Citrus Sinensis ID: 001297

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100-----
MASSSRARSSSPFSYRKPVTPYSSTSSTSSSFMNNRLMPRSCSTSASSYFNSGNGLGSRSMTPSRSCSDSMYNSPRAPPVIFPSEELMAEPLDAPQRSGDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDAQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLVRWFFLSVKTAYLFQLYESSKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQREISSLKEELDQLKRGILVGVSHEELMTLRQKLEEGQVKMQSRLEEEEEAKAALMSRIQRLTKLILVSTKNTIPGLSDVPNHQRSHSVGEDDGSLLLDGENQKDSTSSASGLASDLPSDFKHRRSSSKWNEEFSPTSSTVTESTQAGELISGSKHPIGGMTSDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQTVNGVNRKYSDGMKAGRKGRLSGRSTEISGVVSDDFDSWNLDPDDLKLELQARKQREAALEAALAEKEFLEDEYRKKVEESKRREEALENDLANMWVLVAKLKKEVGSVPELNTVERHSNGEDRVCDPKANETDCNTVLKDRHFLEVSKPADENSVERQVLDVPKPADETPKEEPLVARLKARMQEMKEKEQKYQGNGDPNSHMCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISDRLFAFT
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccHHHHHccccEEEEEcccEEEEcccccccccccccccccccccHHHHHHHcHHHHHHHHccccEEEEEcccccccccccccccccccccHHHHHHHHHHHHHcccccEEEEEEHHHHHHHccccccccccccccEEEEcccccEEccccEEEcccHHHHHHHHHHHHHcccHHHccccccccccccEEEEEEEEEcccccccccccccccccccEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHcccccccccEEEEEEcccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHcccccccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHccccccHHcccccccccccccccccccccccccccccccccccc
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccHHHHHccccEEEEEcccEEEEccccccEEEEccEEEcccccHHHHHHHHcHHHHHHHHcccEEEEEEEccccccHHHHHcEcccccccEHHHHHHHHHHHcccccEEEEEEEEEEEEEccEEEEccccccccEcEEEcccccEEcccccEEEccHHHHHHHHHHHHHHHHcccccHHHHHHHcEEEEEEEEEEEEcccccccccccccccccEEEEEEEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHcccccccHHHcHHHHHcHHHHHccEEEEEEEEEccEHHHHHHHHHHHHHHHHHHccEEEEccEEEccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccEHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHcHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccHHHHHHHHHHHHHHHHcHHHHcHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHcHHHHHHHHHHHHHHHHHEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHcccccccEccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHcccccccccccccEEcccccHcHHccccccccEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEccccHEEEcccccEEccccccEEcccccccccccccEEEEcc
masssrarssspfsyrkpvtpysstsstsssfmnnrlmprscstsassyfnsgnglgsrsmtpsrscsdsmynsprappvifpseelmaepldapqrsgdsisvtirfrplserefqrgdeiawyadgdkivrneynpatayafdrvfgphansqevydVAARPVVKAAMEGVNGTVFAYGvtssgkthtmhgdqnspgiiplAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINdlldptgqnlrvredaqgtyveGIKEevvlspghalsfiaageehrhvgsnnfnllssrSHTIFTLMIessdhgdeydgvIFSQLVRWFFLSVKTAYLFQLYEssktettglrrkegsyINKSLLTLGTVIgklsegkashvpyrdskLTRLLQsslsghghvSLICtvtpasssmeeTHNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQREISSLKEELDQLKRGILVGVSHEELMTLRQKLEEGQVKMQSRLEEEEEAKAALMSRIQRLTKLILVStkntipglsdvpnhqrshsvgeddgsllldgenqkdstssasglasdlpsdfkhrrssskwneefsptsstvtestqagelisgskhpiggmtsDQMDLLVEQVKMLAGEIafsssnlkrlvdqsvndpdgskvQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACqngdksagssgqgtsDEYVDELRKKVQSQETENEKLKLEHVQLseensglhvqnQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQTVNGVnrkysdgmkagrkgrlsgrsteisgvvsddfdswnldpddLKLELQARKQREAALEAALAEKEFLEDEYRKKVEESKRREEALENDLANMWVLVAKLKKevgsvpelntverhsngedrvcdpkanetdcntvlkdrhflevskpadensverqvldvpkpadetpkeePLVARLKARMQEMKEKEQkyqgngdpnshmckvcfesptaaillpcrhfclckscslacsecpicrtkISDRLFAFT
masssrarssspfsyrkpvtpysstsstsssfMNNRLMPRSCSTSASSYFNSGNGLGSRSMTPSRSCSDSMYNSPRAPPVIFPSEELMAEPldapqrsgdsisvtirfrplserefqrgdeiawyadgdkiVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINdlldptgqnLRVREDAQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLVRWFFLSVKTAYLFQLyessktettglrrkegsyinKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNtlkfasrakrveiyasrnkiidekslIKKYQREISSLKEELDQLKRGILVGVSHEELMTLRQKLEEGQVKMQSRLEEEEEAKAALMSRIQRLTKLILVSTKntipglsdvpnhqrshsVGEDDGSLLLDGENQKDStssasglasdlpsdfKHRRssskwneefsptsstvtestqageLISGSKHPIGGMTSDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQsvndpdgskvqiqnLEREIQEKRRQMRILEQRIIengeasmanASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACqngdksagssgqgTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHsrgaamqtvngvnrkysdgmkagrkgrlsgrsteisgvvsddfdswnlDPDDLKLELQARKQREAALEAALaekefledeyrkKVEESKRREEALENDLANMWVLVAKLKKevgsvpelntverhsngedrvcdpkanETDCNTVLKDRHFLevskpadensverqvldvpkpadetpkeeplVARLKARMQEMKEKEqkyqgngdpnSHMCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISDRLFAFT
MasssrarsssPFSYRKPVTPYsstsstsssFMNNRLMPRSCSTSASSYFNSGNGLGSRSMTPSRSCSDSMYNSPRAPPVIFPSEELMAEPLDAPQRSGDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDAQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLVRWFFLSVKTAYLFQLYESSKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQREISSLKEELDQLKRGILVGVSHEELMTLRQKLEEGQVKMQSRLeeeeeAKAALMSRIQRLTKLILVSTKNTIPGLSDVPNHQRSHSVGEDDGSLLLDGENQKDSTSSASGLASDLPSDFKHRRSSSKWNEEFSPTSSTVTESTQAGELISGSKHPIGGMTSDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQklaeeasyakelasaaavelkNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQTVNGVNRKYSDGMKAGRKGRLSGRSTEISGVVSDDFDSWNLDPDDLKLELqarkqreaaleaalaekeFLEDeyrkkveeskrreeALENDLANMWVLVAKLKKEVGSVPELNTVERHSNGEDRVCDPKANETDCNTVLKDRHFLEVSKPADENSVERQVLDVPKPADETPKEEPLVARLKARMQEMKEKEQKYQGNGDPNSHMCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISDRLFAFT
*******************************************************************************************************VTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSS************PGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDAQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLVRWFFLSVKTAYLFQLYESSKT*TTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRD*KLTRLLQSSLSGHGHVSLICTVT**************FASRAKRVEIYASRNKIIDEKSLIKKYQREISSL**ELDQLKRGILVGVSHE********************************RIQRLTKLILVSTKN***********************************************************************************************LLVEQVKMLAGEIAF****************************************************************************************************************************************************************************************************************************************************************************************************************************DLANMWVLVAKLKKEVG******************************VL****************************************************************MCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISDRLFA**
*******************************************************************************************************VTIRFRPLSEREFQRGDEIAWYADGDKIV***YNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDAQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIE****************VRWFFLSVKTAYLFQLYES**********KEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQREISSLK**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************DLANMW***************************************************************************************************************CFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISDRLFAFT
*******************************FMNNRLMPRSCSTSASSYFNSGN*******************SPRAPPVIFPSEELMAEPLDAPQRSGDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDAQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLVRWFFLSVKTAYLFQLYESSKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPA********NTLKFASRAKRVEIYASRNKIIDEKSLIKKYQREISSLKEELDQLKRGILVGVSHEELMTLRQKLEEGQV**************ALMSRIQRLTKLILVSTKNTIPGLSDVPNHQRSHSVGEDDGSLLLDGE**********************************************GELISGSKHPIGGMTSDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLAC***********************************LKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQTVNGVNRKYSDGMKAGRKGRLSGRSTEISGVVSDDFDSWNLDPDDLKLELQARKQREAALEAALAEKEFLEDEYR***********ALENDLANMWVLVAKLKKEVGSVPELNTVERHSNGEDRVCDPKANETDCNTVLKDRHFLEVSKPADENSVERQVLDVPKPADETPKEEPLVARLKARMQ**************PNSHMCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISDRLFAFT
***************************************************************************************************DSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDAQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHG*************WFFLSVKTAYLFQLYE********LRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQREISSLKEELDQLKRGILVGVSHEELMTLRQKLEEGQVKMQSRLEEEEEAKAALMSRIQRLTKLILVSTK****************************************************************************************GMTSDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQN*************DEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAAR********************************************DDFDSWNLDPDDLKLELQARKQREAALEAALAEKEFLEDEYRKKVEESKRREEALENDLANMWVLVAKLKKE*************************************HFLEVSKPADENSVERQVLDVPKPADETPKEEPLVARLKARMQEMKEKEQKYQGNGDPNSHMCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISDRLFAFT
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooo
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MASSSRARSSSPFSYRKPVTPYSSTSSTSSSFMNNRLMPRSCSTSASSYFNSGNGLGSRSMTPSRSCSDSMYNSPRAPPVIFPSEELMAEPLDAPQRSGDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDAQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLVRWFFLSVKTAYLFQLYESSKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVEIYASRNKxxxxxxxxxxxxxxxxxxxxxxxxxxxxILVGVSHEELMTLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxILVSTKNTIPGLSDVPNHQRSHSVGEDDGSLLLDGENQKDSTSSASGLASDLPSDFKHRRSSSKWNEEFSPTSSTVTESTQAGELISGSKHPIGGMTSDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQxxxxxxxxxxxxxxxxxxxxxIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKSAGSSGQGTSDEYxxxxxxxxxxxxxxxxxxxxxxxxxxxxNSGLHVQNQKLAEEASYAKELASAAAVExxxxxxxxxxxxxxxxxxxxxxxxxxxxMHSRGAAMQTVNGVNRKYSDGMKAGRKGRLSGRSTEISGVVSDDFDSWNLDPDDLKLELQAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLANMWVLVAKLKKEVGSVPELNTVERHSNGEDRVCDPKANETDCNTVLKDRHFLEVSKPADENSVERQVLDVPKPADETPKEEPLxxxxxxxxxxxxxxxxxxxxxGDPNSHMCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISDRLFAFT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1105 2.2.26 [Sep-21-2011]
Q6S001685 Kinesin-related protein 1 yes no 0.334 0.540 0.497 1e-95
Q54NP8 1922 Kinesin-related protein 4 no no 0.311 0.178 0.449 3e-84
Q6RT24 2474 Centromere-associated pro yes no 0.310 0.138 0.422 4e-78
Q02224 2701 Centromere-associated pro yes no 0.353 0.144 0.385 2e-74
Q4R628702 Kinesin-like protein KIF3 N/A no 0.318 0.501 0.401 1e-62
Q5R4H3702 Kinesin-like protein KIF3 yes no 0.318 0.501 0.401 1e-62
Q9Y496699 Kinesin-like protein KIF3 no no 0.316 0.500 0.404 1e-62
P28741701 Kinesin-like protein KIF3 no no 0.318 0.502 0.398 2e-62
P46872699 Kinesin-II 85 kDa subunit no no 0.319 0.505 0.397 2e-61
O60282957 Kinesin heavy chain isofo no no 0.294 0.339 0.415 4e-61
>sp|Q6S001|KIF11_DICDI Kinesin-related protein 11 OS=Dictyostelium discoideum GN=kif11 PE=3 SV=1 Back     alignment and function desciption
 Score =  352 bits (903), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 192/386 (49%), Positives = 266/386 (68%), Gaps = 16/386 (4%)

Query: 139 ATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGD-QNS 197
           + +Y +D +F P  ++ EVYD  AR +VK+AMEG N ++ AYG+TSSGKT TM G  + +
Sbjct: 114 SNSYTYDHLFPPTCDNYEVYDTVARELVKSAMEGYNASIMAYGITSSGKTFTMTGSGKKN 173

Query: 198 PGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTGQN--LRVRED-AQGT 254
           PGIIPL+I+D+F+ IQ+   REFLLRVSYLEIYNE +NDLL    +N  L++ E    G 
Sbjct: 174 PGIIPLSIQDIFTYIQECKEREFLLRVSYLEIYNETVNDLLGVNQENFNLKIHEHPVTGV 233

Query: 255 YVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDG 314
           YV G+KEE+VLS  H LS I+AGE HRHVGS ++NL SSRSHTIF ++IES +   E  G
Sbjct: 234 YVAGLKEEIVLSVEHVLSLISAGEAHRHVGSTSYNLQSSRSHTIFKMIIESKEVLPEGSG 293

Query: 315 VI-FSQLVRWFFLSVKTAYLFQLY---ESSKTETTGLRRKEGSYINKSLLTLGTVIGKLS 370
                  VR+      T  L  L    ++S++  + +R KEGSYINKSLLTLGTVI KLS
Sbjct: 294 SGGLESPVRY-----STLNLIDLAGSEKASESTISAIRNKEGSYINKSLLTLGTVISKLS 348

Query: 371 EGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVEIY 430
           E    ++PYRDSKLTR+LQ+SLSG+  V++ICT+T AS++ EE+HNTLKFASRAK++   
Sbjct: 349 EKDTGYIPYRDSKLTRVLQNSLSGNSRVAIICTITLASNNFEESHNTLKFASRAKKISNN 408

Query: 431 ASRNKIIDEKSLIKKYQREISSLKEELDQLKRGILVGVSHEELMTLRQKLEEGQVKMQSR 490
           A  N+I+D+K+L+K+Y+ EI+ LK +L      +      +E +T ++K++    ++  +
Sbjct: 409 AKVNEILDDKALLKQYRNEIAELKSKLSD---ALSTEKELQETLTEKEKMKITNQELLHK 465

