q ss_pred             eCCCcEEEEEccC
Q 001295          629 TNDNGIKILATSD  641 (1106)
Q Consensus       629 ~~dg~i~iwd~~~  641 (1106)
                      ..++.|..+++..
T Consensus       301 ~~~~~i~~~~~~~  313 (322)
T 2fp8_A          301 LFHGSVGILVYDK  313 (322)
T ss_dssp             SSCSEEEEEEC--
T ss_pred             cCCCceEEEeccc
Confidence            6778899998754

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.38  E-value=0.00018  Score=77.14  Aligned_cols=226  Identities=11%  Similarity=-0.010  Sum_probs=137.2

Q ss_pred             cceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCC
Q 001295          744 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS  823 (1106)
Q Consensus       744 ~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~  823 (1106)
                      .....++++++++.+++-..++.|..|+....       ..     .+|.               ....+..++++++|+
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-------~~-----~~~~---------------~~~~p~gia~~~dG~   84 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-------QQ-----IHAT---------------VEGKVSGLAFTSNGD   84 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-------EE-----EEEE---------------CSSEEEEEEECTTSC
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-------eE-----EEEe---------------CCCCceeEEEcCCCc
Confidence            45678999999986666556788887764321       00     0010               123578899999999


Q ss_pred             EEEEEe-CC--eEEEEEcCCCceeeeecC-CCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecce--EEEE--------
Q 001295          824 YVMSAS-GG--KISLFNMMTFKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE--VKSK--------  889 (1106)
Q Consensus       824 ~l~~~s-dg--~i~vwd~~~~~~~~~~~~-~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~--~~~~--------  889 (1106)
                      ++++.. .+  .|..++..+++....... .......++..+ ++..+++-..++.|+++|..+++  ....        
T Consensus        85 l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~  163 (306)
T 2p4o_A           85 LVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSN  163 (306)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSS
T ss_pred             EEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCcccccc
Confidence            766554 22  477777777765432221 122234556555 56656655568899999876542  2110        


Q ss_pred             ecCcccCeeEEEEecCCCEEE-EEcCCCcEEEEeCCC-cccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCe
Q 001295          890 LKGHSKRITGLAFSHALNVLV-SSGADSQLCVWSSDG-WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQ  966 (1106)
Q Consensus       890 l~~h~~~V~~l~~s~d~~~l~-s~s~Dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~  966 (1106)
                      ..+.....+.+  ++|++.|. +-...+.|.+++++. ++..........       .....++++++|+++++ ...+.
T Consensus       164 ~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-------~~P~gi~vd~dG~l~va~~~~~~  234 (306)
T 2p4o_A          164 SESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-------TNIDDFAFDVEGNLYGATHIYNS  234 (306)
T ss_dssp             TTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-------CCCSSEEEBTTCCEEEECBTTCC
T ss_pred             ccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-------CCCCCeEECCCCCEEEEeCCCCe
Confidence            01111234555  88887654 455678899999875 322111111111       14578999999987776 35788


Q ss_pred             EEEEecCCceEee--ecccCCCCCCeeEEEEC---CCCCEEEEEEcCC
Q 001295          967 LAIFETTKLECVK--QWVPRESSAPITHATFS---CDSQLVYACFLDA 1009 (1106)
Q Consensus       967 v~i~d~~~~~~~~--~~~~~~h~~~v~~l~~s---~d~~~l~t~s~Dg 1009 (1106)
                      |.++|.. ++...  .+.  ......++++|.   ||++.|+.++..+
T Consensus       235 V~~~~~~-G~~~~~~~~~--~~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          235 VVRIAPD-RSTTIIAQAE--QGVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             EEEECTT-CCEEEEECGG--GTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             EEEECCC-CCEEEEeecc--cccCCceEEEEecccCCCCEEEEECCCC
Confidence            9999976 55422  333  224578999998   8988877666543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.37  E-value=0.0013  Score=70.92  Aligned_cols=277  Identities=12%  Similarity=0.098  Sum_probs=154.1

Q ss_pred             ccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCC
Q 001295          743 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND  822 (1106)
Q Consensus       743 ~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~  822 (1106)
                      ...+.++.|.+++..++ ++..|.|.. ..+.+              +-|....       .........+.++.+++ +
T Consensus        35 ~~~~~~v~~~~~~~~~~-~G~~g~i~~-s~DgG--------------~tW~~~~-------~~~~~~~~~~~~i~~~~-~   90 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWL-VGVNATLME-TRDGG--------------QTWEPRT-------LVLDHSDYRFNSVSFQG-N   90 (327)
T ss_dssp             SSCEEEEEESSSSCEEE-EETTTEEEE-ESSTT--------------SSCEECC-------CCCSCCCCEEEEEEEET-T
T ss_pred             CCcEEEEEECCCCcEEE-EcCCCeEEE-eCCCC--------------CCCeECC-------CCCCCCCccEEEEEecC-C
Confidence            34688899987777666 556665432 11110              0121110       00001244688899986 5


Q ss_pred             CEEEEEeCCeEEEEEcCCCceeeeec---CCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEE-EecCcccCee
Q 001295          823 SYVMSASGGKISLFNMMTFKTMATFM---PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS-KLKGHSKRIT  898 (1106)
Q Consensus       823 ~~l~~~sdg~i~vwd~~~~~~~~~~~---~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~-~l~~h~~~V~  898 (1106)
                      ..++++..+.|.. ....++.-....   .+...+..+.+.+ ++.+++++ .+|.|+. ..+.|+.-. ...++...+.
T Consensus        91 ~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~  166 (327)
T 2xbg_A           91 EGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMR  166 (327)
T ss_dssp             EEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEE
T ss_pred             eEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEEC-CCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceE
Confidence            5566665775543 333333322222   2334578888877 67777665 4565432 112232221 2234556789


Q ss_pred             EEEEecCCCEEEEEcCCCcEEEEeC--CCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCce
Q 001295          899 GLAFSHALNVLVSSGADSQLCVWSS--DGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLE  976 (1106)
Q Consensus       899 ~l~~s~d~~~l~s~s~Dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~  976 (1106)
                      ++++.+++.+++.+...+..+-+|-  .+.+     .+...  .   ...+..++++++++.++++.++.+++.+...++
T Consensus       167 ~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~-----~~~~~--~---~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~  236 (327)
T 2xbg_A          167 NLNRSPSGEYVAVSSRGSFYSTWEPGQTAWE-----PHNRT--T---SRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSE  236 (327)
T ss_dssp             EEEECTTSCEEEEETTSSEEEEECTTCSSCE-----EEECC--S---SSCEEEEEECTTSCEEEEETTTEEEEEETTEEE
T ss_pred             EEEEcCCCcEEEEECCCcEEEEeCCCCCcee-----ECCCC--C---CCccceeEECCCCCEEEEeCCceEEEecCCCCC
Confidence            9999999988877755443444442  2221     12111  1   135678899999998888888888776533344


Q ss_pred             EeeecccC--CCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCE
Q 001295          977 CVKQWVPR--ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNE 1054 (1106)
Q Consensus       977 ~~~~~~~~--~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~ 1054 (1106)
                      .-..+...  .+...+.++++.+++..++++ .+|.| .+..+.|+.-..+......+     ..++  .+.|.+  +..
T Consensus       237 tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~-----~~~~--~v~~~~--~~~  305 (327)
T 2xbg_A          237 NWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVP-----SNFY--KILFFS--PDQ  305 (327)
T ss_dssp             EECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSS-----SCCC--EEEEEE--TTE
T ss_pred             eeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCC-----CCeE--EEEEEC--CCc
Confidence            33322211  123468999999988877765 47777 35566665444333110111     1245  677764  456


Q ss_pred             EEEEeCCCcEEEEe
Q 001295         1055 FALGLSDGGVHVFE 1068 (1106)
Q Consensus      1055 l~t~~~Dg~v~vW~ 1068 (1106)
                      +++++.+|.|.-++
T Consensus       306 ~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          306 GFILGQKGILLRYV  319 (327)
T ss_dssp             EEEECSTTEEEEEC
T ss_pred             eEEEcCCceEEEEc
Confidence            77778899776655

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.36  E-value=4.4e-05  Score=93.12  Aligned_cols=159  Identities=12%  Similarity=0.095  Sum_probs=95.3

Q ss_pred             CcEEEEEe-cCCCeEEEEEeccC----cEEEEecCCc-ceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCC
Q 001295          352 SPMSMDFH-PVQQTLLLVGTNVG----DIGLWEVGSR-ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  425 (1106)
Q Consensus       352 ~v~~~~~s-p~g~~llatg~~dg----~i~iwd~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~  425 (1106)
                      .+...+|| |||++|+.+.+.+|    +|+++|+.++ +.+.. .                 +   ......++|||||+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~-----------------~---~~~~~~~~WspDg~  233 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-K-----------------V---SGTNGEIVWGPDHT  233 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-C-----------------E---EEECSCCEECSSTT
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-c-----------------c---cCceeeEEEecCCC
Confidence            67889999 99997555554444    4999999988 63211 0                 1   11234688999999


Q ss_pred             EEEEEeCC-----CeEEEEEccCCceeeeeeeec-cccCCeeEEEEcCCCCceEEEEec-CCCcEEEEeCCCCc-ee--E
Q 001295          426 LFGVAYSR-----HIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCG-DDKTIKVWDATNGA-KQ--Y  495 (1106)
Q Consensus       426 ~las~~~d-----~~v~iwd~~~~~~~~~~~~l~-~h~~~V~~~~~s~d~~~~~l~s~~-~d~~i~iwd~~~~~-~~--~  495 (1106)
                      .|+....|     ..|.++++.++..... ..+. .+......+.|+|||+.+++.+.. ....|+++|+.++. ..  .
T Consensus       234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~-lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~  312 (751)
T 2xe4_A          234 SLFYVTKDETLRENKVWRHVMGKLQSEDV-CLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLE  312 (751)
T ss_dssp             EEEEEEECTTCCEEEEEEEETTSCGGGCE-EEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEE
T ss_pred             EEEEEEECCCCCCCEEEEEECCCCchhcE-EEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeE
Confidence            99887765     3688888887642211 1222 223456788999999964333322 24568888988762 22  3


Q ss_pred             EE-eccCCCeEEEeccccCCceEEEEEecC----CeEEEEeCCC
Q 001295          496 IF-EGHEAPVYSVCPHHKENIQFIFSTALD----GKIKAWLYDN  534 (1106)
Q Consensus       496 ~~-~~h~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~  534 (1106)
                      .+ .+......++.|+.  ++.+++....+    ..|..+|+.+
T Consensus       313 ~l~~~~~~~~~s~~~~~--g~~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          313 IVRPREKGVRYDVQMHG--TSHLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             ESSCCCTTCCEEEEEET--TTEEEEEECTTTCTTCEEEEEETTS
T ss_pred             EeecCCCCceEEEeeee--CCEEEEEeCCCCCCCcEEEEEcCCC
Confidence            33 33344555554322  22444444443    3566666654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.33  E-value=0.00028  Score=71.77  Aligned_cols=217  Identities=11%  Similarity=0.109  Sum_probs=133.3

Q ss_pred             eecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecC-cccCeeEEEEecCCCEEEEEcCCCcEEEEeCC
Q 001295          846 TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG-HSKRITGLAFSHALNVLVSSGADSQLCVWSSD  924 (1106)
Q Consensus       846 ~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~-h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~  924 (1106)
                      .+.+-...+..++++|+++.++++...++.|...|.. ++.++.+.- -....-.|++.+++.++++.-.++.+.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            3455556899999999666777888899999999987 888777632 12457788999999887777677889999887


Q ss_pred             Cccccc-ceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeEEEEecCC---c---eEeee--cccCCCCCCeeEEE
Q 001295          925 GWEKQK-NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK---L---ECVKQ--WVPRESSAPITHAT  994 (1106)
Q Consensus       925 ~~~~~~-~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v~i~d~~~---~---~~~~~--~~~~~h~~~v~~l~  994 (1106)
                      ...... .......-+....+.....++|+|+++.|.++ ......+|.+..   .   .....  +....+...+.+++
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~  179 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE  179 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence            644211 11111111122334567899999998766664 333344444431   1   11111  11112345678999


Q ss_pred             ECCCCCE-EEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEE
Q 001295          995 FSCDSQL-VYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1067 (1106)
Q Consensus       995 ~s~d~~~-l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW 1067 (1106)
                      +.|.... ++.......|.++|.. |+.+..+....-. ++-......+-.|+|.+ +|++.++ ++-+.++++
T Consensus       180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~-~~l~~~~~qpEGia~d~-~G~lyIv-sE~n~~y~f  249 (255)
T 3qqz_A          180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGS-RGLSHNIKQAEGVAMDA-SGNIYIV-SEPNRFYRF  249 (255)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTG-GGCSSCCCSEEEEEECT-TCCEEEE-ETTTEEEEE
T ss_pred             EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCcc-CCcccccCCCCeeEECC-CCCEEEE-cCCceEEEE
Confidence            9996554 5555566789999966 5566666522110 00001113456899999 6875555 655544444

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.29  E-value=4.8e-05  Score=92.78  Aligned_cols=193  Identities=12%  Similarity=0.063  Sum_probs=110.0

Q ss_pred             CeeEEEEe-cCCCEEEEEe--CC----eEEEEEcCCC-ceeee-ecCCCCCeeEEEEecCCCceEEEeeCC-----CcEE
Q 001295          812 AVPCFALS-KNDSYVMSAS--GG----KISLFNMMTF-KTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDD-----SSIQ  877 (1106)
Q Consensus       812 ~v~~l~~s-~~~~~l~~~s--dg----~i~vwd~~~~-~~~~~-~~~~~~~v~~l~~s~~d~~~la~g~~d-----g~v~  877 (1106)
                      .+...+|| |||++||.+.  +|    +|+++|+.++ +.+.. +.   .....++|+| |++.|+....|     ..|+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~Wsp-Dg~~l~y~~~d~~~~~~~v~  250 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGP-DHTSLFYVTKDETLRENKVW  250 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECS-STTEEEEEEECTTCCEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEec-CCCEEEEEEECCCCCCCEEE
Confidence            57789999 9999999775  23    4999999988 63211 11   1235688999 77767666654     3688


Q ss_pred             EEEeecceE--EEEec-CcccCeeEEEEecCCCEEEEEcC---CCcEEEEeCCCcccccceeecccCCCCCCCCCCceEE
Q 001295          878 IYNVRVDEV--KSKLK-GHSKRITGLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ  951 (1106)
Q Consensus       878 iwd~~~~~~--~~~l~-~h~~~V~~l~~s~d~~~l~s~s~---Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  951 (1106)
                      ++++.++..  ...+. .+.....++.|||||++|+..+.   ...|.++|+.++.... ....+..+..   .....+.
T Consensus       251 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~-~~~~l~~~~~---~~~~s~~  326 (751)
T 2xe4_A          251 RHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHN-TLEIVRPREK---GVRYDVQ  326 (751)
T ss_dssp             EEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCC-CEEESSCCCT---TCCEEEE
T ss_pred             EEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCc-eeEEeecCCC---CceEEEe
Confidence            888876531  22222 22334668899999999886653   3458888887752111 0011111111   1223343


Q ss_pred             EcCCCcEEEE-EeC-----CeEEEEecCCceEeee-cccCCCCC--CeeEEEECCCCCEEEEEEcCCe--EEEEEc
Q 001295          952 FHQDQIHFLV-VHE-----TQLAIFETTKLECVKQ-WVPRESSA--PITHATFSCDSQLVYACFLDAT--VCVFSA 1016 (1106)
Q Consensus       952 ~s~dg~~l~~-~~d-----~~v~i~d~~~~~~~~~-~~~~~h~~--~v~~l~~s~d~~~l~t~s~Dg~--i~vwd~ 1016 (1106)
                      |+. |..|+. +..     ..|..+|+.+...... +.  .|..  .+..+.+. .+.++++...|+.  |+++++
T Consensus       327 ~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li--~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          327 MHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLV--DHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             EET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEE--CCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred             eee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEE--CCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence            333 555444 432     2677788765322122 22  2222  45556654 3345566777886  445564

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.28  E-value=0.00054  Score=69.64  Aligned_cols=203  Identities=8%  Similarity=0.034  Sum_probs=127.1

Q ss_pred             CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEE
Q 001295          349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  428 (1106)
Q Consensus       349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  428 (1106)
                      -.+.+..++|+|++..|+++...++.|...|.. ++.+....                 +.+ ......|++.+++.+++
T Consensus        25 ~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-----------------l~g-~~D~EGIa~~~~g~~~v   85 (255)
T 3qqz_A           25 ITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-----------------LDF-VKDLETIEYIGDNQFVI   85 (255)
T ss_dssp             CCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-----------------CSS-CSSEEEEEECSTTEEEE
T ss_pred             cccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-----------------cCC-CCChHHeEEeCCCEEEE
Confidence            446899999999988778888888999999988 77665422                 222 24577889999998777


Q ss_pred             EEeCCCeEEEEEccCCceee--eeeee----ccccCCeeEEEEcCCCCceEEEEecCCC-cEEEEeC-CCCceeEEEe--
Q 001295          429 VAYSRHIVQIYSYHGGDEVR--QHLEI----DAHVGGVNDIAFSHPNKQLCVITCGDDK-TIKVWDA-TNGAKQYIFE--  498 (1106)
Q Consensus       429 s~~~d~~v~iwd~~~~~~~~--~~~~l----~~h~~~V~~~~~s~d~~~~~l~s~~~d~-~i~iwd~-~~~~~~~~~~--  498 (1106)
                      +.-.++.+.++++.....+.  ....+    .........++|+|+++.+ +++...+. .|..|+- ..+..+..+.  
T Consensus        86 s~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L-~va~E~~p~~i~~~~g~~~~~~l~i~~~~  164 (255)
T 3qqz_A           86 SDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTF-WFFKEKNPIEVYKVNGLLSSNELHISKDK  164 (255)
T ss_dssp             EETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEE-EEEEESSSEEEEEEESTTCSSCCEEEECH
T ss_pred             EECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEE-EEEECcCCceEEEEcccccCCceeeecch
Confidence            76567889999887654322  11111    1234567899999999853 33333332 4555551 1222233332  


Q ss_pred             -----ccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCC---------CeeEEEEEecCCCeEEEee
Q 001295          499 -----GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG---------RWCTTMAYSADGTRTYQGF  564 (1106)
Q Consensus       499 -----~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~~~~~~  564 (1106)
                           .+...+.++++++.. +++++.....+.+..+|... ..+..+....         .....|+            
T Consensus       165 ~~~~~~~~~d~S~l~~dp~t-g~lliLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia------------  230 (255)
T 3qqz_A          165 ALQRQFTLDDVSGAEFNQQK-NTLLVLSHESRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVA------------  230 (255)
T ss_dssp             HHHHTCCSSCCCEEEEETTT-TEEEEEETTTTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEE------------
T ss_pred             hhccccccCCceeEEEcCCC-CeEEEEECCCCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeE------------
Confidence                 123456788888754 57888888888999998663 3333333221         1334444            


Q ss_pred             eccceeEEEEcCCCCEEEEEECCCeEEEEEC
Q 001295          565 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM  595 (1106)
Q Consensus       565 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~  595 (1106)
                               ++++|+ ++..++.+.++.+..
T Consensus       231 ---------~d~~G~-lyIvsE~n~~y~f~~  251 (255)
T 3qqz_A          231 ---------MDASGN-IYIVSEPNRFYRFTP  251 (255)
T ss_dssp             ---------ECTTCC-EEEEETTTEEEEEEC
T ss_pred             ---------ECCCCC-EEEEcCCceEEEEEe
Confidence                     445544 666688887777754

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=98.24  E-value=0.026  Score=69.02  Aligned_cols=494  Identities=8%  Similarity=0.030  Sum_probs=251.1

Q ss_pred             CcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCC
Q 001295          412 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG  491 (1106)
Q Consensus       412 ~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~  491 (1106)
                      ...|.++.-..+|.+ -.|+.+| +..||-..-+.....  -......|.++....+|.   |..|+.+| +..+|..+.
T Consensus        21 ~n~V~~I~qD~~G~l-WigT~~G-L~ryDG~~~~~~~~~--~~~~~~~i~~i~~d~~g~---lWigT~~G-l~~yd~~~~   92 (758)
T 3ott_A           21 ASVVSCFLQDSEGLI-WIGSNKG-LFSYDGYSTQQHFTY--GENNNTRIYCGVIIDNTY---LYMGTDNG-ILVYNYRAD   92 (758)
T ss_dssp             CCCEEEEEECTTSCE-EEEESSC-EEEECSSCEEECSCT--TSTTSSCEEEEEEETTTE---EEEEETTE-EEEEETTTT
T ss_pred             cceEEEEEECCCCCE-EEEECCC-ccccCCCceEEEEcc--CCCCCceEEEEEEcCCCc---EEEEeCCC-eEEEeCCCC
Confidence            457999998888854 4566777 556663221111100  011234688888777765   44444454 789998776


Q ss_pred             ceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEee-----CCCCeeEEEEEecCCCeEEEeeec
Q 001295          492 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-----APGRWCTTMAYSADGTRTYQGFRK  566 (1106)
Q Consensus       492 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~~~~~~~~  566 (1106)
                      +...........|.++..   .++ .|..++.+ -+..+|..+... ..+.     .....|.+                
T Consensus        93 ~f~~~~~~~~~~i~~i~~---~~g-~lWigt~~-Gl~~~~~~~~~~-~~~~~~~~~l~~~~i~~----------------  150 (758)
T 3ott_A           93 RYEQPETDFPTDVRTMAL---QGD-TLWLGALN-GLYTYQLQSRKL-TSFDTRRNGLPNNTIYS----------------  150 (758)
T ss_dssp             EECCCSCCCCSCEEEEEE---ETT-EEEEEETT-EEEEEETTTCCE-EEECHHHHCCSCSCEEE----------------
T ss_pred             EEECcccCCCceEEEEEe---cCC-cEEEEcCC-cceeEeCCCCeE-EEeccCCCCcCCCeEEE----------------
Confidence            433211112234666642   233 35555555 577788765332 2220     11122333                


Q ss_pred             cceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCC----CCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295          567 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG----GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       567 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                           +....++. +..+..+ -|..++..+++... +....    ....|.++....++..|..|+. +.+..++..++
T Consensus       151 -----i~~d~~g~-lWigt~~-Gl~~~~~~~~~~~~-~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~  221 (758)
T 3ott_A          151 -----IIRTKDNQ-IYVGTYN-GLCRYIPSNGKFEG-IPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTG  221 (758)
T ss_dssp             -----EEECTTCC-EEEEETT-EEEEEETTTTEEEE-ECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTT
T ss_pred             -----EEEcCCCC-EEEEeCC-CHhhCccCCCceEE-ecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCC
Confidence                 33444444 3344544 57788877665432 22111    1123667777776766555664 45777776543


Q ss_pred             chhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEe
Q 001295          643 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK  722 (1106)
Q Consensus       643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~  722 (1106)
                      . . ..+.                                                                        
T Consensus       222 ~-~-~~~~------------------------------------------------------------------------  227 (758)
T 3ott_A          222 Q-I-KQTE------------------------------------------------------------------------  227 (758)
T ss_dssp             E-E-EEEE------------------------------------------------------------------------
T ss_pred             e-E-Eecc------------------------------------------------------------------------
Confidence            1 0 0000                                                                        


Q ss_pred             cCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCcccc
Q 001295          723 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN  802 (1106)
Q Consensus       723 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  802 (1106)
                                 .      .....|.++....+|...+. +.+ -+.+++.....+.            .+......... 
T Consensus       228 -----------~------l~~~~i~~i~~d~~g~lWig-T~~-Gl~~~~~~~~~~~------------~~~~~~~~~~~-  275 (758)
T 3ott_A          228 -----------A------FHNNSIKSLALDGNGDLLAG-TDN-GLYVYHNDTTPLQ------------HIIHDSRNIQS-  275 (758)
T ss_dssp             -----------E------EEEEEEEEEEECTTCCEEEE-ETT-EEEEECCTTSCCE------------EECCCTTCTTS-
T ss_pred             -----------C------CCCCeEEEEEEcCCCCEEEE-eCC-ceeEEecCCCcEE------------EEEcCCCCcCc-
Confidence                       0      01235777888888875554 444 4566654321110            00000000000 


Q ss_pred             ccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeee-----cCCCCCeeEEEEecCCCceEEEeeCCCcEE
Q 001295          803 DVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATF-----MPPPPAATFLAFHPQDNNIIAIGMDDSSIQ  877 (1106)
Q Consensus       803 ~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~-----~~~~~~v~~l~~s~~d~~~la~g~~dg~v~  877 (1106)
                       +    ....|.++....+|.+-+....| +.++.....-.....     ......|.++.-.. ++.+.+ |+.+| +.
T Consensus       276 -l----~~~~i~~i~~D~~g~lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~-~g~lWi-Gt~~G-l~  346 (758)
T 3ott_A          276 -L----TNNIIWNIFADQEHNIWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDS-KGFYWF-GGANG-LI  346 (758)
T ss_dssp             -C----SCSCEEEEEECTTCCEEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECT-TCCEEE-EETTE-EE
T ss_pred             -C----CcCeEEEEEEcCCCCEEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcC-CCCEEE-eeCCc-ce
Confidence             0    34568999988888766554455 544433211111110     11234688888776 565544 45555 55


Q ss_pred             EEEeecce--EEEEec-------CcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCc
Q 001295          878 IYNVRVDE--VKSKLK-------GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDT  948 (1106)
Q Consensus       878 iwd~~~~~--~~~~l~-------~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~  948 (1106)
                      .++..+++  ....+.       -....|.++.-..+|.+.+. +.+ -|..|+..+++.......  ..........|.
T Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWig-t~~-GL~~~~~~~~~~~~~~~~--~~~~~~~~~~v~  422 (758)
T 3ott_A          347 RFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIA-TDG-SINRYDYATRQFIHYNIV--DNTGTYNTNWTY  422 (758)
T ss_dssp             EESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEE-ETT-EEEEEETTTTEEEEEEEE--CCC--CBSSSEE
T ss_pred             eecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEE-eCC-cHhhcCcCCCcEEEeecC--CCcCCCCCceEE
Confidence            56544421  111121       01245888888888876553 344 588899877543211100  110000123567


Q ss_pred             eEEEcCCCcEEEEEeCCeEEEEecCCc------eEe--eec--ccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCC
Q 001295          949 RVQFHQDQIHFLVVHETQLAIFETTKL------ECV--KQW--VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1018 (1106)
Q Consensus       949 ~~~~s~dg~~l~~~~d~~v~i~d~~~~------~~~--~~~--~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~ 1018 (1106)
                      ++....+|++.+.+..+.+.++|..+.      ...  ..+  ...-....|.++...++|.+.+.++..+-|..+|..+
T Consensus       423 ~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~  502 (758)
T 3ott_A          423 YIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRT  502 (758)
T ss_dssp             EEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTT
T ss_pred             EEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCC
Confidence            788888888777666678888886531      111  111  1111134699999999998766333345588889888


Q ss_pred             ceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCC
Q 001295         1019 LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus      1019 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
                      ++......  ..+..   .  ..+.++.... +|.+.+ |+.. -|..++..+..
T Consensus       503 ~~~~~~~~--~~~~~---~--~~~~~i~~d~-~g~lWi-gt~~-Gl~~~~~~~~~  547 (758)
T 3ott_A          503 REVTKLFA--DELTG---E--KSPNYLLCDE-DGLLWV-GFHG-GVMRINPKDES  547 (758)
T ss_dssp             TEEEEECT--TTSCG---G--GCEEEEEECT-TSCEEE-EETT-EEEEECC--CC
T ss_pred             CceEEecC--CCcCC---C--cccceEEECC-CCCEEE-EecC-ceEEEecCCCc
Confidence            76553211  11110   1  1222455544 565554 4444 48888877655

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.21  E-value=0.00012  Score=87.92  Aligned_cols=238  Identities=11%  Similarity=-0.021  Sum_probs=129.8

Q ss_pred             CCeeEEEEecCCCEEEEEe--CCeEEEEEcCCCceeeeecCCCCC-eeEEEEecCCCceEEEee-CC-----CcEEEEEe
Q 001295          811 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPA-ATFLAFHPQDNNIIAIGM-DD-----SSIQIYNV  881 (1106)
Q Consensus       811 ~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~-v~~l~~s~~d~~~la~g~-~d-----g~v~iwd~  881 (1106)
                      ....++++..+++++++|+  ++.+.+||..+.+....-..+... -.++++.+ ++++++.|+ .+     ..+.+||.
T Consensus       243 ~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~  321 (656)
T 1k3i_A          243 MFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSP  321 (656)
T ss_dssp             CSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEET
T ss_pred             CccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEec-CCeEEEEeCcccCCcccccceEeCC
Confidence            3345678889999999998  468999998876543322212121 23455666 788999988 44     47999999


Q ss_pred             ecceEEEEe----cCcccCeeEEEEecCCCEEEEEcCCC---------cEEEEeCCCcccccceeecccCC---CCCCCC
Q 001295          882 RVDEVKSKL----KGHSKRITGLAFSHALNVLVSSGADS---------QLCVWSSDGWEKQKNRFLQIPTG---RTPTAQ  945 (1106)
Q Consensus       882 ~~~~~~~~l----~~h~~~V~~l~~s~d~~~l~s~s~Dg---------~i~vwd~~~~~~~~~~~~~~~~~---~~~~~~  945 (1106)
                      .+.+-...-    ......-....+..++..++.++.||         .+..||..+..-.  ........   ......
T Consensus       322 ~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~--~~~~~~~~~~~~~~~~~  399 (656)
T 1k3i_A          322 SSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV--KSAGKRQSNRGVAPDAM  399 (656)
T ss_dssp             TTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE--EEEEECEETTEECCCCB
T ss_pred             CCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCccee--ecCCccccccccCCCCC
Confidence            876532210    00000000011234555556665554         4677887764321  11111100   000001


Q ss_pred             CCceEEEcC-CCcEEEEE-eCC-----------eEEEEecCCceEeeecccCCCCCC-eeEEEECCCCCEEEEEEcC---
Q 001295          946 SDTRVQFHQ-DQIHFLVV-HET-----------QLAIFETTKLECVKQWVPRESSAP-ITHATFSCDSQLVYACFLD--- 1008 (1106)
Q Consensus       946 ~i~~~~~s~-dg~~l~~~-~d~-----------~v~i~d~~~~~~~~~~~~~~h~~~-v~~l~~s~d~~~l~t~s~D--- 1008 (1106)
                      .-.++.|.. +++.++.+ .++           .+.+||..+...........+... -.+++..|++++++.|+.+   
T Consensus       400 ~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~  479 (656)
T 1k3i_A          400 CGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGI  479 (656)
T ss_dssp             TCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCC
T ss_pred             CCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCc
Confidence            224455543 67777774 321           688889887665443201112222 3455677899999999865   


Q ss_pred             --------CeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeC
Q 001295         1009 --------ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS 1060 (1106)
Q Consensus      1009 --------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~ 1060 (1106)
                              ..+.+||..+.+-... .   .++...  . -. -.....| |+++++.|+.
T Consensus       480 ~~~~~~~~~~v~~ydp~t~~W~~~-~---~~~~~R--~-~h-s~a~ll~-dg~v~v~GG~  530 (656)
T 1k3i_A          480 PFEDSTPVFTPEIYVPEQDTFYKQ-N---PNSIVR--V-YH-SISLLLP-DGRVFNGGGG  530 (656)
T ss_dssp             TTCCCSBCCCCEEEEGGGTEEEEC-C---CCSSCC--C-TT-EEEEECT-TSCEEEEECC
T ss_pred             CcCCCCcccceEEEcCCCCceeec-C---CCCCcc--c-cc-cHhhcCC-CcEEEecCCC
Confidence                    4689999988765432 1   111110  0 11 1233446 7899999985

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.20  E-value=0.00091  Score=71.83  Aligned_cols=207  Identities=6%  Similarity=-0.033  Sum_probs=129.9

Q ss_pred             CCCeeEEEEecCCCEEEEEe--CCeEEEEEcCC----CceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeec
Q 001295          810 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMT----FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV  883 (1106)
Q Consensus       810 ~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~----~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~  883 (1106)
                      ...+..++|++.+..|..+.  ++.|..+++.+    ......+.........+++.+.+++++++-..++.|.++++..
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g  108 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  108 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence            44578999999877777666  58899999876    2222223323345688999874566666666788999999875


Q ss_pred             ceEEEEecCcccCeeEEEEecCCCEEEEEcCC--CcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE
Q 001295          884 DEVKSKLKGHSKRITGLAFSHALNVLVSSGAD--SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV  961 (1106)
Q Consensus       884 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~  961 (1106)
                      ......+........++++.|++..|..+...  +.|...+++....  ..... ...     .....+++++++..|..
T Consensus       109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~--~~~~~-~~~-----~~P~gla~d~~~~~lY~  180 (316)
T 1ijq_A          109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI--YSLVT-ENI-----QWPNGITLDLLSGRLYW  180 (316)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE--EEEEC-SSC-----SCEEEEEEETTTTEEEE
T ss_pred             CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe--EEEEE-CCC-----CCceEEEEeccCCEEEE
Confidence            43333333334567899999977766655543  6788887765221  11111 111     24578999998777766


Q ss_pred             E--eCCeEEEEecCCceEeeeccc-CCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295          962 V--HETQLAIFETTKLECVKQWVP-RESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus       962 ~--~d~~v~i~d~~~~~~~~~~~~-~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
                      +  ..+.|..+|+..... ..+.. .........|++. .+.++++-...+.|..++..+|+.+..+.
T Consensus       181 ~D~~~~~I~~~d~dg~~~-~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~  246 (316)
T 1ijq_A          181 VDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA  246 (316)
T ss_dssp             EETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             EECCCCeEEEEecCCCce-EEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence            4  557899999875332 22221 1123456788884 35555566667889999988887666554

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.19  E-value=0.00087  Score=73.06  Aligned_cols=238  Identities=12%  Similarity=0.042  Sum_probs=148.4

Q ss_pred             CeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEec
Q 001295          812 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK  891 (1106)
Q Consensus       812 ~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~  891 (1106)
                      ..+|.+..+ ..+|+.+....|+..++........+. ....+..++|++.++.++.+-...+.|+.+++..+.....+.
T Consensus        35 ~~~C~~~~~-~~~ll~~~~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~  112 (349)
T 3v64_C           35 RRSCKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS  112 (349)
T ss_dssp             SSCEEESSS-CCEEEEECBSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred             CCccccccc-CceeEeecccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe
Confidence            345555555 446666666678888887655444343 334588999998566666666677899999987655433333


Q ss_pred             CcccCeeEEEEecCCCE-EEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE--eC-CeE
Q 001295          892 GHSKRITGLAFSHALNV-LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE-TQL  967 (1106)
Q Consensus       892 ~h~~~V~~l~~s~d~~~-l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~--~d-~~v  967 (1106)
                      .......++++.+.+.. .++-...+.|.+.+++....  ....  ..+.    .....++++|.+..|..+  .. +.|
T Consensus       113 ~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~--~~l~--~~~l----~~P~~iavdp~~g~ly~td~~~~~~I  184 (349)
T 3v64_C          113 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR--KVLL--WQSL----EKPRAIALHPMEGTIYWTDWGNTPRI  184 (349)
T ss_dssp             SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEE--CTTC----SCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred             CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce--EEEE--eCCC----CCcceEEEecCcCeEEEeccCCCCEE
Confidence            33345678999975554 45556678899999876321  1111  1111    245889999976665553  34 778


Q ss_pred             EEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEE-cCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEE
Q 001295          968 AIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIA 1046 (1106)
Q Consensus       968 ~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s-~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 1046 (1106)
                      ..+++...... .+.. ..-.....|+++|++..|+.+. ..+.|..+|++.......+...          .-.|..++
T Consensus       185 ~r~~~dG~~~~-~~~~-~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~----------~~~P~gia  252 (349)
T 3v64_C          185 EASSMDGSGRR-IIAD-THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG----------LPHPFAIT  252 (349)
T ss_dssp             EEEETTSCSCE-ESCC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS----------CSSEEEEE
T ss_pred             EEEeCCCCCcE-EEEE-CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC----------CCCceEEE
Confidence            88888654332 2221 2244678999998777766554 4578999998754333222211          12355677


Q ss_pred             EeCCCCCEEEEEeCCCcEEEEeecCCC
Q 001295         1047 AHPQEPNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus      1047 ~~~~d~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
                      +.  ++.++++-...+.|...+..+++
T Consensus       253 v~--~~~ly~td~~~~~V~~~~~~~G~  277 (349)
T 3v64_C          253 VF--EDSLYWTDWHTKSINSANKFTGK  277 (349)
T ss_dssp             EE--TTEEEEEETTTTEEEEEETTTCC
T ss_pred             EE--CCEEEEecCCCCeEEEEEccCCC
Confidence            74  35667777677888888765665

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.18  E-value=0.0015  Score=71.20  Aligned_cols=205  Identities=10%  Similarity=-0.002  Sum_probs=132.5

Q ss_pred             CCeeEEEEecCCCEEEEEe--CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEE
Q 001295          811 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS  888 (1106)
Q Consensus       811 ~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~  888 (1106)
                      ..+..++|++.+..|....  .+.|..+++........+.........+++.+.+++++++-...+.|.+.++.......
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~  152 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV  152 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence            4478999998777777665  68899999887654443333334567899997556666666677899999987543333


Q ss_pred             EecCcccCeeEEEEecCCCEEEEEc-CC-CcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE--eC
Q 001295          889 KLKGHSKRITGLAFSHALNVLVSSG-AD-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE  964 (1106)
Q Consensus       889 ~l~~h~~~V~~l~~s~d~~~l~s~s-~D-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~--~d  964 (1106)
                      .+........++++.|.+..|..+. .. +.|...+++.....   .+ ...+    ......++++|++..|..+  ..
T Consensus       153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~---~~-~~~~----~~~PnGla~d~~~~~lY~aD~~~  224 (349)
T 3v64_C          153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR---II-ADTH----LFWPNGLTIDYAGRRMYWVDAKH  224 (349)
T ss_dssp             EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE---ES-CCSS----CSCEEEEEEETTTTEEEEEETTT
T ss_pred             EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcE---EE-EECC----CCCcceEEEeCCCCEEEEEECCC
Confidence            3333445678999999766655544 34 67888887653211   11 1111    1245789999877766664  56


Q ss_pred             CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295          965 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus       965 ~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
                      +.|..+|+........+.  ........|++ ..+...++-...+.|..++..+|+.+..+.
T Consensus       225 ~~I~~~~~dG~~~~~~~~--~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~  283 (349)
T 3v64_C          225 HVIERANLDGSHRKAVIS--QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR  283 (349)
T ss_dssp             TEEEEEETTSCSCEEEEC--SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CEEEEEeCCCCceEEEEe--CCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence            789999987543322222  22446678888 345555555567888888877777666554

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.16  E-value=0.00051  Score=77.16  Aligned_cols=249  Identities=7%  Similarity=0.015  Sum_probs=146.2

Q ss_pred             CeeEEEEecC--CCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCC---C-cEEEEEeecc
Q 001295          812 AVPCFALSKN--DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD---S-SIQIYNVRVD  884 (1106)
Q Consensus       812 ~v~~l~~s~~--~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~d---g-~v~iwd~~~~  884 (1106)
                      ....++++|+  +..|.++. .+.|+.+|..++..... .........+++++ +++++++....   . .+..++...+
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~  217 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASG  217 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCC
Confidence            4578999984  45555555 58899999987665443 33455689999999 77755543321   1 1333332221


Q ss_pred             eE-EEEecCcccCeeEEEEec-CCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE
Q 001295          885 EV-KSKLKGHSKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV  962 (1106)
Q Consensus       885 ~~-~~~l~~h~~~V~~l~~s~-d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~  962 (1106)
                      .. ...+. .......+++.| +|.+.++-..++.|+.++..++.... .....  +..   .....++|+|+|++|.++
T Consensus       218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~-~~~~~--~~~---~~~~~ia~dpdG~~LYva  290 (433)
T 4hw6_A          218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTE-EEVMM--DTK---GSNFHIVWHPTGDWAYII  290 (433)
T ss_dssp             TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEE-EEEEC--SCC---SSCEEEEECTTSSEEEEE
T ss_pred             eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEE-EEecc--CCC---CCcccEEEeCCCCEEEEE
Confidence            11 01111 234456789999 67776666677889999987654311 11111  111   123469999999966664


Q ss_pred             --eCCeEEEEecC--CceEe--eecc----cCC---------CCCCeeEEEE---------CCCCCEEEEEEcCCeEEEE
Q 001295          963 --HETQLAIFETT--KLECV--KQWV----PRE---------SSAPITHATF---------SCDSQLVYACFLDATVCVF 1014 (1106)
Q Consensus       963 --~d~~v~i~d~~--~~~~~--~~~~----~~~---------h~~~v~~l~~---------s~d~~~l~t~s~Dg~i~vw 1014 (1106)
                        ..+.|+.++..  ++...  ..+.    ..+         .-.....+++         .++|.+.++-...+.|+.+
T Consensus       291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~  370 (433)
T 4hw6_A          291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL  370 (433)
T ss_dssp             ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred             eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence              56789998765  23211  1111    001         1224677999         7777777776677889999


Q ss_pred             EcCCceeEEeeCCCc----ccCCC---CCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeec
Q 001295         1015 SAANLKLRCRINPSA----YLPAG---VSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1070 (1106)
Q Consensus      1015 d~~~~~~~~~~~~~~----~~~~~---~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~ 1070 (1106)
                      +. +|..........    -...|   ....--.|..+++.|.++.++++-..++.|+.++++
T Consensus       371 ~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          371 TP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             CT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             CC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            84 565443332111    00001   001123477999996578888877778888888764

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.15  E-value=0.00051  Score=77.25  Aligned_cols=247  Identities=9%  Similarity=0.040  Sum_probs=143.6

Q ss_pred             CeeEEEEec-CCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeC-CC----cEEEEEeecc
Q 001295          812 AVPCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-DS----SIQIYNVRVD  884 (1106)
Q Consensus       812 ~v~~l~~s~-~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~-dg----~v~iwd~~~~  884 (1106)
                      ....++++| ++..|.++. .+.|+.+|..++.... +.........++|++ ++++|.++.. ++    .+.+++ ..+
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~-~~g  214 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILT-RES  214 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEE-GGG
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEe-CCC
Confidence            457899998 455666665 5789999998765443 333455688999999 7775554443 22    233344 333


Q ss_pred             eEE--EEecCcccCeeEEEEec-CCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE
Q 001295          885 EVK--SKLKGHSKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV  961 (1106)
Q Consensus       885 ~~~--~~l~~h~~~V~~l~~s~-d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~  961 (1106)
                      ...  ..+. ......+++++| +|.++++-..++.|..++..++...  ........     .....++|+|+|++|.+
T Consensus       215 ~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~--~~~~~~~~-----~~P~gia~~pdG~~lyv  286 (430)
T 3tc9_A          215 GFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT--PLFTIQDS-----GWEFHIQFHPSGNYAYI  286 (430)
T ss_dssp             TSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE--EEEECSSS-----SCCEEEEECTTSSEEEE
T ss_pred             ceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE--EEEEcCCC-----CcceeEEEcCCCCEEEE
Confidence            221  2222 123467889999 6777777777888999998864321  11111111     24578999999996666


Q ss_pred             E--eCCeEEEEecCC--ceE--eeeccc----CCC---------CCCee-EEEEC--------CCCCEEEEEEcCCeEEE
Q 001295          962 V--HETQLAIFETTK--LEC--VKQWVP----RES---------SAPIT-HATFS--------CDSQLVYACFLDATVCV 1013 (1106)
Q Consensus       962 ~--~d~~v~i~d~~~--~~~--~~~~~~----~~h---------~~~v~-~l~~s--------~d~~~l~t~s~Dg~i~v 1013 (1106)
                      +  ..+.|..++...  +..  +..+..    .+.         -.... .+++.        ++|.+.++-...+.|+.
T Consensus       287 ~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~  366 (430)
T 3tc9_A          287 VVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRI  366 (430)
T ss_dssp             EETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEE
T ss_pred             EECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEE
Confidence            4  567899887653  221  111110    010         11123 45553        34555565556678888


Q ss_pred             EEcCCceeEEeeCCCc--ccC--CC---CCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeec
Q 001295         1014 FSAANLKLRCRINPSA--YLP--AG---VSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1070 (1106)
Q Consensus      1014 wd~~~~~~~~~~~~~~--~~~--~~---~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~ 1070 (1106)
                      ++ .+|..........  +..  .|   ....--.|..+++.|+++.++++-..++.|+..+++
T Consensus       367 i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          367 LT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             EC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence            88 5565443332100  000  01   001112577999998556777777777788887764

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.13  E-value=0.00064  Score=75.34  Aligned_cols=206  Identities=10%  Similarity=-0.023  Sum_probs=133.7

Q ss_pred             CCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEE
Q 001295          810 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK  887 (1106)
Q Consensus       810 ~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~  887 (1106)
                      ...+..++|++.+..|....  .+.|..++.........+.........+++.+.+++++++-...+.|.+.++......
T Consensus       115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~  194 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK  194 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE
T ss_pred             CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE
Confidence            34578999998777777665  6889999988765444343333456788998745666666666778888887654333


Q ss_pred             EEecCcccCeeEEEEecCCCEEEEEcC-C-CcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE--e
Q 001295          888 SKLKGHSKRITGLAFSHALNVLVSSGA-D-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--H  963 (1106)
Q Consensus       888 ~~l~~h~~~V~~l~~s~d~~~l~s~s~-D-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~--~  963 (1106)
                      ..+.........|++.|++..|..+.. . +.|...+++....  .....  .+.    .....++++|++..|..+  .
T Consensus       195 ~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~--~~~~~--~~~----~~PnGlavd~~~~~lY~aD~~  266 (386)
T 3v65_B          195 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR--RIIAD--THL----FWPNGLTIDYAGRRMYWVDAK  266 (386)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC--EEEEC--SSC----SCEEEEEEEGGGTEEEEEETT
T ss_pred             EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc--EEEEE--CCC----CCeeeEEEeCCCCEEEEEECC
Confidence            333334456789999987776665543 3 5677777765321  11111  111    235789999877766664  5


Q ss_pred             CCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295          964 ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus       964 d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
                      .+.|..+|+........+.  ........|++ ..+.++++-...+.|..++..+|+.+..+.
T Consensus       267 ~~~I~~~d~dG~~~~~~~~--~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          267 HHVIERANLDGSHRKAVIS--QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             TTEEEEECTTSCSCEEEEC--SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CCEEEEEeCCCCeeEEEEE--CCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence            6789999987543322222  22446678888 345555666677889999977787776665

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.09  E-value=0.0018  Score=71.92  Aligned_cols=208  Identities=6%  Similarity=-0.045  Sum_probs=134.0

Q ss_pred             CCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCC----ceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeec
Q 001295          810 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMTF----KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV  883 (1106)
Q Consensus       810 ~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~----~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~  883 (1106)
                      ...+..++|++.+..|..+.  .+.|+.+++...    .....+.........+++.+.+++++++-...+.|.+.++..
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g  190 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  190 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence            45678999999877777776  588999998752    222333334456788999874566666666778999999876


Q ss_pred             ceEEEEecCcccCeeEEEEecCCCEEEEEcC--CCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE
Q 001295          884 DEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV  961 (1106)
Q Consensus       884 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~--Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~  961 (1106)
                      ......+........+|++.|.+.+|+.+..  .+.|...+++.....  ....  .+.    .....+++++++..|..
T Consensus       191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~--~~~~--~~l----~~P~glavd~~~~~lY~  262 (400)
T 3p5b_L          191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY--SLVT--ENI----QWPNGITLDLLSGRLYW  262 (400)
T ss_dssp             CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE--EEEC--SSC----SCEEEEEEETTTTEEEE
T ss_pred             CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE--EEEE--CCC----CceEEEEEEeCCCEEEE
Confidence            5444444434455789999997766665543  367888888763221  1111  111    24588999988777766


Q ss_pred             E--eCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295          962 V--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus       962 ~--~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
                      +  ..+.|..+|+....................|++. .+.++++-...+.|..+|..+|+.+..+.
T Consensus       263 aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~  328 (400)
T 3p5b_L          263 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA  328 (400)
T ss_dssp             EETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred             EECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence            4  5678999998754433222211223456677773 33455566667889999988887766654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.09  E-value=0.007  Score=65.19  Aligned_cols=193  Identities=12%  Similarity=0.045  Sum_probs=112.4

Q ss_pred             CCeeEEEEecCCCEEEEEeCCeEEEEEcCCCceee-eecCCCCCeeEEEEecCCCceEEEeeCCCcEEE-EEe--ecceE
Q 001295          811 EAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMA-TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQI-YNV--RVDEV  886 (1106)
Q Consensus       811 ~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~-~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~i-wd~--~~~~~  886 (1106)
                      ..+..+.+.+++..++++.+|.|.. ....++.-. ........+..+++.+ ++.+++++. +|.++. +|-  .+.+.
T Consensus       122 ~~~~~i~~~~~~~~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~-~G~~~~S~d~gG~tW~~  198 (327)
T 2xbg_A          122 GSPRLIKALGNGSAEMITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSP-SGEYVAVSS-RGSFYSTWEPGQTAWEP  198 (327)
T ss_dssp             SCEEEEEEEETTEEEEEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECT-TSCEEEEET-TSSEEEEECTTCSSCEE
T ss_pred             CCeEEEEEECCCCEEEEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcC-CCcEEEEEC-CCcEEEEeCCCCCceeE
Confidence            3467788888887777776665422 122232222 2234456789999999 788887765 455444 332  23333


Q ss_pred             EEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCe
Q 001295          887 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQ  966 (1106)
Q Consensus       887 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~  966 (1106)
                      +.  ......+..+++.+++..++. +.+|.+++++.+.++.  ...+...  .......+..+++.+++..++++.++.
T Consensus       199 ~~--~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~t--W~~~~~~--~~~~~~~~~~v~~~~~~~~~~~g~~g~  271 (327)
T 2xbg_A          199 HN--RTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSEN--WGELLSP--LRRNSVGFLDLAYRTPNEVWLAGGAGA  271 (327)
T ss_dssp             EE--CCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEE--ECCCBCT--TSSCCSCEEEEEESSSSCEEEEESTTC
T ss_pred             CC--CCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCe--eEeccCC--cccCCcceEEEEecCCCEEEEEeCCCe
Confidence            32  235567889999999876654 4578777764332221  1111111  000112467889999999888888887


Q ss_pred             EEEEecCCceEeeecccC-CCCCCeeEEEECCCCCEEEEEEcCCeEEEEE
Q 001295          967 LAIFETTKLECVKQWVPR-ESSAPITHATFSCDSQLVYACFLDATVCVFS 1015 (1106)
Q Consensus       967 v~i~d~~~~~~~~~~~~~-~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd 1015 (1106)
                      + .+..+.++.-..+... .+...+.++.|.+++. +++++.+|.|.-++
T Consensus       272 i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          272 L-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV  319 (327)
T ss_dssp             E-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred             E-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence            7 3444444432222211 2245788899986665 55556789877665

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.06  E-value=0.002  Score=71.22  Aligned_cols=215  Identities=10%  Similarity=-0.036  Sum_probs=130.0

Q ss_pred             eeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCC
Q 001295          345 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  424 (1106)
Q Consensus       345 ~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg  424 (1106)
                      ........+..++|++.+..|+.+-...+.|..++...+.....                   +.........+++.+.+
T Consensus       110 ~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~-------------------~~~~~~~p~glavd~~~  170 (386)
T 3v65_B          110 LLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV-------------------VSTGLESPGGLAVDWVH  170 (386)
T ss_dssp             EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEE-------------------ECSSCSCCCCEEEETTT
T ss_pred             EEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEE-------------------EeCCCCCccEEEEEeCC
Confidence            33344567899999987776777766778999999886543221                   11112245678898855


Q ss_pred             CEE-EEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCC-CcEEEEeCCCCceeEEEeccCC
Q 001295          425 SLF-GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD-KTIKVWDATNGAKQYIFEGHEA  502 (1106)
Q Consensus       425 ~~l-as~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~h~~  502 (1106)
                      ..| ++-...+.|.+.++++.....   .+.........+++.|.+.. ++++-... +.|...++..............
T Consensus       171 g~lY~~d~~~~~I~~~~~dg~~~~~---l~~~~l~~P~giavdp~~g~-ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~  246 (386)
T 3v65_B          171 DKLYWTDSGTSRIEVANLDGAHRKV---LLWQSLEKPRAIALHPMEGT-IYWTDWGNTPRIEASSMDGSGRRIIADTHLF  246 (386)
T ss_dssp             TEEEEEETTTTEEEECBTTSCSCEE---EECSSCSCEEEEEEETTTTE-EEEEECSSSCEEEEEETTSCSCEEEECSSCS
T ss_pred             CeEEEEcCCCCeEEEEeCCCCceEE---eecCCCCCCcEEEEEcCCCe-EEEeccCCCCEEEEEeCCCCCcEEEEECCCC
Confidence            554 444556788888887643221   12233356789999998775 34444444 7888888654333333333344


Q ss_pred             CeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEE
Q 001295          503 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  582 (1106)
Q Consensus       503 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~  582 (1106)
                      ....+++++.. +.+.++-+..+.|..+|++.......+.........+++.                      .+..++
T Consensus       247 ~PnGlavd~~~-~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~----------------------~~~ly~  303 (386)
T 3v65_B          247 WPNGLTIDYAG-RRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF----------------------EDSLYW  303 (386)
T ss_dssp             CEEEEEEEGGG-TEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE----------------------TTEEEE
T ss_pred             CeeeEEEeCCC-CEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE----------------------CCEEEE
Confidence            57788886543 3566666677889999887533332222222233344441                      122344


Q ss_pred             EEECCCeEEEEECCCcceeEEEc
Q 001295          583 AAGDDFSIKFWDMDSVQLLTSID  605 (1106)
Q Consensus       583 ~~~~d~~i~iwd~~~~~~~~~~~  605 (1106)
                      +....+.|..++..+|+.+..+.
T Consensus       304 td~~~~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          304 TDWHTKSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             EETTTTEEEEEETTTCCSCEEEE
T ss_pred             eeCCCCeEEEEECCCCcceEEEc
Confidence            45567788888876777666664

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.05  E-value=0.0027  Score=70.51  Aligned_cols=230  Identities=9%  Similarity=0.052  Sum_probs=145.2

Q ss_pred             CEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecc----eEEEEecCcccCee
Q 001295          823 SYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD----EVKSKLKGHSKRIT  898 (1106)
Q Consensus       823 ~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~----~~~~~l~~h~~~V~  898 (1106)
                      .+|+.+....|+..++.......... ....+..++|++.++.++.+-...+.|+.+++...    .....+........
T Consensus        84 ~~ll~~~~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~  162 (400)
T 3p5b_L           84 AYLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD  162 (400)
T ss_dssp             CEEEEEETTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred             ceeEEeccceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence            46666667889999998765444443 45578999999855666666566788999988652    22233333445678


Q ss_pred             EEEEecC-CCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEe---CCeEEEEecCC
Q 001295          899 GLAFSHA-LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH---ETQLAIFETTK  974 (1106)
Q Consensus       899 ~l~~s~d-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~---d~~v~i~d~~~  974 (1106)
                      .|++.+. +.+.++-...+.|.+.+++....  ...+.  .+.    .....+++.|.+.+|..+.   .+.|...++..
T Consensus       163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~--~~l~~--~~~----~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG  234 (400)
T 3p5b_L          163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKR--KTLFR--ENG----SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG  234 (400)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECTTTCSE--EEEEE--CSS----CCEEEEEEETTTTEEEEEECSSSCCEEEEETTS
T ss_pred             cEEEEecCCceEEEECCCCeEEEEeCCCCce--EEEEe--CCC----CCcceEEEecccCeEEEEeCCCCCEEEEEeCCC
Confidence            8999874 44555556678899999876432  11111  111    2458999999766665542   36788888875


Q ss_pred             ceEeeecccCCCCCCeeEEEECCCCCEEEEEE-cCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCC
Q 001295          975 LECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN 1053 (1106)
Q Consensus       975 ~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s-~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~ 1053 (1106)
                      ........  ..-.....|++++++..|+.+. ..+.|..+|++.......+...        ...-.|.+++..  .+.
T Consensus       235 ~~~~~~~~--~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~--------~~l~~P~gl~v~--~~~  302 (400)
T 3p5b_L          235 VDIYSLVT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE--------KRLAHPFSLAVF--EDK  302 (400)
T ss_dssp             CSCEEEEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECS--------STTSSEEEEEEE--TTE
T ss_pred             CccEEEEE--CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCC--------CCCCCCEEEEEe--CCE
Confidence            43322222  2245789999999888776664 4578999998754433222210        111235567764  356


Q ss_pred             EEEEEeCCCcEEEEeecCCC
Q 001295         1054 EFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus      1054 ~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
                      ++++-...+.|..++..+++
T Consensus       303 lywtd~~~~~V~~~~~~~G~  322 (400)
T 3p5b_L          303 VFWTDIINEAIFSANRLTGS  322 (400)
T ss_dssp             EEEEESSSCSEEEEESSSCC
T ss_pred             EEEecCCCCeEEEEEcCCCC
Confidence            77777777889988877776

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.04  E-value=0.0077  Score=64.47  Aligned_cols=224  Identities=10%  Similarity=0.025  Sum_probs=127.5

Q ss_pred             cCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEE-eCCCeEEEEEccCC---cee
Q 001295          372 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA-YSRHIVQIYSYHGG---DEV  447 (1106)
Q Consensus       372 dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-~~d~~v~iwd~~~~---~~~  447 (1106)
                      ...|+..|+.+.+....                   +. .-.....++|++++..|..+ ..++.|..+++.+.   ...
T Consensus         9 ~~~I~~i~~~~~~~~~~-------------------~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~   68 (316)
T 1ijq_A            9 RHEVRKMTLDRSEYTSL-------------------IP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY   68 (316)
T ss_dssp             BSSEEEEETTSCCCEEE-------------------EC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C
T ss_pred             CCeEEEEECCCcceEeh-------------------hc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCccc
Confidence            36789999887654321                   11 23467899999876555544 45688999998861   222


Q ss_pred             eeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecC-Ce
Q 001295          448 RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD-GK  526 (1106)
Q Consensus       448 ~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-g~  526 (1106)
                      ..  .+.........+++.+.+.. ++++-...+.|.+.|+........+.........+++.+. ++.++++.... +.
T Consensus        69 ~~--~~~~~~~~p~glavd~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~-~g~ly~~d~~~~~~  144 (316)
T 1ijq_A           69 DT--VISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPAK  144 (316)
T ss_dssp             EE--EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT-TTEEEEEECSSSCE
T ss_pred             EE--EEeCCCCCcCEEEEeecCCe-EEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCC-CCEEEEEccCCCCe
Confidence            21  12222345688999876664 5566667889999997654433333333456678887543 33455554433 67


Q ss_pred             EEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEE-CCCeEEEEECCCcceeEEE-
Q 001295          527 IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSI-  604 (1106)
Q Consensus       527 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~-  604 (1106)
                      |...+++.................+++++++                     ..|+.+. ..+.|..+|+.... ...+ 
T Consensus       145 I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~---------------------~~lY~~D~~~~~I~~~d~dg~~-~~~~~  202 (316)
T 1ijq_A          145 IKKGGLNGVDIYSLVTENIQWPNGITLDLLS---------------------GRLYWVDSKLHSISSIDVNGGN-RKTIL  202 (316)
T ss_dssp             EEEEETTSCCEEEEECSSCSCEEEEEEETTT---------------------TEEEEEETTTTEEEEEETTSCS-CEEEE
T ss_pred             EEEEcCCCCCeEEEEECCCCCceEEEEeccC---------------------CEEEEEECCCCeEEEEecCCCc-eEEEe
Confidence            7777765322211111222334445555443                     3455443 56789999986433 3333 


Q ss_pred             ccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295          605 DADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       605 ~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                      ...........+++. .+.++++-...+.|..++..++
T Consensus       203 ~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g  239 (316)
T 1ijq_A          203 EDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG  239 (316)
T ss_dssp             ECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred             ecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCC
Confidence            221122234567774 4556666666788888887666

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.03  E-value=0.00031  Score=84.40  Aligned_cols=246  Identities=13%  Similarity=0.042  Sum_probs=139.0

Q ss_pred             EEEEec-CCCEEEEEe-CC-----------eEEEEEcCCCceee--eecC-CCCCeeEEEEecCCCceEEEee-CCCcEE
Q 001295          815 CFALSK-NDSYVMSAS-GG-----------KISLFNMMTFKTMA--TFMP-PPPAATFLAFHPQDNNIIAIGM-DDSSIQ  877 (1106)
Q Consensus       815 ~l~~s~-~~~~l~~~s-dg-----------~i~vwd~~~~~~~~--~~~~-~~~~v~~l~~s~~d~~~la~g~-~dg~v~  877 (1106)
                      .+++.+ ++++++.|+ +.           .+.+||..+++...  .+.. +.....++++.. +++++++|+ .+..+.
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-~g~lyv~GG~~~~~v~  268 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-NGQIVVTGGNDAKKTS  268 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT-TSCEEEECSSSTTCEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCC-CCCEEEeCCCCCCceE
Confidence            567777 888888876 21           58899998765432  2222 233344577778 889999988 455899


Q ss_pred             EEEeecceEEEEecCcccCe-eEEEEecCCCEEEEEc-CC-----CcEEEEeCCCcccccceeecccCCCCCCCCCCceE
Q 001295          878 IYNVRVDEVKSKLKGHSKRI-TGLAFSHALNVLVSSG-AD-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRV  950 (1106)
Q Consensus       878 iwd~~~~~~~~~l~~h~~~V-~~l~~s~d~~~l~s~s-~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~  950 (1106)
                      +||..+.+-...-..+..+. .+++..+++++++.|+ .+     ..+.+||..+.+   ...+..... .+....-...
T Consensus       269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~---W~~~~~~~~-~p~~~~~~~~  344 (656)
T 1k3i_A          269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT---WTSLPNAKV-NPMLTADKQG  344 (656)
T ss_dssp             EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE---EEEETTSCS-GGGCCCCTTG
T ss_pred             EecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc---ceeCCCccc-cccccccccc
Confidence            99988765332222222222 3456667999999998 44     568999988743   111110000 0000000011


Q ss_pred             EEcCCCcEEEE----------EeCCeEEEEecCCceEeeecccCC-------CCCCeeEEEEC-CCCCEEEEEEcCC---
Q 001295          951 QFHQDQIHFLV----------VHETQLAIFETTKLECVKQWVPRE-------SSAPITHATFS-CDSQLVYACFLDA--- 1009 (1106)
Q Consensus       951 ~~s~dg~~l~~----------~~d~~v~i~d~~~~~~~~~~~~~~-------h~~~v~~l~~s-~d~~~l~t~s~Dg--- 1009 (1106)
                      ++..+++.++.          +....+..||..+...........       ....-.++.|. .++++++.|+.++   
T Consensus       345 ~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~  424 (656)
T 1k3i_A          345 LYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQD  424 (656)
T ss_dssp             GGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSS
T ss_pred             eeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCC
Confidence            22233333333          234568889988766433221110       01122444443 4788888887543   


Q ss_pred             --------eEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCC-----------CcEEEEeec
Q 001295         1010 --------TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-----------GGVHVFEPL 1070 (1106)
Q Consensus      1010 --------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~D-----------g~v~vW~~~ 1070 (1106)
                              .|.+||..+..-....  ...++...    .. ..++..| |+++++.|+.+           ..+.+||+.
T Consensus       425 ~~~~~~~~~v~~yd~~~~~W~~~~--~~~mp~~R----~~-~~~~~l~-~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~  496 (656)
T 1k3i_A          425 SDATTNAHIITLGEPGTSPNTVFA--SNGLYFAR----TF-HTSVVLP-DGSTFITGGQRRGIPFEDSTPVFTPEIYVPE  496 (656)
T ss_dssp             SBCCCCEEEEECCSTTSCCEEEEC--TTCCSSCC----BS-CEEEECT-TSCEEEECCBSBCCTTCCCSBCCCCEEEEGG
T ss_pred             CCcCCcceEEEcCCCCCCCeeEEc--cCCCCCCc----cc-CCeEECC-CCCEEEECCcccCcCcCCCCcccceEEEcCC
Confidence                    6888888877654332  01123221    11 1445566 68999999865           468999998


Q ss_pred             CCC
Q 001295         1071 ESE 1073 (1106)
Q Consensus      1071 ~~~ 1073 (1106)
                      +.+
T Consensus       497 t~~  499 (656)
T 1k3i_A          497 QDT  499 (656)
T ss_dssp             GTE
T ss_pred             CCc
Confidence            755

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.96  E-value=0.0019  Score=68.05  Aligned_cols=197  Identities=9%  Similarity=0.152  Sum_probs=125.8

Q ss_pred             CCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecC---CCc---eEEEeeC---CCcEEEEEee--cceEEE
Q 001295          821 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ---DNN---IIAIGMD---DSSIQIYNVR--VDEVKS  888 (1106)
Q Consensus       821 ~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~---d~~---~la~g~~---dg~v~iwd~~--~~~~~~  888 (1106)
                      ...+++... .+.+.+||+ +++.++.+..  +.+..+.+-|.   +++   ++++...   +++|.+|++.  +++ +.
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~  114 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ  114 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence            444544444 688999999 7888888763  56777776661   122   2333333   5799999874  333 44


Q ss_pred             EecC------cc-cCeeEEEE--ecC-CC-EEEEEcCCCcEEEEeCCC---cccccceeecccCCCCCCCCCCceEEEcC
Q 001295          889 KLKG------HS-KRITGLAF--SHA-LN-VLVSSGADSQLCVWSSDG---WEKQKNRFLQIPTGRTPTAQSDTRVQFHQ  954 (1106)
Q Consensus       889 ~l~~------h~-~~V~~l~~--s~d-~~-~l~s~s~Dg~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~s~  954 (1106)
                      .+..      .. ..+..+|+  ++. ++ +++....+|.+..|++..   +... .+.+..+.-.    ..+..++..+
T Consensus       115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~-~~lVR~f~lg----sq~EgcvvDd  189 (355)
T 3amr_A          115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYIS-GKKVRAFKMN----SQTEGMAADD  189 (355)
T ss_dssp             ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEE-EEEEEEEECS----SCEEEEEEET
T ss_pred             eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCccc-ceEEEEecCC----CCcceEEEcC
Confidence            4421      11 56778888  664 44 688888999999999843   2221 2222222211    3578899999


Q ss_pred             CCcEEEEE-eCCeEEEEecC-----CceEeeecccCCCCCCeeEEEE--CCCCC-EEEEEE-cCCeEEEEEcC-CceeEE
Q 001295          955 DQIHFLVV-HETQLAIFETT-----KLECVKQWVPRESSAPITHATF--SCDSQ-LVYACF-LDATVCVFSAA-NLKLRC 1023 (1106)
Q Consensus       955 dg~~l~~~-~d~~v~i~d~~-----~~~~~~~~~~~~h~~~v~~l~~--s~d~~-~l~t~s-~Dg~i~vwd~~-~~~~~~ 1023 (1106)
                      ....|.++ .+..|..|+.+     +++.+..+....-...+..|++  .++++ ||++++ .+.+..|||.+ +.+.+.
T Consensus       190 ~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg  269 (355)
T 3amr_A          190 EYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVA  269 (355)
T ss_dssp             TTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEE
T ss_pred             CCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEE
Confidence            88888886 44567777754     3556655432222347888888  56666 777666 56799999997 777877


Q ss_pred             eeC
Q 001295         1024 RIN 1026 (1106)
Q Consensus      1024 ~~~ 1026 (1106)
                      .+.
T Consensus       270 ~f~  272 (355)
T 3amr_A          270 DFR  272 (355)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            775

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.90  E-value=0.0036  Score=70.22  Aligned_cols=256  Identities=11%  Similarity=0.083  Sum_probs=137.6

Q ss_pred             CCcEEEEEec-CCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEE
Q 001295          351 SSPMSMDFHP-VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV  429 (1106)
Q Consensus       351 ~~v~~~~~sp-~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las  429 (1106)
                      .....++++| ++..|+++-. .+.|+.+|..++....                    +.........++|+++|++|.+
T Consensus       137 ~~P~~lavdp~~~g~Lyv~d~-~~~I~~id~~~~~v~~--------------------~~~~~~~P~~ia~d~~G~~lyv  195 (430)
T 3tc9_A          137 GGAVWLSFDPKNHNHLYLVGE-QHPTRLIDFEKEYVST--------------------VYSGLSKVRTICWTHEADSMII  195 (430)
T ss_dssp             SCCCEEEEETTEEEEEEEEEB-TEEEEEEETTTTEEEE--------------------EECCCSCEEEEEECTTSSEEEE
T ss_pred             CCCCEEEECCCCCCeEEEEeC-CCcEEEEECCCCEEEE--------------------EecCCCCcceEEEeCCCCEEEE
Confidence            4678999998 4554555543 3889999988765432                    1123446889999999996666


Q ss_pred             EeC-C---C-eEEEEEccCCceeeeeeeeccccCCeeEEEEcC-CCCceEEEEecCCCcEEEEeCCCCceeEEEec-cCC
Q 001295          430 AYS-R---H-IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIFEG-HEA  502 (1106)
Q Consensus       430 ~~~-d---~-~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-h~~  502 (1106)
                      +.. +   . .+.+.+. .+.... ...+. .......++++| ++.  ++++-..++.|..+|..++........ ...
T Consensus       196 ad~~~~~~~~~v~~~~~-~g~~~~-~~~l~-~~~~p~giavdp~~g~--lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~  270 (430)
T 3tc9_A          196 TNDQNNNDRPNNYILTR-ESGFKV-ITELT-KGQNCNGAETHPINGE--LYFNSWNAGQVFRYDFTTQETTPLFTIQDSG  270 (430)
T ss_dssp             EECCSCTTSEEEEEEEG-GGTSCS-EEEEE-ECSSCCCEEECTTTCC--EEEEETTTTEEEEEETTTTEEEEEEECSSSS
T ss_pred             EeCCCCcccceEEEEeC-CCceee-eeeec-cCCCceEEEEeCCCCE--EEEEECCCCEEEEEECCCCcEEEEEEcCCCC
Confidence            543 1   2 3434443 333221 01222 123467889999 565  667776788999999877654222221 223


Q ss_pred             CeEEEeccccCCce-EEEEEecCCeEEEEeCCCCCc----eeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEc--
Q 001295          503 PVYSVCPHHKENIQ-FIFSTALDGKIKAWLYDNLGS----RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD--  575 (1106)
Q Consensus       503 ~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~--  575 (1106)
                      ....++|+++  ++ ++++-...+.|..++.+....    ...+......-   .+ .++.. ....-..+...+...  
T Consensus       271 ~P~gia~~pd--G~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~---g~-~dg~~-~~a~~~~P~~gv~v~~~  343 (430)
T 3tc9_A          271 WEFHIQFHPS--GNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAK---DW-VDGVG-KKARMHAPRQGTFVKNP  343 (430)
T ss_dssp             CCEEEEECTT--SSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCB---CC-BCEEG-GGCBBSSEEEEEEEECG
T ss_pred             cceeEEEcCC--CCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCC---CC-CCCCC-cceEeCCCcceEEEccc
Confidence            4667887654  45 555666788999987764211    11111110000   00 00000 000000111133332  


Q ss_pred             ------CCCCEEEEEECCCeEEEEECCCcceeEEEcc---------CC------CCCCcCeEEEccC-CCEEEEEeCCCc
Q 001295          576 ------TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA---------DG------GLPASPRIRFNKD-GCLLAVSTNDNG  633 (1106)
Q Consensus       576 ------~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---------~~------~~~~v~~v~~s~~-~~~l~~~~~dg~  633 (1106)
                            +++..+++-...+.|+.++. +|........         .+      .......++++++ +.++++-..++.
T Consensus       344 ~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~r  422 (430)
T 3tc9_A          344 AYKGSSDEYDFYFCDRENHCIRILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRR  422 (430)
T ss_dssp             GGTTSSCCEEEEEEEGGGTEEEEECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTE
T ss_pred             cccccCCCCeEEEEECCCcEEEEECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCe
Confidence                  33455555556778888883 5544333311         00      0123567899984 666666556677


Q ss_pred             EEEEEcc
Q 001295          634 IKILATS  640 (1106)
Q Consensus       634 i~iwd~~  640 (1106)
                      |+.++++
T Consensus       423 Ir~i~~e  429 (430)
T 3tc9_A          423 IRKIGYE  429 (430)
T ss_dssp             EEEEEEC
T ss_pred             EEEEccC
Confidence            8877653

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.90  E-value=0.0021  Score=68.75  Aligned_cols=228  Identities=10%  Similarity=0.020  Sum_probs=140.3

Q ss_pred             EEEEEeCCeEEEEEcCCCce-eeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEE-EEecCcccCeeEEE
Q 001295          824 YVMSASGGKISLFNMMTFKT-MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLA  901 (1106)
Q Consensus       824 ~l~~~sdg~i~vwd~~~~~~-~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~-~~l~~h~~~V~~l~  901 (1106)
                      +|+.+....|+.+++..... ...+........+++|.+.++.++.+-...+.|+.+++..+... ..+........+++
T Consensus         6 ~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gla   85 (318)
T 3sov_A            6 LLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLA   85 (318)
T ss_dssp             EEEEECEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEE
T ss_pred             EEEEEccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEE
Confidence            45555567899999986531 11111122356789999855666666667789999998765321 12222234567899


Q ss_pred             EecCC-CEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEe---CCeEEEEecCCceE
Q 001295          902 FSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH---ETQLAIFETTKLEC  977 (1106)
Q Consensus       902 ~s~d~-~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~---d~~v~i~d~~~~~~  977 (1106)
                      +.+.+ .+.++-...+.|.+++++....  .....  .+.    .....+++.|.+..|..+.   .+.|..++......
T Consensus        86 vd~~~g~ly~~d~~~~~I~~~~~dG~~~--~~l~~--~~~----~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~  157 (318)
T 3sov_A           86 CDWLGEKLYWTDSETNRIEVSNLDGSLR--KVLFW--QEL----DQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR  157 (318)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCSC--EEEEC--SSC----SSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC
T ss_pred             EEcCCCeEEEEECCCCEEEEEECCCCcE--EEEEe--CCC----CCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe
Confidence            98754 4555556678899999876321  11111  111    2458899999766665543   46788888764332


Q ss_pred             eeecccCCCCCCeeEEEECCCCCEEEEEE-cCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEE
Q 001295          978 VKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFA 1056 (1106)
Q Consensus       978 ~~~~~~~~h~~~v~~l~~s~d~~~l~t~s-~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~ 1056 (1106)
                       ..+.. ..-.....|+|++++..|+.+. ..+.|..+|++.......+.       +   ..-.|..+++..  +.+++
T Consensus       158 -~~~~~-~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~-------~---~~~~P~glav~~--~~lyw  223 (318)
T 3sov_A          158 -FIIIN-SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK-------G---SLPHPFALTLFE--DILYW  223 (318)
T ss_dssp             -EEEEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-------S---CCSCEEEEEEET--TEEEE
T ss_pred             -EEEEE-CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEec-------C---CCCCceEEEEeC--CEEEE
Confidence             22211 1134678999999777766554 56789999987533322221       0   113355777753  46677


Q ss_pred             EEeCCCcEEEEeecCCC
Q 001295         1057 LGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus      1057 t~~~Dg~v~vW~~~~~~ 1073 (1106)
                      +-...+.|..++..+++
T Consensus       224 td~~~~~V~~~~~~~G~  240 (318)
T 3sov_A          224 TDWSTHSILACNKYTGE  240 (318)
T ss_dssp             EETTTTEEEEEETTTCC
T ss_pred             EecCCCeEEEEECCCCC
Confidence            77677889999987777

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.86  E-value=0.00014  Score=87.16  Aligned_cols=207  Identities=6%  Similarity=-0.040  Sum_probs=127.5

Q ss_pred             CCeeEEEEecCCCEEEEEe--CCeEEEEEcCC----CceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecc
Q 001295          811 EAVPCFALSKNDSYVMSAS--GGKISLFNMMT----FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD  884 (1106)
Q Consensus       811 ~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~----~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~  884 (1106)
                      ..+..++|++.+..|..+.  .+.|+.+++.+    ......+.........|++.+.+++++++-...+.|.++++...
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~  485 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  485 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence            4467889999888887776  57899999875    22222222222345678888646666666666789999998755


Q ss_pred             eEEEEecCcccCeeEEEEecCCCEEEEEcC-C-CcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE
Q 001295          885 EVKSKLKGHSKRITGLAFSHALNVLVSSGA-D-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV  962 (1106)
Q Consensus       885 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-D-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~  962 (1106)
                      .....+.........|++.|++.+|+.+.. . +.|.+.+++....  ..++.  ..    ......|+|+|++..|..+
T Consensus       486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~--~~l~~--~~----l~~PnGlavd~~~~~LY~a  557 (699)
T 1n7d_A          486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI--YSLVT--EN----IQWPNGITLDLLSGRLYWV  557 (699)
T ss_dssp             CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC--CEESC--SS----CSSCCCEEECTTTCCEEEE
T ss_pred             ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe--eEEEe--CC----CCCccEEEEeccCCEEEEE
Confidence            433333333345678999987666555443 2 6777777764221  11111  11    1245789999987666553


Q ss_pred             --eCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295          963 --HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus       963 --~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
                        ..+.|.++++........+...........|++..+ .++++....+.|..++..+|+.+..+.
T Consensus       558 D~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~  622 (699)
T 1n7d_A          558 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA  622 (699)
T ss_dssp             ETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred             ecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence              567899999875433222221111233455666544 445555567899999999999887775

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.86  E-value=0.005  Score=69.08  Aligned_cols=253  Identities=13%  Similarity=0.104  Sum_probs=137.5

Q ss_pred             CCcEEEEEecC--CCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEE
Q 001295          351 SSPMSMDFHPV--QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  428 (1106)
Q Consensus       351 ~~v~~~~~sp~--g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  428 (1106)
                      .....++|+|+  +..|+++ ...+.|+.+|..+++...                    +.........++|+++|++++
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~-D~~~~I~~id~~~g~v~~--------------------~~~~~~~P~giavd~dG~lyV  197 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWV-GQRDAFRHVDFVNQYVDI--------------------KTTNIGQCADVNFTLNGDMVV  197 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEE-CBTSCEEEEETTTTEEEE--------------------ECCCCSCEEEEEECTTCCEEE
T ss_pred             CCCceEEEccccCCCEEEEE-eCCCCEEEEECCCCEEEE--------------------eecCCCCccEEEECCCCCEEE
Confidence            45779999995  3334554 333899999998776543                    122344689999999999555


Q ss_pred             EEeCC---Ce-EEEEEccCCceeeeeeeeccccCCeeEEEEcC-CCCceEEEEecCCCcEEEEeCCCCceeEEE-ec-cC
Q 001295          429 VAYSR---HI-VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIF-EG-HE  501 (1106)
Q Consensus       429 s~~~d---~~-v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~-h~  501 (1106)
                      +....   .. +...+...+....  ..+. .-.....+++.| ++.  ++++-..++.|+.+|..++.....+ .. ..
T Consensus       198 ad~~~~~~~~gv~~~~~~~~~~~~--~~~~-~~~~P~giavd~~~G~--lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~  272 (433)
T 4hw6_A          198 VDDQSSDTNTGIYLFTRASGFTER--LSLC-NARGAKTCAVHPQNGK--IYYTRYHHAMISSYDPATGTLTEEEVMMDTK  272 (433)
T ss_dssp             EECCSCTTSEEEEEECGGGTTCCE--EEEE-ECSSBCCCEECTTTCC--EEECBTTCSEEEEECTTTCCEEEEEEECSCC
T ss_pred             EcCCCCcccceEEEEECCCCeecc--cccc-ccCCCCEEEEeCCCCe--EEEEECCCCEEEEEECCCCeEEEEEeccCCC
Confidence            44321   22 3333333221110  1111 234567789999 565  5666667789999998877763333 21 12


Q ss_pred             CCeEEEeccccCCce-EEEEEecCCeEEEEeCCCCCc----eeEeeCC-CCeeEEEEEecCCCeEEEeeeccceeEEEE-
Q 001295          502 APVYSVCPHHKENIQ-FIFSTALDGKIKAWLYDNLGS----RVDYEAP-GRWCTTMAYSADGTRTYQGFRKRSLGVVQF-  574 (1106)
Q Consensus       502 ~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~----~~~~~~~-~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~-  574 (1106)
                      ..-..++|+++  ++ +.++-...+.|+.++++....    ...+.+. ...-     ..++..  ....-..-..+++ 
T Consensus       273 ~~~~~ia~dpd--G~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g-----~~dg~~--~~a~~~~P~giav~  343 (433)
T 4hw6_A          273 GSNFHIVWHPT--GDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPG-----WVDGMG--TGARLWGPNQGIFV  343 (433)
T ss_dssp             SSCEEEEECTT--SSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCC-----CBCEEG--GGSBCSSEEEEEEE
T ss_pred             CCcccEEEeCC--CCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCc-----cCCCcc--cceEEcCCccEEEE
Confidence            22345777554  45 555666678999988763211    1111111 0000     000000  0000012234555 


Q ss_pred             --------cCCCCEEEEEECCCeEEEEECCCcceeEEEccCCC----------------CCCcCeEEEc-cCCCEEEEEe
Q 001295          575 --------DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG----------------LPASPRIRFN-KDGCLLAVST  629 (1106)
Q Consensus       575 --------~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----------------~~~v~~v~~s-~~~~~l~~~~  629 (1106)
                              .++++.+++-...+.|+.++. +|... ++.+...                ......++++ ++|.++++-.
T Consensus       344 ~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~  421 (433)
T 4hw6_A          344 KNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDC  421 (433)
T ss_dssp             ECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEG
T ss_pred             ccccccccCCCCcEEEEECCCCEEEEECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeC
Confidence                    555566666666788888885 55433 3322111                1234578888 5666666666


Q ss_pred             CCCcEEEEEcc
Q 001295          630 NDNGIKILATS  640 (1106)
Q Consensus       630 ~dg~i~iwd~~  640 (1106)
                      .++.|+.++++
T Consensus       422 ~n~rIr~i~~e  432 (433)
T 4hw6_A          422 DNHRVRKIAPE  432 (433)
T ss_dssp             GGTEEEEEEEC
T ss_pred             CCCEEEEEecC
Confidence            67778877653

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.83  E-value=0.0061  Score=68.27  Aligned_cols=253  Identities=8%  Similarity=-0.001  Sum_probs=146.5

Q ss_pred             CeeEEEEec-CCCEEEEEe--CCeEEEEEcCCCceeeeecCC---CCCeeEEEE-------ecCCCceEEEeeCCC----
Q 001295          812 AVPCFALSK-NDSYVMSAS--GGKISLFNMMTFKTMATFMPP---PPAATFLAF-------HPQDNNIIAIGMDDS----  874 (1106)
Q Consensus       812 ~v~~l~~s~-~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~---~~~v~~l~~-------s~~d~~~la~g~~dg----  874 (1106)
                      ....|+|+| +...|.++.  .+.|++.|..++.........   ......++|       ++ ++..|+++...+    
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~  218 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD  218 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence            467899998 455555555  367999998876655443321   235889999       99 777555554443    


Q ss_pred             ---cEEEEEeec-ceEE-----EEecCcccCeeEEEEecC-CCEEEEEcCCCcEEEEeCC-------Cccc------c--
Q 001295          875 ---SIQIYNVRV-DEVK-----SKLKGHSKRITGLAFSHA-LNVLVSSGADSQLCVWSSD-------GWEK------Q--  929 (1106)
Q Consensus       875 ---~v~iwd~~~-~~~~-----~~l~~h~~~V~~l~~s~d-~~~l~s~s~Dg~i~vwd~~-------~~~~------~--  929 (1106)
                         .|.+++... +...     ..+.. -.....++++|+ +.++++-..++.|..+|++       ++..      .  
T Consensus       219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~  297 (496)
T 3kya_A          219 ESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP  297 (496)
T ss_dssp             GEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred             cCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence               266665443 2221     12221 123467889994 5566667778889999987       4432      0  


Q ss_pred             --cceeecccCCCCCCCCCCceEEEcCCCcEEEEE--eCCeEEEEec--CCceE-----ee-ecccCCC---------CC
Q 001295          930 --KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFET--TKLEC-----VK-QWVPRES---------SA  988 (1106)
Q Consensus       930 --~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~--~d~~v~i~d~--~~~~~-----~~-~~~~~~h---------~~  988 (1106)
                        ...+......     .....++|+|+|++|.++  ....|+.++.  .++..     +. .+...++         -.
T Consensus       298 g~~~~l~~~~~~-----~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~  372 (496)
T 3kya_A          298 NTFKQLFTIADP-----SWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMN  372 (496)
T ss_dssp             TTEEEEEECSSS-----SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCS
T ss_pred             cccceeEecCCC-----CCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccC
Confidence              0011222111     245789999999965553  5678888654  33322     11 1111111         11


Q ss_pred             Cee-EEEEC-------CCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcc-----------cCCC---CCCCCccceEEE
Q 001295          989 PIT-HATFS-------CDSQLVYACFLDATVCVFSAANLKLRCRINPSAY-----------LPAG---VSSSNVHPLVIA 1046 (1106)
Q Consensus       989 ~v~-~l~~s-------~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~-----------~~~~---~~~~~v~~~~~~ 1046 (1106)
                      ... .++..       ++|.+.++-.....|+.++ .+|.. .++.....           ...|   ....--.|..|+
T Consensus       373 ~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v-~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIa  450 (496)
T 3kya_A          373 NPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIV-STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLV  450 (496)
T ss_dssp             SEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBE-EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEE
T ss_pred             CCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCE-EEEecccccccccCccccccCCCCchhhhhcCCCcEEE
Confidence            234 45554       4566666666778899998 56643 33321100           0011   001123477999


Q ss_pred             EeCCCCCEEEEEeCCCcEEEEeecCCC
Q 001295         1047 AHPQEPNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus      1047 ~~~~d~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
                      +.++++.++++-..+..|+.+++....
T Consensus       451 vd~~~g~lyVaD~~N~rIrki~~~~~~  477 (496)
T 3kya_A          451 YDDVKEMFYVHDQVGHTIRTISMEQEE  477 (496)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECCCC
T ss_pred             EECCCCEEEEEeCCCCEEEEEECCCCc
Confidence            998447777777778899999987765

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.79  E-value=0.0052  Score=68.84  Aligned_cols=253  Identities=8%  Similarity=0.004  Sum_probs=139.2

Q ss_pred             ceEEEEEcC-CCceEEEeec-CceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEE----
Q 001295          745 KISRLIFTN-SGNAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL----  818 (1106)
Q Consensus       745 ~i~~~~~s~-~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~----  818 (1106)
                      ....++|+| +...|+++.. .+.|++.|+.                      ++.+....-.+.........++|    
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~----------------------~~~v~~l~~~~~~~~~~p~~ia~~~~~  197 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLK----------------------NRMLSSPLNINTIPTNRIRSIAFNKKI  197 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETT----------------------TTEEEEEECCTTSSCSBEEEEEECCCB
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECC----------------------CCEEEEEEccCccccCCCcEEEEeecc
Confidence            457889998 3444555544 4566666544                      22222111011112345889999    


Q ss_pred             ---ecCCCEEEEEe-CC-------eEEEEEcCC-Ccee-----eeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEe
Q 001295          819 ---SKNDSYVMSAS-GG-------KISLFNMMT-FKTM-----ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV  881 (1106)
Q Consensus       819 ---s~~~~~l~~~s-dg-------~i~vwd~~~-~~~~-----~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~  881 (1106)
                         ++++++|+++. .+       .|.+++... +...     ..+.. ......++++|+++.++++-..++.|+.+|+
T Consensus       198 ~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~  276 (496)
T 3kya_A          198 EGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDL  276 (496)
T ss_dssp             TTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECH
T ss_pred             cccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEec
Confidence               99999777776 32       266665443 2221     12221 1234678889966777777778889999999


Q ss_pred             e-------cceE-----------EEEe-c-CcccCeeEEEEecCCCEE-EEEcCCCcEEEEeCCCc--ccccceeecc--
Q 001295          882 R-------VDEV-----------KSKL-K-GHSKRITGLAFSHALNVL-VSSGADSQLCVWSSDGW--EKQKNRFLQI--  936 (1106)
Q Consensus       882 ~-------~~~~-----------~~~l-~-~h~~~V~~l~~s~d~~~l-~s~s~Dg~i~vwd~~~~--~~~~~~~~~~--  936 (1106)
                      .       ++..           ...+ . +....-+.|+|+|+|++| ++-+....|+.++.+..  .......+.-  
T Consensus       277 ~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~  356 (496)
T 3kya_A          277 VDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGY  356 (496)
T ss_dssp             HHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBT
T ss_pred             ccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCC
Confidence            7       4543           1121 1 122345789999999954 44456678888665431  1100011110  