Query: 491 LEEEEEAKAALMSRIQRLTKLILVST 516
           L + E+ ++ L S+I  L KLILVST
Sbjct: 466 LVDAEKHRSLLESKINNLNKLILVST 491
Microtubule-associated force-producing protein that plays a role in organelle transport. Its motor activity is directed toward the microtubule's plus end.
Dictyostelium discoideum (taxid: 44689)
>sp|Q54NP8|KIF4_DICDI Kinesin-related protein 4 OS=Dictyostelium discoideum GN=kif4 PE=2 SV=1 Back     alignment and function description
>sp|Q6RT24|CENPE_MOUSE Centromere-associated protein E OS=Mus musculus GN=Cenpe PE=1 SV=1 Back     alignment and function description
>sp|Q02224|CENPE_HUMAN Centromere-associated protein E OS=Homo sapiens GN=CENPE PE=1 SV=2 Back     alignment and function description
>sp|Q4R628|KIF3A_MACFA Kinesin-like protein KIF3A OS=Macaca fascicularis GN=KIF3A PE=2 SV=1 Back     alignment and function description
>sp|Q5R4H3|KIF3A_PONAB Kinesin-like protein KIF3A OS=Pongo abelii GN=KIF3A PE=2 SV=1 Back     alignment and function description
>sp|Q9Y496|KIF3A_HUMAN Kinesin-like protein KIF3A OS=Homo sapiens GN=KIF3A PE=1 SV=4 Back     alignment and function description
>sp|P28741|KIF3A_MOUSE Kinesin-like protein KIF3A OS=Mus musculus GN=Kif3a PE=1 SV=2 Back     alignment and function description
>sp|P46872|KRP85_STRPU Kinesin-II 85 kDa subunit OS=Strongylocentrotus purpuratus GN=KRP85 PE=1 SV=1 Back     alignment and function description
>sp|O60282|KIF5C_HUMAN Kinesin heavy chain isoform 5C OS=Homo sapiens GN=KIF5C PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1105
2240804181067 predicted protein [Populus trichocarpa] 0.941 0.974 0.787 0.0
2254277281079 PREDICTED: uncharacterized protein LOC10 0.947 0.970 0.782 0.0
1478644021082 hypothetical protein VITISV_007231 [Viti 0.947 0.967 0.776 0.0
2241033431000 predicted protein [Populus trichocarpa] 0.887 0.981 0.809 0.0
2977447521046 unnamed protein product [Vitis vinifera] 0.916 0.968 0.769 0.0
3574734571107 Kinesin heavy chain-like protein [Medica 0.959 0.957 0.720 0.0
2555438191032 kinesin heavy chain, putative [Ricinus c 0.897 0.961 0.769 0.0
3565387241086 PREDICTED: uncharacterized protein LOC10 0.957 0.974 0.733 0.0
4494648541130 PREDICTED: chromosome-associated kinesin 0.961 0.939 0.725 0.0
2977978901055 hypothetical protein ARALYDRAFT_327857 [ 0.917 0.961 0.737 0.0
>gi|224080418|ref|XP_002306132.1| predicted protein [Populus trichocarpa] gi|222849096|gb|EEE86643.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1691 bits (4378), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 874/1110 (78%), Positives = 950/1110 (85%), Gaps = 70/1110 (6%)

Query: 12   PFSYRKPVTPYSSTSSTSSSFMNNRLMPRSCSTSASSYFNSGNGLGSRSMTPSRSCSDSM 71
            PFSYRKP +    +S++S++  NNRLMPRSCSTSASS+F      GSRS+TPSR  SDSM
Sbjct: 12   PFSYRKPSS--PYSSASSTTSYNNRLMPRSCSTSASSFF------GSRSVTPSRDRSDSM 63

Query: 72   Y----NSPRA-----PPVIFPSEELMAEPLDAPQRSGDSISVTIRFRPLSEREFQRGDEI 122
            +    N   A      PV F SEEL+AEP+D P+  GDSISVTIRFRPLSEREFQRGDEI
Sbjct: 64   HYGLSNGVGAYGGSLNPVGFGSEELIAEPIDQPRNGGDSISVTIRFRPLSEREFQRGDEI 123

Query: 123  AWYADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGV 182
            AW ADGDKIVRNEYNPATAYAFD+VFGPH  SQEVY+VAA+PVVKAAMEGVNGTVFAYGV
Sbjct: 124  AWSADGDKIVRNEYNPATAYAFDKVFGPHTASQEVYEVAAKPVVKAAMEGVNGTVFAYGV 183

Query: 183  TSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTG 242
            TSSGKTHTMHGDQNSPGIIPLAIKDVFS IQDTPGREFLLRVSYLEIYNEVINDLLDPTG
Sbjct: 184  TSSGKTHTMHGDQNSPGIIPLAIKDVFSSIQDTPGREFLLRVSYLEIYNEVINDLLDPTG 243

Query: 243  QNLRVREDAQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLM 302
            QNLRVREDAQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNL SSRSHTIFTLM
Sbjct: 244  QNLRVREDAQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLFSSRSHTIFTLM 303

Query: 303  IESSDHGDEYDGVIFSQLVRWFFLSVKTAYLFQLY--ESSKTETTGLRRKEGSYINKSLL 360
            IESS HGDEYDGVIFSQL            L  L   ESSKTETTG+RRKEGSYINKSLL
Sbjct: 304  IESSAHGDEYDGVIFSQL-----------NLIDLAGSESSKTETTGIRRKEGSYINKSLL 352

Query: 361  TLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKF 420
            TLGTVIGKLSEG+ASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASS+MEETHNTLKF
Sbjct: 353  TLGTVIGKLSEGRASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSNMEETHNTLKF 412

Query: 421  ASRAKRVEIYASRNKIIDEKSLIKKYQREISSLKEELDQLKRGILVGVSHEELMTLRQKL 480
            ASRAKRVEIYASRNKIIDEKSLIKKYQ+EISSLK+ELDQL+ G+L GVSHEE+++LRQKL
Sbjct: 413  ASRAKRVEIYASRNKIIDEKSLIKKYQKEISSLKQELDQLRHGMLAGVSHEEILSLRQKL 472

Query: 481  EEGQVKMQSRLEEEEEAKAALMSRIQRLTKLILVSTKNTIPGLSDVPNHQRSHSVGEDD- 539
            EEGQVKMQSRLEEEEEAKAALMSRIQRLTKLILVSTKNTIPGL+DVP HQ SHSVGEDD 
Sbjct: 473  EEGQVKMQSRLEEEEEAKAALMSRIQRLTKLILVSTKNTIPGLTDVPGHQPSHSVGEDDV 532

Query: 540  -GSLLLDGENQKDSTSSASGLASDLPSDFKHRRSSSKWNEEFSPTSSTVTESTQAGELIS 598
             G+LL + ENQKDS SSAS +ASDL  +FKHRRSSS WNEE SP SST            
Sbjct: 533  KGALLAENENQKDSPSSASLIASDLTYEFKHRRSSSMWNEELSPASST------------ 580

Query: 599  GSKHPIGGMTSDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREI 658
                  GGMT DQMDLLVEQVKMLAGEIAFS+S LKRLV+ SVNDPD SK QIQNLEREI
Sbjct: 581  ------GGMTQDQMDLLVEQVKMLAGEIAFSTSTLKRLVEHSVNDPDNSKTQIQNLEREI 634

Query: 659  QEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQE 718
            +EK+RQMR+LEQRIIE+GEAS+ANAS+VDMQQTV RLM+QCNEKAFELEIKSADNRILQE
Sbjct: 635  REKKRQMRVLEQRIIESGEASIANASLVDMQQTVMRLMTQCNEKAFELEIKSADNRILQE 694

Query: 719  QLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQS-QETENE 777
            QLQNKCSENK+LQ+KV LLE +LA  +GDK++ +S    S+EYVDEL+KKVQS QE ENE
Sbjct: 695  QLQNKCSENKELQDKVTLLEHRLASLSGDKASVNSEHNMSEEYVDELKKKVQSQQEIENE 754

Query: 778  KLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEK 837
            KLK+  VQ+SEENSGL VQNQKL+EEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEK
Sbjct: 755  KLKIGQVQISEENSGLRVQNQKLSEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEK 814

Query: 838  ELLAARESMHSRGAAMQTVNGVNRKYSDGMKAGRKGRLSGRSTEISGVVSDDFDSWNLDP 897
            ELLAARES+HSRGA MQ+VNGVNRK++DG++ GRKGR SGR  + SG+ SDDF+SWNLDP
Sbjct: 815  ELLAARESVHSRGAGMQSVNGVNRKFNDGIRHGRKGRFSGRGNDFSGMHSDDFESWNLDP 874

Query: 898  DDLKLELQARKQREAALEAALAEKEFLEDEYRKKVEESKRREEALENDLANMWVLVAKLK 957
            DDLK ELQARKQREAALEAALAEKEF+EDEYRKK EE+K+RE ALENDLANMWVLVAKLK
Sbjct: 875  DDLKRELQARKQREAALEAALAEKEFIEDEYRKKCEEAKKREGALENDLANMWVLVAKLK 934

Query: 958  KEVGSVPELNTVERHSNGEDRVCDPKAN--ETDCNTVLKDRHFLEVSKPADENSVERQVL 1015
            +E  ++  +N  ERHS+G D   DPK N  E D N++LK+R  L+ S+            
Sbjct: 935  REDSAIFGMNADERHSDGIDHTSDPKTNGVEVDRNSILKEREDLDASQ------------ 982

Query: 1016 DVPKPADETPKEEPLVARLKARMQEMKEKEQKYQGNGDPNSHMCKVCFESPTAAILLPCR 1075
                  DETPKEEPLV RLKAR+QEMKEKE K  GNGD NSH+CKVCFESPTAAILLPCR
Sbjct: 983  -----VDETPKEEPLVVRLKARIQEMKEKELKQLGNGDANSHVCKVCFESPTAAILLPCR 1037

Query: 1076 HFCLCKSCSLACSECPICRTKISDRLFAFT 1105
            HFCLCKSCSLACSECPICRTKI+DRLFAFT
Sbjct: 1038 HFCLCKSCSLACSECPICRTKIADRLFAFT 1067

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225427728|ref|XP_002265593.1| PREDICTED: uncharacterized protein LOC100253714 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147864402|emb|CAN80502.1| hypothetical protein VITISV_007231 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224103343|ref|XP_002313019.1| predicted protein [Populus trichocarpa] gi|222849427|gb|EEE86974.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297744752|emb|CBI38014.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357473457|ref|XP_003607013.1| Kinesin heavy chain-like protein [Medicago truncatula] gi|355508068|gb|AES89210.1| Kinesin heavy chain-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|255543819|ref|XP_002512972.1| kinesin heavy chain, putative [Ricinus communis] gi|223547983|gb|EEF49475.1| kinesin heavy chain, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356538724|ref|XP_003537851.1| PREDICTED: uncharacterized protein LOC100780424 [Glycine max] Back     alignment and taxonomy information
>gi|449464854|ref|XP_004150144.1| PREDICTED: chromosome-associated kinesin KIF4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297797890|ref|XP_002866829.1| hypothetical protein ARALYDRAFT_327857 [Arabidopsis lyrata subsp. lyrata] gi|297312665|gb|EFH43088.1| hypothetical protein ARALYDRAFT_327857 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1105
TAIR|locus:21201871055 AT4G39050 [Arabidopsis thalian 0.678 0.710 0.603 4e-266
TAIR|locus:20500441058 AT2G21380 [Arabidopsis thalian 0.684 0.714 0.591 4.5e-217
TAIR|locus:2036987890 AT1G21730 [Arabidopsis thalian 0.570 0.707 0.491 7.7e-146
TAIR|locus:2144103986 AT5G06670 [Arabidopsis thalian 0.540 0.605 0.507 1.5e-145
DICTYBASE|DDB_G0291039685 kif11 "kinesin-7" [Dictyosteli 0.466 0.751 0.414 3.9e-100
UNIPROTKB|O42263 2954 cenpe "Kinesin-related protein 0.607 0.227 0.307 4.1e-79
ZFIN|ZDB-GENE-060929-860 2690 cenpe "centromere protein E" [ 0.610 0.250 0.308 1.2e-75
DICTYBASE|DDB_G0285101 1922 kif4 "kinesin-7" [Dictyosteliu 0.595 0.342 0.311 1.7e-74
UNIPROTKB|E1BQJ6 2616 E1BQJ6 "Uncharacterized protei 0.342 0.144 0.417 7.1e-73
TAIR|locus:2202862823 ZCF125 [Arabidopsis thaliana ( 0.605 0.812 0.302 5e-71
TAIR|locus:2120187 AT4G39050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2121 (751.7 bits), Expect = 4.0e-266, Sum P(3) = 4.0e-266
 Identities = 476/789 (60%), Positives = 568/789 (71%)

Query:    21 PYXXXXXXXXXFMNNRLMPRSCSTSASSYFNSGNGLGSRSMTPSRSCSDS-MYNSPR--- 76
             P           ++NRL+PRS STSASS   S  G+ SRSMTPSR+ SDS +  S     
Sbjct:    13 PPSPASSTSSSHLSNRLIPRSNSTSASSLITSAAGIASRSMTPSRTFSDSGLIGSGSFGI 72

Query:    77 APPVIFPSEELMAEPLDAPQRSG-DSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNE 135
               PV +PSEEL+ +P+D    S  DSISVT+RFRPLS+RE+QRGDE+AWY DGD +VR+E
Sbjct:    73 GSPVPYPSEELLGDPMDDTISSERDSISVTVRFRPLSDREYQRGDEVAWYPDGDTLVRHE 132

Query:   136 YNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQ 195
             YNP TAYAFD+VFGP A + +VYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQ
Sbjct:   133 YNPLTAYAFDKVFGPQATTIDVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQ 192

Query:   196 NSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDAQGTY 255
              SPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVRED+QGTY
Sbjct:   193 ESPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDSQGTY 252

Query:   256 VEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGV 315
             VEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLM+ESS  GDEYDGV
Sbjct:   253 VEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMVESSATGDEYDGV 312

Query:   316 IFSQLVRWFFLSVKTAYLFQLYESSKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKAS 375
             IFSQL     + +  +      ESSKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKA+
Sbjct:   313 IFSQLN---LIDLAGS------ESSKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKAT 363

Query:   376 HVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVEIYASRNK 435
             H+PYRDSKLTRLLQSSLSGHGHVSLICT+TPASSS EETHNTLKFASRAK +EIYASRN+
Sbjct:   364 HIPYRDSKLTRLLQSSLSGHGHVSLICTITPASSSSEETHNTLKFASRAKSIEIYASRNQ 423

Query:   436 IIDEKSLIKKYQREISSLKEELDQLKRGILVGVSHEELMTLRQKLEEGQVKMQSRLXXXX 495
             IIDEKSLIKKYQREIS+LK ELDQL+RG+LVGVSHEELM+L+Q+LEEGQVKMQSRL    
Sbjct:   424 IIDEKSLIKKYQREISTLKLELDQLRRGMLVGVSHEELMSLKQQLEEGQVKMQSRLEEEE 483

Query:   496 XAKAALMSRIQRLTKLILVSTKNTIPGLS-DVPNHQRSHSVGEDD--GSLLLDGENQKDS 552
              AKAALMSRIQ+LTKLILVSTKN+IPG S D+P HQRS S G+DD   SLLL+ +N   S
Sbjct:   484 EAKAALMSRIQKLTKLILVSTKNSIPGYSGDIPTHQRSLSAGKDDKFDSLLLESDNL-GS 542

Query:   553 TSSASGLASDLPSDFKHRRSSSKWNEEFSPTSSTVTESTQAGELISGSKHPIGGMTSDQM 612
              SS   L S+    F HRRSSSK N+E SP  +  T+     + I      +  M + ++
Sbjct:   543 PSSTLALLSEGSLGFNHRRSSSKLNDENSP-GAEFTQGVMTPDEIDLLVEQVK-MLAGEI 600

Query:   613 DLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRI 672
                   +K L  +      N +  +     +    + Q++ LE+ I E   +  I    +
Sbjct:   601 AFSTSTLKRLVDQSVNDPENSQTQIQNLEREIHEKQRQMRGLEQLIIESG-EASIANASL 659

Query:   673 IENGEASMANASMVDMQQTVTRLMSQCNEKAFE-LEIKSADNRILQEQLQNKCSENKKLQ 731
             +E  +  M+  +  + +     + S  N    E L+ K  +N+ L E++         L+
Sbjct:   660 VEMQQKVMSLMTQCNEKSFELEIKSADNCILQEQLQEKCTENKELHEKVN-------LLE 712