Q ss_pred             -cCCCCC------CCCCCc-eEEEc-------CCCcEEEE-EeCCeEEEEecCCceEeeecccC------------C---
Q 001295          937 -PTGRTP------TAQSDT-RVQFH-------QDQIHFLV-VHETQLAIFETTKLECVKQWVPR------------E---  985 (1106)
Q Consensus       937 -~~~~~~------~~~~i~-~~~~s-------~dg~~l~~-~~d~~v~i~d~~~~~~~~~~~~~------------~---  985 (1106)
                       ..+...      .-.... .++..       ++|.++++ .....|+.++. ++.. .++...            +   
T Consensus       357 g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~v-~TiaG~g~~~~~~~~~~~G~~d  434 (496)
T 3kya_A          357 KQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGIV-STYAGRGASTSLADGNQWGTDD  434 (496)
T ss_dssp             TBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCBE-EEEEESCTTHHHHHSCSCCCCC
T ss_pred             CCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CCCE-EEEecccccccccCccccccCC
Confidence             011110      001233 34444       45666666 46788999984 4533 333211            1   


Q ss_pred             -------CCCCeeEEEECCC-CCEEEEEEcCCeEEEEEcCCceeE
Q 001295          986 -------SSAPITHATFSCD-SQLVYACFLDATVCVFSAANLKLR 1022 (1106)
Q Consensus       986 -------h~~~v~~l~~s~d-~~~l~t~s~Dg~i~vwd~~~~~~~ 1022 (1106)
                             .-.....|+++++ |.+.++=.....|+.++++.....
T Consensus       435 G~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~  479 (496)
T 3kya_A          435 GDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENV  479 (496)
T ss_dssp             EETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred             CCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence                   1134678888886 666665566778888887765444

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.78  E-value=0.0082  Score=72.32  Aligned_cols=208  Identities=6%  Similarity=-0.043  Sum_probs=130.2

Q ss_pred             CCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCC----ceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeec
Q 001295          810 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMTF----KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV  883 (1106)
Q Consensus       810 ~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~----~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~  883 (1106)
                      ...+..+++++.+..|..+.  .+.|+.+++...    .....+.........|++.+.+++++++-...+.|.+.++..
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG  502 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  502 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence            45678899998777776665  588999998753    222333334456788999984556777767788999999875


Q ss_pred             ceEEEEecCcccCeeEEEEecCCCEEEEEcC-C-CcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE
Q 001295          884 DEVKSKLKGHSKRITGLAFSHALNVLVSSGA-D-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV  961 (1106)
Q Consensus       884 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-D-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~  961 (1106)
                      ......+........+|++.|.+.+|+.+.. + +.|.+.+++....  ..++.  .+ .   .....|++++.+..|..
T Consensus       503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~--~~lv~--~~-l---~~P~GLavD~~~~~LYw  574 (791)
T 3m0c_C          503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI--YSLVT--EN-I---QWPNGITLDLLSGRLYW  574 (791)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE--EEEEC--SS-C---SCEEEEEEETTTTEEEE
T ss_pred             CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce--EEEEe--CC-C---CCceEEEEecCCCeEEE
Confidence            4433333344456889999998766666553 2 6788888876332  11111  11 1   24688999987776666


Q ss_pred             E--eCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295          962 V--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus       962 ~--~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
                      +  ....|..+++..............-.....|++..+ .+.++-...+.|...|..+|+.+..+.
T Consensus       575 aD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~-~lYwtD~~~~~I~~~dk~tG~~~~~l~  640 (791)
T 3m0c_C          575 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA  640 (791)
T ss_dssp             EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT-EEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             EeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC-EEEEEECCCCEEEEEeCCCCcceEEee
Confidence            4  557899999875544333322122334567776433 334444456788888887776655553

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.74  E-value=0.012  Score=62.75  Aligned_cols=209  Identities=12%  Similarity=0.025  Sum_probs=124.4

Q ss_pred             CCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCC-EEEE
Q 001295          351 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS-LFGV  429 (1106)
Q Consensus       351 ~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~-~las  429 (1106)
                      ..+.+++|.+.+..|+.+-...+.|..++...+.....                  ++...-.....+++.+.+. +.++
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~------------------~~~~~l~~p~glavd~~~g~ly~~   96 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN------------------VVVSGLLSPDGLACDWLGEKLYWT   96 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE------------------EEEECCSCCCEEEEETTTTEEEEE
T ss_pred             CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE------------------EEcCCCCCccEEEEEcCCCeEEEE
Confidence            45779999997766777766778899999876532110                  0111122466789987544 4455


Q ss_pred             EeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEe-cCCCcEEEEeCCCCceeEEE-eccCCCeEEE
Q 001295          430 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC-GDDKTIKVWDATNGAKQYIF-EGHEAPVYSV  507 (1106)
Q Consensus       430 ~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~  507 (1106)
                      -...+.|.++++++.....   .+.........+++.|.+.. ++++- +..+.|...++. |.....+ ...-.....+
T Consensus        97 d~~~~~I~~~~~dG~~~~~---l~~~~~~~P~giavdp~~g~-ly~td~~~~~~I~r~~~d-G~~~~~~~~~~l~~Pngl  171 (318)
T 3sov_A           97 DSETNRIEVSNLDGSLRKV---LFWQELDQPRAIALDPSSGF-MYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPNGL  171 (318)
T ss_dssp             ETTTTEEEEEETTSCSCEE---EECSSCSSEEEEEEEGGGTE-EEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEEE
T ss_pred             ECCCCEEEEEECCCCcEEE---EEeCCCCCccEEEEeCCCCE-EEEEecCCCCEEEEEEcC-CCCeEEEEECCCCCccEE
Confidence            5567889999987643221   12233456789999987664 33333 346788888865 3333333 2333456788


Q ss_pred             eccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECC
Q 001295          508 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD  587 (1106)
Q Consensus       508 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  587 (1106)
                      ++++.. +.+.++-+..+.|..+|++.................+++..                      +..+.+-...
T Consensus       172 avd~~~-~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~----------------------~~lywtd~~~  228 (318)
T 3sov_A          172 TLDYEE-QKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE----------------------DILYWTDWST  228 (318)
T ss_dssp             EEETTT-TEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET----------------------TEEEEEETTT
T ss_pred             EEeccC-CEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC----------------------CEEEEEecCC
Confidence            886543 35666666788899999874333222222222333333321                      1234444466


Q ss_pred             CeEEEEECCCcceeEEEc
Q 001295          588 FSIKFWDMDSVQLLTSID  605 (1106)
Q Consensus       588 ~~i~iwd~~~~~~~~~~~  605 (1106)
                      +.|..++..+|+....+.
T Consensus       229 ~~V~~~~~~~G~~~~~i~  246 (318)
T 3sov_A          229 HSILACNKYTGEGLREIH  246 (318)
T ss_dssp             TEEEEEETTTCCSCEEEE
T ss_pred             CeEEEEECCCCCceEEEe
Confidence            788888887777665554

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.59  E-value=0.011  Score=62.41  Aligned_cols=189  Identities=12%  Similarity=0.127  Sum_probs=117.9

Q ss_pred             ceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecC----CC---E-EEEEcC--CCcEEEEeCCCcccccceee
Q 001295          865 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA----LN---V-LVSSGA--DSQLCVWSSDGWEKQKNRFL  934 (1106)
Q Consensus       865 ~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d----~~---~-l~s~s~--Dg~i~vwd~~~~~~~~~~~~  934 (1106)
                      .+++.....+-+.+||+ +|+.++.+..  +.++.|..-|+    |+   + +++.-.  +++|.+|+++.....    +
T Consensus        41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~----l  113 (355)
T 3amr_A           41 SKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT----L  113 (355)
T ss_dssp             CEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC----E
T ss_pred             cEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc----e
Confidence            45555566788999999 8888888864  56777777663    22   2 233333  578999987532111    1


Q ss_pred             cccCCC--C--CCCCCCceEEE--cCC-Cc-EEEE-EeCCeEEEEec-------CCceEeeecccCCCCCCeeEEEECCC
Q 001295          935 QIPTGR--T--PTAQSDTRVQF--HQD-QI-HFLV-VHETQLAIFET-------TKLECVKQWVPRESSAPITHATFSCD  998 (1106)
Q Consensus       935 ~~~~~~--~--~~~~~i~~~~~--s~d-g~-~l~~-~~d~~v~i~d~-------~~~~~~~~~~~~~h~~~v~~l~~s~d  998 (1106)
                      ......  .  .....+..+++  +|. ++ ++.+ ..++.+..|++       .+.+.++.+..   .+.+-.+...+.
T Consensus       114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l---gsq~EgcvvDd~  190 (355)
T 3amr_A          114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM---NSQTEGMAADDE  190 (355)
T ss_dssp             EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC---SSCEEEEEEETT
T ss_pred             eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC---CCCcceEEEcCC
Confidence            111110  0  00135677888  774 54 4444 57789999988       34567787765   357889999999


Q ss_pred             CCEEEEEEcCCeEEEEEcC-----CceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCC-EEEEEe-CCCcEEEEeec
Q 001295          999 SQLVYACFLDATVCVFSAA-----NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGL-SDGGVHVFEPL 1070 (1106)
Q Consensus       999 ~~~l~t~s~Dg~i~vwd~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~-~l~t~~-~Dg~v~vW~~~ 1070 (1106)
                      ...|+.+-+|.-|..++.+     +++.+..+.      .++-...+.-+.+-..+ +++ +|++++ .++++.|||..
T Consensus       191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~------~g~l~aDvEGLai~~~~-~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD------GRHLTRDIEGLTIYYAA-DGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS------SSSBCSCEEEEEEEECG-GGCEEEEEEEGGGTEEEEEESS
T ss_pred             CCeEEEecccceEEEEeCCcCCCCCceEEEEec------CCccccCcceEEEEecC-CCCEEEEEEcCCCCEEEEEECC
Confidence            9999999998766666644     455665543      11112224533443344 445 555555 67899999996

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.51  E-value=0.057  Score=65.04  Aligned_cols=207  Identities=11%  Similarity=0.008  Sum_probs=116.5

Q ss_pred             CcCeEEEEEccCCCEE-EEEeCCCeEEEEEccCCcee-eeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCC
Q 001295          412 GVSVNRVIWSPDGSLF-GVAYSRHIVQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT  489 (1106)
Q Consensus       412 ~~~V~~l~~spdg~~l-as~~~d~~v~iwd~~~~~~~-~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~  489 (1106)
                      ...+..|+|.+.+..| ++-...+.|+.+++...... .....+.........|++.+.++. ++++-...+.|.+.++.
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~-LY~tD~~~~~I~v~~ld  501 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTK  501 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETT
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCc-EEEEecCCCeEEEEeCC
Confidence            4467899999955544 45456688999998753210 011123334456788999988875 56666778899999977


Q ss_pred             CCceeEEEeccCCCeEEEeccccCCceEEEEEecC-CeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccc
Q 001295          490 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD-GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS  568 (1106)
Q Consensus       490 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~  568 (1106)
                      .......+.........|++.+.. +.++++-... +.|...+++.......+.........|++.+.+.          
T Consensus       502 G~~~~~l~~~~l~~P~gIaVDp~~-g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~----------  570 (791)
T 3m0c_C          502 GVKRKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSG----------  570 (791)
T ss_dssp             SSSEEEEEECTTCCEEEEEEETTT-TEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTT----------
T ss_pred             CCeEEEEEeCCCCCcceEEEecCC-CCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCC----------
Confidence            544333333444567888876543 3444554333 6787777764333322222233445555554433          


Q ss_pred             eeEEEEcCCCCEEEEE-ECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295          569 LGVVQFDTTKNRFLAA-GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       569 i~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                                 .|+.+ ...+.|...++........+...........|++.. +.++++-...+.|...+..++
T Consensus       571 -----------~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG  633 (791)
T 3m0c_C          571 -----------RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTG  633 (791)
T ss_dssp             -----------EEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred             -----------eEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCC
Confidence                       45444 345788888886544444443322222334555532 234444445677777776666

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.48  E-value=0.17  Score=54.34  Aligned_cols=248  Identities=8%  Similarity=0.078  Sum_probs=156.6

Q ss_pred             EEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeCCC
Q 001295          355 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH  434 (1106)
Q Consensus       355 ~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~  434 (1106)
                      +.-.+|..+ ++|.-. ..++.|+|+++.+++....+                    ...|..=.|-.+ +.|+..+ +.
T Consensus        70 sAIMnP~~~-iiALra-g~~lQiFnle~K~klks~~~--------------------~e~VvfWkWis~-~~l~lVT-~t  125 (494)
T 1bpo_A           70 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISL-NTVALVT-DN  125 (494)
T ss_dssp             EEEECSSSS-CEEEEE-TTEEEEEETTTTEEEEEEEC--------------------SSCCCEEEEEET-TEEEEEC-SS
T ss_pred             eeeeCCCCc-EEEEec-CCeEEEEchHHhhhhcceec--------------------CCCceEEEecCC-CeEEEEc-CC
Confidence            455788877 566654 68999999999888765322                    225666666544 4565554 46


Q ss_pred             eEEEEEccCCceeeeeeeecccc----CCeeEEEEcCCCCceEEEEec------CCCcEEEEeCCCCceeEEEeccCCCe
Q 001295          435 IVQIYSYHGGDEVRQHLEIDAHV----GGVNDIAFSHPNKQLCVITCG------DDKTIKVWDATNGAKQYIFEGHEAPV  504 (1106)
Q Consensus       435 ~v~iwd~~~~~~~~~~~~l~~h~----~~V~~~~~s~d~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~h~~~v  504 (1106)
                      .|.-|++.+......  .+..|.    ..|..-..+++.++ ++++|=      -.|.+.+|..+.+ .-+.+.||.+.-
T Consensus       126 aVyHWsi~~~s~P~k--vFdR~~~L~~~QIInY~~d~~~kW-~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F  201 (494)
T 1bpo_A          126 AVYHWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKW-LLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASF  201 (494)
T ss_dssp             EEEEEESSSSCCCEE--EEECCGGGTTCEEEEEEECTTSSE-EEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEE
T ss_pred             eeEEecccCCCCchh--heecchhcccceEEEEEECCCCCe-EEEEeecccCCcccceEEEeecccc-ccchheeeeeee
Confidence            699999976433222  344432    35777778899996 333332      3477899996554 467788887776


Q ss_pred             EEEeccccCCc-eEEEEEecC---CeEEEEeCCCC-CceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCC
Q 001295          505 YSVCPHHKENI-QFIFSTALD---GKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN  579 (1106)
Q Consensus       505 ~~~~~~~~~~~-~~l~s~~~d---g~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~  579 (1106)
                      ..+.+...... .++..+...   +.+++-++... ...   .........+.|.|+..       ..--..+.+++.-.
T Consensus       202 ~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~---~~f~kk~vdv~fppe~~-------~DFPvamqvs~kyg  271 (494)
T 1bpo_A          202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN---QPFPKKAVDVFFPPEAQ-------NDFPVAMQISEKHD  271 (494)
T ss_dssp             EEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTC---CCCCCEEEECCCCTTST-------TCCEEEEEEETTTT
T ss_pred             EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCC---CCccceeeeeeCCcccc-------cCceeEEEecccCC
Confidence            66654332222 234444332   78888888643 111   11122344455555433       12334566777777


Q ss_pred             EEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295          580 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       580 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                      .+.....-|.|++||+.++.++..-+....  .|...+.+....-++.....|.|.-..+...
T Consensus       272 viyviTK~G~i~lyDleTgt~i~~nrIs~~--~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~  332 (494)
T 1bpo_A          272 VVFLITKYGYIHLYDLETGTCIYMNRISGE--TIFVTAPHEATAGIIGVNRKGQVLSVCVEEE  332 (494)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred             EEEEEecCceEEEEecccceeeeeecccCC--ceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence            888899999999999999999987765433  4555555555555666668888877777665

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.45  E-value=0.18  Score=54.12  Aligned_cols=234  Identities=9%  Similarity=0.097  Sum_probs=140.2

Q ss_pred             EcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccc
Q 001295          574 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA  653 (1106)
Q Consensus       574 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  653 (1106)
                      .+|..+.++.-. ..++.++|+++.+.+..+....   .|.--.|-.+ +.|+..+. ..|+-|++.....+.+.+..|.
T Consensus        73 MnP~~~iiALra-g~~lQiFnle~K~klks~~~~e---~VvfWkWis~-~~l~lVT~-taVyHWsi~~~s~P~kvFdR~~  146 (494)
T 1bpo_A           73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWISL-NTVALVTD-NAVYHWSMEGESQPVKMFDRHS  146 (494)
T ss_dssp             ECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS---CCCEEEEEET-TEEEEECS-SEEEEEESSSSCCCEEEEECCG
T ss_pred             eCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC---CceEEEecCC-CeEEEEcC-CeeEEecccCCCCchhheecch
Confidence            444444444433 7899999999999988887654   3666666544 34544443 5899999865433333333222


Q ss_pred             cccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccce
Q 001295          654 YDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCR  733 (1106)
Q Consensus       654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~  733 (1106)
                      ..                                                                              
T Consensus       147 ~L------------------------------------------------------------------------------  148 (494)
T 1bpo_A          147 SL------------------------------------------------------------------------------  148 (494)
T ss_dssp             GG------------------------------------------------------------------------------
T ss_pred             hc------------------------------------------------------------------------------
Confidence            11                                                                              


Q ss_pred             ecccCccccccceEEEEEcCCCceEEEeec-------CceEEEeeccccccCCCCccccccCccccCCCCCCccccccCC
Q 001295          734 SLRLPENLRATKISRLIFTNSGNAILALAS-------NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  806 (1106)
Q Consensus       734 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  806 (1106)
                              ....|.....+++.++++..|-       .|.+.+|..+..                      .-..  +.|
T Consensus       149 --------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~----------------------~sQ~--ieG  196 (494)
T 1bpo_A          149 --------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK----------------------VSQP--IEG  196 (494)
T ss_dssp             --------TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC----------------------CEEE--ECC
T ss_pred             --------ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc----------------------ccch--hee
Confidence                    2356667777777777665442       256666665432                      1111  111


Q ss_pred             CCCCCCeeEEEEecC---CCEEEEEe----CCeEEEEEcCCC---cee-----ee-e-c--CCCCCeeEEEEecCCCceE
Q 001295          807 SNPEEAVPCFALSKN---DSYVMSAS----GGKISLFNMMTF---KTM-----AT-F-M--PPPPAATFLAFHPQDNNII  867 (1106)
Q Consensus       807 ~~~~~~v~~l~~s~~---~~~l~~~s----dg~i~vwd~~~~---~~~-----~~-~-~--~~~~~v~~l~~s~~d~~~l  867 (1106)
                        |...-..+.+..+   .+.++.+.    .++++|.++...   ...     .. + .  ...+-..++.+|+ .-.++
T Consensus       197 --haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~-kygvi  273 (494)
T 1bpo_A          197 --HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVV  273 (494)
T ss_dssp             --SEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEET-TTTEE
T ss_pred             --eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecc-cCCEE
Confidence              2211111111111   11333333    378999998542   110     11 1 1  1233457888888 66788


Q ss_pred             EEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCc
Q 001295          868 AIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW  926 (1106)
Q Consensus       868 a~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~  926 (1106)
                      ..-+.-|.|++||+.++.++..-+-..+.|..-+......=++.....|.|.--.++..
T Consensus       274 yviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~  332 (494)
T 1bpo_A          274 FLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE  332 (494)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred             EEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence            88899999999999999999887777778877777666666666778887776666653

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.38  E-value=0.021  Score=59.64  Aligned_cols=202  Identities=11%  Similarity=0.062  Sum_probs=123.2

Q ss_pred             CCeeEEEEecCCCEEEEEe--CCeEEEEEcCCCceeee-ecC----CC--CCeeEEEE---ecCCCceEEEeeC------
Q 001295          811 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMAT-FMP----PP--PAATFLAF---HPQDNNIIAIGMD------  872 (1106)
Q Consensus       811 ~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~-~~~----~~--~~v~~l~~---s~~d~~~la~g~~------  872 (1106)
                      --..++.|.+....+..++  .++|..|+...+..... +.+    ..  ..+..+.+   .| +++++++...      
T Consensus        13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~~   91 (334)
T 2p9w_A           13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFNF   91 (334)
T ss_dssp             CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTCT
T ss_pred             cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEcccccccc
Confidence            3345789988666666666  79999999986544333 222    11  13578999   68 6888876442      


Q ss_pred             -------CCcEEEEEee---cceEEEEec--Ccc-----------cCeeEEEEecCCCEEEEEcCC-CcEEEEeCCCccc
Q 001295          873 -------DSSIQIYNVR---VDEVKSKLK--GHS-----------KRITGLAFSHALNVLVSSGAD-SQLCVWSSDGWEK  928 (1106)
Q Consensus       873 -------dg~v~iwd~~---~~~~~~~l~--~h~-----------~~V~~l~~s~d~~~l~s~s~D-g~i~vwd~~~~~~  928 (1106)
                             +..|..||+.   +++.+....  +..           .....++..++|+..++++.- +.|...+.+....
T Consensus        92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~  171 (334)
T 2p9w_A           92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTV  171 (334)
T ss_dssp             TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCE
T ss_pred             cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEE
Confidence                   6789999999   777654433  221           247899999999999988877 7766666554211


Q ss_pred             ccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCCeEEEEecCCceEeeecccC--C---CCCCeeEE-EECCCCCE
Q 001295          929 QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPR--E---SSAPITHA-TFSCDSQL 1001 (1106)
Q Consensus       929 ~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~~v~i~d~~~~~~~~~~~~~--~---h~~~v~~l-~~s~d~~~ 1001 (1106)
                       ....+.....  ........++++|||+.|++. ..+.+..+|+.+.... .+...  +   .-.....| ..-.+|+.
T Consensus       172 -~~~~~~~~~~--~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~-~v~~~~~G~~~~~~~~dgilp~~~~G~v  247 (334)
T 2p9w_A          172 -STFAWESGNG--GQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAW-PEPVKINGDFGTLSGTEKIVTVPVGNES  247 (334)
T ss_dssp             -EEEEECCCCS--SSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCC-CEECEESSCCCCCTTEEEEEEEEETTEE
T ss_pred             -eeeeecCCCc--ccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcce-eecccccCCcccccCcccccccccCCEE
Confidence             1111111111  111356799999999988884 5888999998843220 11111  1   11223343 33347777


Q ss_pred             -EEEEEcCCeEEEEEcC
Q 001295         1002 -VYACFLDATVCVFSAA 1017 (1106)
Q Consensus      1002 -l~t~s~Dg~i~vwd~~ 1017 (1106)
                       |++.+..+.+.+.+-+
T Consensus       248 llV~~~~~~~~~l~S~D  264 (334)
T 2p9w_A          248 VLVGARAPYAISFRSWD  264 (334)
T ss_dssp             EEEEEETTEEEEEECSS
T ss_pred             EEEEcCCCCEEEEECCC
Confidence             4555556665555543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.35  E-value=0.044  Score=59.46  Aligned_cols=231  Identities=13%  Similarity=0.115  Sum_probs=120.0

Q ss_pred             CeeEEEEecCCCEEEEEeCCeEEEEEcCCCce--eeeec---CCCCCeeEEEEecC---CCceEEEeeCC-----CcEEE
Q 001295          812 AVPCFALSKNDSYVMSASGGKISLFNMMTFKT--MATFM---PPPPAATFLAFHPQ---DNNIIAIGMDD-----SSIQI  878 (1106)
Q Consensus       812 ~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~--~~~~~---~~~~~v~~l~~s~~---d~~~la~g~~d-----g~v~i  878 (1106)
                      ....++|.|+|+++++-.+|.|++++  +++.  +..+.   ........|+|+|+   ++.+.++-..+     +.|..
T Consensus        32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r  109 (352)
T 2ism_A           32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR  109 (352)
T ss_dssp             CEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred             CceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence            46799999999977665589999998  3332  11111   12346889999993   24444444332     67888


Q ss_pred             EEeecc-----e-EEEEec---CcccCeeEEEEecCCCEEEEEcCC-------------CcEEEEeCCCcccccc-----
Q 001295          879 YNVRVD-----E-VKSKLK---GHSKRITGLAFSHALNVLVSSGAD-------------SQLCVWSSDGWEKQKN-----  931 (1106)
Q Consensus       879 wd~~~~-----~-~~~~l~---~h~~~V~~l~~s~d~~~l~s~s~D-------------g~i~vwd~~~~~~~~~-----  931 (1106)
                      |+...+     + ++..+.   +.......|+|.|||.+.++.+..             |.|.-++.+. .....     
T Consensus       110 ~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG-~~p~~npf~~  188 (352)
T 2ism_A          110 LRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEG-EPAPGNPFLG  188 (352)
T ss_dssp             EEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS-SBCTTCTTTT
T ss_pred             EEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCC-CCCCCCcccC
Confidence            887643     1 122233   111123689999999877765432             4455555442 10000     


Q ss_pred             ----eeecccCCCCCCCCCCceEEEcC-CCcEEEE-EeCCeE------EEEecCCce------------------Eeeec
Q 001295          932 ----RFLQIPTGRTPTAQSDTRVQFHQ-DQIHFLV-VHETQL------AIFETTKLE------------------CVKQW  981 (1106)
Q Consensus       932 ----~~~~~~~~~~~~~~~i~~~~~s~-dg~~l~~-~~d~~v------~i~d~~~~~------------------~~~~~  981 (1106)
                          .......++    .....++|+| +|.++++ ...+.+      .+.-+..+.                  .+..+
T Consensus       189 ~~~~~~~i~a~G~----rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~  264 (352)
T 2ism_A          189 RRGARPEVYSLGH----RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW  264 (352)
T ss_dssp             CTTSCTTEEEECC----SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred             CCCCCccEEEEcC----CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec
Confidence                000001111    1357789999 6776666 222221      122222222                  11111


Q ss_pred             ccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEE-eeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEe
Q 001295          982 VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRC-RINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL 1059 (1106)
Q Consensus       982 ~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~ 1059 (1106)
                         .+......++| .+|.++++....+.|...+++...... ......++. .    .-.+..+++.| ||.++++..
T Consensus       265 ---~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~-~----~~rp~~v~~~p-dG~lyv~~~  333 (352)
T 2ism_A          265 ---PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS-G----FGRLREVQVGP-DGALYVTTS  333 (352)
T ss_dssp             ---TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE-S----SCCEEEEEECT-TSCEEEEEC
T ss_pred             ---CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc-c----CCCeeEEEECC-CCcEEEEEe
Confidence               12234567777 467666666566777777765433100 000001111 1    12355888988 677766653

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.35  E-value=0.11  Score=56.24  Aligned_cols=231  Identities=12%  Similarity=0.097  Sum_probs=125.9

Q ss_pred             CCeeEEEEecCCCEEEEEeCCeEEEEEcCCCc-eeeeec---CCCCCeeEEEEecC---CCceEEEeeC---C----CcE
Q 001295          811 EAVPCFALSKNDSYVMSASGGKISLFNMMTFK-TMATFM---PPPPAATFLAFHPQ---DNNIIAIGMD---D----SSI  876 (1106)
Q Consensus       811 ~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~-~~~~~~---~~~~~v~~l~~s~~---d~~~la~g~~---d----g~v  876 (1106)
                      .....++|.|+|+++++-.+|.|++++. +++ .+..+.   ........|+|+|+   ++.+.++-+.   +    ..|
T Consensus        29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v  107 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV  107 (354)
T ss_dssp             SCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred             CCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence            3468899999998777666899999973 443 222221   12345889999993   3555444332   3    567


Q ss_pred             EEEEeecc-------eEE-EEecC-cccCeeEEEEecCCCEEEEEcCC-------------CcEEEEeCCCcccccc---
Q 001295          877 QIYNVRVD-------EVK-SKLKG-HSKRITGLAFSHALNVLVSSGAD-------------SQLCVWSSDGWEKQKN---  931 (1106)
Q Consensus       877 ~iwd~~~~-------~~~-~~l~~-h~~~V~~l~~s~d~~~l~s~s~D-------------g~i~vwd~~~~~~~~~---  931 (1106)
                      ..|+....       +.+ ..+.. .......|+|.|||.++++.+..             |.|.-.+.+.. ....   
T Consensus       108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~-~p~~npf  186 (354)
T 3a9g_A          108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR-PPADNPF  186 (354)
T ss_dssp             EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC-CCTTSSS
T ss_pred             EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC-CCCCCCC
Confidence            77776543       111 22221 11124679999999877775432             34444444321 0000   


Q ss_pred             -eeecccCCCCCCCCCCceEEEcC-CCcEEEE--EeCC--eEEEEecCCce------------------EeeecccCCCC
Q 001295          932 -RFLQIPTGRTPTAQSDTRVQFHQ-DQIHFLV--VHET--QLAIFETTKLE------------------CVKQWVPRESS  987 (1106)
Q Consensus       932 -~~~~~~~~~~~~~~~i~~~~~s~-dg~~l~~--~~d~--~v~i~d~~~~~------------------~~~~~~~~~h~  987 (1106)
                       .......++    .....++|+| +|.++++  +.+.  .|.+..  .+.                  .+..+.  ...
T Consensus       187 ~~~~i~a~G~----rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~--~~~  258 (354)
T 3a9g_A          187 PNSPIWSYGH----RNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTG--SET  258 (354)
T ss_dssp             TTCCEEEECC----SCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECT--TCC
T ss_pred             CCCcEEEEcc----CCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecC--CCC
Confidence             000011122    2457899999 6776666  2222  344332  221                  111110  113


Q ss_pred             CCeeEEEEC-------CCCCEEEEEEcCCeEEEEEcCCc-eeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEe
Q 001295          988 APITHATFS-------CDSQLVYACFLDATVCVFSAANL-KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL 1059 (1106)
Q Consensus       988 ~~v~~l~~s-------~d~~~l~t~s~Dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~ 1059 (1106)
                      .....++|.       .+|.++++....+.|...+++.. +.....   .++. +   ..-.+..+++.| ||.++++..
T Consensus       259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~---~~~~-~---~~~rp~~v~~~p-DG~lyv~~~  330 (354)
T 3a9g_A          259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKIS---TFFK-N---VFGRLRDVVIDD-DGGILISTS  330 (354)
T ss_dssp             CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEE---EECT-T---TSCCEEEEEECT-TSCEEEEEC
T ss_pred             cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCccccee---eecc-C---CCCCeeEEEECC-CCcEEEEEe
Confidence            467788883       57777777666778888888753 322111   1111 1   113456899999 687766654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.29  E-value=0.0016  Score=77.98  Aligned_cols=217  Identities=7%  Similarity=-0.088  Sum_probs=120.6

Q ss_pred             eeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCc---ceeEEeeeeeeccCcCCccccccccCCCCcCeEEEE
Q 001295          343 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR---ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI  419 (1106)
Q Consensus       343 ~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~---~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~  419 (1106)
                      ...++.....+.+++|++.+..|+.+-...+.|..+++.+.   .....                  ++...-.....|+
T Consensus       398 ~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~------------------~i~~~~~~P~gla  459 (699)
T 1n7d_A          398 YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT------------------VISRDIQAPDGLA  459 (699)
T ss_dssp             EECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCC------------------BCCSCC--CCCEE
T ss_pred             ceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEE------------------EEeCCCCCcceEE
Confidence            33334444567889999987766666555688999988751   11000                  1111112345688


Q ss_pred             EccCC-CEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEe-cCCCcEEEEeCCCCceeEEE
Q 001295          420 WSPDG-SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC-GDDKTIKVWDATNGAKQYIF  497 (1106)
Q Consensus       420 ~spdg-~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~  497 (1106)
                      +.+.+ +++++-...+.|.++++.+.....   .+.........|++.|.+..+ +++- +..+.|.+.++... ....+
T Consensus       460 vD~~~g~LY~tD~~~~~I~v~d~dg~~~~~---l~~~~~~~P~giavDp~~g~l-y~td~~~~~~I~~~~~dG~-~~~~l  534 (699)
T 1n7d_A          460 VDWIHSNIYWTDSVLGTVSVADTKGVKRKT---LFREQGSKPRAIVVDPVHGFM-YWTDWGTPAKIKKGGLNGV-DIYSL  534 (699)
T ss_dssp             CCCSSSBCEECCTTTSCEEEEBSSSCCEEE---ECCCSSCCCCCEECCSSSSCC-EECCCSSSCCEEBCCSSSC-CCCEE
T ss_pred             EEeeCCcEEEEeccCCeEEEEecCCCceEE---EEeCCCCCcceEEEccCCCcE-EEcccCCCCeEEEEeCCCC-CeeEE
Confidence            88644 444444556789999987654222   122223456789999977653 3333 23377888876533 22222


Q ss_pred             -eccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCC--CCeeEEEEEecCCCeEEEeeeccceeEEEE
Q 001295          498 -EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP--GRWCTTMAYSADGTRTYQGFRKRSLGVVQF  574 (1106)
Q Consensus       498 -~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~  574 (1106)
                       .........|+|++.. +.++++-+..+.|..+++........+...  ......|++                     
T Consensus       535 ~~~~l~~PnGlavd~~~-~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glav---------------------  592 (699)
T 1n7d_A          535 VTENIQWPNGITLDLLS-GRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV---------------------  592 (699)
T ss_dssp             SCSSCSSCCCEEECTTT-CCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEE---------------------
T ss_pred             EeCCCCCccEEEEeccC-CEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEE---------------------
Confidence             2223445677776543 356666667788999988643222221110  011112222                     


Q ss_pred             cCCCCEEEEEECCCeEEEEECCCcceeEEEc
Q 001295          575 DTTKNRFLAAGDDFSIKFWDMDSVQLLTSID  605 (1106)
Q Consensus       575 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  605 (1106)
                      ..+ ..+++....+.|..++..+++.+..+.
T Consensus       593 d~~-~lywtd~~~~~V~~~d~~~G~~~~~i~  622 (699)
T 1n7d_A          593 FED-KVFWTDIINEAIFSANRLTGSDVNLLA  622 (699)
T ss_dssp             ETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred             ECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence            111 234444566889999988888777664

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.23  E-value=0.064  Score=58.18  Aligned_cols=240  Identities=13%  Similarity=0.121  Sum_probs=127.2

Q ss_pred             CeeEEEEecCCC-EEEEEeCCeEEEEEcCCCcee---eee----cCCCCCeeEEEEecC---CCceEEEeeC-------C
Q 001295          812 AVPCFALSKNDS-YVMSASGGKISLFNMMTFKTM---ATF----MPPPPAATFLAFHPQ---DNNIIAIGMD-------D  873 (1106)
Q Consensus       812 ~v~~l~~s~~~~-~l~~~sdg~i~vwd~~~~~~~---~~~----~~~~~~v~~l~~s~~---d~~~la~g~~-------d  873 (1106)
                      ....++|.|+|+ ++++-..|.|++++... ...   ..+    .........++|+|+   ++.+.++-+.       .
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~   97 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAGK-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG   97 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETTT-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCCC-ceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence            467899999999 66655589999998542 221   111    112345689999993   3544444332       2


Q ss_pred             CcEEEEEeecc-------eEE-EEec-----CcccCeeEEEEecCCCEEEEEcCC-------------CcEEEEeCCCcc
Q 001295          874 SSIQIYNVRVD-------EVK-SKLK-----GHSKRITGLAFSHALNVLVSSGAD-------------SQLCVWSSDGWE  927 (1106)
Q Consensus       874 g~v~iwd~~~~-------~~~-~~l~-----~h~~~V~~l~~s~d~~~l~s~s~D-------------g~i~vwd~~~~~  927 (1106)
                      ..|..|++..+       +.+ ..+.     .|.  -..|+|.|||.+.++.+..             |.|.-.+.+..-
T Consensus        98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~  175 (353)
T 2g8s_A           98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI  175 (353)
T ss_dssp             EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred             eEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence            35666666432       111 1121     132  3579999999776665442             345555554310


Q ss_pred             cccc--------eeecccCCCCCCCCCCceEEEcC-CCcEEEEE--eCCeEEEEecCCceE-------------------
Q 001295          928 KQKN--------RFLQIPTGRTPTAQSDTRVQFHQ-DQIHFLVV--HETQLAIFETTKLEC-------------------  977 (1106)
Q Consensus       928 ~~~~--------~~~~~~~~~~~~~~~i~~~~~s~-dg~~l~~~--~d~~v~i~d~~~~~~-------------------  977 (1106)
                      ....        .......++    .....++|.| +|+++++-  .++.=.|.-+..+..                   
T Consensus       176 p~~npf~~~~~~~~~i~a~G~----rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~  251 (353)
T 2g8s_A          176 PDDNPFIKESGVRAEIWSYGI----RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPE  251 (353)
T ss_dssp             CTTCTTTTSTTSCTTEEEECC----SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTT
T ss_pred             CCCCCCcCCCCCCccEEEEcC----cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCc
Confidence            0000        000001121    2457899999 67766662  222222222222111                   


Q ss_pred             ------------eeecccCCCCCCeeEEEECC-------CCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCC
Q 001295          978 ------------VKQWVPRESSAPITHATFSC-------DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSS 1038 (1106)
Q Consensus       978 ------------~~~~~~~~h~~~v~~l~~s~-------d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1106)
                                  +..|   .+...+..++|..       +|.++++....+.|...+++.++......   ++..    .
T Consensus       252 ~~~~~~~~~~~P~~~~---~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~---~~~~----~  321 (353)
T 2g8s_A          252 AKGEIVAGTEQPVFYW---KDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGR---ILTD----R  321 (353)
T ss_dssp             CCBSSCTTSCCCSEEE---SSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE---ESGG----G
T ss_pred             ccCCCCCCccCCeEEe---CCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEE---cccC----C
Confidence                        0001   1233567788753       57777777677888888887665443221   1111    0


Q ss_pred             CccceEEEEeCCCCCEEEEEeCCCcEEEEeec
Q 001295         1039 NVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1070 (1106)
Q Consensus      1039 ~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~ 1070 (1106)
                      .-.+..+++.| ||.++++.. ++.=+||++.
T Consensus       322 ~~rp~~v~~~p-dG~lyv~td-~~~g~I~ri~  351 (353)
T 2g8s_A          322 GQRIRDVRTGP-DGYLYVLTD-ESSGELLKVS  351 (353)
T ss_dssp             CCCEEEEEECT-TSCEEEEEC-STTEEEEEEE
T ss_pred             CCceeEEEECC-CCcEEEEEe-CCCCEEEEEe
Confidence            12466899999 688666543 2333566664

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.23  E-value=0.17  Score=54.75  Aligned_cols=109  Identities=16%  Similarity=0.124  Sum_probs=63.6

Q ss_pred             CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccC---CC
Q 001295          349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD---GS  425 (1106)
Q Consensus       349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~  425 (1106)
                      .-...+.++|.|+|+ |+++ ..+|.|.+++  +++.....     ++.         +..........|+|+||   +.
T Consensus        29 ~l~~P~~ia~~pdG~-l~V~-e~~g~I~~i~--~g~~~~~~-----~~~---------v~~~g~~~p~gia~~pdf~~~g   90 (352)
T 2ism_A           29 GLEVPWALAFLPDGG-MLIA-ERPGRIRLFR--EGRLSTYA-----ELS---------VYHRGESGLLGLALHPRFPQEP   90 (352)
T ss_dssp             CCSCEEEEEECTTSC-EEEE-ETTTEEEEEE--TTEEEEEE-----ECC---------CCCSTTCSEEEEEECTTTTTSC
T ss_pred             CCCCceEEEEcCCCe-EEEE-eCCCeEEEEE--CCCccEee-----cce---------EeecCCCCceeEEECCCCCCCC
Confidence            445789999999998 4554 5569999998  34321110     100         11222456889999998   55


Q ss_pred             EEEEEeC-C-----CeEEEEEccCCce--eeee-eeec---cccCCeeEEEEcCCCCceEEEEe
Q 001295          426 LFGVAYS-R-----HIVQIYSYHGGDE--VRQH-LEID---AHVGGVNDIAFSHPNKQLCVITC  477 (1106)
Q Consensus       426 ~las~~~-d-----~~v~iwd~~~~~~--~~~~-~~l~---~h~~~V~~~~~s~d~~~~~l~s~  477 (1106)
                      +|.++.. .     +.|..|+...+..  .+.+ ..+.   +.......++|.|||.  +.++.
T Consensus        91 ~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~--Lyv~~  152 (352)
T 2ism_A           91 YVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM--LYVTT  152 (352)
T ss_dssp             EEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC--EEEEC
T ss_pred             EEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC--EEEEE
Confidence            5544432 2     6788888775421  1111 1122   1112346899999996  45553

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.23  E-value=0.29  Score=52.85  Aligned_cols=110  Identities=18%  Similarity=0.120  Sum_probs=63.2

Q ss_pred             CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccC---CC
Q 001295          349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD---GS  425 (1106)
Q Consensus       349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~  425 (1106)
                      .-...+.++|.|+|+ |+++ ..+|.|.++| .+++ .....+.              +..........|+|+|+   +.
T Consensus        27 ~l~~P~~ia~~pdG~-l~V~-e~~g~I~~~d-~~G~-~~~~~~~--------------v~~~g~~g~~gia~~pdf~~~g   88 (354)
T 3a9g_A           27 DLEVPWSIAPLGGGR-YLVT-ERPGRLVLIS-PSGK-KLVASFD--------------VANVGEAGLLGLALHPEFPKKS   88 (354)
T ss_dssp             SCSCEEEEEEEETTE-EEEE-ETTTEEEEEC-SSCE-EEEEECC--------------CCCSTTCSEEEEEECTTTTTSC
T ss_pred             CCCCCeEEEEcCCCe-EEEE-eCCCEEEEEe-CCCc-eEeeccc--------------eeecCCCceeeEEeCCCCCcCC
Confidence            456789999999998 4554 5569999997 3443 1100100              11222346889999997   45


Q ss_pred             EEEEEeC----C----CeEEEEEccCC--ce--eeee-eeec-cccCCeeEEEEcCCCCceEEEEec
Q 001295          426 LFGVAYS----R----HIVQIYSYHGG--DE--VRQH-LEID-AHVGGVNDIAFSHPNKQLCVITCG  478 (1106)
Q Consensus       426 ~las~~~----d----~~v~iwd~~~~--~~--~~~~-~~l~-~h~~~V~~~~~s~d~~~~~l~s~~  478 (1106)
                      +|.++..    +    ..|..|+...+  ..  .+.+ ..+. +.......|+|.|||.  ++++.+
T Consensus        89 ~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~--Lyvt~G  153 (354)
T 3a9g_A           89 WVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM--LYITTG  153 (354)
T ss_dssp             EEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC--EEEECC
T ss_pred             EEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc--EEEEEC
Confidence            5544432    3    56778887654  11  1111 1121 1112347799999997  555543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.04  E-value=0.17  Score=53.71  Aligned_cols=228  Identities=9%  Similarity=0.032  Sum_probs=119.1

Q ss_pred             CEEEEEe---CCeEEEEEcCCCceeee--ecCCCCCeeEEEEecCCCceEEEeeCC----CcEEEEEeecceE--EEEec
Q 001295          823 SYVMSAS---GGKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDD----SSIQIYNVRVDEV--KSKLK  891 (1106)
Q Consensus       823 ~~l~~~s---dg~i~vwd~~~~~~~~~--~~~~~~~v~~l~~s~~d~~~la~g~~d----g~v~iwd~~~~~~--~~~l~  891 (1106)
                      .+++.|+   ...+.+||..+.+....  +........++.  - ++++++.|+.+    ..+.+||..+.+-  +..+.
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~-~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p   89 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--W-DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP   89 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--E-TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--E-CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence            3455554   25799999887654322  222122222222  3 67788888765    5788899887543  22222


Q ss_pred             CcccCeeEEEEecCCCEEEEEcCC------CcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-e-
Q 001295          892 GHSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H-  963 (1106)
Q Consensus       892 ~h~~~V~~l~~s~d~~~l~s~s~D------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~-  963 (1106)
                      .....-..+  .-++++++.|+.+      ..+.+||..+.+=   ..+.....  +  ..-.+++. -+++.++.+ . 
T Consensus        90 ~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W---~~~~~~p~--~--r~~~~~~~-~~~~iyv~GG~~  159 (306)
T 3ii7_A           90 TPRDSLAAC--AAEGKIYTSGGSEVGNSALYLFECYDTRTESW---HTKPSMLT--Q--RCSHGMVE-ANGLIYVCGGSL  159 (306)
T ss_dssp             SCCBSCEEE--EETTEEEEECCBBTTBSCCCCEEEEETTTTEE---EEECCCSS--C--CBSCEEEE-ETTEEEEECCEE
T ss_pred             ccccceeEE--EECCEEEEECCCCCCCcEeeeEEEEeCCCCce---EeCCCCcC--C--cceeEEEE-ECCEEEEECCCC
Confidence            111111222  2367778888765      4588899887431   11211111  0  11122222 366666653 2 


Q ss_pred             --------CCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcC-----CeEEEEEcCCceeEEeeCCCcc
Q 001295          964 --------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRINPSAY 1030 (1106)
Q Consensus       964 --------d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~D-----g~i~vwd~~~~~~~~~~~~~~~ 1030 (1106)
                              -..+.+||..+.+-...-........-..+.+  ++++++.|+.+     ..+.+||..+.+-...-.    
T Consensus       160 ~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~----  233 (306)
T 3ii7_A          160 GNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSP----  233 (306)
T ss_dssp             SCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCC----
T ss_pred             CCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCC----
Confidence                    34588999988754333211111111122222  67777777654     358999998876543211    


Q ss_pred             cCCCCCCCCccceEEEEeCCCCCEEEEEeCC-----CcEEEEeecCCCCccCC
Q 001295         1031 LPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-----GGVHVFEPLESEGKWGV 1078 (1106)
Q Consensus      1031 ~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~D-----g~v~vW~~~~~~~~~~~ 1078 (1106)
                      ++...     ....++..  ++.+++.|+.+     ..+.++|+.+.+  |..
T Consensus       234 ~p~~r-----~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~--W~~  277 (306)
T 3ii7_A          234 MPWKG-----VTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK--WVA  277 (306)
T ss_dssp             CSCCB-----SCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE--EEE
T ss_pred             CCCCc-----cceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe--EEe
Confidence            22221     11133333  46788888865     457777877755  544

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.02  E-value=0.02  Score=59.80  Aligned_cols=168  Identities=11%  Similarity=0.061  Sum_probs=107.2

Q ss_pred             cccCeeEEEEecC-CCEEEEEcCCCcEEEEeCCCcccccceeecccCCCC---CCCCCCceEEE---cCCCcEEEEEe--
Q 001295          893 HSKRITGLAFSHA-LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT---PTAQSDTRVQF---HQDQIHFLVVH--  963 (1106)
Q Consensus       893 h~~~V~~l~~s~d-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~---s~dg~~l~~~~--  963 (1106)
                      ...---++.|.+. +.++++.-..++|..|+...+....   + ...+..   .....+..+.+   .|+++++++..  
T Consensus        11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~---~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~   86 (334)
T 2p9w_A           11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFN---V-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNA   86 (334)
T ss_dssp             TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEE---E-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEET
T ss_pred             cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEE---E-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccc
Confidence            3334457889874 5555555589999999987543211   1 122210   11123478999   68988888644  


Q ss_pred             ------------CCeEEEEecC---CceEeeecccCCC-----------CCCeeEEEECCCCCEEEEEEcC-CeEEEEEc
Q 001295          964 ------------ETQLAIFETT---KLECVKQWVPRES-----------SAPITHATFSCDSQLVYACFLD-ATVCVFSA 1016 (1106)
Q Consensus       964 ------------d~~v~i~d~~---~~~~~~~~~~~~h-----------~~~v~~l~~s~d~~~l~t~s~D-g~i~vwd~ 1016 (1106)
                                  +..|..||+.   +++.+........           ......++..++|+..++++.- +.|...+.
T Consensus        87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p  166 (334)
T 2p9w_A           87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA  166 (334)
T ss_dssp             TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT
T ss_pred             ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC
Confidence                        5789999999   7776544332111           1247899999999999989888 88777776


Q ss_pred             CCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeec
Q 001295         1017 ANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1070 (1106)
Q Consensus      1017 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~ 1070 (1106)
                      +... +..+...  .+.........  .|+++| |+++|++...+|.|..+|+.
T Consensus       167 dG~~-~~~~~~~--~~~~~~~~G~n--GIv~~p-dg~~Liv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          167 DGKT-VSTFAWE--SGNGGQRPGYS--GITFDP-HSNKLIAFGGPRALTAFDVS  214 (334)
T ss_dssp             TSCC-EEEEEEC--CCCSSSCCSCS--EEEEET-TTTEEEEESSSSSEEEEECS
T ss_pred             CCCE-Eeeeeec--CCCcccccCcc--eEEEeC-CCCEEEEEcCCCeEEEEcCC
Confidence            5442 2222100  11111111133  899999 68888888779999999987

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.96  E-value=0.099  Score=55.30  Aligned_cols=232  Identities=11%  Similarity=0.096  Sum_probs=118.7

Q ss_pred             CCCEEEEEe-C------CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCC-----CcEEEEEeecce---
Q 001295          821 NDSYVMSAS-G------GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD-----SSIQIYNVRVDE---  885 (1106)
Q Consensus       821 ~~~~l~~~s-d------g~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~d-----g~v~iwd~~~~~---  885 (1106)
                      ++.+++.|+ .      ..+.+||..+.+....-..........+... ++++++.|+.+     ..+.+||..+.+   
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~   92 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL-HDRIYVIGGYDGRSRLSSVECLDYTADEDGV   92 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTCCTTCC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE-CCEEEEEcCCCCCccCceEEEEECCCCCCCe
Confidence            445555554 2      3588999887653322111111111122223 67788888865     368999987654   


Q ss_pred             --EEEEecCcccCeeEEEEecCCCEEEEEcCCC-----cEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcE
Q 001295          886 --VKSKLKGHSKRITGLAFSHALNVLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH  958 (1106)
Q Consensus       886 --~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~  958 (1106)
                        .+..+......-.++  ..++++++.|+.++     .+.+||..+.+=   ..+......    ..-..++ .-+++.
T Consensus        93 W~~~~~~p~~r~~~~~~--~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W---~~~~~~p~~----r~~~~~~-~~~~~i  162 (301)
T 2vpj_A           93 WYSVAPMNVRRGLAGAT--TLGDMIYVSGGFDGSRRHTSMERYDPNIDQW---SMLGDMQTA----REGAGLV-VASGVI  162 (301)
T ss_dssp             CEEECCCSSCCBSCEEE--EETTEEEEECCBCSSCBCCEEEEEETTTTEE---EEEEECSSC----CBSCEEE-EETTEE
T ss_pred             eEECCCCCCCccceeEE--EECCEEEEEcccCCCcccceEEEEcCCCCeE---EECCCCCCC----cccceEE-EECCEE
Confidence              332222211111222  23677777777543     578888876432   112111110    1112222 236666


Q ss_pred             EEEE-eC-----CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcC-----CeEEEEEcCCceeEEeeCC
Q 001295          959 FLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRINP 1027 (1106)
Q Consensus       959 l~~~-~d-----~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~D-----g~i~vwd~~~~~~~~~~~~ 1027 (1106)
                      ++.+ .+     ..+.+||..+.+-...-........-..+.+  ++++++.|+.+     ..|.+||+.+.+-...-. 
T Consensus       163 yv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~-  239 (301)
T 2vpj_A          163 YCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTS-  239 (301)
T ss_dssp             EEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECC-
T ss_pred             EEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCC-
Confidence            6663 32     4689999987765433211111111122222  67777777764     468999998876553321 


Q ss_pred             CcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCC-----cEEEEeecCCCCccCC
Q 001295         1028 SAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG-----GVHVFEPLESEGKWGV 1078 (1106)
Q Consensus      1028 ~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg-----~v~vW~~~~~~~~~~~ 1078 (1106)
                         ++....   -.  .++..  ++++++.|+.++     .+.++|+.+.+  |..
T Consensus       240 ---~p~~r~---~~--~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~  283 (301)
T 2vpj_A          240 ---MTTPRC---YV--GATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS--WEV  283 (301)
T ss_dssp             ---CSSCCB---SC--EEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE--EEE
T ss_pred             ---CCCccc---ce--eEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe--EEE
Confidence               222210   11  23333  467888887663     46777776644  543

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.91  E-value=0.17  Score=53.51  Aligned_cols=229  Identities=12%  Similarity=0.112  Sum_probs=118.1

Q ss_pred             CCEEEEEe-C----CeEEEEEcCCCceeee--ecCCCCCeeEEEEecCCCceEEEeeCCC-----cEEEEEeecceE--E
Q 001295          822 DSYVMSAS-G----GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVDEV--K  887 (1106)
Q Consensus       822 ~~~l~~~s-d----g~i~vwd~~~~~~~~~--~~~~~~~v~~l~~s~~d~~~la~g~~dg-----~v~iwd~~~~~~--~  887 (1106)
                      +.+++.|+ +    ..+..||..+.+....  +......- +++. - ++++++.|+.++     .+.+||..+.+-  +
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~   92 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRA-GMVY-M-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV   92 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-E-TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccc-eEEE-E-CCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence            44555554 2    4588899887553322  22111111 2222 2 677888887653     588899876542  2


Q ss_pred             EEecCcccCeeEEEEecCCCEEEEEcCCC-----cEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE
Q 001295          888 SKLKGHSKRITGLAFSHALNVLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV  962 (1106)
Q Consensus       888 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~  962 (1106)
                      ..+......-.++.  -++++++.|+.++     .+.+||+.+.+   ...+.....  +  ..-.+++. -+++.++.+
T Consensus        93 ~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~---W~~~~~~p~--~--r~~~~~~~-~~~~iyv~G  162 (302)
T 2xn4_A           93 ANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNE---WFHVAPMNT--R--RSSVGVGV-VGGLLYAVG  162 (302)
T ss_dssp             CCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTE---EEEECCCSS--C--CBSCEEEE-ETTEEEEEC
T ss_pred             CCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCe---EeecCCCCC--c--ccCceEEE-ECCEEEEEe
Confidence            22221111111222  3677788887653     47788877643   122211111  0  11122222 356666653


Q ss_pred             -e-------CCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcC-----CeEEEEEcCCceeEEeeCCCc
Q 001295          963 -H-------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRINPSA 1029 (1106)
Q Consensus       963 -~-------d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~D-----g~i~vwd~~~~~~~~~~~~~~ 1029 (1106)
                       .       -..+.+||..+.+-...-........-..+.+  ++++++.|+.+     ..+.+||..+.+-...-.   
T Consensus       163 G~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~---  237 (302)
T 2xn4_A          163 GYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVAD---  237 (302)
T ss_dssp             CEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECC---
T ss_pred             CCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCC---
Confidence             2       24588999987754433111111111122222  67777777765     368999998876543321   


Q ss_pred             ccCCCCCCCCccceEEEEeCCCCCEEEEEeCCC-----cEEEEeecCCCCccCC
Q 001295         1030 YLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG-----GVHVFEPLESEGKWGV 1078 (1106)
Q Consensus      1030 ~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg-----~v~vW~~~~~~~~~~~ 1078 (1106)
                       ++.....   .  .++..  ++.+++.|+.++     .+.++|+.+.+  |..
T Consensus       238 -~~~~r~~---~--~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~  281 (302)
T 2xn4_A          238 -MNMCRRN---A--GVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDK--WTV  281 (302)
T ss_dssp             -CSSCCBS---C--EEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE--EEE
T ss_pred             -CCCcccc---C--eEEEE--CCEEEEECCcCCCcccccEEEEcCCCCe--EEE
Confidence             2221111   1  23333  467888888664     47888887755  654

>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A

Probab=96.91  E-value=0.00056  Score=54.52  Aligned_cols=36  Identities=31%  Similarity=0.420  Sum_probs=32.6

Q ss_pred             CcchhHHHHHHHHHHHhHhcHHHHHHHHHHhhCCCc
Q 001295            1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFF   36 (1106)
Q Consensus         1 ~~~~~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~~   36 (1106)
                      |+--+.||..||+.||+|.||..||-+|++||++.-
T Consensus         1 msitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~   36 (90)
T 2xtc_A            1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQ   36 (90)
T ss_dssp             -CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGG
T ss_pred             CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCc
Confidence            667789999999999999999999999999999864

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.81  E-value=0.068  Score=57.44  Aligned_cols=108  Identities=11%  Similarity=0.076  Sum_probs=80.6

Q ss_pred             EEEecCCCEEEEEeCCeEEEEEcCCCceeeeecCC----CCCeeEEEEecCCCceEEEeeCCCcEEEEEeecce------
Q 001295          816 FALSKNDSYVMSASGGKISLFNMMTFKTMATFMPP----PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE------  885 (1106)
Q Consensus       816 l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~----~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~------  885 (1106)
                      .....+|.-++.+.++.||.-++......+.+...    -..|..+..+| +|.+||..+ +..|.|-.+..+.      
T Consensus        26 ~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~  103 (452)
T 3pbp_A           26 IFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDV  103 (452)
T ss_dssp             EEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCH
T ss_pred             EEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCccc
Confidence            45567888999999999999998854444444433    23688999999 999999886 5588998886321      


Q ss_pred             ------EEEEecC------cccCeeEEEEecC---CCEEEEEcCCCcEEEEeCCC
Q 001295          886 ------VKSKLKG------HSKRITGLAFSHA---LNVLVSSGADSQLCVWSSDG  925 (1106)
Q Consensus       886 ------~~~~l~~------h~~~V~~l~~s~d---~~~l~s~s~Dg~i~vwd~~~  925 (1106)
                            ..+.+.-      ...+|..+.|+|-   +..|++-..|++|++||+..
T Consensus       104 ~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~  158 (452)
T 3pbp_A          104 SIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN  158 (452)
T ss_dssp             HHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred             ccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence                  0112221      3567999999986   46899999999999999986

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.59  E-value=0.22  Score=52.60  Aligned_cols=188  Identities=8%  Similarity=0.024  Sum_probs=99.0

Q ss_pred             cCCCEEEEEe-C-----CeEEEEEcCCCc---eeee--ecCCCCCeeEEEEecCCCceEEEeeCCC-----cEEEEEeec
Q 001295          820 KNDSYVMSAS-G-----GKISLFNMMTFK---TMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRV  883 (1106)
Q Consensus       820 ~~~~~l~~~s-d-----g~i~vwd~~~~~---~~~~--~~~~~~~v~~l~~s~~d~~~la~g~~dg-----~v~iwd~~~  883 (1106)
                      .++++++.|+ +     ..+.+||..+.+   ....  +........++.  . ++++++.|+.++     .+.+||..+
T Consensus        61 ~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~--~-~~~lyv~GG~~~~~~~~~~~~~d~~~  137 (301)
T 2vpj_A           61 LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT--L-GDMIYVSGGFDGSRRHTSMERYDPNI  137 (301)
T ss_dssp             ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE--E-TTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred             ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE--E-CCEEEEEcccCCCcccceEEEEcCCC
Confidence            3667777765 3     358999988765   3222  222222222222  2 677888887543     588899876


Q ss_pred             ce--EEEEecCcccCeeEEEEecCCCEEEEEcCC-----CcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCC
Q 001295          884 DE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ  956 (1106)
Q Consensus       884 ~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg  956 (1106)
                      .+  .+..+......  ..+..-++++++.|+.+     ..+.+||+.+.+   ...+.....  +  ..-..++ .-++
T Consensus       138 ~~W~~~~~~p~~r~~--~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~---W~~~~~~p~--~--r~~~~~~-~~~~  207 (301)
T 2vpj_A          138 DQWSMLGDMQTAREG--AGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGH---WTNVTPMAT--K--RSGAGVA-LLND  207 (301)
T ss_dssp             TEEEEEEECSSCCBS--CEEEEETTEEEEECCBCSSCBCCCEEEEETTTTE---EEEECCCSS--C--CBSCEEE-EETT
T ss_pred             CeEEECCCCCCCccc--ceEEEECCEEEEECCCCCCcccceEEEEeCCCCc---EEeCCCCCc--c--cccceEE-EECC
Confidence            54  33333211111  11222367788887765     358889987743   222211111  0  1112222 2356


Q ss_pred             cEEEEE-e-----CCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcC-----CeEEEEEcCCceeE
Q 001295          957 IHFLVV-H-----ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLR 1022 (1106)
Q Consensus       957 ~~l~~~-~-----d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~D-----g~i~vwd~~~~~~~ 1022 (1106)
                      +.++.+ .     ...+.+||+.+.+-...-........-..+.+  ++++++.|+.+     ..|.+||..+.+-.
T Consensus       208 ~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  282 (301)
T 2vpj_A          208 HIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDSWE  282 (301)
T ss_dssp             EEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred             EEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence            666663 3     24699999988765433221111111122222  67777777765     35788888876543

>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1

Probab=96.52  E-value=0.0033  Score=57.98  Aligned_cols=82  Identities=15%  Similarity=0.280  Sum_probs=66.6

Q ss_pred             cccchhhhHHHHHHHHHHHhCCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccccccchhhccCCC-------chHH
Q 001295           67 RYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD-------TKSA  139 (1106)
Q Consensus        67 ~~~~~~~~~i~~q~~lEll~~~~~~~A~~~l~~~l~~l~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~-------~~~~  139 (1106)
                      ++.+ ++|+|+.|.||||+.+|+.++|..+|++.-..++..+.+.+++|+.+....++.+++....++.       .+.+
T Consensus        48 EL~~-lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~~~~l~~n~~~~~fr~~Ky~I~ls~~s  126 (156)
T 2nxp_A           48 ELSQ-LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDS  126 (156)
T ss_dssp             HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHH
T ss_pred             HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhcHHHHHHHhCCeEEEECHHH
Confidence            4455 9999999999999999999999999998776676778999999999998888888777776666       3455


Q ss_pred             HHHHHHHHHh
Q 001295          140 RSIMLVELKK  149 (1106)
Q Consensus       140 r~~l~~~l~~  149 (1106)
                      -..|+..|++
T Consensus       127 ~~lL~~fL~~  136 (156)
T 2nxp_A          127 YQLLKRHLQE  136 (156)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHHH
Confidence            6666666654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.51  E-value=0.31  Score=51.58  Aligned_cols=231  Identities=12%  Similarity=0.091  Sum_probs=118.6

Q ss_pred             cCCCEEEEEe-C----CeEEEEEcCCCceeee--ecCCCCCeeEEEEecCCCceEEEeeC----C-----CcEEEEEeec
Q 001295          820 KNDSYVMSAS-G----GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMD----D-----SSIQIYNVRV  883 (1106)
Q Consensus       820 ~~~~~l~~~s-d----g~i~vwd~~~~~~~~~--~~~~~~~v~~l~~s~~d~~~la~g~~----d-----g~v~iwd~~~  883 (1106)
                      -++.+++.|+ +    ..+.+||..+.+....  +....... +++. . ++++++.|+.    +     ..+.+||..+
T Consensus        23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~   99 (308)
T 1zgk_A           23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCV-V-GGLLYAVGGRNNSPDGNTDSSALDCYNPMT   99 (308)
T ss_dssp             CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-E-TTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred             CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEE-E-CCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence            3556666665 2    4688999887654322  11111111 2222 2 6778888876    2     3688899877


Q ss_pred             ceE--EEEecCcccCeeEEEEecCCCEEEEEcCC-----CcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCC
Q 001295          884 DEV--KSKLKGHSKRITGLAFSHALNVLVSSGAD-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ  956 (1106)
Q Consensus       884 ~~~--~~~l~~h~~~V~~l~~s~d~~~l~s~s~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg  956 (1106)
                      .+-  +..+......-..+.  -++++++.|+.+     ..+.+||..+.+=   ..+.....  .  ..-.+++.. ++
T Consensus       100 ~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W---~~~~~~p~--~--r~~~~~~~~-~~  169 (308)
T 1zgk_A          100 NQWSPCAPMSVPRNRIGVGV--IDGHIYAVGGSHGCIHHNSVERYEPERDEW---HLVAPMLT--R--RIGVGVAVL-NR  169 (308)
T ss_dssp             TEEEECCCCSSCCBTCEEEE--ETTEEEEECCEETTEECCCEEEEETTTTEE---EECCCCSS--C--CBSCEEEEE-TT
T ss_pred             CeEeECCCCCcCccccEEEE--ECCEEEEEcCCCCCcccccEEEECCCCCeE---eECCCCCc--c--ccceEEEEE-CC
Confidence            542  222221111112222  267777777644     3588888876431   11111110  0  111222222 56


Q ss_pred             cEEEEE-eC-----CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcC-----CeEEEEEcCCceeEEee
Q 001295          957 IHFLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRI 1025 (1106)
Q Consensus       957 ~~l~~~-~d-----~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~D-----g~i~vwd~~~~~~~~~~ 1025 (1106)
                      +.++.+ .+     ..+.+||..+.+-...-........-..+.+  ++++++.|+.+     ..+.+||+.+.+-...-
T Consensus       170 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~  247 (308)
T 1zgk_A          170 LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVA  247 (308)
T ss_dssp             EEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECC
T ss_pred             EEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECC
Confidence            666663 32     4689999987754332111111111222233  67777777765     45999999887654322


Q ss_pred             CCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCC-----cEEEEeecCCCCccCC
Q 001295         1026 NPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG-----GVHVFEPLESEGKWGV 1078 (1106)
Q Consensus      1026 ~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg-----~v~vW~~~~~~~~~~~ 1078 (1106)
                      .    ++.....   .  .++..  ++++++.|+.++     .+.++|+.+.+  |..
T Consensus       248 ~----~p~~r~~---~--~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~  292 (308)
T 1zgk_A          248 P----MKHRRSA---L--GITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT--WSE  292 (308)
T ss_dssp             C----CSSCCBS---C--EEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE--EEE
T ss_pred             C----CCCCccc---e--EEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE--Eee
Confidence            1    2222101   1  33333  467888887653     46777777654  543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.36  E-value=0.61  Score=49.47  Aligned_cols=224  Identities=11%  Similarity=0.117  Sum_probs=114.0

Q ss_pred             CCeEEEEEcCCCceee-eecCCCCCeeEEEEecCCCceEEEeeC-----C------CcEEEEEeecceE--EEEecCccc
Q 001295          830 GGKISLFNMMTFKTMA-TFMPPPPAATFLAFHPQDNNIIAIGMD-----D------SSIQIYNVRVDEV--KSKLKGHSK  895 (1106)
Q Consensus       830 dg~i~vwd~~~~~~~~-~~~~~~~~v~~l~~s~~d~~~la~g~~-----d------g~v~iwd~~~~~~--~~~l~~h~~  895 (1106)
                      ...+.+||..+.+-.. .+..........+... ++++++.|+.     .      ..+.+||..+.+-  +..+.....
T Consensus        12 G~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~   90 (315)
T 4asc_A           12 EEGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRC   90 (315)
T ss_dssp             TTEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEE
T ss_pred             CCceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchh
Confidence            3679999998766433 1222222333334444 7788888873     1      1277888877542  222211111


Q ss_pred             CeeEEEEecCCCEEEEEcCC--------CcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-e-C-
Q 001295          896 RITGLAFSHALNVLVSSGAD--------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H-E-  964 (1106)
Q Consensus       896 ~V~~l~~s~d~~~l~s~s~D--------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~-d-  964 (1106)
                      .- +++. -++++++.|+.+        ..+.+||..+.+   ...+.....    ...-.++ ..-+++.++.+ . + 
T Consensus        91 ~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~---W~~~~~~p~----~r~~~~~-~~~~~~iyv~GG~~~~  160 (315)
T 4asc_A           91 LF-GLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFK---WGESDPLPY----VVYGHTV-LSHMDLVYVIGGKGSD  160 (315)
T ss_dssp             SC-EEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTE---EEECCCCSS----CCBSCEE-EEETTEEEEECCBCTT
T ss_pred             ce-eEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCc---EeECCCCCC----cccceeE-EEECCEEEEEeCCCCC
Confidence            11 1222 266777777742        458888887743   111111111    0111222 33466666664 3 2 


Q ss_pred             ----CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCC-----eEEEEEcCCceeEEeeCCCcccCCCC
Q 001295          965 ----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-----TVCVFSAANLKLRCRINPSAYLPAGV 1035 (1106)
Q Consensus       965 ----~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~ 1035 (1106)
                          ..+.+||..+.+-...-........-.++.  -++++++.|+.++     .+.+||..+.+-...-.    ++...
T Consensus       161 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~r  234 (315)
T 4asc_A          161 RKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA----FPQER  234 (315)
T ss_dssp             SCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECC----CSSCC
T ss_pred             CcccceEEEEeCCCCeEEECCCCCCchhceEEEE--ECCEEEEEeccCCCCccceEEEEECCCCeEEECCC----CCCcc
Confidence                468999998775433221111111112222  2677777777654     58899998876544322    22221


Q ss_pred             CCCCccceEEEEeCCCCCEEEEEeCCC--------------cEEEEeecCCCCccCCC
Q 001295         1036 SSSNVHPLVIAAHPQEPNEFALGLSDG--------------GVHVFEPLESEGKWGVP 1079 (1106)
Q Consensus      1036 ~~~~v~~~~~~~~~~d~~~l~t~~~Dg--------------~v~vW~~~~~~~~~~~~ 1079 (1106)
                      ..   .  +++..  ++++++.|+.++              .+.++|+.+.+  |...
T Consensus       235 ~~---~--~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~--W~~~  283 (315)
T 4asc_A          235 SS---L--SLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK--WEGV  283 (315)
T ss_dssp             BS---C--EEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE--EEEE
T ss_pred             cc---e--eEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCCh--hhhh
Confidence            11   1  23333  467888888643              35566766654  5543

>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1

Probab=96.31  E-value=0.0021  Score=57.65  Aligned_cols=81  Identities=14%  Similarity=0.214  Sum_probs=63.4

Q ss_pred             cccchhhhHHHHHHHHHHHhCCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccccccchhhccCCC-------chHH
Q 001295           67 RYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD-------TKSA  139 (1106)
Q Consensus        67 ~~~~~~~~~i~~q~~lEll~~~~~~~A~~~l~~~l~~l~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~-------~~~~  139 (1106)
                      ++.+ ++|+|+.|.||||+.+|+.++|..++.+.-..+... .+.+++|+.+....++.+++....+++       .+.+
T Consensus        29 EL~~-lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e~l~~n~~~~~fr~nKy~I~ls~~s  106 (138)
T 2j4b_A           29 DLLP-LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYA  106 (138)
T ss_dssp             HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHHHHHHCHHHHHHHHSCEEEEEEHHH
T ss_pred             HHHH-HHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHHHHhhCHHHHHHHhCCeEEEECHHH
Confidence            3455 999999999999999999999999999877777676 899999999888888877766554544       4566


Q ss_pred             HHHHHHHHHh
Q 001295          140 RSIMLVELKK  149 (1106)
Q Consensus       140 r~~l~~~l~~  149 (1106)
                      -..|+..|++
T Consensus       107 ~~lL~~fL~~  116 (138)
T 2j4b_A          107 FDLLINFLEE  116 (138)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6666666665

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.31  E-value=1.5  Score=46.69  Aligned_cols=233  Identities=13%  Similarity=0.109  Sum_probs=121.8

Q ss_pred             CCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCcee--eee----cCCCCCeeEEEEecC---CCceEEEe--eCCCcEE
Q 001295          810 EEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM--ATF----MPPPPAATFLAFHPQ---DNNIIAIG--MDDSSIQ  877 (1106)
Q Consensus       810 ~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~--~~~----~~~~~~v~~l~~s~~---d~~~la~g--~~dg~v~  877 (1106)
                      -.....++|.|||.++++-. .|.|++++..+++..  ..+    .........|+|+|+   ++.+.++-  ..++.|.
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~  110 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV  110 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence            34578999999999888887 799999987655432  112    122445789999983   34444432  2345666


Q ss_pred             EEEeecc----------eEE-EEec---CcccCeeEEEEecCCCEEEEEcC-------------CCcEEEEeCCCccccc
Q 001295          878 IYNVRVD----------EVK-SKLK---GHSKRITGLAFSHALNVLVSSGA-------------DSQLCVWSSDGWEKQK  930 (1106)
Q Consensus       878 iwd~~~~----------~~~-~~l~---~h~~~V~~l~~s~d~~~l~s~s~-------------Dg~i~vwd~~~~~~~~  930 (1106)
                      -|.+..+          +.+ ..+.   .|.  -..|+|.|||.+.++.+.             -|.|.-.+.+..-...
T Consensus       111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~--g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~  188 (347)
T 3das_A          111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHN--GGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPG  188 (347)
T ss_dssp             EEEBCTTSCTTCCBCCCEEEEEEECCCSSCC--CCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTT
T ss_pred             EEEeCCCCcccccCCCcEEEEEcCCCCCCcc--CccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCC
Confidence            6665441          111 2222   243  357999999988887653             2444434443210000


Q ss_pred             c---eeecccCCCCCCCCCCceEEEcCCCcEEEE--EeCCeEEEEecCCceE------------------eeecccCCCC
Q 001295          931 N---RFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHETQLAIFETTKLEC------------------VKQWVPRESS  987 (1106)
Q Consensus       931 ~---~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~--~~d~~v~i~d~~~~~~------------------~~~~~~~~h~  987 (1106)
                      .   .......++    .....++|+|+|.++++  +.++.-.|--+..+..                  +..|.  .+.
T Consensus       189 nPf~~~~i~a~G~----RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~--~~~  262 (347)
T 3das_A          189 NPFPGSPVYSYGH----RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWS--TDE  262 (347)
T ss_dssp             CSSTTCCEEEBCC----SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEEC--TTT
T ss_pred             CCCCCCeEEeeCC----CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecC--CCC
Confidence            0   000111232    24678999999988777  3443333333332221                  11111  111


Q ss_pred             CCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEE
Q 001295          988 APITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG 1058 (1106)
Q Consensus       988 ~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~ 1058 (1106)
                      .....|+|. +|..++..-..+.|....+.......  ....++. +   ..-.+..+...| ||.++++.
T Consensus       263 ~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~--~~e~~l~-~---~~gR~~dv~~~p-DG~lyv~t  325 (347)
T 3das_A          263 ASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAA--DPQAFLE-G---EYGRLRTVAPAG-GDKLWLVT  325 (347)
T ss_dssp             CCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESS--CCEEEST-T---TSSCEEEEEEEE-TTEEEEEE
T ss_pred             CCCcceEEE-cCceeeccccCCEEEEEEecCCceec--ceEEeec-C---CCCCccEEEECC-CCcEEEEE
Confidence            345667775 45555555555556555665443211  0111121 1   112344777777 67665554

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.28  E-value=0.99  Score=50.49  Aligned_cols=104  Identities=14%  Similarity=0.125  Sum_probs=63.1

Q ss_pred             CCeeEEEEecCCCEEEEEeC-CeEEEEEcCCCcee--eeecC------CCCCeeEEEEecC---CCceEEEeeC------
Q 001295          811 EAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTM--ATFMP------PPPAATFLAFHPQ---DNNIIAIGMD------  872 (1106)
Q Consensus       811 ~~v~~l~~s~~~~~l~~~sd-g~i~vwd~~~~~~~--~~~~~------~~~~v~~l~~s~~---d~~~la~g~~------  872 (1106)
                      .....++|.|+|+++++-.. +.|++++..++...  ..+..      .......|+|+|+   ++.+.++-+.      
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            35679999999998887765 47988886555432  22221      2345779999994   4444444332      


Q ss_pred             ------CCcEEEEEeecc-------eEE-EEecC-cccCeeEEEEecCCCEEEEEcC
Q 001295          873 ------DSSIQIYNVRVD-------EVK-SKLKG-HSKRITGLAFSHALNVLVSSGA  914 (1106)
Q Consensus       873 ------dg~v~iwd~~~~-------~~~-~~l~~-h~~~V~~l~~s~d~~~l~s~s~  914 (1106)
                            ...|.-|+...+       +.+ ..+.. .......|+|.|||.+.++.+.
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                  235666665431       112 12221 1123578999999998887654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.24  E-value=0.056  Score=58.07  Aligned_cols=126  Identities=16%  Similarity=0.191  Sum_probs=78.9

Q ss_pred             CCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEE-----e--eeeeeccCcCCccccccccCCCCcCeEEEEEcc-
Q 001295          351 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL-----R--NFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-  422 (1106)
Q Consensus       351 ~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~-----~--~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-  422 (1106)
                      +.|..+..||+|++ ||.-+ +..|.|-.+..+.....     .  ..+.+.+..        .......+|..+.|+| 
T Consensus        66 ~~i~qlvlSpsG~l-LAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~--------~~~~~~s~I~qVlWHPl  135 (452)
T 3pbp_A           66 DDTFHVISSTSGDL-LCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE--------EEVGPKSSIKKVLFHPK  135 (452)
T ss_dssp             CTTCEEEECTTSSE-EEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG--------CC--CCCCEEEEEECTT
T ss_pred             CceeEEEECCCCCE-EEEec-CCeEEEEEecCccccCcccccccccceeEEEcCC--------cccCCCCceeEEEeccc
Confidence            37889999999996 55543 47899998874432211     0  011121110        0122467899999999 


Q ss_pred             --CCCEEEEEeCCCeEEEEEccCCceeee-------eeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEE
Q 001295          423 --DGSLFGVAYSRHIVQIYSYHGGDEVRQ-------HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  486 (1106)
Q Consensus       423 --dg~~las~~~d~~v~iwd~~~~~~~~~-------~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw  486 (1106)
                        .|..|++-..|++|++||+........       ...+..+...|.+++|..++-.+++++....|.|+-.
T Consensus       136 ~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          136 SYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             BGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             cCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence              567899999999999999986321111       0112223356888888887766666666666666543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.23  E-value=0.35  Score=51.12  Aligned_cols=188  Identities=10%  Similarity=0.055  Sum_probs=99.6

Q ss_pred             cCCCEEEEEe-C----CeEEEEEcCCCceeee--ecCCCCCeeEEEEecCCCceEEEeeCC------CcEEEEEeecceE
Q 001295          820 KNDSYVMSAS-G----GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDD------SSIQIYNVRVDEV  886 (1106)
Q Consensus       820 ~~~~~l~~~s-d----g~i~vwd~~~~~~~~~--~~~~~~~v~~l~~s~~d~~~la~g~~d------g~v~iwd~~~~~~  886 (1106)
                      -++++++.|+ +    ..+.+||..+.+....  +........++.  - ++++++.|+.+      ..+.+||..+.+-
T Consensus        54 ~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W  130 (306)
T 3ii7_A           54 WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACA--A-EGKIYTSGGSEVGNSALYLFECYDTRTESW  130 (306)
T ss_dssp             ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEE--E-TTEEEEECCBBTTBSCCCCEEEEETTTTEE
T ss_pred             ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEE--E-CCEEEEECCCCCCCcEeeeEEEEeCCCCce
Confidence            3666777765 3    5688999887654332  221112222222  2 67788888765      4688999887543


Q ss_pred             --EEEecCcccCeeEEEEecCCCEEEEEcC---------CCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCC
Q 001295          887 --KSKLKGHSKRITGLAFSHALNVLVSSGA---------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD  955 (1106)
Q Consensus       887 --~~~l~~h~~~V~~l~~s~d~~~l~s~s~---------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~d  955 (1106)
                        +..+......-. ++ .-++++++.|+.         -..+.+||+.+.+   ...+.....  .  ..-..++. -+
T Consensus       131 ~~~~~~p~~r~~~~-~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~---W~~~~~~p~--~--r~~~~~~~-~~  200 (306)
T 3ii7_A          131 HTKPSMLTQRCSHG-MV-EANGLIYVCGGSLGNNVSGRVLNSCEVYDPATET---WTELCPMIE--A--RKNHGLVF-VK  200 (306)
T ss_dssp             EEECCCSSCCBSCE-EE-EETTEEEEECCEESCTTTCEECCCEEEEETTTTE---EEEECCCSS--C--CBSCEEEE-ET
T ss_pred             EeCCCCcCCcceeE-EE-EECCEEEEECCCCCCCCcccccceEEEeCCCCCe---EEECCCccc--h--hhcceEEE-EC
Confidence              222221111111 22 236677777764         2448889988743   222211111  0  11122222 26


Q ss_pred             CcEEEEE-eC-----CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcC-----CeEEEEEcCCceeE
Q 001295          956 QIHFLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLR 1022 (1106)
Q Consensus       956 g~~l~~~-~d-----~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~D-----g~i~vwd~~~~~~~ 1022 (1106)
                      ++.++.+ .+     ..+.+||..+.+-...-..........++.+  ++++++.|+.+     ..+.+||..+.+-.
T Consensus       201 ~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~  276 (306)
T 3ii7_A          201 DKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWV  276 (306)
T ss_dssp             TEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred             CEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence            6666663 22     4689999988754332111111112223333  67788888754     46899999887644

>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1

Probab=96.19  E-value=0.0016  Score=59.05  Aligned_cols=82  Identities=18%  Similarity=0.279  Sum_probs=63.3

Q ss_pred             ccccchhhhHHHHHHHHHHHhCCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccccccchhhccCCC-------chH
Q 001295           66 NRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD-------TKS  138 (1106)
Q Consensus        66 ~~~~~~~~~~i~~q~~lEll~~~~~~~A~~~l~~~l~~l~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~-------~~~  138 (1106)
                      .++.+ ++|+|+.|.||||+.++ .++|..++.+.-..+...+.+.+++|+.+....++.+++....++.       .+.
T Consensus        30 ~EL~~-lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~hl~~n~~~~~fr~nKy~I~ls~~  107 (148)
T 2j49_A           30 PELSY-IMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKT  107 (148)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHHCHHHHHHHSSCEEEEECHH
T ss_pred             HHHHH-HHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhCHHHHHHHhCCeEEEECHH
Confidence            34555 99999999999999999 9999999997766665667788888888887777777766555555       356


Q ss_pred             HHHHHHHHHHh
Q 001295          139 ARSIMLVELKK  149 (1106)
Q Consensus       139 ~r~~l~~~l~~  149 (1106)
                      +-..|+..|++
T Consensus       108 s~~lL~~fL~~  118 (148)
T 2j49_A          108 TLNLLLYFLNE  118 (148)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66666666664

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.16  E-value=1.9  Score=46.49  Aligned_cols=113  Identities=12%  Similarity=0.162  Sum_probs=59.9

Q ss_pred             CCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccC---CCE
Q 001295          350 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD---GSL  426 (1106)
Q Consensus       350 ~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~~  426 (1106)
                      -...+.|+|.|+|++|++ +...|.|++++.. +....  .+  -++.        .+..........|+|+||   +.+
T Consensus        17 l~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~-g~~~~--~~--~~~~--------~v~~~g~~g~~gia~~pdf~~~g~   82 (353)
T 2g8s_A           17 LDHPWALAFLPDNHGMLI-TLRGGELRHWQAG-KGLSA--PL--SGVP--------DVWAHGQGGLLDVVLAPDFAQSRR   82 (353)
T ss_dssp             ESSEEEEEECSTTCCEEE-EETTTEEEEEETT-TEECC--CC--BSCC--------CCCCSTTCSEEEEEECTTHHHHCE
T ss_pred             CCCcEEEEEcCCCCEEEE-EeCCceEEEEeCC-Cceee--Ee--cCCc--------ccccCCCCCceeEEECCCCCCCCE
Confidence            356799999999995344 4567999999853 32110  00  0000        011223446789999996   444


Q ss_pred             EEEE-eC-------CCeEEEEEccCCc----eeeeee-eec---cccCCeeEEEEcCCCCceEEEEe
Q 001295          427 FGVA-YS-------RHIVQIYSYHGGD----EVRQHL-EID---AHVGGVNDIAFSHPNKQLCVITC  477 (1106)
Q Consensus       427 las~-~~-------d~~v~iwd~~~~~----~~~~~~-~l~---~h~~~V~~~~~s~d~~~~~l~s~  477 (1106)
                      |..+ +.       ...|..|++..+.    ..+.+. .+.   .....-..|+|.|||. +++..|
T Consensus        83 lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G  148 (353)
T 2g8s_A           83 IWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALG  148 (353)
T ss_dssp             EEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEEC
T ss_pred             EEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEEC
Confidence            4443 22       2356667765431    111111 111   1111246799999995 344443

>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1

Probab=96.10  E-value=0.0028  Score=50.16  Aligned_cols=56  Identities=16%  Similarity=0.224  Sum_probs=43.5

Q ss_pred             hHHHHHHHHHHHhHhcHHHHHHHHHHhhCCCccH--HHHHHHHhcCCHHHHHHHhccc
Q 001295            5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFNM--KYFEDEVHNGNWDDVEKYLSGF   60 (1106)
Q Consensus         5 ~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~~~~--~~~~~~i~~g~w~~~~~~l~~~   60 (1106)
                      ++|+.+-|++||..+||.+++.+|.+|.++..+.  ..-..-+|+-.|..++.+=+++
T Consensus        10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQKKI   67 (88)
T 1uuj_A           10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKKV   67 (88)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHHHH
Confidence            6799999999999999999999999999988751  1223446677777766655444

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=95.94  E-value=0.69  Score=48.66  Aligned_cols=187  Identities=11%  Similarity=0.111  Sum_probs=97.3

Q ss_pred             CCCEEEEEe-C-----CeEEEEEcCCCceeee--ecCCCCCeeEEEEecCCCceEEEeeCCC-----cEEEEEeecceE-
Q 001295          821 NDSYVMSAS-G-----GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVDEV-  886 (1106)
Q Consensus       821 ~~~~l~~~s-d-----g~i~vwd~~~~~~~~~--~~~~~~~v~~l~~s~~d~~~la~g~~dg-----~v~iwd~~~~~~-  886 (1106)
                      ++++++.|+ +     ..+.+||..+.+....  +........++.  - ++++++.|+.++     .+.+||+.+.+- 
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~  137 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV--L-NGLLYAVGGFDGSTGLSSVEAYNIKSNEWF  137 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--E-TTEEEEEEEECSSCEEEEEEEEETTTTEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE--E-CCEEEEEcCCCCCccCceEEEEeCCCCeEe
Confidence            677777775 3     3588999887553322  221111222222  2 677888887664     577888776542 


Q ss_pred             -EEEecCcccCeeEEEEecCCCEEEEEcCC-------CcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcE
Q 001295          887 -KSKLKGHSKRITGLAFSHALNVLVSSGAD-------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH  958 (1106)
Q Consensus       887 -~~~l~~h~~~V~~l~~s~d~~~l~s~s~D-------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~  958 (1106)
                       +..+......- +++. -++++++.|+.+       ..+.+||+.+.+   ...+.....  .  ..-.+++ .-+++.
T Consensus       138 ~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~---W~~~~~~p~--~--r~~~~~~-~~~~~i  207 (302)
T 2xn4_A          138 HVAPMNTRRSSV-GVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNE---WTYIAEMST--R--RSGAGVG-VLNNLL  207 (302)
T ss_dssp             EECCCSSCCBSC-EEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTE---EEEECCCSS--C--CBSCEEE-EETTEE
T ss_pred             ecCCCCCcccCc-eEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCc---EEECCCCcc--c--cccccEE-EECCEE
Confidence             22222111111 2222 366777777653       348889987643   122211111  0  1112222 235666


Q ss_pred             EEEE-eC-----CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCC-----eEEEEEcCCceeE
Q 001295          959 FLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-----TVCVFSAANLKLR 1022 (1106)
Q Consensus       959 l~~~-~d-----~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg-----~i~vwd~~~~~~~ 1022 (1106)
                      ++.+ .+     ..+.+||..+.+-...-........-..+.  -++++++.|+.++     .|.+||..+.+-.
T Consensus       208 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  280 (302)
T 2xn4_A          208 YAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTDKWT  280 (302)
T ss_dssp             EEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred             EEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCCeEE
Confidence            6663 32     469999998775443221111111111222  2677777777654     4899999887654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=95.94  E-value=0.73  Score=49.23  Aligned_cols=186  Identities=11%  Similarity=0.018  Sum_probs=94.1

Q ss_pred             CeEEEEEccCCCEEEEEe------------CCCeEEEEEccCCce-eeeeeeecc-----ccCCeeEEEEcC--CCCceE
Q 001295          414 SVNRVIWSPDGSLFGVAY------------SRHIVQIYSYHGGDE-VRQHLEIDA-----HVGGVNDIAFSH--PNKQLC  473 (1106)
Q Consensus       414 ~V~~l~~spdg~~las~~------------~d~~v~iwd~~~~~~-~~~~~~l~~-----h~~~V~~~~~s~--d~~~~~  473 (1106)
                      ....++..|+|..+++++            .+|.|.++|.++... ...+ .+.+     .......+.+.+  ++...+
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~L  129 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVYL  129 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence            455677889886666652            689999999984311 2222 2332     234667777765  454313