Query:   732 EKVNLLEQQLA---CQN----GDKSAGSSGQGTSDEYV-DELR-KKVQSQETENEKLKLE 782
             +++N +  + +   C N    G+ +     +  S E   +EL+ + VQ  E EN  L+++
Sbjct:   713 QRLNAVSSEKSSPSCSNKAVSGEYADELKKKIQSQEIENEELKLEHVQIVE-ENSGLRVQ 771

Query:   783 HVQLSEENS 791
             + +L+EE S
Sbjct:   772 NQKLAEEAS 780
GO:0003777 "microtubule motor activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0007018 "microtubule-based movement" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
GO:0031347 "regulation of defense response" evidence=IMP
TAIR|locus:2050044 AT2G21380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036987 AT1G21730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144103 AT5G06670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0291039 kif11 "kinesin-7" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|O42263 cenpe "Kinesin-related protein" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060929-860 cenpe "centromere protein E" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0285101 kif4 "kinesin-7" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|E1BQJ6 E1BQJ6 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
TAIR|locus:2202862 ZCF125 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1105
cd01374321 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E 1e-166
pfam00225326 pfam00225, Kinesin, Kinesin motor domain 1e-118
smart00129335 smart00129, KISc, Kinesin motor, catalytic domain 1e-108
cd00106328 cd00106, KISc, Kinesin motor domain 1e-106
cd01369325 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kine 9e-95
cd01371333 cd01371, KISc_KIF3, Kinesin motor domain, kinesins 5e-86
cd01372341 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-lik 2e-85
cd01370338 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP 2e-82
cd01364352 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC 1e-77
cd01365356 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, K 1e-76
cd01366329 cd01366, KISc_C_terminal, Kinesin motor domain, KI 7e-75
cd01373337 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP 4e-72
COG5059568 COG5059, KIP1, Kinesin-like protein [Cytoskeleton] 4e-67
cd01368345 cd01368, KISc_KIF23_like, Kinesin motor domain, KI 2e-65
cd01367322 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF 3e-63
cd01376319 cd01376, KISc_KID_like, Kinesin motor domain, KIF2 5e-62
cd01375334 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF 3e-59
PLN03188 1320 PLN03188, PLN03188, kinesin-12 family protein; Pro 3e-49
pfam1392049 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RI 2e-17
cd01363186 cd01363, Motor_domain, Myosin and Kinesin motor do 2e-16
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-10
cd01363186 cd01363, Motor_domain, Myosin and Kinesin motor do 8e-10
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 8e-10
pfam1392345 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI 1e-08
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-08
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 8e-08
cd0016245 cd00162, RING, RING-finger (Really Interesting New 3e-07
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 7e-07
pfam1363946 pfam13639, zf-RING_2, Ring finger domain 4e-06
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 4e-06
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 7e-06
smart0018440 smart00184, RING, Ring finger 3e-05
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 8e-05
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 8e-05
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 1e-04
COG4372499 COG4372, COG4372, Uncharacterized protein conserve 2e-04
COG2433652 COG2433, COG2433, Uncharacterized conserved protei 4e-04
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 0.001
pfam03961450 pfam03961, DUF342, Protein of unknown function (DU 0.001
pfam05557 722 pfam05557, MAD, Mitotic checkpoint protein 0.002
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.003
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.004
>gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis Back     alignment and domain information 
 Score =  492 bits (1270), Expect = e-166
 Identities = 192/333 (57%), Positives = 232/333 (69%), Gaps = 18/333 (5%)

Query: 101 SISVTIRFRPLSEREFQRGDEIAWYADGDK-IVRNEYNPATAYAFDRVFGPHANSQEVYD 159
            I V++R RPL+ RE    +++AW  D D  I   E  P  ++ FDRVFG  + ++EVY+
Sbjct: 1   KIKVSVRVRPLNPRE-SDNEQVAWSIDNDNTISLEESTPGQSFTFDRVFGGESTNREVYE 59

Query: 160 VAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTPGRE 219
             A+PVV++A+EG NGT+FAYG TSSGKT TM GD+  PGIIPLA++D+F  IQDTP RE
Sbjct: 60  RIAKPVVRSALEGYNGTIFAYGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQDTPDRE 119

Query: 220 FLLRVSYLEIYNEVINDLLDPTGQNLRVREDAQ-GTYVEGIKEEVVLSPGHALSFIAAGE 278
           FLLRVSYLEIYNE I DLL P+ Q LR+RED   G  V G+ EE+V SP H L  IA GE
Sbjct: 120 FLLRVSYLEIYNEKIKDLLSPSPQELRIREDPNKGVVVAGLTEEIVTSPEHLLQLIARGE 179

Query: 279 EHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDG-VIFSQLVRWFFLSVKTAYLFQL- 336
           ++RHVG  +FN  SSRSHTIF L IES + GD   G V  S L            L  L 
Sbjct: 180 KNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTL-----------NLIDLA 228

Query: 337 -YESSKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKAS-HVPYRDSKLTRLLQSSLSG 394
             E +     G RRKEGS+INKSLLTLGTVI KLSEGK S H+PYRDSKLTR+LQ SLSG
Sbjct: 229 GSERASQTGAGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSG 288

Query: 395 HGHVSLICTVTPASSSMEETHNTLKFASRAKRV 427
           +   ++ICT++PASS +EET NTLKFASRAK+V
Sbjct: 289 NARTAIICTISPASSHVEETLNTLKFASRAKKV 321

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 321
>gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain Back     alignment and domain information
>gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain Back     alignment and domain information
>gnl|CDD|238054 cd00106, KISc, Kinesin motor domain Back     alignment and domain information
>gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup Back     alignment and domain information
>gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like proteins Back     alignment and domain information
>gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily Back     alignment and domain information
>gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup Back     alignment and domain information
>gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division Back     alignment and domain information
>gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like proteins Back     alignment and domain information
>gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins Back     alignment and domain information
>gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup Back     alignment and domain information
>gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like subgroup Back     alignment and domain information
>gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group Back     alignment and domain information
>gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like subgroup Back     alignment and domain information
>gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling Back     alignment and domain information
>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional Back     alignment and domain information
>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger) Back     alignment and domain information
>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger) Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|214546 smart00184, RING, Ring finger Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342) Back     alignment and domain information
>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1105
KOG02431041 consensus Kinesin-like protein [Cytoskeleton] 100.0
KOG0245 1221 consensus Kinesin-like protein [Cytoskeleton] 100.0
KOG4280574 consensus Kinesin-like protein [Cytoskeleton] 100.0
PLN03188 1320 kinesin-12 family protein; Provisional 100.0
KOG0242675 consensus Kinesin-like protein [Cytoskeleton] 100.0
KOG0240607 consensus Kinesin (SMY1 subfamily) [Cytoskeleton] 100.0
KOG0241 1714 consensus Kinesin-like protein [Cytoskeleton] 100.0
cd01373337 KISc_KLP2_like Kinesin motor domain, KLP2-like sub 100.0
cd01370338 KISc_KIP3_like Kinesin motor domain, KIP3-like sub 100.0
cd01368345 KISc_KIF23_like Kinesin motor domain, KIF23-like s 100.0
cd01365356 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like p 100.0
cd01374321 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like 100.0
cd01367322 KISc_KIF2_like Kinesin motor domain, KIF2-like gro 100.0
cd01371333 KISc_KIF3 Kinesin motor domain, kinesins II or KIF 100.0
cd01364352 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spind 100.0
cd01369325 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy 100.0
cd01376319 KISc_KID_like Kinesin motor domain, KIF22/Kid-like 100.0
cd01372341 KISc_KIF4 Kinesin motor domain, KIF4-like subfamil 100.0
cd01375334 KISc_KIF9_like Kinesin motor domain, KIF9-like sub 100.0
cd01366329 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ 100.0
KOG0239670 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] 100.0
smart00129335 KISc Kinesin motor, catalytic domain. ATPase. Micr 100.0
cd00106328 KISc Kinesin motor domain. This catalytic (head) d 100.0
PF00225335 Kinesin: Kinesin motor domain; InterPro: IPR001752 100.0
KOG0246676 consensus Kinesin-like protein [Cytoskeleton] 100.0
KOG0244913 consensus Kinesin-like protein [Cytoskeleton] 100.0
KOG0247809 consensus Kinesin-like protein [Cytoskeleton] 100.0
COG5059568 KIP1 Kinesin-like protein [Cytoskeleton] 100.0
cd01363186 Motor_domain Myosin and Kinesin motor domain. Thes 100.0
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 99.61
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 99.4
KOG4265349 consensus Predicted E3 ubiquitin ligase [Posttrans 99.23
KOG417262 consensus Predicted E3 ubiquitin ligase [Posttrans 99.09
KOG4275350 consensus Predicted E3 ubiquitin ligase [Posttrans 98.9
PF1392050 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); 98.81
KOG1571355 consensus Predicted E3 ubiquitin ligase [Posttrans 98.73
KOG1100207 consensus Predicted E3 ubiquitin ligase [Posttrans 98.4
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 98.4
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 98.22
KOG0823 230 consensus Predicted E3 ubiquitin ligase [Posttrans 98.18
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 98.14
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 98.13
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 98.08
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 98.07
COG11961163 Smc Chromosome segregation ATPases [Cell division 98.05
COG11961163 Smc Chromosome segregation ATPases [Cell division 97.94
PLN03208 193 E3 ubiquitin-protein ligase RMA2; Provisional 97.94
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 97.84
KOG0320187 consensus Predicted E3 ubiquitin ligase [Posttrans 97.84
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 97.8
KOG0971 1243 consensus Microtubule-associated protein dynactin 97.79
KOG09961293 consensus Structural maintenance of chromosome pro 97.76
KOG01611930 consensus Myosin class II heavy chain [Cytoskeleto 97.76
PRK02224880 chromosome segregation protein; Provisional 97.75
KOG0317293 consensus Predicted E3 ubiquitin ligase, integral 97.74
TIGR006061311 rad50 rad50. This family is based on the phylogeno 97.74
TIGR006061311 rad50 rad50. This family is based on the phylogeno 97.7
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 97.69
COG4372499 Uncharacterized protein conserved in bacteria with 97.69
KOG4673 961 consensus Transcription factor TMF, TATA element m 97.69
PRK02224880 chromosome segregation protein; Provisional 97.64
PF09730717 BicD: Microtubule-associated protein Bicaudal-D; I 97.64
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 97.63
PRK11637428 AmiB activator; Provisional 97.63
PHA02929238 N1R/p28-like protein; Provisional 97.62
PF10174 775 Cast: RIM-binding protein of the cytomatrix active 97.62
KOG09331174 consensus Structural maintenance of chromosome pro 97.61
PF1463444 zf-RING_5: zinc-RING finger domain 97.58
KOG09331174 consensus Structural maintenance of chromosome pro 97.58
PRK11637428 AmiB activator; Provisional 97.57
PF14662193 CCDC155: Coiled-coil region of CCDC155 97.53
PF1392339 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); 97.52
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 97.48
KOG2164 513 consensus Predicted E3 ubiquitin ligase [Posttrans 97.46
KOG0977546 consensus Nuclear envelope protein lamin, intermed 97.43
PF10174775 Cast: RIM-binding protein of the cytomatrix active 97.41
KOG0971 1243 consensus Microtubule-associated protein dynactin 97.4
PF04849306 HAP1_N: HAP1 N-terminal conserved region; InterPro 97.34
PF0882661 DMPK_coil: DMPK coiled coil domain like; InterPro: 97.32
PF15070617 GOLGA2L5: Putative golgin subfamily A member 2-lik 97.29
KOG4673961 consensus Transcription factor TMF, TATA element m 97.28
PF00038312 Filament: Intermediate filament protein; InterPro: 97.25
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 97.24
PF1363944 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 97.23
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 97.23
PRK03918880 chromosome segregation protein; Provisional 97.22
PF15070 617 GOLGA2L5: Putative golgin subfamily A member 2-lik 97.18
PRK04863 1486 mukB cell division protein MukB; Provisional 97.17
TIGR00599 397 rad18 DNA repair protein rad18. This family is bas 97.17
PHA02562562 46 endonuclease subunit; Provisional 97.16
PHA02926242 zinc finger-like protein; Provisional 97.16
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 97.14
PRK04863 1486 mukB cell division protein MukB; Provisional 97.13
KOG0977546 consensus Nuclear envelope protein lamin, intermed 97.12
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 97.09
PF00038312 Filament: Intermediate filament protein; InterPro: 97.09
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 97.07
PRK04778569 septation ring formation regulator EzrA; Provision 97.04
COG5574271 PEX10 RING-finger-containing E3 ubiquitin ligase [ 97.03
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 97.01
PF1444755 Prok-RING_4: Prokaryotic RING finger family 4 97.0
PHA02562562 46 endonuclease subunit; Provisional 96.99
smart0018439 RING Ring finger. E3 ubiquitin-protein ligase acti 96.98
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 96.96
cd0016245 RING RING-finger (Really Interesting New Gene) dom 96.96
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 96.96
COG5432 391 RAD18 RING-finger-containing E3 ubiquitin ligase [ 96.91
COG5059568 KIP1 Kinesin-like protein [Cytoskeleton] 96.91
KOG0287 442 consensus Postreplication repair protein RAD18 [Re 96.9
KOG0996 1293 consensus Structural maintenance of chromosome pro 96.87
KOG4643 1195 consensus Uncharacterized coiled-coil protein [Fun 96.86
PRK03918 880 chromosome segregation protein; Provisional 96.86
KOG0963629 consensus Transcription factor/CCAAT displacement 96.84
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 96.81
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 96.81
KOG1785 563 consensus Tyrosine kinase negative regulator CBL [ 96.79
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 96.77
PF1522742 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 96.76
PF09787511 Golgin_A5: Golgin subfamily A member 5; InterPro: 96.73
PF0009741 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I 96.72
KOG0980 980 consensus Actin-binding protein SLA2/Huntingtin-in 96.72
KOG0999 772 consensus Microtubule-associated protein Bicaudal- 96.72
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 96.69
PRK01156895 chromosome segregation protein; Provisional 96.65
PRK09039343 hypothetical protein; Validated 96.61
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 96.57
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 96.56
smart0050463 Ubox Modified RING finger domain. Modified RING fi 96.56
KOG4692489 consensus Predicted E3 ubiquitin ligase [Posttrans 96.54
COG4942420 Membrane-bound metallopeptidase [Cell division and 96.53
PF05483786 SCP-1: Synaptonemal complex protein 1 (SCP-1); Int 96.52
PRK11281 1113 hypothetical protein; Provisional 96.49
KOG0964 1200 consensus Structural maintenance of chromosome pro 96.47
PF05701522 WEMBL: Weak chloroplast movement under blue light; 96.47
KOG0249 916 consensus LAR-interacting protein and related prot 96.46
PRK10929 1109 putative mechanosensitive channel protein; Provisi 96.39
COG4942420 Membrane-bound metallopeptidase [Cell division and 96.32
PF1344543 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A. 96.26
KOG4643 1195 consensus Uncharacterized coiled-coil protein [Fun 96.26
COG5540374 RING-finger-containing ubiquitin ligase [Posttrans 96.23
COG5236 493 Uncharacterized conserved protein, contains RING Z 96.17
PF09730 717 BicD: Microtubule-associated protein Bicaudal-D; I 96.12
PF05701522 WEMBL: Weak chloroplast movement under blue light; 96.03
PRK09039343 hypothetical protein; Validated 96.02
PF1483565 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM 96.0
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 95.99
COG5185622 HEC1 Protein involved in chromosome segregation, i 95.92
PF04849306 HAP1_N: HAP1 N-terminal conserved region; InterPro 95.86
COG4372499 Uncharacterized protein conserved in bacteria with 95.85
PF06818202 Fez1: Fez1; InterPro: IPR009638 This family repres 95.79
KOG2177 386 consensus Predicted E3 ubiquitin ligase [Posttrans 95.76
KOG00181141 consensus Structural maintenance of chromosome pro 95.74
KOG1813313 consensus Predicted E3 ubiquitin ligase [Posttrans 95.73
KOG0946970 consensus ER-Golgi vesicle-tethering protein p115 95.7
PF10481307 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0 95.68
PF14662193 CCDC155: Coiled-coil region of CCDC155 95.67
COG5152259 Uncharacterized conserved protein, contains RING a 95.58
KOG0980 980 consensus Actin-binding protein SLA2/Huntingtin-in 95.58
PF05622713 HOOK: HOOK protein; InterPro: IPR008636 This famil 95.57
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 95.46
KOG0964 1200 consensus Structural maintenance of chromosome pro 95.38
PF06818202 Fez1: Fez1; InterPro: IPR009638 This family repres 95.32
COG5243 491 HRD1 HRD ubiquitin ligase complex, ER membrane com 95.24
TIGR03007498 pepcterm_ChnLen polysaccharide chain length determ 95.2
PF06160560 EzrA: Septation ring formation regulator, EzrA ; I 95.15
KOG4687389 consensus Uncharacterized coiled-coil protein [Fun 95.1
KOG0963 629 consensus Transcription factor/CCAAT displacement 94.97
PF1267873 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 94.96
PF135141111 AAA_27: AAA domain 94.85
PF05557 722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 94.82
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 94.64
PF14915305 CCDC144C: CCDC144C protein coiled-coil region 94.63
PF05911 769 DUF869: Plant protein of unknown function (DUF869) 94.55
PF01576 859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 94.51
PF13851201 GAS: Growth-arrest specific micro-tubule binding 94.49
PF09789319 DUF2353: Uncharacterized coiled-coil protein (DUF2 94.49
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 94.48
KOG05791187 consensus Ste20-like serine/threonine protein kina 94.46
KOG0249 916 consensus LAR-interacting protein and related prot 94.4
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 94.36
PF07926132 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: 94.34
KOG2113394 consensus Predicted RNA binding protein, contains 94.25
PF05622713 HOOK: HOOK protein; InterPro: IPR008636 This famil 94.24
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 94.23
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 94.23
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 94.12
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 94.09
TIGR02680 1353 conserved hypothetical protein TIGR02680. Members 94.08
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 94.06
KOG4159 398 consensus Predicted E3 ubiquitin ligase [Posttrans 93.98
KOG3039303 consensus Uncharacterized conserved protein [Funct 93.95
KOG0802 543 consensus E3 ubiquitin ligase [Posttranslational m 93.9
KOG2879298 consensus Predicted E3 ubiquitin ligase [Posttrans 93.82
PF06785401 UPF0242: Uncharacterised protein family (UPF0242); 93.77
PF00308219 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 93.75
PF15066527 CAGE1: Cancer-associated gene protein 1 family 93.66
KOG4593716 consensus Mitotic checkpoint protein MAD1 [Cell cy 93.65
KOG4628348 consensus Predicted E3 ubiquitin ligase [Posttrans 93.59
PRK01156895 chromosome segregation protein; Provisional 93.52
KOG4360 596 consensus Uncharacterized coiled coil protein [Fun 93.52
KOG0946970 consensus ER-Golgi vesicle-tethering protein p115 93.47
PRK10929 1109 putative mechanosensitive channel protein; Provisi 93.39
PF0456473 U-box: U-box domain; InterPro: IPR003613 Quality c 93.36
PF15254861 CCDC14: Coiled-coil domain-containing protein 14 93.33
TIGR02680 1353 conserved hypothetical protein TIGR02680. Members 93.17
PRK11281 1113 hypothetical protein; Provisional 93.13
TIGR01843423 type_I_hlyD type I secretion membrane fusion prote 93.12
KOG09621294 consensus DNA repair protein RAD50, ABC-type ATPas 93.11
COG0556663 UvrB Helicase subunit of the DNA excision repair c 93.03
PF09789319 DUF2353: Uncharacterized coiled-coil protein (DUF2 92.96
KOG0018 1141 consensus Structural maintenance of chromosome pro 92.91
KOG0311 381 consensus Predicted E3 ubiquitin ligase [Posttrans 92.88
KOG1937521 consensus Uncharacterized conserved protein [Funct 92.88
PF06160560 EzrA: Septation ring formation regulator, EzrA ; I 92.86
COG3883265 Uncharacterized protein conserved in bacteria [Fun 92.79
PF04641260 Rtf2: Rtf2 RING-finger 92.76
COG1340294 Uncharacterized archaeal coiled-coil protein [Func 92.68
KOG0979 1072 consensus Structural maintenance of chromosome pro 92.62
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 92.6
COG3883265 Uncharacterized protein conserved in bacteria [Fun 92.54
PF05557 722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 92.5
COG1340294 Uncharacterized archaeal coiled-coil protein [Func 92.5
KOG09621294 consensus DNA repair protein RAD50, ABC-type ATPas 92.47
COG4717984 Uncharacterized conserved protein [Function unknow 92.45
PRK04778569 septation ring formation regulator EzrA; Provision 92.42
COG2433652 Uncharacterized conserved protein [Function unknow 92.29
KOG4593 716 consensus Mitotic checkpoint protein MAD1 [Cell cy 92.21
PRK06893229 DNA replication initiation factor; Validated 92.11
KOG0825 1134 consensus PHD Zn-finger protein [General function 92.01
PRK06620214 hypothetical protein; Validated 91.93
KOG4302 660 consensus Microtubule-associated protein essential 91.9
KOG1853333 consensus LIS1-interacting protein NUDE [Cytoskele 91.83
KOG0828636 consensus Predicted E3 ubiquitin ligase [Posttrans 91.83
TIGR03017444 EpsF chain length determinant protein EpsF. Sequen 91.78
PF07111739 HCR: Alpha helical coiled-coil rod protein (HCR); 91.78
COG2804500 PulE Type II secretory pathway, ATPase PulE/Tfp pi 91.59
TIGR03007498 pepcterm_ChnLen polysaccharide chain length determ 91.47
PF13870177 DUF4201: Domain of unknown function (DUF4201) 91.43
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 91.39
KOG1001 674 consensus Helicase-like transcription factor HLTF/ 91.36
PF0600572 DUF904: Protein of unknown function (DUF904); Inte 91.09
PF1419769 Cep57_CLD_2: Centrosome localisation domain of PPC 91.06
PF01576 859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 90.89
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 90.85
COG3096 1480 MukB Uncharacterized protein involved in chromosom 90.84
PF09728309 Taxilin: Myosin-like coiled-coil protein; InterPro 90.67
PF09755310 DUF2046: Uncharacterized conserved protein H4 (DUF 90.64
PF07926132 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: 90.43
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 90.41
KOG1039 344 consensus Predicted E3 ubiquitin ligase [Posttrans 90.41
TIGR01005 754 eps_transp_fam exopolysaccharide transport protein 90.34
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 90.23
COG0419908 SbcC ATPase involved in DNA repair [DNA replicatio 90.05
PF04111314 APG6: Autophagy protein Apg6; InterPro: IPR007243 90.04
PF10481307 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0 89.97
KOG1814 445 consensus Predicted E3 ubiquitin ligase [Posttrans 89.92
COG2805353 PilT Tfp pilus assembly protein, pilus retraction 89.76
PF10473140 CENP-F_leu_zip: Leucine-rich repeats of kinetochor 89.72
PF07111739 HCR: Alpha helical coiled-coil rod protein (HCR); 89.67
PF1286185 zf-Apc11: Anaphase-promoting complex subunit 11 RI 89.66
KOG3002 299 consensus Zn finger protein [General function pred 89.66
PF04012221 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T 89.55
PF10473140 CENP-F_leu_zip: Leucine-rich repeats of kinetochor 89.48
PF06785401 UPF0242: Uncharacterised protein family (UPF0242); 89.44
PF15035182 Rootletin: Ciliary rootlet component, centrosome c 89.44
KOG4005292 consensus Transcription factor XBP-1 [Transcriptio 89.14
KOG4360596 consensus Uncharacterized coiled coil protein [Fun 88.97
TIGR01005754 eps_transp_fam exopolysaccharide transport protein 88.9
TIGR00634563 recN DNA repair protein RecN. All proteins in this 88.84
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 88.54
PF10267395 Tmemb_cc2: Predicted transmembrane and coiled-coil 88.46
PRK12377248 putative replication protein; Provisional 88.45
PRK05642234 DNA replication initiation factor; Validated 88.41
PF05911769 DUF869: Plant protein of unknown function (DUF869) 88.35
PRK14086617 dnaA chromosomal replication initiation protein; P 88.32
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 88.09
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 87.96
PRK08084235 DNA replication initiation factor; Provisional 87.93
PF0600572 DUF904: Protein of unknown function (DUF904); Inte 87.83
PRK06835329 DNA replication protein DnaC; Validated 87.76
PRK08116268 hypothetical protein; Validated 87.57
TIGR00634563 recN DNA repair protein RecN. All proteins in this 87.54
PRK09087226 hypothetical protein; Validated 87.53
PRK14088440 dnaA chromosomal replication initiation protein; P 87.42
PF04156191 IncA: IncA protein; InterPro: IPR007285 Chlamydia 87.36
PRK10884206 SH3 domain-containing protein; Provisional 87.3
TIGR01843423 type_I_hlyD type I secretion membrane fusion prote 87.2
PRK06526254 transposase; Provisional 87.11
PF00769246 ERM: Ezrin/radixin/moesin family; InterPro: IPR011 86.97
PRK14087450 dnaA chromosomal replication initiation protein; P 86.84
PF14988206 DUF4515: Domain of unknown function (DUF4515) 86.65
COG4026290 Uncharacterized protein containing TOPRIM domain, 86.64
KOG0999 772 consensus Microtubule-associated protein Bicaudal- 86.63
KOG4807593 consensus F-actin binding protein, regulates actin 86.62
PF10186302 Atg14: UV radiation resistance protein and autopha 86.32
TIGR00362405 DnaA chromosomal replication initiator protein Dna 86.3
PF10186302 Atg14: UV radiation resistance protein and autopha 86.17
KOG1962216 consensus B-cell receptor-associated protein and r 86.17
KOG1853333 consensus LIS1-interacting protein NUDE [Cytoskele 86.11
PRK00149450 dnaA chromosomal replication initiation protein; R 85.93
PRK10884206 SH3 domain-containing protein; Provisional 85.47
PRK07952244 DNA replication protein DnaC; Validated 85.32
PF08172248 CASP_C: CASP C terminal; InterPro: IPR012955 This 85.09
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 85.01
PF13514 1111 AAA_27: AAA domain 84.9
KOG4677554 consensus Golgi integral membrane protein [Intrace 84.76
KOG1002 791 consensus Nucleotide excision repair protein RAD16 84.58
KOG0239670 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] 84.56
COG0593408 DnaA ATPase involved in DNA replication initiation 84.25
COG1474366 CDC6 Cdc6-related protein, AAA superfamily ATPase 84.22
PRK08903227 DnaA regulatory inactivator Hda; Validated 84.17
PF12795240 MscS_porin: Mechanosensitive ion channel porin dom 84.13
PLN03229762 acetyl-coenzyme A carboxylase carboxyl transferase 83.96
PF09738302 DUF2051: Double stranded RNA binding protein (DUF2 83.94
PRK102461047 exonuclease subunit SbcC; Provisional 83.93
PF04111314 APG6: Autophagy protein Apg6; InterPro: IPR007243 83.89
PF14073178 Cep57_CLD: Centrosome localisation domain of Cep57 83.71
KOG0243 1041 consensus Kinesin-like protein [Cytoskeleton] 83.66
TIGR02928365 orc1/cdc6 family replication initiation protein. M 83.65
PF11932251 DUF3450: Protein of unknown function (DUF3450); In 83.44
PF05483786 SCP-1: Synaptonemal complex protein 1 (SCP-1); Int 83.31
PF07058351 Myosin_HC-like: Myosin II heavy chain-like; InterP 83.3
KOG1103561 consensus Predicted coiled-coil protein [Function 83.27
KOG2113 394 consensus Predicted RNA binding protein, contains 82.98
PRK08727233 hypothetical protein; Validated 82.87
PRK00411394 cdc6 cell division control protein 6; Reviewed 82.63
PF15254861 CCDC14: Coiled-coil domain-containing protein 14 82.61
PF06156107 DUF972: Protein of unknown function (DUF972); Inte 82.49
KOG0982502 consensus Centrosomal protein Nuf [Cell cycle cont 82.23
PRK08181269 transposase; Validated 82.21
PF13851201 GAS: Growth-arrest specific micro-tubule binding 82.18
PRK1542279 septal ring assembly protein ZapB; Provisional 82.03
KOG1003205 consensus Actin filament-coating protein tropomyos 81.92
PRK08939306 primosomal protein DnaI; Reviewed 81.32
KOG4438446 consensus Centromere-associated protein NUF2 [Cell 81.0
KOG4809654 consensus Rab6 GTPase-interacting protein involved 80.95
PF04156191 IncA: IncA protein; InterPro: IPR007285 Chlamydia 80.94
PF10146230 zf-C4H2: Zinc finger-containing protein ; InterPro 80.78
PF13870177 DUF4201: Domain of unknown function (DUF4201) 80.59
PF04851184 ResIII: Type III restriction enzyme, res subunit; 80.53
PF15035182 Rootletin: Ciliary rootlet component, centrosome c 80.21
KOG2932 389 consensus E3 ubiquitin ligase involved in ubiquiti 80.14
>KOG0243 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=1e-84  Score=787.22  Aligned_cols=398  Identities=35%  Similarity=0.574  Sum_probs=337.6

Q ss_pred             CCCCCCEEEEEEeCCCChhhhccCCeEEEeecC-CE-EEecCC----CCCcceeeceecCCCCChhHHHhhhhHHHHHHH
Q 001297           96 QRSGDSISVTIRFRPLSEREFQRGDEIAWYADG-DK-IVRNEY----NPATAYAFDRVFGPHANSQEVYDVAARPVVKAA  169 (1105)
Q Consensus        96 ~~~~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~-~~-i~~~~~----~~~~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~  169 (1105)
                      .+.+.||+|+|||||++.+|......+++..+| .+ |.+...    .-.+.|+||+||||.+.|.+||+.++.|+|..|
T Consensus        45 ~e~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eV  124 (1041)
T KOG0243|consen   45 KEKEVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIASKQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEV  124 (1041)
T ss_pred             CCCCCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecccccccccceeecceeeCcchhHHHHHHHHHHHHHHHH
Confidence            455679999999999999998888888887776 33 332222    236789999999999999999999999999999