Q ss_pred             EEEecC--CCcEEEEeCCCCce----eEEEecc-CCCeEEEeccccCCceEEEEEec-----------------CCeEEE
Q 001295          474 VITCGD--DKTIKVWDATNGAK----QYIFEGH-EAPVYSVCPHHKENIQFIFSTAL-----------------DGKIKA  529 (1106)
Q Consensus       474 l~s~~~--d~~i~iwd~~~~~~----~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~~-----------------dg~i~i  529 (1106)
                      ++.-..  +.+|.+|++..+..    +.++.+. -...+.+.+.  ++|.+.++...                 .|.|..
T Consensus       130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~--~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr  207 (355)
T 3sre_A          130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAV--GPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY  207 (355)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEE--ETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred             EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEe--CCCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence            333222  57888888765322    2233332 2345666654  34455555431                 122333


Q ss_pred             EeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEE-CCCeEEEEECCC-cce--eEEEc
Q 001295          530 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDS-VQL--LTSID  605 (1106)
Q Consensus       530 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~-~~~--~~~~~  605 (1106)
                      +|.  .+ ...+.                     ..-..-+.++|+|+++.++.+. ..+.|+.|++.. ++.  .+.+.
T Consensus       208 ~d~--~~-~~~~~---------------------~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~  263 (355)
T 3sre_A          208 YSP--ND-VRVVA---------------------EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS  263 (355)
T ss_dssp             ECT--TC-CEEEE---------------------EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE
T ss_pred             EEC--Ce-EEEee---------------------cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe
Confidence            322  11 11111                     1111334466666666666554 578899998853 332  12232


Q ss_pred             cCCCCCCcCeEEEcc-CCCEEEEEe
Q 001295          606 ADGGLPASPRIRFNK-DGCLLAVST  629 (1106)
Q Consensus       606 ~~~~~~~v~~v~~s~-~~~~l~~~~  629 (1106)
                      .   ....-.+++.+ +|++.+++.
T Consensus       264 ~---~g~PDGi~vD~e~G~lwva~~  285 (355)
T 3sre_A          264 F---DTLVDNISVDPVTGDLWVGCH  285 (355)
T ss_dssp             C---SSEEEEEEECTTTCCEEEEEE
T ss_pred             C---CCCCceEEEeCCCCcEEEEec
Confidence            1   12234567777 477666544

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.86  E-value=0.39  Score=59.80  Aligned_cols=236  Identities=14%  Similarity=0.133  Sum_probs=141.1

Q ss_pred             eEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeec-ceEEEEecC
Q 001295          814 PCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVKSKLKG  892 (1106)
Q Consensus       814 ~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~-~~~~~~l~~  892 (1106)
                      -+.-++|..+.+|.-...++.|||+++...+..+.-. ..|.-=.|-.  .+.|+..+ +..|+-|++.. ..+.+.+.-
T Consensus        69 dsAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~~-e~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR  144 (1630)
T 1xi4_A           69 DSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDR  144 (1630)
T ss_pred             hhhccCCCcceEEEecCCeEEEeehHHhhhhcccccC-CCceEEEecC--CCeeEEEc-CCeEEEeccCCCCccHHHHhc
Confidence            3456788888888777889999999988777666533 3466556654  44555554 56899999964 234444444


Q ss_pred             c----ccCeeEEEEecCCCEEEEEc-------CCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEE---cCCCcE
Q 001295          893 H----SKRITGLAFSHALNVLVSSG-------ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF---HQDQIH  958 (1106)
Q Consensus       893 h----~~~V~~l~~s~d~~~l~s~s-------~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---s~dg~~  958 (1106)
                      |    ...|..-..+++.+|++..|       -.|.+.+|+++.+.      -+..+||..   .-..+.+   .+....
T Consensus       145 ~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~------sQ~iegha~---~F~~~~~~~~~~~~~l  215 (1630)
T 1xi4_A          145 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAA---SFAQFKMEGNAEESTL  215 (1630)
T ss_pred             chhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc------chhhhHhHh---hhheeccCCCCCCceE
Confidence            4    35677777889999987544       34788999988743      233344432   1111111   112223


Q ss_pred             EEEEe----CCeEEEEecCCc---e------Eeee-cccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEe
Q 001295          959 FLVVH----ETQLAIFETTKL---E------CVKQ-WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCR 1024 (1106)
Q Consensus       959 l~~~~----d~~v~i~d~~~~---~------~~~~-~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~ 1024 (1106)
                      ++.+.    .+++.|.++...   .      .+.. +..+.-.+-..++..|+.-..+...+.-|.|+++|+.||..+.+
T Consensus       216 ~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~  295 (1630)
T 1xi4_A          216 FCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM  295 (1630)
T ss_pred             EEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhh
Confidence            33232    267888887543   1      1111 11112244456788888888888888999999999999998865


Q ss_pred             eCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCC
Q 001295         1025 INPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus      1025 ~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
                      -.    +.    +..|.  ..+.....+ =++.....|.|.--.+.+..
T Consensus       296 ~r----is----~~~iF--~~~~~~~~~-g~~~vnr~G~vl~v~v~~~~  333 (1630)
T 1xi4_A          296 NR----IS----GETIF--VTAPHEATA-GIIGVNRKGQVLSVCVEEEN  333 (1630)
T ss_pred             cc----cc----CCceE--EeccCCCCC-ceEEEcCCceEEEEEEccch
Confidence            44    11    11133  222222122 23334467777666666555

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.77  E-value=1.2  Score=48.23  Aligned_cols=198  Identities=8%  Similarity=-0.047  Sum_probs=94.5

Q ss_pred             CCCEEEEEeC-----------CeEEEEEcCCCceeeeecCC-CCCeeEEEEecCCCceEEEeeCC---------------
Q 001295          821 NDSYVMSASG-----------GKISLFNMMTFKTMATFMPP-PPAATFLAFHPQDNNIIAIGMDD---------------  873 (1106)
Q Consensus       821 ~~~~l~~~sd-----------g~i~vwd~~~~~~~~~~~~~-~~~v~~l~~s~~d~~~la~g~~d---------------  873 (1106)
                      ++++++.|+.           ..+.+||..+.+-...-... .......+... ++++++.|+.+               
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~  143 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVH-NGKAYVTGGVNQNIFNGYFEDLNEAG  143 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEE-TTEEEEEECCCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEEE-CCEEEEEeCcCCCcCcccccchhhcC
Confidence            5666665542           34889998875533221111 11112212224 77888888865               


Q ss_pred             ------------------------CcEEEEEeecce--EEEEecCcccCeeEEEEecCCCEEEEEcCC------CcEEEE
Q 001295          874 ------------------------SSIQIYNVRVDE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD------SQLCVW  921 (1106)
Q Consensus       874 ------------------------g~v~iwd~~~~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D------g~i~vw  921 (1106)
                                              ..+.+||..+.+  .+..+......-.+++. -++++++.|+.+      ..+.+|
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~  222 (357)
T 2uvk_A          144 KDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFEL  222 (357)
T ss_dssp             TCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEE
T ss_pred             CcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEE
Confidence                                    468899987643  33333211111022333 256677777643      346777


Q ss_pred             eCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEe-C----------------------CeEEEEecCCceEe
Q 001295          922 SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH-E----------------------TQLAIFETTKLECV  978 (1106)
Q Consensus       922 d~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~-d----------------------~~v~i~d~~~~~~~  978 (1106)
                      |++.... ....+.......   ......+...+++.++.+. +                      ..+.+||+.+.+-.
T Consensus       223 d~d~~~~-~W~~~~~~~~~~---~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~  298 (357)
T 2uvk_A          223 DFTGNNL-KWNKLAPVSSPD---GVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWD  298 (357)
T ss_dssp             ECC---C-EEEECCCSSTTT---CCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CE
T ss_pred             EecCCCC-cEEecCCCCCCc---ccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCcee
Confidence            7622111 122221111000   0112223444666666632 1                      25778998875432


Q ss_pred             eecccCCCCCCeeEEEECCCCCEEEEEEcCC------eEEEEEcCCceeEEeeC
Q 001295          979 KQWVPRESSAPITHATFSCDSQLVYACFLDA------TVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus       979 ~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg------~i~vwd~~~~~~~~~~~ 1026 (1106)
                      ..-........  ..+..-++++++.|+.++      .|.++++++++.+....
T Consensus       299 ~~~~~p~~r~~--~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~  350 (357)
T 2uvk_A          299 KSGELSQGRAY--GVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL  350 (357)
T ss_dssp             EEEECSSCCBS--SEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred             eCCCCCCCccc--ceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence            22111111111  122334778888888653      46677999888876655

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=95.69  E-value=1.1  Score=47.30  Aligned_cols=193  Identities=13%  Similarity=0.091  Sum_probs=97.9

Q ss_pred             EEecCCCEEEEEe-----CC-------eEEEEEcCCCceeee--ecCCCCCeeEEEEecCCCceEEEeeCC--------C
Q 001295          817 ALSKNDSYVMSAS-----GG-------KISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDD--------S  874 (1106)
Q Consensus       817 ~~s~~~~~l~~~s-----dg-------~i~vwd~~~~~~~~~--~~~~~~~v~~l~~s~~d~~~la~g~~d--------g  874 (1106)
                      +...++++++.|+     ++       .+.+||..+.+....  +....... +++..  ++++++.|+.+        .
T Consensus        41 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~  117 (315)
T 4asc_A           41 LVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLF-GLGEA--LNSIYVVGGREIKDGERCLD  117 (315)
T ss_dssp             EECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESC-EEEEE--TTEEEEECCEESSTTCCBCC
T ss_pred             EEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhce-eEEEE--CCEEEEEeCCcCCCCCcccc
Confidence            3345777777665     11       277888877554221  11111111 22222  66788888743        3


Q ss_pred             cEEEEEeecce--EEEEecCcccCeeEEEEecCCCEEEEEcC-C-----CcEEEEeCCCcccccceeecccCCCCCCCCC
Q 001295          875 SIQIYNVRVDE--VKSKLKGHSKRITGLAFSHALNVLVSSGA-D-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQS  946 (1106)
Q Consensus       875 ~v~iwd~~~~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  946 (1106)
                      .+.+||..+.+  .+..+...  .....+...++++++.|+. +     ..+.+||..+.+   ...+.....    ...
T Consensus       118 ~~~~~d~~~~~W~~~~~~p~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~---W~~~~~~p~----~r~  188 (315)
T 4asc_A          118 SVMCYDRLSFKWGESDPLPYV--VYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFE---WKELAPMQT----ARS  188 (315)
T ss_dssp             CEEEEETTTTEEEECCCCSSC--CBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTE---EEECCCCSS----CCB
T ss_pred             eEEEECCCCCcEeECCCCCCc--ccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCe---EEECCCCCC----chh
Confidence            68899988754  22222211  1111222246677777776 2     458889887743   111211110    011


Q ss_pred             CceEEEcCCCcEEEE-EeCC-----eEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCC-----------
Q 001295          947 DTRVQFHQDQIHFLV-VHET-----QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA----------- 1009 (1106)
Q Consensus       947 i~~~~~s~dg~~l~~-~~d~-----~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg----------- 1009 (1106)
                      -..++ .-+++.++. +.++     .+.+||..+.+-...-........-..+.+  ++++++.|+.++           
T Consensus       189 ~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~  265 (315)
T 4asc_A          189 LFGAT-VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL--VGTLYAIGGFATLETESGELVPT  265 (315)
T ss_dssp             SCEEE-EETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEE
T ss_pred             ceEEE-EECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE--CCEEEEECCccccCcCCcccccc
Confidence            12222 236666666 4332     588999988754433211111111122222  667777777542           


Q ss_pred             ---eEEEEEcCCceeEEe
Q 001295         1010 ---TVCVFSAANLKLRCR 1024 (1106)
Q Consensus      1010 ---~i~vwd~~~~~~~~~ 1024 (1106)
                         .|.+||..+.+-...
T Consensus       266 ~~~~v~~yd~~~~~W~~~  283 (315)
T 4asc_A          266 ELNDIWRYNEEEKKWEGV  283 (315)
T ss_dssp             EEEEEEEEETTTTEEEEE
T ss_pred             ccCcEEEecCCCChhhhh
Confidence               477889888765543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.66  E-value=0.32  Score=60.56  Aligned_cols=246  Identities=9%  Similarity=0.075  Sum_probs=139.9

Q ss_pred             EEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeCCCe
Q 001295          356 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI  435 (1106)
Q Consensus       356 ~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~  435 (1106)
                      ...+|..+ ++|.-. ..++.|+|+++.+.+....+                    ...|..=.|-.+. .|+..+ +..
T Consensus        71 AIMnP~~~-iiALra-g~~lQiFnl~~k~klks~~~--------------------~e~VvfWkWis~~-~l~lVT-~~a  126 (1630)
T 1xi4_A           71 AIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLN-TVALVT-DNA  126 (1630)
T ss_pred             hccCCCcc-eEEEec-CCeEEEeehHHhhhhccccc--------------------CCCceEEEecCCC-eeEEEc-CCe
Confidence            44677776 566644 67899999998877654211                    2356666776444 455554 456


Q ss_pred             EEEEEccCCceeeeeeeeccc----cCCeeEEEEcCCCCceEEEEec------CCCcEEEEeCCCCceeEEEeccCCCeE
Q 001295          436 VQIYSYHGGDEVRQHLEIDAH----VGGVNDIAFSHPNKQLCVITCG------DDKTIKVWDATNGAKQYIFEGHEAPVY  505 (1106)
Q Consensus       436 v~iwd~~~~~~~~~~~~l~~h----~~~V~~~~~s~d~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~h~~~v~  505 (1106)
                      |.-|++.+.....  ..+..|    ...|..-.-+++.++ ++++|=      -.|.+.+|..+.+ ..+.+.||.+...
T Consensus       127 VyHW~~~~~s~P~--k~fdR~~~L~~~QIinY~~d~~~kW-~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~  202 (1630)
T 1xi4_A          127 VYHWSMEGESQPV--KMFDRHSSLAGCQIINYRTDAKQKW-LLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFA  202 (1630)
T ss_pred             EEEeccCCCCccH--HHHhcchhcccCeeEEeeeCCCCCe-EEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhh
Confidence            9999997533222  234444    346777788899986 333332      4578889986544 3456777766554


Q ss_pred             EEeccccCCceEEEE-Eec---CCeEEEEeCCCC-CceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCE
Q 001295          506 SVCPHHKENIQFIFS-TAL---DGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR  580 (1106)
Q Consensus       506 ~~~~~~~~~~~~l~s-~~~---dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~  580 (1106)
                      .+.....+....+++ +..   .+.+++-++... ....   ........+.|.|+..       ...-..+..++.-..
T Consensus       203 ~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~---~f~kk~~~~~~~~~~~-------~Dfpv~~~vs~k~g~  272 (1630)
T 1xi4_A          203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ---PFPKKAVDVFFPPEAQ-------NDFPVAMQISEKHDV  272 (1630)
T ss_pred             eeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCC---CCccccccccCCcccc-------cCcceEEEeccccCE
Confidence            444322222122332 222   268888888543 1111   1112234455555432       113344666777777


Q ss_pred             EEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccC
Q 001295          581 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD  641 (1106)
Q Consensus       581 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~  641 (1106)
                      +...+.-|.|.+||+.++.++..-+....  .|...+.+....-++.....|.|.-..+..
T Consensus       273 iy~itk~G~~~~~d~~t~~~i~~~ris~~--~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~  331 (1630)
T 1xi4_A          273 VFLITKYGYIHLYDLETGTCIYMNRISGE--TIFVTAPHEATAGIIGVNRKGQVLSVCVEE  331 (1630)
T ss_pred             EEEEecCceEEEEecccchhhhhccccCC--ceEEeccCCCCCceEEEcCCceEEEEEEcc
Confidence            88889999999999999988765543322  333333333322333334556555544443

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.59  E-value=0.097  Score=55.45  Aligned_cols=199  Identities=7%  Similarity=0.023  Sum_probs=106.5

Q ss_pred             ceEEEeeCCCcEEEEEeecceEEEEecCc-ccCeeEEEE--ec-CCCEEEEE-cCCCcEEEEeCCCcccccceeecccCC
Q 001295          865 NIIAIGMDDSSIQIYNVRVDEVKSKLKGH-SKRITGLAF--SH-ALNVLVSS-GADSQLCVWSSDGWEKQKNRFLQIPTG  939 (1106)
Q Consensus       865 ~~la~g~~dg~v~iwd~~~~~~~~~l~~h-~~~V~~l~~--s~-d~~~l~s~-s~Dg~i~vwd~~~~~~~~~~~~~~~~~  939 (1106)
                      .++++++.||.|+-+|..+|+.+-++... ..++....-  .+ ++..++.. +.||.|..++..+|.......+.....
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            47888999999999999999998887654 122221110  01 22333333 589999999888764332111111100


Q ss_pred             CCCCCCCCceEEE------------cCCCcEEEEEeCCeEEEEecCCceEeeecccCCCCCC-----eeEEEEC-----C
Q 001295          940 RTPTAQSDTRVQF------------HQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAP-----ITHATFS-----C  997 (1106)
Q Consensus       940 ~~~~~~~i~~~~~------------s~dg~~l~~~~d~~v~i~d~~~~~~~~~~~~~~h~~~-----v~~l~~s-----~  997 (1106)
                             ..-+..            +.+|..++.+.++.+...|+.+|+.+..+....-...     ..|....     .
T Consensus        91 -------~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~  163 (339)
T 2be1_A           91 -------TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQE  163 (339)
T ss_dssp             -------TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC-------------------
T ss_pred             -------ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccccccccccccc
Confidence                   011221            2455555558999999999999999988764321111     1112111     1


Q ss_pred             CCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCCCcc
Q 001295          998 DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKW 1076 (1106)
Q Consensus       998 d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~~~~ 1076 (1106)
                      .+..|+.+..+..+.+.+ .+|+ +..+....+.+... ...+. ..-..+. |+.+ +.++.||.|.-.|..+|+..|
T Consensus       164 ~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~-~~~~~-~~~~~s~-Dg~~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          164 CENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVL-DVPLA-LQNTFSK-DGMC-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             -CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTT-THHHH-TTCSSCS-SSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred             CCCeEEEecceEEEEEEC-CCCC-eEEEeccccccccc-ccccc-ccccccc-CCcE-EEECCCCEEEEEECCCCcEEE
Confidence            245677777787777766 4554 32222111111110 00000 0000011 3455 446778888888888888777

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.54  E-value=1.2  Score=48.10  Aligned_cols=91  Identities=21%  Similarity=0.246  Sum_probs=49.1

Q ss_pred             CCCEEEEEe--CCeEEEEEcCC--Cce--eeeec-CCCCCeeEEEEecCCCceEEEeeC-C---------CcEEEEEeec
Q 001295          821 NDSYVMSAS--GGKISLFNMMT--FKT--MATFM-PPPPAATFLAFHPQDNNIIAIGMD-D---------SSIQIYNVRV  883 (1106)
Q Consensus       821 ~~~~l~~~s--dg~i~vwd~~~--~~~--~~~~~-~~~~~v~~l~~s~~d~~~la~g~~-d---------g~v~iwd~~~  883 (1106)
                      ++++++.|+  ...+.+||..+  .+.  +..+. ...... +++. - ++++++.|+. +         ..+.+||..+
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~-~~~~-~-~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~   95 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQA-TSAF-I-DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT   95 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSC-EEEE-E-TTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccc-eEEE-E-CCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence            677777776  46799999864  222  22222 111112 2222 2 6778888876 2         3688999877


Q ss_pred             ceE--EEEecCcccCeeEEEEecCCCEEEEEcCC
Q 001295          884 DEV--KSKLKGHSKRITGLAFSHALNVLVSSGAD  915 (1106)
Q Consensus       884 ~~~--~~~l~~h~~~V~~l~~s~d~~~l~s~s~D  915 (1106)
                      .+-  +..+. ........+...++++++.|+.+
T Consensus        96 ~~W~~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~  128 (357)
T 2uvk_A           96 NSWVKLMSHA-PMGMAGHVTFVHNGKAYVTGGVN  128 (357)
T ss_dssp             TEEEECSCCC-SSCCSSEEEEEETTEEEEEECCC
T ss_pred             CcEEECCCCC-CcccccceEEEECCEEEEEeCcC
Confidence            542  22222 01111222223577888888865

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.53  E-value=2.4  Score=44.76  Aligned_cols=222  Identities=14%  Similarity=0.104  Sum_probs=110.2

Q ss_pred             CeEEEEEcCCCceeee-ecCCCCCeeEEEEecCCCceEEEeeC----CC-------cEEEEEeecceEE--EEecCcccC
Q 001295          831 GKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMD----DS-------SIQIYNVRVDEVK--SKLKGHSKR  896 (1106)
Q Consensus       831 g~i~vwd~~~~~~~~~-~~~~~~~v~~l~~s~~d~~~la~g~~----dg-------~v~iwd~~~~~~~--~~l~~h~~~  896 (1106)
                      ..+..||..+.+.... +..........+... ++++++.|+.    ++       .+.+||..+.+-.  ..+......
T Consensus        24 ~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~  102 (318)
T 2woz_A           24 TAAVAYDPMENECYLTALAEQIPRNHSSIVTQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL  102 (318)
T ss_dssp             SEEEEEETTTTEEEEEEECTTSCSSEEEEECS-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS
T ss_pred             cceEEECCCCCceecccCCccCCccceEEEEE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc
Confidence            4588999887665432 221122223333344 7788888873    12       1778887765432  222211111


Q ss_pred             eeEEEEecCCCEEEEEcCC-------CcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-e-----
Q 001295          897 ITGLAFSHALNVLVSSGAD-------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H-----  963 (1106)
Q Consensus       897 V~~l~~s~d~~~l~s~s~D-------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~-----  963 (1106)
                      - +++. -++++++.|+.+       ..+.+||..+.+   ...+......    ..-.+++. .+++.++.+ .     
T Consensus       103 ~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~---W~~~~~~p~~----r~~~~~~~-~~~~iyv~GG~~~~~~  172 (318)
T 2woz_A          103 F-GLGE-VDDKIYVVAGKDLQTEASLDSVLCYDPVAAK---WSEVKNLPIK----VYGHNVIS-HNGMIYCLGGKTDDKK  172 (318)
T ss_dssp             C-EEEE-ETTEEEEEEEEBTTTCCEEEEEEEEETTTTE---EEEECCCSSC----EESCEEEE-ETTEEEEECCEESSSC
T ss_pred             c-ceEE-ECCEEEEEcCccCCCCcccceEEEEeCCCCC---EeECCCCCCc----ccccEEEE-ECCEEEEEcCCCCCCC
Confidence            1 2222 267777777754       247778877643   1222111100    01122233 566666663 2     


Q ss_pred             -CCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcC-----CeEEEEEcCCceeEEeeCCCcccCCCCCC
Q 001295          964 -ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRINPSAYLPAGVSS 1037 (1106)
Q Consensus       964 -d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 1037 (1106)
                       -..+.+||..+.+-...-........-.++.  -++++++.|+.+     ..+.+||..+.+-...-.    +|.....
T Consensus       173 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~r~~  246 (318)
T 2woz_A          173 CTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTE----FPQERSS  246 (318)
T ss_dssp             BCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCC----CSSCCBS
T ss_pred             ccceEEEEcCCCCEEEECCCCCCCcccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCC----CCCcccc
Confidence             1358999998875433311111111112222  266777777643     357889988876443211    2222111


Q ss_pred             CCccceEEEEeCCCCCEEEEEeCC--------------CcEEEEeecCCCCccCC
Q 001295         1038 SNVHPLVIAAHPQEPNEFALGLSD--------------GGVHVFEPLESEGKWGV 1078 (1106)
Q Consensus      1038 ~~v~~~~~~~~~~d~~~l~t~~~D--------------g~v~vW~~~~~~~~~~~ 1078 (1106)
                         .  .+...  ++++++.|+.+              ..+.++|+.+.+  |..
T Consensus       247 ---~--~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~--W~~  292 (318)
T 2woz_A          247 ---I--SLVSL--AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE--WAG  292 (318)
T ss_dssp             ---C--EEEEE--TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE--EEE
T ss_pred             ---e--EEEEE--CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE--ehh
Confidence               1  23333  46788888765              346677776654  554

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.42  E-value=0.11  Score=50.25  Aligned_cols=148  Identities=12%  Similarity=-0.000  Sum_probs=83.8

Q ss_pred             CeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeecCCCCC--------eeEEEEecCCCceEEEeeCCCcEEEEEeec
Q 001295          812 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPA--------ATFLAFHPQDNNIIAIGMDDSSIQIYNVRV  883 (1106)
Q Consensus       812 ~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~--------v~~l~~s~~d~~~la~g~~dg~v~iwd~~~  883 (1106)
                      .++.++|+|+|.+.++ .+|.+.-.+..+.....-+. ....        -.++.|.| ++.+.++  .||.|+-++-.+
T Consensus        42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~-s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMG-RAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHH-HCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCCC
T ss_pred             cceeEEECCCccEEEE-eCCeEEEECCCCCCcccccc-cccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCCc
Confidence            5679999999998887 88887777665422211111 1112        37899999 8888887  569888777533


Q ss_pred             ceEE------EEe-cCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCC
Q 001295          884 DEVK------SKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ  956 (1106)
Q Consensus       884 ~~~~------~~l-~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg  956 (1106)
                      ...-      .++ .+-=..+..|.|.|+|.+.+..  |+.+.-+.-.+............-+... -..-+.+.|+++|
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g-~~~yr~l~f~~~G  193 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGG-WDTFKFLFFSSVG  193 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSS-GGGEEEEEECTTS
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCC-cceEEEEEECCCC
Confidence            1100      111 1112457899999999888877  7765433333211111000000000000 0122456799999


Q ss_pred             cEEEEEeCCeEE
Q 001295          957 IHFLVVHETQLA  968 (1106)
Q Consensus       957 ~~l~~~~d~~v~  968 (1106)
                      ...++. ++.+.
T Consensus       194 ~l~~v~-~g~~Y  204 (236)
T 1tl2_A          194 TLFGVQ-GGKFY  204 (236)
T ss_dssp             CEEEEE-TTEEE
T ss_pred             cEEEEe-CCeEE
Confidence            888877 66443

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.41  E-value=2.4  Score=47.10  Aligned_cols=195  Identities=12%  Similarity=0.140  Sum_probs=113.3

Q ss_pred             cCCCEEEEEe--CCeEEEEEcCCCceeeeecC-CCCCeeEEEEe--cCCCceEEEeeC-------CCcE---------EE
Q 001295          820 KNDSYVMSAS--GGKISLFNMMTFKTMATFMP-PPPAATFLAFH--PQDNNIIAIGMD-------DSSI---------QI  878 (1106)
Q Consensus       820 ~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~-~~~~v~~l~~s--~~d~~~la~g~~-------dg~v---------~i  878 (1106)
                      .||+||..-.  +..|...++...++-..+.- ....+..++|-  | +..|++.+++       ||..         .+
T Consensus       140 yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~  218 (638)
T 3sbq_A          140 YDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTM  218 (638)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEE
T ss_pred             eeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceE
Confidence            4889999988  57788899988887665542 34567777776  5 5556666653       2221         11


Q ss_pred             E---EeecceEEEEecCcccCeeEEEEecCCCEEEEEcCC---------------CcEEEEeCCC-------cccccce-
Q 001295          879 Y---NVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD---------------SQLCVWSSDG-------WEKQKNR-  932 (1106)
Q Consensus       879 w---d~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D---------------g~i~vwd~~~-------~~~~~~~-  932 (1106)
                      |   |..+.+...++.- .+..-.+...++|++.++.+.+               ..+.++++..       ++..... 
T Consensus       219 f~~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g  297 (638)
T 3sbq_A          219 YNAIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGD  297 (638)
T ss_dssp             EEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred             EEEEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECC
Confidence            1   1112222111110 1122234556778887776543               1255555432       1110000 


Q ss_pred             -eecccCCCC------------CCCCCCceEEEcCCCcEEEEE--eCCeEEEEecCCceE-------------eeecccC
Q 001295          933 -FLQIPTGRT------------PTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLEC-------------VKQWVPR  984 (1106)
Q Consensus       933 -~~~~~~~~~------------~~~~~i~~~~~s~dg~~l~~~--~d~~v~i~d~~~~~~-------------~~~~~~~  984 (1106)
                       -..+..+..            +.......+.++|||++++++  .+.++.++|.++...             +....  
T Consensus       298 ~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e--  375 (638)
T 3sbq_A          298 SKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE--  375 (638)
T ss_dssp             CCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB--
T ss_pred             CCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc--
Confidence             011111111            122456889999999999995  567899999885321             12222  


Q ss_pred             CCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCc
Q 001295          985 ESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1019 (1106)
Q Consensus       985 ~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~ 1019 (1106)
                       -.......+|.++|....+-..|..|.-|++...
T Consensus       376 -~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a  409 (638)
T 3sbq_A          376 -LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA  409 (638)
T ss_dssp             -CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred             -CCCcccEEEECCCCceEeeeeecceEEEEeccHH
Confidence             1456789999999955556668999999999764

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.26  E-value=2.9  Score=43.59  Aligned_cols=172  Identities=14%  Similarity=0.091  Sum_probs=97.8

Q ss_pred             ecCCCEEEEEe---CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCC--------------CcEEEEEe
Q 001295          819 SKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD--------------SSIQIYNV  881 (1106)
Q Consensus       819 s~~~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~d--------------g~v~iwd~  881 (1106)
                      +.++.+|....   ++.|...+..... ...+..    -.+--+++ ++.+|+.....              ..|+..++
T Consensus        22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~----~~~~~i~~-~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~   95 (302)
T 3s25_A           22 CESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSN----DTAMYINA-DKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKR   95 (302)
T ss_dssp             EEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEE----EEEEEEEE-CSSEEEEEEECC------CCSSCCSEEEEEEET
T ss_pred             EEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccC----CceeeEEE-cCCEEEEEECCCCcccccceeccCCCeEEEEeC
Confidence            45777777665   4667777765433 333331    12345677 66666665443              35666666


Q ss_pred             ecceEEEEecCcccCeeEEEEecCCCEEEEEc--CCCc--EEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCc
Q 001295          882 RVDEVKSKLKGHSKRITGLAFSHALNVLVSSG--ADSQ--LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI  957 (1106)
Q Consensus       882 ~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s--~Dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~  957 (1106)
                      ..++. ..+...    .+..|++++++|+-..  .++.  |..-+++...  ..++..   .      .+  .+|+++|+
T Consensus        96 dg~~~-~~l~~~----~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~--~~~lt~---~------~~--~~~~~~g~  157 (302)
T 3s25_A           96 NGHGS-TVLDPD----PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE--KKKIKN---H------YL--FTCNTSDR  157 (302)
T ss_dssp             TSCCC-EEEECS----CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCC--CEEEES---S------CC--CCSEEETT
T ss_pred             CCCcc-eEeecC----CccEEEEeCCEEEEEeecCCCCceEEEEECCCCC--eEEEeC---C------Cc--eEeeEECC
Confidence            65542 223211    1236788999998776  3444  4444555422  122221   1      11  35688999


Q ss_pred             EEEEEe--CCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcC--CeEEEEEcCCce
Q 001295          958 HFLVVH--ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD--ATVCVFSAANLK 1020 (1106)
Q Consensus       958 ~l~~~~--d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~D--g~i~vwd~~~~~ 1020 (1106)
                      .|.-..  ..+|.+.++..+.....+.     .... ..+.|++++|+-...+  ..|..-+++.+.
T Consensus       158 ~iy~t~~g~~~Iy~~~l~g~~~~~l~~-----~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~  218 (302)
T 3s25_A          158 YFYYNNPKNGQLYRYDTASQSEALFYD-----CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN  218 (302)
T ss_dssp             EEEEECTTTCCEEEEETTTTEEEEEEC-----SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred             EEEEEeCCCceEEEEECCCCCEEEEeC-----CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC
Confidence            888754  4678888888776544432     1222 3456999998876644  356666666554

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.24  E-value=0.12  Score=49.99  Aligned_cols=147  Identities=12%  Similarity=0.054  Sum_probs=83.1

Q ss_pred             CeeEEEEecCCCceEEEeeCCCcEEEEEeecceE------EEEe--cCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCC
Q 001295          853 AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV------KSKL--KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD  924 (1106)
Q Consensus       853 ~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~------~~~l--~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~  924 (1106)
                      .++.++|+| ++.+.++  .+|.++-.+..+...      -..+  .+... -.++.|.|+|.+.++  .||.|.-++-.
T Consensus        42 ~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP  115 (236)
T 1tl2_A           42 NFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPP  115 (236)
T ss_dssp             TCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred             cceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence            677999999 8888877  677776666544111      0111  01122 478899999998888  56888777654


Q ss_pred             Ccccccceee--cccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCceEee-----ecccCCCCCCeeEEEECC
Q 001295          925 GWEKQKNRFL--QIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVK-----QWVPRESSAPITHATFSC  997 (1106)
Q Consensus       925 ~~~~~~~~~~--~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~~~-----~~~~~~h~~~v~~l~~s~  997 (1106)
                      +.......-.  .+-.+.-   ..+..+.|.|+|.+.++. ++.+.-....+.....     ..........-..+.|++
T Consensus       116 ~~~~~~Wl~~a~~vg~~gw---~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~  191 (236)
T 1tl2_A          116 QSDTDNWIARATEVGSGGW---SGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSS  191 (236)
T ss_dssp             CSTTCCHHHHSEEEECSSG---GGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECT
T ss_pred             cCCCCceeccccEeccCCC---CceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECC
Confidence            3222221100  0000000   246889999999999998 8886443333211100     000011222344566888


Q ss_pred             CCCEEEEEEcCCeE
Q 001295          998 DSQLVYACFLDATV 1011 (1106)
Q Consensus       998 d~~~l~t~s~Dg~i 1011 (1106)
                      ++.+.++.  +|.+
T Consensus       192 ~G~l~~v~--~g~~  203 (236)
T 1tl2_A          192 VGTLFGVQ--GGKF  203 (236)
T ss_dssp             TSCEEEEE--TTEE
T ss_pred             CCcEEEEe--CCeE
Confidence            88766654  6633

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=95.05  E-value=1.4  Score=46.39  Aligned_cols=187  Identities=11%  Similarity=0.076  Sum_probs=96.4

Q ss_pred             CCCEEEEEeC----------CeEEEEEcCCCceeee--ecCCCCCeeEEEEecCCCceEEEeeCC-----CcEEEEEeec
Q 001295          821 NDSYVMSASG----------GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDD-----SSIQIYNVRV  883 (1106)
Q Consensus       821 ~~~~l~~~sd----------g~i~vwd~~~~~~~~~--~~~~~~~v~~l~~s~~d~~~la~g~~d-----g~v~iwd~~~  883 (1106)
                      ++++++.|+.          ..+.+||..+.+....  +........++.+   ++++++.|+.+     ..+.+||..+
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~  146 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI---DGHIYAVGGSHGCIHHNSVERYEPER  146 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE---TTEEEEECCEETTEECCCEEEEETTT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE---CCEEEEEcCCCCCcccccEEEECCCC
Confidence            6666666542          3588999877553322  2211122222222   67788887754     3688899876


Q ss_pred             ceEE--EEecCcccCeeEEEEecCCCEEEEEcCC-----CcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCC
Q 001295          884 DEVK--SKLKGHSKRITGLAFSHALNVLVSSGAD-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ  956 (1106)
Q Consensus       884 ~~~~--~~l~~h~~~V~~l~~s~d~~~l~s~s~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg  956 (1106)
                      .+-.  ..+......-.++.+  ++++++.|+.+     ..+.+||+.+.+=   ..+.....    ...-.+++.. ++
T Consensus       147 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W---~~~~~~p~----~r~~~~~~~~-~~  216 (308)
T 1zgk_A          147 DEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEW---RMITAMNT----IRSGAGVCVL-HN  216 (308)
T ss_dssp             TEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEE---EECCCCSS----CCBSCEEEEE-TT
T ss_pred             CeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeE---eeCCCCCC----ccccceEEEE-CC
Confidence            5422  222211111122222  67777777765     4588888876431   11111110    0111222222 66


Q ss_pred             cEEEEE-eC-----CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcC-----CeEEEEEcCCceeE
Q 001295          957 IHFLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLR 1022 (1106)
Q Consensus       957 ~~l~~~-~d-----~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~D-----g~i~vwd~~~~~~~ 1022 (1106)
                      +.++.+ .+     ..+.+||+.+.+-...-........-..+.  -++++++.|+.+     ..|.+||..+.+-.
T Consensus       217 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  291 (308)
T 1zgk_A          217 CIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDTDTWS  291 (308)
T ss_dssp             EEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred             EEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCCCEEe
Confidence            666663 32     569999998876443321111111112222  267777777754     35788888877544

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=94.99  E-value=5.8  Score=44.22  Aligned_cols=100  Identities=16%  Similarity=0.111  Sum_probs=71.0

Q ss_pred             CCeeEEEEecCCCEEEEEe--CCeEEEEEcCCCce-------------eeeecCCCCCeeEEEEecCCCceEEEeeCCCc
Q 001295          811 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKT-------------MATFMPPPPAATFLAFHPQDNNIIAIGMDDSS  875 (1106)
Q Consensus       811 ~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~-------------~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~  875 (1106)
                      .....+.++|||+++++++  +.++.++|++....             ..... -.-.....+|.+ +|.-..+-.-|.+
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidSq  400 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDSQ  400 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTTE
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecce
Confidence            3455689999999999998  78999999874211             11122 233467899999 7866677779999


Q ss_pred             EEEEEeecc----------eEEEEecCcccCeeEEEE------ecCCCEEEEEc
Q 001295          876 IQIYNVRVD----------EVKSKLKGHSKRITGLAF------SHALNVLVSSG  913 (1106)
Q Consensus       876 v~iwd~~~~----------~~~~~l~~h~~~V~~l~~------s~d~~~l~s~s  913 (1106)
                      |.-|++...          ..+.++.-|-.+ -.+.-      .+||++|++..
T Consensus       401 vvkWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          401 VVKWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             EEEEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEEE
T ss_pred             EEEEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCCccEEEEec
Confidence            999999764          466677666543 22332      47999999974

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=94.69  E-value=1.9  Score=45.62  Aligned_cols=193  Identities=9%  Similarity=0.021  Sum_probs=96.1

Q ss_pred             EEecCCCEEEEEe-C----C-------eEEEEEcCCCceeee--ecCCCCCeeEEEEecCCCceEEEeeCC-------Cc
Q 001295          817 ALSKNDSYVMSAS-G----G-------KISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDD-------SS  875 (1106)
Q Consensus       817 ~~s~~~~~l~~~s-d----g-------~i~vwd~~~~~~~~~--~~~~~~~v~~l~~s~~d~~~la~g~~d-------g~  875 (1106)
                      +...++++++.|+ .    +       .+.+||..+.+....  +....... +++..  ++++++.|+.+       ..
T Consensus        52 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~  128 (318)
T 2woz_A           52 IVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF-GLGEV--DDKIYVVAGKDLQTEASLDS  128 (318)
T ss_dssp             EECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC-EEEEE--TTEEEEEEEEBTTTCCEEEE
T ss_pred             EEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc-ceEEE--CCEEEEEcCccCCCCcccce
Confidence            3445777777775 1    1       167788776544322  22111122 22222  56788888764       25


Q ss_pred             EEEEEeecceE--EEEecCcccCeeEEEEecCCCEEEEEcCC------CcEEEEeCCCcccccceeecccCCCCCCCCCC
Q 001295          876 IQIYNVRVDEV--KSKLKGHSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD  947 (1106)
Q Consensus       876 v~iwd~~~~~~--~~~l~~h~~~V~~l~~s~d~~~l~s~s~D------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i  947 (1106)
                      +.+||..+.+-  +..+......- +++ ..++++++.|+.+      ..+.+||+.+.+   ...+.....  +  ..-
T Consensus       129 ~~~yd~~~~~W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~---W~~~~~~p~--~--r~~  199 (318)
T 2woz_A          129 VLCYDPVAAKWSEVKNLPIKVYGH-NVI-SHNGMIYCLGGKTDDKKCTNRVFIYNPKKGD---WKDLAPMKT--P--RSM  199 (318)
T ss_dssp             EEEEETTTTEEEEECCCSSCEESC-EEE-EETTEEEEECCEESSSCBCCCEEEEETTTTE---EEEECCCSS--C--CBS
T ss_pred             EEEEeCCCCCEeECCCCCCccccc-EEE-EECCEEEEEcCCCCCCCccceEEEEcCCCCE---EEECCCCCC--C--ccc
Confidence            78888876542  22222111111 122 2467777777642      358899988743   222211110  0  111


Q ss_pred             ceEEEcCCCcEEEEE-eC-----CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcC-------------
Q 001295          948 TRVQFHQDQIHFLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD------------- 1008 (1106)
Q Consensus       948 ~~~~~s~dg~~l~~~-~d-----~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~D------------- 1008 (1106)
                      .+++. -+++.++.+ .+     ..+.+||+.+.+-...-........-..+.  -++++++.|+.+             
T Consensus       200 ~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~  276 (318)
T 2woz_A          200 FGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS--LAGSLYAIGGFAMIQLESKEFAPTE  276 (318)
T ss_dssp             CEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE--ETTEEEEECCBCCBC----CCBCCB
T ss_pred             ceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEE--ECCEEEEECCeeccCCCCceeccce
Confidence            22333 356666663 22     357889988765433211111111112222  356777777654             


Q ss_pred             -CeEEEEEcCCceeEEe
Q 001295         1009 -ATVCVFSAANLKLRCR 1024 (1106)
Q Consensus      1009 -g~i~vwd~~~~~~~~~ 1024 (1106)
                       ..+.+||..+.+-...
T Consensus       277 ~~~v~~yd~~~~~W~~~  293 (318)
T 2woz_A          277 VNDIWKYEDDKKEWAGM  293 (318)
T ss_dssp             CCCEEEEETTTTEEEEE
T ss_pred             eeeEEEEeCCCCEehhh
Confidence             3588889888765544

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=94.69  E-value=5.3  Score=42.35  Aligned_cols=114  Identities=15%  Similarity=0.111  Sum_probs=66.6

Q ss_pred             CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccC---CC
Q 001295          349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD---GS  425 (1106)
Q Consensus       349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~  425 (1106)
                      .-...+.|+|.|||+ ++++-...|.|++++..+++......+             ..+..........|+|+||   +.
T Consensus        30 gL~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v~~~-------------~~v~~~g~~GllGia~~Pdf~~~g   95 (347)
T 3das_A           30 GLNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTELGEV-------------PGVSPSGEGGLLGIALSPDYASDH   95 (347)
T ss_dssp             CCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEEC-------------TTCCCBTTBSEEEEEECTTHHHHC
T ss_pred             CCCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeeeccc-------------CceeecCCCCceeeEeccccccCC
Confidence            557889999999999 566655489999998765543211000             0012334567899999995   34


Q ss_pred             EEEEE-e--CCCeEEEEEccCCc----e---eeee-eeec-cccCCeeEEEEcCCCCceEEEEec
Q 001295          426 LFGVA-Y--SRHIVQIYSYHGGD----E---VRQH-LEID-AHVGGVNDIAFSHPNKQLCVITCG  478 (1106)
Q Consensus       426 ~las~-~--~d~~v~iwd~~~~~----~---~~~~-~~l~-~h~~~V~~~~~s~d~~~~~l~s~~  478 (1106)
                      +|... +  .++.|.-|.+..+.    .   .+.+ ..+. +....-..|+|.|||.  +.++.+
T Consensus        96 ~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~--Lyvt~G  158 (347)
T 3das_A           96 MVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM--LYAGTG  158 (347)
T ss_dssp             EEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC--EEEECB
T ss_pred             EEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC--EEEEEC
Confidence            44332 2  44566667665521    1   1111 1121 1122456799999997  555543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=93.99  E-value=3.6  Score=48.99  Aligned_cols=198  Identities=11%  Similarity=0.077  Sum_probs=104.8

Q ss_pred             cCCCEEEEEe-C----CeEEEEEcCCCceeeee-c-------CCCCCeeEEEEecCCCceEEEeeCCC------cEEEEE
Q 001295          820 KNDSYVMSAS-G----GKISLFNMMTFKTMATF-M-------PPPPAATFLAFHPQDNNIIAIGMDDS------SIQIYN  880 (1106)
Q Consensus       820 ~~~~~l~~~s-d----g~i~vwd~~~~~~~~~~-~-------~~~~~v~~l~~s~~d~~~la~g~~dg------~v~iwd  880 (1106)
                      .++.+++.|+ +    ..+.+||..+.+....- .       .....-.++.+.. ++++++.|+.++      .+.+||
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd  474 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD  474 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence            5677777776 2    35889998876543322 1       1112233444432 567888887543      578899


Q ss_pred             eecce--EEEEecCcccCeeEEEEecCCCEEEEEcCCC--cEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCC-
Q 001295          881 VRVDE--VKSKLKGHSKRITGLAFSHALNVLVSSGADS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-  955 (1106)
Q Consensus       881 ~~~~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~d-  955 (1106)
                      ..+.+  .+..+...... .+++...++++++.||.++  .+.+||..+..   +..+............-..+++..+ 
T Consensus       475 ~~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~---W~~~~~~g~~p~~r~~~~a~v~~~~~  550 (695)
T 2zwa_A          475 MKTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEI---FKDVTPKDEFFQNSLVSAGLEFDPVS  550 (695)
T ss_dssp             TTTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTE---EEECCCSSGGGGSCCBSCEEEEETTT
T ss_pred             CCCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCc---eEEccCCCCCCCcccceeEEEEeCCC
Confidence            87743  32222211111 1223324888889888765  68899988743   2222210000000012234666665 


Q ss_pred             CcEEEEE-e--C-----CeEEEEecCCce------EeeecccCCCCCCeeEEEECCCCCEEEEEEcC--------CeEEE
Q 001295          956 QIHFLVV-H--E-----TQLAIFETTKLE------CVKQWVPRESSAPITHATFSCDSQLVYACFLD--------ATVCV 1013 (1106)
Q Consensus       956 g~~l~~~-~--d-----~~v~i~d~~~~~------~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~D--------g~i~v 1013 (1106)
                      ++.++.| .  +     ..+.+||+.+..      -............-.+++...++++++.|+.+        ..|.+
T Consensus       551 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~  630 (695)
T 2zwa_A          551 KQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIIS  630 (695)
T ss_dssp             TEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEE
T ss_pred             CEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEE
Confidence            6666664 3  2     468999998776      11111100001111123333347777777743        45999


Q ss_pred             EEcCCceeE
Q 001295         1014 FSAANLKLR 1022 (1106)
Q Consensus      1014 wd~~~~~~~ 1022 (1106)
                      ||..+.+-.
T Consensus       631 yd~~t~~W~  639 (695)
T 2zwa_A          631 LDPLSETLT  639 (695)
T ss_dssp             EETTTTEEE
T ss_pred             EECCCCeEE
Confidence            999988765

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=93.47  E-value=3.1  Score=43.94  Aligned_cols=115  Identities=9%  Similarity=0.012  Sum_probs=69.2

Q ss_pred             CEEEEEeCCCeEEEEEccCCceeeeeeeeccc-cCCeeEEEE--cCCCCceEEEEe-cCCCcEEEEeCCCCceeEEEec-
Q 001295          425 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAH-VGGVNDIAF--SHPNKQLCVITC-GDDKTIKVWDATNGAKQYIFEG-  499 (1106)
Q Consensus       425 ~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h-~~~V~~~~~--s~d~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~-  499 (1106)
                      .+++.++.||.|.-.|..+|+..-..   ... ..++....-  .+.+.. .++.. +.||.|..+|..+|.....+.. 
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~---~~~~~~p~~~~~~~~~~~~~~-~~vv~p~~dG~l~a~~~~~G~~~~~~~~~   86 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSI---EPENFQPLIEIQEPSRLETYE-TLIIEPFGDGNIYYFNAHQGLQKLPLSIR   86 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEE---CGGGSCCSEECCCSCTTTSSE-EEEECCSTTTEEEEEETTTEEEEEEEEHH
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEe---cCCccCCcEEecCCccccCCc-EEEEEECCCCEEEEEECCCCcEEeeeccc
Confidence            36778889999999999888866532   211 112221110  011222 34443 6899999999988865544431 


Q ss_pred             ---cCCCeEEEeccccC-------CceEEEEEecCCeEEEEeCCCCCceeEeeCC
Q 001295          500 ---HEAPVYSVCPHHKE-------NIQFIFSTALDGKIKAWLYDNLGSRVDYEAP  544 (1106)
Q Consensus       500 ---h~~~v~~~~~~~~~-------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  544 (1106)
                         ...++.. .-.|--       .+..+++|+.+|.+...|+.+++.+..+...
T Consensus        87 ~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~  140 (339)
T 2be1_A           87 QLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG  140 (339)
T ss_dssp             HHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred             cceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence               1122221 000000       3368999999999999999999988877643

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=93.38  E-value=6.9  Score=43.61  Aligned_cols=110  Identities=10%  Similarity=0.090  Sum_probs=62.1

Q ss_pred             cCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCC--CCCCCCceEEEcCC---CcEEEE--Ee----
Q 001295          895 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT--PTAQSDTRVQFHQD---QIHFLV--VH----  963 (1106)
Q Consensus       895 ~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~s~d---g~~l~~--~~----  963 (1106)
                      ...++|+|.|||+++++-...+.|++++..++...  ....+.....  .....+..++|+||   +.+|.+  +.    
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~--~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~  104 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVK--TVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK  104 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE--EEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEe--EEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence            35679999999998887655456888876544321  1222211110  11235668999995   444444  22    


Q ss_pred             --------CCeEEEEecCCc-------eEee-ecccCCCCCCeeEEEECCCCCEEEEEEc
Q 001295          964 --------ETQLAIFETTKL-------ECVK-QWVPRESSAPITHATFSCDSQLVYACFL 1007 (1106)
Q Consensus       964 --------d~~v~i~d~~~~-------~~~~-~~~~~~h~~~v~~l~~s~d~~~l~t~s~ 1007 (1106)
                              ...|.-|+....       +.+. .+.. ........|+|.|||.+.++.+.
T Consensus       105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~-~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS-SKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC-CSSCCEEEEEECTTSCEEEEECC
T ss_pred             CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCC-CCCCCCCeEeECCCCeEEEEECC
Confidence                    235666655321       1111 1221 22335789999999987666543

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=93.20  E-value=9.2  Score=39.78  Aligned_cols=175  Identities=13%  Similarity=0.171  Sum_probs=101.7

Q ss_pred             EEEecCCCEEEEEe--C-------------CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEee--CCCcEEE
Q 001295          816 FALSKNDSYVMSAS--G-------------GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM--DDSSIQI  878 (1106)
Q Consensus       816 l~~s~~~~~l~~~s--d-------------g~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~--~dg~v~i  878 (1106)
                      --++++|.+|....  +             ..|+..++...+... +...    .+..|++ +++.|+...  .++.-.|
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~~----~~~~~s~-~g~~Iy~~~~~~~~~~~I  131 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDPD----PCIYASL-IGNYIYYLHYDTQTATSL  131 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EECS----CEEEEEE-ETTEEEEEEESSSSCEEE
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eecC----CccEEEE-eCCEEEEEeecCCCCceE
Confidence            45678999888776  2             247777777654322 2211    2336778 666777665  3444445


Q ss_pred             EEeec-ceEEEEecCcccCeeEEEEecCCCEEEEEcC-CCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCC
Q 001295          879 YNVRV-DEVKSKLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ  956 (1106)
Q Consensus       879 wd~~~-~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg  956 (1106)
                      |.+.. |.....+..+..    .+|+++++.|.-.+. ..+|.+-++..+...  .+   ..+.       ....+.|++
T Consensus       132 y~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~--~l---~~~~-------~~~~~~P~g  195 (302)
T 3s25_A          132 YRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA--LF---YDCN-------CYKPVVLDD  195 (302)
T ss_dssp             EEEETTSCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEE--EE---ECSC-------EEEEEEEET
T ss_pred             EEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEE--EE---eCCC-------ccceeeecC
Confidence            54432 334455554433    456788998887665 567888887765421  12   1221       234567999


Q ss_pred             cEEEEEe--C-CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEc--CCeEEEEEcCCc
Q 001295          957 IHFLVVH--E-TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFL--DATVCVFSAANL 1019 (1106)
Q Consensus       957 ~~l~~~~--d-~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~--Dg~i~vwd~~~~ 1019 (1106)
                      .+|+...  + ..|..-++...... .+.    ...+  ..|+|++++|+-++.  .+.|..-+++..
T Consensus       196 ~~iy~t~~~~~~~I~~~~ldG~~~~-~Lt----~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~  256 (302)
T 3s25_A          196 TNVYYMDVNRDNAIVHVNINNPNPV-VLT----EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT  256 (302)
T ss_dssp             TEEEEEEGGGTTEEEEECSSSCCCE-ECS----CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred             CEEEEEEcCCCcEEEEEECCCCCeE-EEe----CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence            9988742  2 36777777665533 232    2233  347888998876543  356666666543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=92.86  E-value=11  Score=39.97  Aligned_cols=167  Identities=11%  Similarity=0.131  Sum_probs=92.6

Q ss_pred             CCCcEEEEEecCCCeEEEEEe-------------ccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeE
Q 001295          350 GSSPMSMDFHPVQQTLLLVGT-------------NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN  416 (1106)
Q Consensus       350 ~~~v~~~~~sp~g~~llatg~-------------~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~  416 (1106)
                      ......+++.|+|.  +.+++             .+|.|.++|.++..... ..+++-...          +........
T Consensus        49 ~~G~EDi~~~~~G~--~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-~~l~~~g~~----------~~~~~f~Ph  115 (355)
T 3sre_A           49 DNGSEDLEILPNGL--AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-SELEIIGNT----------LDISSFNPH  115 (355)
T ss_dssp             CSCCCEEEECTTSE--EEEEECCC-----------CCEEEEEETTSSSCCE-EECEEECSS----------CCGGGCCEE
T ss_pred             CCCcceeEEcCCCe--EEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-EEEEccCCC----------CCcCceeee
Confidence            45677888899886  34443             58899999987432111 112211000          011122445


Q ss_pred             EEEEcc--CCC-EEEEE-eC--CCeEEEEEccCCc-eeeeeeeeccc-cCCeeEEEEcCCCCceEEEEec----------
Q 001295          417 RVIWSP--DGS-LFGVA-YS--RHIVQIYSYHGGD-EVRQHLEIDAH-VGGVNDIAFSHPNKQLCVITCG----------  478 (1106)
Q Consensus       417 ~l~~sp--dg~-~las~-~~--d~~v~iwd~~~~~-~~~~~~~l~~h-~~~V~~~~~s~d~~~~~l~s~~----------  478 (1106)
                      .+.+.+  +|+ +|.++ ..  +.+|.+|+++.+. .......+.+. -...+.+++.++|.  +.++..          
T Consensus       116 Gi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~--fyvt~~~~ftd~~~~~  193 (355)
T 3sre_A          116 GISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH--FYATNDHYFIDPYLKS  193 (355)
T ss_dssp             EEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE--EEEEESCSCSSHHHHH
T ss_pred             eeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC--EEecCCcEeCCccccc
Confidence            566554  454 44444 22  5678898887542 23333344432 23578999999998  566654          


Q ss_pred             -------CCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCC
Q 001295          479 -------DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL  535 (1106)
Q Consensus       479 -------~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  535 (1106)
                             ..+.|..+|.  ++ +..+...-...+.++|+++.. .+.++-+..+.|..|+++..
T Consensus       194 ~e~~~~~~~g~vyr~d~--~~-~~~~~~~l~~pNGia~spDg~-~lYvadt~~~~I~~~~~~~~  253 (355)
T 3sre_A          194 WEMHLGLAWSFVTYYSP--ND-VRVVAEGFDFANGINISPDGK-YVYIAELLAHKIHVYEKHAN  253 (355)
T ss_dssp             HHHHTTCCCEEEEEECT--TC-CEEEEEEESSEEEEEECTTSS-EEEEEEGGGTEEEEEEECTT
T ss_pred             chhhccCCccEEEEEEC--Ce-EEEeecCCcccCcceECCCCC-EEEEEeCCCCeEEEEEECCC
Confidence                   1244555553  33 333333345678899866542 34445556889999998743

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=92.83  E-value=13  Score=40.51  Aligned_cols=259  Identities=9%  Similarity=0.033  Sum_probs=119.0

Q ss_pred             CCCeeEEEEec--CCCEEEEEeCC----eEEEEEcCCCceeeeec------C--------CCCCeeEEEEecCC-CceEE
Q 001295          810 EEAVPCFALSK--NDSYVMSASGG----KISLFNMMTFKTMATFM------P--------PPPAATFLAFHPQD-NNIIA  868 (1106)
Q Consensus       810 ~~~v~~l~~s~--~~~~l~~~sdg----~i~vwd~~~~~~~~~~~------~--------~~~~v~~l~~s~~d-~~~la  868 (1106)
                      ...|.+|+++|  ++.+.+.+..|    .|...+ ..++.-..+.      .        ....|.++++.|.+ ...|.
T Consensus        54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~  132 (394)
T 3b7f_A           54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY  132 (394)
T ss_dssp             TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred             CCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence            45689999998  55566655554    343332 2222211111      1        11247789998633 44555


Q ss_pred             EeeCCCcEEEEEeecceEEEEec---C----------------cccCeeEEEEecC-CCEEEEEcCCCcEEEEeCCCccc
Q 001295          869 IGMDDSSIQIYNVRVDEVKSKLK---G----------------HSKRITGLAFSHA-LNVLVSSGADSQLCVWSSDGWEK  928 (1106)
Q Consensus       869 ~g~~dg~v~iwd~~~~~~~~~l~---~----------------h~~~V~~l~~s~d-~~~l~s~s~Dg~i~vwd~~~~~~  928 (1106)
                      ++...+.|...+ ..|+.-..+.   .                ....|.+|.+.|. ...|..+..++.|...+ +.++ 
T Consensus       133 ~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~-  209 (394)
T 3b7f_A          133 AGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGT-  209 (394)
T ss_dssp             EEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTS-
T ss_pred             EEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCC-
Confidence            555556554432 2222222221   1                1235788999873 34444444444344332 2221 


Q ss_pred             ccceeecc-cCC-CCC-----CCCCCceEEEcCC-CcEEEEEeCCeEEEEecCCceEeeecccCCCC---CCeeEEEECC
Q 001295          929 QKNRFLQI-PTG-RTP-----TAQSDTRVQFHQD-QIHFLVVHETQLAIFETTKLECVKQWVPRESS---APITHATFSC  997 (1106)
Q Consensus       929 ~~~~~~~~-~~~-~~~-----~~~~i~~~~~s~d-g~~l~~~~d~~v~i~d~~~~~~~~~~~~~~h~---~~v~~l~~s~  997 (1106)
                       ....+.. ... ..+     ....+..+++.|+ ...|.++..+.|...+-. ++.-..+...-..   ..+.+++++|
T Consensus       210 -tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D~-G~tW~~~~~~l~~~~~~~~~~i~~~p  287 (394)
T 3b7f_A          210 -DWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDRR-EGVWKRIGDAMPREVGDIGFPIVVHQ  287 (394)
T ss_dssp             -SCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEETT-TTEEECGGGGSCTTTCSCEEEEEECS
T ss_pred             -CceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCCC-CCcceECCCCCCCCCccceEEEEECC
Confidence             1111111 000 000     0124678899886 355555555666555422 3222222210111   3467888886


Q ss_pred             -CCCEEEEEEc-----------CCeEEEEEcCC-ceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCCCcE
Q 001295          998 -DSQLVYACFL-----------DATVCVFSAAN-LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGV 1064 (1106)
Q Consensus       998 -d~~~l~t~s~-----------Dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~Dg~v 1064 (1106)
                       +...|.++..           ++...||...+ |+.-..+.  .-+|....-..+....++++|.++..|+.++.++.|
T Consensus       288 ~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~--~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l  365 (394)
T 3b7f_A          288 RDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQD--RGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEI  365 (394)
T ss_dssp             SCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEEC--BTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCE
T ss_pred             CCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECC--CCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeE
Confidence             3344444432           33345555443 34333332  112321100001112577887666667777666654


Q ss_pred             EEEeecCCCCccCC
Q 001295         1065 HVFEPLESEGKWGV 1078 (1106)
Q Consensus      1065 ~vW~~~~~~~~~~~ 1078 (1106)
                        |.-.++..+|..
T Consensus       366 --~~S~D~G~tW~~  377 (394)
T 3b7f_A          366 --WASADEGEHWQC  377 (394)
T ss_dssp             --EEESSTTSBCEE
T ss_pred             --EEECCCCCCceE
Confidence              555555556654

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=92.03  E-value=7.9  Score=39.83  Aligned_cols=222  Identities=13%  Similarity=0.059  Sum_probs=114.2

Q ss_pred             CeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEec
Q 001295          812 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK  891 (1106)
Q Consensus       812 ~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~  891 (1106)
                      .|..++....- .++.. ||.|..|-......+..-......|..++...  ...++. . ||.|+.|-....-.+..-.
T Consensus        25 ~i~~ia~G~~h-~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~--~hs~~l-~-~G~v~~wG~n~~Gqlg~P~   98 (282)
T 3qhy_B           25 GVDAIAGGYFH-GLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN--YHSLAL-K-DGEVIAWGGNEDGQTTVPA   98 (282)
T ss_dssp             SCCEEEECSSE-EEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECS--SEEEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred             CCcEEEeCCCe-EEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCC--CEEEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence            56677765433 33333 88999997654322221111223577777753  445555 4 9999999865421111111


Q ss_pred             CcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEe
Q 001295          892 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFE  971 (1106)
Q Consensus       892 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d  971 (1106)
                      .-...|..++...+.  .+... ||.|..|-.....+... ....       ...|..++...+...+ .. ++.|..|-
T Consensus        99 ~~~~~v~~ia~G~~h--s~al~-~G~v~~wG~n~~gqlg~-~~~~-------~~~i~~i~~G~~~~~~-l~-~G~v~~wG  165 (282)
T 3qhy_B           99 EARSGVDAIAAGAWA--SYALK-DGKVIAWGDDSDGQTTV-PAEA-------QSGVTALDGGVYTALA-VK-NGGVIAWG  165 (282)
T ss_dssp             GGSSSEEEEEEETTE--EEEEE-TTEEEEEECCTTSTTSC-CGGG-------GSSEEEEEECSSEEEE-EE-TTEEEEEE
T ss_pred             ccCCCeEEEECcCCE--EEEEe-CCeEEEecCCCCCcCCC-CccC-------CCCeEEEEcccCEEEE-EE-CCEEEEec
Confidence            113467777776443  33334 89999997654322110 0000       1234455444333322 23 89999997


Q ss_pred             cCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCC
Q 001295          972 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1051 (1106)
Q Consensus       972 ~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d 1051 (1106)
                      ......+..-.  .-...|..|+...+.. ++.  .||.|+.|=....-.+.       .|.. ....+.  .++-..  
T Consensus       166 ~n~~gqlg~p~--~~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gqlg-------~p~~-~~~~v~--~i~~G~--  228 (282)
T 3qhy_B          166 DNYFGQTTVPA--EAQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTT-------VPTE-ALSGVS--AIASGE--  228 (282)
T ss_dssp             CCTTSTTSCCG--GGGSSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTC-------CCGG-GGSSCC--EEEECS--
T ss_pred             CCCCCCCCCce--ecCCCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCCC-------CCcc-cCCCce--EEEcCC--
Confidence            65432221111  1135688887654433 333  59999999765432221       1100 011133  454432  


Q ss_pred             CCEEEEEeCCCcEEEEeecC
Q 001295         1052 PNEFALGLSDGGVHVFEPLE 1071 (1106)
Q Consensus      1052 ~~~l~t~~~Dg~v~vW~~~~ 1071 (1106)
                      ...++..  ||.|+.|=-..
T Consensus       229 ~h~~al~--~g~v~~wG~n~  246 (282)
T 3qhy_B          229 WYSLALK--NGKVIAWGSSR  246 (282)
T ss_dssp             SCEEEEE--TTEEEEESTTC
T ss_pred             CEEEEEE--CCEEEEecCCC
Confidence            3344444  99999997554

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=90.43  E-value=17  Score=37.20  Aligned_cols=184  Identities=9%  Similarity=0.022  Sum_probs=98.1

Q ss_pred             CeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEec
Q 001295          812 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK  891 (1106)
Q Consensus       812 ~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~  891 (1106)
                      .|..++...+-..++  .||.|..|-......+..-..-...|..++...  ...++ -. ||.|+.|-....-.+..-.
T Consensus        64 ~i~~ia~G~~hs~~l--~~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~--~hs~a-l~-~G~v~~wG~n~~gqlg~~~  137 (282)
T 3qhy_B           64 GVDAIAAGNYHSLAL--KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA--WASYA-LK-DGKVIAWGDDSDGQTTVPA  137 (282)
T ss_dssp             CCCEEEECSSEEEEE--ETTEEEEEECCTTSTTCCCGGGSSSEEEEEEET--TEEEE-EE-TTEEEEEECCTTSTTSCCG
T ss_pred             CEEEEEeCCCEEEEE--ECCEEEEeeCCCCCCCCCCcccCCCeEEEECcC--CEEEE-Ee-CCeEEEecCCCCCcCCCCc
Confidence            566676654433333  388888887654322211111124677777754  33344 44 9999999765422111111


Q ss_pred             CcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEe
Q 001295          892 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFE  971 (1106)
Q Consensus       892 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d  971 (1106)
                      .....|..++...+.. ++ -. ||.|..|-.....+.. .....       ...|..++...+... +. .++.|..|-
T Consensus       138 ~~~~~i~~i~~G~~~~-~~-l~-~G~v~~wG~n~~gqlg-~p~~~-------~~~v~~i~~G~~hs~-al-~~G~v~~wG  204 (282)
T 3qhy_B          138 EAQSGVTALDGGVYTA-LA-VK-NGGVIAWGDNYFGQTT-VPAEA-------QSGVDDVAGGIFHSL-AL-KDGKVIAWG  204 (282)
T ss_dssp             GGGSSEEEEEECSSEE-EE-EE-TTEEEEEECCTTSTTS-CCGGG-------GSSEEEEEECSSEEE-EE-ETTEEEEEE
T ss_pred             cCCCCeEEEEcccCEE-EE-EE-CCEEEEecCCCCCCCC-Cceec-------CCCeEEEEecCCEEE-EE-ECCeEEEEE
Confidence            2334577776654332 23 33 7889999765433221 01111       124555555544443 33 799999997


Q ss_pred             cCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCc
Q 001295          972 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1019 (1106)
Q Consensus       972 ~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~ 1019 (1106)
                      ......+..-.  .....|..|+...+..++++   ||.|+.|=....
T Consensus       205 ~n~~gqlg~p~--~~~~~v~~i~~G~~h~~al~---~g~v~~wG~n~~  247 (282)
T 3qhy_B          205 DNRYKQTTVPT--EALSGVSAIASGEWYSLALK---NGKVIAWGSSRT  247 (282)
T ss_dssp             CCTTSTTCCCG--GGGSSCCEEEECSSCEEEEE---TTEEEEESTTCC
T ss_pred             CCCCCCCCCCc--ccCCCceEEEcCCCEEEEEE---CCEEEEecCCCC
Confidence            65432221111  11346778876655444333   999999976553

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=89.00  E-value=32  Score=38.18  Aligned_cols=115  Identities=14%  Similarity=0.159  Sum_probs=61.1

Q ss_pred             CCcEEEEEecCCC-eEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccC----CCCcCeEEEEEccC--
Q 001295          351 SSPMSMDFHPVQQ-TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVK----DPGVSVNRVIWSPD--  423 (1106)
Q Consensus       351 ~~v~~~~~sp~g~-~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~----~h~~~V~~l~~spd--  423 (1106)
                      ...+.|+|.|||+ +|+++ ...|.|++++.... ... ..  +.++.       .....    ........|+|+|+  
T Consensus        14 ~~P~~~a~~pdG~~rl~V~-er~G~i~~~~~~g~-~~~-~~--~~~~~-------~~~~~g~~~~~e~Gllgia~~P~f~   81 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFIL-EKEGYVKILTPEGE-IFK-EP--YLDIH-------KLVQSGIKGGDERGLLSLAFHPNYK   81 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEE-ETTTEEEEECTTSC-BCS-SC--SEECT-------TTBCCCCSSSCCCSEEEEEECTTHH
T ss_pred             CCceEEEECCCCCeEEEEE-eCCceEEEEeCCCC-eee-ee--ecCCc-------ceeccCccccCCCcceeeEeCCCCc
Confidence            5679999999995 44554 67899999975422 110 00  01111       00111    23567889999996  


Q ss_pred             --CCEEEEEeC--C----------CeEEEEEccCC--c-----eeeeeeeec--cccCCeeEEEEcCCCCceEEEEecC
Q 001295          424 --GSLFGVAYS--R----------HIVQIYSYHGG--D-----EVRQHLEID--AHVGGVNDIAFSHPNKQLCVITCGD  479 (1106)
Q Consensus       424 --g~~las~~~--d----------~~v~iwd~~~~--~-----~~~~~~~l~--~h~~~V~~~~~s~d~~~~~l~s~~~  479 (1106)
                        +.+.++-+.  +          ..|.-|.+..+  .     ..+.+..+.  .....-..|+|.|||.  +.++.++
T Consensus        82 ~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~--LYv~~Gd  158 (463)
T 2wg3_C           82 KNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGF--LYIILGD  158 (463)
T ss_dssp             HHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSC--EEEEECC
T ss_pred             CCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCc--EEEEeCC
Confidence              444444332  1          14555666432  1     111121221  2223468999999997  4444443

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=87.48  E-value=23  Score=42.04  Aligned_cols=198  Identities=10%  Similarity=0.056  Sum_probs=102.2

Q ss_pred             CCceEEEeeCC----CcEEEEEeecceEEEEe-c-----CcccCe-eEEEEec-CCCEEEEEcCCC------cEEEEeCC
Q 001295          863 DNNIIAIGMDD----SSIQIYNVRVDEVKSKL-K-----GHSKRI-TGLAFSH-ALNVLVSSGADS------QLCVWSSD  924 (1106)
Q Consensus       863 d~~~la~g~~d----g~v~iwd~~~~~~~~~l-~-----~h~~~V-~~l~~s~-d~~~l~s~s~Dg------~i~vwd~~  924 (1106)
                      ++.+++.|+.+    ..+.+||..+++-...- .     ...... .+++..+ ++++++.||.++      .+.+||..
T Consensus       397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~  476 (695)
T 2zwa_A          397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMK  476 (695)
T ss_dssp             SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETT
T ss_pred             CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCC
Confidence            66777778754    36888998775432211 1     111111 2233333 777888887543      47788887


Q ss_pred             CcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE-eCC--eEEEEecCCceEeeecc---cCCCCCCeeEEEECCC
Q 001295          925 GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HET--QLAIFETTKLECVKQWV---PRESSAPITHATFSCD  998 (1106)
Q Consensus       925 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d~--~v~i~d~~~~~~~~~~~---~~~h~~~v~~l~~s~d  998 (1106)
                      +.+   +..+....    ....-.+++.-.+++.++.| .++  .+.+||..+..-...-.   .......-.++.+..+
T Consensus       477 t~~---W~~~~~~p----~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~  549 (695)
T 2zwa_A          477 TRE---WSMIKSLS----HTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV  549 (695)
T ss_dssp             TTE---EEECCCCS----BCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETT
T ss_pred             CCc---EEECCCCC----CCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCC
Confidence            732   11111111    01122334443477777773 322  79999998876433221   0001112233555554


Q ss_pred             -CCEEEEEEc--C-----CeEEEEEcCCcee-----EEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeCC----
Q 001295          999 -SQLVYACFL--D-----ATVCVFSAANLKL-----RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD---- 1061 (1106)
Q Consensus       999 -~~~l~t~s~--D-----g~i~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~D---- 1061 (1106)
                       +++++.|+.  +     ..+.+||+.+..-     -..+......+..  .   .  .+.... ++++++.|+.+    
T Consensus       550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~--~---~--~~~~~~-~~~iyv~GG~~~~~~  621 (695)
T 2zwa_A          550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRY--G---S--QIKYIT-PRKLLIVGGTSPSGL  621 (695)
T ss_dssp             TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCB--S---C--EEEEEE-TTEEEEECCBCSSCC
T ss_pred             CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcc--c---c--eEEEeC-CCEEEEECCccCCCC
Confidence             667777765  2     3589999988772     1122110001111  0   1  233332 36788888753    


Q ss_pred             ----CcEEEEeecCCCCccC
Q 001295         1062 ----GGVHVFEPLESEGKWG 1077 (1106)
Q Consensus      1062 ----g~v~vW~~~~~~~~~~ 1077 (1106)
                          ..+.++|+.+.+  |.
T Consensus       622 ~~~~~~v~~yd~~t~~--W~  639 (695)
T 2zwa_A          622 FDRTNSIISLDPLSET--LT  639 (695)
T ss_dssp             CCTTTSEEEEETTTTE--EE
T ss_pred             CCCCCeEEEEECCCCe--EE
Confidence                458888887755  55

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=86.22  E-value=39  Score=36.12  Aligned_cols=156  Identities=8%  Similarity=0.081  Sum_probs=85.0

Q ss_pred             CeEEEEEcCCC--ceeeeecCC------CCCeeEEEEe---cC---CCceEEEee-CCCcEEEEEeecceEEEEecCccc
Q 001295          831 GKISLFNMMTF--KTMATFMPP------PPAATFLAFH---PQ---DNNIIAIGM-DDSSIQIYNVRVDEVKSKLKGHSK  895 (1106)
Q Consensus       831 g~i~vwd~~~~--~~~~~~~~~------~~~v~~l~~s---~~---d~~~la~g~-~dg~v~iwd~~~~~~~~~l~~h~~  895 (1106)
                      -+|.+||+.+.  +.++++.-.      ...+..+++.   |.   ++.++..+. ..+.|.|||+.+++..+.+..+  
T Consensus       123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~--  200 (381)
T 3q6k_A          123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT--  200 (381)
T ss_dssp             CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG--
T ss_pred             ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC--
Confidence            35677788777  776665321      2347778887   21   133444443 4678999999999877665321  


Q ss_pred             CeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCC----CcEEEEEeCCeEEEEe
Q 001295          896 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD----QIHFLVVHETQLAIFE  971 (1106)
Q Consensus       896 ~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~d----g~~l~~~~d~~v~i~d  971 (1106)
                            |.|+.....+.  +|.-.-|.                      ..+..+++||+    ++.|....-..-++|.
T Consensus       201 ------~~pd~~~~~~i--~G~~~~~~----------------------~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~  250 (381)
T 3q6k_A          201 ------FKAERPTKFDY--GGKEYEFK----------------------AGIFGITLGDRDSEGNRPAYYLAGSAIKVYS  250 (381)
T ss_dssp             ------GSCCSCEEEEE--TTEEEEEC----------------------CCEEEEEECCCCTTSCCEEEEEESSCSEEEE
T ss_pred             ------CccccCcceEE--CCEEeEec----------------------cCceEEEecCCcCCCCeEEEEEECCCCcEEE
Confidence                  23441111111  22211121                      14678888887    7777764333333443


Q ss_pred             cCCc--------eEeeecccCCCCCCeeEEEEC-CCCCEEEEEEcCCeEEEEEcCC
Q 001295          972 TTKL--------ECVKQWVPRESSAPITHATFS-CDSQLVYACFLDATVCVFSAAN 1018 (1106)
Q Consensus       972 ~~~~--------~~~~~~~~~~h~~~v~~l~~s-~d~~~l~t~s~Dg~i~vwd~~~ 1018 (1106)
                      +.+.        ..+..+-..+-...-..+++. .+|.+.++--....|..|+..+
T Consensus       251 V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~  306 (381)
T 3q6k_A          251 VNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK  306 (381)
T ss_dssp             EEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred             EEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence            3221        112222111111233456675 5777777777788899999875

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=83.20  E-value=17  Score=40.31  Aligned_cols=113  Identities=11%  Similarity=0.053  Sum_probs=61.4

Q ss_pred             cCeeEEEEecCCC-EEEEEcCCCcEEEEeCCCcccccceeecccCCCC-----CCCCCCceEEEcCC----CcEEEE-Ee
Q 001295          895 KRITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT-----PTAQSDTRVQFHQD----QIHFLV-VH  963 (1106)
Q Consensus       895 ~~V~~l~~s~d~~-~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~s~d----g~~l~~-~~  963 (1106)
                      ..-+.|+|.|||. .|+.+...|.|++++..... ....+..+.....     ........++|+|+    +.+.++ +.
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~-~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~   92 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEI-FKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT   92 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCB-CSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCe-eeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence            3457899999996 44455678999999754321 1111111111100     01235678999997    444443 32


Q ss_pred             C------------CeEEEEecCC----------ceEeeecccCCCCCCeeEEEECCCCCEEEEEEcC
Q 001295          964 E------------TQLAIFETTK----------LECVKQWVPRESSAPITHATFSCDSQLVYACFLD 1008 (1106)
Q Consensus       964 d------------~~v~i~d~~~----------~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~D 1008 (1106)
                      +            ..|.-|.+..          .+.+..+...........|+|.|||.+.++.++.
T Consensus        93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~  159 (463)
T 2wg3_C           93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG  159 (463)
T ss_dssp             CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred             CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence            1            1344455532          1233333222223356899999999876666543

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=81.43  E-value=55  Score=34.18  Aligned_cols=159  Identities=9%  Similarity=0.073  Sum_probs=91.7

Q ss_pred             CCCCeeEEEEec---CCCEEEEEe-CCeEEEEEcCCCceee-------eecCCCCCeeEEEEecCCCceEEEeeCCCcEE
Q 001295          809 PEEAVPCFALSK---NDSYVMSAS-GGKISLFNMMTFKTMA-------TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQ  877 (1106)
Q Consensus       809 ~~~~v~~l~~s~---~~~~l~~~s-dg~i~vwd~~~~~~~~-------~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~  877 (1106)
                      ....|.++..-+   +..+++..+ +|.++-..+......+       .+.. ...+..+.... +...|+..+..|.+.
T Consensus        93 ~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~-~~d~ill~T~~G~~~  170 (327)
T 3uc1_A           93 PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCS-AGDDLLLVSANGQSI  170 (327)
T ss_dssp             TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEEC-TTCEEEEEETTSEEE
T ss_pred             CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEec-CCCEEEEEECCCeEE
Confidence            345565554433   467788777 8999988876543221       2332 34566665555 456777788899998


Q ss_pred             EEEee--c---------ceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCccccc----c-eeecccCCCC
Q 001295          878 IYNVR--V---------DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK----N-RFLQIPTGRT  941 (1106)
Q Consensus       878 iwd~~--~---------~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~----~-~~~~~~~~~~  941 (1106)
                      .+...  .         |...-.|. ....|.++...+++..|+.++..|.++.-.+.......    . ..+.... ..
T Consensus       171 rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~-~~  248 (327)
T 3uc1_A          171 RFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDR-RR  248 (327)
T ss_dssp             EEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCT-TT
T ss_pred             EEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecC-CC
Confidence            88876  3         11112232 34567777776677789999999999988776543211    1 1111111 01


Q ss_pred             CCCCCCceEE-EcCCCcEEEEEeCCeEEEEecCC
Q 001295          942 PTAQSDTRVQ-FHQDQIHFLVVHETQLAIFETTK  974 (1106)
Q Consensus       942 ~~~~~i~~~~-~s~dg~~l~~~~d~~v~i~d~~~  974 (1106)
                         ..+..+. ...+...++++.+|.+.-++...
T Consensus       249 ---d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~  279 (327)
T 3uc1_A          249 ---GRLVGALIVDDDSELYAVTSGGGVIRTAARQ  279 (327)
T ss_dssp             ---CSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred             ---CeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence               1233332 33444555557777776666543

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=81.09  E-value=6.6  Score=48.48  Aligned_cols=81  Identities=15%  Similarity=0.088  Sum_probs=51.6

Q ss_pred             CCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEE---eCCCcE
Q 001295          988 APITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG---LSDGGV 1064 (1106)
Q Consensus       988 ~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~---~~Dg~v 1064 (1106)
                      ..+.+++..++..+|++-+.|+++|+|++.+++++.........+..  .. ..  .....|..+.++.+-   ..+|..
T Consensus       236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~~~~~~~--~~-~~--~~~~~~~~~~~i~v~~s~~~~g~F  310 (950)
T 4gq2_M          236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQTILPL--QS-FP--YLTSDHTTNSFIALYYPDNSHGSF  310 (950)
T ss_dssp             TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECCCCCCCS--CC-CC--CEEECSSSTTEEEEEECCSSSCEE
T ss_pred             ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecccccCCcc--cc-cc--ccccCCCcccEEEEEEcCCCCcEE
Confidence            46777888889999999999999999999999998876543322221  11 11  122233334443322   245778


Q ss_pred             EEEeecCCC
Q 001295         1065 HVFEPLESE 1073 (1106)
Q Consensus      1065 ~vW~~~~~~ 1073 (1106)
                      ++|.+....
T Consensus       311 ~~~~~~~~~  319 (950)
T 4gq2_M          311 SIYKLNANA  319 (950)
T ss_dssp             EEEEEEEC-
T ss_pred             EEEEEecCC
Confidence            888775444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	1106
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-18
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-13
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	8e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-08
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-05
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-17
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-15
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	9e-15
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-12
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-10
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-14
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-13
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	9e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-11
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-10
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	8e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	5e-10
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	7e-10
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	7e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.004
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.004
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-09
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	8e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	7e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-08
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.004
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	9e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	7e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	7e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	1e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.001
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	4e-07
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	6e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.004
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	9e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	7e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	6e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	3e-06
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	5e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	5e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-04
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	1e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	6e-04
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-04
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.001
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	0.003

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 85.2 bits (209), Expect = 6e-18
 Identities = 55/376 (14%), Positives = 106/376 (28%), Gaps = 62/376 (16%)

Query: 309 INLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLV 368
           ++L    +P +    ++ +      + P ++   + ++L+  S    + F       L  
Sbjct: 21  LDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSN-DGEYLAT 79

Query: 369 GTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 428
           G N     ++ V S   LV R             L  +      + +  V +SPDG    
Sbjct: 80  GCN-KTTQVYRV-SDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 137

Query: 429 VAYSRHIVQIYSYHGG-------------------------------------DEVRQHL 451
                 +++I+                                          D      
Sbjct: 138 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC 197

Query: 452 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-------AKQYIFEGHEAPV 504
            +   +          P     +     D+ ++VWD+  G       ++     GH+  V
Sbjct: 198 SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSV 257

Query: 505 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF 564
           YSV        Q + S +LD  +K W   N  ++ D + P      + Y           
Sbjct: 258 YSVVFTRDG--QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS-- 313

Query: 565 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG----LPASPRIRFNK 620
                  V         L+   D  + FWD  S   L  +         +  +       
Sbjct: 314 -------VATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGP 366

Query: 621 DGCLLAVSTNDNGIKI 636
           +  + A  + D   +I
Sbjct: 367 EYNVFATGSGDCKARI 382

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.4 bits (173), Expect = 2e-13
 Identities = 26/195 (13%), Positives = 63/195 (32%), Gaps = 31/195 (15%)

Query: 351 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD 410
               ++   P     +  G+    + +W+  +              G     L +     
Sbjct: 205 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET--------------GFLVERLDSENESG 250

Query: 411 PGV--SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV---------GG 459
            G   SV  V+++ DG           V++++    +        ++             
Sbjct: 251 TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF 310

Query: 460 VNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI---- 515
           V  +A +  ++   +++   D+ +  WD  +G    + +GH   V SV   +  ++    
Sbjct: 311 VLSVATTQNDE--YILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEY 368

Query: 516 QFIFSTALDGKIKAW 530
               + + D K + W
Sbjct: 369 NVFATGSGDCKARIW 383

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.0 bits (141), Expect = 1e-09
 Identities = 19/132 (14%), Positives = 45/132 (34%), Gaps = 20/132 (15%)

Query: 810 EEAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTMATFMPPPPAA------------TF 856
           +++V     +++   V+S S    + L+N+      +    P                  
Sbjct: 254 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 313

Query: 857 LAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL------NVLV 910
           +A    ++  I  G  D  +  ++ +       L+GH   +  +A ++        NV  
Sbjct: 314 VATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFA 372

Query: 911 SSGADSQLCVWS 922
           +   D +  +W 
Sbjct: 373 TGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.3 bits (139), Expect = 2e-09
 Identities = 32/255 (12%), Positives = 72/255 (28%), Gaps = 17/255 (6%)

Query: 778  NSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFN 837
            +  GK  A+ A         I     V      E              + +  G  ++  
Sbjct: 130  SPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRI 189

Query: 838  M-MTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV-------RVDEVKSK 889
              +     +  +      T +A  P D   IA G  D ++++++        R+D     
Sbjct: 190  WDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES 249

Query: 890  LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD-- 947
              GH   +  + F+     +VS   D  + +W+      + +           T      
Sbjct: 250  GTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD 309

Query: 948  --TRVQFHQDQIHFLVVHET-QLAIFETTKLECVKQWVPRESS----APITHATFSCDSQ 1000
                V   Q+  + L   +   +  ++      +       +S    A    ++   +  
Sbjct: 310  FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYN 369

Query: 1001 LVYACFLDATVCVFS 1015
            +      D    ++ 
Sbjct: 370  VFATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.7 bits (135), Expect = 8e-09
 Identities = 22/194 (11%), Positives = 56/194 (28%), Gaps = 31/194 (15%)

Query: 419 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVR----QHLEIDAHVGGVNDIAFSHPNKQLCV 474
           +   DG           V+++    G  V     ++     H   V  + F+   + +  
Sbjct: 212 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSV-- 269

Query: 475 ITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI----------QFIFSTALD 524
           ++   D+++K+W+  N   +   +   +    V     ++           ++I S + D
Sbjct: 270 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD 329

Query: 525 GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 584
             +  W   +    +  +       ++A +                        N F   
Sbjct: 330 RGVLFWDKKSGNPLLMLQGHRNSVISVAVANG---------------SSLGPEYNVFATG 374

Query: 585 GDDFSIKFWDMDSV 598
             D   + W    +
Sbjct: 375 SGDCKARIWKYKKI 388

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.4 bits (129), Expect = 4e-08
 Identities = 17/142 (11%), Positives = 36/142 (25%), Gaps = 17/142 (11%)

Query: 351 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD 410
            S  S+ F       ++ G+    + LW + +                 +          
Sbjct: 255 DSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY-------IG 306

Query: 411 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS---- 466
               V  V  + +            V  +    G+ +     +  H   V  +A +    
Sbjct: 307 HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL---MLQGHRNSVISVAVANGSS 363

Query: 467 -HPNKQLCVITCGDDKTIKVWD 487
             P   +   T   D   ++W 
Sbjct: 364 LGPEYNV-FATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (104), Expect = 4e-05
 Identities = 48/333 (14%), Positives = 104/333 (31%), Gaps = 67/333 (20%)

Query: 456 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG---------------- 499
           H   V  + FS+  + L     G +KT +V+  ++G+                       
Sbjct: 61  HTSVVCCVKFSNDGEYLA---TGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSS 117

Query: 500 --HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG 557
              +  + SVC     + +F+ + A D  I+ W  +N    +  +   +   ++ Y   G
Sbjct: 118 PSSDLYIRSVCFSP--DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG 175

Query: 558 TRTYQGFRKRSL---------------------GVVQFDTTKNRFLAAGDDFSIKFWDMD 596
            +   G   R++                      V           A   D +++ WD +
Sbjct: 176 DKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE 235

Query: 597 SVQLLTSIDADGGLPASPR-----IRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN 651
           +  L+  +D++       +     + F +DG  +   + D  +K+    +      +   
Sbjct: 236 TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 295

Query: 652 LAYDASRTSENSKPTISPISAAAAAAATSAGLADR---------AASMVSIPGMNGDVRS 702
            +     T    K  +  ++         +G  DR            ++ + G    V S
Sbjct: 296 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVIS 355

Query: 703 LADVK--------PRITEESNDKS-KVWKLTEL 726
           +A                 S D   ++WK  ++
Sbjct: 356 VAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 388

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 81.7 bits (200), Expect = 5e-17
 Identities = 27/141 (19%), Positives = 54/141 (38%), Gaps = 12/141 (8%)

Query: 392 KVWDL--GACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQ 449
           K+WD+  G C               +N + + P+G+ F         +++      E+  
Sbjct: 209 KLWDVREGMCRQTF-----TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263

Query: 450 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 509
           +   D  + G+  ++FS   + L  +   DD    VWDA    +  +  GH+  V  +  
Sbjct: 264 Y-SHDNIICGITSVSFSKSGRLL--LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV 320

Query: 510 HHKENIQFIFSTALDGKIKAW 530
               +   + + + D  +K W
Sbjct: 321 TD--DGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.5 bits (189), Expect = 1e-15
 Identities = 27/163 (16%), Positives = 54/163 (33%), Gaps = 9/163 (5%)

Query: 763 SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 822
           +  +  L     T    SG   AS   +LW    G+      T +  E  +       N 
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASA--KLWDVREGMCRQ---TFTGHESDINAICFFPNG 238

Query: 823 SYVMSASGG---KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY 879
           +   + S     ++            +        T ++F      ++  G DD +  ++
Sbjct: 239 NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVW 297

Query: 880 NVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
           +    +    L GH  R++ L  +     + +   DS L +W+
Sbjct: 298 DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.8 bits (182), Expect = 9e-15
 Identities = 50/332 (15%), Positives = 98/332 (29%), Gaps = 49/332 (14%)

Query: 330 SQAFSTPEDLPKT---VTRTLNQGSSP-MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRER 385
           SQ  +  + + +      RTL    +   +M +      LL+  +  G + +W+  +  +
Sbjct: 31  SQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNK 89

Query: 386 LVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD 445
           +     +   +  C+       V   G+     I++       V  SR +     Y    
Sbjct: 90  VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCC 149

Query: 446 EVRQHLEIDAHVGGVNDIAFSHPNKQLCV---------------------ITCGDDKTIK 484
                 +I    G      +     Q                        ++   D + K
Sbjct: 150 RFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209

Query: 485 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP 544
           +WD   G  +  F GHE+ + ++C     N     + + D   + +        + Y   
Sbjct: 210 LWDVREGMCRQTFTGHESDINAICFFPNGN--AFATGSDDATCRLFDLRADQELMTYSHD 267

Query: 545 GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI 604
              C   +                   V F  +    LA  DDF+   WD         +
Sbjct: 268 NIICGITS-------------------VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL 308

Query: 605 DADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 636
                  +   +    DG  +A  + D+ +KI
Sbjct: 309 AGHDNRVSC--LGVTDDGMAVATGSWDSFLKI 338

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.3 bits (160), Expect = 4e-12
 Identities = 20/158 (12%), Positives = 49/158 (31%), Gaps = 9/158 (5%)

Query: 859  FHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQL 918
                D  +   G  D+S ++++VR    +    GH   I  + F    N   +   D+  
Sbjct: 191  SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250

Query: 919  CVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET-QLAIFETTKLEC 977
             ++     ++                   T V F +     L  ++     +++  K + 
Sbjct: 251  RLFDLRADQELMTYSHDNIICGI------TSVSFSKSGRLLLAGYDDFNCNVWDALKADR 304

Query: 978  VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1015
                        ++    + D   V     D+ + +++
Sbjct: 305  AGVL--AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.4 bits (142), Expect = 8e-10
 Identities = 22/181 (12%), Positives = 44/181 (24%), Gaps = 26/181 (14%)

Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
            V  +  +PD  LF         +++    G   +       H   +N I F        
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ---TFTGHESDINAICFFPNGNAF- 241

Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
             T  DD T +++D     +   +               ++ + + +   D     W   
Sbjct: 242 -ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300

Query: 534 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 593
                          + +  + DG                             D  +K W
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTDDG---------------------MAVATGSWDSFLKIW 339

Query: 594 D 594
           +
Sbjct: 340 N 340

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.0 bits (180), Expect = 1e-14
 Identities = 41/307 (13%), Positives = 101/307 (32%), Gaps = 14/307 (4%)

Query: 616 IRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAA 675
           + F+    ++  ++ D  IK+     G    RT +   +  S    +   +   +++ +A
Sbjct: 23  VIFHPVFSVMVSASEDATIKVWDYETG-DFERTLK--GHTDSVQDISFDHSGKLLASCSA 79

Query: 676 AAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSL 735
                         + ++ G + +V S++ +       S  + K  K+ E+      ++ 
Sbjct: 80  DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF 139

Query: 736 RLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPP 795
                              G  I + +++    +W     E  +  +    V   +    
Sbjct: 140 TGHREWVRMVR----PNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECIS--- 192

Query: 796 SGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTMATFMPPPPAA 854
                 +  +  +           K   +++S S    I ++++ T   + T +      
Sbjct: 193 --WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWV 250

Query: 855 TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA 914
             + FH      I    DD ++++++ +       L  H   +T L F      +V+   
Sbjct: 251 RGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV 309

Query: 915 DSQLCVW 921
           D  + VW
Sbjct: 310 DQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.1 bits (162), Expect = 2e-12
 Identities = 26/209 (12%), Positives = 64/209 (30%), Gaps = 23/209 (11%)

Query: 453 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHK 512
           +  H   V  + F      +  ++  +D TIKVWD   G  +   +GH   V  +   H 
Sbjct: 13  LSGHRSPVTRVIFHPVFSVM--VSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 70

Query: 513 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM--------AYSADGTRTYQGF 564
             +    S  +  K+  +        +          ++        + S D T      
Sbjct: 71  GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130

Query: 565 R-----------KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPAS 613
           +           +  + +V+ +       +  +D +++ W + + +    +     +   
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVEC 190

Query: 614 PRIRFNKDGCLLAVSTNDNGIKILATSDG 642
             I +  +    ++S         +   G
Sbjct: 191 --ISWAPESSYSSISEATGSETKKSGKPG 217

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.5 bits (132), Expect = 1e-08
 Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
            V  V++   G           ++++ Y     ++    ++AH   V  + F      + 
Sbjct: 249 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK---TLNAHEHFVTSLDFHKTAPYV- 304

Query: 474 VITCGDDKTIKVWD 487
            +T   D+T+KVW+
Sbjct: 305 -VTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.0 bits (128), Expect = 4e-08
 Identities = 47/241 (19%), Positives = 76/241 (31%), Gaps = 17/241 (7%)

Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
            V RVI+ P  S+   A     ++++ Y  GD  R    +  H   V DI+F H  K L 
Sbjct: 19  PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGKLLA 75

Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
             +      +  +      +      H     S+ P+       I S + D  IK W   
Sbjct: 76  SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG----DHIVSASRDKTIKMWEVQ 131

Query: 534 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD---FSI 590
                  +     W   +  + DGT        +++ V    T + +            I
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191

Query: 591 KFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE 650
            +    S   ++          S   +  K G  L   + D  IK+   S G   L T  
Sbjct: 192 SWAPESSYSSISEAT------GSETKKSGKPGPFLLSGSRDKTIKMWDVSTG-MCLMTLV 244

Query: 651 N 651
            
Sbjct: 245 G 245

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.6 bits (127), Expect = 6e-08
 Identities = 20/137 (14%), Positives = 44/137 (32%), Gaps = 20/137 (14%)

Query: 814 PCFALSKNDSYVMSASG-GKISLFNMMTFKTMATFMPPPPAATFLAFHPQ---------- 862
                +++ + + S S    + ++ + T +  A           +++ P+          
Sbjct: 147 RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT 206

Query: 863 ---------DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG 913
                        +  G  D +I++++V        L GH   + G+ F      ++S  
Sbjct: 207 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA 266

Query: 914 ADSQLCVWSSDGWEKQK 930
            D  L VW        K
Sbjct: 267 DDKTLRVWDYKNKRCMK 283

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.1 bits (105), Expect = 3e-05
 Identities = 29/172 (16%), Positives = 66/172 (38%), Gaps = 10/172 (5%)

Query: 855  TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA 914
            T + FHP   +++    +D++I++++    + +  LKGH+  +  ++F H+  +L S  A
Sbjct: 21   TRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA 79

Query: 915  DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTK 974
            D  + +W   G+E  +          + +   +        +   + + E Q        
Sbjct: 80   DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ-------- 131

Query: 975  LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1026
                           +     + D  L+ +C  D TV V+  A  + +  + 
Sbjct: 132  -TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR 182

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.2 bits (100), Expect = 1e-04
 Identities = 22/161 (13%), Positives = 48/161 (29%), Gaps = 9/161 (5%)

Query: 887  KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQS 946
            K  L GH   +T + F    +V+VS+  D+ + VW  +        F +   G T + Q 
Sbjct: 10   KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYE-----TGDFERTLKGHTDSVQD 64

Query: 947  DTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF 1006
             +     +           +L  F+                  ++  +   +   + +  
Sbjct: 65   ISFDHSGKLLASCSADMTIKLWDFQG----FECIRTMHGHDHNVSSVSIMPNGDHIVSAS 120

Query: 1007 LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAA 1047
             D T+ ++                    V  +    L+ + 
Sbjct: 121  RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASC 161

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.9 bits (169), Expect = 4e-13
 Identities = 31/178 (17%), Positives = 67/178 (37%), Gaps = 6/178 (3%)

Query: 855  TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK--SKLKGHSKRITGLAFSHALNVLVSS 912
            +  A++  D   IAI  ++  + IY    ++     +LK H+ ++TG+ ++   N +V+ 
Sbjct: 11   SCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69

Query: 913  GADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFET 972
            G D    VW+  G   +    +          +     +               +  FE 
Sbjct: 70   GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS---RVISICYFEQ 126

Query: 973  TKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAY 1030
                 V + + +   + +    +  +S L+ A   D    +FSA   ++  R  P+ +
Sbjct: 127  ENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPW 184

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.0 bits (159), Expect = 9e-12
 Identities = 25/155 (16%), Positives = 50/155 (32%), Gaps = 3/155 (1%)

Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
            ++   W+ D +   +  + H V IY   G   V+ H E+  H G V  + ++  + ++ 
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVH-ELKEHNGQVTGVDWAPDSNRI- 66

Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
            +TCG D+   VW       +           + C     N +     +    I    ++
Sbjct: 67  -VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125

Query: 534 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 568
                   +   +   +   S D           S
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 160

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.3 bits (113), Expect = 4e-06
 Identities = 22/368 (5%), Positives = 77/368 (20%), Gaps = 26/368 (7%)

Query: 572 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 631
             ++  + +     ++  +  ++    + +   +          + +  D   +     D
Sbjct: 13  HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD 72

Query: 632 NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMV 691
               +                   A+R    +         + +   +           V
Sbjct: 73  RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWV 132

Query: 692 SIPGMNGDVRSLADVKPRITEE------SNDKSKVWKLTELSEPNQCRSLRLPENLRATK 745
                     ++  +              + K +++         +         +    
Sbjct: 133 CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMP-FG 191

Query: 746 ISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 805
                 ++S   +  +  +A      W   +              L      + +    +
Sbjct: 192 ELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTV----------CLADADKKMAVATLAS 241

Query: 806 DSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN 865
           ++ P   +         S V +       LF   +     +F          +       
Sbjct: 242 ETLP---LLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSS-QRGLTA 297

Query: 866 IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH----ALNVLVSSGADSQLCVW 921
                  D                   H   ++ ++         +   ++G D  + +W
Sbjct: 298 RERFQNLDKKASSEG-SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIW 356

Query: 922 SSDGWEKQ 929
                E  
Sbjct: 357 DVRSLESA 364

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.5 bits (111), Expect = 6e-06
 Identities = 32/247 (12%), Positives = 65/247 (26%), Gaps = 27/247 (10%)

Query: 353 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 412
            +          LL  G+      ++    +E         W        L        G
Sbjct: 143 TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG 202

Query: 413 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 472
             V+ V +S +GS          V +        V       +    +  + F   +   
Sbjct: 203 -WVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL---ASETLPLLAVTFITESS-- 256

Query: 473 CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 532
            ++  G D    ++   + A +  F G            +          LD K  +   
Sbjct: 257 -LVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQS--SQRGLTARERFQNLDKKASSEGS 313

Query: 533 DNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF 592
              G+ +D        + ++  + G                     ++F   G D  +  
Sbjct: 314 AAAGAGLD-SLHKNSVSQISVLSGG-----------------KAKCSQFCTTGMDGGMSI 355

Query: 593 WDMDSVQ 599
           WD+ S++
Sbjct: 356 WDVRSLE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.8 bits (96), Expect = 3e-04
 Identities = 11/53 (20%), Positives = 16/53 (30%), Gaps = 2/53 (3%)

Query: 444 GDEVRQHLEIDAHVGGVNDIAFSHPNKQLC--VITCGDDKTIKVWDATNGAKQ 494
           G           H   V+ I+     K  C    T G D  + +WD  +    
Sbjct: 312 GSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 364

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (152), Expect = 5e-11
 Identities = 29/197 (14%), Positives = 50/197 (25%), Gaps = 20/197 (10%)

Query: 453 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHK 512
           +  H   V          ++  ++  DD T+KVW A  G       GH   V+S      
Sbjct: 12  LKGHDDHVIT-CLQFCGNRI--VSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN 68

Query: 513 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT-------------R 559
             I       L                                 G+             +
Sbjct: 69  IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQ 128

Query: 560 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN 619
                      V        R ++   DF +K WD ++   L ++        +      
Sbjct: 129 CLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGH----TNRVYSLQ 184

Query: 620 KDGCLLAVSTNDNGIKI 636
            DG  +   + D  I++
Sbjct: 185 FDGIHVVSGSLDTSIRV 201

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (143), Expect = 6e-10
 Identities = 44/321 (13%), Positives = 93/321 (28%), Gaps = 44/321 (13%)

Query: 319 SFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLW 378
           +  GH+     SQ          T        +            T  +   ++ +  + 
Sbjct: 52  TLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVV 111

Query: 379 EVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQI 438
                  L + + +        M   AA+          V  + D  +  V        +
Sbjct: 112 SGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVK-VWDPETETCL 170

Query: 439 YSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 498
           ++  G       L+ D                   V++   D +I+VWD   G   +   
Sbjct: 171 HTLQGHTNRVYSLQFDGI----------------HVVSGSLDTSIRVWDVETGNCIHTLT 214

Query: 499 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT 558
           GH++    +          + S   D  +K W           + P +  + +       
Sbjct: 215 GHQSLTSGMELKDN----ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC----- 265

Query: 559 RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS---VQLLTSIDADGGLPASPR 615
                              KN  + + DD ++K WD+ +   ++ L ++++ G      R
Sbjct: 266 ---------------LQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWR 310

Query: 616 IRFNKDGCLLAVSTNDNGIKI 636
           IR +    + AV + +   + 
Sbjct: 311 IRASNTKLVCAVGSRNGTEET 331

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (123), Expect = 2e-07
 Identities = 25/152 (16%), Positives = 49/152 (32%), Gaps = 18/152 (11%)

Query: 389 RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR 448
            + +VWD+   +      +    G            ++     +   V+I+    G  ++
Sbjct: 197 TSIRVWDVETGNC-----IHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQ 251

Query: 449 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-----EGHEAP 503
                + H   V  + F+       VIT  DD T+K+WD   G            G    
Sbjct: 252 TLQGPNKHQSAVTCLQFNKN----FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGV 307

Query: 504 VYSVCPHHKENIQFIFSTALDG--KIKAWLYD 533
           V+ +   +          + +G  + K  + D
Sbjct: 308 VWRIRASN--TKLVCAVGSRNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 6e-05
 Identities = 17/129 (13%), Positives = 47/129 (36%), Gaps = 10/129 (7%)

Query: 805 TDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDN 864
           T +  +       L  ++  V   +   + ++++ T + + T   P    + +     + 
Sbjct: 212 TLTGHQSLTSGMELK-DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK 270

Query: 865 NIIAIGMDDSSIQIYNVRVDEVKSKLK-----GHSKRITGLAFSHALNVLVSSGAD---- 915
           N +    DD ++++++++  E    L      G    +  +  S+   V      +    
Sbjct: 271 NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEE 330

Query: 916 SQLCVWSSD 924
           ++L V   D
Sbjct: 331 TKLLVLDFD 339

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 8e-04
 Identities = 25/210 (11%), Positives = 57/210 (27%), Gaps = 29/210 (13%)

Query: 858  AFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQ 917
                   N I  G DD+++++++    +    L GH+  +                 D+ 
Sbjct: 22   CLQF-CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR-----------DNI 69

Query: 918  LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLEC 977
            +   S+D   K  N              S  R     ++       +  L +++    +C
Sbjct: 70   IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQC 129

Query: 978  VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSS 1037
            +   +   ++              V +   D  V V+          +            
Sbjct: 130  LHVLMGHVAAVRCVQYDGRR----VVSGAYDFMVKVWDPETETCLHTLQG---------- 175

Query: 1038 SNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1067
               H   + +   +      G  D  + V+
Sbjct: 176  ---HTNRVYSLQFDGIHVVSGSLDTSIRVW 202

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.6 bits (145), Expect = 5e-10
 Identities = 25/205 (12%), Positives = 55/205 (26%), Gaps = 26/205 (12%)

Query: 454 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-----------GHEA 502
            AH   +  ++  +       ++C  D  +KVWD      +   +            H  
Sbjct: 11  KAHDADIFSVSACNSF----TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66

Query: 503 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ 562
            V          +  + +T+  G +  +         D      +       +D  +   
Sbjct: 67  DVLQAIERDAFELCLVATTSFSGDLLFYRITRE----DETKKVIFEKLDLLDSDMKKH-- 120

Query: 563 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM-----DSVQLLTSIDADGGLPASPRIR 617
            F     G        +R +A     +   W       +S  L  +      L  +    
Sbjct: 121 SFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESP 180

Query: 618 FNKDGCLLAVSTNDNGIKILATSDG 642
                   +V  ++ G+     ++G
Sbjct: 181 MTPSQFATSVDISERGLIATGFNNG 205

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.0 bits (120), Expect = 4e-07
 Identities = 52/447 (11%), Positives = 115/447 (25%), Gaps = 68/447 (15%)

Query: 493 KQYI-----FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW 547
           K +I      + H+A ++SV   +     F  S + DG +K W    L +    +     
Sbjct: 1   KVFIATANAGKAHDADIFSVSACNS----FTVSCSGDGYLKVWDNKLLDNENPKDKSYSH 56

Query: 548 CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA-AGDDFSIKFWDMDSV-QLLTSID 605
                                L  ++ D  +   +A       + F+ +    +    I 
Sbjct: 57  F---------VHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIF 107

Query: 606 ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT--SDGIRLLRTFENLAYDASRTSENS 663
               L  S   + +        S +      L      G   +  F   A +++  + N 
Sbjct: 108 EKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW 167

Query: 664 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLA-DVKPRITEESNDKSKVWK 722
            PT+                 +   ++ S    +    S+    +  I    N+ +    
Sbjct: 168 SPTL-----------------ELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQIS 210

Query: 723 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGK 782
                 P      +      +  I  + F+  G+ +     +          TE      
Sbjct: 211 ELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIG 270

Query: 783 ATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFK 842
           + +               ++ V                 ++   +   GK+  +++ T +
Sbjct: 271 SLSVPTHSSQASLGEFAHSSWVM--------SLSFNDSGETLCSAGWDGKLRFWDVKTKE 322

Query: 843 TMATFM----PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT 898
            + T              LA     +++   G+ D                +K   K   
Sbjct: 323 RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD----------------VKFLKKGWR 366

Query: 899 GLAFSHALNVLVSSGADSQLCVWSSDG 925
               +     L     D  +  +   G
Sbjct: 367 SGMGADLNESLCCVCLDRSIRWFREAG 393

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.9 bits (117), Expect = 1e-06
 Identities = 25/189 (13%), Positives = 54/189 (28%), Gaps = 4/189 (2%)

Query: 320 FTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWE 379
                 S+S +  +S   +L  TV   +       S+D     + L+  G N G + + E
Sbjct: 154 HPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RGLIATGFNNGTVQISE 211

Query: 380 VGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIY 439
           + +   L     +   +   +            +       +  G +             
Sbjct: 212 LSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGS 271

Query: 440 SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG 499
                   +  L   AH   V  ++F+   +   + + G D  ++ WD     +      
Sbjct: 272 LSVPTHSSQASLGEFAHSSWVMSLSFNDSGE--TLCSAGWDGKLRFWDVKTKERITTLNM 329

Query: 500 HEAPVYSVC 508
           H   +    
Sbjct: 330 HCDDIEIEE 338

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.8 bits (109), Expect = 1e-05
 Identities = 42/402 (10%), Positives = 100/402 (24%), Gaps = 42/402 (10%)

Query: 570 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST 629
            +       +  ++   D  +K WD   +      D         +   +    L A+  
Sbjct: 16  DIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVH-KSGLHHVDVLQAIER 74

Query: 630 NDNGIKILATS--DG-IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADR 686
           +   + ++AT+   G +   R             +           +  A    A     
Sbjct: 75  DAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRL 134

Query: 687 AASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 746
            +  +    + G       +           S     +   E        +  +  AT +
Sbjct: 135 LSHRLVATDVKGTTY----IWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSV 190

Query: 747 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 806
                  S   ++A   N   +      T R                  S I  +N +  
Sbjct: 191 DI-----SERGLIATGFNNGTVQISELSTLRPL---------YNFESQHSMINNSNSIRS 236

Query: 807 SNPEEAVPCFALSKNDSYVMSASGGKISLFNMM--------TFKTMATFMPPPPAATFLA 858
                     A++ + +     +  +      +        + +              L+
Sbjct: 237 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS 296

Query: 859 FHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI----TGLAFSHALNVLVSSGA 914
           F+      +     D  ++ ++V+  E  + L  H   I      LA     + L   G 
Sbjct: 297 FNDS-GETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG- 354

Query: 915 DSQLCVWSSDGWEKQKNRFLQIPTGRT-PTAQSDTRVQFHQD 955
                V+     +K     +      +      D  +++ ++
Sbjct: 355 -----VFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE 391

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (96), Expect = 4e-04
 Identities = 14/154 (9%), Positives = 39/154 (25%), Gaps = 20/154 (12%)

Query: 456 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE-- 513
           HV  +  I        L   T      +  +  T   +       +  +           
Sbjct: 65  HVDVLQAIERDAFELCLVA-TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFW 123

Query: 514 -----------NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ 562
                          + +T + G    W +         +         + + +   T +
Sbjct: 124 ALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFA-----DESNSLTLNWSPTLELQGTVE 178

Query: 563 GFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDM 595
                S      D ++   +A G ++ +++  ++
Sbjct: 179 SPMTPSQFATSVDISERGLIATGFNNGTVQISEL 212

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.9 bits (143), Expect = 7e-10
 Identities = 10/79 (12%), Positives = 27/79 (34%), Gaps = 6/79 (7%)

Query: 456 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK-QYIFEGHEAPVYSVCPHHKEN 514
           H   ++ I   + +  +  +  G +    +++  +G             ++SV    K  
Sbjct: 280 HHTNLSAITTFYVSDNI--LVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-- 335

Query: 515 IQFIFSTALDGKIKAWLYD 533
              + +   DG+    + D
Sbjct: 336 -TLVAAVEKDGQSFLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.1 bits (128), Expect = 5e-08
 Identities = 25/178 (14%), Positives = 43/178 (24%), Gaps = 25/178 (14%)

Query: 447 VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 506
           V Q   +  H+  V        N    VIT  DDK I+V+D+ N        GH+  V++
Sbjct: 2   VPQRTTLRGHMTSVITCLQFEDNY---VITGADDKMIRVYDSINKKFLLQLSGHDGGVWA 58

Query: 507 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 566
           +   H      + S               GS                             
Sbjct: 59  LKYAHG---GILVS---------------GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCL 100

Query: 567 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCL 624
                +         +    D ++  W +     +     +   P            +
Sbjct: 101 D----IVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV 154

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.3 bits (118), Expect = 7e-07
 Identities = 14/90 (15%), Positives = 31/90 (34%), Gaps = 3/90 (3%)

Query: 836 FNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE-VKSKLKGHS 894
                      F       + +      +NI+  G ++    IYN+R  + V + +   +
Sbjct: 266 RGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQ-FNIYNLRSGKLVHANILKDA 324

Query: 895 KRITGLAFSHALNVLVSSGADSQLCVWSSD 924
            +I  + F     ++ +   D Q  +   D
Sbjct: 325 DQIWSVNFKGK-TLVAAVEKDGQSFLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.0 bits (107), Expect = 2e-05
 Identities = 25/150 (16%), Positives = 48/150 (32%), Gaps = 6/150 (4%)

Query: 863  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
            ++N +  G DD  I++Y+    +   +L GH   +  L ++H   +LVS   D  + VW 
Sbjct: 22   EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD 80

Query: 923  SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 982
                           T R          ++   +       +  L +++  K   V    
Sbjct: 81   IKKGCCTHVFEGHNSTVRCLDIV-----EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHG 135

Query: 983  PRESSAPITHATFSCDSQLVYACFLDATVC 1012
                   + H        +       A+V 
Sbjct: 136  EEHDYPLVFHTPEENPYFVGVLRGHMASVR 165

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (137), Expect = 2e-09
 Identities = 28/206 (13%), Positives = 58/206 (28%), Gaps = 22/206 (10%)

Query: 448 RQHLE-IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 506
           R  L+ I         +     + Q  +++   D TIK+WD      + I  GH   V  
Sbjct: 2   RHSLQRIHCRSETSKGVYCLQYDDQK-IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLC 60

Query: 507 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR------- 559
           +    +  I     + +                  EA              ++       
Sbjct: 61  LQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVW 120

Query: 560 ---------TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL 610
                      +        V   D      ++A  D +IK W+  + + + +++     
Sbjct: 121 DMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK-- 178

Query: 611 PASPRIRFNKDGCLLAVSTNDNGIKI 636
                        L+   ++DN I++
Sbjct: 179 --RGIACLQYRDRLVVSGSSDNTIRL 202

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (115), Expect = 1e-06
 Identities = 34/136 (25%), Positives = 53/136 (38%), Gaps = 18/136 (13%)

Query: 459 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI 518
           G          +   V++   D TI++WD   GA   + EGH      +    + + + I
Sbjct: 176 GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGH----EELVRCIRFDNKRI 231

Query: 519 FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 578
            S A DGKIK W  D + +       G  C          RT      R   + QFD  +
Sbjct: 232 VSGAYDGKIKVW--DLVAALDPRAPAGTLCL---------RTLVEHSGRVFRL-QFD--E 277

Query: 579 NRFLAAGDDFSIKFWD 594
            + +++  D +I  WD
Sbjct: 278 FQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 3e-06
 Identities = 25/131 (19%), Positives = 42/131 (32%), Gaps = 15/131 (11%)

Query: 801 TNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAF 859
           T +   +          L   D  V+S S    I L+++     +            +  
Sbjct: 167 TCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE---LVRC 223

Query: 860 HPQDNNIIAIGMDDSSIQIYNVRVDEVKSK---------LKGHSKRITGLAFSHALNVLV 910
              DN  I  G  D  I+++++                 L  HS R+  L F      +V
Sbjct: 224 IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE--FQIV 281

Query: 911 SSGADSQLCVW 921
           SS  D  + +W
Sbjct: 282 SSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 1e-04
 Identities = 15/102 (14%), Positives = 31/102 (30%), Gaps = 15/102 (14%)

Query: 392 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 451
           ++WD+   +      L    G          D            ++++      + R   
Sbjct: 201 RLWDIECGAC-----LRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPA 255

Query: 452 E------IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 487
                  +  H G V  + F    +   +++   D TI +WD
Sbjct: 256 GTLCLRTLVEHSGRVFRLQF-DEFQ---IVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 0.004
 Identities = 28/206 (13%), Positives = 63/206 (30%), Gaps = 25/206 (12%)

Query: 863  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
            D+  I  G+ D++I+I++    E K  L GH+  +  L +   + +             S
Sbjct: 24   DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVII-----------TGS 72

Query: 923  SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 982
            SD   +  +                       + +      +  +A+++      +    
Sbjct: 73   SDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRR 132

Query: 983  PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHP 1042
                           D + + +   D T+ V++ +  +              V + N H 
Sbjct: 133  VLVGH-RAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEF-------------VRTLNGHK 178

Query: 1043 LVIAAHPQEPNEFALGLSDGGVHVFE 1068
              IA           G SD  + +++
Sbjct: 179  RGIACLQYRDRLVVSGSSDNTIRLWD 204

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 3e-09
 Identities = 18/117 (15%), Positives = 40/117 (34%), Gaps = 9/117 (7%)

Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
            +  + + P G    V      V++   +         ++  H   V  + F++  K   
Sbjct: 226 QIFSLGYCPTGEWLAVGMESSNVEVLHVN----KPDKYQLHLHESCVLSLKFAYCGKWF- 280

Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 530
            ++ G D  +  W    GA  +      + V S      +  ++I + + D K   +
Sbjct: 281 -VSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDD--KYIVTGSGDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 1e-07
 Identities = 8/131 (6%), Positives = 24/131 (18%), Gaps = 2/131 (1%)

Query: 792 WQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPP 851
                 +     +   +    +          ++             +            
Sbjct: 206 TVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHE 265

Query: 852 PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVS 911
                L F             D+ +  +         +    S  +     S     +V+
Sbjct: 266 SCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVT 323

Query: 912 SGADSQLCVWS 922
              D +  V+ 
Sbjct: 324 GSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 1e-07
 Identities = 31/314 (9%), Positives = 77/314 (24%), Gaps = 49/314 (15%)

Query: 345 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDL--GACSMP 402
            TLN G    ++      + +               G +        KVWD+       P
Sbjct: 46  NTLNHGEVVCAVTISNPTRHVY-------------TGGK-----GCVKVWDISHPGNKSP 87

Query: 403 LQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVND 462
           +      +    +      PDG    V      + I+         +     +       
Sbjct: 88  VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYAL 147

Query: 463 IAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA 522
                        + G+     + +     +  + +       + C     +   +++  
Sbjct: 148 AISPDSKVCFSCCSDGNIAVWDLHN-----QTLVRQFQGHTDGASCIDISNDGTKLWTGG 202

Query: 523 LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV----------- 571
           LD  +++W          ++       ++ Y   G     G    ++ V           
Sbjct: 203 LDNTVRSWDLREGRQLQQHDFTS-QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL 261

Query: 572 ---------VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG 622
                    ++F      F++ G D  +  W       +        + +      + D 
Sbjct: 262 HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLS---CDISVDD 318

Query: 623 CLLAVSTNDNGIKI 636
             +   + D    +
Sbjct: 319 KYIVTGSGDKKATV 332

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (119), Expect = 6e-07
 Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 6/70 (8%)

Query: 418 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC 477
           + ++  G  F      +++  +    G  + Q          V     S  +K +  +T 
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS----KESSSVLSCDISVDDKYI--VTG 324

Query: 478 GDDKTIKVWD 487
             DK   V++
Sbjct: 325 SGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 0.004
 Identities = 17/139 (12%), Positives = 34/139 (24%), Gaps = 27/139 (19%)

Query: 456 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI 515
               +  + +    + L V       +       N   +Y    HE+ V S+   +    
Sbjct: 223 FTSQIFSLGYCPTGEWLAVGME---SSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGK- 278

Query: 516 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 575
            +  ST  D  + AW     G+ +          +   S D                   
Sbjct: 279 -WFVSTGKDNLLNAWRTPY-GASIFQSKESSSVLSCDISVDD------------------ 318

Query: 576 TTKNRFLAAGDDFSIKFWD 594
                 +    D     ++
Sbjct: 319 ---KYIVTGSGDKKATVYE 334

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 56.5 bits (134), Expect = 5e-09
 Identities = 15/101 (14%), Positives = 31/101 (30%), Gaps = 6/101 (5%)

Query: 456 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKEN 514
           H   +  ++ S   K L   +   +  I  WD + G    +F + H   +  +    K +
Sbjct: 11  HNKAITALSSSADGKTL--FSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD 68

Query: 515 IQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA 555
           +  +     D  +K       G         +  +     A
Sbjct: 69  LFTVSW---DDHLKVVPAGGSGVDSSKAVANKLSSQPLGLA 106

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.7 bits (98), Expect = 2e-04
 Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 420 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 479
           WSPD          + V +++ +   +    ++    +  VN + + +      +++ G 
Sbjct: 232 WSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET---TIVSAGQ 288

Query: 480 DKTIKVWD 487
           D  IK W+
Sbjct: 289 DSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.7 bits (98), Expect = 2e-04
 Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 4/66 (6%)

Query: 467 HPNKQLCVITCGDDKTIKVWDATNGAKQ--YIFEGHEAPVYSVCPHHKENIQFIFSTALD 524
                + + T   D ++ VW+    +     I   H     +      E    I S   D
Sbjct: 232 WSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET--TIVSAGQD 289

Query: 525 GKIKAW 530
             IK W
Sbjct: 290 SNIKFW 295

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.9 bits (96), Expect = 2e-04
 Identities = 11/46 (23%), Positives = 18/46 (39%)

Query: 885 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK 930
            +     GH+K IT L+ S     L S+ A+  +  W        +
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNR 48

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.4 bits (92), Expect = 8e-04
 Identities = 15/92 (16%), Positives = 27/92 (29%), Gaps = 2/92 (2%)

Query: 833 ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-- 890
                               A         DN  +A G  D+S+ ++N+        +  
Sbjct: 205 PYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK 264

Query: 891 KGHSKRITGLAFSHALNVLVSSGADSQLCVWS 922
             H+              +VS+G DS +  W+
Sbjct: 265 GAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.2 bits (131), Expect = 2e-08
 Identities = 29/329 (8%), Positives = 83/329 (25%), Gaps = 73/329 (22%)

Query: 355 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVS 414
            +   P +  LL             + S +  +     V+     +  +           
Sbjct: 16  DIKIIPSKSLLL-------------ITSWDGSL----TVYKFDIQAKNVDLLQSLRYKHP 58

Query: 415 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEI--------------------- 453
           +    +  +  L     +     +     G    Q L                       
Sbjct: 59  LLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAA 118

Query: 454 ------------------------DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT 489
                                   +++   V +  F+       +I   ++  ++ +   
Sbjct: 119 SWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLP 178

Query: 490 NGAKQYIFEGHEAPVYSVCPH--HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW 547
                          Y +       +  +    +++DG++    +D+ G   +     + 
Sbjct: 179 LCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN---SSKR 235

Query: 548 CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD 607
                +  +   T   +   S   ++F         AG D  I  W++ + + + +    
Sbjct: 236 FAFRCHRLNLKDTNLAYPVNS---IEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA-- 290

Query: 608 GGLPASPRIRFNKDGCLLAVSTNDNGIKI 636
                   ++      +L ++T+D+  K 
Sbjct: 291 -KFNEDSVVKIACSDNILCLATSDDTFKT 318

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.3 bits (126), Expect = 7e-08
 Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 6/77 (7%)

Query: 449 QHLEI-DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE---GHEAPV 504
           Q ++I  A    ++DI        L  +    D ++ V+     AK         ++ P+
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLL--LITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPL 59

Query: 505 YSVCPHHKENIQFIFST 521
                    ++Q    T
Sbjct: 60  LCCNFIDNTDLQIYVGT 76

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.6 bits (119), Expect = 5e-07
 Identities = 21/129 (16%), Positives = 36/129 (27%), Gaps = 19/129 (14%)

Query: 415 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEV------------RQHLEIDAHVGGVND 462
            +  +   +   +  +     V +  +    +             R +L+       VN 
Sbjct: 197 RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNS 256

Query: 463 IAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFST 521
           I FS  +K L   T G D  I  W+     K   F   +E  V  +          +   
Sbjct: 257 IEFSPRHKFLY--TAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDN----ILCLA 310

Query: 522 ALDGKIKAW 530
             D   K  
Sbjct: 311 TSDDTFKTN 319

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.5 bits (116), Expect = 1e-06
 Identities = 31/263 (11%), Positives = 75/263 (28%), Gaps = 19/263 (7%)

Query: 414 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 473
            ++ +   P  SL  +      + +Y +    +    L+   +   +    F        
Sbjct: 13  YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQ- 71

Query: 474 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 533
            I  G  +   +     G+  +    +      +C   K     + + + DG I+     
Sbjct: 72  -IYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPR 130

Query: 534 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 593
           N G  V          T   +   T                    +R +   ++  ++++
Sbjct: 131 NYGDGVIAVKNLNSNNTKVKNKIFTMDTNS---------------SRLIVGMNNSQVQWF 175

Query: 594 DMDSVQLLTSIDADGGLPASPRIR--FNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN 651
            +   +       + GL    R      K+    A S+ D  + +    D      + + 
Sbjct: 176 RLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR 235

Query: 652 LAYDASRTSENSKPTISPISAAA 674
            A+   R +        P+++  
Sbjct: 236 FAFRCHRLNLKDTNLAYPVNSIE 258

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 54.4 bits (129), Expect = 4e-08
 Identities = 39/376 (10%), Positives = 76/376 (20%), Gaps = 37/376 (9%)

Query: 572 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPR-IRFNKDGCLLAVSTN 630
                     +      ++   D+ S  +  S          P       D     V  N
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK--FGPGTAMMAPDNRTAYVLNN 59

Query: 631 DNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASM 690
             G       D  +        +             ISP      A        +    +
Sbjct: 60  HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVV 119

Query: 691 VSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLI 750
                         + KP  T     +  +                              
Sbjct: 120 KPPRLEVFSTADGLEAKPVRTFPMPRQVYLM----------------------------R 151

Query: 751 FTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPE 810
             + G+  +A        +   + T                         +     S   
Sbjct: 152 AADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML- 210

Query: 811 EAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIG 870
                           +         ++ T KT            F       +      
Sbjct: 211 -YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIY- 268

Query: 871 MDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK 930
              + +  Y+++  ++             +AF    + L   G  + L V++ D  EK K
Sbjct: 269 GVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVK 327

Query: 931 NRFLQIPTGRTPTAQS 946
           N  +++P G   T   
Sbjct: 328 N--IKLPGGDMSTTTP 341

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 52.0 bits (123), Expect = 2e-07
 Identities = 30/305 (9%), Positives = 68/305 (22%), Gaps = 20/305 (6%)

Query: 344 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPL 403
           +  +     P +    P  +T  ++  + GDI   ++ + +     N             
Sbjct: 33  SCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMY 92

Query: 404 QAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDI 463
             A+   P         +P   L      +               + +        V  +
Sbjct: 93  SFAI--SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLM 150

Query: 464 AFSHPNKQLC------VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQF 517
             +              +     K        N  ++          +       E    
Sbjct: 151 RAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML 210

Query: 518 IFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 577
                     +     +L             T     AD T  Y              + 
Sbjct: 211 YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELY---------FTGLRSP 261

Query: 578 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKIL 637
           K+     G    +  +D+   +L+ + +          + F+K G  L +    N + + 
Sbjct: 262 KDPNQIYGVLNRLAKYDLKQRKLIKAANL-DHTYYC--VAFDKKGDKLYLGGTFNDLAVF 318

Query: 638 ATSDG 642
                
Sbjct: 319 NPDTL 323

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 47.8 bits (112), Expect = 4e-06
 Identities = 28/278 (10%), Positives = 64/278 (23%), Gaps = 49/278 (17%)

Query: 350 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVK 409
           G S  S    P     +    N           +   +    +V+               
Sbjct: 88  GRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRL----EVFSTADGLEAKPVRTFP 142

Query: 410 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYS------YHGGDEVRQ-----------HLE 452
            P   V  +  + DGSL+      + + + +          +  R+             +
Sbjct: 143 MPR-QVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQ 201

Query: 453 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD-ATNGAKQYIFEGHEAPVYSVCPHH 511
              H   +        + +    T          D  T       F       ++     
Sbjct: 202 SPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSP 261

Query: 512 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 571
           K+  Q         ++  +        +           +A+   G + Y          
Sbjct: 262 KDPNQIYGV---LNRLAKYDLKQ-RKLIKAANLDHTYYCVAFDKKGDKLY---------- 307

Query: 572 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG 609
                        G    +  ++ D+++ + +I   GG
Sbjct: 308 -----------LGGTFNDLAVFNPDTLEKVKNIKLPGG 334

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 40.9 bits (94), Expect = 6e-04
 Identities = 17/190 (8%), Positives = 42/190 (22%), Gaps = 20/190 (10%)

Query: 313 VNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNV 372
           V ++  +  G  +           +      T  L   +        P         +  
Sbjct: 147 VYLMRAADDGSLYVAGPDIYKMDVKTG--KYTVALPLRNWNRKGYSAPDVLYFWPHQSPR 204

Query: 373 GDIGLWEVGSRERLVLRNF---------KVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 423
            +  +    +R +   ++             DL       Q             +    D
Sbjct: 205 HEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELY-FTGLRSPKD 263

Query: 424 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 483
            +   +    + +  Y       ++              +AF     +L     G    +
Sbjct: 264 PNQ--IYGVLNRLAKYDLKQRKLIKAAN----LDHTYYCVAFDKKGDKL--YLGGTFNDL 315

Query: 484 KVWDATNGAK 493
            V++     K
Sbjct: 316 AVFNPDTLEK 325

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 38.2 bits (87), Expect = 0.004
 Identities = 22/193 (11%), Positives = 42/193 (21%), Gaps = 20/193 (10%)

Query: 463 IAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFEGHEAPVYSVCPHHKENIQFIFST 521
            A    ++ +  I       + V D  +    +      +    +          ++   
Sbjct: 2   PALKAGHEYM--IVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYV-LN 58

Query: 522 ALDGKIKAW------LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 575
              G I            +          GR   + A S DG   Y              
Sbjct: 59  NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVY---------ATVNP 109

Query: 576 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIK 635
           T +           ++ +          +           +R   DG  L V+  D    
Sbjct: 110 TQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG-SLYVAGPDIYKM 168

Query: 636 ILATSDGIRLLRT 648
            + T      L  
Sbjct: 169 DVKTGKYTVALPL 181

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.0 bits (125), Expect = 9e-08
 Identities = 37/322 (11%), Positives = 82/322 (25%), Gaps = 53/322 (16%)

Query: 351 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD 410
           +    + + P    +                  +   +R     D G   +P        
Sbjct: 18  NFTTHLSYDPTTNAIA-------------YPCGKSAFVR---CLDDGDSKVPPVVQFTGH 61

Query: 411 PGVSVNRVIWSP--DGSLFGVAYSRHIVQIYSYHGGDEVRQHL-----EIDAHVGGVNDI 463
               V  V +SP               V ++ +    E          E     G ++DI
Sbjct: 62  GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121

Query: 464 AFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL 523
           ++    ++LCV+  G D         +G       GH   + +        ++ +     
Sbjct: 122 SWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 181

Query: 524 DGKIKAWLYDNLGSRVDYEAPG--RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK--- 578
              +         S  D        +   + +S D                    +    
Sbjct: 182 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL 241

Query: 579 ----------------------NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRI 616
                                  +F   G D +I+ WD+ + + +     D     + ++
Sbjct: 242 KYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQV 301

Query: 617 RF--NKDGCLLAVSTNDNGIKI 636
                 +G ++++S  D  +  
Sbjct: 302 GVVATGNGRIISLS-LDGTLNF 322

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.8 bits (109), Expect = 7e-06
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 473 CVITCGDDKTIKVWDATNGA--KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 530
              T G D TI+VWD T     +++  +  +     V      N   I S +LDG +  +
Sbjct: 265 KFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN-GRIISLSLDGTLNFY 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.9 bits (104), Expect = 3e-05
 Identities = 22/131 (16%), Positives = 48/131 (36%), Gaps = 10/131 (7%)

Query: 843 TMATFMPPPPA-----ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK--SKLKGH-S 894
           ++   +PP P+      T L++ P  N I       + ++  +    +V    +  GH S
Sbjct: 4   SLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGS 63

Query: 895 KRITGLAFSHALN--VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF 952
             +T + FS       L S     ++ VW     ++  +  + + +     A   + + +
Sbjct: 64  SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISW 123

Query: 953 HQDQIHFLVVH 963
             +     VV 
Sbjct: 124 DFEGRRLCVVG 134

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (96), Expect = 3e-04
 Identities = 46/327 (14%), Positives = 82/327 (25%), Gaps = 40/327 (12%)

Query: 281 PTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPED-- 338
           PT  ++ YP G S  +    R +   D    PV    V FTGH  S   +  FS  +   
Sbjct: 27  PTTNAIAYPCGKSAFV----RCLDDGDSKVPPV----VQFTGHGSSVVTTVKFSPIKGSQ 78

Query: 339 ------LPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE--RLVLRN 390
                     V           +     V+    ++   + DI     G R       R+
Sbjct: 79  YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRD 138

Query: 391 FKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQH 450
                +   S      +           +                V  Y           
Sbjct: 139 NFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD 198

Query: 451 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 510
                    V D+ FS  + +  +    D K       +    +YI +  E     +   
Sbjct: 199 RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFAL 258

Query: 511 HKENIQFIFSTALDGKIKAWLYDN--LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 568
              + Q   +   D  I+ W         +   +        +   A G           
Sbjct: 259 SWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATG----------- 307

Query: 569 LGVVQFDTTKNRFLAAGDDFSIKFWDM 595
                      R ++   D ++ F+++
Sbjct: 308 ---------NGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.7 bits (93), Expect = 7e-04
 Identities = 12/89 (13%), Positives = 26/89 (29%), Gaps = 3/89 (3%)

Query: 836 FNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK 895
                F         P      A    D+   A    D++I++++V   +   K     +
Sbjct: 235 GKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ 294

Query: 896 RITGLAFSHAL---NVLVSSGADSQLCVW 921
           ++              ++S   D  L  +
Sbjct: 295 QLGNQQVGVVATGNGRIISLSLDGTLNFY 323

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 52.9 bits (125), Expect = 1e-07
 Identities = 29/299 (9%), Positives = 74/299 (24%), Gaps = 24/299 (8%)

Query: 342 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSM 401
           T+T+ ++       M   P ++ L +       +  + +   +  +    +         
Sbjct: 28  TLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA------- 80

Query: 402 PLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVN 461
                       S+  +     G    V          +          +++   + G +
Sbjct: 81  ---------LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCH 131

Query: 462 DIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFST 521
               S  N+ L V     D+      + +G            V    P H      +F  
Sbjct: 132 SANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRH-----MVFHP 186

Query: 522 ALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 581
                      ++     + + P      +         +   R  +   +  D  ++ +
Sbjct: 187 NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPD-GRHLY 245

Query: 582 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPR-IRFNKDGCLLAVS-TNDNGIKILA 638
                   I  + +     + S +        PR    +  G  L  +    + I +  
Sbjct: 246 ACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYE 304

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.7 bits (119), Expect = 4e-07
 Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 13/78 (16%)

Query: 443 GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 502
           G DEV + +    H  G+  +  +       +I+   D  I  W +++       + H  
Sbjct: 1   GHDEVLKTIS--GHNKGITALTVNP------LISGSYDGRIMEWSSSSM-----HQDHSN 47

Query: 503 PVYSVCPHHKENIQFIFS 520
            + S+     +    I  
Sbjct: 48  LIVSLDNSKAQEYSSISW 65

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.7 bits (119), Expect = 4e-07
 Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 2/88 (2%)

Query: 836 FNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKLKGHS 894
                  +    +   PA         + +++A G  D++I IY+V+   ++   L  H 
Sbjct: 199 SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHK 258

Query: 895 KRITGLAFSHALNVLVSSGADSQLCVWS 922
             +  L +    + LVSSGAD+ +  W+
Sbjct: 259 DGVNNLLWETP-STLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.7 bits (106), Expect = 1e-05
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 418 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC 477
                +  L         + IYS     ++ + L   AH  GVN++ +  P+    +++ 
Sbjct: 221 NEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN--AHKDGVNNLLWETPST---LVSS 275

Query: 478 GDDKTIKVWD 487
           G D  IK W+
Sbjct: 276 GADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 0.001
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)

Query: 884 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEK 928
           DEV   + GH+K IT L  +     L+S   D ++  WSS    +
Sbjct: 3   DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ 43

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 51.5 bits (122), Expect = 4e-07
 Identities = 52/396 (13%), Positives = 111/396 (28%), Gaps = 41/396 (10%)

Query: 575 DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGI 634
           D      +   D   I   D DS +++  ID  G        R +  G  L V   D  I
Sbjct: 29  DLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT-GYAVHI--SRMSASGRYLLVIGRDARI 85

Query: 635 KILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGL-----ADRAAS 689
            ++         +  E      +R+ E+             A A           +    
Sbjct: 86  DMIDLWAK-EPTKVAEIKIGIEARSVES-SKFKGYEDRYTIAGAYWPPQFAIMDGETLEP 143

Query: 690 MVSIPGMNGDVRSLA---DVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 746
              +      V +     + +      S++  +     + +      + +  +NL  T I
Sbjct: 144 KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI 203

Query: 747 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 806
               F   G       S+  + +     + + +   +       L               
Sbjct: 204 GAAPFLADG----GWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF 259

Query: 807 SNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI 866
            +P+           D  + S  G          +K +A        + F+  HP+ +++
Sbjct: 260 VHPKYGPVWSTSHLGDGSI-SLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHL 318

Query: 867 IAI------GMDDSSIQIYNVRVDEVKSKLKGHS---------KRITGLAFSHA-----L 906
                         S+ +++++  + K ++   +         KR+    ++        
Sbjct: 319 YVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWF 378

Query: 907 NVLVSSGADSQLCVWSSDGWEKQ---KNRFLQIPTG 939
           +V       S L V      + +   K+  L  PTG
Sbjct: 379 SVWNGKNDSSALVVVDDKTLKLKAVVKDPRLITPTG 414

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 44.6 bits (104), Expect = 6e-05
 Identities = 26/276 (9%), Positives = 70/276 (25%), Gaps = 34/276 (12%)

Query: 337 EDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLV-GTNVGDIGLWEVGSRERLVLRNFKVWD 395
            ++ ++    +     P           L  V   + G I L +  S++  +++      
Sbjct: 5   PEMRESWKVLVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKK--IVKVIDT-- 60

Query: 396 LGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG--DEVRQHLEI 453
                           G +V+    S  G    V      + +         +V +    
Sbjct: 61  ----------------GYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG 104

Query: 454 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE 513
                  +         +  +          + D      + I       V +   H + 
Sbjct: 105 IEARSVESSKFKG-YEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEP 163

Query: 514 NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 573
            +  I ++    +    + +  G  +          T+           G          
Sbjct: 164 RVAAIIASHEHPEFIVNVKET-GKVLLVNYKDIDNLTVTSIGAAPFLADGG--------- 213

Query: 574 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG 609
           +D++   F+ A ++ +         + L+++   G 
Sbjct: 214 WDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK 249

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 50.6 bits (119), Expect = 6e-07
 Identities = 33/333 (9%), Positives = 88/333 (26%), Gaps = 14/333 (4%)

Query: 578 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS-TNDNGIKI 636
           ++  LA      +   D + + +   I      P          G +   +      +  
Sbjct: 1   RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60

Query: 637 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGM 696
           +    G  L R   +   +  ++   +  +    + A   +     L         +   
Sbjct: 61  IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY 120

Query: 697 NGDVRSLADVKPRITEE-----SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIF 751
           + +  S         +      + D SK++ L          +  L E+          +
Sbjct: 121 DAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETY 180

Query: 752 TNSGNAILALASNAIHLLWKW---QRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSN 808
                  +     +  ++       R + + +               +G M   +V   +
Sbjct: 181 AQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMD 240

Query: 809 PEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIA 868
                     +K  ++        +  F++    ++    P P +   +     D + + 
Sbjct: 241 VFYFSTAVNPAKTRAFGAY---NVLESFDLEKNASIKRV-PLPHSYYSVNVST-DGSTVW 295

Query: 869 IGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLA 901
           +G     +  Y+    E K ++         LA
Sbjct: 296 LGGALGDLAAYDAETLEKKGQVDLPGNASMSLA 328

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.3 bits (95), Expect = 4e-04
 Identities = 29/291 (9%), Positives = 71/291 (24%), Gaps = 38/291 (13%)

Query: 342 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFK----VWDLG 397
            ++    +  S       P  +TL +  + V            R+ L + +         
Sbjct: 73  DLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE 132

Query: 398 ACSMPLQAALVKDPG---VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEID 454
           A       A  +D          +      +   V            +   +V       
Sbjct: 133 APRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQH 192

Query: 455 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI-FEGHEAPVYSVCPHHKE 513
              G +    ++                +   D   G          +   +S   +  +
Sbjct: 193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK 252

Query: 514 NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 573
              F         ++++  +   + +          ++  S DG+  +            
Sbjct: 253 TRAFGA----YNVLESFDLEK-NASIKRVPLPHSYYSVNVSTDGSTVW------------ 295

Query: 574 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP---ASPRIRFNKD 621
                      G    +  +D ++++    +D  G      AS R+ F +D
Sbjct: 296 ---------LGGALGDLAAYDAETLEKKGQVDLPGNASMSLASVRL-FTRD 336

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.2 bits (92), Expect = 0.001
 Identities = 21/299 (7%), Positives = 69/299 (23%), Gaps = 49/299 (16%)

Query: 392 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR-HIVQIYSYHGGDEVRQH 450
            V D    ++  +   + D G +    + +P G +     ++   +       G+ + + 
Sbjct: 14  VVIDTEKMAV-DKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRI 72

Query: 451 LEIDAHVGGVNDIAFS-HPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 509
                     +    +  P+ +   I     +           +  +++           
Sbjct: 73  DLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE 132

Query: 510 HHKENIQFIFST-----ALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY--- 561
             ++     ++         G+    +    G+ V+ +    W        D    +   
Sbjct: 133 APRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQH 192

Query: 562 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTS------------------ 603
           +     +          +          +   D+++ ++                     
Sbjct: 193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK 252

Query: 604 ------------IDADGG-------LPASPR-IRFNKDGCLLAVSTNDNGIKILATSDG 642
                        D +         LP S   +  + DG  + +      +        
Sbjct: 253 TRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL 311

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.2 bits (87), Expect = 0.004
 Identities = 15/174 (8%), Positives = 47/174 (27%), Gaps = 9/174 (5%)

Query: 323 HSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGS 382
            S  +   +     +    T+       S        P    +     + G +      +
Sbjct: 146 GSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTA 205

Query: 383 RERLVLRNFKVWDLGACSMPLQAALVK---DPGVSVNRVIWSPDGSLFGVAYSRHIVQIY 439
           R+ +   +   +  G  +M L+   +       + V     + + +      + ++++ +
Sbjct: 206 RKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESF 265

Query: 440 SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK 493
                  +++             +  S     +     G    +  +DA    K
Sbjct: 266 DLEKNASIKRVP----LPHSYYSVNVSTDGSTV--WLGGALGDLAAYDAETLEK 313

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 49.1 bits (115), Expect = 2e-06
 Identities = 14/152 (9%), Positives = 37/152 (24%), Gaps = 12/152 (7%)

Query: 341 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACS 400
             +  +    S P  +   P       +   V      E G  +   +            
Sbjct: 208 VVLNFSFEVVSKPFVIPLIPGSPNPTKL---VPRSMTSEAGEYDLNDMYKRSSPINVDPG 264

Query: 401 MPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGV 460
                  ++   +  +  +     + +  A  + ++  Y            ++      +
Sbjct: 265 DYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR-------KVTEVKNNL 317

Query: 461 NDIAFSHPNKQLCVITCGDDKTIKVWDATNGA 492
            D+  S   K +  +   DD  I  +      
Sbjct: 318 TDLRLSADRKTV--MVRKDDGKIYTFPLEKPE 347

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 46.8 bits (109), Expect = 9e-06
 Identities = 23/332 (6%), Positives = 62/332 (18%), Gaps = 42/332 (12%)

Query: 338 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGD-IGLWEVGSRERLVLRNFKVWDL 396
           D+  T    + +      +      +   + GT  GD +G+++  + +            
Sbjct: 30  DVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVF 89

Query: 397 GA----------------------CSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH 434
                                           + +     +     S +       +   
Sbjct: 90  AMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLK 149

Query: 435 IVQIYSYHGGDEVRQHLEIDAHVGG----VNDIAFSHPNKQLCVITCGDDKTIKVWDATN 490
             +   Y         +E            +D A +       +            D   
Sbjct: 150 HGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV 209

Query: 491 GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTT 550
               +      +  + +                          N   +            
Sbjct: 210 LNFSFE---VVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDY 266

Query: 551 MAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL 610
                  +            V         +  A +   +  +D+ + ++    +    L
Sbjct: 267 RMIIPLESSIL------IYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDL 320

Query: 611 PASPRIRFNKDGCLLAVSTNDNGIKILATSDG 642
             S       D   + V  +D  I        
Sbjct: 321 RLSA------DRKTVMVRKDDGKIYTFPLEKP 346

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 43.3 bits (100), Expect = 1e-04
 Identities = 20/178 (11%), Positives = 38/178 (21%), Gaps = 5/178 (2%)

Query: 852  PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVS 911
            P+     F P D ++IA        Q +   V            RI  +       V   
Sbjct: 3    PSKFAEDFSPLDGDLIAFVSRG---QAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFI 59

Query: 912  SGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFE 971
             G      +   D    +  +F +                       F ++         
Sbjct: 60   HGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP 119

Query: 972  TTKLECVKQWV--PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINP 1027
            T      +  +     S      A            ++   + V+     K+      
Sbjct: 120  TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTE 177

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 42.5 bits (98), Expect = 2e-04
 Identities = 31/353 (8%), Positives = 78/353 (22%), Gaps = 20/353 (5%)

Query: 580 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG--IKIL 637
             +A          D+    +L     +       R     D  +  +     G  + I 
Sbjct: 16  DLIAFVSRGQAFIQDVSGTYVLKV--PEPLRIRYVR--RGGDTKVAFIHGTREGDFLGIY 71

Query: 638 ATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMN 697
               G             A     N K  +                 +     V      
Sbjct: 72  DYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDL----ETGKPTVIERSRE 127

Query: 698 GDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA 757
             +                  K                    ++   KI      NS + 
Sbjct: 128 AMITDFTISDNSRFIAYGFPLKHG-----ETDGYVMQAIHVYDMEGRKIFAATTENSHDY 182

Query: 758 ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA 817
             A  +++ +L +   R+   S  +   + + ++   P  I +     +          +
Sbjct: 183 APAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTS 242

Query: 818 LSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQ 877
            +                 +   ++ +          +                +   + 
Sbjct: 243 EAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGE-FAAYYQGAPEKGVLL 301

Query: 878 IYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK 930
            Y+V+      K+      +T L  S     ++    D ++  +  +  E ++
Sbjct: 302 KYDVK----TRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDER 350

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 41.8 bits (96), Expect = 4e-04
 Identities = 28/259 (10%), Positives = 60/259 (23%), Gaps = 24/259 (9%)

Query: 420 WSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG 478
           +SP DG L     SR    I    G   ++           +  +      K   +    
Sbjct: 10  FSPLDGDLIAFV-SRGQAFIQDVSGTYVLKV-----PEPLRIRYVRRGGDTKVAFIHGTR 63

Query: 479 DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR 538
           +   + ++D   G K   FE +   V+++          + +   +              
Sbjct: 64  EGDFLGIYDYRTG-KAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVI 122

Query: 539 VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV 598
                      T++ ++                      K+         +I  +DM+  
Sbjct: 123 ERSREAMITDFTISDNSRFI-------------AYGFPLKHGETDGYVMQAIHVYDMEGR 169

Query: 599 QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASR 658
           +      A           F+ D   L   +  +                          
Sbjct: 170 K---IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLI 226

Query: 659 TSENSKPTISPISAAAAAA 677
               +   + P S  + A 
Sbjct: 227 PGSPNPTKLVPRSMTSEAG 245

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.4 bits (113), Expect = 3e-06
 Identities = 9/96 (9%), Positives = 21/96 (21%), Gaps = 5/96 (5%)

Query: 458 GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQF 517
           G    +  + P         G   ++      +     I+  H             +  +
Sbjct: 18  GTAVVLGNT-PAGDKIQYCNGT--SVYTVPVGSLTDTEIYTEHSHQTTVAKTSP--SGYY 72

Query: 518 IFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAY 553
             S  + G ++ W        +    P         
Sbjct: 73  CASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDI 108

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.0 bits (112), Expect = 4e-06
 Identities = 14/106 (13%), Positives = 26/106 (24%), Gaps = 2/106 (1%)

Query: 854 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG 913
           A  L   P   + I      S +    V           HS + T    S +     S  
Sbjct: 20  AVVLGNTP-AGDKIQYCNGTS-VYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGD 77

Query: 914 ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 959
               + +W +          + + +G       D+  +        
Sbjct: 78  VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEG 123

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.8 bits (109), Expect = 7e-06
 Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 7/61 (11%)

Query: 473 CVITCGDDKTIKVWDATNGAKQYIFEGH---EAPVYSVCPHHKENIQFIFSTALDGKIKA 529
            + +   DKTIK+W+      +         E     +        Q + S + +G I  
Sbjct: 252 KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK----QALVSISANGFINF 307

Query: 530 W 530
            
Sbjct: 308 V 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.1 bits (102), Expect = 6e-05
 Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 1/89 (1%)

Query: 837 NMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK- 895
               F+  +        + F      D   IA    D +I+I+NV   +V+  +   ++ 
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI 282

Query: 896 RITGLAFSHALNVLVSSGADSQLCVWSSD 924
               L        LVS  A+  +   + +
Sbjct: 283 EDQQLGIIWTKQALVSISANGFINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.8 bits (96), Expect = 3e-04
 Identities = 31/275 (11%), Positives = 69/275 (25%), Gaps = 32/275 (11%)

Query: 389 RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR 448
            +     +          +  +          SP G           V+I+       + 
Sbjct: 38  TSVYTVPV---GSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL 94

Query: 449 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 508
           +   I    G V DI++   +K++  +  G ++   V+    G       G    + SV 
Sbjct: 95  KT-TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVD 153

Query: 509 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 568
                  + I  +  +                 E      +             G     
Sbjct: 154 FKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTI 213

Query: 569 LGVVQFDTTK---------------------------NRFLAAGDDFSIKFWDMDSVQLL 601
           +     D TK                            +  +A  D +IK W++ ++++ 
Sbjct: 214 VLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVE 273

Query: 602 TSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 636
            +I     +    ++        L   + +  I  
Sbjct: 274 KTIPVGTRIE-DQQLGIIWTKQALVSISANGFINF 307

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 48.6 bits (115), Expect = 3e-06
 Identities = 29/214 (13%), Positives = 50/214 (23%), Gaps = 16/214 (7%)

Query: 412 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD--EVRQHLEIDAHVGGVNDIAFSHPN 469
           G +V+    S  G    V      V +      +   V +                   +
Sbjct: 61  GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWED 120

Query: 470 KQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 529
           K              + D      + I             H +  +  I ++    +   
Sbjct: 121 KYAIA-GAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIV 179

Query: 530 WLYD-NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL-AAGDD 587
            + +      VDY       TT   +            R L     D +   F+ AA   
Sbjct: 180 NVKETGKILLVDYTDLNNLKTTEISAE-----------RFLHDGGLDGSHRYFITAANAR 228

Query: 588 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD 621
             +   D    +L+   D  G  P   R      
Sbjct: 229 NKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVH 262

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.8 bits (105), Expect = 5e-05
 Identities = 20/176 (11%), Positives = 48/176 (27%), Gaps = 23/176 (13%)

Query: 782 KATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTF 841
           + +  V       P+  M   D+               +N   V     G+I+L +  T+
Sbjct: 8   RESWKVHVAPEDRPTQQMNDWDL---------------ENLFSVTLRDAGQIALIDGSTY 52

Query: 842 KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK-GHSKRITGL 900
           +          A             + +   D  + + ++ + E  +  +         +
Sbjct: 53  EIKTVL-DTGYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSI 110

Query: 901 AFSHALN-----VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ 951
             S          +  +    Q  +   +  E +K +  +  T        + RV 
Sbjct: 111 ETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVA 166

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.8 bits (104), Expect = 4e-05
 Identities = 31/263 (11%), Positives = 57/263 (21%), Gaps = 33/263 (12%)

Query: 411 PGVSVNRVIWSPDGSLFGVAYSRH----------IVQIYSYHGGDEVRQHLEIDAHVGGV 460
            G  +   + + DGS    A +             V+++              DA    V
Sbjct: 45  DGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLV 104

Query: 461 ----NDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQ 516
                  + +   K L          + V D    A + + +  +               
Sbjct: 105 GTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDT---- 160

Query: 517 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWC------TTMAYSADGTRTYQGFRKRSLG 570
             F    DG +    +   G+                    AYS    R         + 
Sbjct: 161 -FFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIH 219

Query: 571 VVQFDTTKNRFLAAGDDFSIKFWD---MDSVQLLTSIDADGGLPASPRIRFNKDGCLLAV 627
            +   +   +FL A +  +                +                        
Sbjct: 220 QIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDR----IYLLVDQRDEWRH 275

Query: 628 STNDNGIKILATSDGIRLLRTFE 650
            T    + +L    G   L  FE
Sbjct: 276 KTASRFVVVLDAKTG-ERLAKFE 297

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.4 bits (103), Expect = 5e-05
 Identities = 21/192 (10%), Positives = 44/192 (22%), Gaps = 12/192 (6%)

Query: 314 NVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVG 373
                           +       ++  T               +      L+   T  G
Sbjct: 158 PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWP-TYTG 216

Query: 374 DIGLWEVGSRERLVLRNFK-----VWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 428
            I   ++ S +   L   +         G      Q          +   +       + 
Sbjct: 217 KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIY--LLVDQRDEWR 274

Query: 429 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA 488
              +   V +     G+ + +          ++ I  S   K L       DKT+ + DA
Sbjct: 275 HKTASRFVVVLDAKTGERLAKF----EMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDA 330

Query: 489 TNGAKQYIFEGH 500
            +G +       
Sbjct: 331 ESGEELRSVNQL 342

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.7 bits (96), Expect = 4e-04
 Identities = 32/241 (13%), Positives = 60/241 (24%), Gaps = 49/241 (20%)

Query: 401 MPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGV 460
           + +       P       +   DGSL  VA+             +     +        +
Sbjct: 145 LDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTE-------GTPEITHTEVFHPEDEFLI 197

Query: 461 NDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--FEGHEAPVYSVCPHHKENIQFI 518
           N  A+S    +L   T      I   D ++G  +++   E       +         Q  
Sbjct: 198 NHPAYSQKAGRLVWPT--YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVA 255

Query: 519 FS----------------TALDGKIKAWLYD-NLGSRVDYEAPGRWCTTMAYSADGTRTY 561
           +                           + D   G R+     G    ++  S D     
Sbjct: 256 YHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLL 315

Query: 562 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD 621
                              +  +  D ++   D +S + L S++  G  P    I     
Sbjct: 316 -------------------YALSTGDKTLYIHDAESGEELRSVNQLGHGPQV--ITTADM 354

Query: 622 G 622
           G
Sbjct: 355 G 355

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.9 bits (94), Expect = 6e-04
 Identities = 30/375 (8%), Positives = 79/375 (21%), Gaps = 54/375 (14%)

Query: 530 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS 589
           ++ D    RV     G +      + DG+                 T  +R         
Sbjct: 31  FVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHA-----------STVFSRIARGERTDY 79

Query: 590 IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 649
           ++ +D  ++     I                D     V T                L   
Sbjct: 80  VEVFDPVTLLPTADI-------------ELPDAPRFLVGTYPWMT----------SLTPD 116

Query: 650 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPR 709
                    +   +   +     A                 +     +       D    
Sbjct: 117 GKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD-----CYHIFPTAPDTFFMHCRDGSLA 171

Query: 710 ITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL 769
                 + +     TE+  P     +  P               S  A   +       +
Sbjct: 172 KVAFGTEGTPEITHTEVFHPEDEFLINHP-------------AYSQKAGRLVWPTYTGKI 218

Query: 770 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS 829
            +   +  ++          +  +              +         + + D +    +
Sbjct: 219 HQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTA 278

Query: 830 GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN-IIAIGMDDSSIQIYNVRVDEVKS 888
              + + +  T + +A F         +     +   + A+   D ++ I++    E   
Sbjct: 279 SRFVVVLDAKTGERLAKF-EMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELR 337

Query: 889 KLKGHSKRITGLAFS 903
            +         +  +
Sbjct: 338 SVNQLGHGPQVITTA 352

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 42.9 bits (99), Expect = 1e-04
 Identities = 29/286 (10%), Positives = 65/286 (22%), Gaps = 47/286 (16%)

Query: 341 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKV------- 393
             VT T+  GS+PM     P    + +   +  D+ + +  +   +              
Sbjct: 22  NKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAV 81

Query: 394 ---------------WDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQI 438
                                +     A     G S   +  SPDG    V  +      
Sbjct: 82  SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVS 141

Query: 439 YSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 498
                   V   + +     G+               +        V +           
Sbjct: 142 VINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-----SVIDTV 196

Query: 499 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT 558
             EA    +  + +    ++ +        + +             G     +A + DG 
Sbjct: 197 KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGK 256

Query: 559 RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI 604
           + Y                    +A     ++   D  +  +  ++
Sbjct: 257 KVY--------------------VALSFCNTVSVIDTATNTITATM 282

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 41.0 bits (94), Expect = 6e-04
 Identities = 10/91 (10%), Positives = 22/91 (24%), Gaps = 4/91 (4%)

Query: 413 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 472
            S   V      +                 G +++   + +         IA + P+ + 
Sbjct: 202 PSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG---PDPAGIAVT-PDGKK 257

Query: 473 CVITCGDDKTIKVWDATNGAKQYIFEGHEAP 503
             +      T+ V D             + P
Sbjct: 258 VYVALSFCNTVSVIDTATNTITATMAVGKNP 288

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.1 bits (95), Expect = 6e-04
 Identities = 7/88 (7%), Positives = 22/88 (25%), Gaps = 4/88 (4%)

Query: 416 NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVI 475
           + ++            +       +   G          ++    + I  +         
Sbjct: 276 DGIMILTVEHSRSCLAAAENTSSVTASVGQTSGP----ISNGHDSDAIIAAQDGASDNYA 331

Query: 476 TCGDDKTIKVWDATNGAKQYIFEGHEAP 503
                + + ++DA +   Q   E  + P
Sbjct: 332 NSAGTEVLDIYDAASDQDQSSVELDKGP 359

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 17/252 (6%), Positives = 54/252 (21%), Gaps = 27/252 (10%)

Query: 411 PGVSVNRVIWSPDGSLFGVA---YSR-------HIVQIYSYHGGDEVRQ----HLEIDAH 456
            G  ++  +    GS F +A   ++R         V+++       +           + 
Sbjct: 63  LGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV 122

Query: 457 VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQ 516
              V+ I     +  L +                 +   + +                  
Sbjct: 123 GPRVHIIGNCASSACL-LFFLFGSSAAAGLSVPGASDDQLTKSASCFHIH----PGAAAT 177

Query: 517 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 576
               +     + A       +                +     + Q  +    G++ +  
Sbjct: 178 HYLGSC-PASLAASDLAAAPAAA-------GIVGAQCTGAQNCSSQAAQANYPGMLVWAV 229

Query: 577 TKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 636
             +                           +        +   K+   + + T ++    
Sbjct: 230 ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSC 289

Query: 637 LATSDGIRLLRT 648
           LA ++    +  
Sbjct: 290 LAAAENTSSVTA 301

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 39.1 bits (91), Expect = 0.003
 Identities = 21/142 (14%), Positives = 37/142 (26%), Gaps = 13/142 (9%)

Query: 800 MTNDVTDSNPEEAVP-CFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLA 858
              +  D      V    A  K  ++          +      +      P P     L 
Sbjct: 206 TMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYI-PVPKNPHGLN 264

Query: 859 FHPQDNNIIAIGMDDSSIQIYNV-RVDEVKSKLKGHSKRITG----------LAFSHALN 907
             P     IA G    ++ +  + ++D++          I              F    N
Sbjct: 265 TSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGN 324

Query: 908 VLVSSGADSQLCVWSSDGWEKQ 929
              +   DSQ+C W+     K 
Sbjct: 325 AYTTLFIDSQVCKWNIADAIKH 346

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	1106
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.96
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.95
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.95
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.93
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.88
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.87
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.87
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.87
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.86
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.85
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.84
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.79
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.77
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.76
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.75
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.72
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.58
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.53
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.5
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.49
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.48
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.44
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.21
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.13
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.05
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.97
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.97
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.95
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.92
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.87
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.86
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.86
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.84
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.83
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.76
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.76
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.73
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.64
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.35
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.28
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.23
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.17
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.99
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.64
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.58
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.58
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.56
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.45
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.43
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.43
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.42
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.42
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.41
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.38
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.38
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.37
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.35
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.33
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.27
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.23
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.1
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.03
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.98
d1uuja_	76	Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te	96.73
d2nxpa1	149	TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId	96.53
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.42
d2j4ba1	131	TAF5 subunit of TFIID {Encephalitozoon cuniculi [T	95.67
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.28
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.89
d2j49a1	134	TAF5 subunit of TFIID {Saccharomyces cerevisiae [T	94.71
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	94.01
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	92.95
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	92.93
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	92.59
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	91.41
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	90.39
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	85.46
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	84.23
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	82.61

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-35  Score=328.15  Aligned_cols=295  Identities=13%  Similarity=0.157  Sum_probs=241.2

Q ss_pred             CcceeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEE
Q 001295          340 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI  419 (1106)
Q Consensus       340 ~~~~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~  419 (1106)
                      ..+...++.|...|+|++|||+|++ ||+|+ ||.|+|||+.++.....              .......+|.+.|.+++
T Consensus        41 ~~~~~~~~~H~~~V~~v~fs~~g~~-latg~-dg~V~iWd~~~~~~~~~--------------~~~~~~~~h~~~I~~v~  104 (337)
T d1gxra_          41 HARQINTLNHGEVVCAVTISNPTRH-VYTGG-KGCVKVWDISHPGNKSP--------------VSQLDCLNRDNYIRSCK  104 (337)
T ss_dssp             EEEEEEEECCSSCCCEEEECSSSSE-EEEEC-BSEEEEEETTSTTCCSC--------------SEEEECSCTTSBEEEEE
T ss_pred             CceEEEECCCCCcEEEEEECCCCCE-EEEEE-CCEEEEEEccCCcccce--------------eEEeeecCCCCcEEEEE
Confidence            3356677789999999999999995 88987 89999999987654321              11113568999999999


Q ss_pred             EccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEec
Q 001295          420 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG  499 (1106)
Q Consensus       420 ~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  499 (1106)
                      |+|||++|++|+.||+|++||+...... ....+.+|...|.+++|+|++.  ++++++.|+.|++||+.++++.....+
T Consensus       105 ~s~dg~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~~~~~~~~~~~~~~~~  181 (337)
T d1gxra_         105 LLPDGCTLIVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISPDSK--VCFSCCSDGNIAVWDLHNQTLVRQFQG  181 (337)
T ss_dssp             ECTTSSEEEEEESSSEEEEEECCCC--E-EEEEEECSSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             EcCCCCEEEEeecccccccccccccccc-cccccccccccccccccccccc--ccccccccccccccccccccccccccc
Confidence            9999999999999999999999865432 2335778999999999999999  899999999999999999999999999


Q ss_pred             cCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCC
Q 001295          500 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN  579 (1106)
Q Consensus       500 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~  579 (1106)
                      |...|.+++|++  ++..+++++.|+.+++||+++.+.+..+. +...|                     .+++|+|+++
T Consensus       182 ~~~~v~~l~~s~--~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i---------------------~~l~~~~~~~  237 (337)
T d1gxra_         182 HTDGASCIDISN--DGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQI---------------------FSLGYCPTGE  237 (337)
T ss_dssp             CSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCE---------------------EEEEECTTSS
T ss_pred             cccccccccccc--cccccccccccccccccccccceeecccc-cccce---------------------EEEEEccccc
Confidence            999999999865  44789999999999999998765544332 33334                     4455555556


Q ss_pred             EEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccC
Q 001295          580 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT  659 (1106)
Q Consensus       580 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  659 (1106)
                      ++++++.|+.|++||+.+++.....   .+...|.+++|+|++++|++++.||.|++||..++. .+..           
T Consensus       238 ~l~~~~~d~~i~i~d~~~~~~~~~~---~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~-~~~~-----------  302 (337)
T d1gxra_         238 WLAVGMESSNVEVLHVNKPDKYQLH---LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA-SIFQ-----------  302 (337)
T ss_dssp             EEEEEETTSCEEEEETTSSCEEEEC---CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-EEEE-----------
T ss_pred             ccceecccccccccccccccccccc---ccccccceEEECCCCCEEEEEeCCCeEEEEECCCCC-EEEE-----------
Confidence            8999999999999999988765433   334579999999999999999999999999987762 1110           


Q ss_pred             CCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCc
Q 001295          660 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE  739 (1106)
Q Consensus       660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~  739 (1106)
                                                                                                      
T Consensus       303 --------------------------------------------------------------------------------  302 (337)
T d1gxra_         303 --------------------------------------------------------------------------------  302 (337)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccceEEEEEcCCCceEEEeecCceEEEeec
Q 001295          740 NLRATKISRLIFTNSGNAILALASNAIHLLWKW  772 (1106)
Q Consensus       740 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~  772 (1106)
                      ..|...|.+++|+|++++|++++.||.|+|||+
T Consensus       303 ~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         303 SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             ccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            115678999999999999999999999999986

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.7e-36  Score=328.80  Aligned_cols=305  Identities=18%  Similarity=0.320  Sum_probs=257.5

Q ss_pred             eeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEe
Q 001295          452 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL  531 (1106)
Q Consensus       452 ~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd  531 (1106)
                      +|.||.+.|++|+|+|+++  +|+||+.||+|+|||+.+++.+.++.+|...|.+++|++  ++.++++++.++.+.+|+
T Consensus        12 ~L~GH~~~I~~l~~sp~~~--~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~--~~~~~~~~~~~~~~~~~~   87 (317)
T d1vyhc1          12 ALSGHRSPVTRVIFHPVFS--VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH--SGKLLASCSADMTIKLWD   87 (317)
T ss_dssp             EEECCSSCEEEEEECSSSS--EEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECT--TSSEEEEEETTSCCCEEE
T ss_pred             EEcCCCCCeEEEEEcCCCC--EEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeec--cccccccccccccccccc
Confidence            6899999999999999999  899999999999999999999999999999999999865  457999999999999999


Q ss_pred             CCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCC
Q 001295          532 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP  611 (1106)
Q Consensus       532 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  611 (1106)
                      .........+..+...+.++.+++++                     +.+++++.|+.+++||+.+++.+..+..+.  .
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~  144 (317)
T d1vyhc1          88 FQGFECIRTMHGHDHNVSSVSIMPNG---------------------DHIVSASRDKTIKMWEVQTGYCVKTFTGHR--E  144 (317)
T ss_dssp             TTSSCEEECCCCCSSCEEEEEECSSS---------------------SEEEEEETTSEEEEEETTTCCEEEEEECCS--S
T ss_pred             ccccccccccccccccceeeeccCCC---------------------ceEEeeccCcceeEeecccceeeeEEccCC--C
Confidence            98877766666666666666655555                     479999999999999999999999988664  4


Q ss_pred             CcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhccccccccccccc
Q 001295          612 ASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMV  691 (1106)
Q Consensus       612 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  691 (1106)
                      .+.+++|++++.+|++++.|+.|++|+..++ .....+                                          
T Consensus       145 ~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~-~~~~~~------------------------------------------  181 (317)
T d1vyhc1         145 WVRMVRPNQDGTLIASCSNDQTVRVWVVATK-ECKAEL------------------------------------------  181 (317)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEEEE------------------------------------------
T ss_pred             cceeeecccCCCEEEEEeCCCeEEEEeeccc-eeeEEE------------------------------------------
Confidence            7899999999999999999999999998766 221111                                          


Q ss_pred             ccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEee
Q 001295          692 SIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWK  771 (1106)
Q Consensus       692 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~  771 (1106)
                                                                      ..+...+..+.++|++.........       
T Consensus       182 ------------------------------------------------~~~~~~i~~~~~~~~~~~~~~~~~~-------  206 (317)
T d1vyhc1         182 ------------------------------------------------REHRHVVECISWAPESSYSSISEAT-------  206 (317)
T ss_dssp             ------------------------------------------------CCCSSCEEEEEECCSCGGGGGGGCC-------
T ss_pred             ------------------------------------------------ecCCCCceEEEEeeccccceeeccc-------
Confidence                                                            1255677888888877533222111       


Q ss_pred             ccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCC
Q 001295          772 WQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP  850 (1106)
Q Consensus       772 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~  850 (1106)
                                                              .........++.++++++ |+.|++||+.+++.+.++.+|
T Consensus       207 ----------------------------------------~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~  246 (317)
T d1vyhc1         207 ----------------------------------------GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH  246 (317)
T ss_dssp             ----------------------------------------SCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             ----------------------------------------cceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCC
Confidence                                                    112233445677888888 899999999999999999999


Q ss_pred             CCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEe
Q 001295          851 PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS  922 (1106)
Q Consensus       851 ~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd  922 (1106)
                      ...|++++|+| ++++|++|+.||.|+|||+.+++++..+.+|.+.|++++|+|++++|++|+.||+|+|||
T Consensus       247 ~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         247 DNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             SSCEEEEEECS-SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CCCEEEEEECC-CCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            99999999999 899999999999999999999999999999999999999999999999999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4e-35  Score=331.49  Aligned_cols=328  Identities=17%  Similarity=0.235  Sum_probs=246.0

Q ss_pred             EEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCcee
Q 001295          368 VGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEV  447 (1106)
Q Consensus       368 tg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~  447 (1106)
                      .+..++.+.+|+....+.....-.               ...+|.+.|+||+|||||++||+|+ |++|+|||+.+++.+
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~l~---------------~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~   96 (388)
T d1erja_          33 KKQTNDYYILYNPALPREIDVELH---------------KSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLV   96 (388)
T ss_dssp             EEECSSCEEEECTTSCCCEEEEEE---------------EEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEE
T ss_pred             ccCCCCcEEEeCCCCCcceeeeeE---------------eeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceE
Confidence            456678888999776554332100               1236999999999999999999986 899999999988765


Q ss_pred             eeee---------------eeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEecccc
Q 001295          448 RQHL---------------EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHK  512 (1106)
Q Consensus       448 ~~~~---------------~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~  512 (1106)
                      ..+.               ...+|...|.+++|+|+++  +|++|+.||.|++||..+++.+..+.+|...|.++++++.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~--~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~  174 (388)
T d1erja_          97 ARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK--FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS  174 (388)
T ss_dssp             EEECC-----------------CCCCBEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred             eeecccccccccccccccccccCCCCCEEEEEECCCCC--cceecccccccccccccccccccccccccccccccccccc
Confidence            4321               1235777899999999999  8999999999999999999999999999999999998654


Q ss_pred             CCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEE
Q 001295          513 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF  592 (1106)
Q Consensus       513 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i  592 (1106)
                        +..+++++.++.+++||..+.........+...+.                     ...+.+++++|++++.|+.|++
T Consensus       175 --~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~l~~~~~d~~i~i  231 (388)
T d1erja_         175 --GDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTT---------------------VAVSPGDGKYIAAGSLDRAVRV  231 (388)
T ss_dssp             --SSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEE---------------------EEECSTTCCEEEEEETTSCEEE
T ss_pred             --cccccccccceeeeeeecccccccccccccccccc---------------------ccccCCCCCeEEEEcCCCeEEE
Confidence              47899999999999999987655544443333222                     2223345568999999999999


Q ss_pred             EECCCcceeEEEccC-----CCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCc
Q 001295          593 WDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTI  667 (1106)
Q Consensus       593 wd~~~~~~~~~~~~~-----~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  667 (1106)
                      |+..++..+..+...     .+...|.+++|+|++++|++++.||.|++||+.++... ...                  
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~------------------  292 (388)
T d1erja_         232 WDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK-SDS------------------  292 (388)
T ss_dssp             EETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----------------------------
T ss_pred             eecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccc-ccc------------------
Confidence            999998877665421     22345666666666666666666666666665443100 000                  


Q ss_pred             CchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceE
Q 001295          668 SPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKIS  747 (1106)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~  747 (1106)
                                                                                                      
T Consensus       293 --------------------------------------------------------------------------------  292 (388)
T d1erja_         293 --------------------------------------------------------------------------------  292 (388)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEE
Q 001295          748 RLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMS  827 (1106)
Q Consensus       748 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~  827 (1106)
                                                                                           .          
T Consensus       293 ---------------------------------------------------------------------~----------  293 (388)
T d1erja_         293 ---------------------------------------------------------------------K----------  293 (388)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ---------------------------------------------------------------------c----------
Confidence                                                                                 0          


Q ss_pred             EeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEE-----
Q 001295          828 ASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAF-----  902 (1106)
Q Consensus       828 ~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~-----  902 (1106)
                               ....+........|...|++++|+| ++++|++|+.||.|++||+.+++++.++.+|.+.|+++++     
T Consensus       294 ---------~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~  363 (388)
T d1erja_         294 ---------TPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSS  363 (388)
T ss_dssp             --------------CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCT
T ss_pred             ---------cccccceeeecccccceEEEEEECC-CCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcc
Confidence                     0000112233345677899999999 8999999999999999999999999999999999999985     


Q ss_pred             -ecCCCEEEEEcCCCcEEEEeCC
Q 001295          903 -SHALNVLVSSGADSQLCVWSSD  924 (1106)
Q Consensus       903 -s~d~~~l~s~s~Dg~i~vwd~~  924 (1106)
                       +||+.+||||+.||+|+||+++
T Consensus       364 ~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         364 LGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             TCTTCEEEEEEETTSEEEEEEEE
T ss_pred             cCCCCCEEEEEeCCCEEEEEeee
Confidence             5789999999999999999985

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.1e-35  Score=320.38  Aligned_cols=305  Identities=16%  Similarity=0.316  Sum_probs=262.5

Q ss_pred             eccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCC
Q 001295          346 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  425 (1106)
Q Consensus       346 ~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~  425 (1106)
                      +-+|++.|++++|+|+++ +||||+.||+|+|||+.+++.+..                   +.+|...|.+++|+|++.
T Consensus        13 L~GH~~~I~~l~~sp~~~-~l~s~s~Dg~i~iWd~~~~~~~~~-------------------~~~h~~~V~~~~~~~~~~   72 (317)
T d1vyhc1          13 LSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKGHTDSVQDISFDHSGK   72 (317)
T ss_dssp             EECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEE-------------------ECCCSSCEEEEEECTTSS
T ss_pred             EcCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------EeCCCCcEEEEeeecccc
Confidence            446999999999999999 599999999999999999987763                   689999999999999999


Q ss_pred             EEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeE
Q 001295          426 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY  505 (1106)
Q Consensus       426 ~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~  505 (1106)
                      ++++++.++.+.+|+....+...   .+.+|...+.++.|++++.  .+++++.|+.+++||+++++.+..+.+|...+.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  147 (317)
T d1vyhc1          73 LLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR  147 (317)
T ss_dssp             EEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred             ccccccccccccccccccccccc---ccccccccceeeeccCCCc--eEEeeccCcceeEeecccceeeeEEccCCCcce
Confidence            99999999999999998876544   5778999999999999999  799999999999999999999999999999999


Q ss_pred             EEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEE
Q 001295          506 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG  585 (1106)
Q Consensus       506 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  585 (1106)
                      +++|++  ++.+|++++.|+.|++|++.+......+..+...+..+.+++++......... ..........+.++++++
T Consensus       148 ~~~~~~--~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  224 (317)
T d1vyhc1         148 MVRPNQ--DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT-GSETKKSGKPGPFLLSGS  224 (317)
T ss_dssp             EEEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCC-SCC-------CCEEEEEE
T ss_pred             eeeccc--CCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccc-cceeeeeccCCceeEecc
Confidence            999865  45799999999999999999999998999999999999999988643322222 223344556678899999


Q ss_pred             CCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCC
Q 001295          586 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKP  665 (1106)
Q Consensus       586 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  665 (1106)
                      .|+.|++||+.+++++..+..|.  ..|.+++|+|++++|++|+.||.|++||+.++ +.+..+                
T Consensus       225 ~d~~i~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~----------------  285 (317)
T d1vyhc1         225 RDKTIKMWDVSTGMCLMTLVGHD--NWVRGVLFHSGGKFILSCADDKTLRVWDYKNK-RCMKTL----------------  285 (317)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCS--SCEEEEEECSSSSCEEEEETTTEEEEECCTTS-CCCEEE----------------
T ss_pred             CCCEEEEEECCCCcEEEEEeCCC--CCEEEEEECCCCCEEEEEECCCeEEEEECCCC-cEEEEE----------------
Confidence            99999999999999999998764  47999999999999999999999999998776 222222                