Q ss_pred             hcCCCeEEEEeccCCCCCccccCC--------CCCCCCchhHHHHHHHHhhccCCCceEEEEEeeeeeecceeeeccCCC
Q 001297          170 MEGVNGTVFAYGVTSSGKTHTMHG--------DQNSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPT  241 (1105)
Q Consensus       170 l~G~n~tIfaYGqTGSGKTyTm~G--------~~~~~GIipra~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~DLL~p~  241 (1105)
                      +.|||||||||||||+||||||.|        .+..+|||||++.+||+.+.... .+|.|+|||+|+|||.|+|||+|.
T Consensus       125 l~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~~-~EYsvKVSfLELYNEEl~DLLa~~  203 (1041)
T KOG0243|consen  125 LEGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQG-AEYSVKVSFLELYNEELTDLLASE  203 (1041)
T ss_pred             hccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhcC-CeEEEEEEehhhhhHHHHHhcCCc
Confidence            999999999999999999999999        56788999999999999997654 899999999999999999999886


Q ss_pred             C---CccceeecC------CCcEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCCC-
Q 001297          242 G---QNLRVREDA------QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDE-  311 (1105)
Q Consensus       242 ~---~~l~ired~------~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~-  311 (1105)
                      .   ..+.+.+++      .|++|.||.+++|.++.|++.+|.+|...|++++|.||++|||||+||+|+|.....+.. 
T Consensus       204 ~~~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~~g  283 (1041)
T KOG0243|consen  204 DTSDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTPEG  283 (1041)
T ss_pred             cccccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCCcc
Confidence            4   345555555      479999999999999999999999999999999999999999999999999987665443 


Q ss_pred             CcceEeeeeehhhhhcccccccccccccc---ccccccccccccchhhhcHHHHHHHHHHhhcCCCCcccCCCCccchhc
Q 001297          312 YDGVIFSQLVRWFFLSVKTAYLFQLYESS---KTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLL  388 (1105)
Q Consensus       312 ~~~~~~s~l~~~~~~~~~~~~lvDLa~s~---k~~~~g~r~~E~~~INkSL~aLg~VI~aLs~~k~~hvPyRdSkLTrLL  388 (1105)
                      ..-+..++|+           ||||||++   ++|+.+.|.+|++.||+||+|||+||+||.++ ..|||||+|||||||
T Consensus       284 eelvK~GKLN-----------LVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~-s~HIPYRESKLTRLL  351 (1041)
T KOG0243|consen  284 EELVKIGKLN-----------LVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEH-SGHIPYRESKLTRLL  351 (1041)
T ss_pred             hhhHhhcccc-----------eeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHcc-CCCCCchHHHHHHHH
Confidence            2345667777           99999985   68888889999999999999999999999995 469999999999999


Q ss_pred             ccCCCCCccceeEeeeCCCCCCHHHHHHHHHHHHHhcccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHcccccCC
Q 001297          389 QSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQREISSLKEELDQLKRGILVGV  468 (1105)
Q Consensus       389 qdsLgGnskt~mI~~IsP~~~~~~ETlsTL~fA~rak~I~~~~~~n~~~~~~~~i~~~~~ei~~Lk~el~~l~~~~~~~~  468 (1105)
                      ||||||..||+|||||||+..+++||++||.||.|||+|+|+|.+|..+..+.+++.|-.||.+||.+|...+......+
T Consensus       352 QDSLGGkTKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaReKnGvyi  431 (1041)
T KOG0243|consen  352 QDSLGGKTKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAAREKNGVYI  431 (1041)
T ss_pred             HHHhCCCceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhhCceEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998876655555


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001297          469 SHEELMTLRQKLEEGQVKMQSRLEEEEEAKAALMSRIQRLTK  510 (1105)
Q Consensus       469 ~~~e~~~l~~~l~~~~~~~~~~l~~~~~~~~~l~~~i~~l~~  510 (1105)
                      +++........    ...+..++++.+....++..++..++.
T Consensus       432 see~y~~~e~e----~~~~~~~ieele~el~~~~~~l~~~~e  469 (1041)
T KOG0243|consen  432 SEERYTQEEKE----KKEMAEQIEELEEELENLEKQLKDLTE  469 (1041)
T ss_pred             chHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55544322111    122333344444444555555554443

>KOG0245 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>KOG4280 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>PLN03188 kinesin-12 family protein; Provisional Back     alignment and domain information
>KOG0242 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton] Back     alignment and domain information
>KOG0241 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup Back     alignment and domain information
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup Back     alignment and domain information
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup Back     alignment and domain information
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins Back     alignment and domain information
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis Back     alignment and domain information
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group Back     alignment and domain information
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins Back     alignment and domain information
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division Back     alignment and domain information
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup Back     alignment and domain information
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup Back     alignment and domain information
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily Back     alignment and domain information
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling Back     alignment and domain information
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins Back     alignment and domain information
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] Back     alignment and domain information
>smart00129 KISc Kinesin motor, catalytic domain Back     alignment and domain information
>cd00106 KISc Kinesin motor domain Back     alignment and domain information
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport Back     alignment and domain information
>KOG0246 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>KOG0244 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>KOG0247 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>cd01363 Motor_domain Myosin and Kinesin motor domain Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A Back     alignment and domain information
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PHA02929 N1R/p28-like protein; Provisional Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF14634 zf-RING_5: zinc-RING finger domain Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PF14662 CCDC155: Coiled-coil region of CCDC155 Back     alignment and domain information
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues Back     alignment and domain information
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>TIGR00599 rad18 DNA repair protein rad18 Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PHA02926 zinc finger-like protein; Provisional Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4 Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>smart00184 RING Ring finger Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] Back     alignment and domain information
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms] Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A Back     alignment and domain information
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure Back     alignment and domain information
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>smart00504 Ubox Modified RING finger domain Back     alignment and domain information
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex Back     alignment and domain information
>PRK11281 hypothetical protein; Provisional Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only] Back     alignment and domain information
>PRK10929 putative mechanosensitive channel protein; Provisional Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A Back     alignment and domain information
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] Back     alignment and domain information
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] Back     alignment and domain information
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues Back     alignment and domain information
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein Back     alignment and domain information
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore [] Back     alignment and domain information
>PF14662 CCDC155: Coiled-coil region of CCDC155 Back     alignment and domain information
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein Back     alignment and domain information
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily Back     alignment and domain information
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site Back     alignment and domain information
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] Back     alignment and domain information
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF13514 AAA_27: AAA domain Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14915 CCDC144C: CCDC144C protein coiled-coil region Back     alignment and domain information
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only] Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) Back     alignment and domain information
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only] Back     alignment and domain information
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR02680 conserved hypothetical protein TIGR02680 Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3039 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function Back     alignment and domain information
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication Back     alignment and domain information
>PF15066 CAGE1: Cancer-associated gene protein 1 family Back     alignment and domain information
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK10929 putative mechanosensitive channel protein; Provisional Back     alignment and domain information
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis Back     alignment and domain information
>PF15254 CCDC14: Coiled-coil domain-containing protein 14 Back     alignment and domain information
>TIGR02680 conserved hypothetical protein TIGR02680 Back     alignment and domain information
>PRK11281 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair] Back     alignment and domain information
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function Back     alignment and domain information
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1937 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site Back     alignment and domain information
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF04641 Rtf2: Rtf2 RING-finger Back     alignment and domain information
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair] Back     alignment and domain information
>COG4717 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>COG2433 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK06893 DNA replication initiation factor; Validated Back     alignment and domain information
>KOG0825 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>PRK06620 hypothetical protein; Validated Back     alignment and domain information
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton] Back     alignment and domain information
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03017 EpsF chain length determinant protein EpsF Back     alignment and domain information
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins Back     alignment and domain information
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily Back     alignment and domain information
>PF13870 DUF4201: Domain of unknown function (DUF4201) Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation Back     alignment and domain information
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89 Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning] Back     alignment and domain information
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed Back     alignment and domain information
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain Back     alignment and domain information
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore [] Back     alignment and domain information
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] Back     alignment and domain information
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins Back     alignment and domain information
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger Back     alignment and domain information
>KOG3002 consensus Zn finger protein [General function prediction only] Back     alignment and domain information
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription Back     alignment and domain information
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] Back     alignment and domain information
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function Back     alignment and domain information
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion Back     alignment and domain information
>KOG4005 consensus Transcription factor XBP-1 [Transcription] Back     alignment and domain information
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown] Back     alignment and domain information
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family Back     alignment and domain information
>TIGR00634 recN DNA repair protein RecN Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans Back     alignment and domain information
>PRK12377 putative replication protein; Provisional Back     alignment and domain information
>PRK05642 DNA replication initiation factor; Validated Back     alignment and domain information
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants Back     alignment and domain information
>PRK14086 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation Back     alignment and domain information
>PRK06835 DNA replication protein DnaC; Validated Back     alignment and domain information
>PRK08116 hypothetical protein; Validated Back     alignment and domain information
>TIGR00634 recN DNA repair protein RecN Back     alignment and domain information
>PRK09087 hypothetical protein; Validated Back     alignment and domain information
>PRK14088 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>PRK06526 transposase; Provisional Back     alignment and domain information
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] Back     alignment and domain information
>PRK14087 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PF14988 DUF4515: Domain of unknown function (DUF4515) Back     alignment and domain information
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only] Back     alignment and domain information
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton] Back     alignment and domain information
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking Back     alignment and domain information
>TIGR00362 DnaA chromosomal replication initiator protein DnaA Back     alignment and domain information
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking Back     alignment and domain information
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms] Back     alignment and domain information
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton] Back     alignment and domain information
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>PRK07952 DNA replication protein DnaC; Validated Back     alignment and domain information
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>PF13514 AAA_27: AAA domain Back     alignment and domain information
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only] Back     alignment and domain information
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] Back     alignment and domain information
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] Back     alignment and domain information
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK08903 DnaA regulatory inactivator Hda; Validated Back     alignment and domain information
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain Back     alignment and domain information
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional Back     alignment and domain information
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA Back     alignment and domain information
>PRK10246 exonuclease subunit SbcC; Provisional Back     alignment and domain information
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57 Back     alignment and domain information
>KOG0243 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>TIGR02928 orc1/cdc6 family replication initiation protein Back     alignment and domain information
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex Back     alignment and domain information
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana Back     alignment and domain information
>KOG1103 consensus Predicted coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only] Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information
>PRK00411 cdc6 cell division control protein 6; Reviewed Back     alignment and domain information
>PF15254 CCDC14: Coiled-coil domain-containing protein 14 Back     alignment and domain information
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication Back     alignment and domain information
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PRK08181 transposase; Validated Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>PRK15422 septal ring assembly protein ZapB; Provisional Back     alignment and domain information
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton] Back     alignment and domain information
>PRK08939 primosomal protein DnaI; Reviewed Back     alignment and domain information
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion Back     alignment and domain information
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF13870 DUF4201: Domain of unknown function (DUF4201) Back     alignment and domain information
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 Back     alignment and domain information
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion Back     alignment and domain information
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1105
1t5c_A349 Crystal Structure Of The Motor Domain Of Human Kine 3e-66
1mkj_A349 Human Kinesin Motor Domain With Docked Neck Linker 3e-59
4atx_C340 Rigor Kinesin Motor Domain With An Ordered Neck-Lin 4e-59
1bg2_A325 Human Ubiquitous Kinesin Motor Domain Length = 325 5e-59
2y5w_A365 Crystal Structure Of Drosophila Melanogaster Kinesi 6e-57
1goj_A355 Structure Of A Fast Kinesin: Implications For Atpas 1e-53
3b6u_A372 Crystal Structure Of The Motor Domain Of Human Kine 2e-52
2vvg_A350 Crystal Structure Of The G.Intestinalis Kinesin 2 G 8e-50
3b6v_A395 Crystal Structure Of The Motor Domain Of Human Kine 4e-49
2wbe_C373 Kinesin-5-Tubulin Complex With Amppnp Length = 373 1e-47
4a14_A344 Human Kif7, A Kinesin Involved In Hedgehog Signalli 3e-47
3gbj_A354 Crystal Structure Of The Motor Domain Of Kinesin Ki 1e-46
2xt3_A344 Human Kif7, A Kinesin Involved In Hedgehog Signalli 7e-46
1ia0_K394 Kif1a Head-Microtubule Complex Structure In Atp-For 2e-44
4aqv_C373 Model Of Human Kinesin-5 Motor Domain (3hqd) And Ma 1e-43
1i5s_A367 Crystal Structure Of The Kif1a Motor Domain Complex 1e-43
1i6i_A366 Crystal Structure Of The Kif1a Motor Domain Complex 3e-43
3bfn_A388 Crystal Structure Of The Motor Domain Of Human Kine 4e-43
1vfv_A366 Crystal Structure Of The Kif1a Motor Domain Complex 4e-43
4a28_A368 Eg5-2 Length = 368 6e-43
1ii6_A368 Crystal Structure Of The Mitotic Kinesin Eg5 In Com 6e-43
4a1z_A368 Eg5-1 Length = 368 7e-43
3hqd_A369 Human Kinesin Eg5 Motor Domain In Complex With Ampp 7e-43
1x88_A359 Human Eg5 Motor Domain Bound To Mg-Adp And Monastro 7e-43
4ap0_A370 The Mitotic Kinesin Eg5 In Complex With Mg-Adp And 7e-43
1q0b_A367 Crystal Structure Of The Motor Protein Ksp In Compl 7e-43
3zcw_A348 Eg5 - New Allosteric Binding Site Length = 348 1e-42
3lre_A355 Crystal Structure Analysis Of Human Kinesin-8 Motor 2e-42
2owm_A443 Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3 4e-42
3h4s_A386 Structure Of The Complex Of A Mitotic Kinesin With 3e-40
1sdm_A369 Crystal Structure Of Kinesin-Like Calmodulin Bindin 1e-39
3nwn_A359 Crystal Structure Of The Human Kif9 Motor Domain In 3e-39
2kin_A238 Kinesin (Monomeric) From Rattus Norvegicus Length = 5e-39
3u06_A412 Crystal Structure Of The Kinesin-14 Ncdg347d Length 6e-37
2h58_A330 Crystal Structure Of The Kifc3 Motor Domain In Comp 2e-36
1v8j_A410 The Crystal Structure Of The Minimal Functional Dom 2e-36
2ncd_A420 Ncd (Non-Claret Disjunctional) Dimer From D. Melano 3e-36
1cz7_A406 The Crystal Structure Of A Minus-End Directed Micro 3e-36
2heh_A387 Crystal Structure Of The Kif2c Motor Domain (Casp T 3e-36
3edl_D331 Kinesin13-Microtubule Ring Complex Length = 331 6e-36
1n6m_A409 Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRY 2e-35
3l1c_A383 Kinesin-14 Protein Ncd, T436s Mutant Length = 383 4e-35
2gry_A420 Crystal Structure Of The Human Kif2 Motor Domain In 1e-34
4h1g_A715 Structure Of Candida Albicans Kar3 Motor Domain Fus 9e-33
4gkr_A371 Structure Of The C-Terminal Motor Domain Of Kar3 Fr 1e-30
2rep_A376 Crystal Structure Of The Motor Domain Of Human Kine 3e-30
3t0q_A349 Motor Domain Structure Of The Kar3-Like Kinesin Fro 5e-29
1f9w_A347 Crystal Structures Of Mutants Reveal A Signalling P 1e-26
4etp_A403 C-Terminal Motor And Motor Homology Domain Of Kar3v 1e-26
1f9t_A358 Crystal Structures Of Kinesin Mutants Reveal A Sign 2e-26
3kar_A346 The Motor Domain Of Kinesin-Like Protein Kar3, A Sa 2e-26
1ry6_A360 Crystal Structure Of Internal Kinesin Motor Domain 8e-26
1f9u_A347 Crystal Structures Of Mutants Reveal A Signalling P 1e-25
1f9v_A347 Crystal Structures Of Mutants Reveal A Signalling P 2e-25
3pxn_A344 Crystal Structure Of The Drosophila Kinesin Family 2e-25
3dc4_A344 Crystal Structure Of The Drosophila Kinesin Family 7e-25
2kin_B100 Kinesin (Monomeric) From Rattus Norvegicus Length = 7e-14
3kin_B117 Kinesin (Dimeric) From Rattus Norvegicus Length = 1 3e-13
3eb5_A74 Structure Of The Ciap2 Ring Domain Length = 74 8e-06
2ecg_A75 Solution Structure Of The Ring Domain Of The Baculo 2e-05
4ic2_A74 Crystal Structure Of The Xiap Ring Domain Length = 3e-05
4ic3_A74 Crystal Structure Of The F495l Mutant Xiap Ring Dom 3e-05
3t6p_A345 Iap Antagonist-Induced Conformational Change In Cia 7e-05
4auq_B62 Structure Of Birc7-Ubch5b-Ub Complex. Length = 62 3e-04
2yhn_A79 The Idol-Ube2d Complex Mediates Sterol-Dependent De 6e-04
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore Protein Cenp-E Length = 349 Back     alignment and structure 
Iteration: 1