Q ss_pred             CcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccc
Q 001295          666 TISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK  745 (1106)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~  745 (1106)
                                                                                                .+|...
T Consensus       286 --------------------------------------------------------------------------~~h~~~  291 (317)
T d1vyhc1         286 --------------------------------------------------------------------------NAHEHF  291 (317)
T ss_dssp             --------------------------------------------------------------------------ECCSSC
T ss_pred             --------------------------------------------------------------------------cCCCCC
Confidence                                                                                      126778


Q ss_pred             eEEEEEcCCCceEEEeecCceEEEee
Q 001295          746 ISRLIFTNSGNAILALASNAIHLLWK  771 (1106)
Q Consensus       746 i~~~~~s~~~~~l~~~~~dg~i~iw~  771 (1106)
                      |++++|+|++++|++++.||.|++||
T Consensus       292 V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         292 VTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            99999999999999999999999996

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.4e-35  Score=320.87  Aligned_cols=282  Identities=12%  Similarity=0.172  Sum_probs=240.0

Q ss_pred             cccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecC
Q 001295          742 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  821 (1106)
Q Consensus       742 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~  821 (1106)
                      |...|.+++|+|+|++|++++ ||.|+|||+......                  ........  .+|...|.+++|+|+
T Consensus        50 H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~------------------~~~~~~~~--~~h~~~I~~v~~s~d  108 (337)
T d1gxra_          50 HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK------------------SPVSQLDC--LNRDNYIRSCKLLPD  108 (337)
T ss_dssp             CSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC------------------SCSEEEEC--SCTTSBEEEEEECTT
T ss_pred             CCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCccc------------------ceeEEeee--cCCCCcEEEEEEcCC
Confidence            889999999999999999876 899999998642211                  00111111  238899999999999


Q ss_pred             CCEEEEEe-CCeEEEEEcCC--CceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCee
Q 001295          822 DSYVMSAS-GGKISLFNMMT--FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT  898 (1106)
Q Consensus       822 ~~~l~~~s-dg~i~vwd~~~--~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~  898 (1106)
                      +++|++++ ||.|++||+..  .+....+..|...+.+++|+| ++.++++++.|+.|++|++.++++.....+|...|+
T Consensus       109 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~  187 (337)
T d1gxra_         109 GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS  187 (337)
T ss_dssp             SSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             CCEEEEeeccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccc
Confidence            99999998 89999999874  445667888999999999999 899999999999999999999999999999999999


Q ss_pred             EEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEecCCceE
Q 001295          899 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLEC  977 (1106)
Q Consensus       899 ~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d~~~~~~  977 (1106)
                      +++|++++..+++++.|+.|++||+.+++...     ... +   ...|.+++|+|++++|++ +.|+.+++||+.+++.
T Consensus       188 ~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~-----~~~-~---~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~  258 (337)
T d1gxra_         188 CIDISNDGTKLWTGGLDNTVRSWDLREGRQLQ-----QHD-F---TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK  258 (337)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTTEEEE-----EEE-C---SSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE
T ss_pred             cccccccccccccccccccccccccccceeec-----ccc-c---ccceEEEEEcccccccceecccccccccccccccc
Confidence            99999999999999999999999999865422     211 1   147899999999999998 5889999999999887


Q ss_pred             eeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEE
Q 001295          978 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1057 (1106)
Q Consensus       978 ~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t 1057 (1106)
                      ...   ..|...|++++|+|++++|++++.||+|++||+.+++.+..+.        | ...|.  +++|+| |+++|++
T Consensus       259 ~~~---~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~--------~-~~~v~--~~~~s~-d~~~l~t  323 (337)
T d1gxra_         259 YQL---HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK--------E-SSSVL--SCDISV-DDKYIVT  323 (337)
T ss_dssp             EEE---CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--------C-SSCEE--EEEECT-TSCEEEE
T ss_pred             ccc---cccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc--------C-CCCEE--EEEEeC-CCCEEEE
Confidence            654   3789999999999999999999999999999999999887654        2 22355  899999 6899999


Q ss_pred             EeCCCcEEEEee
Q 001295         1058 GLSDGGVHVFEP 1069 (1106)
Q Consensus      1058 ~~~Dg~v~vW~~ 1069 (1106)
                      |+.||+|+|||+
T Consensus       324 ~s~D~~I~vWdl  335 (337)
T d1gxra_         324 GSGDKKATVYEV  335 (337)
T ss_dssp             EETTSCEEEEEE
T ss_pred             EeCCCeEEEEEE
Confidence            999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.1e-34  Score=312.79  Aligned_cols=254  Identities=16%  Similarity=0.193  Sum_probs=213.4

Q ss_pred             CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEE
Q 001295          349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  428 (1106)
Q Consensus       349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  428 (1106)
                      +.+.+.+++++|+|+. ||.++ ++.|.+||+.+++...                   ++.+|...|++++|+|||++||
T Consensus        16 ~r~~~~~~a~~~~g~~-l~~~~-~~~v~i~~~~~~~~~~-------------------~~~~H~~~v~~~~~sp~g~~la   74 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDK-IQYCN-GTSVYTVPVGSLTDTE-------------------IYTEHSHQTTVAKTSPSGYYCA   74 (311)
T ss_dssp             CTTCCCCCEECTTSSE-EEEEE-TTEEEEEETTCSSCCE-------------------EECCCSSCEEEEEECTTSSEEE
T ss_pred             CCCCeEEEEEcCCCCE-EEEEe-CCEEEEEECCCCceeE-------------------EEcCCCCCEEEEEEeCCCCeEe
Confidence            5567788999999996 66654 5789999999887665                   3689999999999999999999


Q ss_pred             EEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecC--CCcEEEEeCCCCceeEEEeccCCCeEE
Q 001295          429 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD--DKTIKVWDATNGAKQYIFEGHEAPVYS  506 (1106)
Q Consensus       429 s~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~h~~~v~~  506 (1106)
                      +|+.||+|+|||+.+++.... ..+.+|.++|.+++|+|+++  ++++++.  ++.++||++++++....+.+|...|.+
T Consensus        75 tg~~dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~d~~--~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~  151 (311)
T d1nr0a1          75 SGDVHGNVRIWDTTQTTHILK-TTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNS  151 (311)
T ss_dssp             EEETTSEEEEEESSSTTCCEE-EEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEE
T ss_pred             ccccCceEeeeeeeccccccc-cccccccCcccccccccccc--cccccccccccccccccccccccccccccccccccc
Confidence            999999999999998775432 35788999999999999999  6777764  567999999999999999999999999


Q ss_pred             EeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEEC
Q 001295          507 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD  586 (1106)
Q Consensus       507 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  586 (1106)
                      ++|+++.+ ..|++|+.||.|++||+++.+....+..+...|.++.++|+++                     ++++++.
T Consensus       152 v~~~~~~~-~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~---------------------~l~~~~~  209 (311)
T d1nr0a1         152 VDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGS---------------------LFASTGG  209 (311)
T ss_dssp             EEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSS---------------------EEEEEET
T ss_pred             ccccccce-eeecccccccccccccccccccccccccccccccccccCcccc---------------------ccccccc
Confidence            99976543 3688999999999999998777777777776666666666554                     7999999


Q ss_pred             CCeEEEEECCCcceeEEEccC-----CCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhh
Q 001295          587 DFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF  649 (1106)
Q Consensus       587 d~~i~iwd~~~~~~~~~~~~~-----~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  649 (1106)
                      |+.|++||..+++.+..+...     +|...|.+++|+|++++|++|+.||.|+|||+.++ ++++.+
T Consensus       210 d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~-~~~~~l  276 (311)
T d1nr0a1         210 DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL-KVEKTI  276 (311)
T ss_dssp             TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-EEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCC-cEEEEE
Confidence            999999999999888777532     24557999999999999999999999999999887 444433

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.7e-34  Score=315.94  Aligned_cols=342  Identities=15%  Similarity=0.238  Sum_probs=255.5

Q ss_pred             ccCCCCcCe-EEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEE
Q 001295          407 LVKDPGVSV-NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV  485 (1106)
Q Consensus       407 ~~~~h~~~V-~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~i  485 (1106)
                      +|.||...| +|++  +||++||+|+.||+|+|||+.+++.+.   ++.+|.+.|.+++|+|++   +|++|+.|++|++
T Consensus         7 tL~GH~~~vitc~~--~~~~~l~tgs~Dg~i~vWd~~~~~~~~---~l~~H~~~V~~l~~s~~~---~l~s~s~D~~i~i   78 (355)
T d1nexb2           7 TLRGHMTSVITCLQ--FEDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVRV   78 (355)
T ss_dssp             EEECCSSSCEEEEE--EETTEEEEEETTTEEEEEETTTTEEEE---EEECCSSCEEEEEEETTT---EEEEEETTCCEEE
T ss_pred             EECCcCCCcEEEEE--ECCCEEEEEeCCCeEEEEECCCCcEEE---EEECCCCCEEEEEEcCCC---EEEEEeccccccc
Confidence            588999886 5554  578999999999999999999988665   688999999999999864   6999999999999


Q ss_pred             EeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCC-CeEEEee
Q 001295          486 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG-TRTYQGF  564 (1106)
Q Consensus       486 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~~~~~~  564 (1106)
                      |++...+.......+............+++.++++++.|+.|++||+.+.............. .....+.. .......
T Consensus        79 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  157 (355)
T d1nexb2          79 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP-LVFHTPEENPYFVGVL  157 (355)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCC-EEESCTTTCTTEEEEE
T ss_pred             ccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceec-cceeccccccceeeee
Confidence            999999988877766666555555456777899999999999999998765544332221111 11111211 1222222


Q ss_pred             eccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCch
Q 001295          565 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR  644 (1106)
Q Consensus       565 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~  644 (1106)
                      .........+.++++.++++..|+.|++||+.+++.+.....+.  ..+.++.|++++.++++++.|+.|++||..++ .
T Consensus       158 ~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~-~  234 (355)
T d1nexb2         158 RGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT--DRIYSTIYDHERKRCISASMDTTIRIWDLENG-E  234 (355)
T ss_dssp             ECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEEETTTTEEEEEETTSCEEEEETTTC-C
T ss_pred             eeccccccccccccceeeeecccceeeeeecccccceeeeeccc--cccccccccccceeeecccccceEEeeecccc-c
Confidence            22334455667788899999999999999999999888887553  46889999999999999999999999998776 2


Q ss_pred             hhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecC
Q 001295          645 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT  724 (1106)
Q Consensus       645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~  724 (1106)
                      .+..+.                                                                          
T Consensus       235 ~~~~~~--------------------------------------------------------------------------  240 (355)
T d1nexb2         235 LMYTLQ--------------------------------------------------------------------------  240 (355)
T ss_dssp             EEEEEC--------------------------------------------------------------------------
T ss_pred             cccccc--------------------------------------------------------------------------
Confidence            222221                                                                          


Q ss_pred             CCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCcccccc
Q 001295          725 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV  804 (1106)
Q Consensus       725 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  804 (1106)
                                      +|...|.++++++  +++++++.||.|++||+.....                      ..   
T Consensus       241 ----------------~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~----------------------~~---  277 (355)
T d1nexb2         241 ----------------GHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSR----------------------KF---  277 (355)
T ss_dssp             ----------------CCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCE----------------------EE---
T ss_pred             ----------------ccccccccccccc--ceeeeeecccccccccccccce----------------------ec---
Confidence                            2566777888764  6799999999999998763211                      00   


Q ss_pred             CCCCCCCCeeE-EEEecCCCEEEEEeCCeEEEEEcCCCceee-eecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEe
Q 001295          805 TDSNPEEAVPC-FALSKNDSYVMSASGGKISLFNMMTFKTMA-TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV  881 (1106)
Q Consensus       805 ~~~~~~~~v~~-l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~-~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~  881 (1106)
                      .  .|...+.+ .+++++++++++|+||+|++||+++++++. .+.+|...|.+++|+| + .++++++.||+++||.+
T Consensus       278 ~--~~~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~-~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         278 S--YHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKG-K-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             E--EECTTCCCCCEEEECSSEEEEEETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEET-T-EEEEEEESSSCEEEEEE
T ss_pred             c--cccCCceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcC-C-eEEEEEECCCcEEEEEE
Confidence            0  03334444 456788999988889999999999999885 4678999999999998 5 58888999999877654

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.8e-34  Score=310.71  Aligned_cols=284  Identities=12%  Similarity=0.116  Sum_probs=232.6

Q ss_pred             cccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecC
Q 001295          742 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  821 (1106)
Q Consensus       742 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~  821 (1106)
                      +.+....++++|+|+.|+.+. ++.+.+|++..                      +..... +.  +|...|++++|+|+
T Consensus        16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~----------------------~~~~~~-~~--~H~~~v~~~~~sp~   69 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGS----------------------LTDTEI-YT--EHSHQTTVAKTSPS   69 (311)
T ss_dssp             CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTC----------------------SSCCEE-EC--CCSSCEEEEEECTT
T ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCC----------------------CceeEE-Ec--CCCCCEEEEEEeCC
Confidence            445667789999999888764 56788888752                      222221 22  38999999999999


Q ss_pred             CCEEEEEe-CCeEEEEEcCCCcee--eeecCCCCCeeEEEEecCCCceEEEeeC--CCcEEEEEeecceEEEEecCcccC
Q 001295          822 DSYVMSAS-GGKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMD--DSSIQIYNVRVDEVKSKLKGHSKR  896 (1106)
Q Consensus       822 ~~~l~~~s-dg~i~vwd~~~~~~~--~~~~~~~~~v~~l~~s~~d~~~la~g~~--dg~v~iwd~~~~~~~~~l~~h~~~  896 (1106)
                      |++|++|+ ||+|++||+.++...  ..+..|...|.+++|+| ++++|++++.  +..++||++.+++....+.+|.+.
T Consensus        70 g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~  148 (311)
T d1nr0a1          70 GYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDS-ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARA  148 (311)
T ss_dssp             SSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECT-TSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSC
T ss_pred             CCeEeccccCceEeeeeeeccccccccccccccCccccccccc-cccccccccccccccccccccccccccccccccccc
Confidence            99999999 999999999987654  55788999999999999 8889988875  456999999999999999999999


Q ss_pred             eeEEEEecCCCE-EEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEecCC
Q 001295          897 ITGLAFSHALNV-LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTK  974 (1106)
Q Consensus       897 V~~l~~s~d~~~-l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d~~~  974 (1106)
                      |++++|+|++++ |++|+.|+.|++||+++++.     .....+|.   ..|.+++|+|+++++++ +.|+.|++||..+
T Consensus       149 v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~-----~~~~~~~~---~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~  220 (311)
T d1nr0a1         149 MNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF-----KSTFGEHT---KFVHSVRYNPDGSLFASTGGDGTIVLYNGVD  220 (311)
T ss_dssp             EEEEEECSSSSCEEEEEETTSCEEEEETTTBEE-----EEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             cccccccccceeeeccccccccccccccccccc-----cccccccc---ccccccccCcccccccccccccccccccccc
Confidence            999999999885 88999999999999998543     34444444   47899999999999998 5799999999999


Q ss_pred             ceEeeeccc-----CCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeC
Q 001295          975 LECVKQWVP-----RESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHP 1049 (1106)
Q Consensus       975 ~~~~~~~~~-----~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 1049 (1106)
                      +..+..+..     .+|...|++++|+|++++|++|+.||+|+|||+.+++++..+..+.       ......+.+.|+ 
T Consensus       221 ~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~-------~~~~~~~~~~~~-  292 (311)
T d1nr0a1         221 GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGT-------RIEDQQLGIIWT-  292 (311)
T ss_dssp             CCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS-------SGGGCEEEEEEC-
T ss_pred             ccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCC-------CccceEEEEEec-
Confidence            887776543     3688999999999999999999999999999999999998876221       111232345554 


Q ss_pred             CCCCEEEEEeCCCcEEEEeec
Q 001295         1050 QEPNEFALGLSDGGVHVFEPL 1070 (1106)
Q Consensus      1050 ~d~~~l~t~~~Dg~v~vW~~~ 1070 (1106)
                        ++.|++++.||.|++||++
T Consensus       293 --~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         293 --KQALVSISANGFINFVNPE  311 (311)
T ss_dssp             --SSCEEEEETTCCEEEEETT
T ss_pred             --CCEEEEEECCCEEEEEeCC
Confidence              5689999999999999974

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-33  Score=317.52  Aligned_cols=286  Identities=13%  Similarity=0.213  Sum_probs=208.0

Q ss_pred             cceeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEE
Q 001295          341 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW  420 (1106)
Q Consensus       341 ~~~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~  420 (1106)
                      ..+...++|++.|+||+|||||++ ||+|+ |++|+|||+.+++.+.......... ............+|...|.+++|
T Consensus        53 ~~l~~~~~H~~~V~~l~fs~dg~~-lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~V~~l~~  129 (388)
T d1erja_          53 VELHKSLDHTSVVCCVKFSNDGEY-LATGC-NKTTQVYRVSDGSLVARLSDDSAAN-KDPENLNTSSSPSSDLYIRSVCF  129 (388)
T ss_dssp             EEEEEEEECSSCCCEEEECTTSSE-EEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEE
T ss_pred             eeeEeeCCCCCcEEEEEECCCCCE-EEEEe-CCeEEEEEecccceEeeeccccccc-ccccccccccccCCCCCEEEEEE
Confidence            345566789999999999999995 89987 8999999999998776422110000 00011122235678899999999


Q ss_pred             ccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEecc
Q 001295          421 SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH  500 (1106)
Q Consensus       421 spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h  500 (1106)
                      +|+|++|++|+.||.|++||...++.+.   .+.+|...|.+++|++++.  .+++++.++.+++||..+.........+
T Consensus       130 s~~~~~l~s~~~dg~v~i~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~~~~~~~~~~i~~~d~~~~~~~~~~~~~  204 (388)
T d1erja_         130 SPDGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLSIE  204 (388)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEECS
T ss_pred             CCCCCcceeccccccccccccccccccc---ccccccccccccccccccc--cccccccceeeeeeeccccccccccccc
Confidence            9999999999999999999999987665   5788999999999999998  7999999999999999999888877766


Q ss_pred             CCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCE
Q 001295          501 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR  580 (1106)
Q Consensus       501 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~  580 (1106)
                      ...+ ++.+. ..++.+|++++.||.|++||..+......+.....              ....+...+.++.|+|++++
T Consensus       205 ~~~~-~~~~~-~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~--------------~~~~h~~~v~~l~~s~~~~~  268 (388)
T d1erja_         205 DGVT-TVAVS-PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE--------------SGTGHKDSVYSVVFTRDGQS  268 (388)
T ss_dssp             SCEE-EEEEC-STTCCEEEEEETTSCEEEEETTTCCEEEEEC--------------------CCCSSCEEEEEECTTSSE
T ss_pred             cccc-ccccc-CCCCCeEEEEcCCCeEEEeecccCccceeeccccc--------------cccCCCCCEEEEEECCCCCE
Confidence            5544 44443 34568999999999999999998766554432110              00011235566666666778


Q ss_pred             EEEEECCCeEEEEECCCcceeEEE----------ccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhc
Q 001295          581 FLAAGDDFSIKFWDMDSVQLLTSI----------DADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE  650 (1106)
Q Consensus       581 l~~~~~d~~i~iwd~~~~~~~~~~----------~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  650 (1106)
                      |++++.|+.|++||+.++......          ....+...|.+++|+|++++|++|+.||.|++||+.++ +.+..+.
T Consensus       269 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~-~~~~~l~  347 (388)
T d1erja_         269 VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG-NPLLMLQ  347 (388)
T ss_dssp             EEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC-CEEEEEE
T ss_pred             EEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCC-cEEEEEe
Confidence            999999999999999765433221          11123457899999999999999999999999999887 4444444


Q ss_pred             c
Q 001295          651 N  651 (1106)
Q Consensus       651 ~  651 (1106)
                      +
T Consensus       348 ~  348 (388)
T d1erja_         348 G  348 (388)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.7e-33  Score=309.50  Aligned_cols=346  Identities=14%  Similarity=0.168  Sum_probs=264.1

Q ss_pred             eEEEeccCCCe-EEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEE
Q 001295          494 QYIFEGHEAPV-YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV  572 (1106)
Q Consensus       494 ~~~~~~h~~~v-~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~  572 (1106)
                      ..+|+||...| +|+.+  +  +++|++|+.||+|++||+.+++.+..+.+|...|.+++|++++               
T Consensus         5 ~~tL~GH~~~vitc~~~--~--~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~---------------   65 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--E--DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG---------------   65 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--E--TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTT---------------
T ss_pred             cEEECCcCCCcEEEEEE--C--CCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCC---------------
Confidence            45789998875 56654  3  3699999999999999999998888999999989888888765               


Q ss_pred             EEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhccc
Q 001295          573 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL  652 (1106)
Q Consensus       573 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  652 (1106)
                             +|++++.|+.|++|+....+..................+.+++.++++++.|+.|++||+.+.. ........
T Consensus        66 -------~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~-~~~~~~~~  137 (355)
T d1nexb2          66 -------ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES-SVPDHGEE  137 (355)
T ss_dssp             -------EEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------
T ss_pred             -------EEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCc-eecccccc
Confidence                   4999999999999999999888777655554445567788899999999999999999987762 11111000


Q ss_pred             ccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccc
Q 001295          653 AYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQC  732 (1106)
Q Consensus       653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~  732 (1106)
                      .                                                                               
T Consensus       138 ~-------------------------------------------------------------------------------  138 (355)
T d1nexb2         138 H-------------------------------------------------------------------------------  138 (355)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             c-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             eecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCC
Q 001295          733 RSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEA  812 (1106)
Q Consensus       733 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  812 (1106)
                                  ........+......       +...                                    ..|...
T Consensus       139 ------------~~~~~~~~~~~~~~~-------~~~~------------------------------------~~~~~~  163 (355)
T d1nexb2         139 ------------DYPLVFHTPEENPYF-------VGVL------------------------------------RGHMAS  163 (355)
T ss_dssp             ------------CCCEEESCTTTCTTE-------EEEE------------------------------------ECCSSC
T ss_pred             ------------eeccceeccccccce-------eeee------------------------------------eecccc
Confidence                        000000000000000       0000                                    003333


Q ss_pred             eeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEec
Q 001295          813 VPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK  891 (1106)
Q Consensus       813 v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~  891 (1106)
                      +  ..+.+++++++++. |+.|++||+.+++.+....++...+.++.|++ ++.++++++.||.|++||+.++..+..+.
T Consensus       164 v--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~~~~~~~~~  240 (355)
T d1nexb2         164 V--RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQ  240 (355)
T ss_dssp             E--EEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             c--cccccccceeeeecccceeeeeecccccceeeeeccccccccccccc-cceeeecccccceEEeeeccccccccccc
Confidence            3  34556788899888 89999999999999999999999999999999 89999999999999999999999999999


Q ss_pred             CcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEe
Q 001295          892 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFE  971 (1106)
Q Consensus       892 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d  971 (1106)
                      +|...|++++|+  +++|++++.||+|++||+.+...    .+.....     ......++++++++++++.|+.|++||
T Consensus       241 ~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~-----~~~~~~~~~~~~~~l~~g~d~~i~vwd  309 (355)
T d1nexb2         241 GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSR----KFSYHHT-----NLSAITTFYVSDNILVSGSENQFNIYN  309 (355)
T ss_dssp             CCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCE----EEEEECT-----TCCCCCEEEECSSEEEEEETTEEEEEE
T ss_pred             cccccccccccc--cceeeeeecccccccccccccce----ecccccC-----CceEEEEEcCCCCEEEEEeCCEEEEEE
Confidence            999999999996  56999999999999999987543    1222111     122345678899999999999999999


Q ss_pred             cCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEc
Q 001295          972 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1016 (1106)
Q Consensus       972 ~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~ 1016 (1106)
                      +++++++.... .+|..+|++++|+|+ .++++++.||+++||.+
T Consensus       310 ~~tg~~~~~~~-~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         310 LRSGKLVHANI-LKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             TTTCCBCCSCT-TTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred             CCCCCEEEEEe-cCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence            99999886533 378999999999987 57888999999777654

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.7e-32  Score=300.49  Aligned_cols=286  Identities=14%  Similarity=0.184  Sum_probs=238.2

Q ss_pred             ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEE
Q 001295          407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  486 (1106)
Q Consensus       407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw  486 (1106)
                      +|.||.+.|++|+|+|++++||+|+.||+|+|||+.+++.+.   .+.+|...|.+++|+|++.  ++++|+.|+.+++|
T Consensus        50 tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~v~~~~~~~--~l~~~~~d~~i~~~  124 (340)
T d1tbga_          50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIY  124 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE---EEECSCSCEEEEEECTTSS--EEEEEETTCCEEEE
T ss_pred             EECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEE---EEecccccEEeeEeeccce--eeeeecccceeecc
Confidence            478999999999999999999999999999999999988665   6788999999999999999  89999999999999


Q ss_pred             eCCCC----ceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEE
Q 001295          487 DATNG----AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ  562 (1106)
Q Consensus       487 d~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~  562 (1106)
                      +....    .....+.+|............   ..+.....|.....|.................+..            
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  189 (340)
T d1tbga_         125 NLKTREGNVRVSRELAGHTGYLSCCRFLDD---NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMS------------  189 (340)
T ss_dssp             ESSSSCSCCCEEEEECCCSSCEEEEEEEET---TEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEE------------
T ss_pred             cccccccccccceecccccccccccccccc---cccccccccccccccccccccccccccccceeEee------------
Confidence            97653    345677888887776664332   46888888999999988765554444444444444            


Q ss_pred             eeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295          563 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       563 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                               ..+.+.+.++++++.|+.|++||+.+++.+..+..|  ...|.+++|+|++++|++|+.||.|++|++...
T Consensus       190 ---------~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h--~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~  258 (340)
T d1tbga_         190 ---------LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH--ESDINAICFFPNGNAFATGSDDATCRLFDLRAD  258 (340)
T ss_dssp             ---------EEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             ---------eccccccceeEEeecCceEEEEECCCCcEEEEEeCC--CCCeEEEEECCCCCEEEEEeCCCeEEEEeeccc
Confidence                     444555558999999999999999999999999876  447999999999999999999999999997654


Q ss_pred             chhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEe
Q 001295          643 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK  722 (1106)
Q Consensus       643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~  722 (1106)
                      .. ..                                                                           
T Consensus       259 ~~-~~---------------------------------------------------------------------------  262 (340)
T d1tbga_         259 QE-LM---------------------------------------------------------------------------  262 (340)
T ss_dssp             EE-EE---------------------------------------------------------------------------
T ss_pred             cc-cc---------------------------------------------------------------------------
Confidence            10 00                                                                           


Q ss_pred             cCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCcccc
Q 001295          723 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN  802 (1106)
Q Consensus       723 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  802 (1106)
                                                                    .+.                               
T Consensus       263 ----------------------------------------------~~~-------------------------------  265 (340)
T d1tbga_         263 ----------------------------------------------TYS-------------------------------  265 (340)
T ss_dssp             ----------------------------------------------EEC-------------------------------
T ss_pred             ----------------------------------------------ccc-------------------------------
Confidence                                                          000                               


Q ss_pred             ccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEE
Q 001295          803 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN  880 (1106)
Q Consensus       803 ~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd  880 (1106)
                       .  ..+...|.+++|+|++++|++|+ ||.|++||+.+++.+..+.+|...|++++|+| ++++||+|+.||.|+|||
T Consensus       266 -~--~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~-d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         266 -H--DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             -C--TTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred             -c--ccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeC-CCCEEEEEccCCEEEEeC
Confidence             0  01556688899999999999998 89999999999999999999999999999999 899999999999999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.1e-32  Score=299.35  Aligned_cols=294  Identities=19%  Similarity=0.302  Sum_probs=247.9

Q ss_pred             cceeeecc-CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEE
Q 001295          341 KTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI  419 (1106)
Q Consensus       341 ~~~~~~~~-h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~  419 (1106)
                      .+..++|. |.+.|++++|+|++++ ||+|+.||+|+|||+.+++.+..                   +..|...|.+++
T Consensus        45 ~~~~~tL~GH~~~I~~l~~s~~~~~-l~sgs~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~v~  104 (340)
T d1tbga_          45 MRTRRTLRGHLAKIYAMHWGTDSRL-LVSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTCA  104 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSE-EEEEETTTEEEEEETTTTEEEEE-------------------EECSCSCEEEEE
T ss_pred             eeeeEEECCCCCCEEEEEECCCCCE-EEEEECCCceeeeecccceeEEE-------------------EecccccEEeeE
Confidence            34556665 9999999999999995 99999999999999999987763                   678999999999


Q ss_pred             EccCCCEEEEEeCCCeEEEEEccCCcee-eeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEe
Q 001295          420 WSPDGSLFGVAYSRHIVQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE  498 (1106)
Q Consensus       420 ~spdg~~las~~~d~~v~iwd~~~~~~~-~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  498 (1106)
                      |+|++++|++|+.|+.+++|+....... .....+.+|...........+.   .++....|.....|+...........
T Consensus       105 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (340)
T d1tbga_         105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFT  181 (340)
T ss_dssp             ECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETT---EEEEEETTTEEEEEETTTTEEEEEEE
T ss_pred             eeccceeeeeecccceeecccccccccccccceeccccccccccccccccc---cccccccccccccccccccccccccc
Confidence            9999999999999999999998765432 2334577888877777766554   57888889999999988888888888


Q ss_pred             ccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCC
Q 001295          499 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK  578 (1106)
Q Consensus       499 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~  578 (1106)
                      .+...+....+.+  .+.++++++.|+.|++||+++......+..|...|.+++|+|+++                    
T Consensus       182 ~~~~~~~~~~~~~--~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~--------------------  239 (340)
T d1tbga_         182 GHTGDVMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN--------------------  239 (340)
T ss_dssp             CCSSCEEEEEECT--TSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSS--------------------
T ss_pred             ccceeEeeecccc--ccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCC--------------------
Confidence            8888888888654  447899999999999999999888878877777777776666655                    


Q ss_pred             CEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhccccccccc
Q 001295          579 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASR  658 (1106)
Q Consensus       579 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  658 (1106)
                       +|++++.|+.|++|++.....+..+....+...+.+++|+|++++|++|+.||.|++||+.++ +.+..+         
T Consensus       240 -~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~---------  308 (340)
T d1tbga_         240 -AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA-DRAGVL---------  308 (340)
T ss_dssp             -EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTC-CEEEEE---------
T ss_pred             -EEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCC-cEEEEE---------
Confidence             799999999999999999998888876666677999999999999999999999999998776 222222         


Q ss_pred             CCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccC
Q 001295          659 TSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLP  738 (1106)
Q Consensus       659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~  738 (1106)
                                                                                                      
T Consensus       309 --------------------------------------------------------------------------------  308 (340)
T d1tbga_         309 --------------------------------------------------------------------------------  308 (340)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccceEEEEEcCCCceEEEeecCceEEEee
Q 001295          739 ENLRATKISRLIFTNSGNAILALASNAIHLLWK  771 (1106)
Q Consensus       739 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~  771 (1106)
                       .+|...|.+++|+|++++|++++.||.|++||
T Consensus       309 -~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         309 -AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             -CCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             -cCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence             13778899999999999999999999999996

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-32  Score=299.83  Aligned_cols=317  Identities=19%  Similarity=0.289  Sum_probs=249.1

Q ss_pred             ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEE
Q 001295          407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  486 (1106)
Q Consensus       407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw  486 (1106)
                      ++.||.+.|.+ +++++|++||||+.||+|+|||+.+++.++   ++.+|.+.|.+++|+++    +|++|+.|+++++|
T Consensus        11 ~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~---~~~~h~~~V~~v~~~~~----~l~s~s~D~~~~~~   82 (342)
T d2ovrb2          11 VLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR---TLVGHTGGVWSSQMRDN----IIISGSTDRTLKVW   82 (342)
T ss_dssp             EEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE---ECCCCSSCEEEEEEETT----EEEEEETTSCEEEE
T ss_pred             EECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEE---EEeCCCCCEEEEEeCCC----ccccceeccccccc
Confidence            58999999865 477789999999999999999999998765   68899999999999874    79999999999999


Q ss_pred             eCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeec
Q 001295          487 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  566 (1106)
Q Consensus       487 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  566 (1106)
                      +............+...+......  .  ..+..+..|+.+.+|+..+......+........                 
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~-----------------  141 (342)
T d2ovrb2          83 NAETGECIHTLYGHTSTVRCMHLH--E--KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR-----------------  141 (342)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEE--T--TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEE-----------------
T ss_pred             ccccccceecccccceeEeeeecc--c--ccccccccceeEEEeecccccceeeeecccccce-----------------
Confidence            999888887777777777666532  2  4688899999999999988766554443332211                 


Q ss_pred             cceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhh
Q 001295          567 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL  646 (1106)
Q Consensus       567 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  646 (1106)
                            ...+....+++++.|+.|++||....+.+..+..+.    .....+.+++.++++++.||.|++||+..+. .+
T Consensus       142 ------~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~-~~  210 (342)
T d2ovrb2         142 ------CVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT----NRVYSLQFDGIHVVSGSLDTSIRVWDVETGN-CI  210 (342)
T ss_dssp             ------EEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCS----SCEEEEEECSSEEEEEETTSCEEEEETTTCC-EE
T ss_pred             ------eeccccceeeeecCCCeEEEeecccceeeEEEcCcc----cccccccCCCCEEEEEeCCCeEEEeecccce-ee
Confidence                  122233458899999999999999998888887653    3456677789999999999999999976541 11


Q ss_pred             hhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCC
Q 001295          647 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL  726 (1106)
Q Consensus       647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~  726 (1106)
                      ..+                                                                             
T Consensus       211 ~~~-----------------------------------------------------------------------------  213 (342)
T d2ovrb2         211 HTL-----------------------------------------------------------------------------  213 (342)
T ss_dssp             EEE-----------------------------------------------------------------------------
T ss_pred             eEe-----------------------------------------------------------------------------
Confidence            000                                                                             


Q ss_pred             CCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCC
Q 001295          727 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  806 (1106)
Q Consensus       727 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  806 (1106)
                                                                                                      
T Consensus       214 --------------------------------------------------------------------------------  213 (342)
T d2ovrb2         214 --------------------------------------------------------------------------------  213 (342)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecC---CCCCeeEEEEecCCCceEEEeeCCCcEEEEEee
Q 001295          807 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP---PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR  882 (1106)
Q Consensus       807 ~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~---~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~  882 (1106)
                      ..|...+.+++++  +++|++++ ||.|++||+...+....+..   |...+.++.++   +.++++|+.||.|++||+.
T Consensus       214 ~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~s~s~Dg~i~iwd~~  288 (342)
T d2ovrb2         214 TGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN---KNFVITSSDDGTVKLWDLK  288 (342)
T ss_dssp             CCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC---SSEEEEEETTSEEEEEETT
T ss_pred             cccccceeEEecC--CCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC---CCeeEEEcCCCEEEEEECC
Confidence            0144455555554  45788887 88899999888777766654   44556666664   4699999999999999999


Q ss_pred             cceEEEEec-----CcccCeeEEEEecCCCEEEEEcCCCc----EEEEeCCC
Q 001295          883 VDEVKSKLK-----GHSKRITGLAFSHALNVLVSSGADSQ----LCVWSSDG  925 (1106)
Q Consensus       883 ~~~~~~~l~-----~h~~~V~~l~~s~d~~~l~s~s~Dg~----i~vwd~~~  925 (1106)
                      +++++..+.     +|...|++++|+|++.+||+|+.||+    |++||++.
T Consensus       289 tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         289 TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             TCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            999888773     58889999999999999999999996    99999874

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.9e-32  Score=304.97  Aligned_cols=307  Identities=15%  Similarity=0.183  Sum_probs=227.0

Q ss_pred             CcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCC
Q 001295          412 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG  491 (1106)
Q Consensus       412 ~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~  491 (1106)
                      ..+|+|++|||||++||+|+.|+.|+|||+.+++. .....+.+|.++|.+++|+|+++  +|++|+.|++|+|||+.++
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~-~~~~~l~gH~~~V~~l~fsp~~~--~l~s~s~D~~i~vWd~~~~   83 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-VQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWTLKGR   83 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-EEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEEEETT
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCE-EEEEEecCCCCCEEEEEECCCCC--EEEEEECCCeEEEEeeccc
Confidence            35899999999999999999999999999988763 34457889999999999999999  8999999999999999876


Q ss_pred             cee--EEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccce
Q 001295          492 AKQ--YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL  569 (1106)
Q Consensus       492 ~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i  569 (1106)
                      ...  ..+.+|...|.+++|+++  ++.|++|+.|+.|++|++........                             
T Consensus        84 ~~~~~~~~~~~~~~v~~i~~~p~--~~~l~~~s~d~~i~i~~~~~~~~~~~-----------------------------  132 (371)
T d1k8kc_          84 TWKPTLVILRINRAARCVRWAPN--EKKFAVGSGSRVISICYFEQENDWWV-----------------------------  132 (371)
T ss_dssp             EEEEEEECCCCSSCEEEEEECTT--SSEEEEEETTSSEEEEEEETTTTEEE-----------------------------
T ss_pred             ccccccccccccccccccccccc--cccceeecccCcceeeeeeccccccc-----------------------------
Confidence            544  445677788888887554  46777777777777776543211100                             


Q ss_pred             eEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhh
Q 001295          570 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF  649 (1106)
Q Consensus       570 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  649 (1106)
                                                    ......  .+...|.+++|+|++++|++|+.|+.+++|+..... .....
T Consensus       133 ------------------------------~~~~~~--~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~-~~~~~  179 (371)
T d1k8kc_         133 ------------------------------CKHIKK--PIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKE-VEERP  179 (371)
T ss_dssp             ------------------------------EEEECT--TCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTT-TSCCC
T ss_pred             ------------------------------cccccc--ccccccccccccccccceeccccCcEEEEEeeccCc-ccccc
Confidence                                          001111  223468899999999999999999999999986541 00000


Q ss_pred             cccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCC
Q 001295          650 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP  729 (1106)
Q Consensus       650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~  729 (1106)
                      .                                                                   ...|+..     
T Consensus       180 ~-------------------------------------------------------------------~~~~~~~-----  187 (371)
T d1k8kc_         180 A-------------------------------------------------------------------PTPWGSK-----  187 (371)
T ss_dssp             C-------------------------------------------------------------------CBTTBSC-----
T ss_pred             c-------------------------------------------------------------------ccccccc-----
Confidence            0                                                                   0000000     


Q ss_pred             ccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCC
Q 001295          730 NQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP  809 (1106)
Q Consensus       730 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  809 (1106)
                                            .+.+..+.                                             ....|
T Consensus       188 ----------------------~~~~~~~~---------------------------------------------~~~~~  200 (371)
T d1k8kc_         188 ----------------------MPFGELMF---------------------------------------------ESSSS  200 (371)
T ss_dssp             ----------------------CCTTCEEE---------------------------------------------ECCCC
T ss_pred             ----------------------ccceeeee---------------------------------------------eccCc
Confidence                                  00000000                                             00127


Q ss_pred             CCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecc--eE
Q 001295          810 EEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD--EV  886 (1106)
Q Consensus       810 ~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~--~~  886 (1106)
                      ...|.+++|+|++++|++++ |+.|++||+.++..+..+..|..+|.+++|+| ++++|++|. |+.+++|.....  ..
T Consensus       201 ~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~-d~~~la~g~-d~~~~~~~~~~~~~~~  278 (371)
T d1k8kc_         201 CGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFIT-ESSLVAAGH-DCFPVLFTYDSAAGKL  278 (371)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEE-TTEEEEEET-TSSCEEEEEETTTTEE
T ss_pred             cCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccceeeeecC-CCCEEEEEc-CCceEEEEeeCCCceE
Confidence            88899999999999999998 89999999999999999999999999999999 888888765 777777765431  11


Q ss_pred             EE---------------------------------------EecCcccCeeEEEEecCC----CEEEEEcCCCcEEEEeC
Q 001295          887 KS---------------------------------------KLKGHSKRITGLAFSHAL----NVLVSSGADSQLCVWSS  923 (1106)
Q Consensus       887 ~~---------------------------------------~l~~h~~~V~~l~~s~d~----~~l~s~s~Dg~i~vwd~  923 (1106)
                      ..                                       ....|.+.|+++++.+++    ..++|+|.||+|+|||+
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~  358 (371)
T d1k8kc_         279 SFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV  358 (371)
T ss_dssp             EECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred             EEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeC
Confidence            00                                       001388899999998764    46899999999999999


Q ss_pred             CCc
Q 001295          924 DGW  926 (1106)
Q Consensus       924 ~~~  926 (1106)
                      ++.
T Consensus       359 ~~~  361 (371)
T d1k8kc_         359 RSL  361 (371)
T ss_dssp             HHH
T ss_pred             CcC
Confidence            763

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.1e-32  Score=308.57  Aligned_cols=263  Identities=12%  Similarity=0.074  Sum_probs=204.6

Q ss_pred             CCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEE
Q 001295          350 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV  429 (1106)
Q Consensus       350 ~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las  429 (1106)
                      .++|+|++|||||+ +||+|+.||.|+|||+.+++.....                 .+.+|.++|.+++|+|++++|++
T Consensus         7 ~~pIt~~~~s~dg~-~la~~~~~~~i~iw~~~~~~~~~~~-----------------~l~gH~~~V~~l~fsp~~~~l~s   68 (371)
T d1k8kc_           7 VEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVH-----------------ELKEHNGQVTGVDWAPDSNRIVT   68 (371)
T ss_dssp             SSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEE-----------------EEECCSSCEEEEEEETTTTEEEE
T ss_pred             CCCeEEEEECCCCC-EEEEEeCCCEEEEEECCCCCEEEEE-----------------EecCCCCCEEEEEECCCCCEEEE
Confidence            47899999999999 4999999999999999877543321                 36899999999999999999999


Q ss_pred             EeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCcee----EEEeccCCCeE
Q 001295          430 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ----YIFEGHEAPVY  505 (1106)
Q Consensus       430 ~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~----~~~~~h~~~v~  505 (1106)
                      |+.|++|+|||+.++... ....+.+|...|.+++|+|+++  .|++|+.|++|++|++......    .....|...|.
T Consensus        69 ~s~D~~i~vWd~~~~~~~-~~~~~~~~~~~v~~i~~~p~~~--~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~  145 (371)
T d1k8kc_          69 CGTDRNAYVWTLKGRTWK-PTLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVL  145 (371)
T ss_dssp             EETTSCEEEEEEETTEEE-EEEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEE
T ss_pred             EECCCeEEEEeecccccc-cccccccccccccccccccccc--cceeecccCcceeeeeecccccccccccccccccccc
Confidence            999999999999987643 3345678999999999999999  8999999999999998766543    34457899999


Q ss_pred             EEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEE-eeeccceeEEEEcCCCCEEEEE
Q 001295          506 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ-GFRKRSLGVVQFDTTKNRFLAA  584 (1106)
Q Consensus       506 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~  584 (1106)
                      +++|+|  ++.+|++|+.|++|++||................    ...+.+..+.. ..+...+..++|+|++++++++
T Consensus       146 ~v~~~p--~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~  219 (371)
T d1k8kc_         146 SLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG----SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV  219 (371)
T ss_dssp             EEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTB----SCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEE
T ss_pred             cccccc--cccceeccccCcEEEEEeeccCcccccccccccc----ccccceeeeeeccCccCcEEEEEeeccccccccc
Confidence            999865  5579999999999999998754322211100000    00011111111 1223457778888888899999


Q ss_pred             ECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295          585 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       585 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                      +.|+.|++||+.+++.+..+..+.  ..|.+++|+|++++|++|+ |+.+++|.....
T Consensus       220 ~~d~~i~iwd~~~~~~~~~~~~~~--~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~  274 (371)
T d1k8kc_         220 SHDSTVCLADADKKMAVATLASET--LPLLAVTFITESSLVAAGH-DCFPVLFTYDSA  274 (371)
T ss_dssp             ETTTEEEEEEGGGTTEEEEEECSS--CCEEEEEEEETTEEEEEET-TSSCEEEEEETT
T ss_pred             ccCCcceEEeeecccceeeeeccc--ccceeeeecCCCCEEEEEc-CCceEEEEeeCC
Confidence            999999999999999999988764  4799999999998887665 677777766543

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-31  Score=293.29  Aligned_cols=325  Identities=19%  Similarity=0.265  Sum_probs=248.3

Q ss_pred             eeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEE
Q 001295          449 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIK  528 (1106)
Q Consensus       449 ~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~  528 (1106)
                      ....|+||.+.|.+ +++++|+  +|+||+.||+|+|||+.++++++++.+|.+.|.+++|++    .+|++|+.|+.++
T Consensus         8 ~~~~l~GH~~~V~s-~~~~~g~--~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~----~~l~s~s~D~~~~   80 (342)
T d2ovrb2           8 SPKVLKGHDDHVIT-CLQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD----NIIISGSTDRTLK   80 (342)
T ss_dssp             CCEEEECSTTSCEE-EEEEETT--EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET----TEEEEEETTSCEE
T ss_pred             cCEEECCcCCceEE-EEEECCC--EEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC----Cccccceeccccc
Confidence            33478999999865 4666788  899999999999999999999999999999999999853    3899999999999


Q ss_pred             EEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCC
Q 001295          529 AWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG  608 (1106)
Q Consensus       529 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  608 (1106)
                      +|+................+......                       ...+..+..|+.+.+|+..+++....+....
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~  137 (342)
T d2ovrb2          81 VWNAETGECIHTLYGHTSTVRCMHLH-----------------------EKRVVSGSRDATLRVWDIETGQCLHVLMGHV  137 (342)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEE-----------------------TTEEEEEETTSEEEEEESSSCCEEEEEECCS
T ss_pred             ccccccccceecccccceeEeeeecc-----------------------cccccccccceeEEEeecccccceeeeeccc
Confidence            99988765554444443333332222                       2357888999999999999988877765432


Q ss_pred             CCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccc
Q 001295          609 GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAA  688 (1106)
Q Consensus       609 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  688 (1106)
                          .....+.+....+++++.|+.+++||..... .+..+.                                      
T Consensus       138 ----~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~-~~~~~~--------------------------------------  174 (342)
T d2ovrb2         138 ----AAVRCVQYDGRRVVSGAYDFMVKVWDPETET-CLHTLQ--------------------------------------  174 (342)
T ss_dssp             ----SCEEEEEECSSCEEEEETTSCEEEEEGGGTE-EEEEEC--------------------------------------
T ss_pred             ----ccceeeccccceeeeecCCCeEEEeecccce-eeEEEc--------------------------------------
Confidence                2345556677788888889999999865431 000000                                      


Q ss_pred             cccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEE
Q 001295          689 SMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHL  768 (1106)
Q Consensus       689 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  768 (1106)
                                                                                                      
T Consensus       175 --------------------------------------------------------------------------------  174 (342)
T d2ovrb2         175 --------------------------------------------------------------------------------  174 (342)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeee
Q 001295          769 LWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATF  847 (1106)
Q Consensus       769 iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~  847 (1106)
                                                             +|..  ....+++++.++++++ ||.|++||+..++.+..+
T Consensus       175 ---------------------------------------~~~~--~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~  213 (342)
T d2ovrb2         175 ---------------------------------------GHTN--RVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTL  213 (342)
T ss_dssp             ---------------------------------------CCSS--CEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             ---------------------------------------Cccc--ccccccCCCCEEEEEeCCCeEEEeecccceeeeEe
Confidence                                                   0222  2334455788899988 899999999999999999


Q ss_pred             cCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecC---cccCeeEEEEecCCCEEEEEcCCCcEEEEeCC
Q 001295          848 MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG---HSKRITGLAFSHALNVLVSSGADSQLCVWSSD  924 (1106)
Q Consensus       848 ~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~---h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~  924 (1106)
                      .+|...+.++++++   ++|++|+.||.|++||+...+....+.+   |...+.++.+  ++.++++|+.||+|++||+.
T Consensus       214 ~~~~~~v~~~~~~~---~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~  288 (342)
T d2ovrb2         214 TGHQSLTSGMELKD---NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLK  288 (342)
T ss_dssp             CCCCSCEEEEEEET---TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETT
T ss_pred             cccccceeEEecCC---CEEEEEcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECC
Confidence            99999999888865   5999999999999999998887777765   4556666655  56799999999999999998


Q ss_pred             CcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEE
Q 001295          925 GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYA 1004 (1106)
Q Consensus       925 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t 1004 (1106)
                      +++....                                              +......+|...|++++|+|++.+|++
T Consensus       289 tg~~i~~----------------------------------------------~~~~~~~~~~~~v~~v~~s~~~~~la~  322 (342)
T d2ovrb2         289 TGEFIRN----------------------------------------------LVTLESGGSGGVVWRIRASNTKLVCAV  322 (342)
T ss_dssp             TCCEEEE----------------------------------------------EEECTTGGGTCEEEEEEECSSEEEEEE
T ss_pred             CCCEEEE----------------------------------------------EecccCCCCCCCEEEEEECCCCCEEEE
Confidence            8543110                                              001112367889999999999999999


Q ss_pred             EEcCCe----EEEEEcCC
Q 001295         1005 CFLDAT----VCVFSAAN 1018 (1106)
Q Consensus      1005 ~s~Dg~----i~vwd~~~ 1018 (1106)
                      |+.||+    |++||++.
T Consensus       323 g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         323 GSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             ECSSSSSCCEEEEEECCC
T ss_pred             EeCCCCCeeEEEEEeCCC
Confidence            999986    99999863

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.3e-31  Score=288.22  Aligned_cols=294  Identities=15%  Similarity=0.153  Sum_probs=226.6

Q ss_pred             cceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhh
Q 001295          598 VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAA  677 (1106)
Q Consensus       598 ~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  677 (1106)
                      |+..+.+.+|  ...|++++|+|++++|++|+.||+|++||+.++ +..+.+.                           
T Consensus         2 g~~~~~~~GH--~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~-~~~~~~~---------------------------   51 (299)
T d1nr0a2           2 GSIDQVRYGH--NKAITALSSSADGKTLFSADAEGHINSWDISTG-ISNRVFP---------------------------   51 (299)
T ss_dssp             TEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEECSS---------------------------
T ss_pred             CccceEcCCC--CCCcEEEEECCCCCEEEEEcCCCeEEEEECCCC-cEEEEEc---------------------------
Confidence            5667778776  558999999999999999999999999999876 2211110                           


Q ss_pred             hcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCce
Q 001295          678 ATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA  757 (1106)
Q Consensus       678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  757 (1106)
                                                                                    ..|...|.+++|+|++. 
T Consensus        52 --------------------------------------------------------------~~h~~~v~~v~~~~~g~-   68 (299)
T d1nr0a2          52 --------------------------------------------------------------DVHATMITGIKTTSKGD-   68 (299)
T ss_dssp             --------------------------------------------------------------CSCSSCEEEEEECTTSC-
T ss_pred             --------------------------------------------------------------CCCCCcEEEEEeeccce-
Confidence                                                                          12678899999999997 


Q ss_pred             EEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEE
Q 001295          758 ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFN  837 (1106)
Q Consensus       758 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd  837 (1106)
                      +++++.|+.+++|+........                 ....   .  ..+...+.+++++++++++++++++.+++|+
T Consensus        69 ~~~~~~d~~v~~~~~~~~~~~~-----------------~~~~---~--~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~  126 (299)
T d1nr0a2          69 LFTVSWDDHLKVVPAGGSGVDS-----------------SKAV---A--NKLSSQPLGLAVSADGDIAVAACYKHIAIYS  126 (299)
T ss_dssp             EEEEETTTEEEEECSSSSSSCT-----------------TSCC---E--EECSSCEEEEEECTTSSCEEEEESSEEEEEE
T ss_pred             eecccceeeEEEeccCCccccc-----------------cccc---c--ccccccccccccccccccccccccccccccc
Confidence            6677789999999865321100                 0000   0  1267788999999999999999999999999


Q ss_pred             cCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEE-EecCcccCeeEEEEecCCCEEEEEcCCC
Q 001295          838 MMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS-KLKGHSKRITGLAFSHALNVLVSSGADS  916 (1106)
Q Consensus       838 ~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~-~l~~h~~~V~~l~~s~d~~~l~s~s~Dg  916 (1106)
                      ...  .....  ....+.+++|+| ++++|++|+.||.|++||+.+++... ....|...|++++|+|++++|++++.|+
T Consensus       127 ~~~--~~~~~--~~~~~~~~~~s~-~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  201 (299)
T d1nr0a2         127 HGK--LTEVP--ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSR  201 (299)
T ss_dssp             TTE--EEEEE--CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccc--ccccc--cccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            543  22222  334688999999 89999999999999999999887554 4457999999999999999999999999


Q ss_pred             cEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCCeEEEEecCCceEeeecccCCC-CCCeeEEE
Q 001295          917 QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRES-SAPITHAT  994 (1106)
Q Consensus       917 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d~~~~~~~~~~~~~~h-~~~v~~l~  994 (1106)
                      .|++||+.++....  ......+|.   ..|.+++|+|++++|++ +.|+.|++||++++..........| ...|.++.
T Consensus       202 ~i~~~~~~~~~~~~--~~~~~~~h~---~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  276 (299)
T d1nr0a2         202 KVIPYSVANNFELA--HTNSWTFHT---AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVI  276 (299)
T ss_dssp             CEEEEEGGGTTEES--CCCCCCCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEE
T ss_pred             cccccccccccccc--ccccccccc---cccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEE
Confidence            99999998754321  222333443   47899999999999999 5889999999988765444333344 45666665


Q ss_pred             ECCCCCEEEEEEcCCeEEEEEcC
Q 001295          995 FSCDSQLVYACFLDATVCVFSAA 1017 (1106)
Q Consensus       995 ~s~d~~~l~t~s~Dg~i~vwd~~ 1017 (1106)
                      | +++++|++|+.||+|++||+.
T Consensus       277 ~-~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         277 W-LNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             E-EETTEEEEEETTSCEEEEECC
T ss_pred             E-CCCCEEEEEeCCCEEEEEecc
Confidence            5 667899999999999999974

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.9e-31  Score=287.38  Aligned_cols=281  Identities=17%  Similarity=0.239  Sum_probs=210.8

Q ss_pred             eeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEe-ccCCCeEEEeccccCCceEEEEEecCCeEEEE
Q 001295          452 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAW  530 (1106)
Q Consensus       452 ~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw  530 (1106)
                      .+.||.+.|++++|+||++  +|+||+.||+|++||+++++++..+. +|...|++++|+++.  . +++++.|+.+++|
T Consensus         7 ~~~GH~~~V~~l~~s~dg~--~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g--~-~~~~~~d~~v~~~   81 (299)
T d1nr0a2           7 VRYGHNKAITALSSSADGK--TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG--D-LFTVSWDDHLKVV   81 (299)
T ss_dssp             EECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS--C-EEEEETTTEEEEE
T ss_pred             EcCCCCCCcEEEEECCCCC--EEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccc--e-eecccceeeEEEe
Confidence            6889999999999999999  89999999999999999999988874 689999999987653  3 6778889999999


Q ss_pred             eCCCCCce---eEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccC
Q 001295          531 LYDNLGSR---VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD  607 (1106)
Q Consensus       531 d~~~~~~~---~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  607 (1106)
                      +.......   .....+...+..++++++++                     .+ +++.++.+++|+...  ....... 
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~---------------------~~-~~~~~~~i~~~~~~~--~~~~~~~-  136 (299)
T d1nr0a2          82 PAGGSGVDSSKAVANKLSSQPLGLAVSADGD---------------------IA-VAACYKHIAIYSHGK--LTEVPIS-  136 (299)
T ss_dssp             CSSSSSSCTTSCCEEECSSCEEEEEECTTSS---------------------CE-EEEESSEEEEEETTE--EEEEECS-
T ss_pred             ccCCccccccccccccccccccccccccccc---------------------cc-ccccccccccccccc--ccccccc-
Confidence            98653321   11222334445555555554                     44 445567899999543  3332221 


Q ss_pred             CCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhccccccccc
Q 001295          608 GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA  687 (1106)
Q Consensus       608 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  687 (1106)
                         ..+.+++|+|+++++++|+.||.|++||+.++. ...                                        
T Consensus       137 ---~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~-~~~----------------------------------------  172 (299)
T d1nr0a2         137 ---YNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS-VSE----------------------------------------  172 (299)
T ss_dssp             ---SCEEEEEECTTSCEEEEEETTSEEEEEEEETTE-EEE----------------------------------------
T ss_pred             ---ccccccccccccccccccccccccccccccccc-ccc----------------------------------------
Confidence               246789999999999999999999999986541 000                                        


Q ss_pred             ccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceE
Q 001295          688 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH  767 (1106)
Q Consensus       688 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  767 (1106)
                                                                                            +         
T Consensus       173 ----------------------------------------------------------------------~---------  173 (299)
T d1nr0a2         173 ----------------------------------------------------------------------V---------  173 (299)
T ss_dssp             ----------------------------------------------------------------------E---------
T ss_pred             ----------------------------------------------------------------------c---------
Confidence                                                                                  0         


Q ss_pred             EEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCcee--
Q 001295          768 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM--  844 (1106)
Q Consensus       768 ~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~--  844 (1106)
                      ..                                     ..|...|++++|+|++++|++++ |+.|++||+.++...  
T Consensus       174 ~~-------------------------------------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~  216 (299)
T d1nr0a2         174 KT-------------------------------------IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH  216 (299)
T ss_dssp             EE-------------------------------------EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC
T ss_pred             cc-------------------------------------ccccccccccccccccccccccccccccccccccccccccc
Confidence            00                                     00566677888888888888877 788888888766544  


Q ss_pred             -eeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceE--EEEecCc-ccCeeEEEEecCCCEEEEEcCCCcEEE
Q 001295          845 -ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV--KSKLKGH-SKRITGLAFSHALNVLVSSGADSQLCV  920 (1106)
Q Consensus       845 -~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~--~~~l~~h-~~~V~~l~~s~d~~~l~s~s~Dg~i~v  920 (1106)
                       ..+.+|...|++++|+| ++++|++|+.||.|++||+.++..  ......| ...|.++.| +++.+|++++.|++|++
T Consensus       217 ~~~~~~h~~~v~~l~~s~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~i  294 (299)
T d1nr0a2         217 TNSWTFHTAKVACVSWSP-DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKF  294 (299)
T ss_dssp             CCCCCCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEE
T ss_pred             cccccccccccccccccc-cccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEE
Confidence             34567889999999999 899999999999999999987643  2333344 455666655 56789999999999999


Q ss_pred             EeCC
Q 001295          921 WSSD  924 (1106)
Q Consensus       921 wd~~  924 (1106)
                      ||+.
T Consensus       295 Wdl~  298 (299)
T d1nr0a2         295 WNVP  298 (299)
T ss_dssp             EECC
T ss_pred             Eecc
Confidence            9984

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=9.4e-30  Score=278.37  Aligned_cols=288  Identities=14%  Similarity=0.141  Sum_probs=218.3

Q ss_pred             cceEEEEEcCCCceEEEeecCc-eEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEec--
Q 001295          744 TKISRLIFTNSGNAILALASNA-IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK--  820 (1106)
Q Consensus       744 ~~i~~~~~s~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~--  820 (1106)
                      ..+.+++|+|+++.++.++.+. .++.|+......                    . ....+.+ .+...|++++|+|  
T Consensus        18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~--------------------~-~~~~~~g-h~~~~v~~v~fsP~~   75 (325)
T d1pgua1          18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKV--------------------P-PVVQFTG-HGSSVVTTVKFSPIK   75 (325)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSS--------------------C-SEEEECT-TTTSCEEEEEECSST
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCc--------------------c-ceEEEeC-CCCCCEEEEEEeeCC
Confidence            4567899999999998876653 355554321100                    0 0111222 1356799999998  


Q ss_pred             CCCEEEEEe-CCeEEEEEcCCCceee--------eecCCCCCeeEEEEecCCCceEEEee--CCCcEEEEEeecceEEEE
Q 001295          821 NDSYVMSAS-GGKISLFNMMTFKTMA--------TFMPPPPAATFLAFHPQDNNIIAIGM--DDSSIQIYNVRVDEVKSK  889 (1106)
Q Consensus       821 ~~~~l~~~s-dg~i~vwd~~~~~~~~--------~~~~~~~~v~~l~~s~~d~~~la~g~--~dg~v~iwd~~~~~~~~~  889 (1106)
                      ++++|++|+ ||+|+|||+..++...        .+..|.++|.+++|++ ++++|++++  .++.+++|+..+++++..
T Consensus        76 ~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  154 (325)
T d1pgua1          76 GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWDSGNSLGE  154 (325)
T ss_dssp             TCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETTTCCEEEE
T ss_pred             CCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECC-CCCccceeeccccceEEEEeeccccccee
Confidence            678999998 9999999997654332        3456888999999999 888887765  467899999999999999


Q ss_pred             ecCcccCeeEEEEecCCCE-EEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCC-CcEEEE-EeCCe
Q 001295          890 LKGHSKRITGLAFSHALNV-LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-QIHFLV-VHETQ  966 (1106)
Q Consensus       890 l~~h~~~V~~l~~s~d~~~-l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~d-g~~l~~-~~d~~  966 (1106)
                      +.+|...|++++|+|++.+ +++++.|+.|++|++.+.+...  ......++.   ..|.+++|+|+ +.++++ +.|+.
T Consensus       155 ~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~--~~~~~~~~~---~~v~~v~~~pd~~~~l~s~~~d~~  229 (325)
T d1pgua1         155 VSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSA--SDRTHHKQG---SFVRDVEFSPDSGEFVITVGSDRK  229 (325)
T ss_dssp             CCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEE--EECSSSCTT---CCEEEEEECSTTCCEEEEEETTCC
T ss_pred             eeecccccccccccccccceEEEeecccccccccccccccce--ecccccCCC---CccEEeeeccccceeccccccccc
Confidence            9999999999999999875 7789999999999998755322  222233333   47899999997 677777 58999


Q ss_pred             EEEEecCCceEeeecccCCCCCCeeEEEEC---CCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccce
Q 001295          967 LAIFETTKLECVKQWVPRESSAPITHATFS---CDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPL 1043 (1106)
Q Consensus       967 v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s---~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1043 (1106)
                      |++||+++++++..+.  +|..++.++.|+   |||++|++++.|++|+|||+.+++.+..+..+..      ...+..+
T Consensus       230 i~iwd~~~~~~~~~l~--~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~------~~~~~~~  301 (325)
T d1pgua1         230 ISCFDGKSGEFLKYIE--DDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ------QLGNQQV  301 (325)
T ss_dssp             EEEEETTTCCEEEECC--BTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTT------CGGGCEE
T ss_pred             eeeeeecccccccccc--ccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCC------cccCeEE
Confidence            9999999999998876  677777666555   7899999999999999999999999887762211      1113333


Q ss_pred             EEEEeCCCCCEEEEEeCCCcEEEEee
Q 001295         1044 VIAAHPQEPNEFALGLSDGGVHVFEP 1069 (1106)
Q Consensus      1044 ~~~~~~~d~~~l~t~~~Dg~v~vW~~ 1069 (1106)
                      ++.+.+  +.+|++++.||+|++||+
T Consensus       302 ~~~~~~--~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         302 GVVATG--NGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEEEE--TTEEEEEETTSCEEEEET
T ss_pred             EEEECC--CCEEEEEECCCEEEEEEC
Confidence            455544  468999999999999996

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=5.3e-29  Score=272.29  Aligned_cols=255  Identities=15%  Similarity=0.205  Sum_probs=193.3

Q ss_pred             CCcEEEEEecCCCeEEEEEecc-CcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCC-CcCeEEEEEcc--CCCE
Q 001295          351 SSPMSMDFHPVQQTLLLVGTNV-GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP-GVSVNRVIWSP--DGSL  426 (1106)
Q Consensus       351 ~~v~~~~~sp~g~~llatg~~d-g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h-~~~V~~l~~sp--dg~~  426 (1106)
                      ..+++++|+|+|+. ||.++.+ ..|+.||....+....                 ..+.+| ...|++++|+|  +|++
T Consensus        18 ~~~t~l~~~~~~~~-la~~~~~~~~i~~~~~~~~~~~~~-----------------~~~~gh~~~~v~~v~fsP~~~g~~   79 (325)
T d1pgua1          18 NFTTHLSYDPTTNA-IAYPCGKSAFVRCLDDGDSKVPPV-----------------VQFTGHGSSVVTTVKFSPIKGSQY   79 (325)
T ss_dssp             TCCCCCEEETTTTE-EEEEETTEEEEEECCSSCCSSCSE-----------------EEECTTTTSCEEEEEECSSTTCCE
T ss_pred             CCeEEEEECCCCCE-EEEEeCCCEEEEEEeCCCCCccce-----------------EEEeCCCCCCEEEEEEeeCCCCCE
Confidence            45789999999996 6666543 3456666543322111                 024566 56899999998  6789


Q ss_pred             EEEEeCCCeEEEEEccCCceeeee-----eeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccC
Q 001295          427 FGVAYSRHIVQIYSYHGGDEVRQH-----LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE  501 (1106)
Q Consensus       427 las~~~d~~v~iwd~~~~~~~~~~-----~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~  501 (1106)
                      ||+|+.||+|+|||+..++.....     ..+..|.++|.+++|+++++.+..++++.++.+++|+..+++++..+.+|.
T Consensus        80 lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  159 (325)
T d1pgua1          80 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHS  159 (325)
T ss_dssp             EEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCS
T ss_pred             EEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecc
Confidence            999999999999999876543221     235578899999999999995333344568899999999999999999999


Q ss_pred             CCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEee---CCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCC
Q 001295          502 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE---APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK  578 (1106)
Q Consensus       502 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~  578 (1106)
                      ..|.+++|++..+ .++++++.|+.+++||....+......   .+...|.+++|+|++                    +
T Consensus       160 ~~v~~~~~~~~~~-~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~--------------------~  218 (325)
T d1pgua1         160 QRINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDS--------------------G  218 (325)
T ss_dssp             SCEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTT--------------------C
T ss_pred             ccccccccccccc-ceEEEeecccccccccccccccceecccccCCCCccEEeeecccc--------------------c
Confidence            9999999977643 468899999999999988755444332   233445555555543                    3


Q ss_pred             CEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEc---cCCCEEEEEeCCCcEEEEEccCCchhhh
Q 001295          579 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN---KDGCLLAVSTNDNGIKILATSDGIRLLR  647 (1106)
Q Consensus       579 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s---~~~~~l~~~~~dg~i~iwd~~~~~~~~~  647 (1106)
                      .++++++.|+.|++||+.+++.+..+..|..  .+.++.|+   ++|++|++++.|+.|+|||+.++ +.++
T Consensus       219 ~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~--~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~-~~~~  287 (325)
T d1pgua1         219 EFVITVGSDRKISCFDGKSGEFLKYIEDDQE--PVQGGIFALSWLDSQKFATVGADATIRVWDVTTS-KCVQ  287 (325)
T ss_dssp             CEEEEEETTCCEEEEETTTCCEEEECCBTTB--CCCSCEEEEEESSSSEEEEEETTSEEEEEETTTT-EEEE
T ss_pred             eeccccccccceeeeeecccccccccccccc--ccccceeeeeccCCCEEEEEeCCCeEEEEECCCC-CEEE
Confidence            5789999999999999999999999986643  56666666   68999999999999999999887 4433

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=5.1e-28  Score=259.84  Aligned_cols=269  Identities=19%  Similarity=0.267  Sum_probs=209.6

Q ss_pred             eeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEE
Q 001295          449 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIK  528 (1106)
Q Consensus       449 ~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~  528 (1106)
                      .+.++.||..+|++++|+|      |+||+.||+|++||+.++     ..+|...|.++.+.+.   ..+++++.|++++
T Consensus         5 ~i~~l~gH~~~I~~l~~s~------l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~---~~~~s~s~D~~v~   70 (287)
T d1pgua2           5 VLKTISGHNKGITALTVNP------LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA---QEYSSISWDDTLK   70 (287)
T ss_dssp             EEEEECCCSSCEEEEETTT------TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCST---TCCEEEETTTEEE
T ss_pred             eeEEECCCCCceEEEEECc------EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCC---CeEEEEeeccccc
Confidence            3447999999999999976      799999999999998764     3589999999997543   4689999999999


Q ss_pred             EEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCC
Q 001295          529 AWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG  608 (1106)
Q Consensus       529 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  608 (1106)
                      +|++....       ....+..+++.+++.                      ++..+.++.+.+|+..+++.+..+... 
T Consensus        71 ~w~~~~~~-------~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-  120 (287)
T d1pgua2          71 VNGITKHE-------FGSQPKVASANNDGF----------------------TAVLTNDDDLLILQSFTGDIIKSVRLN-  120 (287)
T ss_dssp             ETTEEEEE-------CSSCEEEEEECSSSE----------------------EEEEETTSEEEEEETTTCCEEEEEECS-
T ss_pred             cccccccc-------cccceeeeeeccCCc----------------------eEEEeecccceeeeccceeeeeecccc-
Confidence            99875311       122344445555443                      455566778999999999988887644 


Q ss_pred             CCCCcCeEEEccCCCEEEEEeCCC-cEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhccccccccc
Q 001295          609 GLPASPRIRFNKDGCLLAVSTNDN-GIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA  687 (1106)
Q Consensus       609 ~~~~v~~v~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  687 (1106)
                          ....++++++..+++++.++ .+++|++.+.....                                         
T Consensus       121 ----~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~-----------------------------------------  155 (287)
T d1pgua2         121 ----SPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSF-----------------------------------------  155 (287)
T ss_dssp             ----SCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEE-----------------------------------------
T ss_pred             ----ceeeeeeccCcceeeeccccceeeeeeccccceee-----------------------------------------
Confidence                23467888888888888765 68899864320000                                         


Q ss_pred             ccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceE
Q 001295          688 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH  767 (1106)
Q Consensus       688 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  767 (1106)
                                                                                                      
T Consensus       156 --------------------------------------------------------------------------------  155 (287)
T d1pgua2         156 --------------------------------------------------------------------------------  155 (287)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceee-
Q 001295          768 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMA-  845 (1106)
Q Consensus       768 ~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~-  845 (1106)
                         .+                               .  ..+...+++++|+|++++|++|+ ||.|++||+.+++... 
T Consensus       156 ---~~-------------------------------~--~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~  199 (287)
T d1pgua2         156 ---DL-------------------------------K--TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTS  199 (287)
T ss_dssp             ---EC-------------------------------S--SCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEC
T ss_pred             ---ee-------------------------------e--eccCCceeEEEeccCccccccccccccccceeecccccccc
Confidence               00                               0  01556788899999999999988 8999999998877654 


Q ss_pred             eecCCCCCeeEEEEecC---------CCceEEEeeCCCcEEEEEeec-ceEEEEecCcccCeeEEEEecCCCEEEEEcCC
Q 001295          846 TFMPPPPAATFLAFHPQ---------DNNIIAIGMDDSSIQIYNVRV-DEVKSKLKGHSKRITGLAFSHALNVLVSSGAD  915 (1106)
Q Consensus       846 ~~~~~~~~v~~l~~s~~---------d~~~la~g~~dg~v~iwd~~~-~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D  915 (1106)
                      .+.+|...|.+++|+|.         ++.+||+|+.|++|+|||+.+ ++.+..+.+|...|++++|+|++ .|++++.|
T Consensus       200 ~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D  278 (287)
T d1pgua2         200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGAD  278 (287)
T ss_dssp             CSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETT
T ss_pred             cccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECC
Confidence            46789999999999872         356899999999999999976 66778889999999999999986 68999999


Q ss_pred             CcEEEEeC
Q 001295          916 SQLCVWSS  923 (1106)
Q Consensus       916 g~i~vwd~  923 (1106)
                      ++|++|++
T Consensus       279 ~~v~iW~i  286 (287)
T d1pgua2         279 ACIKRWNV  286 (287)
T ss_dssp             SCEEEEEE
T ss_pred             CeEEEEEE
Confidence            99999986

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.4e-27  Score=267.09  Aligned_cols=289  Identities=16%  Similarity=0.208  Sum_probs=195.4

Q ss_pred             eeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCce------eEEEeccCCCeEEEec-----cccCCceEEE
Q 001295          451 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK------QYIFEGHEAPVYSVCP-----HHKENIQFIF  519 (1106)
Q Consensus       451 ~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~------~~~~~~h~~~v~~~~~-----~~~~~~~~l~  519 (1106)
                      ...++|.+.|.++++++  +  +++|++.|++|+|||..+...      ......|...+..+..     ....++.+++
T Consensus         8 ~~~~~H~~~I~~v~~~~--~--~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACN--S--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA   83 (393)
T ss_dssp             EESSCSSSCEEEEEECS--S--EEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             ecCCcccCccEEEEEeC--C--EEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEE
Confidence            35679999999999875  4  799999999999999776432      2233345444332221     1122335788


Q ss_pred             EEecCCeEEEEeCCCCCceeEeeC----------CCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCe
Q 001295          520 STALDGKIKAWLYDNLGSRVDYEA----------PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS  589 (1106)
Q Consensus       520 s~~~dg~i~iwd~~~~~~~~~~~~----------~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  589 (1106)
                      +++.||.|++|++...........          +...+..+++.+++.                .+.+.++++++.||.
T Consensus        84 s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~dg~  147 (393)
T d1sq9a_          84 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASND----------------RLLSHRLVATDVKGT  147 (393)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC--------------------CEEEEEEETTSC
T ss_pred             EEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCC----------------cccccEEEEEcCCCc
Confidence            999999999998765433221110          111233333333321                112357889999999


Q ss_pred             EEEEECCCcc---------------eeEEE-ccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccc
Q 001295          590 IKFWDMDSVQ---------------LLTSI-DADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA  653 (1106)
Q Consensus       590 i~iwd~~~~~---------------~~~~~-~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  653 (1106)
                      +++|++....               ..... ........+.+++|+|++ +|++|+.||+|++||+.++. .+..+....
T Consensus       148 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~-~~~~~~~~~  225 (393)
T d1sq9a_         148 TYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLR-PLYNFESQH  225 (393)
T ss_dssp             EEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTE-EEEEEECCC
T ss_pred             EEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccc-ccccccccc
Confidence            9999974321               11111 112233468899999998 88999999999999987762 111110000


Q ss_pred             cccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccce
Q 001295          654 YDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCR  733 (1106)
Q Consensus       654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~  733 (1106)
                                                                                                      
T Consensus       226 --------------------------------------------------------------------------------  225 (393)
T d1sq9a_         226 --------------------------------------------------------------------------------  225 (393)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCe
Q 001295          734 SLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAV  813 (1106)
Q Consensus       734 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v  813 (1106)
                                                                                           .+  .+|...|
T Consensus       226 ---------------------------------------------------------------------~l--~~h~~~V  234 (393)
T d1sq9a_         226 ---------------------------------------------------------------------SM--INNSNSI  234 (393)
T ss_dssp             --------------------------------------------------------------------------CCCCCE
T ss_pred             ---------------------------------------------------------------------cc--ccccceE
Confidence                                                                                 00  0156666


Q ss_pred             eEEEEecCCCEEEEEe-CC---eEEEEEcCCCceeeee-------------cCCCCCeeEEEEecCCCceEEEeeCCCcE
Q 001295          814 PCFALSKNDSYVMSAS-GG---KISLFNMMTFKTMATF-------------MPPPPAATFLAFHPQDNNIIAIGMDDSSI  876 (1106)
Q Consensus       814 ~~l~~s~~~~~l~~~s-dg---~i~vwd~~~~~~~~~~-------------~~~~~~v~~l~~s~~d~~~la~g~~dg~v  876 (1106)
                      .+++|+|||++|++|+ |+   .|++||+++++.+..+             .+|...|++++|+| ++++|++|+.|++|
T Consensus       235 ~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fsp-d~~~l~S~s~D~~v  313 (393)
T d1sq9a_         235 RSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKL  313 (393)
T ss_dssp             EEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEE
T ss_pred             EEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCC-CCCeeEEECCCCEE
Confidence            6666666666666666 43   3667777666655554             47999999999999 89999999999999


Q ss_pred             EEEEeecceEEEEecCcccCee----EEEEecCCCEEEEEc
Q 001295          877 QIYNVRVDEVKSKLKGHSKRIT----GLAFSHALNVLVSSG  913 (1106)
Q Consensus       877 ~iwd~~~~~~~~~l~~h~~~V~----~l~~s~d~~~l~s~s  913 (1106)
                      +|||+.+++++.++++|.+.|.    .++|++++..+++++
T Consensus       314 ~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~  354 (393)
T d1sq9a_         314 RFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG  354 (393)
T ss_dssp             EEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred             EEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcc
Confidence            9999999999999999998886    588999999887665

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.6e-27  Score=262.50  Aligned_cols=328  Identities=13%  Similarity=0.088  Sum_probs=229.1

Q ss_pred             ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEE
Q 001295          407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  486 (1106)
Q Consensus       407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw  486 (1106)
                      +..+|++.|++|+|||++++||+|+.||+|+|||+.++..........+|.++|.+++|+|++.. +|++|+.|++|++|
T Consensus         6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~-~l~sg~~d~~v~~w   84 (342)
T d1yfqa_           6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKV   84 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEE
T ss_pred             cCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCC-EEEEcccccceeee
Confidence            57899999999999999999999999999999999887655444445579999999999998665 79999999999999


Q ss_pred             eCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeec
Q 001295          487 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  566 (1106)
Q Consensus       487 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  566 (1106)
                      ++..+........+...+....+... +...+++++.|+.+++||++.............         ..      ...
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~---------~~------~~~  148 (342)
T d1yfqa_          85 DLIGSPSFQALTNNEANLGICRICKY-GDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLN---------SN------NTK  148 (342)
T ss_dssp             CSSSSSSEEECBSCCCCSCEEEEEEE-TTTEEEEEETTSEEEEECHHHHTTBCEEEEESC---------SS------SSS
T ss_pred             eccccccccccccccccccccccccc-ccccccccccccccceeeccccccceeeecccc---------cc------ccc
Confidence            99988887777666555444333222 336899999999999999875443322211100         00      001


Q ss_pred             cceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEcc-CCCCCCcCeEEEc-cCCCEEEEEeCCCcEEEEEccCCch
Q 001295          567 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA-DGGLPASPRIRFN-KDGCLLAVSTNDNGIKILATSDGIR  644 (1106)
Q Consensus       567 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~s-~~~~~l~~~~~dg~i~iwd~~~~~~  644 (1106)
                      .......+.+.++.+++++.|+.|++|++...+....... ......+.+..+. .++..+++++.||.+.+|+......
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~  228 (342)
T d1yfqa_         149 VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGD  228 (342)
T ss_dssp             SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCC
T ss_pred             ceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcc
Confidence            1223345556666899999999999999987664332211 1112234444544 4788999999999999998765411


Q ss_pred             hhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecC
Q 001295          645 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT  724 (1106)
Q Consensus       645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~  724 (1106)
                      .......                                                                         
T Consensus       229 ~~~~~~~-------------------------------------------------------------------------  235 (342)
T d1yfqa_         229 DYNSSKR-------------------------------------------------------------------------  235 (342)
T ss_dssp             STTCTTC-------------------------------------------------------------------------
T ss_pred             eeecccc-------------------------------------------------------------------------
Confidence            1000000                                                                         


Q ss_pred             CCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCcccccc
Q 001295          725 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV  804 (1106)
Q Consensus       725 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  804 (1106)
                                            .                  ....+..                              ..
T Consensus       236 ----------------------~------------------~~~~~~~------------------------------~~  245 (342)
T d1yfqa_         236 ----------------------F------------------AFRCHRL------------------------------NL  245 (342)
T ss_dssp             ----------------------E------------------EEECCCC------------------------------CT
T ss_pred             ----------------------c------------------eeeeeee------------------------------cc
Confidence                                  0                  0000000                              00


Q ss_pred             CCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeec
Q 001295          805 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV  883 (1106)
Q Consensus       805 ~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~  883 (1106)
                      ....|...+.+++|+|++++|++|+ ||.|++||+.+++.+.++..+ ..+..++|+| ++++||+|+.|+.+++|....
T Consensus       246 ~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~-~~~~l~~a~sdd~~~~~~~~~  323 (342)
T d1yfqa_         246 KDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIAC-SDNILCLATSDDTFKTNAAID  323 (342)
T ss_dssp             TCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEE-CSSEEEEEEECTHHHHCSSSC
T ss_pred             CCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC-CCCEEEEEEe-CCCEEEEEEcCCcEEEeeeeC
Confidence            0012777899999999999999999 899999999999998887643 3566788899 889999999999888875432


Q ss_pred             ceEEEEecCcccCeeEE
Q 001295          884 DEVKSKLKGHSKRITGL  900 (1106)
Q Consensus       884 ~~~~~~l~~h~~~V~~l  900 (1106)
                          ..+..|...|..+
T Consensus       324 ----~~~~~~~~~i~~~  336 (342)
T d1yfqa_         324 ----QTIELNASSIYII  336 (342)
T ss_dssp             ----TTSCCCCCEEEEE
T ss_pred             ----CCccCCCCeEEEE
Confidence                2345566666543

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.1e-26  Score=246.06  Aligned_cols=277  Identities=21%  Similarity=0.309  Sum_probs=207.8

Q ss_pred             eeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeE
Q 001295          448 RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKI  527 (1106)
Q Consensus       448 ~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i  527 (1106)
                      +.+..+.+|...|+|++|  |++  +|+||+.||+|+|||+.++++++++.+|.+.|.+++|    ++++|++|+.|+.|
T Consensus         6 ~~i~~~~~~~~~V~c~~~--d~~--~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~----~~~~l~s~s~D~~i   77 (293)
T d1p22a2           6 QRIHCRSETSKGVYCLQY--DDQ--KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY----DERVIITGSSDSTV   77 (293)
T ss_dssp             CCEECCCSSCCCEEEEEC--CSS--EEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC----CSSEEEEEETTSCE
T ss_pred             EEEeccCCCCCCEEEEEE--cCC--EEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec----ccceeecccccccc
Confidence            334456678889998765  677  8999999999999999999999999999999999986    33689999999999


Q ss_pred             EEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEc-c
Q 001295          528 KAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID-A  606 (1106)
Q Consensus       528 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~  606 (1106)
                      ++|++................                       ....+....++++..++.+++|+..+........ .
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (293)
T d1p22a2          78 RVWDVNTGEMLNTLIHHCEAV-----------------------LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVL  134 (293)
T ss_dssp             EEEESSSCCEEEEECCCCSCE-----------------------EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEE
T ss_pred             ccccccccccccccccccccc-----------------------ccccccccceeecccccceeEeeccccccccccccc
Confidence            999998876555444332221                       2223334468999999999999998765433221 2


Q ss_pred             CCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccc
Q 001295          607 DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADR  686 (1106)
Q Consensus       607 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  686 (1106)
                      ..+...+..+.+  ....+++++.|+.+++||..++ +.+..+.                                    
T Consensus       135 ~~~~~~v~~~~~--~~~~~~~~s~d~~i~~~d~~~~-~~~~~~~------------------------------------  175 (293)
T d1p22a2         135 VGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTC-EFVRTLN------------------------------------  175 (293)
T ss_dssp             CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTC-CEEEEEE------------------------------------
T ss_pred             ccccccccccee--cccccccccCCCceeeecCCCC-cEEEEEc------------------------------------
Confidence            222334444444  4567788888889999887655 1110000                                    


Q ss_pred             cccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCce
Q 001295          687 AASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAI  766 (1106)
Q Consensus       687 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~  766 (1106)
                                                                                                      
T Consensus       176 --------------------------------------------------------------------------------  175 (293)
T d1p22a2         176 --------------------------------------------------------------------------------  175 (293)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceee
Q 001295          767 HLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMA  845 (1106)
Q Consensus       767 i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~  845 (1106)
                                                               ++...+..+.+  ++.++++++ ||.|++||+.+...+.
T Consensus       176 -----------------------------------------~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~  212 (293)
T d1p22a2         176 -----------------------------------------GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLR  212 (293)
T ss_dssp             -----------------------------------------CCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEE
T ss_pred             -----------------------------------------ccccccccccC--CCCeEEEecCCCEEEEEecccceeee
Confidence                                                     02333444444  456788877 8999999999999999


Q ss_pred             eecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeec---------ceEEEEecCcccCeeEEEEecCCCEEEEEcCCC
Q 001295          846 TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---------DEVKSKLKGHSKRITGLAFSHALNVLVSSGADS  916 (1106)
Q Consensus       846 ~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~---------~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg  916 (1106)
                      .+.++...+..  +++ ++.+|++|+.||.|++||+.+         ..++..+.+|.+.|++|+|  |+.+|+|+|.||
T Consensus       213 ~~~~~~~~v~~--~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg  287 (293)
T d1p22a2         213 VLEGHEELVRC--IRF-DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDD  287 (293)
T ss_dssp             EECCCSSCEEE--EEC-CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSS
T ss_pred             eecccceeeee--ccc-cceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCC
Confidence            88888887765  455 678999999999999999864         2467889999999999999  567899999999


Q ss_pred             cEEEEe
Q 001295          917 QLCVWS  922 (1106)
Q Consensus       917 ~i~vwd  922 (1106)
                      +|+|||
T Consensus       288 ~i~iWD  293 (293)
T d1p22a2         288 TILIWD  293 (293)
T ss_dssp             EEEEEC
T ss_pred             EEEEeC
Confidence            999997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=2.7e-27  Score=266.63  Aligned_cols=348  Identities=10%  Similarity=0.091  Sum_probs=228.0

Q ss_pred             ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCcee---eeeeeeccccCCeeEEEE------cCCCCceEEEEe
Q 001295          407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEV---RQHLEIDAHVGGVNDIAF------SHPNKQLCVITC  477 (1106)
Q Consensus       407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~---~~~~~l~~h~~~V~~~~~------s~d~~~~~l~s~  477 (1106)
                      ...+|.+.|.++++++  ++|+++|.|++|+|||..+.+..   ........|...+..+.+      +.... .+++++
T Consensus         9 ~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~   85 (393)
T d1sq9a_           9 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFEL-CLVATT   85 (393)
T ss_dssp             ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEE-EEEEEE
T ss_pred             cCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCC-cEEEEE
Confidence            4689999999999874  69999999999999998765431   111122344444433322      22222 268899


Q ss_pred             cCCCcEEEEeCCCCceeEEE----------eccCCCeEEEeccccC---CceEEEEEecCCeEEEEeCCCCCcee-EeeC
Q 001295          478 GDDKTIKVWDATNGAKQYIF----------EGHEAPVYSVCPHHKE---NIQFIFSTALDGKIKAWLYDNLGSRV-DYEA  543 (1106)
Q Consensus       478 ~~d~~i~iwd~~~~~~~~~~----------~~h~~~v~~~~~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~  543 (1106)
                      +.||.|++|++........+          ..+...+..+++.+..   .+.++++++.||.+++|++....... ....
T Consensus        86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~  165 (393)
T d1sq9a_          86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL  165 (393)
T ss_dssp             ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred             eCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence            99999999997654332211          1244556777765543   24789999999999999986433211 1111


Q ss_pred             CCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccC----CCCCCcCeEEEc
Q 001295          544 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD----GGLPASPRIRFN  619 (1106)
Q Consensus       544 ~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----~~~~~v~~v~~s  619 (1106)
                      +......+......    .......+.+++|+|++ +|++|+.|+.|++||+.+++.+..+...    +|...|.+++|+
T Consensus       166 ~~~~~~~~~~~~~~----~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  240 (393)
T d1sq9a_         166 NWSPTLELQGTVES----PMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS  240 (393)
T ss_dssp             CCCCEEEEEEEECC----SSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred             eeccceecccceec----ccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccc
Confidence            11111111110000    00112246677788876 7899999999999999999988776532    356689999999


Q ss_pred             cCCCEEEEEeCCCc---EEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCC
Q 001295          620 KDGCLLAVSTNDNG---IKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGM  696 (1106)
Q Consensus       620 ~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  696 (1106)
                      |||++|++|+.|++   |++||+.++ ..+..+.....                                          
T Consensus       241 pdg~~l~sgs~D~t~~~i~lwd~~~g-~~~~~l~~~~~------------------------------------------  277 (393)
T d1sq9a_         241 PQGSLLAIAHDSNSFGCITLYETEFG-ERIGSLSVPTH------------------------------------------  277 (393)
T ss_dssp             SSTTEEEEEEEETTEEEEEEEETTTC-CEEEEECBC--------------------------------------------
T ss_pred             cccceeeeecCCCCcceeeecccccc-eeeeeeccccc------------------------------------------
Confidence            99999999999875   899998776 22221110000                                          


Q ss_pred             CCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccc
Q 001295          697 NGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTE  776 (1106)
Q Consensus       697 ~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  776 (1106)
                                                                               ..                     
T Consensus       278 ---------------------------------------------------------~~---------------------  279 (393)
T d1sq9a_         278 ---------------------------------------------------------SS---------------------  279 (393)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ---------------------------------------------------------cc---------------------
Confidence                                                                     00                     


Q ss_pred             cCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCee
Q 001295          777 RNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAAT  855 (1106)
Q Consensus       777 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~  855 (1106)
                                            .....+.  +|...|++++|+||+++|++++ |++|+|||+++++++.++.+|...|.
T Consensus       280 ----------------------~~~~~~~--gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~  335 (393)
T d1sq9a_         280 ----------------------QASLGEF--AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIE  335 (393)
T ss_dssp             --------------------------CCB--SBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCS
T ss_pred             ----------------------cceeeee--cccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCccc
Confidence                                  0000011  3899999999999999999999 99999999999999999999988775


Q ss_pred             ----EEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeC
Q 001295          856 ----FLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS  923 (1106)
Q Consensus       856 ----~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~  923 (1106)
                          .++|++ ++..+++++   ...++.+..+.        ....    .......|++++.|+.|++|.-
T Consensus       336 ~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~--------~~~~----~~~~~~~~~~~~~d~~ir~~~~  391 (393)
T d1sq9a_         336 IEEDILAVDE-HGDSLAEPG---VFDVKFLKKGW--------RSGM----GADLNESLCCVCLDRSIRWFRE  391 (393)
T ss_dssp             SGGGCCCBCT-TSCBCSSCC---EEEEEEECTTT--------SBST----TCTTSCEEEEEETTTEEEEEEE
T ss_pred             CCccEEEECC-CCCEEEEcc---cceEEECccCc--------eecc----ccCCCCEEEEEEcCCeEEEEeC
Confidence                588999 777776543   22222222211        1100    0123457899999999999963

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=8e-27  Score=250.35  Aligned_cols=276  Identities=10%  Similarity=0.066  Sum_probs=205.9

Q ss_pred             ccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEE
Q 001295          407 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  486 (1106)
Q Consensus       407 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw  486 (1106)
                      ++.||..+|++++|+|    |++|+.||+|++||+.++        ..+|...|.+++|++++.   +++++.|++|++|
T Consensus         8 ~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~--------~~~h~~~V~~~~~~~~~~---~~s~s~D~~v~~w   72 (287)
T d1pgua2           8 TISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM--------HQDHSNLIVSLDNSKAQE---YSSISWDDTLKVN   72 (287)
T ss_dssp             EECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE--------ECCCCSCEEEEECCSTTC---CEEEETTTEEEET
T ss_pred             EECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC--------CCCCCCCEEEEEecCCCe---EEEEeeccccccc
Confidence            5899999999999997    999999999999998763        357999999999997664   7999999999999


Q ss_pred             eCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeec
Q 001295          487 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  566 (1106)
Q Consensus       487 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  566 (1106)
                      ++.+.+       ....+..+++.  +++. ++..+.++.+.+|+..+......+.....                    
T Consensus        73 ~~~~~~-------~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------  122 (287)
T d1pgua2          73 GITKHE-------FGSQPKVASAN--NDGF-TAVLTNDDDLLILQSFTGDIIKSVRLNSP--------------------  122 (287)
T ss_dssp             TEEEEE-------CSSCEEEEEEC--SSSE-EEEEETTSEEEEEETTTCCEEEEEECSSC--------------------
T ss_pred             cccccc-------cccceeeeeec--cCCc-eEEEeecccceeeeccceeeeeeccccce--------------------
Confidence            965422       23455666654  3434 44455677788998887665554443221                    


Q ss_pred             cceeEEEEcCCCCEEEEEECC-CeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchh
Q 001295          567 RSLGVVQFDTTKNRFLAAGDD-FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL  645 (1106)
Q Consensus       567 ~~i~~~~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  645 (1106)
                          ..+++++++.+++++.+ +.|++|++...+....+.. .+...+.+++|+|++.+|++|+.||.|++||+.++...
T Consensus       123 ----~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~  197 (287)
T d1pgua2         123 ----GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKT-PLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVK  197 (287)
T ss_dssp             ----EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSS-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             ----eeeeeccCcceeeeccccceeeeeeccccceeeeeee-ccCCceeEEEeccCccccccccccccccceeecccccc
Confidence                12334444567777766 5799999987666555543 22346899999999999999999999999998766211


Q ss_pred             hhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCC
Q 001295          646 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE  725 (1106)
Q Consensus       646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~  725 (1106)
                      ...+                                                                            
T Consensus       198 ~~~~----------------------------------------------------------------------------  201 (287)
T d1pgua2         198 TSRW----------------------------------------------------------------------------  201 (287)
T ss_dssp             ECCS----------------------------------------------------------------------------
T ss_pred             cccc----------------------------------------------------------------------------
Confidence            1000                                                                            


Q ss_pred             CCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccC
Q 001295          726 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT  805 (1106)
Q Consensus       726 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  805 (1106)
                                    .+|...|.+++|+|++...                                               
T Consensus       202 --------------~~h~~~v~~~~~~p~~~~~-----------------------------------------------  220 (287)
T d1pgua2         202 --------------AFRTSKINAISWKPAEKGA-----------------------------------------------  220 (287)
T ss_dssp             --------------CCCSSCEEEEEECCCC--------------------------------------------------
T ss_pred             --------------cccccccceeeeccccccc-----------------------------------------------
Confidence                          1267788999998877522                                               


Q ss_pred             CCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCC-CceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEe
Q 001295          806 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT-FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV  881 (1106)
Q Consensus       806 ~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~-~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~  881 (1106)
                                ..+.+++.++++|+ |++|++||+.+ .+.+..+.+|...|++++|+| ++ .|++++.||.|++|++
T Consensus       221 ----------~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~-~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         221 ----------NEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             -------------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEE-TT-EEEEEETTSCEEEEEE
T ss_pred             ----------ccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECC-CC-EEEEEECCCeEEEEEE
Confidence                      22345778999999 99999999976 556777889999999999999 66 5788999999999996

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=6.4e-27  Score=266.28  Aligned_cols=364  Identities=9%  Similarity=0.006  Sum_probs=246.8

Q ss_pred             EEecCCCe-EEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeCCCe
Q 001295          357 DFHPVQQT-LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI  435 (1106)
Q Consensus       357 ~~sp~g~~-llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~  435 (1106)
                      .++.|.+. ++++.+.||+|+|||+.+++.+.+                   +..| ..+..++|||||++|++++.|++
T Consensus        25 ~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~-------------------l~~g-~~~~~vafSPDGk~l~~~~~d~~   84 (426)
T d1hzua2          25 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKV-------------------IDTG-YAVHISRMSASGRYLLVIGRDAR   84 (426)
T ss_dssp             CSCCCGGGEEEEEETTTTEEEEEETTTCSEEEE-------------------EECC-SSEEEEEECTTSCEEEEEETTSE
T ss_pred             cccCCCCeEEEEEEcCCCEEEEEECCCCcEEEE-------------------EeCC-CCeeEEEECCCCCEEEEEeCCCC
Confidence            35555443 357788899999999999998874                   4444 36899999999999999999999


Q ss_pred             EEEEEccCCceee--eeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccC
Q 001295          436 VQIYSYHGGDEVR--QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE  513 (1106)
Q Consensus       436 v~iwd~~~~~~~~--~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~  513 (1106)
                      |++||+.+++...  .+....+|.+.+.+++|+|||+. +++++..++.+++||..++.++..+.+|...+..+.+.+.+
T Consensus        85 v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~-l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (426)
T d1hzua2          85 IDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRY-TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEP  163 (426)
T ss_dssp             EEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCC
T ss_pred             EEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCE-EEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCC
Confidence            9999999887432  23334578888899999999995 45677789999999999999999999888777666665444


Q ss_pred             CceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEE-CCCeEEE
Q 001295          514 NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIKF  592 (1106)
Q Consensus       514 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i  592 (1106)
                      . ...+..+.|+...+|.......+............+...+.+.         .+..+.++|++++++++. .+..+.+
T Consensus       164 ~-~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~g~~~~~a~~~~~~~~~  233 (426)
T d1hzua2         164 R-VAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAP---------FLADGGWDSSHRYFMTAANNSNKVAV  233 (426)
T ss_dssp             C-EEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCS---------SEEEEEECTTSCEEEEEETTCSEEEE
T ss_pred             c-eeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCC---------ccEeeeECCCCcEEEeeeecccceee
Confidence            3 3555666677666665554443333333322222222223333         566778888888877765 6678999


Q ss_pred             EECCCcceeEEEccCCCCCCcCeEEEccCCCEEE---EEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCc
Q 001295          593 WDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA---VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISP  669 (1106)
Q Consensus       593 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~---~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  669 (1106)
                      |+..+++.+................+..++...+   ..+.|+.+.+|+......                         
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~-------------------------  288 (426)
T d1hzua2         234 IDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNH-------------------------  288 (426)
T ss_dssp             EETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTC-------------------------
T ss_pred             eecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeecccccc-------------------------
Confidence            9999999888876554433444444444332211   122345555554332200                         


Q ss_pred             hhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEE
Q 001295          670 ISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRL  749 (1106)
Q Consensus       670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~  749 (1106)
                                                                                                      
T Consensus       289 --------------------------------------------------------------------------------  288 (426)
T d1hzua2         289 --------------------------------------------------------------------------------  288 (426)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEE--
Q 001295          750 IFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMS--  827 (1106)
Q Consensus       750 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~--  827 (1106)
                                                                 ....+.... .+.+  |...+..++|+||+++|++  
T Consensus       289 -------------------------------------------~~~~~~~~~-~l~g--~~~~v~~v~~sPdg~~l~v~~  322 (426)
T d1hzua2         289 -------------------------------------------PQYAWKKVA-ELQG--QGGGSLFIKTHPKSSHLYVDT  322 (426)
T ss_dssp             -------------------------------------------TTTBTSEEE-EEEC--SSSCCCCEECCTTCSEEEECC
T ss_pred             -------------------------------------------ccccceEeE-EEec--CCCceeEEEcCCCCceEEEee
Confidence                                                       000000000 0111  6667777888888888885  


Q ss_pred             -----Ee-CCeEEEEEcCCCceeeee---------cCCCCCeeEEEEecCCCceEE-Ee----eCCCcEEEEEeecceEE
Q 001295          828 -----AS-GGKISLFNMMTFKTMATF---------MPPPPAATFLAFHPQDNNIIA-IG----MDDSSIQIYNVRVDEVK  887 (1106)
Q Consensus       828 -----~s-dg~i~vwd~~~~~~~~~~---------~~~~~~v~~l~~s~~d~~~la-~g----~~dg~v~iwd~~~~~~~  887 (1106)
                           ++ +++|+|||+.+++...++         ..+...|.+++||| ||++++ ++    +.+|.|+|||..++++.
T Consensus       323 ~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSp-DGk~i~vs~~~~~~~~~~i~v~D~~T~k~~  401 (426)
T d1hzua2         323 TFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNGKNDSSALVVVDDKTLKLK  401 (426)
T ss_dssp             TTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECS-SSSEEEEEECCCTTSCCEEEEEETTTTEEE
T ss_pred             cCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECC-CCCEEEEEEecCCCCCCeEEEEECCCCeEE
Confidence                 33 689999999998876554         24566799999999 787653 32    46889999999999999


Q ss_pred             EEecCcccCeeEEEEecCCCEE
Q 001295          888 SKLKGHSKRITGLAFSHALNVL  909 (1106)
Q Consensus       888 ~~l~~h~~~V~~l~~s~d~~~l  909 (1106)
                      ..+.++.      .++|+|++-
T Consensus       402 ~~i~~~~------~~tp~Gk~~  417 (426)
T d1hzua2         402 AVVKDPR------LITPTGKFN  417 (426)
T ss_dssp             EEECCTT------CCSEEEEEE
T ss_pred             EEECCCC------ccCCCceEe
Confidence            9998774      335777664

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.5e-25  Score=240.58  Aligned_cols=233  Identities=18%  Similarity=0.299  Sum_probs=185.6

Q ss_pred             cCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEE
Q 001295          348 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF  427 (1106)
Q Consensus       348 ~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l  427 (1106)
                      .|...|+|++  +||++ ||||+.||+|+|||+.+++.+..                   +.+|.+.|.+++|  ++++|
T Consensus        13 ~~~~~V~c~~--~d~~~-l~sgs~Dg~i~vWd~~~~~~~~~-------------------l~~H~~~V~~v~~--~~~~l   68 (293)
T d1p22a2          13 ETSKGVYCLQ--YDDQK-IVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY--DERVI   68 (293)
T ss_dssp             SSCCCEEEEE--CCSSE-EEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--CSSEE
T ss_pred             CCCCCEEEEE--EcCCE-EEEEeCCCeEEEEECCCCcEEEE-------------------EecCCCCEeeeec--cccee
Confidence            4889999975  57884 99999999999999999988763                   7899999999887  68899


Q ss_pred             EEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCce---eEEEeccCCCe
Q 001295          428 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK---QYIFEGHEAPV  504 (1106)
Q Consensus       428 as~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~h~~~v  504 (1106)
                      ++|+.|+.|++|++..+.....   ...+..  ....+.+...  .++++..++.+++||..+...   ...+..|...+
T Consensus        69 ~s~s~D~~i~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  141 (293)
T d1p22a2          69 ITGSSDSTVRVWDVNTGEMLNT---LIHHCE--AVLHLRFNNG--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV  141 (293)
T ss_dssp             EEEETTSCEEEEESSSCCEEEE---ECCCCS--CEEEEECCTT--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCE
T ss_pred             eccccccccccccccccccccc---cccccc--cccccccccc--ceeecccccceeEeecccccccccccccccccccc
Confidence            9999999999999998875542   222222  3334445555  689999999999999887654   44567788888


Q ss_pred             EEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEE
Q 001295          505 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  584 (1106)
Q Consensus       505 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  584 (1106)
                      ..+.+.  .  ..+++++.|+.|++||+++.+....+..+...+..+.++                       +.+++++
T Consensus       142 ~~~~~~--~--~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~-----------------------~~~l~~~  194 (293)
T d1p22a2         142 NVVDFD--D--KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR-----------------------DRLVVSG  194 (293)
T ss_dssp             EEEEEE--T--TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE-----------------------TTEEEEE
T ss_pred             ccceec--c--cccccccCCCceeeecCCCCcEEEEEcccccccccccCC-----------------------CCeEEEe
Confidence            887753  2  468899999999999999888777777766665555443                       2369999


Q ss_pred             ECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295          585 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       585 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                      +.|+.|++||+.+.+.+..+..+..  .+  ..+++++.+|++|+.||.|++||+...
T Consensus       195 ~~dg~i~i~d~~~~~~~~~~~~~~~--~v--~~~~~~~~~l~sg~~dg~i~iwd~~~~  248 (293)
T d1p22a2         195 SSDNTIRLWDIECGACLRVLEGHEE--LV--RCIRFDNKRIVSGAYDGKIKVWDLVAA  248 (293)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCCSS--CE--EEEECCSSEEEEEETTSCEEEEEHHHH
T ss_pred             cCCCEEEEEecccceeeeeecccce--ee--eeccccceEEEEEcCCCEEEEEECCCC
Confidence            9999999999999999888876533  34  456778999999999999999998654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.95  E-value=8.8e-26  Score=255.55  Aligned_cols=355  Identities=14%  Similarity=0.101  Sum_probs=249.5

Q ss_pred             EEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeCCCeEEEEEccCC
Q 001295          365 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG  444 (1106)
Q Consensus       365 llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~  444 (1106)
                      ++++.+.||+|.|||..+++.+..                   +..| ..+..++|||||++|++++.|++|.+||+.++
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~-------------------~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~   93 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTV-------------------LDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMK   93 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEE-------------------EECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSS
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEE-------------------EeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCC
Confidence            468889999999999999999875                   3444 36999999999999999999999999999987


Q ss_pred             ce--eeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccC-----------CCeEEEeccc
Q 001295          445 DE--VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE-----------APVYSVCPHH  511 (1106)
Q Consensus       445 ~~--~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~-----------~~v~~~~~~~  511 (1106)
                      +.  ...+....+|.+.+.+.+|+|||+. ++++++.+++|++||..+++++..+..|.           .....+.+++
T Consensus        94 ~~~~~~~i~~~~~~~~~~~s~~~SpDG~~-l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~  172 (432)
T d1qksa2          94 EPTTVAEIKIGSEARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASH  172 (432)
T ss_dssp             SCCEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECS
T ss_pred             CceEEEEEecCCCCCCeEEecccCCCCCE-EEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECC
Confidence            64  2333344577788888899999995 46889999999999999999998887654           3344555544


Q ss_pred             cCCceEEEEEecCCeEEEEeCCCCCceeEee-CCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEE-CCCe
Q 001295          512 KENIQFIFSTALDGKIKAWLYDNLGSRVDYE-APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFS  589 (1106)
Q Consensus       512 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~  589 (1106)
                      +.. .++++...++.|.+||..+.+...... .....+..                     +.++|+|+++++++ .++.
T Consensus       173 dg~-~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~---------------------~~~spdg~~~~va~~~~~~  230 (432)
T d1qksa2         173 YRP-EFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHD---------------------GGLDGSHRYFITAANARNK  230 (432)
T ss_dssp             SSS-EEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEE---------------------EEECTTSCEEEEEEGGGTE
T ss_pred             CCC-EEEEEEccCCeEEEEEccCCCcceEEEEcccCcccc---------------------ceECCCCCEEEEeccccce
Confidence            332 355677778999999987755433222 12233344                     44555555666655 5678


Q ss_pred             EEEEECCCcceeEEEccCC---CCCCcCeEEEccCCCEEEEEe-CCCcEEEEEccCCchhhhhhcccccccccCCCCCCC
Q 001295          590 IKFWDMDSVQLLTSIDADG---GLPASPRIRFNKDGCLLAVST-NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKP  665 (1106)
Q Consensus       590 i~iwd~~~~~~~~~~~~~~---~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  665 (1106)
                      +.++|..+++.+..+....   +........+...+...++.. .++.+.+|+.....                      
T Consensus       231 v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~----------------------  288 (432)
T d1qksa2         231 LVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG----------------------  288 (432)
T ss_dssp             EEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT----------------------
T ss_pred             EEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEeccccccc----------------------
Confidence            9999999988887765332   111222333333344443332 25566666543220                      


Q ss_pred             CcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccc
Q 001295          666 TISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK  745 (1106)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~  745 (1106)
                                                                                             .  ..+...
T Consensus       289 -----------------------------------------------------------------------~--~~~~~~  295 (432)
T d1qksa2         289 -----------------------------------------------------------------------H--PDNAWK  295 (432)
T ss_dssp             -----------------------------------------------------------------------C--TTTBTS
T ss_pred             -----------------------------------------------------------------------c--cccccE
Confidence                                                                                   0  114456


Q ss_pred             eEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEE
Q 001295          746 ISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYV  825 (1106)
Q Consensus       746 i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l  825 (1106)
                      +....+++++..+++++.+...++|......                               .|.....++++ ||++.+
T Consensus       296 v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~-------------------------------~~~~~~~sv~v-pDg~~l  343 (432)
T d1qksa2         296 ILDSFPALGGGSLFIKTHPNSQYLYVDATLN-------------------------------PEAEISGSVAV-FDIKAM  343 (432)
T ss_dssp             EEEEEECSCSCCCCEECCTTCSEEEEECTTC-------------------------------SSHHHHTCEEE-EEGGGC
T ss_pred             EEEEEEcCCCCeEEEEecCCccceeecccCC-------------------------------CCCCeeeEEEE-Eechhh
Confidence            7888999999989999999888888643110                               12222344555 899999


Q ss_pred             EEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEee-----CCCcEEEEEeecceEEEEecCc
Q 001295          826 MSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM-----DDSSIQIYNVRVDEVKSKLKGH  893 (1106)
Q Consensus       826 ~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~-----~dg~v~iwd~~~~~~~~~l~~h  893 (1106)
                      ++++ |+++++|++.++..   +..|...+.+++||| ||++|+++.     .+|.|.|||..++++...+++.
T Consensus       344 a~~s~d~~~k~w~~~~~~~---l~~~~~~v~~~~fS~-DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~  413 (432)
T d1qksa2         344 TGDGSDPEFKTLPIAEWAG---ITEGQPRVVQGEFNK-DGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDE  413 (432)
T ss_dssp             CCSSSCCCEEEECHHHHHT---CCSSCCEEEEEEECT-TSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred             cccccCCceEecccccccc---cCCCCCcEEEeEECC-CCCEEEEEEecCCCCCCcEEEEECCCceEEeEecCC
Confidence            9999 89999999866532   335677899999999 887775543     5789999999999998888763

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=8.2e-27  Score=259.50  Aligned_cols=343  Identities=13%  Similarity=0.067  Sum_probs=230.7

Q ss_pred             EEEEec-CCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeCC
Q 001295          355 SMDFHP-VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR  433 (1106)
Q Consensus       355 ~~~~sp-~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d  433 (1106)
                      .-.||| ||++ +|+++ +|.|.|||+.++..+.                     .+|...|.+++|||||++|++++.+
T Consensus         7 ~~~fSP~dG~~-~a~~~-~g~v~v~d~~~~~~~~---------------------~~~~~~v~~~~~spDg~~l~~~~~~   63 (360)
T d1k32a3           7 AEDFSPLDGDL-IAFVS-RGQAFIQDVSGTYVLK---------------------VPEPLRIRYVRRGGDTKVAFIHGTR   63 (360)
T ss_dssp             EEEEEECGGGC-EEEEE-TTEEEEECTTSSBEEE---------------------CSCCSCEEEEEECSSSEEEEEEEET
T ss_pred             cccccCCCCCE-EEEEE-CCeEEEEECCCCcEEE---------------------ccCCCCEEEEEECCCCCEEEEEEcC
Confidence            467999 9995 77766 5899999998876653                     3689999999999999999987755


Q ss_pred             C--eEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccc
Q 001295          434 H--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHH  511 (1106)
Q Consensus       434 ~--~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~  511 (1106)
                      .  .|++||+.+++..+    +..|...|.+++|+|||+  +|++++.++.+++|++.+++....+..|...+.+++|++
T Consensus        64 ~g~~v~v~d~~~~~~~~----~~~~~~~v~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp  137 (360)
T d1k32a3          64 EGDFLGIYDYRTGKAEK----FEENLGNVFAMGVDRNGK--FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD  137 (360)
T ss_dssp             TEEEEEEEETTTCCEEE----CCCCCCSEEEEEECTTSS--EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT
T ss_pred             CCCEEEEEECCCCcEEE----eeCCCceEEeeeeccccc--ccceeccccccccccccccceeeeeecccccccchhhcc
Confidence            3  79999999987543    778999999999999999  899999999999999999999999999998898888765


Q ss_pred             cCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEE
Q 001295          512 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIK  591 (1106)
Q Consensus       512 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~  591 (1106)
                      +  |++|+.++.++..                                                     .+.+..++.++
T Consensus       138 d--g~~la~~~~~~~~-----------------------------------------------------~~~~~~~~~~~  162 (360)
T d1k32a3         138 N--SRFIAYGFPLKHG-----------------------------------------------------ETDGYVMQAIH  162 (360)
T ss_dssp             T--SCEEEEEEEECSS-----------------------------------------------------TTCSCCEEEEE
T ss_pred             c--eeeeeeecccccc-----------------------------------------------------ceeecccccee
Confidence            4  4666655432211                                                     12234456789


Q ss_pred             EEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchh
Q 001295          592 FWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPIS  671 (1106)
Q Consensus       592 iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  671 (1106)
                      +|++.+++.......   ...+..++|+|||++|++++.++.+.+|+............ ....+         .+... 
T Consensus       163 v~d~~~~~~~~~~~~---~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~-~~~~~---------~~~~~-  228 (360)
T d1k32a3         163 VYDMEGRKIFAATTE---NSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVS-KPFVI---------PLIPG-  228 (360)
T ss_dssp             EEETTTTEEEECSCS---SSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCB-EEEEE---------ESSTT-
T ss_pred             eeccccCceeeeccc---ccccccccccCCCCEEEEEeCCCceEcccccccceeecccc-ceEEE---------ecccC-
Confidence            999988776554432   23577899999999999999999999998754411110000 00000         00000 


Q ss_pred             hhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCC---ceeeEecCCCCCCccceecccCccccccceEE
Q 001295          672 AAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND---KSKVWKLTELSEPNQCRSLRLPENLRATKISR  748 (1106)
Q Consensus       672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~---~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~  748 (1106)
                                              ........+++..+.++..+.   ..++|.+....  .....+.    .+...+..
T Consensus       229 ------------------------~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~  278 (360)
T d1k32a3         229 ------------------------SPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDP--GDYRMII----PLESSILI  278 (360)
T ss_dssp             ------------------------CCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCC--BCEEEEE----ECSSEEEE
T ss_pred             ------------------------ccccceECCCcCcccccceeecccccceeecccCc--CceeEee----ecCCCceE
Confidence                                    000111122222332222211   22344432211  1111111    12333444


Q ss_pred             EEEcC---CCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEE
Q 001295          749 LIFTN---SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYV  825 (1106)
Q Consensus       749 ~~~s~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l  825 (1106)
                      +.+..   .+.+++.++.++.+++||+..                      ++...       +...|.+++|||||++|
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~~----------------------~~~~~-------~~~~v~~~~~SpDG~~l  329 (360)
T d1k32a3         279 YSVPVHGEFAAYYQGAPEKGVLLKYDVKT----------------------RKVTE-------VKNNLTDLRLSADRKTV  329 (360)
T ss_dssp             EECCCCCSHHHHHHCCCCCEEEEEEETTT----------------------CCEEE-------EEEEEEEEEECTTSCEE
T ss_pred             EEEEecCCCeeEEEecCCCCEEEEEECCC----------------------CeEEE-------ecCCcCEEEECCCCCEE
Confidence            44433   344567777788888888653                      22211       45568999999999999


Q ss_pred             EEEe-CCeEEEEEcCCCceeeeecCCCCCe
Q 001295          826 MSAS-GGKISLFNMMTFKTMATFMPPPPAA  854 (1106)
Q Consensus       826 ~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v  854 (1106)
                      ++++ ||.|++||+++++...++..+..++
T Consensus       330 ~~~~~Dg~i~v~d~~~~~~~~~~~~d~~~~  359 (360)
T d1k32a3         330 MVRKDDGKIYTFPLEKPEDERTVETDKRPL  359 (360)
T ss_dssp             EEEETTSCEEEEESSCTTSCEECCCCSSCE
T ss_pred             EEEECCCeEEEEECCCCCcceEEEeccccc
Confidence            9999 8999999999998888776555443

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=8.6e-26  Score=248.49  Aligned_cols=310  Identities=10%  Similarity=-0.002  Sum_probs=215.1

Q ss_pred             eeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeE---EEeccCCCeEEEeccccCCceEEEEEecCCeEE
Q 001295          452 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY---IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIK  528 (1106)
Q Consensus       452 ~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~  528 (1106)
                      ..++|.+.|++|+|+|+++  +|++|+.||+|+|||+.++....   ...+|..+|.+++|++.. +.+|++|+.||.|+
T Consensus         6 ~~~~h~d~I~~l~fsp~~~--~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~-~~~l~sg~~d~~v~   82 (342)
T d1yfqa_           6 IEQAPKDYISDIKIIPSKS--LLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT-DLQIYVGTVQGEIL   82 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGT--EEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESS-SEEEEEEETTSCEE
T ss_pred             cCCCCCCCEEEEEEeCCCC--EEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCC-CCEEEEccccccee
Confidence            5779999999999999999  89999999999999998765433   334699999999997653 47899999999999


Q ss_pred             EEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEE----
Q 001295          529 AWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI----  604 (1106)
Q Consensus       529 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----  604 (1106)
                      +|++...........+.....                    ....+.+++..+++++.++.+++||++++......    
T Consensus        83 ~w~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~  142 (342)
T d1yfqa_          83 KVDLIGSPSFQALTNNEANLG--------------------ICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNL  142 (342)
T ss_dssp             EECSSSSSSEEECBSCCCCSC--------------------EEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEES
T ss_pred             eeecccccccccccccccccc--------------------cccccccccccccccccccccceeeccccccceeeeccc
Confidence            999988766655444433222                    22233344457999999999999998655433222    


Q ss_pred             ccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccc
Q 001295          605 DADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLA  684 (1106)
Q Consensus       605 ~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  684 (1106)
                      ..+..........+.+++..+++++.|+.|++|++...... .....                                 
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~-~~~~~---------------------------------  188 (342)
T d1yfqa_         143 NSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD-NGTIE---------------------------------  188 (342)
T ss_dssp             CSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTC-CCEEE---------------------------------
T ss_pred             ccccccceeeeeeeeccCCceeeecCCCcEEEEecccCccc-ceeee---------------------------------
Confidence            22222234456778889999999999999999998765211 10000                                 


Q ss_pred             cccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEE-EEcCCCceEEEeec
Q 001295          685 DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRL-IFTNSGNAILALAS  763 (1106)
Q Consensus       685 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~s~~~~~l~~~~~  763 (1106)
                                                           .                 ......+... .+..++..+++++.
T Consensus       189 -------------------------------------~-----------------~~~~~~~~~~~~~~~~~~~~~~~s~  214 (342)
T d1yfqa_         189 -------------------------------------E-----------------SGLKYQIRDVALLPKEQEGYACSSI  214 (342)
T ss_dssp             -------------------------------------E-----------------CSCSSCEEEEEECSGGGCEEEEEET
T ss_pred             -------------------------------------e-----------------cccccceeeeEeecCCCCEEEeecC
Confidence                                                 0                 0011222333 33445667777788


Q ss_pred             CceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCCce
Q 001295          764 NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKT  843 (1106)
Q Consensus       764 dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~  843 (1106)
                      ||.+.+|++.....                      ..       ......                    .+  .....
T Consensus       215 dg~~~v~~~~~~~~----------------------~~-------~~~~~~--------------------~~--~~~~~  243 (342)
T d1yfqa_         215 DGRVAVEFFDDQGD----------------------DY-------NSSKRF--------------------AF--RCHRL  243 (342)
T ss_dssp             TSEEEEEECCTTCC----------------------ST-------TCTTCE--------------------EE--ECCCC
T ss_pred             CCeEEEEEecCCcc----------------------ee-------eccccc--------------------ee--eeeee
Confidence            88888876542100                      00       000000                    00  00111


Q ss_pred             eeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeC
Q 001295          844 MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS  923 (1106)
Q Consensus       844 ~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~  923 (1106)
                      ......|...|++++|+| ++++||+|+.||.|++||+.+++.+..+..+ ..+..++|+|++++|++++.|+++++|..
T Consensus       244 ~~~~~~~~~~v~~l~~sp-~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~~~~~l~~a~sdd~~~~~~~  321 (342)
T d1yfqa_         244 NLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             CTTCCSSCCCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred             ccCCCcccccceeEEecC-CccEEEEECCCCEEEEEECCCCcEEEEecCC-CCCEEEEEEeCCCEEEEEEcCCcEEEeee
Confidence            222345677899999999 8999999999999999999999999888644 34556788999999999999999888865


Q ss_pred             CC
Q 001295          924 DG  925 (1106)
Q Consensus       924 ~~  925 (1106)
                      ..
T Consensus       322 ~~  323 (342)
T d1yfqa_         322 ID  323 (342)
T ss_dssp             SC
T ss_pred             eC
Confidence            43

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=2.3e-26  Score=255.80  Aligned_cols=283  Identities=9%  Similarity=0.012  Sum_probs=209.9

Q ss_pred             cccceEEEEEcCCCceEEEeecC--ceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEe
Q 001295          742 RATKISRLIFTNSGNAILALASN--AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS  819 (1106)
Q Consensus       742 ~~~~i~~~~~s~~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s  819 (1106)
                      |...|.+++|+|||+.|++++.+  ..+++|+..                      ++....  +.  .|...+.+++|+
T Consensus        41 ~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~----------------------~~~~~~--~~--~~~~~v~~~~~s   94 (360)
T d1k32a3          41 EPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYR----------------------TGKAEK--FE--ENLGNVFAMGVD   94 (360)
T ss_dssp             CCSCEEEEEECSSSEEEEEEEETTEEEEEEEETT----------------------TCCEEE--CC--CCCCSEEEEEEC
T ss_pred             CCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECC----------------------CCcEEE--ee--CCCceEEeeeec
Confidence            66789999999999999888765  367777765                      333332  22  388999999999


Q ss_pred             cCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEee----------CCCcEEEEEeecceEEE
Q 001295          820 KNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM----------DDSSIQIYNVRVDEVKS  888 (1106)
Q Consensus       820 ~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~----------~dg~v~iwd~~~~~~~~  888 (1106)
                      ||+++|++++ ++.+++|++.+++....+..|...+.+++|+| |+++||.+.          .++.+++|++.+++...
T Consensus        95 pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~  173 (360)
T d1k32a3          95 RNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA  173 (360)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE
T ss_pred             ccccccceeccccccccccccccceeeeeecccccccchhhcc-ceeeeeeeccccccceeeccccceeeeccccCceee
Confidence            9999999998 89999999999999999999999999999999 889888543          45579999999887654


Q ss_pred             EecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccce--eecccCCCCCCCCCCceEEEcCCCcEEEEE-eC-
Q 001295          889 KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNR--FLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE-  964 (1106)
Q Consensus       889 ~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~d-  964 (1106)
                       +..|...+..++|+|||++|++++.|+.+.+|+..........  .......+.   ..+..+.|++++..++.+ .+ 
T Consensus       174 -~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~~~~~~~~~~~~  249 (360)
T d1k32a3         174 -ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIP---GSPNPTKLVPRSMTSEAGEYDL  249 (360)
T ss_dssp             -CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESST---TCCCGGGCCCGGGSCCCCCCCC
T ss_pred             -ecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEeccc---CccccceECCCcCcccccceee
Confidence             4457778899999999999999999999999997664321110  001111111   244567788888877652 11 


Q ss_pred             ----CeEEEEecCCceEeeecccCCCCCCeeEEEECCC---CCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCC
Q 001295          965 ----TQLAIFETTKLECVKQWVPRESSAPITHATFSCD---SQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSS 1037 (1106)
Q Consensus       965 ----~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d---~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 1037 (1106)
                          ..+..++...+......   .+...+..+.+.+.   +.++++++.++.|++||+.+++......       +   
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-------~---  316 (360)
T d1k32a3         250 NDMYKRSSPINVDPGDYRMII---PLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKN-------N---  316 (360)
T ss_dssp             TTGGGGCEECSCCCBCEEEEE---ECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEEE-------E---
T ss_pred             cccccceeecccCcCceeEee---ecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEecC-------C---
Confidence                23444555555443332   23445555555544   4468888999999999999887542211       1   


Q ss_pred             CCccceEEEEeCCCCCEEEEEeCCCcEEEEeecCCC
Q 001295         1038 SNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus      1038 ~~v~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
                        +.  .++|+| ||++|++++.||.|++||+.+++
T Consensus       317 --v~--~~~~Sp-DG~~l~~~~~Dg~i~v~d~~~~~  347 (360)
T d1k32a3         317 --LT--DLRLSA-DRKTVMVRKDDGKIYTFPLEKPE  347 (360)
T ss_dssp             --EE--EEEECT-TSCEEEEEETTSCEEEEESSCTT
T ss_pred             --cC--EEEECC-CCCEEEEEECCCeEEEEECCCCC
Confidence              44  799999 89999999999999999999988

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.94  E-value=2.2e-25  Score=252.29  Aligned_cols=362  Identities=9%  Similarity=0.013  Sum_probs=250.9

Q ss_pred             cCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCcee--EEEe-
Q 001295          422 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ--YIFE-  498 (1106)
Q Consensus       422 pdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~-  498 (1106)
                      ++.-++++.+.||+|.|||..+++.++   .+..| ..+..++|||||+  ++++++.|++|++||+.+++..  ..+. 
T Consensus        30 ~~~~~~v~~~d~g~v~v~D~~t~~v~~---~~~~g-~~~~~v~fSpDG~--~l~~~s~dg~v~~~d~~t~~~~~~~~i~~  103 (432)
T d1qksa2          30 LENLFSVTLRDAGQIALIDGSTYEIKT---VLDTG-YAVHISRLSASGR--YLFVIGRDGKVNMIDLWMKEPTTVAEIKI  103 (432)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEE---EEECS-SCEEEEEECTTSC--EEEEEETTSEEEEEETTSSSCCEEEEEEC
T ss_pred             CCcEEEEEEcCCCEEEEEECCCCcEEE---EEeCC-CCeeEEEECCCCC--EEEEEcCCCCEEEEEeeCCCceEEEEEec
Confidence            333445788999999999999999887   45555 3699999999999  7889999999999999887643  3332 


Q ss_pred             --ccCCCeEEEeccccCCceEE-EEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEc
Q 001295          499 --GHEAPVYSVCPHHKENIQFI-FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD  575 (1106)
Q Consensus       499 --~h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~  575 (1106)
                        +|.+.+.+..|  ++||++| ++++.++.|++||..+.+....+..+...+....+.++++          ...+.++
T Consensus       104 ~~~~~~~~~s~~~--SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~----------~~~v~~s  171 (432)
T d1qksa2         104 GSEARSIETSKME--GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPR----------VAAILAS  171 (432)
T ss_dssp             CSEEEEEEECCST--TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCC----------EEEEEEC
T ss_pred             CCCCCCeEEeccc--CCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCc----------eeEEEEC
Confidence              45555555565  4556664 7888899999999999888887776655555555556553          3456678


Q ss_pred             CCCCEEE-EEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCC-CcEEEEEccCCchhhhhhcccc
Q 001295          576 TTKNRFL-AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-NGIKILATSDGIRLLRTFENLA  653 (1106)
Q Consensus       576 ~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~  653 (1106)
                      |++..++ +...++.|.+|+..+++.......... .....++|+|||+++++++.+ +.+.++|..++ +....+....
T Consensus       172 ~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g-~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~-~~~~~~~~g~  249 (432)
T d1qksa2         172 HYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAE-RFLHDGGLDGSHRYFITAANARNKLVVIDTKEG-KLVAIEDTGG  249 (432)
T ss_dssp             SSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECC-SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT-EEEEEEECSS
T ss_pred             CCCCEEEEEEccCCeEEEEEccCCCcceEEEEccc-CccccceECCCCCEEEEeccccceEEEeecccc-eEEEEeccCc
Confidence            8877665 456789999999988775544332221 246789999999988887764 56778887665 2222111000


Q ss_pred             cccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccce
Q 001295          654 YDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCR  733 (1106)
Q Consensus       654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~  733 (1106)
                      .                                                                               
T Consensus       250 ~-------------------------------------------------------------------------------  250 (432)
T d1qksa2         250 Q-------------------------------------------------------------------------------  250 (432)
T ss_dssp             S-------------------------------------------------------------------------------
T ss_pred             c-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             ecccCccccccceEEEEEcCCCceEEEee-cCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCC
Q 001295          734 SLRLPENLRATKISRLIFTNSGNAILALA-SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEA  812 (1106)
Q Consensus       734 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  812 (1106)
                            ..+............+....+.. .++.+.+|....                      ..     ..  .+...
T Consensus       251 ------~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~----------------------~~-----~~--~~~~~  295 (432)
T d1qksa2         251 ------TPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDP----------------------EG-----HP--DNAWK  295 (432)
T ss_dssp             ------SBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT----------------------TT-----CT--TTBTS
T ss_pred             ------ccccCcccceecCCCCceecccccCCceEEeccccc----------------------cc-----cc--ccccE
Confidence                  00112222333333333333332 256777775431                      11     11  15667


Q ss_pred             eeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEec
Q 001295          813 VPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK  891 (1106)
Q Consensus       813 v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~  891 (1106)
                      +....+++++..+++++ +++.++|+..+..      .|......+++ | |++.|++++.|+.+++|++.++.   .+.
T Consensus       296 v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~------~~~~~~~sv~v-p-Dg~~la~~s~d~~~k~w~~~~~~---~l~  364 (432)
T d1qksa2         296 ILDSFPALGGGSLFIKTHPNSQYLYVDATLN------PEAEISGSVAV-F-DIKAMTGDGSDPEFKTLPIAEWA---GIT  364 (432)
T ss_dssp             EEEEEECSCSCCCCEECCTTCSEEEEECTTC------SSHHHHTCEEE-E-EGGGCCCSSSCCCEEEECHHHHH---TCC
T ss_pred             EEEEEEcCCCCeEEEEecCCccceeecccCC------CCCCeeeEEEE-E-echhhcccccCCceEeccccccc---ccC
Confidence            88999999999898887 8999999866533      23333345555 7 89999999999999999987664   334


Q ss_pred             CcccCeeEEEEecCCCEEEEEc-----CCCcEEEEeCCCccc
Q 001295          892 GHSKRITGLAFSHALNVLVSSG-----ADSQLCVWSSDGWEK  928 (1106)
Q Consensus       892 ~h~~~V~~l~~s~d~~~l~s~s-----~Dg~i~vwd~~~~~~  928 (1106)
                      .|...|.+++|||||++|+.+.     .+|.|+|||..+.+.
T Consensus       365 ~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~  406 (432)
T d1qksa2         365 EGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLEL  406 (432)
T ss_dssp             SSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred             CCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceE
Confidence            6778899999999999885553     468899999999654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.93  E-value=8.7e-24  Score=240.10  Aligned_cols=366  Identities=9%  Similarity=0.027  Sum_probs=243.2

Q ss_pred             EEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEe
Q 001295          462 DIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY  541 (1106)
Q Consensus       462 ~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  541 (1106)
                      ...++.|.+.+++++.+.||+|+|||+.+++.+.++..|. .+..++|+  +||+++++++.|++|++||+.+.+.....
T Consensus        23 ~~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafS--PDGk~l~~~~~d~~v~vwd~~t~~~~~~~   99 (426)
T d1hzua2          23 KQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMS--ASGRYLLVIGRDARIDMIDLWAKEPTKVA   99 (426)
T ss_dssp             SCCSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEEC--TTSCEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred             cccccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEEC--CCCCEEEEEeCCCCEEEEEccCCceeEEE
Confidence            3457777777678999999999999999999999999774 58899975  46689999999999999999987755433


Q ss_pred             eC-CCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEE-EECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEc
Q 001295          542 EA-PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA-AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN  619 (1106)
Q Consensus       542 ~~-~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  619 (1106)
                      .. .......+.+                 .+.|+|||+++++ +..++.+++||..+++++..+..+..  .+..+.+.
T Consensus       100 ~i~~~~~~~~~~~-----------------s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~--~~~~~~~~  160 (426)
T d1hzua2         100 EIKIGIEARSVES-----------------SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM--TVDTQTYH  160 (426)
T ss_dssp             EEECCSEEEEEEE-----------------CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEE--CSSSCCEE
T ss_pred             EEeCCCCCcceEE-----------------eeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCC--Cccceeec
Confidence            21 1111222222                 2345566667655 55899999999999999988876643  56667777


Q ss_pred             cCCCE-EEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCC
Q 001295          620 KDGCL-LAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNG  698 (1106)
Q Consensus       620 ~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  698 (1106)
                      +++.. .++.+.|+...++.....                                                        
T Consensus       161 ~~~~~~~i~~s~d~~~~~~~~~~~--------------------------------------------------------  184 (426)
T d1hzua2         161 PEPRVAAIIASHEHPEFIVNVKET--------------------------------------------------------  184 (426)
T ss_dssp             SCCCEEEEEECSSSSEEEEEETTT--------------------------------------------------------
T ss_pred             CCCceeEEEECCCCCEEEEecCCC--------------------------------------------------------
Confidence            77764 345566666655543221                                                        


Q ss_pred             CccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccC
Q 001295          699 DVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERN  778 (1106)
Q Consensus       699 ~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~  778 (1106)
                                       +.+.+++...                             +..+.         +..       
T Consensus       185 -----------------~~i~~~~~~~-----------------------------~~~~~---------~~~-------  202 (426)
T d1hzua2         185 -----------------GKVLLVNYKD-----------------------------IDNLT---------VTS-------  202 (426)
T ss_dssp             -----------------TEEEEEECSS-----------------------------SSSCE---------EEE-------
T ss_pred             -----------------CeEEEEEecc-----------------------------cccee---------eEE-------
Confidence                             1111111110                             00000         000       


Q ss_pred             CCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCCceeeeecCC--CCCe
Q 001295          779 SSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPP--PPAA  854 (1106)
Q Consensus       779 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~--~~~v  854 (1106)
                                                  ..+...+..++++|++++++++.  +..+.+++..+++........  ....
T Consensus       203 ----------------------------~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (426)
T d1hzua2         203 ----------------------------IGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPG  254 (426)
T ss_dssp             ----------------------------EECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCS
T ss_pred             ----------------------------eccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCccccc
Confidence                                        01455677888888888888776  467888988888877665422  2223


Q ss_pred             eEEEEecCCCc--eEEEeeCCCcEEEEEeec-------ceEEEEecCcccCeeEEEEecCCCEEEE-------EcCCCcE
Q 001295          855 TFLAFHPQDNN--IIAIGMDDSSIQIYNVRV-------DEVKSKLKGHSKRITGLAFSHALNVLVS-------SGADSQL  918 (1106)
Q Consensus       855 ~~l~~s~~d~~--~la~g~~dg~v~iwd~~~-------~~~~~~l~~h~~~V~~l~~s~d~~~l~s-------~s~Dg~i  918 (1106)
                      ....+......  ..+..+.|+.+.+|+...       ++....+.+|...+..++|+||+++|++       ++.|++|
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv  334 (426)
T d1hzua2         255 RGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSV  334 (426)
T ss_dssp             CCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCE
T ss_pred             ceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEE
Confidence            33444331222  222344577787877643       4788899999999999999999999994       5678999


Q ss_pred             EEEeCCCccccccee-ecccCCCCCCCCCCceEEEcCCCcEEEEE------eCCeEEEEecCCceEeeecccCCCCCCee
Q 001295          919 CVWSSDGWEKQKNRF-LQIPTGRTPTAQSDTRVQFHQDQIHFLVV------HETQLAIFETTKLECVKQWVPRESSAPIT  991 (1106)
Q Consensus       919 ~vwd~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~s~dg~~l~~~------~d~~v~i~d~~~~~~~~~~~~~~h~~~v~  991 (1106)
                      +|||+.+++...... .....++......+..++|||||++++++      .++.|+|||.++++....+.  ++  +  
T Consensus       335 ~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~--~~--~--  408 (426)
T d1hzua2         335 AVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK--DP--R--  408 (426)
T ss_dssp             EEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEEC--CT--T--
T ss_pred             EEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEEC--CC--C--
Confidence            999999877543211 11111122222467788999999987552      36789999999999888775  22  2  


Q ss_pred             EEEECCCCCEEE
Q 001295          992 HATFSCDSQLVY 1003 (1106)
Q Consensus       992 ~l~~s~d~~~l~ 1003 (1106)
                        .++|+|+|-+
T Consensus       409 --~~tp~Gk~~~  418 (426)
T d1hzua2         409 --LITPTGKFNV  418 (426)
T ss_dssp             --CCSEEEEEEH
T ss_pred             --ccCCCceEeE
Confidence              3467777743

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.88  E-value=3.2e-21  Score=212.35  Aligned_cols=331  Identities=11%  Similarity=0.007  Sum_probs=211.8

Q ss_pred             EEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeec-cccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEE
Q 001295          418 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI  496 (1106)
Q Consensus       418 l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~-~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~  496 (1106)
                      ++|+++++||++++.|++|.|||+.+++.++   ++. .|...+.+++|+|||+. ++++++.++.|++||+.+++.+..
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~---t~~~~~~~~p~~l~~spDG~~-l~v~~~~~~~v~~~d~~t~~~~~~   77 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYK---SCVMPDKFGPGTAMMAPDNRT-AYVLNNHYGDIYGIDLDTCKNTFH   77 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEE---EEECSSCCSSCEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEE---EEEcCCCCCcceEEECCCCCE-EEEEECCCCcEEEEeCccCeeeee
Confidence            4789999999999999999999999998765   343 45667899999999995 457888899999999999998877


Q ss_pred             EeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcC
Q 001295          497 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT  576 (1106)
Q Consensus       497 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~  576 (1106)
                      +...........                                      .+..++|+|||+.++........       
T Consensus        78 ~~~~~~~~~~~~--------------------------------------~~~~v~~s~DG~~l~v~~~~~~~-------  112 (346)
T d1jmxb_          78 ANLSSVPGEVGR--------------------------------------SMYSFAISPDGKEVYATVNPTQR-------  112 (346)
T ss_dssp             EESCCSTTEEEE--------------------------------------CSSCEEECTTSSEEEEEEEEEEE-------
T ss_pred             ecccccccccCC--------------------------------------ceEEEEEecCCCEEEEEecCCcc-------
Confidence            754322111000                                      01123334444322221111000       


Q ss_pred             CCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhccccccc
Q 001295          577 TKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDA  656 (1106)
Q Consensus       577 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  656 (1106)
                        ........++.+.+|+..+++....+..+.....+..+.+++++.+++.+   +.+.+|++.++ +....+..+... 
T Consensus       113 --~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~-  185 (346)
T d1jmxb_         113 --LNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG---PDIYKMDVKTG-KYTVALPLRNWN-  185 (346)
T ss_dssp             --CSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEES---SSEEEECTTTC-CEEEEECSTTCC-
T ss_pred             --eeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeC---CcceEEEccCC-CEEEEEecCCCc-
Confidence              00122345788999999887765544333223346677888888776653   56889998776 333333222110 


Q ss_pred             ccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCcc-ccccCCCceeeEecCCCCCCccceec
Q 001295          657 SRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPR-ITEESNDKSKVWKLTELSEPNQCRSL  735 (1106)
Q Consensus       657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~  735 (1106)
                                                               ......+++..+ +....++.+.+++..           
T Consensus       186 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  213 (346)
T d1jmxb_         186 -----------------------------------------RKGYSAPDVLYFWPHQSPRHEFSMLYTI-----------  213 (346)
T ss_dssp             -----------------------------------------CTTBCCCBCCCCCCCCCTTCEEEEEEEE-----------
T ss_pred             -----------------------------------------cceEEeccccEEEEEecCCCceEeeeee-----------
Confidence                                                     011112222222 222233333333221           


Q ss_pred             ccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeE
Q 001295          736 RLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC  815 (1106)
Q Consensus       736 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~  815 (1106)
                                   ..+.+....+.++..++.+.+|++.                      ++.........  +...+..
T Consensus       214 -------------~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~--~~~~~~~  256 (346)
T d1jmxb_         214 -------------ARFKDDKQDPATADLLYGYLSVDLK----------------------TGKTHTQEFAD--LTELYFT  256 (346)
T ss_dssp             -------------EEC-------CCCEEEEEEEEEETT----------------------TCCEEEEEEEE--CSSCEEE
T ss_pred             -------------eeeccCceeEeeccCCceEEEEECC----------------------CCceEEEEeec--ccceeEE
Confidence                         1222333445555556677777654                      33322222222  6777889


Q ss_pred             EEEecCCCEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCccc
Q 001295          816 FALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK  895 (1106)
Q Consensus       816 l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~  895 (1106)
                      +.+++++.+++...++.|.+||..+++.+..+. +...+.+++|+| |+++|++++.||.|+|||+.+++.+.+++.+.+
T Consensus       257 ~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~-DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~g  334 (346)
T d1jmxb_         257 GLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDK-KGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGG  334 (346)
T ss_dssp             EEECSSCTTEEEEEESEEEEEETTTTEEEEEEE-CSSCCCEEEECS-SSSCEEEESBSSEEEEEETTTTEEEEEEECSSS
T ss_pred             EEEeCCCCEEEEecCCeEEEEECCCCcEEEEEc-CCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECccCCEEEEEECCCC
Confidence            999999999998888899999999999888876 445799999999 899999999999999999999999998875443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=1.4e-20  Score=206.24  Aligned_cols=313  Identities=9%  Similarity=0.036  Sum_probs=208.2

Q ss_pred             CEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCe
Q 001295          425 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV  504 (1106)
Q Consensus       425 ~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v  504 (1106)
                      +||++++.|++|.|||+.+++.+..+ .+..+...+.+++|+|||+. ++++++.++.|.+||+.+++.+..+..+....
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i-~~~~~~~~~~~i~~spDg~~-l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~   79 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVI-TIADAGPTPMVPMVAPGGRI-AYATVNKSESLVKIDLVTGETLGRIDLSTPEE   79 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEE-ECTTCTTCCCCEEECTTSSE-EEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEE-ECCCCCCCccEEEECCCCCE-EEEEECCCCeEEEEECCCCcEEEEEecCCCcc
Confidence            58999999999999999999877643 23345567899999999995 45678889999999999999998887654332


Q ss_pred             -----EEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCC
Q 001295          505 -----YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN  579 (1106)
Q Consensus       505 -----~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~  579 (1106)
                           ..++|+  +++++++++..+.....|                                                 
T Consensus        80 ~~~~~~~v~~s--~dg~~l~~~~~~~~~~~~-------------------------------------------------  108 (337)
T d1pbyb_          80 RVKSLFGAALS--PDGKTLAIYESPVRLELT-------------------------------------------------  108 (337)
T ss_dssp             EEECTTCEEEC--TTSSEEEEEEEEEEECSS-------------------------------------------------
T ss_pred             cccceeeEEEc--CCCcEEEEeecCCcceee-------------------------------------------------
Confidence                 233332  333445444433322222                                                 


Q ss_pred             EEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccC
Q 001295          580 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT  659 (1106)
Q Consensus       580 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  659 (1106)
                        .....++.+.+||..+++....+....   .+..++|+|||+++++++.  .+.+||..++ +....+..+....   
T Consensus       109 --~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~-~~~~~~~~~~~~~---  177 (337)
T d1pbyb_         109 --HFEVQPTRVALYDAETLSRRKAFEAPR---QITMLAWARDGSKLYGLGR--DLHVMDPEAG-TLVEDKPIQSWEA---  177 (337)
T ss_dssp             --CEEECCCEEEEEETTTTEEEEEEECCS---SCCCEEECTTSSCEEEESS--SEEEEETTTT-EEEEEECSTTTTT---
T ss_pred             --eccccccceeeccccCCeEEEeccccC---CceEEEEcCCCCEEEEEcC--CcceeeeecC-cEEEEeecCCccc---
Confidence              223356789999999999988887543   4788999999999999864  5778998877 3333222111100   


Q ss_pred             CCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCc
Q 001295          660 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE  739 (1106)
Q Consensus       660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~  739 (1106)
                                                             .....+++..+.......                       
T Consensus       178 ---------------------------------------~~~~~~~~~~~~~~~~~~-----------------------  195 (337)
T d1pbyb_         178 ---------------------------------------ETYAQPDVLAVWNQHESS-----------------------  195 (337)
T ss_dssp             ---------------------------------------TTBCCCBCCCCCCCCTTT-----------------------
T ss_pred             ---------------------------------------cceecCCcceeecccccc-----------------------
Confidence                                                   000011111111110000                       


Q ss_pred             cccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEe
Q 001295          740 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS  819 (1106)
Q Consensus       740 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s  819 (1106)
                        +...+.......+.........++.+.+|+..                      ++.........  +...+..++++
T Consensus       196 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~--~~~~~~~~~~~  249 (337)
T d1pbyb_         196 --GVMATPFYTARKDIDPADPTAYRTGLLTMDLE----------------------TGEMAMREVRI--MDVFYFSTAVN  249 (337)
T ss_dssp             --TEEEEEEEEEBTTSCTTSGGGEEEEEEEEETT----------------------TCCEEEEEEEE--CSSCEEEEEEC
T ss_pred             --ceeeeeeeeeeeccceeeecccCccEEEEEcC----------------------CCcEEEEEecC--CCcceEEEEec
Confidence              11111122222333334444455566666554                      33322222222  66778889999


Q ss_pred             cCCCEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecC
Q 001295          820 KNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG  892 (1106)
Q Consensus       820 ~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~  892 (1106)
                      +++.+++.+ ++.|++||+.+++.+..+. +...+.+++|+| ||++|++++.||.|+|||..+++.+.+++.
T Consensus       250 ~~~~~~~~~-~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~-dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         250 PAKTRAFGA-YNVLESFDLEKNASIKRVP-LPHSYYSVNVST-DGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             TTSSEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             ccceEEEEc-cccEEEEECCCCcEEEEEc-CCCCEEEEEECC-CCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence            999988765 6899999999999988876 556789999999 899999999999999999999999988764

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=5.7e-21  Score=209.36  Aligned_cols=292  Identities=11%  Similarity=0.076  Sum_probs=199.5

Q ss_pred             CEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEE-EEeCCCcEEEEEccCCchhhhhhcccccccc
Q 001295          579 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA-VSTNDNGIKILATSDGIRLLRTFENLAYDAS  657 (1106)
Q Consensus       579 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  657 (1106)
                      +++++++.|++|++||+.+++.+..+..+.....+.+++|+|||++++ +++.++.|.+||+.++ +.+..+..+..   
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~-~~~~~~~~~~~---   77 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG-ETLGRIDLSTP---   77 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC-CEEEEEECCBT---
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCC-cEEEEEecCCC---
Confidence            379999999999999999999999997765555678999999999874 5677899999999887 33322211100   


Q ss_pred             cCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceeccc
Q 001295          658 RTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL  737 (1106)
Q Consensus       658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~  737 (1106)
                                                                                                      
T Consensus        78 --------------------------------------------------------------------------------   77 (337)
T d1pbyb_          78 --------------------------------------------------------------------------------   77 (337)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEE
Q 001295          738 PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA  817 (1106)
Q Consensus       738 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~  817 (1106)
                        ..+...+..++|+|+++.++++..+.....|...                                            
T Consensus        78 --~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~--------------------------------------------  111 (337)
T d1pbyb_          78 --EERVKSLFGAALSPDGKTLAIYESPVRLELTHFE--------------------------------------------  111 (337)
T ss_dssp             --TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEE--------------------------------------------
T ss_pred             --cccccceeeEEEcCCCcEEEEeecCCcceeeecc--------------------------------------------
Confidence              0022334568899999988887776554433211                                            


Q ss_pred             EecCCCEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCe
Q 001295          818 LSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI  897 (1106)
Q Consensus       818 ~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V  897 (1106)
                                ..++.+.+||..+++....+.. ...+..++|+| +++++++++.  .+.+||..+++....+..+... 
T Consensus       112 ----------~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~-  176 (337)
T d1pbyb_         112 ----------VQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWE-  176 (337)
T ss_dssp             ----------ECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEESS--SEEEEETTTTEEEEEECSTTTT-
T ss_pred             ----------ccccceeeccccCCeEEEeccc-cCCceEEEEcC-CCCEEEEEcC--CcceeeeecCcEEEEeecCCcc-
Confidence                      1145566666666666655553 33456666776 6666666543  3556666666665555432211 


Q ss_pred             eEEEEec------------------------CCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEc
Q 001295          898 TGLAFSH------------------------ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH  953 (1106)
Q Consensus       898 ~~l~~s~------------------------d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  953 (1106)
                      ....+++                        +...+..++.++.+.+|+..++.........    +.   ..+..++++
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~  249 (337)
T d1pbyb_         177 AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI----MD---VFYFSTAVN  249 (337)
T ss_dssp             TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE----CS---SCEEEEEEC
T ss_pred             ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecC----CC---cceEEEEec
Confidence            1111112                        1222223344556888988876543222111    11   255778999


Q ss_pred             CCCcEEEEEeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295          954 QDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus       954 ~dg~~l~~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
                      +++.++++. ++.+++||+.+++.+..+.   +...+.+++|+|||++|++++.|++|+|||..+++.+.++.
T Consensus       250 ~~~~~~~~~-~~~i~v~d~~~~~~~~~~~---~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~  318 (337)
T d1pbyb_         250 PAKTRAFGA-YNVLESFDLEKNASIKRVP---LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             TTSSEEEEE-ESEEEEEETTTTEEEEEEE---CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred             ccceEEEEc-cccEEEEECCCCcEEEEEc---CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEE
Confidence            999988764 5899999999999998875   35678999999999999999999999999999999999887

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.87  E-value=9.1e-20  Score=196.05  Aligned_cols=199  Identities=13%  Similarity=0.098  Sum_probs=153.7

Q ss_pred             eeEEEEecCCCEEEEEe--CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCce-EEEeeCCCcEEEEEeecceEEEE
Q 001295          813 VPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI-IAIGMDDSSIQIYNVRVDEVKSK  889 (1106)
Q Consensus       813 v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~-la~g~~dg~v~iwd~~~~~~~~~  889 (1106)
                      +..+++++++..++++.  ++.+.+|+..+++....+..+ ....+++|+| ++.. ++++..++.+.+|+..+++.+..
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-dg~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (301)
T d1l0qa2          76 PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAVINT  153 (301)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ccccccccccccccccccccceeeecccccceeeeecccc-ccceEEEeec-CCCeeeeeeccccceeeeeccccceeee
Confidence            45677777777666554  578999999988888877744 4678999999 5554 56666788999999999998888


Q ss_pred             ecCcccCeeEEEEecCCCEEEEEcCC-CcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-Ee---C
Q 001295          890 LKGHSKRITGLAFSHALNVLVSSGAD-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VH---E  964 (1106)
Q Consensus       890 l~~h~~~V~~l~~s~d~~~l~s~s~D-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~---d  964 (1106)
                      +..+ ..+..++++|++..+++++.+ +.+.+|+....+..     ......    ..+..++|++++..+++ +.   +
T Consensus       154 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~----~~~~~~~~~~~g~~~~v~~~~~~~  223 (301)
T d1l0qa2         154 VSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI-----DTVKVE----AAPSGIAVNPEGTKAYVTNVDKYF  223 (301)
T ss_dssp             EECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE-----EEEECS----SEEEEEEECTTSSEEEEEEECSSC
T ss_pred             cccC-CCceEEEeeccccceeeecccccccccccccceeee-----eccccc----CCcceeecccccccccccccccee
Confidence            7755 457889999999988877765 56667777664321     111111    24578999999998876 33   3


Q ss_pred             CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEE-EEEEcCCeEEEEEcCCceeEEeeC
Q 001295          965 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLV-YACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus       965 ~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l-~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
                      +.|.+||+.+++.+..+..   ...+.+++|+|||++| ++++.|++|++||+++++.+.++.
T Consensus       224 ~~v~v~D~~t~~~~~~~~~---~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         224 NTVSMIDTGTNKITARIPV---GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             CEEEEEETTTTEEEEEEEC---CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             eeeeeeecCCCeEEEEEcC---CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence            6899999999999887753   4578999999999987 577789999999999999998886

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.86  E-value=7.8e-21  Score=209.15  Aligned_cols=331  Identities=9%  Similarity=-0.006  Sum_probs=219.7

Q ss_pred             EEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEE-EEeCCCcEEEEEccCCchhhhhhcc
Q 001295          573 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA-VSTNDNGIKILATSDGIRLLRTFEN  651 (1106)
Q Consensus       573 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~  651 (1106)
                      +++++++++++++.++.|.+||+.+++.+.++..... ..+.+++|+|||++++ ++..++.|.+||+.++ +....+..
T Consensus         3 a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~-~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~-~~~~~~~~   80 (346)
T d1jmxb_           3 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK-FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC-KNTFHANL   80 (346)
T ss_dssp             CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSC-CSSCEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEES
T ss_pred             cCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCC-CCcceEEECCCCCEEEEEECCCCcEEEEeCccC-eeeeeecc
Confidence            4677778999999999999999999999998875432 2467999999999875 4557899999999887 22222211


Q ss_pred             cccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCcc
Q 001295          652 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ  731 (1106)
Q Consensus       652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~  731 (1106)
                      ....                                                                            
T Consensus        81 ~~~~----------------------------------------------------------------------------   84 (346)
T d1jmxb_          81 SSVP----------------------------------------------------------------------------   84 (346)
T ss_dssp             CCST----------------------------------------------------------------------------
T ss_pred             cccc----------------------------------------------------------------------------
Confidence            0000                                                                            


Q ss_pred             ceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCC
Q 001295          732 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE  811 (1106)
Q Consensus       732 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  811 (1106)
                              ......+..++|+|||++++++..+.....|....          ....+.+|+..++...... .......
T Consensus        85 --------~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~~~-~~~~~~~  145 (346)
T d1jmxb_          85 --------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVV----------KPPRLEVFSTADGLEAKPV-RTFPMPR  145 (346)
T ss_dssp             --------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEE----------CCCEEEEEEGGGGGGBCCS-EEEECCS
T ss_pred             --------cccCCceEEEEEecCCCEEEEEecCCcceeeeecc----------CcceEEEEecccceeeeEE-EeeeccC
Confidence                    00222345688999999888776543322221110          0001223333333322110 0001234


Q ss_pred             CeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEec
Q 001295          812 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK  891 (1106)
Q Consensus       812 ~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~  891 (1106)
                      .+..+.++++++++++  ++.+.+|++.+++.+..+..+. ....+.++|+...+++.+..++.+.+++..         
T Consensus       146 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  213 (346)
T d1jmxb_         146 QVYLMRAADDGSLYVA--GPDIYKMDVKTGKYTVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLYTI---------  213 (346)
T ss_dssp             SCCCEEECTTSCEEEE--SSSEEEECTTTCCEEEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEEEEE---------
T ss_pred             ceEEEEecCCCEEEEe--CCcceEEEccCCCEEEEEecCC-CccceEEeccccEEEEEecCCCceEeeeee---------
Confidence            4566777777776654  3568999999999888877543 456677888333444555555666665532         


Q ss_pred             CcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEe
Q 001295          892 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFE  971 (1106)
Q Consensus       892 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d  971 (1106)
                              ..+......++++..++.+.+|++.++.......    ..+.   ..+..+.+++++.+++...++.|.+||
T Consensus       214 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~~~~~~~~~v~v~d  278 (346)
T d1jmxb_         214 --------ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF----ADLT---ELYFTGLRSPKDPNQIYGVLNRLAKYD  278 (346)
T ss_dssp             --------EEC-------CCCEEEEEEEEEETTTCCEEEEEE----EECS---SCEEEEEECSSCTTEEEEEESEEEEEE
T ss_pred             --------eeeccCceeEeeccCCceEEEEECCCCceEEEEe----eccc---ceeEEEEEeCCCCEEEEecCCeEEEEE
Confidence                    1123344556667777889999998865432211    1111   256788999999999887778999999


Q ss_pred             cCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCC
Q 001295          972 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAG 1034 (1106)
Q Consensus       972 ~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~ 1034 (1106)
                      ..+++.+..+..   ...+.+++|||||++|++++.|+.|+|||+.+++.+.++.    +|.+
T Consensus       279 ~~~~~~~~~~~~---~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~----~p~g  334 (346)
T d1jmxb_         279 LKQRKLIKAANL---DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK----LPGG  334 (346)
T ss_dssp             TTTTEEEEEEEC---SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE----CSSS
T ss_pred             CCCCcEEEEEcC---CCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEE----CCCC
Confidence            999999887753   4579999999999999999999999999999999999988    5555

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.85  E-value=2.6e-18  Score=191.11  Aligned_cols=331  Identities=9%  Similarity=-0.001  Sum_probs=214.2

Q ss_pred             cCCCCcEEEEEecCCCeEEEEEe----ccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccC
Q 001295          348 NQGSSPMSMDFHPVQQTLLLVGT----NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  423 (1106)
Q Consensus       348 ~h~~~v~~~~~sp~g~~llatg~----~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd  423 (1106)
                      .+..++..++++|||++++++..    ..+.|.+||..+++.+..                   +..+..  ..++||||
T Consensus        18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~-------------------~~~~~~--~~~a~SpD   76 (373)
T d2madh_          18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFL--PNPVAAHS   76 (373)
T ss_pred             cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEE-------------------EeCCCC--ccEEEcCC
Confidence            37789999999999998665522    235799999999988764                   233332  36999999


Q ss_pred             CCEEEEEe----------CCCeEEEEEccCCceeeeeeeeccccCC-------eeEEEEcCCCCceEEEEecCCCcEEEE
Q 001295          424 GSLFGVAY----------SRHIVQIYSYHGGDEVRQHLEIDAHVGG-------VNDIAFSHPNKQLCVITCGDDKTIKVW  486 (1106)
Q Consensus       424 g~~las~~----------~d~~v~iwd~~~~~~~~~~~~l~~h~~~-------V~~~~~s~d~~~~~l~s~~~d~~i~iw  486 (1106)
                      |++|++++          .++.|.+||..+++.+..   +..+...       ...+.|++|++.+++.....++.+.+|
T Consensus        77 G~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~---~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~  153 (373)
T d2madh_          77 GSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIAD---IELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLV  153 (373)
T ss_pred             CCEEEEEeecCCcccccccceEEEEEECCCCcEEEE---EecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEe
Confidence            99999875          357899999999987653   3333332       256889999997556666677899999


Q ss_pred             eCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeec
Q 001295          487 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  566 (1106)
Q Consensus       487 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  566 (1106)
                      +..+++......    ...++.++++.. ..+++.+.|+.+.+|+................        .+.       .
T Consensus       154 ~~~~~~~~~~~~----~~~~~~~s~~g~-~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~--------~~~-------~  213 (373)
T d2madh_         154 VQGGSSDDQLLS----SPTCYHIHPGAP-STFYLLCAQGGLAKTDHAGGAAGAGLVGAMLT--------AAQ-------N  213 (373)
T ss_pred             eccCCeEEEEec----cceeEEEecCCC-cEEEEEcCCCeEEEEEcCCceeeEEEeeeccc--------cCc-------c
Confidence            988877654443    345666666543 46788899999999998876554433221110        000       0


Q ss_pred             cceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhh
Q 001295          567 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL  646 (1106)
Q Consensus       567 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  646 (1106)
                      .......+.+++ .++..+.++.+.+|+..++...................+.                           
T Consensus       214 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------  265 (373)
T d2madh_         214 LLTQPAQANKSG-RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWR---------------------------  265 (373)
T ss_pred             ceeeeEEECCCc-eEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeec---------------------------
Confidence            001112222222 2455666778888887654432221110000000000000                           


Q ss_pred             hhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCC
Q 001295          647 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL  726 (1106)
Q Consensus       647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~  726 (1106)
                                                                                                      
T Consensus       266 --------------------------------------------------------------------------------  265 (373)
T d2madh_         266 --------------------------------------------------------------------------------  265 (373)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCC
Q 001295          727 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  806 (1106)
Q Consensus       727 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  806 (1106)
                                      ......+++++++..++.                                              
T Consensus       266 ----------------~~~~~~~~~~~d~~~~~~----------------------------------------------  283 (373)
T d2madh_         266 ----------------PGGWQQVAYLKSSDGIYL----------------------------------------------  283 (373)
T ss_pred             ----------------cCcceeeEEecCCCeEEE----------------------------------------------
Confidence                            011123344444433221                                              


Q ss_pred             CCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCc--eEEEeeCCCcEEEEEeec
Q 001295          807 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN--IIAIGMDDSSIQIYNVRV  883 (1106)
Q Consensus       807 ~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~--~la~g~~dg~v~iwd~~~  883 (1106)
                                 +..++..+++.. ++.+.+||..+++.+..+. +...+..++|+| ||+  ++++++.|+.|+|||+.+
T Consensus       284 -----------~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~sp-DG~~~l~vt~~~d~~v~v~D~~t  350 (373)
T d2madh_         284 -----------LTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGA  350 (373)
T ss_pred             -----------ecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECC-CCCEEEEEEeCCCCeEEEEECCC
Confidence                       122333444444 7889999999999888876 556789999999 776  457889999999999999


Q ss_pred             ceEEEEecCcccCeeEEEEecC
Q 001295          884 DEVKSKLKGHSKRITGLAFSHA  905 (1106)
Q Consensus       884 ~~~~~~l~~h~~~V~~l~~s~d  905 (1106)
                      ++.+.++.+|....+.|++.++
T Consensus       351 g~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         351 GDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             CCEEEEECCCCCCCcEEEEecC
Confidence            9999999988888888887654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.84  E-value=1.1e-18  Score=187.46  Aligned_cols=259  Identities=15%  Similarity=0.148  Sum_probs=192.7

Q ss_pred             CCCCcceeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeE
Q 001295          337 EDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN  416 (1106)
Q Consensus       337 ~~~~~~~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~  416 (1106)
                      |....++...+.....+..++|||||++|+++++.++.|.+||+.+++.+..                   +..|. .+.
T Consensus        18 D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~-------------------~~~~~-~~~   77 (301)
T d1l0qa2          18 DVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT-------------------VPAGS-SPQ   77 (301)
T ss_dssp             ETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE-------------------EECSS-SEE
T ss_pred             ECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeee-------------------eeccc-ccc
Confidence            3345567777787788999999999998778888899999999999987764                   33333 578


Q ss_pred             EEEEccCCCEEEE-EeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeE
Q 001295          417 RVIWSPDGSLFGV-AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY  495 (1106)
Q Consensus       417 ~l~~spdg~~las-~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~  495 (1106)
                      .++|+++++++++ +..++.+.+|+..+++...   .+. +...+.+++|+|++.. +++++..++.+.+|+..+++.+.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~dg~~-~~~~~~~~~~~~~~~~~~~~~~~  152 (301)
T d1l0qa2          78 GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG---TVK-TGKSPLGLALSPDGKK-LYVTNNGDKTVSVINTVTKAVIN  152 (301)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETTTTEEEE---EEE-CSSSEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEE
T ss_pred             ccccccccccccccccccceeeecccccceeee---ecc-ccccceEEEeecCCCe-eeeeeccccceeeeeccccceee
Confidence            9999999997665 4567889999999987665   233 4567889999999996 56778889999999999999988


Q ss_pred             EEeccCCCeEEEeccccCCceEEEEEec-CCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEE
Q 001295          496 IFEGHEAPVYSVCPHHKENIQFIFSTAL-DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF  574 (1106)
Q Consensus       496 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~  574 (1106)
                      .+..+ ..+..+.++++.  ..+++++. ++.+.+|+............ ...+..+++++++.                
T Consensus       153 ~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~----------------  212 (301)
T d1l0qa2         153 TVSVG-RSPKGIAVTPDG--TKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGT----------------  212 (301)
T ss_dssp             EEECC-SSEEEEEECTTS--SEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSS----------------
T ss_pred             ecccC-CCceEEEeeccc--cceeeecccccccccccccceeeeecccc-cCCcceeecccccc----------------
Confidence            88754 456777775543  45555554 56777777665443333332 23344555555554                


Q ss_pred             cCCCCEEEEEE---CCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEE-EEEeCCCcEEEEEccCCchhhhhh
Q 001295          575 DTTKNRFLAAG---DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL-AVSTNDNGIKILATSDGIRLLRTF  649 (1106)
Q Consensus       575 ~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~  649 (1106)
                           .++.++   .++.|++||+.+++.+..+....   .+.+++|+|||++| ++++.++.|++||+.++ +.+..+
T Consensus       213 -----~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~---~~~~va~spdg~~l~va~~~~~~i~v~D~~t~-~~~~~~  282 (301)
T d1l0qa2         213 -----KAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFCNTVSVIDTATN-TITATM  282 (301)
T ss_dssp             -----EEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEE
T ss_pred             -----ccccccccceeeeeeeeecCCCeEEEEEcCCC---CEEEEEEeCCCCEEEEEECCCCeEEEEECCCC-eEEEEE
Confidence                 555433   35789999999999988886543   47899999999987 56777999999999988 444444

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.79  E-value=5.4e-18  Score=186.95  Aligned_cols=206  Identities=11%  Similarity=0.026  Sum_probs=131.7

Q ss_pred             CcEEEEEecCCCeEEEEEe----ccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEE
Q 001295          352 SPMSMDFHPVQQTLLLVGT----NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF  427 (1106)
Q Consensus       352 ~v~~~~~sp~g~~llatg~----~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l  427 (1106)
                      ++.-.+.+|||++++++..    .++.|.|||..+++.+..                   +..+  .+..++|||||++|
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~-------------------~~~g--~~~~~a~SpDg~~l   61 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGM-------------------IDGG--FLPNPVVADDGSFI   61 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEE-------------------EEEC--SSCEEEECTTSSCE
T ss_pred             CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEE-------------------EECC--CCCceEEcCCCCEE
Confidence            3444467899998655532    345799999999987764                   2222  33479999999999


Q ss_pred             EEEe----------CCCeEEEEEccCCceeeeeeeecccc----CCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCce
Q 001295          428 GVAY----------SRHIVQIYSYHGGDEVRQHLEIDAHV----GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK  493 (1106)
Q Consensus       428 as~~----------~d~~v~iwd~~~~~~~~~~~~l~~h~----~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~  493 (1106)
                      ++++          .|+.|++||..+++.+..+.....+.    .....++|+++++.++++..+.+..+.+||..+++.
T Consensus        62 ~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~  141 (355)
T d2bbkh_          62 AHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF  141 (355)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred             EEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcE
Confidence            8653          47899999999998776443222222    234678999999975555667788999999999998


Q ss_pred             eEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEE
Q 001295          494 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  573 (1106)
Q Consensus       494 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~  573 (1106)
                      +..+..+..... ..  ...  ...++.+.|+...++.                                          
T Consensus       142 ~~~~~~~~~~~~-~~--~~~--~~~~~~~~dg~~~~v~------------------------------------------  174 (355)
T d2bbkh_         142 KRMLDVPDCYHI-FP--TAP--DTFFMHCRDGSLAKVA------------------------------------------  174 (355)
T ss_dssp             EEEEECCSEEEE-EE--EET--TEEEEEETTSCEEEEE------------------------------------------
T ss_pred             eeEEecCCcceE-ee--cCC--cceEEEcCCCCEEEEE------------------------------------------
Confidence            887764432211 00  011  1223333333333222                                          


Q ss_pred             EcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295          574 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       574 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                                ...++.+.+++......       .+...+....+.+++..++.++.++.+++|+...+
T Consensus       175 ----------~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  226 (355)
T d2bbkh_         175 ----------FGTEGTPEITHTEVFHP-------EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSG  226 (355)
T ss_dssp             ----------CCSSSCCEEEECCCCSC-------TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTS
T ss_pred             ----------ecCCCeEEEEecccccc-------eecceeeeccccCCCCeEEEecCCCeEEEEecCCC
Confidence                      22233444444433321       11223556788888888999999999999998765

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.77  E-value=2.8e-16  Score=174.33  Aligned_cols=306  Identities=8%  Similarity=-0.064  Sum_probs=204.2

Q ss_pred             eeEEEEcCCCCEEEEE-----ECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeC----------CCc
Q 001295          569 LGVVQFDTTKNRFLAA-----GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN----------DNG  633 (1106)
Q Consensus       569 i~~~~~~~~~~~l~~~-----~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----------dg~  633 (1106)
                      +..++++|++..++..     +..+.|.+||..+++.+..+..+.    ...++|+|||++|+++..          ++.
T Consensus        23 ~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~----~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~   98 (373)
T d2madh_          23 TNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF----LPNPVAAHSGSEFALASTSFSRIAKGKRTDY   98 (373)
T ss_pred             ccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCC----CccEEEcCCCCEEEEEeecCCcccccccceE
Confidence            3344444444455443     345679999999999999886442    346999999999998754          467


Q ss_pred             EEEEEccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCcccccc
Q 001295          634 IKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEE  713 (1106)
Q Consensus       634 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  713 (1106)
                      |.+||..++ +....+..+.....                                                    .   
T Consensus        99 v~v~D~~t~-~~~~~~~~~~~~~~----------------------------------------------------~---  122 (373)
T d2madh_          99 VEVFDPVTF-LPIADIELPDAPRF----------------------------------------------------D---  122 (373)
T ss_pred             EEEEECCCC-cEEEEEecCCccee----------------------------------------------------E---
Confidence            888888776 33222211110000                                                    0   


Q ss_pred             CCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeec--CceEEEeeccccccCCCCccccccCccc
Q 001295          714 SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS--NAIHLLWKWQRTERNSSGKATASVAPQL  791 (1106)
Q Consensus       714 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~  791 (1106)
                                                  .......+.|+++++.+++...  ++.+.+|+..                  
T Consensus       123 ----------------------------~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~------------------  156 (373)
T d2madh_         123 ----------------------------VGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQG------------------  156 (373)
T ss_pred             ----------------------------eccCCCcEEEEeCCCcEEEEEEcCCCceEEeecc------------------
Confidence                                        0011235788888887665543  3455555543                  


Q ss_pred             cCCCCCCccccccCCCCCCCCeeEEEEecCCCEEE-EEe-CCeEEEEEcCCCceeeeecCC------CCCeeEEEEecCC
Q 001295          792 WQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVM-SAS-GGKISLFNMMTFKTMATFMPP------PPAATFLAFHPQD  863 (1106)
Q Consensus       792 w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~-~~s-dg~i~vwd~~~~~~~~~~~~~------~~~v~~l~~s~~d  863 (1106)
                          .+....       +.....++.++|+++.++ +.+ |+++.+|+..++........+      ......+.+++ +
T Consensus       157 ----~~~~~~-------~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  224 (373)
T d2madh_         157 ----GSSDDQ-------LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANK-S  224 (373)
T ss_pred             ----CCeEEE-------EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECC-C
Confidence                333222       344567899999998664 444 899999999988776654322      22234455555 5


Q ss_pred             CceEEEeeCCCcEEEEEeecceE--EEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCC
Q 001295          864 NNIIAIGMDDSSIQIYNVRVDEV--KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT  941 (1106)
Q Consensus       864 ~~~la~g~~dg~v~iwd~~~~~~--~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~  941 (1106)
                      +. ++..+.++.+++|+..++..  +..+..+......+.+.|.+...+..+.|+....+-                   
T Consensus       225 ~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-------------------  284 (373)
T d2madh_         225 GR-IVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLL-------------------  284 (373)
T ss_pred             ce-EEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEe-------------------
Confidence            54 44556789999999887653  344555666677777777777777777776543332                   


Q ss_pred             CCCCCCceEEEcCCCcEEEE-EeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCE--EEEEEcCCeEEEEEcCC
Q 001295          942 PTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQL--VYACFLDATVCVFSAAN 1018 (1106)
Q Consensus       942 ~~~~~i~~~~~s~dg~~l~~-~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~--l~t~s~Dg~i~vwd~~~ 1018 (1106)
                                 ..++..++. ..++.+.+||..+++.+..+.   +...+.+++|+|||+.  +++++.|++|+|||+.+
T Consensus       285 -----------~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~---~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~t  350 (373)
T d2madh_         285 -----------TSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS---LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGA  350 (373)
T ss_pred             -----------cCCCceEEeecCCCeEEEEECCCCcEEEEec---CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCC
Confidence                       222333344 577889999999999988774   4678999999999984  46788999999999999


Q ss_pred             ceeEEeeC
Q 001295         1019 LKLRCRIN 1026 (1106)
Q Consensus      1019 ~~~~~~~~ 1026 (1106)
                      ++.+..+.
T Consensus       351 g~~~~~~~  358 (373)
T d2madh_         351 GDQDQSTV  358 (373)
T ss_pred             CCEEEEEC
Confidence            99999887

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=7.1e-17  Score=175.93  Aligned_cols=286  Identities=10%  Similarity=0.112  Sum_probs=190.3

Q ss_pred             cccccCCCceeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeec-CceEEEeeccccccCCCCcccccc
Q 001295          709 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS-NAIHLLWKWQRTERNSSGKATASV  787 (1106)
Q Consensus       709 l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~  787 (1106)
                      +++++.+++|++|++.........+.+     .+...+..++|+|||++|++++. |+.|++|++.......        
T Consensus         7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~-----~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~--------   73 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHEGALTLTQVV-----DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL--------   73 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEE-----ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE--------
T ss_pred             EEECCCCCcEEEEEEcCCCCeEEEEEE-----cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcE--------
Confidence            477788999999999864433333332     26678999999999999966665 7999999876321100        


Q ss_pred             CccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCCceeee--ecCCCCCeeEEEEecCC
Q 001295          788 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQD  863 (1106)
Q Consensus       788 ~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~--~~~~~~~v~~l~~s~~d  863 (1106)
                                .....    ..+...+..++|+|||++|++++  ++.|.+|+.........  ...+...+.++.++| +
T Consensus        74 ----------~~~~~----~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-d  138 (333)
T d1ri6a_          74 ----------TFAAE----SALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP-D  138 (333)
T ss_dssp             ----------EEEEE----EECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT-T
T ss_pred             ----------EEeee----cccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeee-c
Confidence                      00000    01445577899999999999987  57899998876554333  345667788999999 7


Q ss_pred             CceEEEee-CCCcEEEEEeecceEEE------EecCcccCeeEEEEecCCCEEEEEc-CCCcEEEEeCCCcccccce--e
Q 001295          864 NNIIAIGM-DDSSIQIYNVRVDEVKS------KLKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQKNR--F  933 (1106)
Q Consensus       864 ~~~la~g~-~dg~v~iwd~~~~~~~~------~l~~h~~~V~~l~~s~d~~~l~s~s-~Dg~i~vwd~~~~~~~~~~--~  933 (1106)
                      ++++++++ .+..|.+|+........      ....+......++|++++.+++... ..+...+|++.........  .
T Consensus       139 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  218 (333)
T d1ri6a_         139 NRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQT  218 (333)
T ss_dssp             SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEE
T ss_pred             ceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeee
Confidence            77766665 45579999987643221      1123445568899999998876554 5567888886553322111  1


Q ss_pred             ecccCCCCCCCCCCceEEEcCCCcEEEEE--eCCeEEEEecCCceEeeecc-cCCCCCCeeEEEECCCCCEEEEEE-cCC
Q 001295          934 LQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLECVKQWV-PRESSAPITHATFSCDSQLVYACF-LDA 1009 (1106)
Q Consensus       934 ~~~~~~~~~~~~~i~~~~~s~dg~~l~~~--~d~~v~i~d~~~~~~~~~~~-~~~h~~~v~~l~~s~d~~~l~t~s-~Dg 1009 (1106)
                      ................+++++|++++.+.  .++.+.+|++.......... ...+...+.+++|+|||++|++++ .++
T Consensus       219 ~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~  298 (333)
T d1ri6a_         219 LDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSH  298 (333)
T ss_dssp             EECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTC
T ss_pred             eeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCC
Confidence            11111112222345678999999988874  56789999887654332221 112345678999999999987765 468


Q ss_pred             eEEEEE--cCCceeE
Q 001295         1010 TVCVFS--AANLKLR 1022 (1106)
Q Consensus      1010 ~i~vwd--~~~~~~~ 1022 (1106)
                      +|++|+  .++|++.
T Consensus       299 ~v~v~~id~~tG~l~  313 (333)
T d1ri6a_         299 HISVYEIVGEQGLLH  313 (333)
T ss_dssp             EEEEEEEETTTTEEE
T ss_pred             eEEEEEEECCCCcEE
Confidence            999994  5677653

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=8.1e-17  Score=175.49  Aligned_cols=286  Identities=12%  Similarity=0.146  Sum_probs=187.5

Q ss_pred             EEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEE
Q 001295          758 ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISL  835 (1106)
Q Consensus       758 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s--dg~i~v  835 (1106)
                      +++++.++.|++|++...                     +.+.....  ..+...+..++|+|||++|+++.  |+.|++
T Consensus         7 ~v~~~~~~~I~v~~~~~~---------------------~~l~~~~~--~~~~~~v~~la~spDG~~L~v~~~~d~~i~~   63 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHE---------------------GALTLTQV--VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLA   63 (333)
T ss_dssp             EEEEGGGTEEEEEEECTT---------------------SCEEEEEE--EECSSCCCCEEECTTSSEEEEEETTTTEEEE
T ss_pred             EEECCCCCcEEEEEEcCC---------------------CCeEEEEE--EcCCCCEeEEEEeCCCCEEEEEECCCCeEEE
Confidence            466667899999998631                     11111001  12678899999999999997665  799999


Q ss_pred             EEcCCCceeeee---cCCCCCeeEEEEecCCCceEEEeeC-CCcEEEEEeecceEEE--EecCcccCeeEEEEecCCCEE
Q 001295          836 FNMMTFKTMATF---MPPPPAATFLAFHPQDNNIIAIGMD-DSSIQIYNVRVDEVKS--KLKGHSKRITGLAFSHALNVL  909 (1106)
Q Consensus       836 wd~~~~~~~~~~---~~~~~~v~~l~~s~~d~~~la~g~~-dg~v~iwd~~~~~~~~--~l~~h~~~V~~l~~s~d~~~l  909 (1106)
                      |++.......++   ..+...+..++|+| |+++|++++. ++.|.+|+........  ....+...+.++.++||++++
T Consensus        64 ~~i~~~~~~~~~~~~~~~~~~p~~l~~sp-Dg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~  142 (333)
T d1ri6a_          64 YRIAPDDGALTFAAESALPGSLTHISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTL  142 (333)
T ss_dssp             EEECTTTCCEEEEEEEECSSCCSEEEECT-TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEE
T ss_pred             EEEeCCCCcEEEeeecccCCCceEEEEcC-CCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceee
Confidence            999865433332   22445678899999 8888888774 6789999988765443  344577778999999999988


Q ss_pred             EEEcC-CCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE--eCCeEEEEecCCceE----eeecc
Q 001295          910 VSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLEC----VKQWV  982 (1106)
Q Consensus       910 ~s~s~-Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~--~d~~v~i~d~~~~~~----~~~~~  982 (1106)
                      ++++. +..|.+|+.................  .....+..++|++++.+++..  ..+...+|+......    .....
T Consensus       143 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  220 (333)
T d1ri6a_         143 WVPALKQDRICLFTVSDDGHLVAQDPAEVTT--VEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLD  220 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEEEEC--STTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEE
T ss_pred             eccccccceeeEEEeccCCcceeeeceeeee--ecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeee
Confidence            87764 4568999987654322211111111  111245789999999998874  456777877643321    11111


Q ss_pred             ----cCCCCCCeeEEEECCCCCEEEEE-EcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEE
Q 001295          983 ----PRESSAPITHATFSCDSQLVYAC-FLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1057 (1106)
Q Consensus       983 ----~~~h~~~v~~l~~s~d~~~l~t~-s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t 1057 (1106)
                          ..........+++++|+++++.+ ..++.+.+|++........+.  ...+.+     ..|..++|+| ||++|++
T Consensus       221 ~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~~p~~~a~sp-DGk~l~v  292 (333)
T d1ri6a_         221 MMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKE--GFQPTE-----TQPRGFNVDH-SGKYLIA  292 (333)
T ss_dssp             CSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEE--EEEECS-----SSCCCEEECT-TSSEEEE
T ss_pred             eeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEE--EEeCCC-----CCeeEEEEeC-CCCEEEE
Confidence                01224567788999999986654 567899999987654333322  011111     2344799999 7888766


Q ss_pred             Ee-CCCcEEEEeecCCCCccC
Q 001295         1058 GL-SDGGVHVFEPLESEGKWG 1077 (1106)
Q Consensus      1058 ~~-~Dg~v~vW~~~~~~~~~~ 1077 (1106)
                      ++ .++.|.+|++....+.+.
T Consensus       293 a~~~~~~v~v~~id~~tG~l~  313 (333)
T d1ri6a_         293 AGQKSHHISVYEIVGEQGLLH  313 (333)
T ss_dssp             ECTTTCEEEEEEEETTTTEEE
T ss_pred             EECCCCeEEEEEEECCCCcEE
Confidence            55 568999998866554443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.72  E-value=2.8e-16  Score=172.96  Aligned_cols=201  Identities=12%  Similarity=0.062  Sum_probs=137.7

Q ss_pred             eEEEEecCCCEEEEEe---CCeEEEEEcCCCceeeeecCCCC-------CeeEEEEecCCCceEEE-eeCCCcEEEEEee
Q 001295          814 PCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPP-------AATFLAFHPQDNNIIAI-GMDDSSIQIYNVR  882 (1106)
Q Consensus       814 ~~l~~s~~~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~-------~v~~l~~s~~d~~~la~-g~~dg~v~iwd~~  882 (1106)
                      ..++|+++++++++++   +..+.+|+..+++.+..+..+..       ....+.+++ |++.++. ...++.+.+++..
T Consensus       109 ~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-dg~~~~v~~~~~~~~~~~~~~  187 (355)
T d2bbkh_         109 WMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCR-DGSLAKVAFGTEGTPEITHTE  187 (355)
T ss_dssp             GGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEET-TSCEEEEECCSSSCCEEEECC
T ss_pred             ceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcC-CCCEEEEEecCCCeEEEEecc
Confidence            4467888888777664   46788899888887777654432       223455666 4433332 3334445554443


Q ss_pred             cceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCC-------CCCCCCceEEEcCC
Q 001295          883 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT-------PTAQSDTRVQFHQD  955 (1106)
Q Consensus       883 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~s~d  955 (1106)
                      ...     ..+...+....+++++..++.++.++.+.+|++..++....   .....+.       ........++++++
T Consensus       188 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~p~~~~~~~~~~d  259 (355)
T d2bbkh_         188 VFH-----PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFL---PAVEALTEAERADGWRPGGWQQVAYHRA  259 (355)
T ss_dssp             CCS-----CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEEC---CCEESSCHHHHHTTEEECSSSCEEEETT
T ss_pred             ccc-----ceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEE---eccCCcccceEeeeeeccceEEEEEeCC
Confidence            322     23455567788899999999999999999999988653221   1111110       00123467999999


Q ss_pred             CcEEEEE-eC----------CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCC--EEEEEEcCCeEEEEEcCCceeE
Q 001295          956 QIHFLVV-HE----------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ--LVYACFLDATVCVFSAANLKLR 1022 (1106)
Q Consensus       956 g~~l~~~-~d----------~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~--~l~t~s~Dg~i~vwd~~~~~~~ 1022 (1106)
                      +..+++. .+          ..|.+||..+++.+..+..   ...+.+++|+|||+  ++++++.|++|+|||+.+++.+
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~---~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~  336 (355)
T d2bbkh_         260 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM---GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL  336 (355)
T ss_dssp             TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE---EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred             CCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC---CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEE
Confidence            9988873 22          3699999999999888753   45689999999998  3466777999999999999999


Q ss_pred             EeeC
Q 001295         1023 CRIN 1026 (1106)
Q Consensus      1023 ~~~~ 1026 (1106)
                      ..+.
T Consensus       337 ~~i~  340 (355)
T d2bbkh_         337 RSVN  340 (355)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            8886

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.58  E-value=1.9e-13  Score=156.18  Aligned_cols=119  Identities=17%  Similarity=0.168  Sum_probs=94.1

Q ss_pred             EEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeC--
Q 001295          355 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS--  432 (1106)
Q Consensus       355 ~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~--  432 (1106)
                      .+.|.+++++ +.  ..|+.|.+||+.+++....              +....+..|...|.++.|||||++||.++.  
T Consensus        21 ~~~W~~d~~~-~~--~~~~~~~~~~~~t~~~~~~--------------~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~   83 (470)
T d2bgra1          21 SLRWISDHEY-LY--KQENNILVFNAEYGNSSVF--------------LENSTFDEFGHSINDYSISPDGQFILLEYNYV   83 (470)
T ss_dssp             CCEECSSSEE-EE--ESSSCEEEEETTTCCEEEE--------------ECTTTTTTSSSCCCEEEECTTSSEEEEEEEEE
T ss_pred             CCEeCCCCEE-EE--EcCCcEEEEECCCCCEEEE--------------EchhhhhhccCccceeEECCCCCEEEEEECCc
Confidence            4679999985 55  4578999999999986532              112246778889999999999999998853  


Q ss_pred             -------CCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEE
Q 001295          433 -------RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF  497 (1106)
Q Consensus       433 -------d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  497 (1106)
                             ++.+.|||+.+++..    .+..|...+..+.|||||+  .+|.. .++.+++|+..+++..+..
T Consensus        84 ~~~r~s~~~~~~l~d~~~~~~~----~l~~~~~~~~~~~~SPDG~--~ia~~-~~~~l~~~~~~~g~~~~~t  148 (470)
T d2bgra1          84 KQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGH--KLAYV-WNNDIYVKIEPNLPSYRIT  148 (470)
T ss_dssp             ECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTT--CEEEE-ETTEEEEESSTTSCCEECC
T ss_pred             ceeeeccCceEEEEECCCCccc----ccccCCccccccccccCcc--eeeEe-ecccceEEECCCCceeeee
Confidence                   467899999998744    3778899999999999999  45554 4678999999988876544

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.53  E-value=1.6e-13  Score=151.22  Aligned_cols=240  Identities=10%  Similarity=0.006  Sum_probs=159.5

Q ss_pred             EEEEecCCCEEEEEe-----------CCeEEEEEcCCCceeeeecCCCC-------CeeEEEEecCCCceEEEee-CCCc
Q 001295          815 CFALSKNDSYVMSAS-----------GGKISLFNMMTFKTMATFMPPPP-------AATFLAFHPQDNNIIAIGM-DDSS  875 (1106)
Q Consensus       815 ~l~~s~~~~~l~~~s-----------dg~i~vwd~~~~~~~~~~~~~~~-------~v~~l~~s~~d~~~la~g~-~dg~  875 (1106)
                      .++++|||++|++.+           |+.|++||..+++.+..+..+..       ....++||| ||++|+++. .++.
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~Sp-DGk~l~va~~~~~~  147 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA-SSACLLFFLFGSSA  147 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT-TSSCEEEEECSSSC
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECC-CCCEEEEEeCCCCe
Confidence            589999999998764           45699999999998887654322       234689999 888887765 6799


Q ss_pred             EEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCC
Q 001295          876 IQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD  955 (1106)
Q Consensus       876 v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~d  955 (1106)
                      +.+||+.+++.+..+..+.....   +......++..+.||++.+|++............  .........+....+.++
T Consensus       148 v~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  222 (368)
T d1mdah_         148 AAGLSVPGASDDQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGA--QCTGAQNCSSQAAQANYP  222 (368)
T ss_dssp             EEEEEETTTEEEEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCSSCCCCEECCC--CSCTTSCBCSCCEEETTT
T ss_pred             EEEEECCCCcEeEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecCCceeeeeeec--ccccccccceeecccccC
Confidence            99999999999888876654321   1223456666777888888877664432211111  111111234567788888


Q ss_pred             CcEEEEEeCCeEEEEecCCceEeeecccCCC----------CCCeeEEEECCCCCEEEEEEcC---------CeEEEEEc
Q 001295          956 QIHFLVVHETQLAIFETTKLECVKQWVPRES----------SAPITHATFSCDSQLVYACFLD---------ATVCVFSA 1016 (1106)
Q Consensus       956 g~~l~~~~d~~v~i~d~~~~~~~~~~~~~~h----------~~~v~~l~~s~d~~~l~t~s~D---------g~i~vwd~ 1016 (1106)
                      +..+.. ..+.+.+++..............+          ......+++++++..++....+         ..|.+||.
T Consensus       223 g~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~  301 (368)
T d1mdah_         223 GMLVWA-VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTA  301 (368)
T ss_dssp             TEEEEC-BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEES
T ss_pred             cEEEEe-cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEEC
Confidence            776554 345566666655443322211111          1223458899999887665433         35999999


Q ss_pred             CCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCC--EEEEEeCCCcEEEEeecCCC
Q 001295         1017 ANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN--EFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus      1017 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~--~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
                      .+++.+..+.      .+     -.+..++|+| ||+  +++++..|+.|++||..+++
T Consensus       302 ~t~~~~~~~~------~~-----~~~~~~a~sp-DG~~~ly~s~~~~~~v~v~D~~tgk  348 (368)
T d1mdah_         302 SVGQTSGPIS------NG-----HDSDAIIAAQ-DGASDNYANSAGTEVLDIYDAASDQ  348 (368)
T ss_dssp             SSCCEEECCE------EE-----EEECEEEECC-SSSCEEEEEETTTTEEEEEESSSCE
T ss_pred             CCCcEeEEec------CC-----CceeEEEECC-CCCEEEEEEeCCCCeEEEEECCCCC
Confidence            9999887765      11     1233799999 675  35677789999999999998

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.50  E-value=5.1e-12  Score=144.06  Aligned_cols=150  Identities=11%  Similarity=0.096  Sum_probs=105.4

Q ss_pred             eEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEec-----cCCCeEEEeccccCCceEEEEEec---------CCe
Q 001295          461 NDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG-----HEAPVYSVCPHHKENIQFIFSTAL---------DGK  526 (1106)
Q Consensus       461 ~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~~~l~s~~~---------dg~  526 (1106)
                      ..+.|.+|+.  ++..  .|+.+.+||+.+++....+..     |...|.++.|+|  ||++|+.++.         ++.
T Consensus        20 ~~~~W~~d~~--~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~Sp--Dg~~i~~~~~~~~~~r~s~~~~   93 (470)
T d2bgra1          20 YSLRWISDHE--YLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP--DGQFILLEYNYVKQWRHSYTAS   93 (470)
T ss_dssp             CCCEECSSSE--EEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECT--TSSEEEEEEEEEECSSSCEEEE
T ss_pred             cCCEeCCCCE--EEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECC--CCCEEEEEECCcceeeeccCce
Confidence            4578999997  5553  478899999999998766554     456788988865  5577887743         567


Q ss_pred             EEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEcc
Q 001295          527 IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA  606 (1106)
Q Consensus       527 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  606 (1106)
                      +.+||+.+++ ...+..+...+....|||||+                     .++. ..++.+++|+..+++.......
T Consensus        94 ~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~---------------------~ia~-~~~~~l~~~~~~~g~~~~~t~~  150 (470)
T d2bgra1          94 YDIYDLNKRQ-LITEERIPNNTQWVTWSPVGH---------------------KLAY-VWNNDIYVKIEPNLPSYRITWT  150 (470)
T ss_dssp             EEEEETTTTE-ECCSSCCCTTEEEEEECSSTT---------------------CEEE-EETTEEEEESSTTSCCEECCSC
T ss_pred             EEEEECCCCc-ccccccCCccccccccccCcc---------------------eeeE-eecccceEEECCCCceeeeeec
Confidence            8999998754 444555666677777777776                     4555 4567899999998876654432


Q ss_pred             CC----------------CCCCcCeEEEccCCCEEEEEeCCCc-EEEEEc
Q 001295          607 DG----------------GLPASPRIRFNKDGCLLAVSTNDNG-IKILAT  639 (1106)
Q Consensus       607 ~~----------------~~~~v~~v~~s~~~~~l~~~~~dg~-i~iwd~  639 (1106)
                      ..                .......+.|||||++|+....|.+ +..|.+
T Consensus       151 ~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         151 GKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             CBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred             cCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEE
Confidence            11                1123456889999999999876544 555544

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.49  E-value=2.6e-14  Score=154.56  Aligned_cols=249  Identities=10%  Similarity=-0.000  Sum_probs=154.5

Q ss_pred             CCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcC--------Ccccc-----ccccCCCCcCeEEEEEccCCCEE
Q 001295          361 VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGAC--------SMPLQ-----AALVKDPGVSVNRVIWSPDGSLF  427 (1106)
Q Consensus       361 ~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~--------~~~~~-----~~~~~~h~~~V~~l~~spdg~~l  427 (1106)
                      |+-|.+++|+.+|.|.||++.+++.+.+..  ++.....        ...+.     ...-..|.-...+..++|||++|
T Consensus         9 De~y~f~Sgg~sG~V~V~dlpS~r~l~~Ip--Vfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~l   86 (441)
T d1qnia2           9 DEYYGFWSGGHQGEVRVLGVPSMRELMRIP--VFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYL   86 (441)
T ss_dssp             CSEEEEEECBTTCCEEEEEETTTEEEEEEC--SSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEE
T ss_pred             CCEEEEEeCCCCCcEEEEeCCCCcEEEEEE--eEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEE
Confidence            345678899999999999999998886532  2221100        00000     00012244456677778999999


Q ss_pred             EEE-eCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCC-----------------cEEEEeCC
Q 001295          428 GVA-YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK-----------------TIKVWDAT  489 (1106)
Q Consensus       428 as~-~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~-----------------~i~iwd~~  489 (1106)
                      .+. ..+..|.++|+.+++..+.+ .+ .+...+..++|+||++..+++..+.+.                 .+..+|..
T Consensus        87 fV~d~~~~rVavIDl~t~k~~~ii-~i-P~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~  164 (441)
T d1qnia2          87 FINDKANTRVARIRLDIMKTDKIT-HI-PNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAE  164 (441)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEE-EC-TTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETT
T ss_pred             EEEcCCCCEEEEEECCCCcEeeEE-ec-CCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCc
Confidence            666 46789999999998865532 12 356789999999999986666555432                 23558888


Q ss_pred             CCceeEEEeccCCCeEEEeccccCCceEEEEEecCC-eEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccc
Q 001295          490 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDG-KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS  568 (1106)
Q Consensus       490 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~  568 (1106)
                      +.+...++... +....+.++  ++|+++++.+.+. .+..++..+......       +....               .
T Consensus       165 t~~v~~qI~v~-~~p~~v~~s--pdGk~a~vt~~nse~~~~id~~t~~~~d~-------i~v~n---------------~  219 (441)
T d1qnia2         165 TMDVAWQVIVD-GNLDNTDAD--YTGKYATSTCYNSERAVDLAGTMRNDRDW-------VVVFN---------------V  219 (441)
T ss_dssp             TCSEEEEEEES-SCCCCEEEC--SSSSEEEEEESCTTCCSSHHHHTCSSBCE-------EEEEE---------------H
T ss_pred             cceeeEEEecC-CCccceEEC--CCCCEEEEEecCCCceEEEeccCcceEEE-------EEeCC---------------c
Confidence            87777766543 345566664  4556777766543 232233222211111       10000               0


Q ss_pred             eeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEE-EeCCCcEEEEEccCC
Q 001295          569 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAV-STNDNGIKILATSDG  642 (1106)
Q Consensus       569 i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~-~~~dg~i~iwd~~~~  642 (1106)
                      -..+.+.++|+++.. +.++.+.+++....+.+..+.....   ...+.++|||+++++ +..++++.+||+.+.
T Consensus       220 p~~~~~~~dGk~~~v-~~~~v~vvd~~~~~~v~~~IPvgks---PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~  290 (441)
T d1qnia2         220 ERIAAAVKAGNFKTI-GDSKVPVVDGRGESEFTRYIPVPKN---PHGLNTSPDGKYFIANGKLSPTVSVIAIDKL  290 (441)
T ss_dssp             HHHHHHHHTTCCBCC-TTCCCCEEECSSSCSSEEEECCBSS---CCCEEECTTSCEEEEECTTSSBEEEEEGGGH
T ss_pred             cceEEEecCCCEEEe-CCCCcEEEEcccCCceEEEEeCCCC---ccCceECCCCCEEEEeCCcCCcEEEEEeehh
Confidence            011223445554443 4467788888777777777765543   577999999998765 567899999998653

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.48  E-value=4.2e-13  Score=147.71  Aligned_cols=270  Identities=10%  Similarity=-0.019  Sum_probs=172.9

Q ss_pred             CCCCcEEEEEecCCCeEEEE--EeccCc--EEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCC
Q 001295          349 QGSSPMSMDFHPVQQTLLLV--GTNVGD--IGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  424 (1106)
Q Consensus       349 h~~~v~~~~~sp~g~~llat--g~~dg~--i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg  424 (1106)
                      +......++.+++++...++  ...+|+  |.+||..+++.+..                   ..++...  .++|+|||
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~-------------------~~~~~~~--~~a~spDg   76 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGH-------------------SLGAFLS--LAVAGHSG   76 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEE-------------------EEECTTC--EEEECTTS
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEE-------------------EeCCCCC--cceECCCC
Confidence            45566667788888853333  344454  66779998887764                   2233333  58999999


Q ss_pred             CEEEEEe----------CCCeEEEEEccCCceeeeeeeecc-----ccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCC
Q 001295          425 SLFGVAY----------SRHIVQIYSYHGGDEVRQHLEIDA-----HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT  489 (1106)
Q Consensus       425 ~~las~~----------~d~~v~iwd~~~~~~~~~~~~l~~-----h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~  489 (1106)
                      ++|++.+          .|+.|.+||..+++.+..+. +..     .......++|+|||+. ++++...++.+.+||+.
T Consensus        77 ~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~-~p~~~~~~~g~~p~~~a~SpDGk~-l~va~~~~~~v~~~d~~  154 (368)
T d1mdah_          77 SDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSAC-LLFFLFGSSAAAGLSVP  154 (368)
T ss_dssp             SCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSSC-EEEEECSSSCEEEEEET
T ss_pred             CEEEEEcccCccccccccCCeEEEEECCCCcEeeeec-CCccceecccCCccceEECCCCCE-EEEEeCCCCeEEEEECC
Confidence            9998864          36789999999988765331 111     1122357999999996 34444568999999999


Q ss_pred             CCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEee------CCCCeeEEEEEecCCCeEEEe
Q 001295          490 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE------APGRWCTTMAYSADGTRTYQG  563 (1106)
Q Consensus       490 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------~~~~~v~~~~~s~~~~~~~~~  563 (1106)
                      +++.+..+..+......    +... ..++..+.||.+.+|++..........      .+...+....+.+++..++..
T Consensus       155 ~~~~~~~~~~~~~~~~~----~~~~-~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  229 (368)
T d1mdah_         155 GASDDQLTKSASCFHIH----PGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV  229 (368)
T ss_dssp             TTEEEEEEECSSCCCCE----EEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB
T ss_pred             CCcEeEEeeccCcceEc----cCCC-ceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec
Confidence            99999888766544221    2222 467777888888888876554432211      111112222333332211100


Q ss_pred             -------------------------------eeccceeEEEEcCCCCEEEEEECC---------CeEEEEECCCcceeEE
Q 001295          564 -------------------------------FRKRSLGVVQFDTTKNRFLAAGDD---------FSIKFWDMDSVQLLTS  603 (1106)
Q Consensus       564 -------------------------------~~~~~i~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~  603 (1106)
                                                     ........+.+++++..++....+         ..|.+||..+++.+..
T Consensus       230 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~  309 (368)
T d1mdah_         230 ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGP  309 (368)
T ss_dssp             SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEEC
T ss_pred             CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEE
Confidence                                           001112346788888877664322         3699999999998887


Q ss_pred             EccCCCCCCcCeEEEccCCC--EEEEEeCCCcEEEEEccCCchhhhhhc
Q 001295          604 IDADGGLPASPRIRFNKDGC--LLAVSTNDNGIKILATSDGIRLLRTFE  650 (1106)
Q Consensus       604 ~~~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~  650 (1106)
                      +....   .+.+++|+|||+  +++++..++.|++||..++ +.++.+.
T Consensus       310 ~~~~~---~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tg-k~~~~i~  354 (368)
T d1mdah_         310 ISNGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD-QDQSSVE  354 (368)
T ss_dssp             CEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSC-EEEEECC
T ss_pred             ecCCC---ceeEEEECCCCCEEEEEEeCCCCeEEEEECCCC-CEEEEEE
Confidence            76432   478899999997  3456677899999999998 4555443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.44  E-value=2.7e-13  Score=146.60  Aligned_cols=318  Identities=11%  Similarity=0.047  Sum_probs=194.8

Q ss_pred             EEEEeCCCeEEEEEccCCceeeeeeeec---------------------------cccCCeeEEEEcCCCCceEEEEecC
Q 001295          427 FGVAYSRHIVQIYSYHGGDEVRQHLEID---------------------------AHVGGVNDIAFSHPNKQLCVITCGD  479 (1106)
Q Consensus       427 las~~~d~~v~iwd~~~~~~~~~~~~l~---------------------------~h~~~V~~~~~s~d~~~~~l~s~~~  479 (1106)
                      ++|++.+|.|+||++.+++.++.+..+.                           .|........++|||++ ++++...
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~-lfV~d~~   92 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKY-LFINDKA   92 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEE-EEEEETT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCE-EEEEcCC
Confidence            5677889999999999988776544332                           12233455667899996 5677778


Q ss_pred             CCcEEEEeCCCCceeEEEe-ccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCC
Q 001295          480 DKTIKVWDATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT  558 (1106)
Q Consensus       480 d~~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~  558 (1106)
                      +..|.++|+.++++...+. .+...+..++|+++++..+++..+.+..-...|-...                  ..+. 
T Consensus        93 ~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~------------------~~~~-  153 (441)
T d1qnia2          93 NTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDF------------------SLDN-  153 (441)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCC------------------CGGG-
T ss_pred             CCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccccc------------------cccc-
Confidence            9999999999999888775 3567788899877665445555544332111110000                  0000 


Q ss_pred             eEEEeeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCc-EEEE
Q 001295          559 RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG-IKIL  637 (1106)
Q Consensus       559 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~-i~iw  637 (1106)
                                           .      ...+..+|..+.+....+...+.   ...+.|+|+|+++++.+.+.. +..+
T Consensus       154 ---------------------~------~~~~~~iD~~t~~v~~qI~v~~~---p~~v~~spdGk~a~vt~~nse~~~~i  203 (441)
T d1qnia2         154 ---------------------S------YTMFTAIDAETMDVAWQVIVDGN---LDNTDADYTGKYATSTCYNSERAVDL  203 (441)
T ss_dssp             ---------------------E------EEEEEEEETTTCSEEEEEEESSC---CCCEEECSSSSEEEEEESCTTCCSSH
T ss_pred             ---------------------c------cceEEeecCccceeeEEEecCCC---ccceEECCCCCEEEEEecCCCceEEE
Confidence                                 0      02455678888887777765543   678999999999998876532 2111


Q ss_pred             EccCCchhhhhhcccccccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCc
Q 001295          638 ATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDK  717 (1106)
Q Consensus       638 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~  717 (1106)
                      +..+. ...                                                                     ..
T Consensus       204 d~~t~-~~~---------------------------------------------------------------------d~  213 (441)
T d1qnia2         204 AGTMR-NDR---------------------------------------------------------------------DW  213 (441)
T ss_dssp             HHHTC-SSB---------------------------------------------------------------------CE
T ss_pred             eccCc-ceE---------------------------------------------------------------------EE
Confidence            11111 000                                                                     11


Q ss_pred             eeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCC
Q 001295          718 SKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSG  797 (1106)
Q Consensus       718 i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~  797 (1106)
                      +.+.+..                      ..+.++++|+++.. +.++.+.++...                      ..
T Consensus       214 i~v~n~p----------------------~~~~~~~dGk~~~v-~~~~v~vvd~~~----------------------~~  248 (441)
T d1qnia2         214 VVVFNVE----------------------RIAAAVKAGNFKTI-GDSKVPVVDGRG----------------------ES  248 (441)
T ss_dssp             EEEEEHH----------------------HHHHHHHTTCCBCC-TTCCCCEEECSS----------------------SC
T ss_pred             EEeCCcc----------------------ceEEEecCCCEEEe-CCCCcEEEEccc----------------------CC
Confidence            1111110                      11234566664433 334444444321                      11


Q ss_pred             CccccccCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCCcee--------eeecCC---CCCeeEEEEecCCC
Q 001295          798 IMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTM--------ATFMPP---PPAATFLAFHPQDN  864 (1106)
Q Consensus       798 ~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~--------~~~~~~---~~~v~~l~~s~~d~  864 (1106)
                      ..+.. ++   -......+.++|||+++++++  +++|.|||+++....        ..+.++   .-.....+|++ ++
T Consensus       249 ~v~~~-IP---vgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~-~g  323 (441)
T d1qnia2         249 EFTRY-IP---VPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDG-RG  323 (441)
T ss_dssp             SSEEE-EC---CBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECS-SS
T ss_pred             ceEEE-Ee---CCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecC-Cc
Confidence            11111 11   123356799999999988776  799999998753211        111111   11235568999 88


Q ss_pred             ceEEEeeCCCcEEEEEeec----------ceEEEEe-----cCcccCeeEEEEecCCCEEEEEcC
Q 001295          865 NIIAIGMDDSSIQIYNVRV----------DEVKSKL-----KGHSKRITGLAFSHALNVLVSSGA  914 (1106)
Q Consensus       865 ~~la~g~~dg~v~iwd~~~----------~~~~~~l-----~~h~~~V~~l~~s~d~~~l~s~s~  914 (1106)
                      ..+.+.+-|.+|..|++..          ...+..+     .||...+.+.+++|||++|++++.
T Consensus       324 ~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k  388 (441)
T d1qnia2         324 NAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSK  388 (441)
T ss_dssp             EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEES
T ss_pred             eEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCc
Confidence            8999999999999999852          1244444     578888889999999999999943

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.21  E-value=8.3e-10  Score=119.68  Aligned_cols=254  Identities=9%  Similarity=0.067  Sum_probs=151.4

Q ss_pred             CCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCCc-eeeee-cCCCCCeeEEEEecCCCce--EEEee-CCCcEEEEEeec
Q 001295          809 PEEAVPCFALSKNDSYVMSASGGKISLFNMMTFK-TMATF-MPPPPAATFLAFHPQDNNI--IAIGM-DDSSIQIYNVRV  883 (1106)
Q Consensus       809 ~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~-~~~~~-~~~~~~v~~l~~s~~d~~~--la~g~-~dg~v~iwd~~~  883 (1106)
                      ....+..+++++++++|.+...+.+..|.+.... ..... .........+++++ +++.  ++++. ..++|..+.+..
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~-~~~~~~v~~a~~~~~~v~~~~~~~  116 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECC-CCCEEEEEEecCCCCEEEEeEccC
Confidence            3555678999999999998887888888776422 22211 11233456778888 6663  33332 345666554422


Q ss_pred             -ce------------E---E-EEecCcccCeeEEEEecCCCEEEEEcC-CCcEEEEeCCCccccc-ceeecc-cCCCCCC
Q 001295          884 -DE------------V---K-SKLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDGWEKQK-NRFLQI-PTGRTPT  943 (1106)
Q Consensus       884 -~~------------~---~-~~l~~h~~~V~~l~~s~d~~~l~s~s~-Dg~i~vwd~~~~~~~~-~~~~~~-~~~~~~~  943 (1106)
                       +.            .   . ..-......+.+++|+|||++|++++. ...|.+|++....... ...... ..+    
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g----  192 (365)
T d1jofa_         117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG----  192 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT----
T ss_pred             CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCC----
Confidence             11            0   0 001112234789999999998887754 4468888765422111 111111 112    


Q ss_pred             CCCCceEEEcCCCcEEEEE--eCCeEEEEecCCceEee-----eccc------------CCCCCCeeEEEECCCCCEEEE
Q 001295          944 AQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLECVK-----QWVP------------RESSAPITHATFSCDSQLVYA 1004 (1106)
Q Consensus       944 ~~~i~~~~~s~dg~~l~~~--~d~~v~i~d~~~~~~~~-----~~~~------------~~h~~~v~~l~~s~d~~~l~t 1004 (1106)
                       ...+.++|+|+|+++.+.  .+++|.+|++.......     ....            ..+......+.++|||++|++
T Consensus       193 -~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyv  271 (365)
T d1jofa_         193 -DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFA  271 (365)
T ss_dssp             -CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEE
T ss_pred             -CceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEE
Confidence             356899999999998874  56889999987654221     1110            011223567899999999987


Q ss_pred             EEc------CCeEEEEEcCCceeEEe-eCCCcccCCCCCCCCccceEEEEeCCCCCEEEEE-eCCCcEEEEeecCCC
Q 001295         1005 CFL------DATVCVFSAANLKLRCR-INPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG-LSDGGVHVFEPLESE 1073 (1106)
Q Consensus      1005 ~s~------Dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~-~~Dg~v~vW~~~~~~ 1073 (1106)
                      +..      .+.|..|++.....+.. .........|     .+|..++++|.+|++|+++ ..++.|.+|+++...
T Consensus       272 snr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G-----~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         272 SSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSG-----GHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             EEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCC-----TTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             EcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCC-----CCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence            753      23477888764322221 1111111122     3344799998778876555 577899999987654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.13  E-value=1.8e-08  Score=105.86  Aligned_cols=248  Identities=14%  Similarity=0.085  Sum_probs=163.0

Q ss_pred             CCCCcceeeeccCCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeE
Q 001295          337 EDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN  416 (1106)
Q Consensus       337 ~~~~~~~~~~~~h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~  416 (1106)
                      +..+.+++..+.-...+..++++|||+ |+++...+++|..|+.... ...                    +......+.
T Consensus        14 ~~~~~~v~~~~p~~~~~e~iAv~pdG~-l~vt~~~~~~I~~i~p~g~-~~~--------------------~~~~~~~~~   71 (302)
T d2p4oa1          14 ELAPAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGN-QQI--------------------HATVEGKVS   71 (302)
T ss_dssp             CCCCEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCC-EEE--------------------EEECSSEEE
T ss_pred             cCCcccEEEECCCCCCcCCEEECCCCC-EEEEeCCCCEEEEEeCCCC-EEE--------------------EEcCCCCcc
Confidence            444566666676556799999999999 7888888999988886543 221                    233445799


Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEE
Q 001295          417 RVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI  496 (1106)
Q Consensus       417 ~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~  496 (1106)
                      +++|+|||+++++...++.+.+|+......................+++.+++.  ++++.+.++.+..+|..++.....
T Consensus        72 gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~--~~v~~~~~~~i~~~~~~~~~~~~~  149 (302)
T d2p4oa1          72 GLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSIW  149 (302)
T ss_dssp             EEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEEE
T ss_pred             eEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCC--EEeeccccccceeeeccCCcceeE
Confidence            999999999999988888888888765432221111123455688999999998  788888889999999887754332


Q ss_pred             Eec----------cCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeec
Q 001295          497 FEG----------HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  566 (1106)
Q Consensus       497 ~~~----------h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  566 (1106)
                      +..          .......+.+  +.+ .++++.+..+.|..++...........     +..              ..
T Consensus       150 ~~~~~~~~~~~~~~~~~~ngi~~--~~~-~l~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~--------------~~  207 (302)
T d2p4oa1         150 LEHPMLARSNSESVFPAANGLKR--FGN-FLYVSNTEKMLLLRIPVDSTDKPGEPE-----IFV--------------EQ  207 (302)
T ss_dssp             EECGGGSCSSTTCCSCSEEEEEE--ETT-EEEEEETTTTEEEEEEBCTTSCBCCCE-----EEE--------------ES
T ss_pred             ecCCccceeeccCcccccccccc--cCC-ceeeecCCCCeEEeccccccccccccc-----ccc--------------CC
Confidence            221          1122344443  332 567777788888888876543321110     000              00


Q ss_pred             cceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEE---ccCCCEEEEEeCC
Q 001295          567 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRF---NKDGCLLAVSTND  631 (1106)
Q Consensus       567 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~---s~~~~~l~~~~~d  631 (1106)
                      .....++++++|+++++...++.|..++.. ++..............++++|   ++|++.|++++..
T Consensus       208 ~~pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         208 TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CCCcceEECCCCCEEEEEcCCCcEEEECCC-CCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            122336777777777777788999999875 444444433333345778999   6788888877654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.05  E-value=2.6e-07  Score=99.56  Aligned_cols=161  Identities=13%  Similarity=0.161  Sum_probs=101.5

Q ss_pred             CCeeEEEEecCCCEEEEEe--CCeEEEEEcCCC-cee--eee--cCCCCCeeEEEEecCCCceE-EEeeCCCcEEEEEee
Q 001295          811 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTF-KTM--ATF--MPPPPAATFLAFHPQDNNII-AIGMDDSSIQIYNVR  882 (1106)
Q Consensus       811 ~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~-~~~--~~~--~~~~~~v~~l~~s~~d~~~l-a~g~~dg~v~iwd~~  882 (1106)
                      ..+.+++|+|||+++++++  .+.|.+|+.... ...  ...  .........++|+| +++++ ++...+++|.+|++.
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~p-dg~~~yv~~e~~~~V~v~~~~  223 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEEC
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECC-CCceEEEeccCCCEEEEEEec
Confidence            3477899999999888887  467888876532 221  111  22345689999999 77766 445567899999987


Q ss_pred             cceEE--E---Eec--------------CcccCeeEEEEecCCCEEEEEcC-C-----CcEEEEeCCCcccccce-eecc
Q 001295          883 VDEVK--S---KLK--------------GHSKRITGLAFSHALNVLVSSGA-D-----SQLCVWSSDGWEKQKNR-FLQI  936 (1106)
Q Consensus       883 ~~~~~--~---~l~--------------~h~~~V~~l~~s~d~~~l~s~s~-D-----g~i~vwd~~~~~~~~~~-~~~~  936 (1106)
                      .++..  .   .+.              .+......+.++|||++|+++.. +     +.|..|++......... .+..
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~  303 (365)
T d1jofa_         224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP  303 (365)
T ss_dssp             TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeE
Confidence            65322  1   110              12223557899999999987643 1     23777776653221111 1111


Q ss_pred             cCCCCCCCCCCceEEEcC-CCcEEEEE--eCCeEEEEecCCc
Q 001295          937 PTGRTPTAQSDTRVQFHQ-DQIHFLVV--HETQLAIFETTKL  975 (1106)
Q Consensus       937 ~~~~~~~~~~i~~~~~s~-dg~~l~~~--~d~~v~i~d~~~~  975 (1106)
                      ....   ......++|+| +|++|+++  .++.|.+|++...
T Consensus       304 ~~~~---G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         304 TPTS---GGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             CSSC---CTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EEcC---CCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            1111   12457899998 89988885  6789999987543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.97  E-value=2.3e-07  Score=95.87  Aligned_cols=244  Identities=12%  Similarity=0.135  Sum_probs=163.4

Q ss_pred             ceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCC-
Q 001295          745 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS-  823 (1106)
Q Consensus       745 ~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~-  823 (1106)
                      ....++++++++.+++-..++.|++|+.+.       ..+..     +.. .+.       ..........+++..+.. 
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G-------~~~~~-----~~~-~~~-------~~~~~~~p~~~~~~~~~~~   83 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEG-------RFKFQ-----FGE-CGK-------RDSQLLYPNRVAVVRNSGD   83 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTTS-------CEEEE-----ECC-BSS-------STTCBSSEEEEEEETTTTE
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCCC-------CEEEE-----ecc-cCC-------Ccccccccccccccccccc
Confidence            457899999999777766788899887542       11100     000 000       001222345566665544 


Q ss_pred             EEEEEe--CCeEEEEEcCCCceeeeec-CCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEe--cCcccCee
Q 001295          824 YVMSAS--GGKISLFNMMTFKTMATFM-PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL--KGHSKRIT  898 (1106)
Q Consensus       824 ~l~~~s--dg~i~vwd~~~~~~~~~~~-~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l--~~h~~~V~  898 (1106)
                      ++++..  ++.|..++.. +.....+. ........+++.+ +++++++....+.+.+++. +++.+..+  ..+.....
T Consensus        84 ~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~  160 (279)
T d1q7fa_          84 IIVTERSPTHQIQIYNQY-GQFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPN  160 (279)
T ss_dssp             EEEEECGGGCEEEEECTT-SCEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEE
T ss_pred             cceeccCCcccccccccc-ccceeecCCCcccccceecccc-CCcEEEEeeccceeeEecc-CCceeecccccccccccc
Confidence            444443  4678888764 45555553 3345678899998 7888888777788888884 45666655  34667788


Q ss_pred             EEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE--eCCeEEEEecCCce
Q 001295          899 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLE  976 (1106)
Q Consensus       899 ~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~--~d~~v~i~d~~~~~  976 (1106)
                      .+++.+++..+++....+.|++|+.....      +.... ..........+++.++|+.+++-  .++.|.+|+. +++
T Consensus       161 ~i~~d~~g~i~v~d~~~~~V~~~d~~G~~------~~~~g-~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~  232 (279)
T d1q7fa_         161 GVVVNDKQEIFISDNRAHCVKVFNYEGQY------LRQIG-GEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQ  232 (279)
T ss_dssp             EEEECSSSEEEEEEGGGTEEEEEETTCCE------EEEES-CTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSC
T ss_pred             eeeeccceeEEeeeccccceeeeecCCce------eeeec-ccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCC
Confidence            99999999999999999999999976521      11111 11111356889999999987773  3457999985 577


Q ss_pred             EeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCce
Q 001295          977 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1020 (1106)
Q Consensus       977 ~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~ 1020 (1106)
                      .+..+...........|++.+||.+++ ++.+..|++|......
T Consensus       233 ~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         233 LISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             EEEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSCCC
T ss_pred             EEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeeec
Confidence            777766544455789999999997555 5679999999988764

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.97  E-value=6.1e-08  Score=101.73  Aligned_cols=238  Identities=9%  Similarity=0.025  Sum_probs=151.3

Q ss_pred             CCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecce-EE
Q 001295          810 EEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE-VK  887 (1106)
Q Consensus       810 ~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~-~~  887 (1106)
                      ...+..++++|||+++++.. +++|..|+... + ...+......+.+++|++ +++++++...++.+..|+..... ..
T Consensus        27 ~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~  103 (302)
T d2p4oa1          27 NTFLENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTV  103 (302)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred             CCCcCCEEECCCCCEEEEeCCCCEEEEEeCCC-C-EEEEEcCCCCcceEEEcC-CCCeEEEecCCceEEEEEecccccce
Confidence            34688999999999988887 78898888654 3 333444567799999999 88999999889999998876532 11


Q ss_pred             EEe--cCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeec--ccCCCCCCCCCCceEEEcCCCcEEEE--
Q 001295          888 SKL--KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQ--IPTGRTPTAQSDTRVQFHQDQIHFLV--  961 (1106)
Q Consensus       888 ~~l--~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~s~dg~~l~~--  961 (1106)
                      ..+  .......+.+++.++++++++.+.++.+..++...+.......-.  ..............+.++  +..+..  
T Consensus       104 ~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~  181 (302)
T d2p4oa1         104 ETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSN  181 (302)
T ss_dssp             EEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEE
T ss_pred             eeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCceeeec
Confidence            122  224456789999999999999998998888887765422111100  000111111123345554  344444  


Q ss_pred             EeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCcc
Q 001295          962 VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVH 1041 (1106)
Q Consensus       962 ~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 1041 (1106)
                      ...+.|..++..............+......++|++||++.++...++.|..++... +......    ..    .....
T Consensus       182 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G-~~~~~~~----~~----~~~~~  252 (302)
T d2p4oa1         182 TEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR-STTIIAQ----AE----QGVIG  252 (302)
T ss_dssp             TTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTC-CEEEEEC----GG----GTCTT
T ss_pred             CCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCC-CEEEEEe----cC----CCCCC
Confidence            467888888876654332221111234567899999999888888889999998654 3322222    11    11134


Q ss_pred             ceEEEEeC--CCCCEEEEEeCC
Q 001295         1042 PLVIAAHP--QEPNEFALGLSD 1061 (1106)
Q Consensus      1042 ~~~~~~~~--~d~~~l~t~~~D 1061 (1106)
                      +..++|..  .|++.|..++..
T Consensus       253 pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         253 STAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             EEEEEECCSTTTTTEEEEEECT
T ss_pred             ceEEEEcCCCCCCCEEEEECCC
Confidence            56899942  267777665543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.95  E-value=1.2e-07  Score=96.80  Aligned_cols=240  Identities=10%  Similarity=0.044  Sum_probs=155.9

Q ss_pred             CCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceE
Q 001295          809 PEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV  886 (1106)
Q Consensus       809 ~~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~  886 (1106)
                      +......++++++|...++..  .+.+..++...................+++++ +++++++....+.+++++-.+...
T Consensus        12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~-~g~i~v~d~~~~~i~~~~~~~~~~   90 (260)
T d1rwia_          12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQT   90 (260)
T ss_dssp             SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECT-TCCEEEEETTTEEEEECTTCSCCE
T ss_pred             CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcC-CCCEEEeeeeeceeeeeeecccee
Confidence            455678999999999776654  47777777654433322222234567899999 888888777777777766555554


Q ss_pred             EEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-EeCC
Q 001295          887 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHET  965 (1106)
Q Consensus       887 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~d~  965 (1106)
                      +....+ .....++++.++++++++-..+..+..++......    ......+.    .....++++++|+.+++ ..++
T Consensus        91 ~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~----~~~~~~~~----~~p~~i~~~~~g~~~v~~~~~~  161 (260)
T d1rwia_          91 VLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ----TVLPFTGL----NDPDGVAVDNSGNVYVTDTDNN  161 (260)
T ss_dssp             ECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSC----EECCCCSC----CSCCEEEECTTCCEEEEEGGGT
T ss_pred             eeeeee-eeecccccccccceeEeecccccccccccccccee----eeeeeccc----CCcceeeecCCCCEeeeccccc
Confidence            433332 34578999999999888877777777777655321    11111111    24578999999998777 4678


Q ss_pred             eEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEE
Q 001295          966 QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVI 1045 (1106)
Q Consensus       966 ~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 1045 (1106)
                      .|..++...........  ........|++.++|.++++....+.|..++....... .+.      .   ...-.|..+
T Consensus       162 ~i~~~d~~~~~~~~~~~--~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~-~~~------~---~~~~~P~~i  229 (260)
T d1rwia_         162 RVVKLEAESNNQVVLPF--TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST-VLP------F---TGLNTPLAV  229 (260)
T ss_dssp             EEEEECTTTCCEEECCC--SSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCE-ECC------C---CSCCCEEEE
T ss_pred             cccccccccceeeeeec--cccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEE-EEc------c---CCCCCeEEE
Confidence            89999987654433221  33456789999999998888877888888876554322 111      0   111245689


Q ss_pred             EEeCCCCCEEEEEeCCCcEEEEeecCCC
Q 001295         1046 AAHPQEPNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus      1046 ~~~~~d~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
                      ++++ +|+++++-..++  +|+.+.+-+
T Consensus       230 ~~d~-~g~l~vad~~~~--rI~~i~~~~  254 (260)
T d1rwia_         230 AVDS-DRTVYVADRGND--RVVKLTSLE  254 (260)
T ss_dssp             EECT-TCCEEEEEGGGT--EEEEECCCG
T ss_pred             EEeC-CCCEEEEECCCC--EEEEEeCCC
Confidence            9998 678887766666  455555444

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.92  E-value=3.7e-07  Score=94.22  Aligned_cols=241  Identities=11%  Similarity=0.117  Sum_probs=163.3

Q ss_pred             CeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecC------CCCCeeEEEEecCCCceEEE-eeCCCcEEEEEeec
Q 001295          812 AVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP------PPPAATFLAFHPQDNNIIAI-GMDDSSIQIYNVRV  883 (1106)
Q Consensus       812 ~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~------~~~~v~~l~~s~~d~~~la~-g~~dg~v~iwd~~~  883 (1106)
                      ....++++++|+++++-. ++.|++||.+ ++.+..+..      .......+++..+.+.++++ .+.++.|.+++. .
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~  101 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-Y  101 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-T
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-c
Confidence            468999999999777655 6889999965 566655532      11234566766634545544 334557777764 4


Q ss_pred             ceEEEEec-CcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE
Q 001295          884 DEVKSKLK-GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV  962 (1106)
Q Consensus       884 ~~~~~~l~-~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~  962 (1106)
                      ++....+. ........+++.++|.++++....+.+.+++.....      +..... .........+++.++|..+++.
T Consensus       102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~------~~~~g~-~~~~~~~~~i~~d~~g~i~v~d  174 (279)
T d1q7fa_         102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNV------LHKFGC-SKHLEFPNGVVVNDKQEIFISD  174 (279)
T ss_dssp             SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCE------EEEEEC-TTTCSSEEEEEECSSSEEEEEE
T ss_pred             ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCce------eecccc-cccccccceeeeccceeEEeee
Confidence            66565553 345667889999999998888888888888765421      111100 1111356788999999887774


Q ss_pred             -eCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEc-CCeEEEEEcCCceeEEeeCCCcccCCCCCCCCc
Q 001295          963 -HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFL-DATVCVFSAANLKLRCRINPSAYLPAGVSSSNV 1040 (1106)
Q Consensus       963 -~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~-Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v 1040 (1106)
                       ..+.|.+||.. ++.+..+...++......|++.++|+.+++-.. ++.|.+|+ .+|+.+..+....        ...
T Consensus       175 ~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~--------~~~  244 (279)
T d1q7fa_         175 NRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKV--------KHA  244 (279)
T ss_dssp             GGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESS--------CCS
T ss_pred             ccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCC--------CCC
Confidence             67899999975 566666654455667899999999997776543 45799998 5688777664111        112


Q ss_pred             cceEEEEeCCCCCEEEEEeCCCcEEEEeecCCC
Q 001295         1041 HPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus      1041 ~~~~~~~~~~d~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
                      .|..+++.| ||.+++ ++.++.|++|+.....
T Consensus       245 ~p~~vav~~-dG~l~V-~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         245 QCFDVALMD-DGSVVL-ASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             CEEEEEEET-TTEEEE-EETTTEEEEEECSCCC
T ss_pred             CEeEEEEeC-CCcEEE-EeCCCeEEEEEeeeec
Confidence            455888998 676554 5679999999987754

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=2.7e-07  Score=102.58  Aligned_cols=362  Identities=11%  Similarity=0.012  Sum_probs=191.0

Q ss_pred             ecCCeEEEEeCCCCCceeEeeCCC---CeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEE---------ECCCe
Q 001295          522 ALDGKIKAWLYDNLGSRVDYEAPG---RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA---------GDDFS  589 (1106)
Q Consensus       522 ~~dg~i~iwd~~~~~~~~~~~~~~---~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~---------~~d~~  589 (1106)
                      ..+|.|.+||+.++.....+....   ..+....+|||++                     +++..         +..+.
T Consensus        34 ~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~---------------------~vl~~~~~~~~~r~s~~~~   92 (465)
T d1xfda1          34 EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDRE---------------------YALFSYNVEPIYQHSYTGY   92 (465)
T ss_dssp             CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSS---------------------EEEEEESCCCCSSSCCCSE
T ss_pred             eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCC---------------------eEEEEEcccceeEeecccc
Confidence            456778888888766544333221   2344455555555                     44443         23578


Q ss_pred             EEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccccccccCCCCCCCCcCc
Q 001295          590 IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISP  669 (1106)
Q Consensus       590 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  669 (1106)
                      +.++|+.+++.............+....|||||+.+|.... +.|.+.+..++. ..+...                   
T Consensus        93 ~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~-~nl~~~~~~~~~-~~~lt~-------------------  151 (465)
T d1xfda1          93 YVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQ-AIRVVS-------------------  151 (465)
T ss_dssp             EEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSC-CEEEEC-------------------
T ss_pred             EEEEEccCCceeeccCccCCccccceeeeccCCceEEEEec-ceEEEEecCCCc-eEEEec-------------------
Confidence            99999998876544333333345667899999999988764 677777765542 111110                   


Q ss_pred             hhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccceecccCccccccceEEE
Q 001295          670 ISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRL  749 (1106)
Q Consensus       670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~  749 (1106)
                                                                .+.++.+ .+-+..     -..    . ..-...-..+
T Consensus       152 ------------------------------------------~g~~~~i-~nG~~d-----~vy----e-ee~~~~~~a~  178 (465)
T d1xfda1         152 ------------------------------------------TGKEGVI-YNGLSD-----WLY----E-EEILKTHIAH  178 (465)
T ss_dssp             ------------------------------------------CCBTTTE-EEEECC-----HHH----H-HTTSSSSEEE
T ss_pred             ------------------------------------------ccCccee-eccccc-----hhh----h-hhhccccceE
Confidence                                                      0000000 000000     000    0 0011122467


Q ss_pred             EEcCCCceEEEeecC-ceEEEeeccccc-----------cCCCCccccccCccccCCCCCCccccccCCC---CCCCCee
Q 001295          750 IFTNSGNAILALASN-AIHLLWKWQRTE-----------RNSSGKATASVAPQLWQPPSGIMMTNDVTDS---NPEEAVP  814 (1106)
Q Consensus       750 ~~s~~~~~l~~~~~d-g~i~iw~~~~~~-----------~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~---~~~~~v~  814 (1106)
                      .|||||+.|+....| ..+..+.+....           ....|.......+.++++.++..........   ....-+.
T Consensus       179 ~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~  258 (465)
T d1xfda1         179 WWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYIT  258 (465)
T ss_dssp             EECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEE
T ss_pred             EECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceee
Confidence            789999998887654 445555443211           1112222222345566766554322211110   1223467


Q ss_pred             EEEEecCCCEEEEEeC-----CeEEEEEcCCCceeeeecCCC-CC----eeEEEEecCCCceEE---EeeCCC--cEEEE
Q 001295          815 CFALSKNDSYVMSASG-----GKISLFNMMTFKTMATFMPPP-PA----ATFLAFHPQDNNIIA---IGMDDS--SIQIY  879 (1106)
Q Consensus       815 ~l~~s~~~~~l~~~sd-----g~i~vwd~~~~~~~~~~~~~~-~~----v~~l~~s~~d~~~la---~g~~dg--~v~iw  879 (1106)
                      .+.|++++++++...+     ..|.++|..++++...+.... ..    -....|++ ||+.++   ....+|  .++.+
T Consensus       259 ~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~-dg~~~~fi~~se~~g~~~ly~~  337 (465)
T d1xfda1         259 MVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSK-DGRKFFFIRAIPQGGRGKFYHI  337 (465)
T ss_dssp             EEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECT-TSCSEEEEEEECCSSSSCEEEE
T ss_pred             eeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEcc-CCCeeEEEEeeeecccCceEEE
Confidence            8899999987776642     248889999988765543221 11    23467888 665332   222333  34444


Q ss_pred             Eee------cceEEEEecCcccCeeEE-EEecCCCEEE-EEcCCC--cEEEEeCCCcccccceeecccCCCCCCCCCCce
Q 001295          880 NVR------VDEVKSKLKGHSKRITGL-AFSHALNVLV-SSGADS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTR  949 (1106)
Q Consensus       880 d~~------~~~~~~~l~~h~~~V~~l-~~s~d~~~l~-s~s~Dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  949 (1106)
                      ++.      .++.+..+....-.|..+ +|..+++.|. ++..++  .-.+|.+.-.......++......   ......
T Consensus       338 ~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~---~~~~~~  414 (465)
T d1xfda1         338 TVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVE---NCTYFS  414 (465)
T ss_dssp             EEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSS---SCCCCE
T ss_pred             EeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCC---CCCEEE
Confidence            432      234445555445556665 6888877664 454432  234555432111111222211111   125578


Q ss_pred             EEEcCCCcEEEEEeC----CeEEEEecCCceEeeecc
Q 001295          950 VQFHQDQIHFLVVHE----TQLAIFETTKLECVKQWV  982 (1106)
Q Consensus       950 ~~~s~dg~~l~~~~d----~~v~i~d~~~~~~~~~~~  982 (1106)
                      +.|||+|++++....    -.+.+++..+++.+..+.
T Consensus       415 ~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~~~Le  451 (465)
T d1xfda1         415 ASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDLE  451 (465)
T ss_dssp             EEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEEE
T ss_pred             EEECCCCCEEEEEeecCCCCeEEEEECCCCCEEEEEc
Confidence            999999999987322    247777777777766654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.86  E-value=1e-06  Score=92.28  Aligned_cols=257  Identities=14%  Similarity=0.087  Sum_probs=154.2

Q ss_pred             CCCCcEEEEEecCCCeEEEEEec-------cCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEc
Q 001295          349 QGSSPMSMDFHPVQQTLLLVGTN-------VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  421 (1106)
Q Consensus       349 h~~~v~~~~~sp~g~~llatg~~-------dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s  421 (1106)
                      .-.....++|.|+|+ |+++...       +|+|..||..++........               ......+.-..++|.
T Consensus        16 ~~~g~EGpa~d~dG~-ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~---------------~~~~~~g~P~Gl~~~   79 (314)
T d1pjxa_          16 DIPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP---------------EVNGYGGIPAGCQCD   79 (314)
T ss_dssp             CCTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEECC---------------EETTEECCEEEEEEC
T ss_pred             CCCCCeEeEEeCCCC-EEEEECccccccccCCEEEEEECCCCcEEEEECC---------------ccccCCCcceeEEEe
Confidence            345567899999999 4554322       36788999887765331000               001112235689999


Q ss_pred             cCCCEEEEEeCCCeEEEEEccCCceeeeeeeecccc-CCeeEEEEcCCCCceEEEEecC---------------CCcEEE
Q 001295          422 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITCGD---------------DKTIKV  485 (1106)
Q Consensus       422 pdg~~las~~~d~~v~iwd~~~~~~~~~~~~l~~h~-~~V~~~~~s~d~~~~~l~s~~~---------------d~~i~i  485 (1106)
                      ++|+.|+++...+.|...+.+++..........+.. ...+.+++.++|.  +.++...               +|.|..
T Consensus        80 ~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~--lyvtd~~~~~~~~~~~~~~~~~~G~v~~  157 (314)
T d1pjxa_          80 RDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSIYC  157 (314)
T ss_dssp             SSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEEEE
T ss_pred             CCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCC--EEEecCccCcccccccceeccCCceEEE
Confidence            999988888777778889987654321111111111 1367899999998  5665321               234444


Q ss_pred             EeCCCCceeEEEeccCCCeEEEeccccCCc---eEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEE
Q 001295          486 WDATNGAKQYIFEGHEAPVYSVCPHHKENI---QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ  562 (1106)
Q Consensus       486 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~  562 (1106)
                      ++. .++..... ......+.++|+++.++   .+.++-+..+.|..||+.....+...        .+.....+     
T Consensus       158 ~~~-dg~~~~~~-~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~--------~~~~~~~~-----  222 (314)
T d1pjxa_         158 FTT-DGQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK--------KVWGHIPG-----  222 (314)
T ss_dssp             ECT-TSCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE--------EEEEECCC-----
T ss_pred             Eee-cCceeEee-CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCcccccee--------eEEEEccc-----
Confidence            442 34433322 23344567788776543   24455567788888876543322110        00000000     


Q ss_pred             eeeccceeEEEEcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEE-EEEeCCCcEEEEEccC
Q 001295          563 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL-AVSTNDNGIKILATSD  641 (1106)
Q Consensus       563 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iwd~~~  641 (1106)
                       ........+++..+|+..++....+.|.+||.+.++.+..+....  ...++++|.||++.| ++.+.+|.|...++..
T Consensus       223 -~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~--~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         223 -THEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPF--EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             -CSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSS--SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             -cccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCC--CCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence             001122346777788888888888999999998888777776542  357889999999755 5556678888777653

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.86  E-value=2e-07  Score=95.95  Aligned_cols=228  Identities=12%  Similarity=0.057  Sum_probs=132.7

Q ss_pred             cceeeeccCCCCcEEEEEecCCCeEEEEEeccC--cEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEE
Q 001295          341 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV  418 (1106)
Q Consensus       341 ~~~~~~~~h~~~v~~~~~sp~g~~llatg~~dg--~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l  418 (1106)
                      .+...+..+...+..-+|||||++|+.+....+  .+.+.+..++....                    +..+.+.+...
T Consensus        29 ~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~   88 (269)
T d2hqsa1          29 YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VASFPRHNGAP   88 (269)
T ss_dssp             CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE--------------------EECCSSCEEEE
T ss_pred             CCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeE--------------------Eeeeecccccc
Confidence            344555567788899999999998555554444  35555555554432                    35667788999


Q ss_pred             EEccCCCEEEEEeC-CCeEEEE--EccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCc--EEEEeCCCCce
Q 001295          419 IWSPDGSLFGVAYS-RHIVQIY--SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT--IKVWDATNGAK  493 (1106)
Q Consensus       419 ~~spdg~~las~~~-d~~v~iw--d~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~--i~iwd~~~~~~  493 (1106)
                      .|||||+.++.... ++...++  ........    ....+........+++++.. .+++...++.  |.+.++..+. 
T Consensus        89 ~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~i~~~~~~~~~-  162 (269)
T d2hqsa1          89 AFSPDGSKLAFALSKTGSLNLYVMDLASGQIR----QVTDGRSNNTEPTWFPDSQN-LAFTSDQAGRPQVYKVNINGGA-  162 (269)
T ss_dssp             EECTTSSEEEEEECTTSSCEEEEEETTTCCEE----ECCCCSSCEEEEEECTTSSE-EEEEECTTSSCEEEEEETTSSC-
T ss_pred             eecCCCCeeeEeeecCCccceeecccccccce----eeeecccccccccccccccc-ceecccccCCceEeeeeccccc-
Confidence            99999999988653 3333333  33332221    23334455566778888885 4555555554  4555555543 


Q ss_pred             eEEEeccCCCeEEEeccccCCceEEEEEe-cCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEE
Q 001295          494 QYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV  572 (1106)
Q Consensus       494 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~  572 (1106)
                      ...+..+........|+++.  ..++..+ ..+...+|......................|+|||+              
T Consensus       163 ~~~~~~~~~~~~~~~~spdg--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~--------------  226 (269)
T d2hqsa1         163 PQRITWEGSQNQDADVSSDG--KFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGT--------------  226 (269)
T ss_dssp             CEECCCSSSEEEEEEECTTS--SEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSS--------------
T ss_pred             ceeeeccccccccccccccc--ceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCC--------------
Confidence            33444455555666665544  5555544 455555555544333333333444445556666666              


Q ss_pred             EEcCCCCEEEEEE---CCCeEEEEECCCcceeEEEccCCCCCCcCeEEEcc
Q 001295          573 QFDTTKNRFLAAG---DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK  620 (1106)
Q Consensus       573 ~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  620 (1106)
                             +|+..+   ....|+++++..+.... +...  ...+...+|+|
T Consensus       227 -------~i~f~s~~~~~~~l~~~~~dg~~~~~-lt~~--~g~~~~p~WSP  267 (269)
T d2hqsa1         227 -------MVIYSSSQGMGSVLNLVSTDGRFKAR-LPAT--DGQVKFPAWSP  267 (269)
T ss_dssp             -------EEEEEEEETTEEEEEEEETTSCCEEE-CCCS--SSEEEEEEECC
T ss_pred             -------EEEEEEcCCCCcEEEEEECCCCCEEE-EeCC--CCcEEeEEeCC
Confidence                   444322   34578999998766544 3322  22466678887

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.84  E-value=3e-07  Score=93.84  Aligned_cols=241  Identities=9%  Similarity=0.033  Sum_probs=145.5

Q ss_pred             CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEE
Q 001295          349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  428 (1106)
Q Consensus       349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  428 (1106)
                      +......++++++|..+++..+..+.|..++.........                  ...+ ......++++++|++++
T Consensus        12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~------------------~~~~-~~~p~gvav~~~g~i~v   72 (260)
T d1rwia_          12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL------------------PFNG-LYQPQGLAVDGAGTVYV   72 (260)
T ss_dssp             SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEEC------------------CCCS-CCSCCCEEECTTCCEEE
T ss_pred             CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEe------------------ccCC-ccCceEEEEcCCCCEEE
Confidence            4456789999999994344444557777776654432221                  0111 22456789999999888


Q ss_pred             EEeCCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEe
Q 001295          429 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC  508 (1106)
Q Consensus       429 s~~~d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~  508 (1106)
                      +....+.+++++-.++..+.   .. .......++++.+++.  ++++-.....+..++............-......++
T Consensus        73 ~d~~~~~i~~~~~~~~~~~~---~~-~~~~~p~~iavd~~g~--i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~  146 (260)
T d1rwia_          73 TDFNNRVVTLAAGSNNQTVL---PF-DGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVA  146 (260)
T ss_dssp             EETTTEEEEECTTCSCCEEC---CC-CSCCSEEEEEECTTCC--EEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEE
T ss_pred             eeeeeceeeeeeeccceeee---ee-eeeeecccccccccce--eEeeccccccccccccccceeeeeeecccCCcceee
Confidence            77777777766655544332   12 2234678999999998  667766677788887554432222112233456777


Q ss_pred             ccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECCC
Q 001295          509 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF  588 (1106)
Q Consensus       509 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  588 (1106)
                      +.+  +++++++...++.|..+|.+.................                     ++++++|+.+++....+
T Consensus       147 ~~~--~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~g---------------------i~~d~~g~l~vsd~~~~  203 (260)
T d1rwia_         147 VDN--SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWG---------------------IAVDEAGTVYVTEHNTN  203 (260)
T ss_dssp             ECT--TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEE---------------------EEECTTCCEEEEETTTT
T ss_pred             ecC--CCCEeeeccccccccccccccceeeeeeccccCCCcc---------------------ceeeeeeeeeeeecCCC
Confidence            644  5578888888899999987754332221122222334                     44555555666666778


Q ss_pred             eEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEc
Q 001295          589 SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT  639 (1106)
Q Consensus       589 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~  639 (1106)
                      .|..++..... ...+. .........++++++|.++++-..++.|+.++.
T Consensus       204 ~i~~~~~~~~~-~~~~~-~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         204 QVVKLLAGSTT-STVLP-FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             EEEEECTTCSC-CEECC-CCSCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             EEEEEeCCCCe-EEEEc-cCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence            88888765443 22322 222334578999999998887677777765543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=1.6e-06  Score=96.12  Aligned_cols=119  Identities=15%  Similarity=0.142  Sum_probs=79.6

Q ss_pred             EEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeC----
Q 001295          357 DFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS----  432 (1106)
Q Consensus       357 ~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~----  432 (1106)
                      .|.+++.+ +.. ..+|.|.+||+.+++.....     +.           ..-..-.+....|||||++++....    
T Consensus        23 ~W~~~~~~-~~~-~~~g~i~~~~~~~~~~~~l~-----~~-----------~~~~~~~~~~~~~SpD~~~vl~~~~~~~~   84 (465)
T d1xfda1          23 KWISDTEF-IYR-EQKGTVRLWNVETNTSTVLI-----EG-----------KKIESLRAIRYEISPDREYALFSYNVEPI   84 (465)
T ss_dssp             CBSSSSCB-CCC-CSSSCEEEBCGGGCCCEEEE-----CT-----------TTTTTTTCSEEEECTTSSEEEEEESCCCC
T ss_pred             EEeCCCcE-EEE-eCCCcEEEEECCCCCEEEEE-----cC-----------ccccccccceeEECCCCCeEEEEEcccce
Confidence            47788875 433 55789999999988653211     10           0112235677899999999887643    


Q ss_pred             -----CCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEE
Q 001295          433 -----RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF  497 (1106)
Q Consensus       433 -----d~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  497 (1106)
                           .+.+.++|+.++.... +.........+....|||||+.+.++.   ++.|.+.+..++..++..
T Consensus        85 ~r~s~~~~~~i~d~~~~~~~~-l~~~~~~~~~l~~~~wSPDG~~iafv~---~~nl~~~~~~~~~~~~lt  150 (465)
T d1xfda1          85 YQHSYTGYYVLSKIPHGDPQS-LDPPEVSNAKLQYAGWGPKGQQLIFIF---ENNIYYCAHVGKQAIRVV  150 (465)
T ss_dssp             SSSCCCSEEEEEESSSCCCEE-CCCTTCCSCCCSBCCBCSSTTCEEEEE---TTEEEEESSSSSCCEEEE
T ss_pred             eEeeccccEEEEEccCCceee-ccCccCCccccceeeeccCCceEEEEe---cceEEEEecCCCceEEEe
Confidence                 4678999999887432 222333455677899999999633332   567888888777665543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.76  E-value=1.1e-06  Score=90.12  Aligned_cols=201  Identities=12%  Similarity=0.168  Sum_probs=111.1

Q ss_pred             CCCCcCeEEEEEccCCCEEEEEeCCC---eEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecCCCcEEE
Q 001295          409 KDPGVSVNRVIWSPDGSLFGVAYSRH---IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV  485 (1106)
Q Consensus       409 ~~h~~~V~~l~~spdg~~las~~~d~---~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~i  485 (1106)
                      ..+...+..-+|||||++||......   .+.+.+..++....    +..+.+......|+|+|+.+ +.....++...+
T Consensus        35 ~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~spdg~~i-~~~~~~~~~~~~  109 (269)
T d2hqsa1          35 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ----VASFPRHNGAPAFSPDGSKL-AFALSKTGSLNL  109 (269)
T ss_dssp             EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE----EECCSSCEEEEEECTTSSEE-EEEECTTSSCEE
T ss_pred             ecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeE----EeeeecccccceecCCCCee-eEeeecCCccce
Confidence            34456788999999999999875443   46677777665432    45677888999999999963 333333333333


Q ss_pred             E--eCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEE--eCCCCCceeEeeCCCCeeEEEEEecCCCeEE
Q 001295          486 W--DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW--LYDNLGSRVDYEAPGRWCTTMAYSADGTRTY  561 (1106)
Q Consensus       486 w--d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw--d~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~  561 (1106)
                      +  ........ .............+..... ..+++...+|...+|  ++...... .............++|+++   
T Consensus       110 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~---  183 (269)
T d2hqsa1         110 YVMDLASGQIR-QVTDGRSNNTEPTWFPDSQ-NLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGK---  183 (269)
T ss_dssp             EEEETTTCCEE-ECCCCSSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEEEECTTSS---
T ss_pred             eecccccccce-eeeeccccccccccccccc-cceecccccCCceEeeeecccccce-eeecccccccccccccccc---
Confidence            3  22222222 2222333333333433333 455555556644444  44433221 2222333344445555554   


Q ss_pred             EeeeccceeEEEEcCCCCEEEEEEC-CC--eEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCC---CcEE
Q 001295          562 QGFRKRSLGVVQFDTTKNRFLAAGD-DF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND---NGIK  635 (1106)
Q Consensus       562 ~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d---g~i~  635 (1106)
                                        .++..+. .+  .+.+.+...+.. .... .  ........|+|||+.|+..+..   ..|+
T Consensus       184 ------------------~~~~~~~~~~~~~i~~~~~~~~~~-~~~~-~--~~~~~~p~~SPDG~~i~f~s~~~~~~~l~  241 (269)
T d2hqsa1         184 ------------------FMVMVSSNGGQQHIAKQDLATGGV-QVLS-S--TFLDETPSLAPNGTMVIYSSSQGMGSVLN  241 (269)
T ss_dssp             ------------------EEEEEEECSSCEEEEEEETTTCCE-EECC-C--SSSCEEEEECTTSSEEEEEEEETTEEEEE
T ss_pred             ------------------eeEEEeecCCceeeeEeecccccc-eEee-c--CccccceEECCCCCEEEEEEcCCCCcEEE
Confidence                              5555443 33  445555554443 2222 2  2245678999999999866543   4578


Q ss_pred             EEEccCC
Q 001295          636 ILATSDG  642 (1106)
Q Consensus       636 iwd~~~~  642 (1106)
                      ++++..+
T Consensus       242 ~~~~dg~  248 (269)
T d2hqsa1         242 LVSTDGR  248 (269)
T ss_dssp             EEETTSC
T ss_pred             EEECCCC
Confidence            8888665

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.76  E-value=1.7e-06  Score=90.52  Aligned_cols=199  Identities=10%  Similarity=0.068  Sum_probs=127.7

Q ss_pred             CeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCC----CCeeEEEEecCCCceEEEeeC--------------
Q 001295          812 AVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP----PAATFLAFHPQDNNIIAIGMD--------------  872 (1106)
Q Consensus       812 ~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~----~~v~~l~~s~~d~~~la~g~~--------------  872 (1106)
                      ....++|++++..++++. .+.|..++..............    ...+.+++.+ +|++.++-..              
T Consensus        72 ~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~-~G~lyvtd~~~~~~~~~~~~~~~~  150 (314)
T d1pjxa_          72 IPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQE  150 (314)
T ss_dssp             CEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSS
T ss_pred             cceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECC-CCCEEEecCccCcccccccceecc
Confidence            467899999999887776 5778888877543322111111    1357799999 7887776432              


Q ss_pred             -CCcEEEEEeecceEEEEecCcccCeeEEEEecCCC-----EEEEEcCCCcEEEEeCCCccccc-ceeecccCCCCCCCC
Q 001295          873 -DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN-----VLVSSGADSQLCVWSSDGWEKQK-NRFLQIPTGRTPTAQ  945 (1106)
Q Consensus       873 -dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~-----~l~s~s~Dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~  945 (1106)
                       +|.|+.++. .++... +..+...-+.++|++++.     ++++-+..+.|..|++....... .+......+...  .
T Consensus       151 ~~G~v~~~~~-dg~~~~-~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~--~  226 (314)
T d1pjxa_         151 KFGSIYCFTT-DGQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE--G  226 (314)
T ss_dssp             SCEEEEEECT-TSCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS--C
T ss_pred             CCceEEEEee-cCceeE-eeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcccccc--c
Confidence             234444443 244332 223334457899999875     55566778889888876432221 112222222111  2


Q ss_pred             CCceEEEcCCCcEEEE-EeCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEE-EEEEcCCeEEEEEcC
Q 001295          946 SDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLV-YACFLDATVCVFSAA 1017 (1106)
Q Consensus       946 ~i~~~~~s~dg~~l~~-~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l-~t~s~Dg~i~vwd~~ 1017 (1106)
                      ....+++..+|+++++ ...+.|.+||.+++..+..+..  ....+++++|.||++.| ++.+.+|.|...++.
T Consensus       227 ~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~--p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         227 GADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRC--PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEEC--SSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             cceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEEC--CCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            3467999999998777 4678999999988876665542  34678999999999754 566677888887764

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.73  E-value=4.6e-06  Score=87.49  Aligned_cols=234  Identities=12%  Similarity=0.074  Sum_probs=146.8

Q ss_pred             CCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCC----CcEEEEEeecc
Q 001295          810 EEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD----SSIQIYNVRVD  884 (1106)
Q Consensus       810 ~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~d----g~v~iwd~~~~  884 (1106)
                      ...+..++|+++|++.++-. ++.|..|+..+......+.........+++++ +|+++++...+    +.|...+..++
T Consensus        39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGD  117 (319)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcCCCc
Confidence            34457899999998666654 78999999888766666655666789999999 88887765432    23444444444


Q ss_pred             eEEEEecC--cccCeeEEEEecCCCEEEEEcCC------CcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCC
Q 001295          885 EVKSKLKG--HSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ  956 (1106)
Q Consensus       885 ~~~~~l~~--h~~~V~~l~~s~d~~~l~s~s~D------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg  956 (1106)
                      ........  -....+.+++.++|++.++....      +.+..++.+....  .......       .....++|+||+
T Consensus       118 ~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~--~~~~~~~-------~~pnGia~s~dg  188 (319)
T d2dg1a1         118 NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV--TPIIQNI-------SVANGIALSTDE  188 (319)
T ss_dssp             SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE--EEEEEEE-------SSEEEEEECTTS
T ss_pred             eeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccccee--EEEeecc-------ceeeeeeecccc
Confidence            33333321  12347789999999987764332      2244444433211  1111111       134679999999


Q ss_pred             cEEEEE--eCCeEEEEecCCce----Eeee--cccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeCCC
Q 001295          957 IHFLVV--HETQLAIFETTKLE----CVKQ--WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPS 1028 (1106)
Q Consensus       957 ~~l~~~--~d~~v~i~d~~~~~----~~~~--~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~ 1028 (1106)
                      +.|.++  ..+.|..|++....    ....  ............|++..+|++.++....+.|.+|| .+|+.+.++.  
T Consensus       189 ~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~-p~G~~l~~i~--  265 (319)
T d2dg1a1         189 KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFN-KRGYPIGQIL--  265 (319)
T ss_dssp             SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEEC-TTSCEEEEEE--
T ss_pred             ceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEEC-CCCcEEEEEe--
Confidence            877664  57899999875421    1111  00011123367899999999888888899999999 5789988887  


Q ss_pred             cccCCCCCCCCccceEEEEeCCCCCEEEEEe
Q 001295         1029 AYLPAGVSSSNVHPLVIAAHPQEPNEFALGL 1059 (1106)
Q Consensus      1029 ~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~ 1059 (1106)
                        +|.........+.+++|.+. .+.+++..
T Consensus       266 --~P~~~~~~~~~~~~~~~~~~-~~~~~~t~  293 (319)
T d2dg1a1         266 --IPGRDEGHMLRSTHPQFIPG-TNQLIICS  293 (319)
T ss_dssp             --CTTGGGTCSCBCCEEEECTT-SCEEEEEE
T ss_pred             --CCCcCCCcCceeeeEEEeCC-CCEEEEEc
Confidence              34322222234458999884 55555444

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.64  E-value=2.6e-05  Score=81.62  Aligned_cols=243  Identities=13%  Similarity=0.070  Sum_probs=149.3

Q ss_pred             CCCCcEEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEE
Q 001295          349 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  428 (1106)
Q Consensus       349 h~~~v~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  428 (1106)
                      ....+..++|.++|+ |+++-...+.|..|+.++++....                   +.........++|++||++++
T Consensus        38 ~~~~lEG~~~D~~G~-Ly~~D~~~g~I~ri~p~g~~~~~~-------------------~~~~~~~p~gla~~~dG~l~v   97 (319)
T d2dg1a1          38 KGLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRP-------------------FVSHKANPAAIKIHKDGRLFV   97 (319)
T ss_dssp             SCCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEE-------------------EECSSSSEEEEEECTTSCEEE
T ss_pred             CCcCcEeCEECCCCC-EEEEECCCCEEEEEECCCCeEEEE-------------------EeCCCCCeeEEEECCCCCEEE
Confidence            445567999999998 788877889999999887654432                   223344678999999999887


Q ss_pred             EEeCC----CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCceEEEEecC------CCcEEEEeCCCCceeEEEe
Q 001295          429 VAYSR----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD------DKTIKVWDATNGAKQYIFE  498 (1106)
Q Consensus       429 s~~~d----~~v~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~  498 (1106)
                      +...+    +.|...+..++...... .-..-....+.+++.++|.  +.++...      .+.+..++.. ++.+..+.
T Consensus        98 a~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~nd~~~d~~G~--l~vtd~~~~~~~~~g~v~~~~~d-g~~~~~~~  173 (319)
T d2dg1a1          98 CYLGDFKSTGGIFAATENGDNLQDII-EDLSTAYCIDDMVFDSKGG--FYFTDFRGYSTNPLGGVYYVSPD-FRTVTPII  173 (319)
T ss_dssp             EECTTSSSCCEEEEECTTSCSCEEEE-CSSSSCCCEEEEEECTTSC--EEEEECCCBTTBCCEEEEEECTT-SCCEEEEE
T ss_pred             EecCCCccceeEEEEcCCCceeeeec-cCCCcccCCcceeEEeccc--eeecccccccccCcceeEEEecc-cceeEEEe
Confidence            75432    33444555554432211 1111123578899999998  5565432      2235555533 33344433


Q ss_pred             ccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCC
Q 001295          499 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK  578 (1106)
Q Consensus       499 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~  578 (1106)
                      ..-...+.++|+++.+ .+.++-+..+.|..|++...........     ........+        ......++++.+|
T Consensus       174 ~~~~~pnGia~s~dg~-~lyvad~~~~~I~~~d~~~~g~~~~~~~-----~~~~~~~~~--------~~~PdGl~vD~~G  239 (319)
T d2dg1a1         174 QNISVANGIALSTDEK-VLWVTETTANRLHRIALEDDGVTIQPFG-----ATIPYYFTG--------HEGPDSCCIDSDD  239 (319)
T ss_dssp             EEESSEEEEEECTTSS-EEEEEEGGGTEEEEEEECTTSSSEEEEE-----EEEEEECCS--------SSEEEEEEEBTTC
T ss_pred             eccceeeeeeeccccc-eEEEecccCCceEEEEEcCCCceecccc-----ceeeeccCC--------ccceeeeeEcCCC
Confidence            3344567788865442 3556667789999998865332211100     000000000        0012346777888


Q ss_pred             CEEEEEECCCeEEEEECCCcceeEEEccCC----CCCCcCeEEEccCCCEEEEEeC
Q 001295          579 NRFLAAGDDFSIKFWDMDSVQLLTSIDADG----GLPASPRIRFNKDGCLLAVSTN  630 (1106)
Q Consensus       579 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----~~~~v~~v~~s~~~~~l~~~~~  630 (1106)
                      +..++....+.|.+||. .|+.+..+....    +...+.+++|.+++..+++.+.
T Consensus       240 ~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         240 NLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             CEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             CEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            88888888999999995 788888876442    2335789999998877776654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.35  E-value=9.8e-06  Score=83.39  Aligned_cols=200  Identities=15%  Similarity=0.114  Sum_probs=117.9

Q ss_pred             EEecC--CCEEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeC-CC-----cEEEEEeecceEEE
Q 001295          817 ALSKN--DSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-DS-----SIQIYNVRVDEVKS  888 (1106)
Q Consensus       817 ~~s~~--~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~-dg-----~v~iwd~~~~~~~~  888 (1106)
                      ..+||  |+.++..++|.|.+.|+.+++.. .+..+...+...+||| ||+.||.... ++     .|++++..+++...
T Consensus         5 ~~sPdi~G~~v~f~~~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SP-DG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCCDDLWEHDLKSGSTR-KIVSNLGVINNARFFP-DGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEETTEEEEEETTTCCEE-EEECSSSEEEEEEECT-TSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEeCCcEEEEECCCCCEE-EEecCCCcccCEEECC-CCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            46788  99999889899999999987754 5555677789999999 8888876532 22     47777777776543


Q ss_pred             Eec------CcccCeeEEEEecCCCEEEEEcCC------CcEEEEeCCCccccc--------------ceeecccCCC--
Q 001295          889 KLK------GHSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQK--------------NRFLQIPTGR--  940 (1106)
Q Consensus       889 ~l~------~h~~~V~~l~~s~d~~~l~s~s~D------g~i~vwd~~~~~~~~--------------~~~~~~~~~~--  940 (1106)
                      ...      .........+|+|||+.|+.....      ..+...+...+....              ...+......  
T Consensus        83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELP  162 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCT
T ss_pred             eeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecCCccceeeecCCCeEEEeeccccc
Confidence            211      122345678899999998875332      123344433322100              0000000000  


Q ss_pred             -------------------------CCCCCCCceEEEcCCCcEEEEE--eCCeEEEEecCCceEeeecccCCCCCCeeEE
Q 001295          941 -------------------------TPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLECVKQWVPRESSAPITHA  993 (1106)
Q Consensus       941 -------------------------~~~~~~i~~~~~s~dg~~l~~~--~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l  993 (1106)
                                               ...........++++..+....  ....|.++|+.+++......  ...  ....
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~lt~--~~~--~~~~  238 (281)
T d1k32a2         163 HWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTS--FTD--YYPR  238 (281)
T ss_dssp             TSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCC--CCS--SCEE
T ss_pred             eeeeeccCCcceeeeeccccceeeccCCccccceeeeeccccceecccccccceEEEeCCCCceEEeec--CCC--cccc
Confidence                                     0000112223334443222221  23468888887776544322  112  2334


Q ss_pred             EECCCCCEEEEEEcCCeEEEEEcCCceeEE
Q 001295          994 TFSCDSQLVYACFLDATVCVFSAANLKLRC 1023 (1106)
Q Consensus       994 ~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~ 1023 (1106)
                      .|||||+.|+.. .++.|+++|+++++...
T Consensus       239 ~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~  267 (281)
T d1k32a2         239 HLNTDGRRILFS-KGGSIYIFNPDTEKIEK  267 (281)
T ss_dssp             EEEESSSCEEEE-ETTEEEEECTTTCCEEE
T ss_pred             cCcCCCCEEEEE-eCCEEEEEECCCCCEEE
Confidence            689999998875 47899999999887653

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.28  E-value=4.6e-05  Score=78.07  Aligned_cols=93  Identities=13%  Similarity=0.098  Sum_probs=63.9

Q ss_pred             EEecC--CCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeC-C
Q 001295          357 DFHPV--QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS-R  433 (1106)
Q Consensus       357 ~~sp~--g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~-d  433 (1106)
                      ..|||  |++++.+.  +|.|.+.|+.+++...                    +..+.+.+...+|||||++||.... +
T Consensus         5 ~~sPdi~G~~v~f~~--~~dl~~~d~~~g~~~~--------------------Lt~~~~~~~~p~~SPDG~~iaf~~~~~   62 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC--CDDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIAIRVMRG   62 (281)
T ss_dssp             CEEEEEETTEEEEEE--TTEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEEEEEEES
T ss_pred             ccCCCCCCCEEEEEe--CCcEEEEECCCCCEEE--------------------EecCCCcccCEEECCCCCEEEEEEeeC
Confidence            46899  99865553  4678888999887643                    4566778899999999999997642 1


Q ss_pred             -----CeEEEEEccCCceeeeeee---eccccCCeeEEEEcCCCCc
Q 001295          434 -----HIVQIYSYHGGDEVRQHLE---IDAHVGGVNDIAFSHPNKQ  471 (1106)
Q Consensus       434 -----~~v~iwd~~~~~~~~~~~~---l~~h~~~V~~~~~s~d~~~  471 (1106)
                           ..|.+++..+++..+....   ............|+|||+.
T Consensus        63 ~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~  108 (281)
T d1k32a2          63 SSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNL  108 (281)
T ss_dssp             TTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCE
T ss_pred             CCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCE
Confidence                 2477788888765431100   0112234678899999994

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.23  E-value=0.0003  Score=72.10  Aligned_cols=187  Identities=12%  Similarity=0.027  Sum_probs=124.6

Q ss_pred             CCCeeEEEEecCCCEEEEEeCCeEEEEEcCCCceeeeecC----CCCCeeEEEEecCCCceEEEeeC----CCcEEEEEe
Q 001295          810 EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMP----PPPAATFLAFHPQDNNIIAIGMD----DSSIQIYNV  881 (1106)
Q Consensus       810 ~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~----~~~~v~~l~~s~~d~~~la~g~~----dg~v~iwd~  881 (1106)
                      ...+.++++.++|.++++. ...|.++|..+++.......    ....+..+.+.| +|++.++...    .+.-.+|.+
T Consensus        58 ~~~~~~i~~~~dg~l~va~-~~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~~~  135 (295)
T d2ghsa1          58 PFMGSALAKISDSKQLIAS-DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHV  135 (295)
T ss_dssp             SSCEEEEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEE
T ss_pred             CCCcEEEEEecCCCEEEEE-eCccEEeecccceeeEEeeeecCCCcccceeeEECC-CCCEEEEeccccccccceeEeee
Confidence            4567899999999877754 45699999998875433221    122478899999 7877665432    235577888


Q ss_pred             ecceEEEEecCcccCeeEEEEecCCCEEE-EEcCCCcEEEEeCCCcccc--c-ceeecccCCCCCCCCCCceEEEcCCCc
Q 001295          882 RVDEVKSKLKGHSKRITGLAFSHALNVLV-SSGADSQLCVWSSDGWEKQ--K-NRFLQIPTGRTPTAQSDTRVQFHQDQI  957 (1106)
Q Consensus       882 ~~~~~~~~l~~h~~~V~~l~~s~d~~~l~-s~s~Dg~i~vwd~~~~~~~--~-~~~~~~~~~~~~~~~~i~~~~~s~dg~  957 (1106)
                      ..++....+.+ -..-+.++|+++++.+. +-+..+.|..++++.....  . ........+.   ......+++..+|+
T Consensus       136 ~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~---~g~pdG~~vD~~Gn  211 (295)
T d2ghsa1         136 AKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGI---KGGMDGSVCDAEGH  211 (295)
T ss_dssp             ETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTS---SSEEEEEEECTTSC
T ss_pred             cCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcc---cccccceEEcCCCC
Confidence            88876555543 33457899999998654 5566778888887542211  1 1111111111   13467899999999


Q ss_pred             EEEEE-eCCeEEEEecCCceEeeecccCCCCCCeeEEEEC-CCCCEEEEE
Q 001295          958 HFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFS-CDSQLVYAC 1005 (1106)
Q Consensus       958 ~l~~~-~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s-~d~~~l~t~ 1005 (1106)
                      +.++. ..+.|..||. .++.+..+...  ...+++++|- +|.+.|+..
T Consensus       212 lWva~~~~g~V~~~dp-~G~~~~~i~lP--~~~~T~~~FGG~d~~~LyvT  258 (295)
T d2ghsa1         212 IWNARWGEGAVDRYDT-DGNHIARYEVP--GKQTTCPAFIGPDASRLLVT  258 (295)
T ss_dssp             EEEEEETTTEEEEECT-TCCEEEEEECS--CSBEEEEEEESTTSCEEEEE
T ss_pred             EEeeeeCCCceEEecC-CCcEeeEecCC--CCceEEEEEeCCCCCEEEEE
Confidence            88875 6788999995 57787877653  3569999995 676666543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.17  E-value=0.00053  Score=70.13  Aligned_cols=232  Identities=12%  Similarity=0.064  Sum_probs=144.4

Q ss_pred             EEEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeCC
Q 001295          354 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR  433 (1106)
Q Consensus       354 ~~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d  433 (1106)
                      .+..|.+....|+.+--..+.|.-||.++++...      |               .....+.++++.++|+++++ +.+
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~------~---------------~~~~~~~~i~~~~dg~l~va-~~~   78 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKTV------H---------------ALPFMGSALAKISDSKQLIA-SDD   78 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE------E---------------ECSSCEEEEEEEETTEEEEE-ETT
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEE------E---------------ECCCCcEEEEEecCCCEEEE-EeC
Confidence            4677888665567766667899999999876532      1               11236889999999987765 455


Q ss_pred             CeEEEEEccCCceeeeeeeecc--ccCCeeEEEEcCCCCceEEEEecC----CCcEEEEeCCCCceeEEEeccCCCeEEE
Q 001295          434 HIVQIYSYHGGDEVRQHLEIDA--HVGGVNDIAFSHPNKQLCVITCGD----DKTIKVWDATNGAKQYIFEGHEAPVYSV  507 (1106)
Q Consensus       434 ~~v~iwd~~~~~~~~~~~~l~~--h~~~V~~~~~s~d~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~~~h~~~v~~~  507 (1106)
                      | |.++|..+++... +.....  ....++.+.+.|+|.  +.++...    .+.-.+|.+..++....+.. -...+.+
T Consensus        79 g-l~~~d~~tg~~~~-l~~~~~~~~~~~~nd~~vd~~G~--iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~  153 (295)
T d2ghsa1          79 G-LFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSI  153 (295)
T ss_dssp             E-EEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEE
T ss_pred             c-cEEeecccceeeE-EeeeecCCCcccceeeEECCCCC--EEEEeccccccccceeEeeecCCcEEEEeec-cCCccee
Confidence            4 8999999887432 212221  123588999999998  4554322    23456777667765544433 3445677


Q ss_pred             eccccCCceEEEEEecCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEEECC
Q 001295          508 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD  587 (1106)
Q Consensus       508 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  587 (1106)
                      +|+++.+ .++++-+..+.|..++++.......   ...  . +.....+       ..+....++++.+|+..++.-..
T Consensus       154 ~~s~d~~-~l~~~dt~~~~I~~~~~d~~~~~~~---~~~--~-~~~~~~~-------~~g~pdG~~vD~~GnlWva~~~~  219 (295)
T d2ghsa1         154 CFSPDGT-TGYFVDTKVNRLMRVPLDARTGLPT---GKA--E-VFIDSTG-------IKGGMDGSVCDAEGHIWNARWGE  219 (295)
T ss_dssp             EECTTSC-EEEEEETTTCEEEEEEBCTTTCCBS---SCC--E-EEEECTT-------SSSEEEEEEECTTSCEEEEEETT
T ss_pred             eecCCCc-eEEEeecccceeeEeeecccccccc---cce--E-EEeccCc-------ccccccceEEcCCCCEEeeeeCC
Confidence            8765543 4666777788999988764221110   000  0 0000000       01123445666777777777778


Q ss_pred             CeEEEEECCCcceeEEEccCCCCCCcCeEEEc-cCCCEEEEEe
Q 001295          588 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVST  629 (1106)
Q Consensus       588 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s-~~~~~l~~~~  629 (1106)
                      +.|..||. .|+.+..+....  ..+++++|- +|.+.|++.+
T Consensus       220 g~V~~~dp-~G~~~~~i~lP~--~~~T~~~FGG~d~~~LyvTt  259 (295)
T d2ghsa1         220 GAVDRYDT-DGNHIARYEVPG--KQTTCPAFIGPDASRLLVTS  259 (295)
T ss_dssp             TEEEEECT-TCCEEEEEECSC--SBEEEEEEESTTSCEEEEEE
T ss_pred             CceEEecC-CCcEeeEecCCC--CceEEEEEeCCCCCEEEEEE
Confidence            89999995 688888887653  358899996 5766665543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.99  E-value=0.008  Score=61.73  Aligned_cols=99  Identities=15%  Similarity=0.143  Sum_probs=65.6

Q ss_pred             eeEEEEecCCCEEEEEe--CCeEEEEEcCCCceee-----------eecCCCCCeeEEEEecCCCceEEEeeCCCcEEEE
Q 001295          813 VPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMA-----------TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY  879 (1106)
Q Consensus       813 v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~-----------~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iw  879 (1106)
                      ...+.++|||+++++++  +.++.|+|++......           .-....-.-...+|+. .|.-..+-.-|.+|.-|
T Consensus       277 PHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~-~g~aytslfids~v~kw  355 (459)
T d1fwxa2         277 PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDG-RGNAYTSLFLDSQVVKW  355 (459)
T ss_dssp             CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECT-TSEEEEEETTTTEEEEE
T ss_pred             CCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCC-CceEEEEeeccceEEEE
Confidence            45689999999999888  7999999986422110           0011122356678887 67666667789999999


Q ss_pred             Eeecc----------eEEEEecCcccCeeEE------EEecCCCEEEEEc
Q 001295          880 NVRVD----------EVKSKLKGHSKRITGL------AFSHALNVLVSSG  913 (1106)
Q Consensus       880 d~~~~----------~~~~~l~~h~~~V~~l------~~s~d~~~l~s~s  913 (1106)
                      ++...          ..+.++.-|-. +-.+      ...|||++|++..
T Consensus       356 ~~~~~~~~~~~~~~~~v~~k~~v~y~-~gh~~~~~g~t~~~dgk~l~~~n  404 (459)
T d1fwxa2         356 NIEDAIRAYAGEKVDPIKDKLDVHYQ-PGHLKTVMGETLDATNDWLVCLS  404 (459)
T ss_dssp             EHHHHHHHHHTCSCCCEEEEEECSSC-EEEEEETTTTSTTCCSSEEEEEE
T ss_pred             ecchhhhhhccccCCcceeccccccC-CCCCccCcCCcCCCCCCEEEEec
Confidence            98643          45555544432 1222      2358999999875

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.64  E-value=0.033  Score=53.90  Aligned_cols=242  Identities=9%  Similarity=0.081  Sum_probs=147.6

Q ss_pred             EEEEecCCCeEEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEeCCC
Q 001295          355 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH  434 (1106)
Q Consensus       355 ~~~~sp~g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~  434 (1106)
                      +.-.+|..+ +||.-+ ..++.|+|+++.+++....+                    ...|..-.|-.+ +.|+..+ +.
T Consensus        67 sAIMhP~~~-IiALra-g~~LQiFnletK~klks~~~--------------------~e~VvfWkWis~-~~L~lVT-~t  122 (327)
T d1utca2          67 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISL-NTVALVT-DN  122 (327)
T ss_dssp             EEEECSSSS-EEEEEE-TTEEEEEETTTTEEEEEEEC--------------------SSCCCEEEESSS-SEEEEEC-SS
T ss_pred             hhhcCCCCc-EEEEec-CCeEEEEehhHhhhhceEEc--------------------CCCcEEEEecCC-CEEEEEc-CC
Confidence            455778887 576655 56899999999988875322                    236777777654 4566554 45


Q ss_pred             eEEEEEccCCceeeeeeeecccc----CCeeEEEEcCCCCceEEEEe------cCCCcEEEEeCCCCceeEEEeccCCCe
Q 001295          435 IVQIYSYHGGDEVRQHLEIDAHV----GGVNDIAFSHPNKQLCVITC------GDDKTIKVWDATNGAKQYIFEGHEAPV  504 (1106)
Q Consensus       435 ~v~iwd~~~~~~~~~~~~l~~h~----~~V~~~~~s~d~~~~~l~s~------~~d~~i~iwd~~~~~~~~~~~~h~~~v  504 (1106)
                      .|.=|++++...  +...+..|.    ..|..-..+++.+++ +++|      +-.|.+.+|..+. +.-+.++||.+.-
T Consensus       123 aVYHW~~~g~s~--P~k~fdR~~~L~~~QIInY~~d~~~kW~-~l~GI~~~~~~i~G~mQLYS~er-~~sQ~ieGhaa~F  198 (327)
T d1utca2         123 AVYHWSMEGESQ--PVKMFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASF  198 (327)
T ss_dssp             EEEEEESSSSCC--CEEEEECCGGGTTCEEEEEEECTTSCEE-EEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEE
T ss_pred             ceEEEcccCCCC--chhhhhhcccccCceEEEEEECCCCCEE-EEEeEecCCCceeEEEEEEEecc-CcCccccceeeee
Confidence            699999975443  223444443    357777788889863 3333      1246788999654 4467888887766


Q ss_pred             EEEeccccCCce-EEEEEe---cCCeEEEEeCCCCCc-eeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCC
Q 001295          505 YSVCPHHKENIQ-FIFSTA---LDGKIKAWLYDNLGS-RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN  579 (1106)
Q Consensus       505 ~~~~~~~~~~~~-~l~s~~---~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~  579 (1106)
                      ..+.+....... +++.+.   ..+.+++-++..... ...   .......+-|.|+..       ..--..+.+++.-.
T Consensus       199 ~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~---f~kk~vdi~fppea~-------~DFPvamqvs~kyg  268 (327)
T d1utca2         199 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQP---FPKKAVDVFFPPEAQ-------NDFPVAMQISEKHD  268 (327)
T ss_dssp             EEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCC---CCCEEEECCCCTTCT-------TCCEEEEEEETTTT
T ss_pred             EEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCC---CcceeEEEECCcccc-------CCcEEEEEeeccCC
Confidence            666543333222 333322   236788888765321 111   112233444555432       12334466677777


Q ss_pred             EEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEE
Q 001295          580 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI  636 (1106)
Q Consensus       580 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i  636 (1106)
                      .+...+.-|.|++||+.++.++..-+....  .|...+-+.+..-+++...+|.|..
T Consensus       269 iiyviTK~G~i~lyDleTgt~i~~nRIs~~--~iF~~a~~~~~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         269 VVFLITKYGYIHLYDLETGTCIYMNRISGE--TIFVTAPHEATAGIIGVNRKGQVLS  323 (327)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEEETTTTEEEEEETTSEEEE
T ss_pred             EEEEEecCcEEEEEEcccccEEEEeecCCC--ceEEeccCCCCceEEEECCCCeEEE
Confidence            888899999999999999999887765433  4444444444444555556666543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.58  E-value=0.047  Score=60.79  Aligned_cols=59  Identities=15%  Similarity=0.049  Sum_probs=42.8

Q ss_pred             CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295          965 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus       965 ~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
                      +.|.-+|+.+++.+-......   +..+=.++-.+.++++|+.||.++.+|.++|+.+-++.
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~---~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~  502 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKF---AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK  502 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESS---CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ccEEEeccCCCceeeEcCCCC---CCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEE
Confidence            578889999998876554321   11111122246688889999999999999999998887

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.58  E-value=0.0051  Score=63.23  Aligned_cols=191  Identities=14%  Similarity=0.141  Sum_probs=122.8

Q ss_pred             cCCCEEEEEe--CCeEEEEEcCCCceeeeecC-CCCCeeEEEEecC-CCceEEEeeCCC------------------cEE
Q 001295          820 KNDSYVMSAS--GGKISLFNMMTFKTMATFMP-PPPAATFLAFHPQ-DNNIIAIGMDDS------------------SIQ  877 (1106)
Q Consensus       820 ~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~-~~~~v~~l~~s~~-d~~~la~g~~dg------------------~v~  877 (1106)
                      +||+++.+..  ++.|.+.|+++.++.+.... ....+..+...++ ...|++.++++.                  .+.
T Consensus        97 yDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t  176 (459)
T d1fwxa2          97 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  176 (459)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEE
T ss_pred             cceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEE
Confidence            4899999998  68899999999988664432 3345666666541 345666665532                  366


Q ss_pred             EEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCC---------------cEEEEeC-------------------
Q 001295          878 IYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS---------------QLCVWSS-------------------  923 (1106)
Q Consensus       878 iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg---------------~i~vwd~-------------------  923 (1106)
                      ++|..+.+...++.- .+....+++++||+++++.+.+.               .+.+++.                   
T Consensus       177 ~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~  255 (459)
T d1fwxa2         177 AVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  255 (459)
T ss_dssp             EEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCce
Confidence            788888887766543 23466799999999999876431               1233332                   


Q ss_pred             ----CCcccccceee-cccCCCCCCCCCCceEEEcCCCcEEEEE--eCCeEEEEecCCceEee--------ecc-cCCCC
Q 001295          924 ----DGWEKQKNRFL-QIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLECVK--------QWV-PRESS  987 (1106)
Q Consensus       924 ----~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~s~dg~~l~~~--~d~~v~i~d~~~~~~~~--------~~~-~~~h~  987 (1106)
                          .....  ...+ .+..+     .....+.++|||++++++  .+.++.|+|+++.....        .+. .....
T Consensus       256 VVD~~~~~~--~~v~~yIPVp-----KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elg  328 (459)
T d1fwxa2         256 VVDGRKEAS--SLFTRYIPIA-----NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG  328 (459)
T ss_dssp             EEECSGG----CSSEEEEEEE-----SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCC
T ss_pred             eecccccCC--cceeEEEecC-----CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccC
Confidence                21100  0010 11111     345789999999999995  67899999997543210        000 00124


Q ss_pred             CCeeEEEECCCCCEEEEEEcCCeEEEEEcCC
Q 001295          988 APITHATFSCDSQLVYACFLDATVCVFSAAN 1018 (1106)
Q Consensus       988 ~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~ 1018 (1106)
                      -.....+|+.+|.-..|-.-|..|.-|++..
T Consensus       329 lgPLht~fd~~g~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         329 LGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             SCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             cCccccccCCCceEEEEeeccceEEEEecch
Confidence            4567889988886555666899999999853

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.56  E-value=0.019  Score=60.94  Aligned_cols=260  Identities=15%  Similarity=0.081  Sum_probs=133.6

Q ss_pred             cccCCCCCCccccccCCCCCCCCeeEEEEecCCCEEEEEe-C-CeEEEEEcCCCceeeeecCC-CCCeeEEEEecCCCce
Q 001295          790 QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-G-GKISLFNMMTFKTMATFMPP-PPAATFLAFHPQDNNI  866 (1106)
Q Consensus       790 ~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-d-g~i~vwd~~~~~~~~~~~~~-~~~v~~l~~s~~d~~~  866 (1106)
                      .+||+.++...........+.......++.+++++++.|. + ..+.+||..+......-... ...-.+++..+ |+++
T Consensus        55 ~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~-dG~v  133 (387)
T d1k3ia3          55 SSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRV  133 (387)
T ss_dssp             EEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCE
T ss_pred             EEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeec-CCce
Confidence            3566666654332111112344455678889999999987 3 67999999876543221111 11234566667 8899


Q ss_pred             EEEeeCC------CcEEEEEeecceEEEE--ec-------Cccc-----CeeEEEEecCCCEEEEEcCCCcEEEEeCCCc
Q 001295          867 IAIGMDD------SSIQIYNVRVDEVKSK--LK-------GHSK-----RITGLAFSHALNVLVSSGADSQLCVWSSDGW  926 (1106)
Q Consensus       867 la~g~~d------g~v~iwd~~~~~~~~~--l~-------~h~~-----~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~  926 (1106)
                      ++.|+.+      ..+.+||..+.+-...  ..       .+..     .-..+...++|+.++.++.++.+.+++..+.
T Consensus       134 ~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~  213 (387)
T d1k3ia3         134 FTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSG  213 (387)
T ss_dssp             EEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTC
T ss_pred             eeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccC
Confidence            9988753      3689999877542211  00       0111     1112334467888888887777777777764


Q ss_pred             ccccceeecccCCCCCCCCCCceEEE-cCCCcEEEEE-eC--------CeEEEEecCC---ceEe-eecccCCCCCCeeE
Q 001295          927 EKQKNRFLQIPTGRTPTAQSDTRVQF-HQDQIHFLVV-HE--------TQLAIFETTK---LECV-KQWVPRESSAPITH  992 (1106)
Q Consensus       927 ~~~~~~~~~~~~~~~~~~~~i~~~~~-s~dg~~l~~~-~d--------~~v~i~d~~~---~~~~-~~~~~~~h~~~v~~  992 (1106)
                      .-..................-.++.+ ..+++.++.+ ..        ....+.++..   .... .....-.+...-.+
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~  293 (387)
T d1k3ia3         214 DVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHT  293 (387)
T ss_dssp             EEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCE
T ss_pred             cEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccce
Confidence            42221111111111110011122333 3467766663 21        1233333322   1111 11110011222345


Q ss_pred             EEECCCCCEEEEEEcCC-----------eEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEE-EeCCCCCEEEEEeC
Q 001295          993 ATFSCDSQLVYACFLDA-----------TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIA-AHPQEPNEFALGLS 1060 (1106)
Q Consensus       993 l~~s~d~~~l~t~s~Dg-----------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d~~~l~t~~~ 1060 (1106)
                      ....+||++++.|+.+.           ++.+||.++.+-... .. ...+..     -+  +.+ ..+ ||+.++.|+.
T Consensus       294 ~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~-~~-~~~~R~-----~H--s~a~l~~-dG~v~v~GG~  363 (387)
T d1k3ia3         294 SVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQ-NP-NSIVRV-----YH--SISLLLP-DGRVFNGGGG  363 (387)
T ss_dssp             EEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEEC-CC-CSSCCC-----TT--EEEEECT-TSCEEEEECC
T ss_pred             eeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEEC-CC-CCCccc-----ce--EEEEECC-CCEEEEEeCC
Confidence            66678999999888531           578999888764322 11 111111     11  222 345 7999999884

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.45  E-value=0.053  Score=60.30  Aligned_cols=81  Identities=15%  Similarity=0.010  Sum_probs=52.1

Q ss_pred             CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCccc-CeeEEEEecCCC-
Q 001295          830 GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK-RITGLAFSHALN-  907 (1106)
Q Consensus       830 dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~-~V~~l~~s~d~~-  907 (1106)
                      .|.|.-+|+.+++.+-+.......... .++- .+.++++|+.||.++-+|.++|+.+-+++-... .-.-+.|..||+ 
T Consensus       443 ~G~l~AiD~~TG~~~W~~~~~~~~~~g-~l~T-agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkq  520 (571)
T d2ad6a1         443 MGQIRAFDLTTGKAKWTKWEKFAAWGG-TLYT-KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQ  520 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEESSCCCSB-CEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             cccEEEeccCCCceeeEcCCCCCCCcc-eeEe-cCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEE
Confidence            368899999999887665422111111 1222 345777899999999999999999977753222 122366777886 


Q ss_pred             EEEEE
Q 001295          908 VLVSS  912 (1106)
Q Consensus       908 ~l~s~  912 (1106)
                      ++++.
T Consensus       521 Yi~v~  525 (571)
T d2ad6a1         521 YIGSM  525 (571)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            44443

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.43  E-value=0.042  Score=54.10  Aligned_cols=204  Identities=10%  Similarity=-0.018  Sum_probs=132.4

Q ss_pred             CCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEE
Q 001295          810 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK  887 (1106)
Q Consensus       810 ~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~  887 (1106)
                      ...+..++|.+..+.|....  ++.|+..++........+......+..+++....+++..+-...+.|.+.++......
T Consensus        35 ~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~  114 (263)
T d1npea_          35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR  114 (263)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEE
Confidence            34477899998888888776  5889999987665554454444578999998745555556666789999998765433


Q ss_pred             EEecCcccCeeEEEEecCCCEEEEEcCC-CcEEEE--eCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE--
Q 001295          888 SKLKGHSKRITGLAFSHALNVLVSSGAD-SQLCVW--SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--  962 (1106)
Q Consensus       888 ~~l~~h~~~V~~l~~s~d~~~l~s~s~D-g~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~--  962 (1106)
                      ..+.........+++.|...+|...... +..+||  +++....  .....  .+.    ..+..+++.+.++.|..+  
T Consensus       115 ~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~--~~i~~--~~~----~~P~glaiD~~~~~lYw~d~  186 (263)
T d1npea_         115 VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR--RILAQ--DNL----GLPNGLTFDAFSSQLCWVDA  186 (263)
T ss_dssp             EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC--EEEEC--TTC----SCEEEEEEETTTTEEEEEET
T ss_pred             EEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc--eeeee--ecc----cccceEEEeecCcEEEEEeC
Confidence            3333344678899999987777655432 333455  4444221  11111  111    245789999888777664  


Q ss_pred             eCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEE-EEEcCCeEEEEEcCCceeEEeeC
Q 001295          963 HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVY-ACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus       963 ~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~-t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
                      ..+.|...++........+.  + .....+|++.  +.+|+ +-...+.|...|..+++.+..+.
T Consensus       187 ~~~~I~~~~~~g~~~~~v~~--~-~~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~  246 (263)
T d1npea_         187 GTHRAECLNPAQPGRRKVLE--G-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (263)
T ss_dssp             TTTEEEEEETTEEEEEEEEE--C-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             CCCEEEEEECCCCCeEEEEC--C-CCCcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEEC
Confidence            56789999997665443332  2 2234678775  44554 44466889999999998876654

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=0.033  Score=55.03  Aligned_cols=208  Identities=6%  Similarity=-0.045  Sum_probs=128.2

Q ss_pred             CCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCCc----eeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeec
Q 001295          810 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFK----TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV  883 (1106)
Q Consensus       810 ~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~----~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~  883 (1106)
                      ...+.++.|++..+.|....  .+.|.-.++....    ....+......+..+++.+..+++..+-...+.|.+.++..
T Consensus        29 ~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g  108 (266)
T d1ijqa1          29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  108 (266)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCC
Confidence            44577899999888888776  4677766665321    11223333455778999874555666556677899999887


Q ss_pred             ceEEEEecCcccCeeEEEEecCCCEEEEEc--CCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE
Q 001295          884 DEVKSKLKGHSKRITGLAFSHALNVLVSSG--ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV  961 (1106)
Q Consensus       884 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s--~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~  961 (1106)
                      ......+........++++.|...+|....  ..+.|.-.+++....   ..+.. .+.    ..+..+++.+.++.|..
T Consensus       109 ~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~---~~l~~-~~~----~~p~gl~iD~~~~~lYw  180 (266)
T d1ijqa1         109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YSLVT-ENI----QWPNGITLDLLSGRLYW  180 (266)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE---EEEEC-SSC----SCEEEEEEETTTTEEEE
T ss_pred             ceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCce---ecccc-ccc----ceeeEEEeeccccEEEE
Confidence            665555555666788999998766666543  334566666655321   11111 111    24578999998877766


Q ss_pred             E--eCCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295          962 V--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus       962 ~--~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
                      +  ..+.|...++....+..............+|++. ++....+-..++.|+..+..++.....+.
T Consensus       181 ~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g~~~~~~~  246 (266)
T d1ijqa1         181 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA  246 (266)
T ss_dssp             EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             ecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEECCCCcceEEEE
Confidence            4  5678999998765543333322223456677776 23334444466788888877776555444

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.42  E-value=0.028  Score=62.58  Aligned_cols=149  Identities=11%  Similarity=0.035  Sum_probs=91.8

Q ss_pred             cEEEEEeecceEEEEecCcccCeeE---------EEEecCC---CEEEEEcCCCcEEEEeCCCcccccceeecc------
Q 001295          875 SIQIYNVRVDEVKSKLKGHSKRITG---------LAFSHAL---NVLVSSGADSQLCVWSSDGWEKQKNRFLQI------  936 (1106)
Q Consensus       875 ~v~iwd~~~~~~~~~l~~h~~~V~~---------l~~s~d~---~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~------  936 (1106)
                      .|.-.|+.+++.+-.++.....+..         +....++   ..++.++.+|.+.++|-.+++.........      
T Consensus       271 sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~  350 (560)
T d1kv9a2         271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEK  350 (560)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEE
T ss_pred             eeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccc
Confidence            4666678888877665543222221         2222344   367788899999999999887543211100      


Q ss_pred             -----------cC-----------CCCCCCCCCceEEEcCCCcEEEE-Ee------------------------------
Q 001295          937 -----------PT-----------GRTPTAQSDTRVQFHQDQIHFLV-VH------------------------------  963 (1106)
Q Consensus       937 -----------~~-----------~~~~~~~~i~~~~~s~dg~~l~~-~~------------------------------  963 (1106)
                                 ..           ........-...+++|+...+.+ ..                              
T Consensus       351 ~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (560)
T d1kv9a2         351 VDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATD  430 (560)
T ss_dssp             ECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCC
T ss_pred             cChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccC
Confidence                       00           00000001135678888777765 22                              


Q ss_pred             ------CCeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295          964 ------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus       964 ------d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
                            .+.+.-||+.+++.+-......+   ..+-.++-.+.++++|+.||.++.+|.++|+.+-++.
T Consensus       431 ~p~~~~~G~l~A~D~~tGk~~W~~~~~~~---~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~  496 (560)
T d1kv9a2         431 VPAAVVSGALLAWDPVKQKAAWKVPYPTH---WNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFE  496 (560)
T ss_dssp             CCGGGCEEEEEEEETTTTEEEEEEEESSS---CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCCcccccceEEEeCCCCeEeeeccCCCC---CCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEE
Confidence                  14678899999988776654332   2222233357788889999999999999999998887

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.42  E-value=0.053  Score=60.57  Aligned_cols=79  Identities=15%  Similarity=0.074  Sum_probs=51.1

Q ss_pred             CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccC-eeEEEEecCCCE-
Q 001295          831 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR-ITGLAFSHALNV-  908 (1106)
Q Consensus       831 g~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~s~d~~~-  908 (1106)
                      |.|.-||..+++.+-.... ......=.++- .+.+++.|+.||.++-+|..+|+.+-+++-.... -.-+.|..||+. 
T Consensus       453 G~l~A~D~~TG~~~W~~~~-~~~~~gg~lsT-agglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQY  530 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKME-RFAVWGGTMAT-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQY  530 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEE-SSCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             ceEEEEeCCCCceecccCC-CCCCccceeEe-cCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEE
Confidence            6788888888887655431 11222222233 4567878999999999999999999877543221 122556778864 


Q ss_pred             EEE
Q 001295          909 LVS  911 (1106)
Q Consensus       909 l~s  911 (1106)
                      |+.
T Consensus       531 vav  533 (596)
T d1w6sa_         531 VAI  533 (596)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.41  E-value=0.09  Score=58.63  Aligned_cols=59  Identities=15%  Similarity=0.137  Sum_probs=44.4

Q ss_pred             CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295          965 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus       965 ~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
                      |.+.-+|+.+++.+-.....   .++.+=.++..+.++++|+.||.++-+|.+||+.+-++.
T Consensus       466 G~l~AiD~~TG~i~W~~~~~---~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~  524 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEH---LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ  524 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEES---SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CeEEEEcCCCCcEEeecCCC---CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEE
Confidence            56888899999887665432   222222234567788889999999999999999998887

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.38  E-value=0.1  Score=58.08  Aligned_cols=59  Identities=12%  Similarity=0.092  Sum_probs=43.5

Q ss_pred             CeEEEEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295          965 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus       965 ~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
                      +.|.-||+.+++.+-....   ..++.+=.++-.|.++++|+.||.++.+|..+|+.+-++.
T Consensus       453 G~l~A~D~~TG~~~W~~~~---~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~  511 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKME---RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFK  511 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEE---SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ceEEEEeCCCCceecccCC---CCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEE
Confidence            5788899999887655432   2222222233467788889999999999999999998887

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.38  E-value=0.071  Score=51.53  Aligned_cols=232  Identities=11%  Similarity=0.137  Sum_probs=133.3

Q ss_pred             EcCCCCEEEEEECCCeEEEEECCCcceeEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCCchhhhhhcccc
Q 001295          574 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA  653 (1106)
Q Consensus       574 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  653 (1106)
                      .+|..+.++.-+ ...+.++|+++.+.+..+...+.   |.--.|-.+ +.|+..+. ..|+-|++.....+.+.+..|.
T Consensus        70 MhP~~~IiALra-g~~LQiFnletK~klks~~~~e~---VvfWkWis~-~~L~lVT~-taVYHW~~~g~s~P~k~fdR~~  143 (327)
T d1utca2          70 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD---VTFWKWISL-NTVALVTD-NAVYHWSMEGESQPVKMFDRHS  143 (327)
T ss_dssp             ECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSC---CCEEEESSS-SEEEEECS-SEEEEEESSSSCCCEEEEECCG
T ss_pred             cCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCC---cEEEEecCC-CEEEEEcC-CceEEEcccCCCCchhhhhhcc
Confidence            445555555544 66899999999999988876643   666667644 45555544 5789999854433333332221


Q ss_pred             cccccCCCCCCCCcCchhhhHhhhhcccccccccccccccCCCCCCccccCCCCccccccCCCceeeEecCCCCCCccce
Q 001295          654 YDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCR  733 (1106)
Q Consensus       654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~  733 (1106)
                      .                                                                               
T Consensus       144 ~-------------------------------------------------------------------------------  144 (327)
T d1utca2         144 S-------------------------------------------------------------------------------  144 (327)
T ss_dssp             G-------------------------------------------------------------------------------
T ss_pred             c-------------------------------------------------------------------------------
Confidence            1                                                                               


Q ss_pred             ecccCccccccceEEEEEcCCCceEEEeec-------CceEEEeecccccc-CCCCccccccCccccCCCCCCccccccC
Q 001295          734 SLRLPENLRATKISRLIFTNSGNAILALAS-------NAIHLLWKWQRTER-NSSGKATASVAPQLWQPPSGIMMTNDVT  805 (1106)
Q Consensus       734 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-------dg~i~iw~~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~  805 (1106)
                             ....+|..-..+++.++++..|-       .|.+.+|..+.... ..+|..             +......+.
T Consensus       145 -------L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGha-------------a~F~~~~~~  204 (327)
T d1utca2         145 -------LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHA-------------ASFAQFKME  204 (327)
T ss_dssp             -------GTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSE-------------EEEEEECCT
T ss_pred             -------ccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCcccccee-------------eeeEEEEcC
Confidence                   12355666677777776655442       26667776553211 011111             111111122


Q ss_pred             CCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCc---ee-----eeec----CCCCCeeEEEEecCCCceEEEeeC
Q 001295          806 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFK---TM-----ATFM----PPPPAATFLAFHPQDNNIIAIGMD  872 (1106)
Q Consensus       806 ~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~---~~-----~~~~----~~~~~v~~l~~s~~d~~~la~g~~  872 (1106)
                      +..+...+.|.+.  .      +. .++++|.++.+..   ..     ..+.    ...+-..++.+|+ .-.++..-+.
T Consensus       205 g~~~~~~lf~fa~--r------~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~-kygiiyviTK  275 (327)
T d1utca2         205 GNAEESTLFCFAV--R------GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITK  275 (327)
T ss_dssp             TCSSCEEEEEEEE--E------ETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEET-TTTEEEEEET
T ss_pred             CCCCCceEEEEEE--C------CCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeec-cCCEEEEEec
Confidence            2111122222221  1      11 3789999986521   11     1111    1133457888888 6678888899


Q ss_pred             CCcEEEEEeecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEE
Q 001295          873 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLC  919 (1106)
Q Consensus       873 dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~  919 (1106)
                      -|.|++||+.++.++..-+-..+.|..-+-..+..=++....+|.|.
T Consensus       276 ~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         276 YGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             TSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             CcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence            99999999999999887776677777666555555566666777654

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.37  E-value=0.0026  Score=71.68  Aligned_cols=153  Identities=9%  Similarity=0.087  Sum_probs=88.2

Q ss_pred             ceEEEeeCCCcEEEEEeecceEEEEecCcc----------------------------------c-CeeEEEEecCCCEE
Q 001295          865 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHS----------------------------------K-RITGLAFSHALNVL  909 (1106)
Q Consensus       865 ~~la~g~~dg~v~iwd~~~~~~~~~l~~h~----------------------------------~-~V~~l~~s~d~~~l  909 (1106)
                      ..++.++.+|.++++|..+|+.+.......                                  . .-..++++|+...+
T Consensus       328 ~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~  407 (573)
T d1kb0a2         328 KVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLV  407 (573)
T ss_dssp             EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEE
T ss_pred             eeeeeccccceeEEeccccccccccccccccccccccccccceeeeeeccccccceEEeecccCCccccccccCCCcceE
Confidence            467888899999999999988765432110                                  0 01234678888888


Q ss_pred             EEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEeCCeEEEEecCCceEeeecccCCCCCC
Q 001295          910 VSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAP  989 (1106)
Q Consensus       910 ~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~d~~v~i~d~~~~~~~~~~~~~~h~~~  989 (1106)
                      +....+....++.....+....     ..+............+ +++.-.....-+.+.-||+.+++.+-.....   .+
T Consensus       408 yv~~~~~~~~~~~~~~~~~~~~-----~~~~~~~g~~~~~~~~-~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~---~p  478 (573)
T d1kb0a2         408 YLPAQNVPVNLMDDKKWEFNQA-----GPGKPQSGTGWNTAKF-FNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV---SP  478 (573)
T ss_dssp             EEEEEECCCEEEECTTCCTTCC-----CTTSTTGGGTCCCCEE-ECSSCCCSCCEEEEEEEETTTTEEEEEEEES---SS
T ss_pred             EeeccccceeeecccccccccC-----CCCccccccccccccc-cccCCCCCCCcccEEEeCCCCCceEeeecCC---CC
Confidence            8777777666665554322110     0000000000000000 0000000011256888999999887665432   12


Q ss_pred             eeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEeeC
Q 001295          990 ITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1026 (1106)
Q Consensus       990 v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1026 (1106)
                      ...=.++-.|.++++|+.||.++.+|..+|+.+-.+.
T Consensus       479 ~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~  515 (573)
T d1kb0a2         479 WNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP  515 (573)
T ss_dssp             CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEE
Confidence            2211233468888899999999999999999998887

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.35  E-value=0.031  Score=62.19  Aligned_cols=81  Identities=12%  Similarity=0.130  Sum_probs=51.8

Q ss_pred             CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCe-eEEEEecCCC-E
Q 001295          831 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI-TGLAFSHALN-V  908 (1106)
Q Consensus       831 g~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V-~~l~~s~d~~-~  908 (1106)
                      |.|.-||+.+++.+-...... ....-.++- .+.+++.|+.||.++-+|..+|+.+-+++-..... .-+.|..||+ +
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~-~~~gg~l~T-agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqy  515 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPT-HWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQY  515 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             cceEEEeCCCCeEeeeccCCC-CCCCceeEE-CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            457788888888776544211 121112233 45678889999999999999999998776432211 2256677886 4


Q ss_pred             EEEEc
Q 001295          909 LVSSG  913 (1106)
Q Consensus       909 l~s~s  913 (1106)
                      |+..+
T Consensus       516 v~v~a  520 (560)
T d1kv9a2         516 VAIMA  520 (560)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            55443

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.33  E-value=0.052  Score=53.37  Aligned_cols=229  Identities=14%  Similarity=0.083  Sum_probs=140.3

Q ss_pred             CCEEEEEeCCeEEEEEcCCCcee-----eeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccC
Q 001295          822 DSYVMSASGGKISLFNMMTFKTM-----ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR  896 (1106)
Q Consensus       822 ~~~l~~~sdg~i~vwd~~~~~~~-----~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~  896 (1106)
                      |.+|+.+..+.|+-.+++.....     ..+..+...+.+++|.+.+++++.+-..++.|+..++..+.....+..-...
T Consensus         1 ~~fLl~s~~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~   80 (263)
T d1npea_           1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS   80 (263)
T ss_dssp             CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred             CCEEEEeCCCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEecccc
Confidence            45677777778888887644322     1122233457889999844444444456678888888765544444444456


Q ss_pred             eeEEEEecCCCEEE-EEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEe--CC--eEEEEe
Q 001295          897 ITGLAFSHALNVLV-SSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH--ET--QLAIFE  971 (1106)
Q Consensus       897 V~~l~~s~d~~~l~-s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~--d~--~v~i~d  971 (1106)
                      +.++++..-+..|. +-...+.|.+.+++....   ..+.. .+ .   ..+..+++.|...+|....  .+  .|.-.+
T Consensus        81 p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~---~~l~~-~~-l---~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~  152 (263)
T d1npea_          81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR---RVLFD-TG-L---VNPRGIVTDPVRGNLYWTDWNRDNPKIETSH  152 (263)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEEC-SS-C---SSEEEEEEETTTTEEEEEECCSSSCEEEEEE
T ss_pred             ccEEEEeccCCeEEEeccCCCEEEEEecCCceE---EEEec-cc-c---cCCcEEEEecccCcEEEeecCCCCcEEEEec
Confidence            88999986666665 445667899999876432   11111 11 1   2568899999877776642  22  354445


Q ss_pred             cCCceEeeecccCCCCCCeeEEEECCCCCEEEEE-EcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCC
Q 001295          972 TTKLECVKQWVPRESSAPITHATFSCDSQLVYAC-FLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ 1050 (1106)
Q Consensus       972 ~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~-s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 1050 (1106)
                      +..........  ..-.....|++.+.++.|.-+ ...++|...+++.......+.       +    .-.|.+++..  
T Consensus       153 ~dG~~~~~i~~--~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~-------~----~~~P~~lav~--  217 (263)
T d1npea_         153 MDGTNRRILAQ--DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE-------G----LQYPFAVTSY--  217 (263)
T ss_dssp             TTSCCCEEEEC--TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE-------C----CCSEEEEEEE--
T ss_pred             CCCCCceeeee--ecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEEC-------C----CCCcEEEEEE--
Confidence            55443322221  224567899999888877555 456789999987655433322       1    0224567776  


Q ss_pred             CCCEEEEEeCCCcEEEEeecCCC
Q 001295         1051 EPNEFALGLSDGGVHVFEPLESE 1073 (1106)
Q Consensus      1051 d~~~l~t~~~Dg~v~vW~~~~~~ 1073 (1106)
                      ++.+..+-...+.|..-+..+++
T Consensus       218 ~~~lYwtd~~~~~I~~~~~~~g~  240 (263)
T d1npea_         218 GKNLYYTDWKTNSVIAMDLAISK  240 (263)
T ss_dssp             TTEEEEEETTTTEEEEEETTTTE
T ss_pred             CCEEEEEECCCCEEEEEECCCCc
Confidence            34556666677888888887776

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.27  E-value=0.049  Score=60.74  Aligned_cols=76  Identities=9%  Similarity=0.056  Sum_probs=50.1

Q ss_pred             CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccCe-eEEEEecCCCE
Q 001295          831 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI-TGLAFSHALNV  908 (1106)
Q Consensus       831 g~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V-~~l~~s~d~~~  908 (1106)
                      |.|.-||+.+++.+-...... +...=..+- .+.+|++|+.||.++.+|..+|+.+-+++-..... .-+.|..||+.
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lst-agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQ  533 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQ  533 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             ccEEEeCCCCCceEeeecCCC-CCCCceEEE-cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            578888888888776654322 111112233 56688889999999999999999998775432211 11556678863

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.12  Score=50.86  Aligned_cols=232  Identities=11%  Similarity=0.032  Sum_probs=127.3

Q ss_pred             EEEEEeccCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEEEEEe-CCCeEEEEEccC
Q 001295          365 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY-SRHIVQIYSYHG  443 (1106)
Q Consensus       365 llatg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~-~d~~v~iwd~~~  443 (1106)
                      ||++-  ...|+-.++.+.....                    +......+.+++|.+..++|.-.. .++.|.-.++..
T Consensus         4 Ll~s~--~~~I~~~~l~~~~~~~--------------------~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~   61 (266)
T d1ijqa1           4 LFFTN--RHEVRKMTLDRSEYTS--------------------LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDR   61 (266)
T ss_dssp             EEEEC--BSSEEEEETTSCCCEE--------------------EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--
T ss_pred             EEEEC--CCeEEEEECCCCccee--------------------eeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecC
Confidence            45543  3568888887654322                    122344678999999777776554 456677666654


Q ss_pred             Cceeeee-eeeccccCCeeEEEEcCCCCceEEEEecCCCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEe
Q 001295          444 GDEVRQH-LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA  522 (1106)
Q Consensus       444 ~~~~~~~-~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~  522 (1106)
                      ....... ..+......+..+++.+.++. +..+-...+.|.+.++........+.........+++++. .|.++++..
T Consensus        62 ~~~~~~~~~~~~~~~~~p~glAvD~~~~~-lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~-~g~ly~~~~  139 (266)
T d1ijqa1          62 AHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDW  139 (266)
T ss_dssp             ------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT-TTEEEEEEC
T ss_pred             CCCCcceEEEEeCCCCCcceEEEeeccce-EEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcc-cCeEEEecc
Confidence            2211111 112233356778999887776 4455567789999998766655555555667788887654 334444432


Q ss_pred             -cCCeEEEEeCCCCCceeEeeCCCCeeEEEEEecCCCeEEEeeeccceeEEEEcCCCCEEEEE-ECCCeEEEEECCCcce
Q 001295          523 -LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA-GDDFSIKFWDMDSVQL  600 (1106)
Q Consensus       523 -~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~  600 (1106)
                       ..+.|...+++.................++                     +++.++.|..+ ...+.|...++.....
T Consensus       140 ~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~---------------------iD~~~~~lYw~d~~~~~I~~~~~dG~~~  198 (266)
T d1ijqa1         140 GTPAKIKKGGLNGVDIYSLVTENIQWPNGIT---------------------LDLLSGRLYWVDSKLHSISSIDVNGGNR  198 (266)
T ss_dssp             SSSCEEEEEETTSCCEEEEECSSCSCEEEEE---------------------EETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCCcceeEeccCCCceecccccccceeeEEE---------------------eeccccEEEEecCCcCEEEEEECCCCCE
Confidence             234555555543322222222222334444                     44444445544 4567888888865544


Q ss_pred             eEEEccCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEccCC
Q 001295          601 LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  642 (1106)
Q Consensus       601 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  642 (1106)
                      ..............++++. ++.+..+-..++.|...+..++
T Consensus       199 ~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g  239 (266)
T d1ijqa1         199 KTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG  239 (266)
T ss_dssp             EEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred             EEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEECCCC
Confidence            3333333222233456665 3334444446677777776665

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.10  E-value=0.072  Score=56.14  Aligned_cols=258  Identities=9%  Similarity=0.019  Sum_probs=129.7

Q ss_pred             eeeEecCCCCCCccceecccCccccccceEEEEEcCCCceEEEeecC-ceEEEeeccccccCCCCccccccCccccCCCC
Q 001295          718 SKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN-AIHLLWKWQRTERNSSGKATASVAPQLWQPPS  796 (1106)
Q Consensus       718 i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~  796 (1106)
                      +.+||.....-.... ...   ..+.......++.++++.++.++.+ ..+.+||..+..               |....
T Consensus        54 ~~~yd~~t~~w~~~~-~~~---~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~---------------w~~~~  114 (387)
T d1k3ia3          54 TSSWDPSTGIVSDRT-VTV---TKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDS---------------WIPGP  114 (387)
T ss_dssp             EEEECTTTCCBCCCE-EEE---CSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTE---------------EEECC
T ss_pred             EEEEECCCCcEeecC-CCC---CCcccceeEEEEecCCcEEEeecCCCcceeEecCccCc---------------ccccc
Confidence            567888754322111 111   1122333466788999988888765 678888876432               21100


Q ss_pred             CCccccccCCCCCCCCeeEEEEecCCCEEEEEe-C------CeEEEEEcCCCceeeeec--------C-CC-----CCee
Q 001295          797 GIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-G------GKISLFNMMTFKTMATFM--------P-PP-----PAAT  855 (1106)
Q Consensus       797 ~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-d------g~i~vwd~~~~~~~~~~~--------~-~~-----~~v~  855 (1106)
                       .     +   .....-.+.+..+||++++.|+ +      ..+.+||..+.+....-.        . +.     ..-.
T Consensus       115 -~-----~---~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (387)
T d1k3ia3         115 -D-----M---QVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHA  185 (387)
T ss_dssp             -C-----C---SSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSC
T ss_pred             -c-----c---cccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeecccee
Confidence             0     0   0122234677788999999886 2      358999988754321100        0 00     0011


Q ss_pred             EEEEecCCCceEEEeeCCCcEEEEEeecceEEEEe--cC----cccCe--eEEEE-ecCCCEEEEEcCCC--------cE
Q 001295          856 FLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL--KG----HSKRI--TGLAF-SHALNVLVSSGADS--------QL  918 (1106)
Q Consensus       856 ~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l--~~----h~~~V--~~l~~-s~d~~~l~s~s~Dg--------~i  918 (1106)
                      .+...+ ++++++.+..++.+.+++..+.......  ..    +....  .++.+ ..+++.++.|+...        ..
T Consensus       186 ~~~~~~-~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~  264 (387)
T d1k3ia3         186 WLFGWK-KGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNA  264 (387)
T ss_dssp             CEEECG-GGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCE
T ss_pred             EEEEeC-CCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCccccee
Confidence            122234 6777777777777888777665432211  10    11111  12222 24567777776431        23


Q ss_pred             EEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEe-C-----------CeEEEEecCCceEeeecccCCC
Q 001295          919 CVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH-E-----------TQLAIFETTKLECVKQWVPRES  986 (1106)
Q Consensus       919 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~-d-----------~~v~i~d~~~~~~~~~~~~~~h  986 (1106)
                      .+.++..............  ..+....-.+.+..+||+.++++. +           ..+.+||..+.+-...-.. .+
T Consensus       265 ~~~~~~~~~~~~~~~~~~~--~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~-~~  341 (387)
T d1k3ia3         265 HIITLGEPGTSPNTVFASN--GLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPN-SI  341 (387)
T ss_dssp             EEEECCSTTSCCEEEECTT--CCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCC-SS
T ss_pred             ecccccccccCCCceeecc--ccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCC-CC
Confidence            3333332111111111111  111112234567778999888732 1           1478999887754322111 11


Q ss_pred             CCCee-EEEECCCCCEEEEEEc
Q 001295          987 SAPIT-HATFSCDSQLVYACFL 1007 (1106)
Q Consensus       987 ~~~v~-~l~~s~d~~~l~t~s~ 1007 (1106)
                      ...-. ...+.+||+.|+.|+.
T Consensus       342 ~R~~Hs~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         342 VRVYHSISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             CCCTTEEEEECTTSCEEEEECC
T ss_pred             cccceEEEEECCCCEEEEEeCC
Confidence            11112 2345789999998874

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.03  E-value=0.26  Score=54.70  Aligned_cols=80  Identities=10%  Similarity=0.060  Sum_probs=54.2

Q ss_pred             CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecCcccC-eeEEEEecCCC-
Q 001295          830 GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR-ITGLAFSHALN-  907 (1106)
Q Consensus       830 dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~s~d~~-  907 (1106)
                      .|.|.-+|+.+++.+-....+. ++..-.++. .+.++++|+.||.++-+|..+|+.+-+++-.... -.-+.|..||+ 
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~-p~~~g~lst-agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~q  542 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ  542 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-CCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CCeEEEEcCCCCcEEeecCCCC-CCccceeEE-cCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            3778889999988877665332 222212333 5667788999999999999999999877643221 12267788886 


Q ss_pred             EEEE
Q 001295          908 VLVS  911 (1106)
Q Consensus       908 ~l~s  911 (1106)
                      +++.
T Consensus       543 Yv~i  546 (582)
T d1flga_         543 YLGV  546 (582)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4443

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.98  E-value=0.097  Score=55.97  Aligned_cols=114  Identities=11%  Similarity=0.070  Sum_probs=69.8

Q ss_pred             CcEEEEEecCCCeEEEEEeccC----cEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEEccCCCEE
Q 001295          352 SPMSMDFHPVQQTLLLVGTNVG----DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF  427 (1106)
Q Consensus       352 ~v~~~~~sp~g~~llatg~~dg----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l  427 (1106)
                      .+..+++||||++++.+-+.+|    .|++.|+.+++.+.. .+                 .  ......++|++|++.|
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~-~i-----------------~--~~~~~~~~W~~D~~~~  185 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-VL-----------------E--RVKFSCMAWTHDGKGM  185 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-EE-----------------E--EECSCCEEECTTSSEE
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceeccc-cc-----------------c--cccccceEEcCCCCEE
Confidence            3456788999998666666555    599999999987642 11                 1  0112468999999988


Q ss_pred             EEEeCC----------------CeEEEEEccCCceeeeeeeecccc--CCeeEEEEcCCCCceEEEEec-CCCcEEEE
Q 001295          428 GVAYSR----------------HIVQIYSYHGGDEVRQHLEIDAHV--GGVNDIAFSHPNKQLCVITCG-DDKTIKVW  486 (1106)
Q Consensus       428 as~~~d----------------~~v~iwd~~~~~~~~~~~~l~~h~--~~V~~~~~s~d~~~~~l~s~~-~d~~i~iw  486 (1106)
                      .....+                ..|..|.+.+...-. ...+....  ..+..+..+++++.+++.+.. .+....+|
T Consensus       186 ~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d-~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~  262 (430)
T d1qfma1         186 FYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED-ILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLW  262 (430)
T ss_dssp             EEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC-EEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEE
T ss_pred             EEEEeccccCcccccccccCCcceEEEEECCCCcccc-ccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEE
Confidence            765432                257788887754321 11233333  346677889999963332332 33344444

>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.73  E-value=0.00034  Score=51.64  Aligned_cols=56  Identities=16%  Similarity=0.253  Sum_probs=45.6

Q ss_pred             hHHHHHHHHHHHhHhcHHHHHHHHHHhhCCCcc--HHHHHHHHhcCCHHHHHHHhccc
Q 001295            5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN--MKYFEDEVHNGNWDDVEKYLSGF   60 (1106)
Q Consensus         5 ~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~~~--~~~~~~~i~~g~w~~~~~~l~~~   60 (1106)
                      ++|+.+-|++||..+||.+++.+|++|..+.++  ...-..-+|+-.|..++.+=.++
T Consensus         7 ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~~~~~~~~ky~glLEKKWtSViRLQkKI   64 (76)
T d1uuja_           7 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKKV   64 (76)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCcHHHHHHHHHHHCCCCChhhhhhhcCcchhHHHHHHHHHHHH
Confidence            689999999999999999999999999998775  44444557778887777665544

>d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.0016  Score=57.12  Aligned_cols=81  Identities=15%  Similarity=0.278  Sum_probs=66.7

Q ss_pred             cccchhhhHHHHHHHHHHHhCCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccccccchhhccCCC-------chHH
Q 001295           67 RYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD-------TKSA  139 (1106)
Q Consensus        67 ~~~~~~~~~i~~q~~lEll~~~~~~~A~~~l~~~l~~l~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~-------~~~~  139 (1106)
                      ++.. ++|+++-+.||||+.+++.++|..++.+.-..+...+.+++++|+.+....++.+++....++.       .+.+
T Consensus        41 EL~~-lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~I~~L~~i~~~~~l~~n~~~~~~r~nKy~I~ms~~s  119 (149)
T d2nxpa1          41 ELSQ-LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDS  119 (149)
T ss_dssp             HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHH
T ss_pred             HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCHHHHhhhHHHHHHhCCCeEEEecHHH
Confidence            3455 9999999999999999999999999998877777779999999999999988888887666665       3455


Q ss_pred             HHHHHHHHH
Q 001295          140 RSIMLVELK  148 (1106)
Q Consensus       140 r~~l~~~l~  148 (1106)
                      -..|+..|+
T Consensus       120 ~~lLl~~L~  128 (149)
T d2nxpa1         120 YQLLKRHLQ  128 (149)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHH
Confidence            555555554

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.42  E-value=0.37  Score=51.20  Aligned_cols=246  Identities=14%  Similarity=0.112  Sum_probs=127.1

Q ss_pred             CCeeEEEEecCCCEEEEEe--CC----eEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCC-----------
Q 001295          811 EAVPCFALSKNDSYVMSAS--GG----KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD-----------  873 (1106)
Q Consensus       811 ~~v~~l~~s~~~~~l~~~s--dg----~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~d-----------  873 (1106)
                      -.+..+++|||+++++.+-  +|    .|+++|+.+++.+...- .......++|++ |++.|+....+           
T Consensus       125 ~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~-D~~~~~Y~~~~~~~~~~~~~~~  202 (430)
T d1qfma1         125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTH-DGKGMFYNAYPQQDGKSDGTET  202 (430)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECT-TSSEEEEEECCCCSSCCSSSCC
T ss_pred             ceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc-ccccccceEEcC-CCCEEEEEEeccccCccccccc
Confidence            3345678899999999664  33    49999999998764221 111235688999 66665543322           


Q ss_pred             -----CcEEEEEeecce--EEEEecC--cccCeeEEEEecCCCEEEEEc---CCCcEEEE--eCCCccccc---ceeecc
Q 001295          874 -----SSIQIYNVRVDE--VKSKLKG--HSKRITGLAFSHALNVLVSSG---ADSQLCVW--SSDGWEKQK---NRFLQI  936 (1106)
Q Consensus       874 -----g~v~iwd~~~~~--~~~~l~~--h~~~V~~l~~s~d~~~l~s~s---~Dg~i~vw--d~~~~~~~~---~~~~~~  936 (1106)
                           ..|+.+.+.+..  -...+..  ....+..+..+.|+++++...   .+....+|  ++.......   ......
T Consensus       203 ~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  282 (430)
T d1qfma1         203 STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKL  282 (430)
T ss_dssp             CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEE
T ss_pred             ccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEe
Confidence                 257777776542  1223333  233466778899999876432   23444555  433211100   000111


Q ss_pred             cCCCCCCCCCCceEEEcCCCcEEEEE----eCCeEEEEecCCceEe--eecccCCCCCCeeEEEECCCCCEEEEE-EcCC
Q 001295          937 PTGRTPTAQSDTRVQFHQDQIHFLVV----HETQLAIFETTKLECV--KQWVPRESSAPITHATFSCDSQLVYAC-FLDA 1009 (1106)
Q Consensus       937 ~~~~~~~~~~i~~~~~s~dg~~l~~~----~d~~v~i~d~~~~~~~--~~~~~~~h~~~v~~l~~s~d~~~l~t~-s~Dg 1009 (1106)
                      ....    ..........++.+++..    .++.|...++......  ..+. ..+...+..-.++..+.+|+.. ..|+
T Consensus       283 ~~~~----~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi-~~~~~~~~~~~~~~~~~~lvl~~~~~~  357 (430)
T d1qfma1         283 IDNF----EGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLV-PEHEKDVLEWVACVRSNFLVLCYLHDV  357 (430)
T ss_dssp             ECSS----SSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEE-CCCSSCEEEEEEEETTTEEEEEEEETT
T ss_pred             eccc----ccceEEEecCCceeecccCcccccceeEEecCCCCccccceEEe-cccCcceeeeEEEEECCEEEEEEEcCC
Confidence            1110    011222333334444433    2456777777654321  1222 1334445544444455566544 4564


Q ss_pred             --eEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEeC-C--CcEEEEeecCCC
Q 001295         1010 --TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS-D--GGVHVFEPLESE 1073 (1106)
Q Consensus      1010 --~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~t~~~-D--g~v~vW~~~~~~ 1073 (1106)
                        .|++++..+++......    .+.+    .+.  .+...+.+..+.++-++ -  .+++-+|+.+++
T Consensus       358 ~~~l~v~~~~~~~~~~~~~----~~~~----sv~--~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         358 KNTLQLHDLATGALLKIFP----LEVG----SVV--GYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             EEEEEEEETTTCCEEEEEC----CCSS----EEE--EEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EeEEEEEECCCCcEEEecC----CCCc----eEe--eccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence              48899999887754433    2222    122  33334433333333221 1  578888888876

>d2j4ba1 d.379.1.1 (A:18-148) TAF5 subunit of TFIID {Encephalitozoon cuniculi [TaxId: 6035]}

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Encephalitozoon cuniculi [TaxId: 6035]

Probab=95.67  E-value=0.0033  Score=53.70  Aligned_cols=81  Identities=14%  Similarity=0.216  Sum_probs=61.2

Q ss_pred             cccchhhhHHHHHHHHHHHhCCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccccccchhhccCCC-------chHH
Q 001295           67 RYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD-------TKSA  139 (1106)
Q Consensus        67 ~~~~~~~~~i~~q~~lEll~~~~~~~A~~~l~~~l~~l~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~-------~~~~  139 (1106)
                      ++.. ++|+++.+.||||+.+++.++|..++++.-..+. .+.+++++|+.+....++.+++....+++       .+.+
T Consensus        23 EL~~-lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~d~~-~~~~~i~~L~~i~~~~~l~~n~~~~~~r~nKy~i~ms~~s  100 (131)
T d2j4ba1          23 DLLP-LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHY-NKSEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYA  100 (131)
T ss_dssp             HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC---CHHHHHHHTTCCSHHHHHHCHHHHHHHHSCEEEEEEHHH
T ss_pred             HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHccchHH-HHHHHHHHHHccCCHHHHhhhHHHHHHhcCceEEEeCHHH
Confidence            3455 9999999999999999999999999997655553 37888999999888877777766554433       3555


Q ss_pred             HHHHHHHHHh
Q 001295          140 RSIMLVELKK  149 (1106)
Q Consensus       140 r~~l~~~l~~  149 (1106)
                      -..|+..|++
T Consensus       101 ~~lL~~fL~~  110 (131)
T d2j4ba1         101 FDLLINFLEE  110 (131)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            6666666654

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.28  E-value=0.96  Score=45.49  Aligned_cols=200  Identities=9%  Similarity=0.139  Sum_probs=113.6

Q ss_pred             cCCCEEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEec----C-CCceEEEee--CCC--cEEEEEeec-ceEEE
Q 001295          820 KNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHP----Q-DNNIIAIGM--DDS--SIQIYNVRV-DEVKS  888 (1106)
Q Consensus       820 ~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~----~-d~~~la~g~--~dg--~v~iwd~~~-~~~~~  888 (1106)
                      |...+++... .+-|.+||+. |+.+..+.  .+.+..|..-.    . +..-+++++  .++  +|.+|.+.. ...+.
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            3445555555 5569999996 67666654  34566555432    0 222345555  223  688888763 22333


Q ss_pred             EecCc-------ccCeeEEEE--ecC-CC-EEEEEcCCCcEEEEeCCCccc--ccceeecccCCCCCCCCCCceEEEcCC
Q 001295          889 KLKGH-------SKRITGLAF--SHA-LN-VLVSSGADSQLCVWSSDGWEK--QKNRFLQIPTGRTPTAQSDTRVQFHQD  955 (1106)
Q Consensus       889 ~l~~h-------~~~V~~l~~--s~d-~~-~l~s~s~Dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~s~d  955 (1106)
                      .+...       ...+..+|+  ++. |. +++....+|.+..|.+...+.  .....+..+..    ...+..|++.++
T Consensus       115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~----~~q~EGCVvDde  190 (353)
T d1h6la_         115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM----NSQTEGMAADDE  190 (353)
T ss_dssp             ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC----SSCEEEEEEETT
T ss_pred             cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC----CCccceEEEeCC
Confidence            33321       134778888  554 44 566777889999887743221  11122222221    136789999999


Q ss_pred             CcEEEEEe-CCeEEEEecCC-----ceEeeecccCCCCCCeeEEEEC--CCCC-EEEEE-EcCCeEEEEEcCC-ceeEEe
Q 001295          956 QIHFLVVH-ETQLAIFETTK-----LECVKQWVPRESSAPITHATFS--CDSQ-LVYAC-FLDATVCVFSAAN-LKLRCR 1024 (1106)
Q Consensus       956 g~~l~~~~-d~~v~i~d~~~-----~~~~~~~~~~~h~~~v~~l~~s--~d~~-~l~t~-s~Dg~i~vwd~~~-~~~~~~ 1024 (1106)
                      ...|.++. +..+..++++-     ...+...........+-.|++-  .++. ||++. -.|.+..|||..+ .+.+..
T Consensus       191 ~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~  270 (353)
T d1h6la_         191 YGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVAD  270 (353)
T ss_dssp             TTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred             CCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccce
Confidence            88888874 44565555431     2222222211235677777753  3333 55444 4678899999876 466666


Q ss_pred             eC
Q 001295         1025 IN 1026 (1106)
Q Consensus      1025 ~~ 1026 (1106)
                      +.
T Consensus       271 F~  272 (353)
T d1h6la_         271 FQ  272 (353)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.89  E-value=2.3  Score=42.78  Aligned_cols=191  Identities=12%  Similarity=0.088  Sum_probs=100.3

Q ss_pred             CcEEEEEecCCCeEEEEEec-----------cCcEEEEecCCcceeEEeeeeeeccCcCCccccccccCCCCcCeEEEEE
Q 001295          352 SPMSMDFHPVQQTLLLVGTN-----------VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW  420 (1106)
Q Consensus       352 ~v~~~~~sp~g~~llatg~~-----------dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~  420 (1106)
                      ....++..|||..++++|-.           .|.|.++|+.+.+.... .+.+-   ..  ......+..|  .+. +.-
T Consensus        36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~-~l~~~---~~--~~~~~~f~Ph--Gi~-l~~  106 (340)
T d1v04a_          36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVS-ELEII---GN--TLDISSFNPH--GIS-TFI  106 (340)
T ss_dssp             CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEE-ECEEE---CS--SSCGGGCCEE--EEE-EEE
T ss_pred             CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcce-EEEec---CC--CCCCcceecc--cee-EEE
Confidence            45578899999876666521           37888888876543321 11110   00  0000012223  221 222


Q ss_pred             ccCCC-EEEEE---eCCCeEEEEEccCCce-eeeeeeec-cccCCeeEEEEcCCCCceEEEEec--C-------------
Q 001295          421 SPDGS-LFGVA---YSRHIVQIYSYHGGDE-VRQHLEID-AHVGGVNDIAFSHPNKQLCVITCG--D-------------  479 (1106)
Q Consensus       421 spdg~-~las~---~~d~~v~iwd~~~~~~-~~~~~~l~-~h~~~V~~~~~s~d~~~~~l~s~~--~-------------  479 (1106)
                      .+||+ +|++.   ....+|-+|++..... +.-..++. ......+++++..++.  +++|-.  .             
T Consensus       107 ~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~--fy~Tnd~~~~~~~~~~~e~~~~  184 (340)
T d1v04a_         107 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH--FYATNDHYFIDPYLKSWEMHLG  184 (340)
T ss_dssp             CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE--EEEEESCSCCSHHHHHHHHHTT
T ss_pred             cCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCC--EEEecCccCcChhhhhhhHhhc
Confidence            45676 34444   2456799998864432 22222222 1234578999999998  677721  1             


Q ss_pred             CCcEEEEeCCCCceeEEEeccCCCeEEEeccccCCceEEEEEecCCeEEEEeCCCCCceeE--eeCCCCeeEEEEEec
Q 001295          480 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD--YEAPGRWCTTMAYSA  555 (1106)
Q Consensus       480 d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~  555 (1106)
                      -++..+|....++. ......-...+.|+++++.+ .++++-+..+.|+.|++........  ...-......+.+.+
T Consensus       185 ~~~g~v~~~~~~~~-~~~~~~l~~pNGI~~s~d~~-~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~  260 (340)
T d1v04a_         185 LAWSFVTYYSPNDV-RVVAEGFDFANGINISPDGK-YVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDP  260 (340)
T ss_dssp             CCCEEEEEECSSCE-EEEEEEESSEEEEEECTTSS-EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECT
T ss_pred             CCceeEEEEcCCce-EEEcCCCCccceeEECCCCC-EEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEec
Confidence            12344554444443 33323345678888865543 4556667789999999875443321  111233345555554

>d2j49a1 d.379.1.1 (A:149-282) TAF5 subunit of TFIID {Saccharomyces cerevisiae [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=94.71  E-value=0.004  Score=53.27  Aligned_cols=81  Identities=19%  Similarity=0.287  Sum_probs=62.7

Q ss_pred             cccchhhhHHHHHHHHHHHhCCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccccccchhhccCCC-------chHH
Q 001295           67 RYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD-------TKSA  139 (1106)
Q Consensus        67 ~~~~~~~~~i~~q~~lEll~~~~~~~A~~~l~~~l~~l~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~-------~~~~  139 (1106)
                      ++.. ++|+++.+.||||+.++. .+|..++.+.-..+...+.+++++|+.+....++.+++....+++       .+.+
T Consensus        25 EL~~-lLyPvFvh~yL~Lv~~~~-~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~~~r~nKy~I~ms~~s  102 (134)
T d2j49a1          25 ELSY-IMYPIFIYLFLNLVAKNP-VYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKTT  102 (134)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHHCH-HHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHHCHHHHHHHSSCEEEEECHHH
T ss_pred             HHHH-HHHHHHHHHHHHHHHcCH-HHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHhhHHHHHHHcCCeEEEEcHHH
Confidence            4555 999999999999999864 689999998777776668888999998888888877776555544       3566


Q ss_pred             HHHHHHHHHh
Q 001295          140 RSIMLVELKK  149 (1106)
Q Consensus       140 r~~l~~~l~~  149 (1106)
                      -..|+..|++
T Consensus       103 ~~lLl~fL~~  112 (134)
T d2j49a1         103 LNLLLYFLNE  112 (134)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            6666666664

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=94.01  E-value=1.6  Score=43.82  Aligned_cols=197  Identities=11%  Similarity=0.138  Sum_probs=110.1

Q ss_pred             CCceEEEeeCCCcEEEEEeecceEEEEecCcccCeeEEEEec----CC--CEEEEEc-C-C--CcEEEEeCCCcccccce
Q 001295          863 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH----AL--NVLVSSG-A-D--SQLCVWSSDGWEKQKNR  932 (1106)
Q Consensus       863 d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~----d~--~~l~s~s-~-D--g~i~vwd~~~~~~~~~~  932 (1106)
                      +..+++....++-|++||+. |+.+..+.  .++++.|..-.    ++  .-|+.++ . +  .+|.+|.+....... .
T Consensus        39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l-~  114 (353)
T d1h6la_          39 QNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL-Q  114 (353)
T ss_dssp             GGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEE-E
T ss_pred             CccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccc-c
Confidence            34466656666679999985 77777664  35666666432    22  2344444 2 2  358888876422111 0


Q ss_pred             eecccCC-CCCCCCCCceEEE--cCC-CcEEEE--EeCCeEEEEecC---Cc----eEeeecccCCCCCCeeEEEECCCC
Q 001295          933 FLQIPTG-RTPTAQSDTRVQF--HQD-QIHFLV--VHETQLAIFETT---KL----ECVKQWVPRESSAPITHATFSCDS  999 (1106)
Q Consensus       933 ~~~~~~~-~~~~~~~i~~~~~--s~d-g~~l~~--~~d~~v~i~d~~---~~----~~~~~~~~~~h~~~v~~l~~s~d~  999 (1106)
                      .+..... .......+..+|+  ++. |.+.+.  ..++.+..|.+.   .+    +.++.+..   ...+..+.+....
T Consensus       115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~---~~q~EGCVvDde~  191 (353)
T d1h6la_         115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM---NSQTEGMAADDEY  191 (353)
T ss_dssp             ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC---SSCEEEEEEETTT
T ss_pred             cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC---CCccceEEEeCCC
Confidence            1111100 0011134677777  664 544333  367888888662   22    45555553   4578999999999


Q ss_pred             CEEEEEEcCCeEEEEEcC-----CceeEEeeCCCcccCCCCCCCCccceEEEEeCC-CCCEEEEEeCCCcEEEEeecCC
Q 001295         1000 QLVYACFLDATVCVFSAA-----NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ-EPNEFALGLSDGGVHVFEPLES 1072 (1106)
Q Consensus      1000 ~~l~t~s~Dg~i~vwd~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-d~~~l~t~~~Dg~v~vW~~~~~ 1072 (1106)
                      ..|+.+-++.-|+.++++     .+..+....      .++-...+.-+++-..++ +|.+|++.-.|++..|+|..+.
T Consensus       192 ~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~------g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         192 GSLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD------GRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             TEEEEEETTTEEEEEESSTTSCSCCEEEEECS------SSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             CcEEEecCccceEEEEeccCCCccceeeeccc------CccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            999999887766555553     222222222      111122244344444432 3455666667889999998764

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.95  E-value=6.4  Score=41.11  Aligned_cols=102  Identities=18%  Similarity=0.199  Sum_probs=60.4

Q ss_pred             CCeeEEEEecCCCEEEEEe-CCeEEEEEcCCCceeee--ec------CCCCCeeEEEEecC---CCceEEEee------C
Q 001295          811 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMAT--FM------PPPPAATFLAFHPQ---DNNIIAIGM------D  872 (1106)
Q Consensus       811 ~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~--~~------~~~~~v~~l~~s~~---d~~~la~g~------~  872 (1106)
                      ...++|+|.||++++++-- .|.|++++..++.....  +.      .-......|+|+|+   ++.+.++.+      .
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~~  106 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCCc
Confidence            4578999999999999885 79999999877654322  11      11245778999983   133333221      0


Q ss_pred             C----Cc--EEEEEeecc-------e-EEEEe---cCcccCeeEEEEecCCCEEEEEcC
Q 001295          873 D----SS--IQIYNVRVD-------E-VKSKL---KGHSKRITGLAFSHALNVLVSSGA  914 (1106)
Q Consensus       873 d----g~--v~iwd~~~~-------~-~~~~l---~~h~~~V~~l~~s~d~~~l~s~s~  914 (1106)
                      +    ..  |..+.....       + .+..+   ..|.  ...|+|.|||.+.++.++
T Consensus       107 ~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~--gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQ--SGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCC--EEEEEECTTSCEEEEECC
T ss_pred             ccccccceEEEeeecccccccccceEEEeeccccccccc--ccceeEcCCCCEEEEecC
Confidence            1    11  333333221       1 11111   1244  368999999998887764

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=92.93  E-value=3.5  Score=41.25  Aligned_cols=191  Identities=13%  Similarity=0.053  Sum_probs=98.9

Q ss_pred             eeEEEEecCCCceEEEee------------CCCcEEEEEeecceEE-EEe--cCc-----ccCeeEEEE--ecCCC-EEE
Q 001295          854 ATFLAFHPQDNNIIAIGM------------DDSSIQIYNVRVDEVK-SKL--KGH-----SKRITGLAF--SHALN-VLV  910 (1106)
Q Consensus       854 v~~l~~s~~d~~~la~g~------------~dg~v~iwd~~~~~~~-~~l--~~h-----~~~V~~l~~--s~d~~-~l~  910 (1106)
                      .-.++..| ++..+++++            ..|.|.++|+.+.+.. ..+  .+.     .-.-..+.+  .+||. +|+
T Consensus        37 ~EDi~~~~-dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~  115 (340)
T d1v04a_          37 SEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  115 (340)
T ss_dssp             CCEEEECT-TSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             cceEEECC-CCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEE
Confidence            34566677 565554432            2488999998764321 111  111     111233333  34565 344


Q ss_pred             EE---cCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEEe----C------------CeEEEEe
Q 001295          911 SS---GADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH----E------------TQLAIFE  971 (1106)
Q Consensus       911 s~---s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~----d------------~~v~i~d  971 (1106)
                      +.   ....+|.+|++....... .........  .......+++..+|.++++-.    +            ....+|.
T Consensus       116 vvnH~~~~~~ieif~~~~~~~~l-~~~~~v~~~--~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~  192 (340)
T d1v04a_         116 VVNHPGSSSTVEVFKFQEEEKSL-LHLKTIRHK--LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY  192 (340)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEE-EEEEEECCT--TCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEE
T ss_pred             EEeccCCCceeEEEEEeCCCCeE-EEEeecCCc--cccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEE
Confidence            44   345678888876533211 111111111  113567899999999888721    1            1233444


Q ss_pred             cCCceEeeecccCCCCCCeeEEEECCCCCEEEEE-EcCCeEEEEEcCCceeEEeeCCCcccCCCCCCCCccceEEEEeCC
Q 001295          972 TTKLECVKQWVPRESSAPITHATFSCDSQLVYAC-FLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ 1050 (1106)
Q Consensus       972 ~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~-s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 1050 (1106)
                      ...++......   .-.....|+++||+++|+.+ +..+.|++|++.....+..... ..++.       .|-.+.+.+.
T Consensus       193 ~~~~~~~~~~~---~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~-~~l~~-------~pDNi~~d~~  261 (340)
T d1v04a_         193 YSPNDVRVVAE---GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRV-LSFDT-------LVDNISVDPV  261 (340)
T ss_dssp             ECSSCEEEEEE---EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEE-EECSS-------EEEEEEECTT
T ss_pred             EcCCceEEEcC---CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEE-ecCCC-------CCCccEEecC
Confidence            44333322211   13467899999999986554 4668899999864432222110 01221       1334666665


Q ss_pred             CCCEEEEEe
Q 001295         1051 EPNEFALGL 1059 (1106)
Q Consensus      1051 d~~~l~t~~ 1059 (1106)
                      ++.+.+++.
T Consensus       262 ~g~lwva~~  270 (340)
T d1v04a_         262 TGDLWVGCH  270 (340)
T ss_dssp             TCCEEEEEE
T ss_pred             CCEEEEEEC
Confidence            566655543

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.59  E-value=2.2  Score=41.54  Aligned_cols=219  Identities=11%  Similarity=0.038  Sum_probs=101.1

Q ss_pred             CeEEEEEcCCCceeee--ecCCCCCeeEEEEecCCCceEEEeeCC---------CcEEEEEeecceEEEEecCcccCeeE
Q 001295          831 GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDD---------SSIQIYNVRVDEVKSKLKGHSKRITG  899 (1106)
Q Consensus       831 g~i~vwd~~~~~~~~~--~~~~~~~v~~l~~s~~d~~~la~g~~d---------g~v~iwd~~~~~~~~~l~~h~~~V~~  899 (1106)
                      ..+.+||..+.+....  +......- +++. - ++++++.|+..         ..+.+||..+.+....-......-..
T Consensus        19 ~~~~~yd~~t~~W~~~~~~p~~R~~~-~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~   95 (288)
T d1zgka1          19 SYLEAYNPSNGTWLRLADLQVPRSGL-AGCV-V-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRI   95 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSC-EEEE-E-TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTC
T ss_pred             ceEEEEECCCCeEEECCCCCCcccee-EEEE-E-CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecce
Confidence            4588999887653322  32222222 2222 2 56777777632         36778887664432211111111111


Q ss_pred             EEEecCCCEEEEEcCCCc-----EEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE-Ee-----CCeEE
Q 001295          900 LAFSHALNVLVSSGADSQ-----LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VH-----ETQLA  968 (1106)
Q Consensus       900 l~~s~d~~~l~s~s~Dg~-----i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~-~~-----d~~v~  968 (1106)
                      .+...+++.++.++.++.     ...++..+..-..   .  . .... ...-...... +++.++. +.     ...+.
T Consensus        96 ~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~---~--~-~~~~-~r~~~~~~~~-~~~~~~~GG~~~~~~~~~~~  167 (288)
T d1zgka1          96 GVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHL---V--A-PMLT-RRIGVGVAVL-NRLLYAVGGFDGTNRLNSAE  167 (288)
T ss_dssp             EEEEETTEEEEECCEETTEECCCEEEEETTTTEEEE---C--C-CCSS-CCBSCEEEEE-TTEEEEECCBCSSCBCCCEE
T ss_pred             eccccceeeEEecceecccccceeeeeccccCcccc---c--c-cccc-ccccceeeee-eecceEecCcccccccceEE
Confidence            122236666666655443     3445655532111   1  1 0000 0011222222 3444444 22     24578


Q ss_pred             EEecCCceEeeecccCCCCCCeeEEEECCCCCEEEEEEcC-----CeEEEEEcCCceeEEeeCCCcccCCCCCCCCccce
Q 001295          969 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPL 1043 (1106)
Q Consensus       969 i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~t~s~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1043 (1106)
                      .||..+.+....-.. .....-.+.+. .++..++.|+.+     .....+|..+.+....-.    .+...    .. .
T Consensus       168 ~~d~~~~~~~~~~~~-~~~~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~----~p~~r----~~-~  236 (288)
T d1zgka1         168 CYYPERNEWRMITAM-NTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP----MKHRR----SA-L  236 (288)
T ss_dssp             EEETTTTEEEECCCC-SSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCC----CSSCC----BS-C
T ss_pred             Eeecccccccccccc-ccccccccccc-eeeeEEEecCccccccccceeeeeecceeeecccC----ccCcc----cc-e
Confidence            888877654432211 11111122222 245566666544     346778887766543221    11110    11 1


Q ss_pred             EEEEeCCCCCEEEEEeCCCc-----EEEEeecCCC
Q 001295         1044 VIAAHPQEPNEFALGLSDGG-----VHVFEPLESE 1073 (1106)
Q Consensus      1044 ~~~~~~~d~~~l~t~~~Dg~-----v~vW~~~~~~ 1073 (1106)
                      +++..  ++++++.|+.++.     |.+||+.+.+
T Consensus       237 ~~~~~--~~~l~v~GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         237 GITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             EEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             EEEEE--CCEEEEEecCCCCeecceEEEEECCCCE
Confidence            33333  4788888876664     6788888755

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.41  E-value=2.4  Score=43.01  Aligned_cols=187  Identities=10%  Similarity=0.017  Sum_probs=103.6

Q ss_pred             cceEEEEEcCCCceEEEeecCceEEEeeccccccCCCCccccccCccccCCCCCCccccccCCCCCCCCeeEEEEecCCC
Q 001295          744 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS  823 (1106)
Q Consensus       744 ~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~  823 (1106)
                      ....-+++++...++++++.++ +.|-.+..-...            +-....+.......    .-..|..++|+.|  
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~------------~~~~~~~~~~~~~~----~ip~v~~vafs~d--   97 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDH------------ITSDSTPLTFKWEK----EIPDVIFVCFHGD--   97 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHH------------HHSSSCCCCCSEEE----ECTTEEEEEEETT--
T ss_pred             cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHH------------hhccCCCCcceecc----CCCCeEEEEeeCC--
Confidence            3456688888877777777775 455543321000            00000000000000    1225888999755  


Q ss_pred             EEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEEEecC-----cccCee
Q 001295          824 YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG-----HSKRIT  898 (1106)
Q Consensus       824 ~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~-----h~~~V~  898 (1106)
                      .+++..++.+..++..+.............+..+.++|   ..++....+|.+.++++..++......+     -.+.+.
T Consensus        98 ~l~v~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p---~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~  174 (381)
T d1xipa_          98 QVLVSTRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN---NTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQL  174 (381)
T ss_dssp             EEEEEESSEEEEEESSSTTCEEEEEECSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEE
T ss_pred             EEEEEeCCCEEEEEeeccccccccccccccccceecCC---ceeEEEecCCCEEEEEeccCccccccCCcceEEecCCce
Confidence            57777778888888876554444443455678888777   3556667789999999987754322211     235578


Q ss_pred             EEEEecCCCEEEEEcCCCcEEEE-eCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE
Q 001295          899 GLAFSHALNVLVSSGADSQLCVW-SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV  961 (1106)
Q Consensus       899 ~l~~s~d~~~l~s~s~Dg~i~vw-d~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~  961 (1106)
                      +++|++.|+.++++..++ ..+- ++....     .+.   ........+.++.|-.+..++++
T Consensus       175 ~v~ws~kgkq~v~~~g~~-~q~k~~i~~~~-----~~~---~p~~~~~~v~sI~WL~~~~F~vv  229 (381)
T d1xipa_         175 AVLLKDRSFQSFAWRNGE-MEKQFEFSLPS-----ELE---ELPVEEYSPLSVTILSPQDFLAV  229 (381)
T ss_dssp             EEEETTSCEEEEEEETTE-EEEEEEECCCH-----HHH---TSCTTTSEEEEEEESSSSEEEEE
T ss_pred             EEEEeCCcEEEEEeCCCc-eeeccCCCCcc-----ccC---CCcCCCcceeEEEEecCceEEEE
Confidence            888888888887764332 2211 111100     011   11111134677888877777765

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.39  E-value=5.3  Score=40.32  Aligned_cols=183  Identities=12%  Similarity=0.099  Sum_probs=104.5

Q ss_pred             CCeeEEEEecCCCEEEEEeCCeEEEEEcCCC---------ceeeeecCCCCCeeEEEEecCCCceEEEeeCCCcEEEEEe
Q 001295          811 EAVPCFALSKNDSYVMSASGGKISLFNMMTF---------KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV  881 (1106)
Q Consensus       811 ~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~---------~~~~~~~~~~~~v~~l~~s~~d~~~la~g~~dg~v~iwd~  881 (1106)
                      ....-+++++...++++|+...+.|..+..-         .........-..|..++|+. +  .|++. .++.+..++.
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~-d--~l~v~-~~~~l~~~~~  112 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHG-D--QVLVS-TRNALYSLDL  112 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEET-T--EEEEE-ESSEEEEEES
T ss_pred             cccceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeC-C--EEEEE-eCCCEEEEEe
Confidence            4456788988888888888667888775321         00011111123589999986 4  34444 4566888887


Q ss_pred             ecceEEEEecCcccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEE
Q 001295          882 RVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV  961 (1106)
Q Consensus       882 ~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~  961 (1106)
                      .+-........-..++..+.+.|.  .++....++.+.++++..++.....  .-.. .......+.+++|++.|+.+++
T Consensus       113 ~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~--~~v~-~~~~~~~~~~v~ws~kgkq~v~  187 (381)
T d1xipa_         113 EELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLA--QNVT-SFDVTNSQLAVLLKDRSFQSFA  187 (381)
T ss_dssp             SSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEE--ESEE-EEEECSSEEEEEETTSCEEEEE
T ss_pred             eccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCcccccc--CCcc-eEEecCCceEEEEeCCcEEEEE
Confidence            664333333333456777777764  5666777888999999886532210  0000 0001135678888888888887


Q ss_pred             EeCCeEEEE-ecCCceEeeeccc-CCCCCCeeEEEECCCCCEEEEE
Q 001295          962 VHETQLAIF-ETTKLECVKQWVP-RESSAPITHATFSCDSQLVYAC 1005 (1106)
Q Consensus       962 ~~d~~v~i~-d~~~~~~~~~~~~-~~h~~~v~~l~~s~d~~~l~t~ 1005 (1106)
                      +..+...+. ++....   .+.. ......|.+|.|-.+..++++-
T Consensus       188 ~~g~~~q~k~~i~~~~---~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         188 WRNGEMEKQFEFSLPS---ELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EETTEEEEEEEECCCH---HHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             eCCCceeeccCCCCcc---ccCCCcCCCcceeEEEEecCceEEEEE
Confidence            644433321 111111   1110 1224578899998777776644

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=85.46  E-value=12  Score=33.30  Aligned_cols=168  Identities=14%  Similarity=0.109  Sum_probs=99.5

Q ss_pred             EEEEEcCCCceeeeecCCC-CCeeEEEEecCCCceEEEeeCCCcEEEEEeecceEEE--EecCc-------ccCeeEEEE
Q 001295          833 ISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS--KLKGH-------SKRITGLAF  902 (1106)
Q Consensus       833 i~vwd~~~~~~~~~~~~~~-~~v~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~--~l~~h-------~~~V~~l~~  902 (1106)
                      |.+-++.....-..+.... -.|.++++.  |.+.+.+|+....+.+|-++.|++..  .+.+.       .+-|..+.+
T Consensus        84 i~~~Nlk~~GEE~~i~spk~vRI~S~~yd--dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~  161 (313)
T d2hu7a1          84 LFKVNTSRPGEEQRLEAVKPMRILSGVDT--GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGF  161 (313)
T ss_dssp             EEEEETTSTTCEEECTTSCSBEEEEEEEC--SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEE
T ss_pred             EEEEccCCCCeeeEecCCceEEEEEeeec--CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEee
Confidence            5555555222223333222 345566653  77899999999999999999887543  22221       233444444


Q ss_pred             e-cCCCEEEEEcC-CCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCcEEEEE----eCCeEEEEecCCce
Q 001295          903 S-HALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV----HETQLAIFETTKLE  976 (1106)
Q Consensus       903 s-~d~~~l~s~s~-Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~----~d~~v~i~d~~~~~  976 (1106)
                      - +..+-++++.- .|.++|++-..+                   .+...-++++.+. ++.    .+....-+|.+.++
T Consensus       162 ~~g~~~sfF~adl~SG~lri~tpkeG-------------------S~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~  221 (313)
T d2hu7a1         162 FGGGRVSLFTSNLSSGGLRVFDSGEG-------------------SFSSASISPGMKV-TAGLETAREARLVTVDPRDGS  221 (313)
T ss_dssp             EETTEEEEEEEETTTEEEEEECCSSE-------------------EEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCC
T ss_pred             ecCCcceEEEEecccCCEEEecCCCC-------------------cccceeEccCcee-eeccCCCCceEEEEEecccCc
Confidence            2 23233444544 666777665542                   4455666777776 332    23333356888766


Q ss_pred             EeeecccCC-----CCCCeeEEEECCCCCEEEEEEcCCeEEEEEcCCceeEEe
Q 001295          977 CVKQWVPRE-----SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCR 1024 (1106)
Q Consensus       977 ~~~~~~~~~-----h~~~v~~l~~s~d~~~l~t~s~Dg~i~vwd~~~~~~~~~ 1024 (1106)
                      ..+.-.+..     ..-.|+-+-+.||+++++.+-.||.=++|.  +|+.+..
T Consensus       222 yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~--nGk~in~  272 (313)
T d2hu7a1         222 VEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI--DGERVEA  272 (313)
T ss_dssp             EEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE--TTEEECC
T ss_pred             eeeeecCcccceeecceEEEeeeeCCCCcEEEEEecCCchheee--cceEecC
Confidence            544322110     134566677999999989999999999998  6777643

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.23  E-value=8.6  Score=36.94  Aligned_cols=186  Identities=13%  Similarity=0.056  Sum_probs=85.5

Q ss_pred             CCCEEEEEe-C---------CeEEEEEcCCCceeee--ecCCCCCeeEEEEecCCCceEEEeeCCCcE-----EEEEeec
Q 001295          821 NDSYVMSAS-G---------GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDSSI-----QIYNVRV  883 (1106)
Q Consensus       821 ~~~~l~~~s-d---------g~i~vwd~~~~~~~~~--~~~~~~~v~~l~~s~~d~~~la~g~~dg~v-----~iwd~~~  883 (1106)
                      +++.++.|+ .         ..+.+||..+.+....  +......-.++.  . ++++++.|+.++..     ..++..+
T Consensus        50 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~~~~--~-~~~i~~~gg~~~~~~~~~~~~~~~~~  126 (288)
T d1zgka1          50 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGV--I-DGHIYAVGGSHGCIHHNSVERYEPER  126 (288)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEE--E-TTEEEEECCEETTEECCCEEEEETTT
T ss_pred             CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecceeccc--c-ceeeEEecceecccccceeeeecccc
Confidence            566666553 1         3477888776544322  111111122222  2 56777777655543     3455555


Q ss_pred             ceEEEEecCcccCe-eEEEEecCCCEEEEEcCC-----CcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCCCc
Q 001295          884 DEVKSKLKGHSKRI-TGLAFSHALNVLVSSGAD-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI  957 (1106)
Q Consensus       884 ~~~~~~l~~h~~~V-~~l~~s~d~~~l~s~s~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~  957 (1106)
                      ..-...-....... .++.. .++..++.|+.+     ..+..||..+.+....   .....  .  ..-... ...+++
T Consensus       127 ~~~~~~~~~~~~r~~~~~~~-~~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~---~~~~~--~--~~~~~~-~~~~~~  197 (288)
T d1zgka1         127 DEWHLVAPMLTRRIGVGVAV-LNRLLYAVGGFDGTNRLNSAECYYPERNEWRMI---TAMNT--I--RSGAGV-CVLHNC  197 (288)
T ss_dssp             TEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEC---CCCSS--C--CBSCEE-EEETTE
T ss_pred             Cccccccccccccccceeee-eeecceEecCcccccccceEEEeeccccccccc---ccccc--c--cccccc-cceeee
Confidence            43221111111111 11222 244556666553     3467787766432111   11100  0  111222 223444


Q ss_pred             EEEE-EeC-----CeEEEEecCCceEeeecccCCCCCCe-eEEEECCCCCEEEEEEcCC-----eEEEEEcCCcee
Q 001295          958 HFLV-VHE-----TQLAIFETTKLECVKQWVPRESSAPI-THATFSCDSQLVYACFLDA-----TVCVFSAANLKL 1021 (1106)
Q Consensus       958 ~l~~-~~d-----~~v~i~d~~~~~~~~~~~~~~h~~~v-~~l~~s~d~~~l~t~s~Dg-----~i~vwd~~~~~~ 1021 (1106)
                      .++. +.+     .....||..+.+....-.. . .... .+++ ..++++++.|+.++     .|.+||+.+.+-
T Consensus       198 i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~-p-~~r~~~~~~-~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W  270 (288)
T d1zgka1         198 IYAAGGYDGQDQLNSVERYDVETETWTFVAPM-K-HRRSALGIT-VHQGRIYVLGGYDGHTFLDSVECYDPDTDTW  270 (288)
T ss_dssp             EEEECCBCSSSBCCCEEEEETTTTEEEECCCC-S-SCCBSCEEE-EETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred             EEEecCccccccccceeeeeecceeeecccCc-c-CcccceEEE-EECCEEEEEecCCCCeecceEEEEECCCCEE
Confidence            4444 322     3567888877665443211 1 1122 1222 23678888877654     388999988653

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=82.61  E-value=8.9  Score=39.94  Aligned_cols=62  Identities=8%  Similarity=0.044  Sum_probs=39.6

Q ss_pred             ccCeeEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeecccCCCCCCCCCCceEEEcCC
Q 001295          894 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD  955 (1106)
Q Consensus       894 ~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~d  955 (1106)
                      -..-++|+|.|||++|++--.+|.|++++..+++.....-+...............++|+|+
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            34568999999999998876679999998877654321111111111111235678999985