 Score =  250 bits (638), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 145/336 (43%), Positives = 205/336 (61%), Gaps = 25/336 (7%)
Query: 101 SISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDV 160
           +++V +R RPL+ RE   G+    Y   D  V  + + + ++ FDRVF  +  ++ VY+ 
Sbjct: 5   AVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQVDGSKSFNFDRVFHGNETTKNVYEE 64
Query: 161 AARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTPGREF 220
            A P++ +A++G NGT+FAYG T+SGKT+TM G ++  G+IP AI D+F  I+  P REF
Sbjct: 65  IAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPDREF 124
Query: 221 LLRVSYLEIYNEVINDLLDPTGQN--LRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAG 277
           LLRVSY+EIYNE I DLL  T +   L +RED  +  YV  + EEVV +   AL +I  G
Sbjct: 125 LLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNVYVADLTEEVVYTSEMALKWITKG 184
Query: 278 EEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGD--EYDGVIFSQLVRWFFLSVKTAYLFQ 335
           E+ RH G    N  SSRSHTIF +++ES + G+    +G            SVK ++L  
Sbjct: 185 EKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEG------------SVKVSHLNL 232
Query: 336 L-----YESSKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGK-ASHVPYRDSKLTRLLQ 389
           +       +++T   G+R KEG  IN+SL  LG VI KLS+G+    + YRDSKLTR+LQ
Sbjct: 233 VDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQ 292
Query: 390 SSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAK 425
           +SL G+    +ICT+TP   S +ET   L+FAS AK
Sbjct: 293 NSLGGNAKTRIICTITPV--SFDETLTALQFASTAK 326
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker Length = 349 Back     alignment and structure
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker, Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em Map Of Doublecortin-Microtubules Decorated With Kinesin Length = 340 Back     alignment and structure
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain Length = 325 Back     alignment and structure
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1 Motor Domain Dimer Length = 365 Back     alignment and structure
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase Mechanism And Interactions With Microtubules Length = 355 Back     alignment and structure
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3b In Complex With Adp Length = 372 Back     alignment and structure
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a Motor Domain Length = 350 Back     alignment and structure
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3c In Complex With Adp Length = 395 Back     alignment and structure
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp Length = 373 Back     alignment and structure
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 Back     alignment and structure
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b Bound With Adp Length = 354 Back     alignment and structure
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 Back     alignment and structure
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form Length = 394 Back     alignment and structure
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain In The Ampppnp State. Length = 373 Back     alignment and structure
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Adp Length = 367 Back     alignment and structure
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppcp Length = 366 Back     alignment and structure
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 22 Length = 388 Back     alignment and structure
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppnp Length = 366 Back     alignment and structure
>pdb|4A28|A Chain A, Eg5-2 Length = 368 Back     alignment and structure
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex With Mg-Adp. Length = 368 Back     alignment and structure
>pdb|4A1Z|A Chain A, Eg5-1 Length = 368 Back     alignment and structure
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And Mg2+ Length = 369 Back     alignment and structure
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol Length = 359 Back     alignment and structure
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And Ispinesib Length = 370 Back     alignment and structure
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With Adp And Monastrol Length = 367 Back     alignment and structure
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site Length = 348 Back     alignment and structure
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain Length = 355 Back     alignment and structure
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3) Length = 443 Back     alignment and structure
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its Calcium Binding Regulator Length = 386 Back     alignment and structure
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding Protein Length = 369 Back     alignment and structure
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In Complex With Adp Length = 359 Back     alignment and structure
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus Length = 238 Back     alignment and structure
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d Length = 412 Back     alignment and structure
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex With Adp Length = 330 Back     alignment and structure
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of The Microtubule Destabilizer Kif2c Complexed With Mg-adp Length = 410 Back     alignment and structure
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster Length = 420 Back     alignment and structure
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule Motor Protein Ncd Reveals Variable Dimer Conformations Length = 406 Back     alignment and structure
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target) Length = 387 Back     alignment and structure
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex Length = 331 Back     alignment and structure
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL Structure Of The Kinesin Motor Protein, Ncd Length = 409 Back     alignment and structure
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant Length = 383 Back     alignment and structure
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In Complex With Adp Length = 420 Back     alignment and structure
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To Maltose- Binding Protein Length = 715 Back     alignment and structure
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From Candida Glabrata Length = 371 Back     alignment and structure
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member C1 Length = 376 Back     alignment and structure
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From Ashbya Gossypii Length = 349 Back     alignment and structure
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 Back     alignment and structure
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1 Fused To A Synthetic Heterodimeric Coiled Coil Length = 403 Back     alignment and structure
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling Pathway For Activation Of The Motor Atpase Length = 358 Back     alignment and structure
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A Saccharomyces Cerevisiae Kinesin-Related Protein Length = 346 Back     alignment and structure
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain Length = 360 Back     alignment and structure
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 Back     alignment and structure
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 Back     alignment and structure
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Kin10NOD IN Complex With Divalent Manganese And Adp Length = 344 Back     alignment and structure
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Nod In Complex With Adp Length = 344 Back     alignment and structure
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus Length = 100 Back     alignment and structure
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus Length = 117 Back     alignment and structure
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain Length = 74 Back     alignment and structure
>pdb|2ECG|A Chain A, Solution Structure Of The Ring Domain Of The Baculoviral Iap Repeat-Containing Protein 4 From Homo Sapiens Length = 75 Back     alignment and structure
>pdb|4IC2|A Chain A, Crystal Structure Of The Xiap Ring Domain Length = 74 Back     alignment and structure
>pdb|4IC3|A Chain A, Crystal Structure Of The F495l Mutant Xiap Ring Domain Length = 74 Back     alignment and structure
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1 Promotes E3 Ligase Activation Via Dimerization Length = 345 Back     alignment and structure
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex. Length = 62 Back     alignment and structure
>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation Of The Ldl Receptor Length = 79 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1105
1t5c_A349 CENP-E protein, centromeric protein E; kinesin mot 1e-154
2y65_A365 Kinesin, kinesin heavy chain; motor protein; HET: 1e-141
2nr8_A358 Kinesin-like protein KIF9; motor domain, ADP, stru 1e-136
1bg2_A325 Kinesin; motor protein, ATPase, microtubule associ 1e-130
1goj_A355 Kinesin, kinesin heavy chain; motor protein, ATPas 1e-122
3b6u_A372 Kinesin-like protein KIF3B; structural genomics co 1e-122
3bfn_A388 Kinesin-like protein KIF22; limited proteolysis, s 1e-118
4a14_A344 Kinesin, kinesin-like protein KIF7; motor protein, 1e-118
2vvg_A350 Kinesin-2; motor protein, nucleotide-binding, micr 1e-116
3cob_A369 Kinesin heavy chain-like protein; motor, switch II 1e-112
3lre_A355 Kinesin-like protein KIF18A; motor protein, nucleo 1e-112
1x88_A359 Kinesin-like protein KIF11; switch II, motor domai 1e-111
2wbe_C373 Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit 1e-111
3gbj_A354 KIF13B protein; kinesin, motor domain, ADP, struct 1e-110
2zfi_A366 Kinesin-like protein KIF1A, kinesin heavy chain is 1e-109
2h58_A330 Kinesin-like protein KIFC3 variant; motor domain, 1e-106
2owm_A443 Nckin3-434, related to kinesin-like protein KIF1C; 1e-105
3dc4_A344 Kinesin-like protein NOD; catalytic domain, ATPase 1e-105
1ry6_A360 Internal kinesin; kinesin motor domain, nucleotide 1e-104
1f9v_A347 Kinesin-like protein KAR3; kinesin-related protein 1e-103
3u06_A412 Protein claret segregational; motor domain, stalk 1e-101
2heh_A387 KIF2C protein; kinesin, motor domain, ADP, structu 2e-99
4etp_A403 Kinesin-like protein KAR3; kinesin motor protein, 4e-99
3t0q_A349 AGR253WP; kinesin, alpha and beta proteins, P-loop 4e-99
1v8k_A410 Kinesin-like protein KIF2C; microtubule destabiliz 1e-98
2rep_A376 Kinesin-like protein KIFC1; structural genomics co 2e-96
3kin_B117 Kinesin heavy chain; motor protein, cytoskeleton; 4e-42
2kin_B100 Kinesin; motor protein, cytoskeleton; HET: ADP; 2. 2e-40
2yho_A79 E3 ubiquitin-protein ligase mylip; ligase, E2 liga 1e-20
2ecg_A75 Baculoviral IAP repeat-containing protein 4; BIRC4 3e-20
2ea5_A68 Cell growth regulator with ring finger domain prot 3e-20
3t6p_A345 Baculoviral IAP repeat-containing protein 2; ring, 4e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
2vje_B63 MDM4 protein; proto-oncogene, phosphorylation, alt 5e-14
2vje_A64 E3 ubiquitin-protein ligase MDM2; proto-oncogene, 6e-13
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-12
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-08
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-07
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-07
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-04
2d8t_A71 Dactylidin, ring finger protein 146; RNF146, ring 7e-08
2y1n_A389 E3 ubiquitin-protein ligase; ligase-transferase co 7e-07
1bor_A56 Transcription factor PML; proto-oncogene, nuclear 5e-06
2ecy_A66 TNF receptor-associated factor 3; metal binding pr 1e-05
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 1e-05
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 4e-05
3hct_A118 TNF receptor-associated factor 6; cross-brace, bet 2e-05
2csy_A81 Zinc finger protein 183-like 1; ring finger protei 2e-05
1chc_A68 Equine herpes virus-1 ring domain; viral protein; 5e-05
3hcs_A170 TNF receptor-associated factor 6; cross-brace, bet 9e-05
4epo_C149 E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 9e-05
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 9e-05
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 1e-04
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 2e-04
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 3e-04
2ecm_A55 Ring finger and CHY zinc finger domain- containing 1e-04
3k1f_M197 Transcription initiation factor IIB; RNA polymeras 1e-04
3k1f_M 197 Transcription initiation factor IIB; RNA polymeras 6e-04
2ea6_A69 Ring finger protein 4; RNF4, RES4-26, ring domain, 2e-04
2ecn_A70 Ring finger protein 141; RNF141, ring domain, zinc 2e-04
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 2e-04
2djb_A72 Polycomb group ring finger protein 6; PCGF6, ring 3e-04
3knv_A141 TNF receptor-associated factor 2; cross-brace, alt 3e-04
3l11_A115 E3 ubiquitin-protein ligase RNF168; E3 ligase, rin 3e-04
2kiz_A69 E3 ubiquitin-protein ligase arkadia; ring-H2 finge 7e-04
2xeu_A64 Ring finger protein 4; transcription, zinc-finger, 7e-04
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} Length = 349 Back     alignment and structure
 Score =  462 bits (1191), Expect = e-154
 Identities = 147/360 (40%), Positives = 210/360 (58%), Gaps = 23/360 (6%)

Query: 98  SGDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATAYAFDRVFGPHANSQEV 157
              +++V +R RPL+ RE   G+    Y   D  V  + + + ++ FDRVF  +  ++ V
Sbjct: 2   EEGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQVDGSKSFNFDRVFHGNETTKNV 61

Query: 158 YDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTPG 217
           Y+  A P++ +A++G NGT+FAYG T+SGKT+TM G ++  G+IP AI D+F  I+  P 
Sbjct: 62  YEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPD 121

Query: 218 REFLLRVSYLEIYNEVINDLLDPT--GQNLRVREDA-QGTYVEGIKEEVVLSPGHALSFI 274
           REFLLRVSY+EIYNE I DLL  T   + L +RED  +  YV  + EEVV +   AL +I
Sbjct: 122 REFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNVYVADLTEEVVYTSEMALKWI 181

Query: 275 AAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDG---VIFSQLVRWFFLSVKTA 331
             GE+ RH G    N  SSRSHTIF +++ES + G+  +    V  S L           
Sbjct: 182 TKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHL----------- 230

Query: 332 YLFQLYES---SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGK-ASHVPYRDSKLTRL 387
            L  L  S   ++T   G+R KEG  IN+SL  LG VI KLS+G+    + YRDSKLTR+
Sbjct: 231 NLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRI 290

Query: 388 LQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQ 447
           LQ+SL G+    +ICT+TP   S +ET   L+FAS AK ++     N++  ++     + 
Sbjct: 291 LQNSLGGNAKTRIICTITPV--SFDETLTALQFASTAKYMKNTPYVNEVSTDELEHHHHH 348
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Length = 365 Back     alignment and structure
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Length = 325 Back     alignment and structure
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Length = 355 Back     alignment and structure
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Length = 372 Back     alignment and structure
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Length = 388 Back     alignment and structure
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A* Length = 344 Back     alignment and structure
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} Length = 350 Back     alignment and structure
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* Length = 369 Back     alignment and structure
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} Length = 355 Back     alignment and structure
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Length = 359 Back     alignment and structure
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Length = 373 Back     alignment and structure
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} Length = 354 Back     alignment and structure
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* Length = 366 Back     alignment and structure
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} Length = 330 Back     alignment and structure
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} Length = 443 Back     alignment and structure
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Length = 344 Back     alignment and structure
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Length = 360 Back     alignment and structure
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* Length = 347 Back     alignment and structure
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Length = 412 Back     alignment and structure
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Length = 387 Back     alignment and structure
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Length = 403 Back     alignment and structure
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} Length = 349 Back     alignment and structure
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Length = 410 Back     alignment and structure
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} Length = 376 Back     alignment and structure
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 Length = 117 Back     alignment and structure
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 Length = 100 Back     alignment and structure
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Length = 79 Back     alignment and structure
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75 Back     alignment and structure
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68 Back     alignment and structure
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A Length = 345 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Length = 63 Back     alignment and structure
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Length = 64 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71 Back     alignment and structure
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389 Back     alignment and structure
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56 Back     alignment and structure
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118 Back     alignment and structure
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81 Back     alignment and structure
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68 Back     alignment and structure
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170 Back     alignment and structure
>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55 Back     alignment and structure
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} Length = 197 Back     alignment and structure
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} Length = 197 Back     alignment and structure
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69 Back     alignment and structure
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 Back     alignment and structure
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72 Back     alignment and structure
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141 Back     alignment and structure
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115 Back     alignment and structure
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69 Back     alignment and structure
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1105
2y65_A365 Kinesin, kinesin heavy chain; motor protein; HET: 100.0
3cob_A369 Kinesin heavy chain-like protein; motor, switch II 100.0
3b6u_A372 Kinesin-like protein KIF3B; structural genomics co 100.0
3bfn_A388 Kinesin-like protein KIF22; limited proteolysis, s 100.0
2vvg_A350 Kinesin-2; motor protein, nucleotide-binding, micr 100.0
1t5c_A349 CENP-E protein, centromeric protein E; kinesin mot 100.0
1goj_A355 Kinesin, kinesin heavy chain; motor protein, ATPas 100.0
2owm_A443 Nckin3-434, related to kinesin-like protein KIF1C; 100.0
2zfi_A366 Kinesin-like protein KIF1A, kinesin heavy chain is 100.0
3lre_A355 Kinesin-like protein KIF18A; motor protein, nucleo 100.0
1bg2_A325 Kinesin; motor protein, ATPase, microtubule associ 100.0
1x88_A359 Kinesin-like protein KIF11; switch II, motor domai 100.0
4a14_A344 Kinesin, kinesin-like protein KIF7; motor protein, 100.0
2wbe_C373 Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit 100.0
3nwn_A359 Kinesin-like protein KIF9; motor domain, ADP, stru 100.0
3gbj_A354 KIF13B protein; kinesin, motor domain, ADP, struct 100.0
2nr8_A358 Kinesin-like protein KIF9; motor domain, ADP, stru 100.0
2h58_A330 Kinesin-like protein KIFC3 variant; motor domain, 100.0
3u06_A412 Protein claret segregational; motor domain, stalk 100.0
2rep_A376 Kinesin-like protein KIFC1; structural genomics co 100.0
3t0q_A349 AGR253WP; kinesin, alpha and beta proteins, P-loop 100.0
2heh_A387 KIF2C protein; kinesin, motor domain, ADP, structu 100.0
1ry6_A360 Internal kinesin; kinesin motor domain, nucleotide 100.0
1f9v_A347 Kinesin-like protein KAR3; kinesin-related protein 100.0
1v8k_A410 Kinesin-like protein KIF2C; microtubule destabiliz 100.0
4etp_A403 Kinesin-like protein KAR3; kinesin motor protein, 100.0
3dc4_A344 Kinesin-like protein NOD; catalytic domain, ATPase 100.0
4h1g_A715 Maltose binding protein-cakar3 motor domain fusio; 100.0
2kin_B100 Kinesin; motor protein, cytoskeleton; HET: ADP; 2. 99.96
3kin_B117 Kinesin heavy chain; motor protein, cytoskeleton; 99.95
2o0a_A298 S.cerevisiae chromosome XVI reading frame ORF YPL2 99.9
2ea5_A68 Cell growth regulator with ring finger domain prot 99.2
2yho_A79 E3 ubiquitin-protein ligase mylip; ligase, E2 liga 99.15
2vje_B63 MDM4 protein; proto-oncogene, phosphorylation, alt 99.08
4ic3_A74 E3 ubiquitin-protein ligase XIAP; ring domain, zin 99.06
2ecg_A75 Baculoviral IAP repeat-containing protein 4; BIRC4 99.02
2vje_A64 E3 ubiquitin-protein ligase MDM2; proto-oncogene, 98.99
3t6p_A345 Baculoviral IAP repeat-containing protein 2; ring, 98.73
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 98.37
4ayc_A138 E3 ubiquitin-protein ligase RNF8; DNA damage, K63 98.29
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 98.29
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 98.28
2ecn_A70 Ring finger protein 141; RNF141, ring domain, zinc 98.17
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 98.17
1chc_A68 Equine herpes virus-1 ring domain; viral protein; 98.16
2d8t_A71 Dactylidin, ring finger protein 146; RNF146, ring 98.15
2ysl_A73 Tripartite motif-containing protein 31; ring-type 98.12
2csy_A81 Zinc finger protein 183-like 1; ring finger protei 98.11
2xeu_A64 Ring finger protein 4; transcription, zinc-finger, 98.05
2y1n_A389 E3 ubiquitin-protein ligase; ligase-transferase co 98.04
2ea6_A69 Ring finger protein 4; RNF4, RES4-26, ring domain, 98.02
2ecm_A55 Ring finger and CHY zinc finger domain- containing 98.02
2egp_A79 Tripartite motif-containing protein 34; ZF-C3HC4 d 97.99
3ng2_A71 RNF4, snurf, ring finger protein 4; ring domain, E 97.99
2ct2_A88 Tripartite motif protein 32; zinc-finger protein H 97.98
2ecw_A85 Tripartite motif-containing protein 30; metal bind 97.97
2djb_A72 Polycomb group ring finger protein 6; PCGF6, ring 97.95
2kiz_A69 E3 ubiquitin-protein ligase arkadia; ring-H2 finge 97.93
1bor_A56 Transcription factor PML; proto-oncogene, nuclear 97.93
3fl2_A124 E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA 97.92
2ecv_A85 Tripartite motif-containing protein 5; metal bindi 97.92
1e4u_A78 Transcriptional repressor NOT4; gene regulation, t 97.91
1iym_A55 EL5; ring-H2 finger, ubiquitin ligase, DNA binding 97.89
2ecy_A66 TNF receptor-associated factor 3; metal binding pr 97.88
1jm7_A112 BRCA1, breast cancer type 1 susceptibility protein 97.87
2l0b_A91 E3 ubiquitin-protein ligase praja-1; zinc finger, 97.86
2yur_A74 Retinoblastoma-binding protein 6; P53-associated c 97.85
2ep4_A74 Ring finger protein 24; zinc binding, ubiquitin, E 97.84
2ect_A78 Ring finger protein 126; metal binding protein, st 97.82
1x4j_A75 Ring finger protein 38; structural genomics, NPPSF 97.81
3ztg_A92 E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR 97.78
1g25_A65 CDK-activating kinase assembly factor MAT1; ring f 97.77
3l11_A115 E3 ubiquitin-protein ligase RNF168; E3 ligase, rin 97.73
3lrq_A100 E3 ubiquitin-protein ligase TRIM37; structural gen 97.73
1z6u_A150 NP95-like ring finger protein isoform B; structura 97.71
1t1h_A78 Gspef-atpub14, armadillo repeat containing protein 97.68
2y43_A99 E3 ubiquitin-protein ligase RAD18; DNA repair, met 97.66
2ckl_B165 Ubiquitin ligase protein RING2; BMI1, RING1B, poly 97.65
2ckl_A108 Polycomb group ring finger protein 4; BMI1, RING1B 97.65
1jm7_B117 BARD1, BRCA1-associated ring domain protein 1; rin 97.6
2ysj_A63 Tripartite motif-containing protein 31; ring-type 97.58
2ecj_A58 Tripartite motif-containing protein 39; TRIM39, ri 97.57
3hct_A118 TNF receptor-associated factor 6; cross-brace, bet 97.49
1v87_A114 Deltex protein 2; ring-H2 domain, zinc-binding dom 97.43
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 97.41
1wt6_A81 Myotonin-protein kinase; coiled-coil, kinase activ 97.36
1rmd_A116 RAG1; V(D)J recombination, antibody, MAD, ring fin 97.32
2ecl_A81 Ring-box protein 2; RNF7, ring domian, zinc-bindin 97.22
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 97.21
4ap4_A133 E3 ubiquitin ligase RNF4; ligase-signalling protei 97.18
2kre_A100 Ubiquitin conjugation factor E4 B; U-box domain, E 97.13
3knv_A141 TNF receptor-associated factor 2; cross-brace, alt 97.11
1wgm_A98 Ubiquitin conjugation factor E4A; ubiquitinating e 97.08
2kr4_A85 Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri 97.08
4ap4_A133 E3 ubiquitin ligase RNF4; ligase-signalling protei 97.07
2f42_A179 STIP1 homology and U-box containing protein 1; cha 97.02
3dpl_R106 Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST 96.8
3hcs_A170 TNF receptor-associated factor 6; cross-brace, bet 96.8
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 96.76
4a0k_B117 E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi 96.41
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 96.37
2yu4_A94 E3 SUMO-protein ligase NSE2; SP-ring domain, struc 96.21
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 96.14
1wim_A94 KIAA0161 protein; ring finger domain, UBCM4-intera 95.86
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 95.75
2d8s_A80 Cellular modulator of immune recognition; C-MIR, m 95.68
3htk_C267 E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL- 95.6
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 95.51
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 95.44
3vk6_A101 E3 ubiquitin-protein ligase hakai; HYB, phosphotyr 95.35
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 94.99
2efr_A155 General control protein GCN4 and tropomyosin 1 Al; 94.91
3o0z_A168 RHO-associated protein kinase 1; coiled-coil, tran 94.54
2bay_A61 PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l 93.1
3ec2_A180 DNA replication protein DNAC; helicase loader, rep 92.56
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 92.25
2w58_A202 DNAI, primosome component (helicase loader); ATP-b 91.33
3o0z_A168 RHO-associated protein kinase 1; coiled-coil, tran 91.18
2jee_A81 YIIU; FTSZ, septum, coiled-coil, cell division, ce 90.85
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 90.47
2efr_A155 General control protein GCN4 and tropomyosin 1 Al; 90.45
2qgz_A308 Helicase loader, putative primosome component; str 90.3
3s4r_A93 Vimentin; alpha-helix, cytoskeleton, intermediate 88.78
2ocy_A154 RAB guanine nucleotide exchange factor SEC2; RAB, 88.69
3nmd_A72 CGMP dependent protein kinase; leucine zipper, coi 87.75
1vyx_A60 ORF K3, K3RING; zinc-binding protein, ring domain, 87.73
3hnw_A138 Uncharacterized protein; coiled-coil, structural g 87.33
3hnw_A138 Uncharacterized protein; coiled-coil, structural g 87.3
2v4h_A110 NF-kappa-B essential modulator; transcription, met 86.81
4etp_B333 Spindle POLE BODY-associated protein VIK1; kinesin 86.41
3t15_A293 Ribulose bisphosphate carboxylase/oxygenase activ 85.8
3k1l_B381 Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A 85.5
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 85.24
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 85.02
3s9g_A104 Protein hexim1; cyclin T-binding domain (TBD), cyc 84.25
1x79_B112 RAB GTPase binding effector protein 1; rabaptin5, 84.14
2w83_C77 C-JUN-amino-terminal kinase-interacting protein 4; 83.26
2v66_B111 Nuclear distribution protein NUDE-like 1; structur 82.92
2bjv_A265 PSP operon transcriptional activator; AAA, transcr 82.53
4emc_A190 Monopolin complex subunit CSM1; RWD domain, kineto 81.82
2eqb_B97 RAB guanine nucleotide exchange factor SEC2; coile 81.8
3ghg_A562 Fibrinogen alpha chain; triple-stranded coiled coi 81.27
3a7p_A152 Autophagy protein 16; coiled-coil, coiled coil, cy 80.82
1jbk_A195 CLPB protein; beta barrel, chaperone; 1.80A {Esche 80.81
4b4t_M434 26S protease regulatory subunit 6A; hydrolase, AAA 80.73
1x79_B112 RAB GTPase binding effector protein 1; rabaptin5, 80.26
3h4m_A285 Proteasome-activating nucleotidase; ATPase, PAN, A 80.17
2r62_A268 Cell division protease FTSH homolog; ATPase domain 80.15
2v66_B111 Nuclear distribution protein NUDE-like 1; structur 80.14
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Back     alignment and structure
Probab=100.00  E-value=7.8e-86  Score=754.39  Aligned_cols=342  Identities=39%  Similarity=0.609  Sum_probs=290.3

Q ss_pred             CCCCCEEEEEEeCCCChhhhccCCeEEEeec----CCEEEecCCCCCcceeeceecCCCCChhHHHhhhhHHHHHHHhcC
Q 001297           97 RSGDSISVTIRFRPLSEREFQRGDEIAWYAD----GDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEG  172 (1105)
Q Consensus        97 ~~~~~I~V~vRvRP~~~~E~~~~~~~~~~~~----~~~i~~~~~~~~~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G  172 (1105)
                      ...++|+|+|||||+++.|...+...++..+    ...+...    .+.|.||+||+++++|++||+.++.|+|+++|+|
T Consensus         8 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~i~~~----~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G   83 (365)
T 2y65_A            8 PAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIA----GKVYLFDKVFKPNASQEKVYNEAAKSIVTDVLAG   83 (365)
T ss_dssp             CCEEECEEEEEECCCCHHHHHTTCCBCEECCSSSTTCEEEET----TEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTT
T ss_pred             CCCCCeEEEEEcCcCChhHhccCCceEEEeCCCCCCcEEEEC----CEEEeCceEecCCCCHHHHHHHhhhhHHHHHhCC
Confidence            3578999999999999999887766554433    2344332    4689999999999999999999999999999999


Q ss_pred             CCeEEEEeccCCCCCccccCCCC---CCCCchhHHHHHHHHhhccC-CCceEEEEEeeeeeecceeeeccCCCCCcccee
Q 001297          173 VNGTVFAYGVTSSGKTHTMHGDQ---NSPGIIPLAIKDVFSIIQDT-PGREFLLRVSYLEIYNEVINDLLDPTGQNLRVR  248 (1105)
Q Consensus       173 ~n~tIfaYGqTGSGKTyTm~G~~---~~~GIipra~~~LF~~i~~~-~~~~~~v~vS~lEIYnE~i~DLL~p~~~~l~ir  248 (1105)
                      ||+||||||||||||||||+|+.   ..+|||||++++||+.+... .+..|.|+|||+|||||+|+|||++....+.|+
T Consensus        84 ~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~l~i~  163 (365)
T 2y65_A           84 YNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVH  163 (365)
T ss_dssp             CCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEEEETTEEEETTCTTCCSBCEE
T ss_pred             CceEEEeecCCCCCCceEEecCCCCcccCChHHHHHHHHHHHHHhccCCceEEEEEEEEEEECCeeeecccCCcCCceEE
Confidence            99999999999999999999965   45699999999999999754 467999999999999999999999988899999


Q ss_pred             ecC-CCcEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCCCCcceEeeeeehhhhhc
Q 001297          249 EDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLVRWFFLS  327 (1105)
Q Consensus       249 ed~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~s~l~~~~~~~  327 (1105)
                      +++ .|+||.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|.+.+...  .....++|+      
T Consensus       164 e~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~--~~~~~skL~------  235 (365)
T 2y65_A          164 EDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLEN--QKKLSGKLY------  235 (365)
T ss_dssp             ECSSSCEEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETTT--CCEEEEEEE------
T ss_pred             ECCCCCEEecCCEEEecCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecCC--CCEeEEEEE------
Confidence            998 57899999999999999999999999999999999999999999999999999876433  234567777      


Q ss_pred             cccccccccccccc---cccccccccccchhhhcHHHHHHHHHHhhcCCCCcccCCCCccchhcccCCCCCccceeEeee
Q 001297          328 VKTAYLFQLYESSK---TETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTV  404 (1105)
Q Consensus       328 ~~~~~lvDLa~s~k---~~~~g~r~~E~~~INkSL~aLg~VI~aLs~~k~~hvPyRdSkLTrLLqdsLgGnskt~mI~~I  404 (1105)
                           ||||||+++   +++.|.|++|+.+||+||++||+||.+|++++..|||||||||||||||+||||++|+|||||
T Consensus       236 -----lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~i  310 (365)
T 2y65_A          236 -----LVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICC  310 (365)
T ss_dssp             -----EEECCCCCC----------------CCHHHHHHHHHHHHHHHCCCSCCCGGGCHHHHHTGGGTTSSSEEEEEEEE
T ss_pred             -----EEECCCCCcchhcCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCHHHHHHHhhcCCCccEEEEEEe
Confidence                 999999875   677899999999999999999999999999877899999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHhcccccccccccccCHHHHHHHHHHHHHHHHH
Q 001297          405 TPASSSMEETHNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQREISSLKE  455 (1105)
Q Consensus       405 sP~~~~~~ETlsTL~fA~rak~I~~~~~~n~~~~~~~~i~~~~~ei~~Lk~  455 (1105)
                      ||+..+++||++||+||+|||+|+|.|.+|+..+.+.++++|++|+..|+.
T Consensus       311 sP~~~~~~ETl~TL~fA~rak~I~n~~~~n~~~~~~~~~~~~~~e~~~~~~  361 (365)
T 2y65_A          311 SPASFNESETKSTLDFGRRAKTVKNVVCVNEELTAEEWKRRYEKEKEKNAR  361 (365)
T ss_dssp             CCBGGGHHHHHHHHHHHHHHTTCEEECCCEEECCSHHHHHC----------
T ss_pred             cCccCCHHHHHHHHHHHHHHhcccCcceeCCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998888888889888876653
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* Back     alignment and structure
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Back     alignment and structure
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Back     alignment and structure
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} Back     alignment and structure
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} Back     alignment and structure
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Back     alignment and structure
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} Back     alignment and structure
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* Back     alignment and structure
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0 Back     alignment and structure
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Back     alignment and structure
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Back     alignment and structure
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A* Back     alignment and structure
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Back     alignment and structure
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} Back     alignment and structure
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9 Back     alignment and structure
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} Back     alignment and structure
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Back     alignment and structure
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} Back     alignment and structure
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} Back     alignment and structure
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Back     alignment and structure
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Back     alignment and structure
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* Back     alignment and structure
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Back     alignment and structure
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Back     alignment and structure
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli} Back     alignment and structure
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 Back     alignment and structure
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 Back     alignment and structure
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Back     alignment and structure
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Back     alignment and structure
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A Back     alignment and structure
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Back     alignment and structure
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Back     alignment and structure
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Back     alignment and structure
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Back     alignment and structure
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Back     alignment and structure
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Back     alignment and structure
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Back     alignment and structure
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Back     alignment and structure
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Back     alignment and structure
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Back     alignment and structure
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Back     alignment and structure
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Back     alignment and structure
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Back     alignment and structure
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens} Back     alignment and structure
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Back     alignment and structure
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Back     alignment and structure
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Back     alignment and structure
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Back     alignment and structure
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Back     alignment and structure
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Back     alignment and structure
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Back     alignment and structure
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens} Back     alignment and structure
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Back     alignment and structure
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Back     alignment and structure
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Back     alignment and structure
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Back     alignment and structure
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Back     alignment and structure
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Back     alignment and structure
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Back     alignment and structure
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Back     alignment and structure
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Back     alignment and structure
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Back     alignment and structure
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Back     alignment and structure
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Back     alignment and structure
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Back     alignment and structure
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Back     alignment and structure
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} Back     alignment and structure
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A Back     alignment and structure
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Back     alignment and structure
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens} Back     alignment and structure
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3 Back     alignment and structure
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens} Back     alignment and structure
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens} Back     alignment and structure
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus} Back     alignment and structure
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Back     alignment and structure
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A Back     alignment and structure
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2 Back     alignment and structure
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens} Back     alignment and structure
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens} Back     alignment and structure
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* Back     alignment and structure
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A Back     alignment and structure
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Back     alignment and structure
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Back     alignment and structure
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2 Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Back     alignment and structure
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* Back     alignment and structure
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1105
d1goja_354 c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5 2e-75
d1bg2a_323 c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId 2e-74
d2zfia1349 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), 4e-68
d1ry6a_330 c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodiu 9e-68
d1x88a1345 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), 5e-67
d1v8ka_362 c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c 4e-63
d1sdma_364 c.37.1.9 (A:) Kinesin heavy chain-like protein {Po 4e-62
d1f9va_342 c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun 2e-60
d2ncda_368 c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun 4e-58
d1fbva479 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta 7e-10
d1bora_56 g.44.1.1 (A:) Acute promyelocytic leukaemia proto- 6e-08
d1chca_68 g.44.1.1 (A:) Immediate early protein, IEEHV {Equi 9e-07
d1rmda286 g.44.1.1 (A:1-86) V(D)J recombination activating p 6e-05
d1jm7a_103 g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie 2e-04
d1ur6b_52 g.44.1.1 (B:) Not-4 N-terminal RING finger domain 4e-04
d1iyma_55 g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati 0.002
d1vyxa_60 g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do 0.003
d1g25a_65 g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi 0.004
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Length = 354 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Neurospora crassa [TaxId: 5141]

 Score =  251 bits (641), Expect = 2e-75
 Identities = 131/366 (35%), Positives = 187/366 (51%), Gaps = 21/366 (5%)

Query: 98  SGDSISVTIRFRPLSEREFQRGDEIAWYADG-DKIVRNEYNPATAYAFDRVFGPHANSQE 156
           S +SI V  RFRP +  E + G +      G D    +      ++ FDRVF       +
Sbjct: 3   SANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQGSFTFDRVFDMSCKQSD 62

Query: 157 VYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH----GDQNSPGIIPLAIKDVF-SI 211
           ++D + +P V   + G NGTVFAYG T +GK++TM      D +  G+IP  ++ +F SI
Sbjct: 63  IFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSI 122

Query: 212 IQDTPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDA-QGTYVEGIKEEVVLSPGHA 270
           +      E+ +RVSY+EIY E I DLL P   NL V E+  +G YV+G+ E  V S    
Sbjct: 123 LSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRGVYVKGLLEIYVSSVQEV 182

Query: 271 LSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLVRWFFLSVKT 330
              +  G   R V + N N  SSRSH+IF + I   +            LV         
Sbjct: 183 YEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVD-------- 234

Query: 331 AYLFQLYESSKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQS 390
             L    +  KT  +G   +E   INKSL  LG VI  L++GK+SHVPYRDSKLTR+LQ 
Sbjct: 235 --LAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQE 292

Query: 391 SLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQREI 450
           SL G+   +LI   +P+S +  ET +TL+F  RAK ++  A  N  +    L    ++ +
Sbjct: 293 SLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPAEL----KQML 348

Query: 451 SSLKEE 456
           +  K +
Sbjct: 349 AKAKTQ 354
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} Length = 323 Back     information, alignment and structure
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Length = 349 Back     information, alignment and structure
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 330 Back     information, alignment and structure
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Length = 345 Back     information, alignment and structure
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Length = 362 Back     information, alignment and structure
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 364 Back     information, alignment and structure
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Length = 342 Back     information, alignment and structure
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 368 Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56 Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68 Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86 Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103 Back     information, alignment and structure
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52 Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55 Back     information, alignment and structure
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60 Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1105
d1sdma_364 Kinesin heavy chain-like protein {Potato (Solanum 100.0
d1goja_354 Kinesin {Neurospora crassa [TaxId: 5141]} 100.0
d1v8ka_362 Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090 100.0
d2zfia1349 Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090 100.0
d2ncda_368 Kinesin motor Ncd (non-claret disjunctional) {Frui 100.0
d1bg2a_323 Kinesin {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1x88a1345 Kinesin {Human (Homo sapiens), mitotic kinesin eg5 100.0
d1ry6a_330 Kinesin {Malaria parasite (Plasmodium falciparum) 100.0
d1f9va_342 Kinesin motor Ncd (non-claret disjunctional) {Bake 100.0
d1fbva479 CBL {Human (Homo sapiens) [TaxId: 9606]} 98.4
d1bora_56 Acute promyelocytic leukaemia proto-oncoprotein PM 98.23
d1chca_68 Immediate early protein, IEEHV {Equine herpesvirus 98.19
d1jm7a_103 brca1 RING domain {Human (Homo sapiens) [TaxId: 96 98.03
d1rmda286 V(D)J recombination activating protein 1 (RAG1), d 98.01
d1g25a_65 TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 97.87
d1jm7b_97 bard1 RING domain {Human (Homo sapiens) [TaxId: 96 97.8
d1iyma_55 EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 97.76
d1ur6b_52 Not-4 N-terminal RING finger domain {Human (Homo s 97.74
d2baya156 Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac 97.46
d2c2la280 STIP1 homology and U box-containing protein 1, STU 97.46
d1v87a_114 Deltex protein 2 RING-H2 domain {Mouse (Mus muscul 97.33
d1t1ha_78 E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi 97.26
d3dplr188 RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase 97.1
d1wgma_98 Ubiquitin conjugation factor E4A {Human (Homo sapi 96.84
d1vyxa_60 IE1B protein (ORF K3), N-terminal domain {Kaposi's 96.67
d1wima_94 UbcM4-interacting protein 4 (KIAA0161) {Human (Hom 95.2
d1l8qa2213 Chromosomal replication initiation factor DnaA {Aq 93.79
d1r7ra3265 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 89.51
d1w5sa2287 CDC6-like protein APE0152, N-terminal domain {Aero 88.87
d1gvnb_273 Plasmid maintenance system epsilon/zeta, toxin zet 82.0
d1fnna2276 CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T 81.93
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin heavy chain-like protein
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=100.00  E-value=5.1e-77  Score=684.06  Aligned_cols=341  Identities=32%  Similarity=0.510  Sum_probs=290.5

Q ss_pred             CEEEEEEeCCCChhhhccCCeEEE-eecCCEEEe-cCCCCCcceeeceecCCCCChhHHHhhhhHHHHHHHhcCCCeEEE
Q 001297          101 SISVTIRFRPLSEREFQRGDEIAW-YADGDKIVR-NEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVF  178 (1105)
Q Consensus       101 ~I~V~vRvRP~~~~E~~~~~~~~~-~~~~~~i~~-~~~~~~~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n~tIf  178 (1105)
                      .|+|+|||||+.+.|...+...++ ..++..+.. ......+.|.||+||+++++|++||+.+ .|+|+++++|||+|||
T Consensus         1 rIkV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~v-~~lv~~~l~G~n~~i~   79 (364)
T d1sdma_           1 KIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFEDT-KYLVQSAVDGYNVCIF   79 (364)
T ss_dssp             CCEEEEEECCCCHHHHHTTCCBCEEECSTTEEEEECSSSSEEEEECSEEECTTCCHHHHHHTT-THHHHHHHTTCEEEEE
T ss_pred             CeEEEEEcCCCChhhcccCCCCeEEeCCCCeEEecCCCCCceEEECCeecCCCCCHHHHHHHH-HHHHHHHhcCCceeee
Confidence            489999999999999876654443 445555443 3344668899999999999999999975 7999999999999999


Q ss_pred             EeccCCCCCccccCCCCCCCCchhHHHHHHHHhhccCC-CceEEEEEeeeeeecceeeeccCCCC---CccceeecC-CC
Q 001297          179 AYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTP-GREFLLRVSYLEIYNEVINDLLDPTG---QNLRVREDA-QG  253 (1105)
Q Consensus       179 aYGqTGSGKTyTm~G~~~~~GIipra~~~LF~~i~~~~-~~~~~v~vS~lEIYnE~i~DLL~p~~---~~l~ired~-~g  253 (1105)
                      |||||||||||||+|+..++|||||++.+||..+...+ ...|.|++||+|||||.|||||.|..   ..+.+++++ .|
T Consensus        80 aYGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~~~~~~~v~~S~~EIyne~i~DLL~~~~~~~~~l~~~~~~~~~  159 (364)
T d1sdma_          80 AYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGM  159 (364)
T ss_dssp             EECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEESSSCEEETTSCTTSCCCCCEEEECTTSC
T ss_pred             ccccCCCCcccccccCccccchhHHHHHHHHhhhhhccccccceEEEEEEEEeccccccccCcccccccccceeecccCc
Confidence            99999999999999999999999999999999997544 46899999999999999999998764   357888998 67


Q ss_pred             cEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCCCCcceEeeeeehhhhhccccccc
Q 001297          254 TYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLVRWFFLSVKTAYL  333 (1105)
Q Consensus       254 ~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~s~l~~~~~~~~~~~~l  333 (1105)
                      ++|.|++++.|.++++++.+|..|..+|++++|.+|..|||||+||+|.|.+...+.  .....++|.           |
T Consensus       160 ~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRsH~i~~i~v~~~~~~~--~~~~~~kl~-----------~  226 (364)
T d1sdma_         160 VSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQT--QAIARGKLS-----------F  226 (364)
T ss_dssp             EEEETCCCEEECSHHHHHHHHHHHHHHHCCCSSCTTCHHHHSEEEEEEEEEEEETTT--CCEEEEEEE-----------E
T ss_pred             cccccceeeeeCCHHHHHHHhhccceeeccccccccccccccceEEEEEEEEeccCc--ceeeeEEEE-----------e
Confidence            899999999999999999999999999999999999999999999999999876543  345667777           9


Q ss_pred             cccccccc---cccccccccccchhhhcHHHHHHHHHHhhcCCCCcccCCCCccchhcccCCCCCccceeEeeeCCCCCC
Q 001297          334 FQLYESSK---TETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSS  410 (1105)
Q Consensus       334 vDLa~s~k---~~~~g~r~~E~~~INkSL~aLg~VI~aLs~~k~~hvPyRdSkLTrLLqdsLgGnskt~mI~~IsP~~~~  410 (1105)
                      |||||+++   +++.|.+++|+.+||+||++||+||.+|+++. .||||||||||+||+|+|||||+|+|||||||+..+
T Consensus       227 vDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~aL~~~~-~~ipyR~SkLT~lL~d~Lggns~t~~I~~isp~~~~  305 (364)
T d1sdma_         227 VDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGN-QHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESN  305 (364)
T ss_dssp             EECCCCSCCCC---------CCCTTCHHHHHHHHHHHHHHHTC-SCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGG
T ss_pred             echhhccccccccccCceeeeccccccchhhHHHHHHHHHcCC-CcCCchhhhhhHHHHhhcCCCceEEEEEEeCCCcch
Confidence            99999875   67788999999999999999999999999865 599999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccccccccccccCHHHHHHHHHHHHHHHHHHHHH
Q 001297          411 MEETHNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQREISSLKEELDQ  459 (1105)
Q Consensus       411 ~~ETlsTL~fA~rak~I~~~~~~n~~~~~~~~i~~~~~ei~~Lk~el~~  459 (1105)
                      ++||++||+||+|||+|+|.|.+|+..+   .+.+|+++|..|++++..
T Consensus       306 ~~eTl~TL~fa~~ak~i~n~p~~n~~~~---~~~~l~~~i~~l~~~~~~  351 (364)
T d1sdma_         306 LDETHNSLTYASRVRSIVNDPSKNVSSK---EVARLKKLVSYWKEQAGR  351 (364)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCCCCCEECH---HHHHHHTTTTCC------
T ss_pred             HHHHHHHHHHHHHHhhcccCCcccCCHH---HHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999997542   366777777777766643
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Back     information, alignment and structure
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Back     information, alignment and structure
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Back     information, alignment and structure
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Back     information, alignment and structure
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Back     information, alignment and structure
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Back     information, alignment and structure
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure