Citrus Sinensis ID: 001307

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100---
MAAESTHLQQSQLAVILGPDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSIDAAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILCGKDLATEQTLSRIVNLLKQLQQTLPPATLASTWSSLQPQQQLALQSILS
cccccHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHcccHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHHc
ccccccHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccHHHHHHccHHHHHHHHHHHHHcccccccHHHHccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcHHHcHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcHcHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHccccccccEEEccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHcHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccHHccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccEccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHHc
MAAESTHLQQSQLAVilgpdsapFETLISHLMSTSNEQRSEAELLFNLckqqdpdslTLKLAHLLQRSPHPEARAMAAVLLRKLLtrddsflwprlslhtQSSLKSMLLQSIQLESAKSISKKLCDTVSELAsnilpengwpellpfmfqcvssdsvklQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNcltnsnnpdVKIAALNAVINFIQCLtssadrdrFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARErapgmmrkLPQFINRLFAILMSMLLDieddplwhsaetededagessnysvgQECLDRLAIAlggntivpvaseqlpaylaapEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLnsfrdphpRVRWAAINAIGQlstdlgpdlqnqfhpqvlpalagamddfqnprvQAHAASAVLnfsenctpeiltpYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLqgsqmetddpttSYMLQAWARLCKClgqdflpymsvvmppllqsaqlkpdvtitsadsdneiedsdddsmetiTLGDKRIGIKTSVLEEKATACNMLCCYADelkegffpwidqvaptLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEkglapgrnesYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIqisgplldegqvRSIVDEIKQVITASSSRKRERAERakaedfdaEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAflpffdelssyltpmwgkdktaEERRIAICIFDDVAEQCREAALKYYETYLPFLLEAAVYGLGVcaefggsvvkPLVGEALSRLNVvirhpnalqpenlMAYDNAVSALGKICQFHRDSIDAAQVVPAWlnclpikgdlIEAKIVHEQLCSMVersdsdllgpnhqylpKIVSVFAEILCGKDLATEQTLSRIVNLLKQLQqtlppatlastwsslqPQQQLALQSILS
maaesthlqqSQLAVILGPDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAesleegtrHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSadsdneiedsdddsmetitlgdkrigikTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQvitasssrkreraerakaedfdaeeselikeeneqeeEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSIDAAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILCGKDLATEQTLSRIVNLLKQLQQTLPPATLASTWSSLQPQQQLALQSILS
MAAESTHLQQSQLAVILGPDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNeataqealellielaGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWqkhhaalialaqiaEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSAdsdneiedsdddsmeTITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITasssrkreraerakaedfdaeeselikeeneqeeeVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSIDAAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILCGKDLATEQTLSRIVNLLKQLQQTLPPATLASTWsslqpqqqlalqsils
**************VIL**************************LLFNLCK******LTLKLAHLL********RAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESL*****ATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWH***************SVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDA*QVMEVL**************TSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQ*****************************ITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVI************************************VFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSIDAAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILCGKDLATEQTLSRIVNLLKQLQQTLP************************
******************PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARE**********QFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQME*DDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSIDAAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILCGKDLATEQTLSRIVNLLKQLQQTLPPATLASTWSSLQPQQQLALQSILS
**********SQLAVILGPDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSA**************VGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVIT**********************************EVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSIDAAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILCGKDLATEQTLSRIVNLLKQLQQTLPPATLAS******************
*********QSQ*AVILGPDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHS*********ESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEI*DSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAK*EDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSIDAAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILCGKDLATEQTLSRIVNLLKQLQQTLPPATLASTWSSLQPQQQLALQSILS
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MAAESTHLQQSQLAVILGPDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKxxxxxxxxxxxxxxxxxxxxxVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSIDAAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILCGKDLATEQTLSRIVNLLKQLQQTLPPATLASTWSSLQPQQQLALQSILS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1103 2.2.26 [Sep-21-2011]
O004101097 Importin-5 OS=Homo sapien yes no 0.953 0.958 0.371 0.0
Q8BKC51097 Importin-5 OS=Mus musculu yes no 0.953 0.958 0.369 0.0
O605181105 Ran-binding protein 6 OS= no no 0.951 0.949 0.350 0.0
Q8BIV31105 Ran-binding protein 6 OS= no no 0.954 0.952 0.353 0.0
O744761095 Importin subunit beta-3 O yes no 0.950 0.957 0.336 1e-162
P323371089 Importin subunit beta-3 O yes no 0.876 0.887 0.285 7e-99
Q54EW31067 Probable importin-5 homol yes no 0.894 0.925 0.261 2e-98
P400691113 Importin subunit beta-4 O no no 0.878 0.870 0.216 1e-40
O601001067 Probable importin subunit no no 0.877 0.907 0.207 6e-39
Q8TEX91081 Importin-4 OS=Homo sapien no no 0.766 0.782 0.233 3e-30
>sp|O00410|IPO5_HUMAN Importin-5 OS=Homo sapiens GN=IPO5 PE=1 SV=4 Back     alignment and function desciption
 Score =  718 bits (1853), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/1113 (37%), Positives = 645/1113 (57%), Gaps = 61/1113 (5%)

Query: 24   FETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRK 83
            F  L+ +L+S  N  R +AE  +     Q    +T  L  +   +   EAR MAAVLLR+
Sbjct: 11   FYLLLGNLLSPDNVVRKQAEETYENIPGQS--KITFLLQAIRNTTAAEEARQMAAVLLRR 68

Query: 84   LLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENG--- 140
            LL+     ++P L    Q+++KS LL  IQ+E+  S+ KK+CD  +ELA N++ E+G   
Sbjct: 69   LLSSAFDEVYPALPSDVQTAIKSELLMIIQMETQSSMRKKVCDIAAELARNLIDEDGNNQ 128

Query: 141  WPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPD 200
            WPE L F+F  VSS +V L+E+A  IF       G+    +L  +  + + C+ +  +P 
Sbjct: 129  WPEGLKFLFDSVSSQNVGLREAALHIFWNFPGIFGNQQQHYLDVIKRMLVQCMQDQEHPS 188

Query: 201  VKIAALNAVINFIQCLTSS-ADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELA 259
            ++  +  A   FI     + A    F DLLP  ++ + +S    +++     L+ L+E+A
Sbjct: 189  IRTLSARATAAFILANEHNVALFKHFADLLPGFLQAVNDSCYQNDDSV----LKSLVEIA 244

Query: 260  GTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFI 319
             T P++LR  L   +   L++    SL    R LA+E ++TL+E    A  M+RK    +
Sbjct: 245  DTVPKYLRPHLEATLQLSLKLCGDTSLNNMQRQLALEVIVTLSET---AAAMLRKHTNIV 301

Query: 320  NRLFAILMSMLLDIEDDPLWHSA-ETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVA 378
             +    +++M++D+E+D  W +A E ED+D    SN   G+  LDR+A  LGG  ++P+ 
Sbjct: 302  AQTIPQMLAMMVDLEEDEDWANADELEDDDF--DSNAVAGESALDRMACGLGGKLVLPMI 359

Query: 379  SEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAA 438
             E +   L  P+W+  HA L+AL+ I EGC + M   L ++++ VL   +DPHPRVR+AA
Sbjct: 360  KEHIMQMLQNPDWKYRHAGLMALSAIGEGCHQQMEGILNEIVNFVLLFLQDPHPRVRYAA 419

Query: 439  INAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILT 498
             NA+GQ++TD  P  Q +FH +V+ AL   M+D  N RVQAHAA+A++NF+E+C   +L 
Sbjct: 420  CNAVGQMATDFAPGFQKKFHEKVIAALLQTMEDQGNQRVQAHAAAALINFTEDCPKSLLI 479

Query: 499  PYLDGIVS--------KLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLK 550
            PYLD +V         KL  L+Q G ++V E  +T++ASVAD+++E F  YYD  MP LK
Sbjct: 480  PYLDNLVKHLHSIMVLKLQELIQKGTKLVLEQVVTSIASVADTAEEKFVPYYDLFMPSLK 539

Query: 551  AILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQG--SQMETDDP 608
             I+ NA  K  R+LR K++ECISL+G+AVGK+KF  DA  VM++L+  Q   + ME DDP
Sbjct: 540  HIVENAVQKELRLLRGKTIECISLIGLAVGKEKFMQDASDVMQLLLKTQTDFNDMEDDDP 599

Query: 609  TTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSM 668
              SYM+ AWAR+CK LG++F  Y+ VVM PL+++A +KP+V +   D+ +    SDDD  
Sbjct: 600  QISYMISAWARMCKILGKEFQQYLPVVMGPLMKTASIKPEVALL--DTQDMENMSDDDGW 657

Query: 669  ETITLGDKR-IGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHE 727
            E + LGD++  GIKT+ LEEK+TAC ML CYA ELKEGF  + +QV   +VPLLKFYFH+
Sbjct: 658  EFVNLGDQQSFGIKTAGLEEKSTACQMLVCYAKELKEGFVEYTEQVVKLMVPLLKFYFHD 717

Query: 728  EVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICAS 787
             VR AA  +MP LL  A++         R   Y+ Q+  F+  AL++A+  EPD+++ + 
Sbjct: 718  GVRVAAAESMPLLLECARV---------RGPEYLTQMWHFMCDALIKAIGTEPDSDVLSE 768

Query: 788  MLDSLNECIQISGP-LLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELI 846
            ++ S  +CI++ G   L+      +   +K  +      +  R  + + ED+D +  E +
Sbjct: 769  IMHSFAKCIEVMGDGCLNNEHFEELGGILKAKLEEHFKNQELRQVKRQDEDYDEQVEESL 828

Query: 847  KEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIF 906
            ++E++ +  +  +V +IL ++  ++K   LP+F++L   +  +    +   +R+  +CIF
Sbjct: 829  QDEDDNDVYILTKVSDILHSIFSSYKEKVLPWFEQLLPLIVNLICPHRPWPDRQWGLCIF 888

Query: 907  DDVAEQCREAALKYYETYL-----------PFLLEAAVYGLGVCAEFGGSVVKPLVGEAL 955
            DDV E C  A+ KY E +L           P + +AA YGLGV A++GG   +P   EAL
Sbjct: 889  DDVIEHCSPASFKYAEYFLRPMLQYVCDNSPEVRQAAAYGLGVMAQYGGDNYRPFCTEAL 948

Query: 956  SRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSIDAAQVVPAWLNCLPIKGDLIE 1015
              L  VI+  ++   EN+ A +N +SA+GKI +F  D ++  +V+P WL+ LP+  D  E
Sbjct: 949  PLLVRVIQSADSKTKENVNATENCISAVGKIMKFKPDCVNVEEVLPHWLSWLPLHEDKEE 1008

Query: 1016 AKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILCGKDLATEQTLS-RIVNLLKQL 1074
            A      LC ++E +   +LGPN+  LPKI S+ AE    + +  E   + R+ N+++Q+
Sbjct: 1009 AVQTFNYLCDLIESNHPIVLGPNNTNLPKIFSIIAEGEMHEAIKHEDPCAKRLANVVRQV 1068

Query: 1075 QQTLPPATLASTWS----SLQPQQQLALQSILS 1103
            Q      T    W+     L P+QQ A+Q +L+
Sbjct: 1069 Q------TSGGLWTECIAQLSPEQQAAIQELLN 1095
Functions in nuclear protein import as nuclear transport receptor. Serves as receptor for nuclear localization signals (NLS) in cargo substrates. Is thought to mediate docking of the importin/substrate complex to the nuclear pore complex (NPC) through binding to nucleoporin and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to the importin, the importin/substrate complex dissociates and importin is re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus (By similarity). Mediates the nuclear import of ribosomal proteins RPL23A, RPS7 and RPL5. Binds to a beta-like import receptor binding (BIB) domain of RPL23A. In vitro, mediates nuclear import of H2A, H2B, H3 and H4 histones. In case of HIV-1 infection, binds and mediates the nuclear import of HIV-1 Rev.
Homo sapiens (taxid: 9606)
>sp|Q8BKC5|IPO5_MOUSE Importin-5 OS=Mus musculus GN=Ipo5 PE=1 SV=3 Back     alignment and function description
>sp|O60518|RNBP6_HUMAN Ran-binding protein 6 OS=Homo sapiens GN=RANBP6 PE=1 SV=2 Back     alignment and function description
>sp|Q8BIV3|RNBP6_MOUSE Ran-binding protein 6 OS=Mus musculus GN=Ranbp6 PE=2 SV=3 Back     alignment and function description
>sp|O74476|IMB3_SCHPO Importin subunit beta-3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sal3 PE=3 SV=1 Back     alignment and function description
>sp|P32337|IMB3_YEAST Importin subunit beta-3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PSE1 PE=1 SV=2 Back     alignment and function description
>sp|Q54EW3|IPO5_DICDI Probable importin-5 homolog OS=Dictyostelium discoideum GN=DDB_G0291650 PE=3 SV=1 Back     alignment and function description
>sp|P40069|IMB4_YEAST Importin subunit beta-4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=KAP123 PE=1 SV=1 Back     alignment and function description
>sp|O60100|IMB4_SCHPO Probable importin subunit beta-4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=kap123 PE=3 SV=1 Back     alignment and function description
>sp|Q8TEX9|IPO4_HUMAN Importin-4 OS=Homo sapiens GN=IPO4 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1103
2254357541116 PREDICTED: importin-5 [Vitis vinifera] 1.0 0.988 0.892 0.0
2240569781114 predicted protein [Populus trichocarpa] 0.997 0.987 0.882 0.0
2240759801114 predicted protein [Populus trichocarpa] 0.997 0.987 0.887 0.0
4494638551116 PREDICTED: LOW QUALITY PROTEIN: importin 1.0 0.988 0.873 0.0
3565252741114 PREDICTED: importin-5-like [Glycine max] 0.993 0.983 0.880 0.0
2978121631116 EMB2734 [Arabidopsis lyrata subsp. lyrat 1.0 0.988 0.835 0.0
3575188891117 Ran-binding protein [Medicago truncatula 1.0 0.987 0.870 0.0
152411891116 armadillo/beta-catenin-like repeat-conta 1.0 0.988 0.830 0.0
2555825661095 importin beta-3, putative [Ricinus commu 0.958 0.965 0.862 0.0
2254415891116 PREDICTED: importin-5 [Vitis vinifera] 1.0 0.988 0.848 0.0
>gi|225435754|ref|XP_002285720.1| PREDICTED: importin-5 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1985 bits (5143), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 995/1115 (89%), Positives = 1061/1115 (95%), Gaps = 12/1115 (1%)

Query: 1    MAAESTHLQQSQLAVILGPDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLK 60
            M  EST LQQ+QLA ILGPD  PFETLISHLMSTSN+QRS AELLFNLCKQ DP+SL+LK
Sbjct: 1    MDPESTQLQQAQLAAILGPDPGPFETLISHLMSTSNDQRSHAELLFNLCKQSDPNSLSLK 60

Query: 61   LAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSI 120
            LAHLLQ SPH EARAMAA+LLRK LTRDDS+LWPRLS  TQSSLKS+LL  IQ E AKSI
Sbjct: 61   LAHLLQFSPHIEARAMAAILLRKQLTRDDSYLWPRLSASTQSSLKSILLGCIQREDAKSI 120

Query: 121  SKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTP 180
            SKKLCDTVSELAS+ILPENGWPELLPFMFQCV+SDS KLQE+AFLIFAQL+QYIG+TL P
Sbjct: 121  SKKLCDTVSELASSILPENGWPELLPFMFQCVTSDSAKLQEAAFLIFAQLAQYIGETLVP 180

Query: 181  HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESL 240
            H+KHLH+VFL  LT+S++ DVKIAAL+A INFIQCL+SSADRDRFQDLLP MMRTLTE+L
Sbjct: 181  HIKHLHSVFLQSLTSSSSSDVKIAALSAAINFIQCLSSSADRDRFQDLLPAMMRTLTEAL 240

Query: 241  NNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVIT 300
            N G EATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLA+EFVIT
Sbjct: 241  NCGQEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAVEFVIT 300

Query: 301  LAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQE 360
            LAEARERAPGMMRKLPQFI+RLFAILM MLLDIEDDP WHSA++EDEDAGESSNYSVGQE
Sbjct: 301  LAEARERAPGMMRKLPQFISRLFAILMKMLLDIEDDPAWHSADSEDEDAGESSNYSVGQE 360

Query: 361  CLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVL 420
            CLDRLAI+LGGNTIVPVASE LPAYLAAPEWQKHHAALIALAQIAEGC+KVM+KNLEQV+
Sbjct: 361  CLDRLAISLGGNTIVPVASELLPAYLAAPEWQKHHAALIALAQIAEGCSKVMIKNLEQVV 420

Query: 421  SMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAH 480
            +MVLN+F+DPHPRVRWAAINAIGQLSTDLGPDLQ Q+H +VLPALA +MDDFQNPRVQAH
Sbjct: 421  TMVLNTFQDPHPRVRWAAINAIGQLSTDLGPDLQVQYHQRVLPALAASMDDFQNPRVQAH 480

Query: 481  AASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQK 540
            AASAVLNFSENCTP+ILTPYLDGIV KLLVLLQNGKQMVQEGALTALASVADSSQEHFQK
Sbjct: 481  AASAVLNFSENCTPDILTPYLDGIVGKLLVLLQNGKQMVQEGALTALASVADSSQEHFQK 540

Query: 541  YYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQG 600
            YYDAVMP+LKAIL+NATDKSNRMLRAK+MECISLVGMAVGKDKFRDDAKQVMEVLMSLQG
Sbjct: 541  YYDAVMPYLKAILMNATDKSNRMLRAKAMECISLVGMAVGKDKFRDDAKQVMEVLMSLQG 600

Query: 601  SQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEI 660
            SQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEI
Sbjct: 601  SQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEI 660

Query: 661  EDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPL 720
            E+SDD+SMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPL
Sbjct: 661  EESDDESMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPL 720

Query: 721  LKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEP 780
            LKFYFHEEVRKAAVSAMPELLRSAKLA+EKGLA GRNESYVKQLSD+IIPALVEALHKEP
Sbjct: 721  LKFYFHEEVRKAAVSAMPELLRSAKLAVEKGLAQGRNESYVKQLSDYIIPALVEALHKEP 780

Query: 781  DTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDA 840
            DTEICASMLD+LNEC+QISG +LDE QVRSIVDEIKQVITASSSRKRERAER KAEDFDA
Sbjct: 781  DTEICASMLDALNECLQISGRILDESQVRSIVDEIKQVITASSSRKRERAERTKAEDFDA 840

Query: 841  EESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERR 900
            EE EL+KEENEQEEEVFDQVGEILGTLIKTFKA+FLPFFDEL+SYLTPMWGKDKTAEERR
Sbjct: 841  EEGELLKEENEQEEEVFDQVGEILGTLIKTFKASFLPFFDELASYLTPMWGKDKTAEERR 900

Query: 901  IAICIFDDVAEQCREAALKYYETYLPFLLE-----------AAVYGLGVCAEFGGSVVKP 949
            IAICIFDDVAEQCREAALKYY+TYLPFLLE           AAVYGLGVCAEFGG+  KP
Sbjct: 901  IAICIFDDVAEQCREAALKYYDTYLPFLLEACNDDNSDVRQAAVYGLGVCAEFGGAAFKP 960

Query: 950  LVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSIDAAQVVPAWLNCLPI 1009
            LVGEALSRLNVVIRHPNALQP+N+MAYDNAVSALGKICQFHRDSID+AQVVPAWL+CLPI
Sbjct: 961  LVGEALSRLNVVIRHPNALQPDNVMAYDNAVSALGKICQFHRDSIDSAQVVPAWLSCLPI 1020

Query: 1010 KGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILC-GKDLATEQTLSRIV 1068
            KGDLIEAK+VH+QLCSMVE SD +LLGPN+QYLP+IV+VFAE+LC GKDLATEQT+SR++
Sbjct: 1021 KGDLIEAKVVHDQLCSMVEMSDRELLGPNNQYLPQIVAVFAEVLCAGKDLATEQTISRMI 1080

Query: 1069 NLLKQLQQTLPPATLASTWSSLQPQQQLALQSILS 1103
            NLL+QLQQTLPP+TLASTWSSLQPQQQLALQSILS
Sbjct: 1081 NLLRQLQQTLPPSTLASTWSSLQPQQQLALQSILS 1115

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224056978|ref|XP_002299105.1| predicted protein [Populus trichocarpa] gi|222846363|gb|EEE83910.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224075980|ref|XP_002304857.1| predicted protein [Populus trichocarpa] gi|222842289|gb|EEE79836.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449463855|ref|XP_004149646.1| PREDICTED: LOW QUALITY PROTEIN: importin-5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356525274|ref|XP_003531251.1| PREDICTED: importin-5-like [Glycine max] Back     alignment and taxonomy information
>gi|297812163|ref|XP_002873965.1| EMB2734 [Arabidopsis lyrata subsp. lyrata] gi|297319802|gb|EFH50224.1| EMB2734 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357518889|ref|XP_003629733.1| Ran-binding protein [Medicago truncatula] gi|355523755|gb|AET04209.1| Ran-binding protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|15241189|ref|NP_197483.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] gi|14334742|gb|AAK59549.1| unknown protein [Arabidopsis thaliana] gi|15293299|gb|AAK93760.1| unknown protein [Arabidopsis thaliana] gi|332005369|gb|AED92752.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255582566|ref|XP_002532066.1| importin beta-3, putative [Ricinus communis] gi|223528270|gb|EEF30321.1| importin beta-3, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225441589|ref|XP_002281591.1| PREDICTED: importin-5 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1103
TAIR|locus:21832191116 emb2734 "AT5G19820" [Arabidops 0.985 0.974 0.767 0.0
UNIPROTKB|O004101097 IPO5 "Importin-5" [Homo sapien 0.933 0.938 0.353 1.2e-168
MGI|MGI:19178221097 Ipo5 "importin 5" [Mus musculu 0.933 0.938 0.351 1.2e-168
FB|FBgn00870131105 Karybeta3 "Karyopherin beta 3" 0.945 0.943 0.333 6e-167
RGD|13087151097 Ipo5 "importin 5" [Rattus norv 0.933 0.938 0.349 7.6e-167
UNIPROTKB|F1RP441067 IPO5 "Uncharacterized protein" 0.905 0.936 0.355 1.6e-166
UNIPROTKB|H0Y8C61099 IPO5 "Importin-5" [Homo sapien 0.905 0.909 0.355 3.3e-166
UNIPROTKB|E2RF061089 IPO5 "Uncharacterized protein" 0.927 0.939 0.351 3.8e-165
MGI|MGI:26832121105 Ranbp6 "RAN binding protein 6" 0.932 0.930 0.333 8.5e-152
UNIPROTKB|O605181105 RANBP6 "Ran-binding protein 6" 0.932 0.930 0.332 1.1e-151
TAIR|locus:2183219 emb2734 "AT5G19820" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 4340 (1532.8 bits), Expect = 0., P = 0.
 Identities = 843/1099 (76%), Positives = 940/1099 (85%)

Query:     1 MAAESTHLQQSQLAVILGPDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLK 60
             MA+E+  LQQ+QLA++LG DSAPFETLISHLMS+SNEQRS AE LFNL KQ +PD+L+LK
Sbjct:     1 MASEANQLQQAQLAMVLGSDSAPFETLISHLMSSSNEQRSSAESLFNLAKQSNPDTLSLK 60

Query:    61 LAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSI 120
             LAHLLQ SPHPE RAMAAVLLRKLLTRDD++LWPRLSL TQSSLKS +L  IQ E AKSI
Sbjct:    61 LAHLLQLSPHPEGRAMAAVLLRKLLTRDDAYLWPRLSLSTQSSLKSSMLYCIQHEEAKSI 120

Query:   121 SKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTP 180
             SKK+CDTVSELAS ILPENGWPELLPF+FQCV+S + KLQESAFLI AQLSQY+G+TLTP
Sbjct:   121 SKKICDTVSELASGILPENGWPELLPFVFQCVTSVTPKLQESAFLILAQLSQYVGETLTP 180

Query:   181 HLKHLHAVFLNCLT-NSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTES 239
             H+K LH VFL CL+ NS + DVKIAALNAVI+F+QCL +S +RDRFQD+LP M+RTLTES
Sbjct:   181 HIKELHGVFLQCLSSNSASSDVKIAALNAVISFVQCLANSTERDRFQDVLPAMIRTLTES 240

Query:   240 LNNGNXXXXXXXXXXXXXXXGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVI 299
             LNNGN               GTEPRFLRRQLVD+VGSMLQIAEA+SLEE TRHLAIEF++
Sbjct:   241 LNNGNEATAQEALELLIELAGTEPRFLRRQLVDIVGSMLQIAEADSLEESTRHLAIEFLV 300

Query:   300 TLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQ 359
             TLAEARERAPGM+RKLPQFI+RLFA+LM ML DIEDDP W+SAETEDEDAGE+SNYS+GQ
Sbjct:   301 TLAEARERAPGMVRKLPQFIDRLFAVLMKMLEDIEDDPAWYSAETEDEDAGETSNYSMGQ 360

Query:   360 ECLDRLAIALGGNTIVPVASEQLPAYLAAPEWXXXXXXXXXXXXXXEGCAKVMVKNLEQV 419
             ECLDRLAI+LGGNTIVPVA +Q  AYLAA EW              EGC+KVM+KNL+QV
Sbjct:   361 ECLDRLAISLGGNTIVPVAYQQFSAYLAASEWQKHHASLIALAQIAEGCSKVMIKNLDQV 420

Query:   420 LSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQA 479
             +SMVL+ F+ PHPRVRWAAINAIGQLSTDLGPDLQNQ H +VLPALA AMDDFQNPRVQA
Sbjct:   421 VSMVLSQFQSPHPRVRWAAINAIGQLSTDLGPDLQNQHHERVLPALAAAMDDFQNPRVQA 480

Query:   480 HAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQ 539
             HAASAVLNFSENCTPEIL+PYLDG+VSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQ
Sbjct:   481 HAASAVLNFSENCTPEILSPYLDGVVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQ 540

Query:   540 KYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQ 599
             KYYD VMP+LK IL+NATDKS RMLRAKSMECISLVGMAVGKD+F++DA+QVMEVLMSLQ
Sbjct:   541 KYYDTVMPYLKTILMNATDKSKRMLRAKSMECISLVGMAVGKDRFKEDARQVMEVLMSLQ 600

Query:   600 GSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSAXXXXX 659
             GSQME DDP TSYMLQAWARLCKCLGQDFLPYM VVMPPLLQSAQLKPDVTITSA     
Sbjct:   601 GSQMEADDPITSYMLQAWARLCKCLGQDFLPYMKVVMPPLLQSAQLKPDVTITSADSEDE 660

Query:   660 XXXXXXXXXXTITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVP 719
                       TI LGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVP
Sbjct:   661 AEDSDDESMETIILGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVP 720

Query:   720 LLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKE 779
             LLKFYFHEEVR+AAVSAMPEL+RSAKLAIEKG + GR+ SY+KQLSD+IIPA++EALHKE
Sbjct:   721 LLKFYFHEEVRRAAVSAMPELMRSAKLAIEKGESQGRDLSYLKQLSDYIIPAMLEALHKE 780

Query:   780 PDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITXXXXXXXXXXXXXXXXXXX 839
             PDTEIC SML+++NEC+QISG LLDEG++RSIVDEIKQV+T                   
Sbjct:   781 PDTEICVSMLEAINECLQISGNLLDEGKIRSIVDEIKQVMTASSSRKRERGERAHAEDFD 840

Query:   840 XXXXXXXXXXXXXXXXVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEER 899
                             +FDQVGEILGTL+KTFKA+FLPFFDELSSYLTPMWG+DKTAEER
Sbjct:   841 AEEGELIKEENEQEEEIFDQVGEILGTLVKTFKASFLPFFDELSSYLTPMWGRDKTAEER 900

Query:   900 RIAICIFDDVAEQCREAALKYYETYLPFLLEA-----------AVYGLGVCAEFGGSVVK 948
             RIAICIFDDVAEQCREAA KYY+TYLPF+LEA           AVYGLGVCAEFGGSV K
Sbjct:   901 RIAICIFDDVAEQCREAAFKYYDTYLPFVLEACNDESPEVRQAAVYGLGVCAEFGGSVFK 960

Query:   949 PLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSIDAAQVVPAWLNCLP 1008
             PL+GEALSRLNVVI+ PNA Q EN MAYDNAVSA+GKICQFHRDSID++QV+PAWLNCLP
Sbjct:   961 PLIGEALSRLNVVIQLPNARQSENAMAYDNAVSAVGKICQFHRDSIDSSQVLPAWLNCLP 1020

Query:  1009 IKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILCGKDLATEQTLSRIV 1068
             I  D++EAK+VH+QLCSMVER D DLLGPN+Q+LPKI+ VFAE+L GKD+ T++T  R++
Sbjct:  1021 ISNDVLEAKVVHDQLCSMVERQDVDLLGPNNQHLPKILIVFAEVLTGKDVVTQETAGRMI 1080

Query:  1069 NLLKQLQQTLPPATLASTW 1087
             N+L+QLQQTLPP+ LASTW
Sbjct:  1081 NILRQLQQTLPPSALASTW 1099
GO:0009793 "embryo development ending in seed dormancy" evidence=NAS
GO:0016829 "lyase activity" evidence=ISS
GO:0030089 "phycobilisome" evidence=ISS
GO:0005618 "cell wall" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0009165 "nucleotide biosynthetic process" evidence=RCA
GO:0052541 "plant-type cell wall cellulose metabolic process" evidence=RCA
GO:0052546 "cell wall pectin metabolic process" evidence=RCA
UNIPROTKB|O00410 IPO5 "Importin-5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1917822 Ipo5 "importin 5" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
FB|FBgn0087013 Karybeta3 "Karyopherin beta 3" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
RGD|1308715 Ipo5 "importin 5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1RP44 IPO5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|H0Y8C6 IPO5 "Importin-5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RF06 IPO5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:2683212 Ranbp6 "RAN binding protein 6" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|O60518 RANBP6 "Ran-binding protein 6" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8BKC5IPO5_MOUSENo assigned EC number0.36920.95370.9589yesno
O74476IMB3_SCHPONo assigned EC number0.33660.95010.9570yesno
O00410IPO5_HUMANNo assigned EC number0.37100.95370.9589yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.99LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1103
COG5215858 COG5215, KAP95, Karyopherin (importin) beta [Intra 2e-12
pfam1364688 pfam13646, HEAT_2, HEAT repeats 8e-07
pfam1351355 pfam13513, HEAT_EZ, HEAT-like repeat 2e-05
COG51011053 COG5101, CRM1, Importin beta-related nuclear trans 1e-04
smart0091367 smart00913, IBN_N, Importin-beta N-terminal domain 2e-04
pfam1351355 pfam13513, HEAT_EZ, HEAT-like repeat 5e-04
PRK13800897 PRK13800, PRK13800, putative oxidoreductase/HEAT r 0.002
pfam1275597 pfam12755, Vac14_Fab1_bd, Vacuolar 14 Fab1-binding 0.003
>gnl|CDD|227540 COG5215, KAP95, Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information 
 Score = 71.1 bits (174), Expect = 2e-12
 Identities = 113/612 (18%), Positives = 232/612 (37%), Gaps = 59/612 (9%)

Query: 71  PEARAMAAVLLRKLLTRDDSFL-------WPRLSLHTQSSLKSMLLQSIQLESAKSISKK 123
            + R +A ++L+  L  +D  L       W  +   ++  +K M L+++     KS   +
Sbjct: 55  DQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQVKGMALRAL-----KSPEPR 109

Query: 124 LCDTVSELASNI----LPENGWPELLPFMFQCVSSD-SVKLQESAFLIFAQLSQYIGDTL 178
            C   ++L + I    LP + WP L+  M + V  +  V  +  +  I      Y  ++ 
Sbjct: 110 FCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICG----YHCESE 165

Query: 179 TPHL------KHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLM 232
            P          L A+ +  L N     V++AAL A+++ +  +  +   +  ++     
Sbjct: 166 APEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYF--- 222

Query: 233 MRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRH 292
           M+ + E+    +E     A   L ++     +F++  + + + ++      +S  +    
Sbjct: 223 MQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALT-GRFMKSQNDEVAI 281

Query: 293 LAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGES 352
            A+EF  T+ E         + LP+   +      + + D+  + L    E + ED    
Sbjct: 282 QAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPE-LLSLLEKQGEDYYGD 340

Query: 353 --SNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAK 410
             +       CL   A  L G+ I+      +   + +  W    AA++A   +  G  +
Sbjct: 341 DWNPSMAASSCLQLFA-QLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCE 399

Query: 411 VMV-KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFH--PQVLPALAG 467
             + K + Q L  + N   D    V+       G ++  +   +    H   +V  +L G
Sbjct: 400 DCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIG 459

Query: 468 AMDDFQNPRVQAHAASAVLNFSE------NCTPEILTPYLDGIVSKLL-----VLLQNGK 516
            MD    P    + +    N  +            L  +   I++ L+      L ++  
Sbjct: 460 LMD---CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNL 516

Query: 517 QMVQEGALTALASVA-DSSQEHFQKYYDAVMPFLK---AILVNATDKSNRMLRAKSMECI 572
           ++    AL  L  +  D+  +    +YD     L    ++L       +++L  +     
Sbjct: 517 RVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNY 576

Query: 573 SLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSY--MLQAWARLCKCLGQDFLP 630
             V  A+ +   R D + V + LM L    +E+  PTT++  +  A + L   L + F  
Sbjct: 577 IGVLEAIIR-TRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQ 635

Query: 631 YMSVVMPPLLQS 642
           Y S  +P L ++
Sbjct: 636 YASKFIPYLTRA 647

Length = 858
>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats Back     alignment and domain information
>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat Back     alignment and domain information
>gnl|CDD|227432 COG5101, CRM1, Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|197981 smart00913, IBN_N, Importin-beta N-terminal domain Back     alignment and domain information
>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat Back     alignment and domain information
>gnl|CDD|237512 PRK13800, PRK13800, putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>gnl|CDD|193231 pfam12755, Vac14_Fab1_bd, Vacuolar 14 Fab1-binding region Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1103
KOG21711075 consensus Karyopherin (importin) beta 3 [Nuclear s 100.0
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 100.0
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 100.0
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 100.0
KOG21711075 consensus Karyopherin (importin) beta 3 [Nuclear s 100.0
KOG19911010 consensus Nuclear transport receptor RANBP7/RANBP8 100.0
KOG1824 1233 consensus TATA-binding protein-interacting protein 100.0
KOG1992960 consensus Nuclear export receptor CSE1/CAS (import 99.98
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 99.98
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 99.97
KOG18241233 consensus TATA-binding protein-interacting protein 99.97
KOG1993978 consensus Nuclear transport receptor KAP120 (impor 99.96
KOG22741005 consensus Predicted importin 9 [Intracellular traf 99.95
COG5656970 SXM1 Importin, protein involved in nuclear import 99.94
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 99.92
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 99.91
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 99.9
KOG09151702 consensus Uncharacterized conserved protein [Funct 99.86
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 99.86
KOG2022982 consensus Nuclear transport receptor LGL2 (importi 99.85
KOG2021980 consensus Nuclear mRNA export factor receptor LOS1 99.85
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 99.84
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 99.82
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 99.82
COG51011053 CRM1 Importin beta-related nuclear transport recep 99.8
COG5657947 CSE1 CAS/CSE protein involved in chromosome segreg 99.76
KOG1242569 consensus Protein containing adaptin N-terminal re 99.74
KOG09151702 consensus Uncharacterized conserved protein [Funct 99.71
KOG19911010 consensus Nuclear transport receptor RANBP7/RANBP8 99.71
KOG1242569 consensus Protein containing adaptin N-terminal re 99.7
KOG12481176 consensus Uncharacterized conserved protein [Funct 99.65
KOG2081559 consensus Nuclear transport regulator [Intracellul 99.59
PTZ00429746 beta-adaptin; Provisional 99.57
KOG0212675 consensus Uncharacterized conserved protein [Funct 99.56
KOG0212675 consensus Uncharacterized conserved protein [Funct 99.56
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.53
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.49
KOG1248 1176 consensus Uncharacterized conserved protein [Funct 99.44
PTZ00429746 beta-adaptin; Provisional 99.44
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 99.43
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 99.42
KOG1992960 consensus Nuclear export receptor CSE1/CAS (import 99.41
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 99.36
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 99.35
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 99.25
KOG2274 1005 consensus Predicted importin 9 [Intracellular traf 99.19
PF08506370 Cse1: Cse1; InterPro: IPR013713 The exchange of ma 99.16
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 99.14
PRK09687280 putative lyase; Provisional 99.13
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 99.12
KOG19431133 consensus Beta-tubulin folding cofactor D [Posttra 99.1
KOG1943 1133 consensus Beta-tubulin folding cofactor D [Posttra 99.07
KOG1060968 consensus Vesicle coat complex AP-3, beta subunit 99.05
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.04
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.04
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 99.03
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 99.02
KOG1060968 consensus Vesicle coat complex AP-3, beta subunit 99.02
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 99.02
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 98.9
PRK09687280 putative lyase; Provisional 98.9
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 98.88
KOG12401431 consensus Protein kinase containing WD40 repeats [ 98.87
KOG2021 980 consensus Nuclear mRNA export factor receptor LOS1 98.86
KOG1059877 consensus Vesicle coat complex AP-3, delta subunit 98.84
KOG20201041 consensus Nuclear transport receptor CRM1/MSN5 (im 98.79
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 98.79
KOG1993978 consensus Nuclear transport receptor KAP120 (impor 98.78
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 98.76
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 98.74
KOG0891 2341 consensus DNA-dependent protein kinase [Replicatio 98.73
PF03378435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 98.73
KOG1059877 consensus Vesicle coat complex AP-3, delta subunit 98.68
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 98.63
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 98.63
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 98.61
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 98.6
KOG4224550 consensus Armadillo repeat protein VAC8 required f 98.59
COG5656970 SXM1 Importin, protein involved in nuclear import 98.55
KOG10201692 consensus Sister chromatid cohesion protein SCC2/N 98.55
PF0381077 IBN_N: Importin-beta N-terminal domain; InterPro: 98.52
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 98.5
KOG0392 1549 consensus SNF2 family DNA-dependent ATPase domain- 98.49
KOG4224550 consensus Armadillo repeat protein VAC8 required f 98.45
KOG2032533 consensus Uncharacterized conserved protein [Funct 98.45
KOG2022982 consensus Nuclear transport receptor LGL2 (importi 98.45
KOG1820815 consensus Microtubule-associated protein [Cytoskel 98.45
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 98.44
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 98.35
KOG4535728 consensus HEAT and armadillo repeat-containing pro 98.33
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 98.32
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 98.26
PF04510174 DUF577: Family of unknown function (DUF577); Inter 98.25
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 98.14
PF03378435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 98.1
KOG1058948 consensus Vesicle coat complex COPI, beta subunit 98.09
KOG4413524 consensus 26S proteasome regulatory complex, subun 98.06
KOG2259823 consensus Uncharacterized conserved protein [Funct 98.05
KOG2259823 consensus Uncharacterized conserved protein [Funct 98.04
PF08389148 Xpo1: Exportin 1-like protein; InterPro: IPR013598 97.98
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 97.95
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 97.95
KOG2956516 consensus CLIP-associating protein [General functi 97.95
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 97.94
KOG01681051 consensus Putative ubiquitin fusion degradation pr 97.91
KOG14101082 consensus Nuclear transport receptor RanBP16 (impo 97.91
KOG2032533 consensus Uncharacterized conserved protein [Funct 97.89
COG5096757 Vesicle coat complex, various subunits [Intracellu 97.89
KOG1078865 consensus Vesicle coat complex COPI, gamma subunit 97.89
KOG1058948 consensus Vesicle coat complex COPI, beta subunit 97.87
KOG2956516 consensus CLIP-associating protein [General functi 97.86
KOG04141251 consensus Chromosome condensation complex Condensi 97.83
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 97.78
PLN030761780 ARF guanine nucleotide exchange factor (ARF-GEF); 97.77
PF05804708 KAP: Kinesin-associated protein (KAP) 97.76
KOG4653982 consensus Uncharacterized conserved protein [Funct 97.75
PF08506370 Cse1: Cse1; InterPro: IPR013713 The exchange of ma 97.74
PF08167165 RIX1: rRNA processing/ribosome biogenesis 97.73
KOG45241014 consensus Uncharacterized conserved protein [Funct 97.67
KOG04131529 consensus Uncharacterized conserved protein relate 97.66
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 97.63
KOG4535728 consensus HEAT and armadillo repeat-containing pro 97.61
KOG1293678 consensus Proteins containing armadillo/beta-caten 97.61
PF05804708 KAP: Kinesin-associated protein (KAP) 97.61
KOG4413524 consensus 26S proteasome regulatory complex, subun 97.6
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.6
KOG1077 938 consensus Vesicle coat complex AP-2, alpha subunit 97.55
PF08167165 RIX1: rRNA processing/ribosome biogenesis 97.55
KOG2933334 consensus Uncharacterized conserved protein [Funct 97.51
KOG2062929 consensus 26S proteasome regulatory complex, subun 97.51
KOG1078865 consensus Vesicle coat complex COPI, gamma subunit 97.49
COG5096757 Vesicle coat complex, various subunits [Intracellu 97.49
PF14500262 MMS19_N: Dos2-interacting transcription regulator 97.48
PF11864464 DUF3384: Domain of unknown function (DUF3384); Int 97.48
PF13251182 DUF4042: Domain of unknown function (DUF4042) 97.47
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 97.45
PF14500262 MMS19_N: Dos2-interacting transcription regulator 97.41
KOG1077938 consensus Vesicle coat complex AP-2, alpha subunit 97.4
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 97.4
PF10274183 ParcG: Parkin co-regulated protein; InterPro: IPR0 97.39
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 97.38
PF05004309 IFRD: Interferon-related developmental regulator ( 97.38
KOG15171387 consensus Guanine nucleotide binding protein MIP1 97.35
KOG1820815 consensus Microtubule-associated protein [Cytoskel 97.34
KOG4653982 consensus Uncharacterized conserved protein [Funct 97.31
PF05004309 IFRD: Interferon-related developmental regulator ( 97.29
PLN030761780 ARF guanine nucleotide exchange factor (ARF-GEF); 97.25
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 97.21
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 97.16
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 97.14
KOG45241014 consensus Uncharacterized conserved protein [Funct 97.11
KOG2025892 consensus Chromosome condensation complex Condensi 97.08
KOG2759442 consensus Vacuolar H+-ATPase V1 sector, subunit H 97.05
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 96.99
PF13251182 DUF4042: Domain of unknown function (DUF4042) 96.98
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 96.9
PF08064107 UME: UME (NUC010) domain; InterPro: IPR012993 This 96.84
PF10521282 DUF2454: Protein of unknown function (DUF2454); In 96.83
TIGR02270410 conserved hypothetical protein. Members are found 96.79
PF10274183 ParcG: Parkin co-regulated protein; InterPro: IPR0 96.79
COG1413335 FOG: HEAT repeat [Energy production and conversion 96.78
KOG0946970 consensus ER-Golgi vesicle-tethering protein p115 96.76
KOG04131529 consensus Uncharacterized conserved protein relate 96.67
PF11865160 DUF3385: Domain of unknown function (DUF3385); Int 96.66
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 96.65
smart00802107 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. 96.61
PF08569335 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro 96.6
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 96.59
KOG1293678 consensus Proteins containing armadillo/beta-caten 96.58
KOG1243690 consensus Protein kinase [General function predict 96.45
PF13001501 Ecm29: Proteasome stabiliser; InterPro: IPR024372 96.44
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 96.41
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 96.38
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 96.24
COG1413335 FOG: HEAT repeat [Energy production and conversion 96.24
KOG4500604 consensus Rho/Rac GTPase guanine nucleotide exchan 96.22
KOG19491005 consensus Uncharacterized conserved protein [Funct 96.2
PF05536543 Neurochondrin: Neurochondrin 96.01
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 95.92
smart00802107 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. 95.9
PF01603409 B56: Protein phosphatase 2A regulatory B subunit ( 95.9
PF08064107 UME: UME (NUC010) domain; InterPro: IPR012993 This 95.87
PF08623169 TIP120: TATA-binding protein interacting (TIP20); 95.86
KOG2062929 consensus 26S proteasome regulatory complex, subun 95.84
TIGR02270410 conserved hypothetical protein. Members are found 95.82
COG5116926 RPN2 26S proteasome regulatory complex component [ 95.82
KOG0946970 consensus ER-Golgi vesicle-tethering protein p115 95.77
KOG2149393 consensus Uncharacterized conserved protein [Funct 95.72
PF11865160 DUF3385: Domain of unknown function (DUF3385); Int 95.72
KOG2933334 consensus Uncharacterized conserved protein [Funct 95.7
KOG0889 3550 consensus Histone acetyltransferase SAGA, TRRAP/TR 95.64
KOG15171387 consensus Guanine nucleotide binding protein MIP1 95.61
PF12231372 Rif1_N: Rap1-interacting factor 1 N terminal; Inte 95.6
KOG04141251 consensus Chromosome condensation complex Condensi 95.37
PF13001501 Ecm29: Proteasome stabiliser; InterPro: IPR024372 95.32
KOG18511710 consensus Uncharacterized conserved protein [Funct 95.3
KOG2137700 consensus Protein kinase [Signal transduction mech 95.2
KOG2025892 consensus Chromosome condensation complex Condensi 94.96
PF12231372 Rif1_N: Rap1-interacting factor 1 N terminal; Inte 94.89
PF04118307 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do 94.87
KOG2137700 consensus Protein kinase [Signal transduction mech 94.87
PF08767319 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 94.83
COG5095450 TAF6 Transcription initiation factor TFIID, subuni 94.77
PF10521282 DUF2454: Protein of unknown function (DUF2454); In 94.72
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 94.63
PF01603409 B56: Protein phosphatase 2A regulatory B subunit ( 94.61
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 94.58
KOG0392 1549 consensus SNF2 family DNA-dependent ATPase domain- 94.42
KOG0567289 consensus HEAT repeat-containing protein [General 94.37
PF08767319 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 94.35
COG5095450 TAF6 Transcription initiation factor TFIID, subuni 94.24
COG5218885 YCG1 Chromosome condensation complex Condensin, su 94.17
KOG0891 2341 consensus DNA-dependent protein kinase [Replicatio 94.14
KOG2549576 consensus Transcription initiation factor TFIID, s 94.09
PF12530234 DUF3730: Protein of unknown function (DUF3730) ; I 94.06
cd08050343 TAF6 TATA Binding Protein (TBP) Associated Factor 94.03
PF1036392 DUF2435: Protein of unknown function (DUF2435) 93.75
KOG0803 1312 consensus Predicted E3 ubiquitin ligase [Posttrans 93.64
KOG2149393 consensus Uncharacterized conserved protein [Funct 93.61
KOG1243690 consensus Protein kinase [General function predict 93.53
KOG1048717 consensus Neural adherens junction protein Plakoph 93.52
KOG2549576 consensus Transcription initiation factor TFIID, s 93.24
PF11864464 DUF3384: Domain of unknown function (DUF3384); Int 93.23
KOG18371621 consensus Uncharacterized conserved protein [Funct 93.06
PF00790140 VHS: VHS domain; InterPro: IPR002014 The VHS domai 93.04
cd08050343 TAF6 TATA Binding Protein (TBP) Associated Factor 92.67
PF12054441 DUF3535: Domain of unknown function (DUF3535); Int 92.61
KOG19491005 consensus Uncharacterized conserved protein [Funct 92.51
KOG1222791 consensus Kinesin associated protein KAP [Intracel 92.44
PF05536543 Neurochondrin: Neurochondrin 92.35
PF08623169 TIP120: TATA-binding protein interacting (TIP20); 92.22
COG5218885 YCG1 Chromosome condensation complex Condensin, su 92.12
COG5116926 RPN2 26S proteasome regulatory complex component [ 92.11
PF1036392 DUF2435: Protein of unknown function (DUF2435) 92.05
PF04118307 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do 91.87
KOG2759442 consensus Vacuolar H+-ATPase V1 sector, subunit H 91.22
KOG0567289 consensus HEAT repeat-containing protein [General 91.02
cd03561133 VHS VHS domain family; The VHS domain is present i 90.62
KOG2122 2195 consensus Beta-catenin-binding protein APC, contai 90.07
KOG0889 3550 consensus Histone acetyltransferase SAGA, TRRAP/TR 89.9
KOG2122 2195 consensus Beta-catenin-binding protein APC, contai 89.9
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 89.23
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 89.19
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 89.04
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 88.95
cd03569142 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s 88.95
smart00288133 VHS Domain present in VPS-27, Hrs and STAM. Unpubl 88.88
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 88.74
KOG1048717 consensus Neural adherens junction protein Plakoph 88.54
PF08389148 Xpo1: Exportin 1-like protein; InterPro: IPR013598 88.51
PF12054441 DUF3535: Domain of unknown function (DUF3535); Int 88.2
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 87.73
KOG1877 819 consensus Putative transmembrane protein cmp44E [G 87.16
KOG3961262 consensus Uncharacterized conserved protein [Funct 87.03
KOG18481610 consensus Uncharacterized conserved protein [Funct 86.75
PF0932486 DUF1981: Domain of unknown function (DUF1981); Int 86.64
cd03569142 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s 86.63
smart00288133 VHS Domain present in VPS-27, Hrs and STAM. Unpubl 86.47
PF12333102 Ipi1_N: Rix1 complex component involved in 60S rib 86.41
PF12830187 Nipped-B_C: Sister chromatid cohesion C-terminus 86.26
KOG09291514 consensus Guanine nucleotide exchange factor [Intr 86.26
cd03561133 VHS VHS domain family; The VHS domain is present i 85.8
smart00638574 LPD_N Lipoprotein N-terminal Domain. 85.77
KOG1822 2067 consensus Uncharacterized conserved protein [Funct 85.51
cd03567139 VHS_GGA VHS domain family, GGA subfamily; GGA (Gol 85.49
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 84.69
KOG1822 2067 consensus Uncharacterized conserved protein [Funct 84.5
smart00638574 LPD_N Lipoprotein N-terminal Domain. 84.13
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 83.87
PF11698119 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 83.58
PF00790140 VHS: VHS domain; InterPro: IPR002014 The VHS domai 83.46
KOG3036293 consensus Protein involved in cell differentiation 82.46
KOG2213460 consensus Apoptosis inhibitor 5/fibroblast growth 81.39
PF12726727 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The y 81.27
PF04388 668 Hamartin: Hamartin protein; InterPro: IPR007483 Th 81.21
PF04388668 Hamartin: Hamartin protein; InterPro: IPR007483 Th 81.19
COG5657947 CSE1 CAS/CSE protein involved in chromosome segreg 80.68
PF0932486 DUF1981: Domain of unknown function (DUF1981); Int 80.4
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=8.6e-140  Score=1179.49  Aligned_cols=1059  Identities=46%  Similarity=0.767  Sum_probs=983.5

Q ss_pred             CChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCChhHHHHHHHHHHHhcccCCCCccccCCH
Q 001307           19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSL   98 (1103)
Q Consensus        19 ~d~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~   98 (1103)
                      ||.++|.+|+..+.||||++|++||+.|+....+.|  .++.|.+++.+++++++||+|++++||++.++    |+.++.
T Consensus         1 ~~~~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~--~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~----w~~l~~   74 (1075)
T KOG2171|consen    1 MDSAPLEQLLQQLLSPDNEVRRQAEEALETLAKTEP--LLPALAHILATSADPQVRQLAAVLLRKLLTKH----WSRLSA   74 (1075)
T ss_pred             CchhHHHHHHHHhcCCCchHHHHHHHHHHHhhcccc--hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH----hhcCCH
Confidence            577899999999999999999999999997665333  67999999999999999999999999999997    999999


Q ss_pred             HHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhc
Q 001307           99 HTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTL  178 (1103)
Q Consensus        99 ~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l  178 (1103)
                      +.++.||+.++..+.+|+.+.||+++|++|+.+++.+++. +||+++++++++.+|+++..|+.|+.+|..+.+.+++.+
T Consensus        75 e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~  153 (1075)
T KOG2171|consen   75 EVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTL  153 (1075)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcccc
Confidence            9999999999999999999999999999999999999996 999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcC-CcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 001307          179 TPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLT-SSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIE  257 (1103)
Q Consensus       179 ~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~l~~  257 (1103)
                      .+|+..+.++|.++++|+ +..||.+|+++++.++.+.+ ++.....|.+++|.++.++...++.++.+....++++|.+
T Consensus       154 ~~~~~~l~~lf~q~~~d~-s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~E  232 (1075)
T KOG2171|consen  154 QPHLDDLLRLFSQTMTDP-SSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIE  232 (1075)
T ss_pred             chhHHHHHHHHHHhccCC-cchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHH
Confidence            999999999999999998 55699999999999999884 4556788999999999999999999999999999999999


Q ss_pred             HHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCc
Q 001307          258 LAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDP  337 (1103)
Q Consensus       258 l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~  337 (1103)
                      +++..|+.+++++.+++++.++++.+++.++.+|..|++++.++++   ++|.+.|+.+++...+++.++.+|.+..+|+
T Consensus       233 l~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e---~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~  309 (1075)
T KOG2171|consen  233 LLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSE---YAPAMCKKLALLGHTLVPVLLAMMTEEEDDD  309 (1075)
T ss_pred             HHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH---hhHHHhhhchhhhccHHHHHHHhcCCcccch
Confidence            9999999999999999999999999999999999999999999999   5999999999999999999999999998889


Q ss_pred             ccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHH
Q 001307          338 LWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE  417 (1103)
Q Consensus       338 ~w~~~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~  417 (1103)
                      +|...|+.|||+ +.+++..|.+++++++.++|++.++|.+++.+..+++|++|+.|+||+++|+.+++||.+.+.++++
T Consensus       310 ew~~~d~~ded~-~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~  388 (1075)
T KOG2171|consen  310 EWSNEDDLDEDD-EETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP  388 (1075)
T ss_pred             hhcccccccccc-ccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            999887666554 5678889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccc
Q 001307          418 QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEIL  497 (1103)
Q Consensus       418 ~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l  497 (1103)
                      +|++.++++++|++|+||++||.++|++++++.|++++.|++.+.|.|+..+.+..+++|+.+|+.++.+|.+.+.++.+
T Consensus       389 ~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l  468 (1075)
T KOG2171|consen  389 KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSIL  468 (1075)
T ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHH
Confidence            99999999999999999999999999999999999988889999999999999977889999999999999999999999


Q ss_pred             cCchHHHHH-HHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhHhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHH
Q 001307          498 TPYLDGIVS-KLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVG  576 (1103)
Q Consensus       498 ~~~l~~ll~-~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~  576 (1103)
                      .||++.+|+ .+.-+++++++.+|+.++.+||++|.+++..|.||++.+||.|.+++.+..+++.+.+|++.++|++.++
T Consensus       469 ~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~  548 (1075)
T KOG2171|consen  469 EPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIA  548 (1075)
T ss_pred             HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHH
Confidence            999999999 5555667788999999999999999999999999999999999999999888889999999999999999


Q ss_pred             HhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhcCCcccchhhhhHHHHHhcccCCCccccCCCC
Q 001307          577 MAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADS  656 (1103)
Q Consensus       577 ~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~i~~~ll~~~~~~~~~~~~~~~~  656 (1103)
                      .+||++.|.|++.++|+.+..++.+..+.|++.++|.+.+|+++|+++|++|.||+|.+||.++++...+|++...|++ 
T Consensus       549 ~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~-  627 (1075)
T KOG2171|consen  549 RAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEE-  627 (1075)
T ss_pred             HHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCch-
Confidence            9999999999999999999998877777889999999999999999999999999999999999999999988777433 


Q ss_pred             CccccCCCCcccchhhcCCc-eeeeechhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHhcccccccCCHHHHHHHHH
Q 001307          657 DNEIEDSDDDSMETITLGDK-RIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVS  735 (1103)
Q Consensus       657 d~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~k~~A~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~  735 (1103)
                       ++.++.++++|++..++|+ .++|+|+.+++|+.||.+|++++..++..|.||++++++..++.+.+++|++||++|+.
T Consensus       628 -d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~  706 (1075)
T KOG2171|consen  628 -DEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAE  706 (1075)
T ss_pred             -hhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence             2233336678888888887 99999999999999999999999999999999999999988888899999999999999


Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHH
Q 001307          736 AMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGP-LLDEGQVRSIVDE  814 (1103)
Q Consensus       736 ~l~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~~~~~~~~~~~  814 (1103)
                      +++.++.+...+...      .|.++++++..+.+.++..+.+|++++++.+++++++++++.+|+ .+.++++..+...
T Consensus       707 ~~p~ll~~~~~A~~~------~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~  780 (1075)
T KOG2171|consen  707 SMPQLLTCALKACQG------GPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGG  780 (1075)
T ss_pred             HHHHHHHHHHHHhcc------ChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHH
Confidence            999999998876533      477999999999999999999999999999999999999999997 4888999999888


Q ss_pred             HHHHHHHHHHhHHHHHHhhcCCCCChHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHhhhhhccCCC
Q 001307          815 IKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDK  894 (1103)
Q Consensus       815 l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~  894 (1103)
                      +...+.....+...|..+...||+|.+++|..+   |.+..+.+.+.+++..+++.+++.|.|+|..++|.+..++.+++
T Consensus       781 ~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~---e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~  857 (1075)
T KOG2171|consen  781 LLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLD---EQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKK  857 (1075)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHh---hhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCC
Confidence            888888877777666655444555555554444   67888999999999999999999999999999999999998777


Q ss_pred             CHHHHHHHHHHHHHHHhhhhhhhhhhHHhHHHHHHH-----------HHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhc
Q 001307          895 TAEERRIAICIFDDVAEQCREAALKYYETYLPFLLE-----------AAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIR  963 (1103)
Q Consensus       895 ~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~-----------~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~  963 (1103)
                      ... |.+++|++++++++||+...+|++.++|.++.           ||+||+|++|+++|..+.|.....++.|..++.
T Consensus       858 ~~~-r~~av~~~~d~ie~~~~a~~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq  936 (1075)
T KOG2171|consen  858 TVA-RQWAVCIFDDLIEGCGEASAKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQ  936 (1075)
T ss_pred             cHH-HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHc
Confidence            777 99999999999999999999999999999987           999999999999999999999999999999999


Q ss_pred             CCCCCChhhhhHHHHHHHHHHHHHhhcCCCCCHhhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhcCCcccCcCcCchh
Q 001307          964 HPNALQPENLMAYDNAVSALGKICQFHRDSIDAAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLP 1043 (1103)
Q Consensus       964 ~~~~~~~~~~~~~~na~~al~~l~~~~~~~~~~~~~l~~~l~~lp~~~D~~e~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 1043 (1103)
                      .+..|.+++..++|||++|++|++.++++.++.++++|.||++||+.+|.+|+...|++|+.|+++++|.+++++++++|
T Consensus       937 ~~~ar~Ee~~~ateNa~gaiaki~~~~~~~i~vdqvl~~~l~~LPl~~D~eEa~~iy~~l~~L~e~n~p~v~~~~n~~ip 1016 (1075)
T KOG2171|consen  937 PPLARTEENRRATENAIGAIAKILLFNPNRIPVDQVLPAWLSWLPLKEDKEEAVPIYTFLSDLYESNHPIVLGPNNQNIP 1016 (1075)
T ss_pred             ChhhhhHHHhHHHHHHHHHHHHHHHhCCccCcHHHHHHHHHHhCCCccchhhhhhHHHHHHHHHHhCCCeeeCCCcccch
Confidence            99999899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCCHHHHHHHHhhhC
Q 001307         1044 KIVSVFAEILCGKDLATEQTLSRIVNLLKQLQQTLPPATLASTWSSLQPQQQLALQSILS 1103 (1103)
Q Consensus      1044 ~i~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 1103 (1103)
                      +|+.+++..+.+......++..|++++++++..  |...|.+++++||+++|++||..+.
T Consensus      1017 ~i~~v~~~~~~~~~~~~~~~~~r~~~ilkq~~~--~~~~~~~~~~~L~~~~~~~lq~~~~ 1074 (1075)
T KOG2171|consen 1017 KILSVCAESLADKKIEPRSTLARVIEILKQFLA--PPSQFAALLATLPPDQQQALQAVLN 1074 (1075)
T ss_pred             HHHHHHHhhhhccCCCccchHHHHHHHHHHHhc--CHHHHHHHHHhCCHHHHHHHHHHhc
Confidence            999999999986655566666699999999987  5555999999999999999999873

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion] Back     alignment and domain information
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair] Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>KOG4524 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>KOG2933 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised Back     alignment and domain information
>PF13251 DUF4042: Domain of unknown function (DUF4042) Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>KOG4524 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF13251 DUF4042: Domain of unknown function (DUF4042) Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] Back     alignment and domain information
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] Back     alignment and domain information
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 Back     alignment and domain information
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>KOG1243 consensus Protein kinase [General function prediction only] Back     alignment and domain information
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 Back     alignment and domain information
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism Back     alignment and domain information
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] Back     alignment and domain information
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2149 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length Back     alignment and domain information
>KOG2933 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 Back     alignment and domain information
>KOG1851 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2137 consensus Protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length Back     alignment and domain information
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) Back     alignment and domain information
>KOG2137 consensus Protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) Back     alignment and domain information
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) Back     alignment and domain information
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair] Back     alignment and domain information
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length Back     alignment and domain information
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2149 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1243 consensus Protein kinase [General function prediction only] Back     alignment and domain information
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] Back     alignment and domain information
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised Back     alignment and domain information
>KOG1837 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM Back     alignment and domain information
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) Back     alignment and domain information
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>smart00288 VHS Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] Back     alignment and domain information
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only] Back     alignment and domain information
>KOG3961 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1848 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins Back     alignment and domain information
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>smart00288 VHS Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ] Back     alignment and domain information
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus Back     alignment and domain information
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>KOG1822 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>KOG1822 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM Back     alignment and domain information
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] Back     alignment and domain information
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes [] Back     alignment and domain information
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor Back     alignment and domain information
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor Back     alignment and domain information
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning] Back     alignment and domain information
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1103
2ot8_A852 Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex Len 1e-04
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex Length = 852 Back     alignment and structure 
Iteration: 1

 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 108/463 (23%), Positives = 176/463 (38%), Gaps = 51/463 (11%)
Query: 140 GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQ-----YIGDTLTPHLKHLHAVFLNCLT 194
            WP+LLP +   + S+     E AF    ++ +        D L   L  +   FL    
Sbjct: 125 NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFK 184
Query: 195 NSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNN--GNXXXXXXXX 252
           +S+ P ++  A+  V  FI   T +         L L + +  E+L    G+        
Sbjct: 185 HSS-PKIRSHAVACVNQFIISRTQA---------LMLHIDSFIENLFALAGDEEPEVRKN 234
Query: 253 XXXXXXXGTEPRFLRR--QLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPG 310
                    E R  R    + ++V  MLQ    +  +E     A EF +TLAE       
Sbjct: 235 VCRALVMLLEVRMDRLLPHMHNIVEYMLQ--RTQDQDENVALEACEFWLTLAEQPICKDV 292
Query: 311 MMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGES--SNYSVGQEC----LDR 364
           ++R LP    +L  +L++ +   + D +    + E    G+   S++++ ++C    LD 
Sbjct: 293 LVRHLP----KLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNL-RKCSAAALDV 347
Query: 365 LAIALGGNTIVPVASEQLPAYLAAPEWXXXXXXXXXXXXXXEGCAKVMVKNLEQVLSMVL 424
           LA  +  + ++P     L   L   EW              EGC + M+  L +++  ++
Sbjct: 348 LA-NVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLI 406
Query: 425 NSFRDPHPRVR----WAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAH 480
               D    VR    W  ++          PD      P +   L   +D   N RVQ  
Sbjct: 407 QCLSDKKALVRSITCW-TLSRYAHWVVSQPPD--TYLKPLMTELLKRILD--SNKRVQEA 461
Query: 481 AASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQK 540
           A SA     E    E L PYL  I+  L+      +         A+ ++ADS   H  K
Sbjct: 462 ACSAFATLEEEACTE-LVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNK 520
Query: 541 --YYDAVMPFL--KAILVNATDKSNRMLRAKSMECISLVGMAV 579
             Y   +MP L  K  ++   DK    L    +EC+S V  A+
Sbjct: 521 PEYIQMLMPPLIQKWNMLKDEDKDLFPL----LECLSSVATAL 559

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1103
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 1e-145
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 1e-125
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 2e-35
1qgr_A876 Protein (importin beta subunit); transport recepto 1e-114
1qgr_A876 Protein (importin beta subunit); transport recepto 5e-17
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 3e-72
2x1g_F971 Cadmus; transport protein, developmental protein, 7e-38
2x19_B963 Importin-13; nuclear transport, protein transport; 4e-35
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 8e-30
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 3e-20
1u6g_C1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 3e-18
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 4e-17
1u6g_C1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 1e-16
1u6g_C1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 3e-14
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 4e-20
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 5e-19
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-18
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 1e-16
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 9e-16
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 3e-13
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 2e-08
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 4e-11
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 7e-10
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 8e-10
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 1e-04
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 4e-04
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 1e-07
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 9e-07
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 4e-06
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 1e-04
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 2e-04
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 1e-07
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 9e-06
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 3e-07
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 2e-06
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 1e-05
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 6e-05
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 4e-07
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 8e-06
2db0_A253 253AA long hypothetical protein; heat repeats, hel 5e-07
2db0_A253 253AA long hypothetical protein; heat repeats, hel 8e-07
2db0_A253 253AA long hypothetical protein; heat repeats, hel 2e-06
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 5e-07
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 2e-06
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 6e-07
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 9e-07
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 1e-05
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 2e-04
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 8e-07
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 2e-06
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 8e-06
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 3e-05
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 1e-06
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 9e-05
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 7e-04
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 2e-06
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 3e-05
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 3e-06
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 4e-06
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 3e-04
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 6e-06
3oqs_A510 Importin subunit alpha-2; importin alpha, karyophe 6e-06
3oqs_A510 Importin subunit alpha-2; importin alpha, karyophe 1e-05
3oqs_A510 Importin subunit alpha-2; importin alpha, karyophe 4e-05
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 2e-05
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 2e-05
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 5e-04
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 3e-05
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 4e-04
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 4e-05
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 7e-04
3nmz_A458 APC variant protein; protein-protein complex, arma 8e-04
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure
 Score =  455 bits (1171), Expect = e-145
 Identities = 143/859 (16%), Positives = 311/859 (36%), Gaps = 59/859 (6%)

Query: 25  ETLISHLMSTSNEQRSEAE-LLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRK 83
           + L + ++S     R  +E  L  L          L    L+  +   E R +AA+ L+ 
Sbjct: 8   QLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKN 67

Query: 84  LLTRDDSF--------LWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNI 135
            L   DS            ++S   ++ +K+  L ++       I+      ++ +A   
Sbjct: 68  ELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALV-SIEPRIANAAAQLIAAIADIE 126

Query: 136 LPENGWPELLPFMFQCVSSDSVK-LQESAFLIFAQLSQYIGDTLTPHLKH----LHAVFL 190
           LP   WPEL+  M     ++  + ++ ++ L    + +         +      L A+  
Sbjct: 127 LPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQ 186

Query: 191 NCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQE 250
              +   +  V++AALNA+ + +  + ++ +    +     +M+ + E+    +      
Sbjct: 187 GAQSTETSKAVRLAALNALADSLIFIKNNME---REGERNYLMQVVCEATQAEDIEVQAA 243

Query: 251 ALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPG 310
           A   L ++      F++  +   +   L IA  +S  +    + +EF  T+ E       
Sbjct: 244 AFGCLCKIMSKYYTFMKPYMEQALY-ALTIATMKSPNDKVASMTVEFWSTICEEEIDIAY 302

Query: 311 MMRKLPQFINRLFAILMSMLLDIEDDPL-WHSAETEDEDAGESSNYSVGQECLDRLAIAL 369
            + + PQ   + +   +S + D+  + L   + + ED +  + +       CL   A   
Sbjct: 303 ELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFA-QN 361

Query: 370 GGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKN-LEQVLSMVLNSFR 428
            GN I+    E +   + A  W+   AA++A   I +G  KV     + Q L  +LN   
Sbjct: 362 CGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMN 421

Query: 429 DPHPRVRWAAINAIGQLSTDLGPDLQNQFH-PQVLPALAGAMDDFQNPRVQAHAASAVLN 487
           D   +V+      IG+++  +   +  Q H P V+ A    + D  +P+V  + +  ++N
Sbjct: 422 DQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQD--HPKVATNCSWTIIN 479

Query: 488 FSENCTPEILTPYLDGIVSKLLVLLQ-----NGKQMVQEGALTALASVADSSQEHFQKYY 542
             E       +P  +   + +  L+      + +   +  A +AL ++ + + +   +  
Sbjct: 480 LVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETS 539

Query: 543 DAVMPFLKAILVNATDKSNRMLRAKS------MECISLVGMAVGKDKFRDDAKQVMEVLM 596
            ++  F+   L          L  +       ++   L  +A    K     + V ++LM
Sbjct: 540 ASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLM 599

Query: 597 SLQGSQMETDDPTT--SYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQ-LKPDVTITS 653
            L    +E  D       +  A + L   LG+ F  Y+    P LL++   +   V+IT+
Sbjct: 600 GLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITA 659

Query: 654 ADSDNEIEDSDDDSM-----ETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFP 708
                +I +S ++         + +  + I    +  E K    ++    A  +   F P
Sbjct: 660 VGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIP 719

Query: 709 WIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNES------YVK 762
           +++ +    V            +A        +  A L    G+  G ++       YV 
Sbjct: 720 YLNDIMALCVAAQNTKPENGTLEAL--DYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVG 777

Query: 763 QLSDFIIPALVEALHKEPDTEICASMLDSLNECI-----QISGPLLDEGQVRSIVDEIKQ 817
            +  FI   + E      +     + +  + +               +  V   +   + 
Sbjct: 778 TIFQFIA-QVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRS 836

Query: 818 VITASSSRKRERAERAKAE 836
                S   ++ A  A+ +
Sbjct: 837 G-QLFSQATKDTARWAREQ 854
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Length = 971 Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963 Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Length = 960 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049 Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Length = 980 Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Length = 1204 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591 Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1103
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 100.0
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 100.0
1qgr_A876 Protein (importin beta subunit); transport recepto 100.0
1u6g_C1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 100.0
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 100.0
2x19_B963 Importin-13; nuclear transport, protein transport; 100.0
2x1g_F971 Cadmus; transport protein, developmental protein, 100.0
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 100.0
1u6g_C1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 100.0
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 100.0
1qgr_A876 Protein (importin beta subunit); transport recepto 100.0
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 100.0
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 100.0
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 100.0
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 100.0
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 100.0
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 100.0
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.97
3a6p_A1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 99.96
2x19_B963 Importin-13; nuclear transport, protein transport; 99.88
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 99.87
2x1g_F971 Cadmus; transport protein, developmental protein, 99.87
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 99.8
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 99.79
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 99.78
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.78
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.76
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 99.73
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 99.73
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 99.7
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 99.7
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 99.7
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 99.69
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 99.69
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.69
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.68
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 99.68
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 99.66
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 99.64
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 99.64
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 99.61
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 99.61
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 99.55
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 99.54
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 99.52
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 99.51
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 99.5
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 99.49
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 99.48
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 99.47
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 99.47
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 99.47
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 99.45
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 99.43
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 99.36
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 99.14
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 99.14
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 99.13
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 99.12
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 99.08
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 99.07
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 99.05
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 99.04
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 99.01
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 99.01
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 98.99
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 98.98
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 98.98
2iw3_A986 Elongation factor 3A; acetylation, ATP-binding, pr 98.97
3nmz_A458 APC variant protein; protein-protein complex, arma 98.94
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 98.9
3nmz_A458 APC variant protein; protein-protein complex, arma 98.89
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 98.86
2db0_A253 253AA long hypothetical protein; heat repeats, hel 98.78
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 98.76
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 98.75
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 98.74
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 98.74
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 98.74
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 98.68
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 98.67
2db0_A253 253AA long hypothetical protein; heat repeats, hel 98.58
4gmo_A684 Putative uncharacterized protein; ARM, heat, solen 98.57
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 98.55
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 98.51
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 98.4
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 98.39
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 98.34
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 98.3
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 98.28
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 98.24
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 98.19
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 98.14
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 98.12
1vsy_5997 Proteasome activator BLM10; 20S proteasome BLM10, 98.12
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 98.11
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 98.0
3oc3_A800 Helicase MOT1, MOT1; regulation of transcription, 97.99
3oc3_A800 Helicase MOT1, MOT1; regulation of transcription, 97.85
3grl_A651 General vesicular transport factor P115; vesicle t 97.77
1vsy_5997 Proteasome activator BLM10; 20S proteasome BLM10, 97.67
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 97.63
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 97.51
4gmo_A684 Putative uncharacterized protein; ARM, heat, solen 97.47
3grl_A651 General vesicular transport factor P115; vesicle t 97.41
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 97.31
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 97.1
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 96.37
1vsy_4799 Proteasome activator BLM10; 20S proteasome BLM10, 96.13
1upk_A341 MO25 protein; transferase, armadillo; HET: MSE; 1. 95.82
4atg_A196 TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton 95.72
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 95.69
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 94.87
1vsy_4799 Proteasome activator BLM10; 20S proteasome BLM10, 94.8
1w9c_A321 CRM1 protein, exportin 1; nuclear protein, nuclear 94.75
4atg_A196 TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton 94.67
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 94.66
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 93.75
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 93.31
1ho8_A480 Vacuolar ATP synthase subunit H; heat repeat, hydr 93.13
3fga_B403 Serine/threonine-protein phosphatase 2A 56 kDa RE 91.96
2npp_B449 PP2A, B subunit, serine/threonine-protein phosphat 90.89
2npp_B449 PP2A, B subunit, serine/threonine-protein phosphat 89.34
1x5b_A163 Signal transducing adaptor molecule 2; VHS domain, 88.38
3ldz_A140 STAM-1, signal transducing adapter molecule 1; ubi 88.05
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 86.48
1lsh_A1056 Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro 86.29
1juq_A171 ADP-ribosylation factor binding protein GGA3; prot 86.2
1lsh_A1056 Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro 84.28
1lrv_A244 LRV, leucine-rich repeat variant; leucine-rich rep 84.17
1w9c_A321 CRM1 protein, exportin 1; nuclear protein, nuclear 83.71
3fga_B403 Serine/threonine-protein phosphatase 2A 56 kDa RE 83.05
3ldz_A140 STAM-1, signal transducing adapter molecule 1; ubi 82.19
2jak_A392 Serine/threonine-protein phosphatase 2A 56 kDa RE 82.03
3dad_A339 FH1/FH2 domain-containing protein 1; formin, FHOD1 81.41
3g2s_A149 C-terminal fragment of sortilin-related receptor; 81.36
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
Probab=100.00  E-value=1.3e-64  Score=635.12  Aligned_cols=810  Identities=18%  Similarity=0.263  Sum_probs=662.0

Q ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHc--cCCChhHHHHHHHHHHHhcccCCCCccccCCHH
Q 001307           22 APFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQ--RSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH   99 (1103)
Q Consensus        22 ~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~--~~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~   99 (1103)
                      +++.++|++++|||+++|++||++|+++++ +|+ +...|.+++.  ++.++.+|++|++.||+.+.++    |..++++
T Consensus        13 ~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~-~p~-~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~----w~~~~~~   86 (852)
T 4fdd_A           13 QQILQLLKESQSPDTTIQRTVQQKLEQLNQ-YPD-FNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAH----FQNFPNG   86 (852)
T ss_dssp             HHHHHHHHHHTCSCHHHHHHHHHHHHHHTT-SHH-HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTS----GGGCCHH
T ss_pred             HHHHHHHHHHhCcCHHHHHHHHHHHHHHHh-CCC-HHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHc----cCCCCHH
Confidence            457778888899999999999999999987 676 4688999998  4788999999999999999887    9999999


Q ss_pred             HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhch
Q 001307          100 TQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLT  179 (1103)
Q Consensus       100 ~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l~  179 (1103)
                      .+..+|+.+++.|.+ +++.+|+.++.+++.+++.+++ +.||+++|.+.+.++++++..|++++.+++.+++..++.+.
T Consensus        87 ~~~~ik~~ll~~l~~-~~~~vr~~~a~~i~~ia~~~~~-~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~  164 (852)
T 4fdd_A           87 VTDFIKSECLNNIGD-SSPLIRATVGILITTIASKGEL-QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILD  164 (852)
T ss_dssp             HHHHHHHHHHTTTTC-SSHHHHHHHHHHHHHHHHHTTT-TTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHhcCc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhc
Confidence            999999999999986 6889999999999999998855 89999999999999999999999999999999998776543


Q ss_pred             -----hhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 001307          180 -----PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALEL  254 (1103)
Q Consensus       180 -----~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~  254 (1103)
                           ..++.+++.+.++++++ +..||..|++++..++...     ...+...++.+++.+...++++++++|..++++
T Consensus       165 ~~~~~~~~~~il~~l~~~l~~~-~~~vR~~A~~aL~~~~~~~-----~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~  238 (852)
T 4fdd_A          165 SDVLDRPLNIMIPKFLQFFKHS-SPKIRSHAVACVNQFIISR-----TQALMLHIDSFIENLFALAGDEEPEVRKNVCRA  238 (852)
T ss_dssp             HCSSSSCHHHHHHHHTTTTTCS-SHHHHHHHHHHHHTTTTTT-----CHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred             hhhhcchHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcc-----cHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence                 24788999999999997 9999999999998776542     123455677788888888888999999999999


Q ss_pred             HHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCC
Q 001307          255 LIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIE  334 (1103)
Q Consensus       255 l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~  334 (1103)
                      |..+++.+++.+.+++..+++.++..+.+  .++.+|..|+++|..+++.    +...+...+++..++|.++..|.+.+
T Consensus       239 L~~l~~~~~~~~~~~l~~l~~~l~~~~~~--~~~~vr~~a~e~l~~l~~~----~~~~~~~~~~~~~l~p~ll~~l~~~e  312 (852)
T 4fdd_A          239 LVMLLEVRMDRLLPHMHNIVEYMLQRTQD--QDENVALEACEFWLTLAEQ----PICKDVLVRHLPKLIPVLVNGMKYSD  312 (852)
T ss_dssp             HHHHHHHCHHHHGGGHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHTTS----TTHHHHHTTTHHHHHHHHHHHTSCCH
T ss_pred             HHHHHHhCHHHHHHHHHHHHHHHHHHccC--CcHHHHHHHHHHHHHHhcc----hhHHHHHHHHHHHHHHHHHHHcCCcH
Confidence            99999999999999999999999998854  5789999999999999873    11112245788999999999998776


Q ss_pred             CCcccccCC-CCCccc----cCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcH
Q 001307          335 DDPLWHSAE-TEDEDA----GESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCA  409 (1103)
Q Consensus       335 ~~~~w~~~~-~e~ed~----~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~  409 (1103)
                      ++..|...+ ++|+++    ..+..+.++..+++.++...| +.+++.+++.+.+.+++++|+.|++|+.+++.++++++
T Consensus       313 ~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~-~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~  391 (852)
T 4fdd_A          313 IDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR-DELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCM  391 (852)
T ss_dssp             HHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTH
T ss_pred             hHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcch
Confidence            666675433 111111    345667789999999999998 78999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHH
Q 001307          410 KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFS  489 (1103)
Q Consensus       410 ~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~  489 (1103)
                      +.+.++++.+++.+...++|+++.||.+|++++|++++++++.....|+..+++.+++.+.+ +++.||..|+++|..++
T Consensus       392 ~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d-~~~~vr~~a~~aL~~l~  470 (852)
T 4fdd_A          392 QGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILD-SNKRVQEAACSAFATLE  470 (852)
T ss_dssp             HHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHH
Confidence            98889999999999999999999999999999999999886644467899999999999998 88999999999999999


Q ss_pred             hcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhH--hhHhhhhHHHHHHHhhcCCcccchhhhH
Q 001307          490 ENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQ--KYYDAVMPFLKAILVNATDKSNRMLRAK  567 (1103)
Q Consensus       490 ~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~~~~~~~~~--~~~~~i~~~l~~~l~~~~~~~~~~lr~~  567 (1103)
                      +.++.. +.||++.+++.|...+++.+......++.+++.++...+..+.  +|++.++|.+.+.+....+. ...++  
T Consensus       471 ~~~~~~-l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~-~~~~~--  546 (852)
T 4fdd_A          471 EEACTE-LVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDE-DKDLF--  546 (852)
T ss_dssp             HHHGGG-GGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTT-CTTHH--
T ss_pred             HHhhHh-hHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccc-cHHHH--
Confidence            998866 7899999999999999988777777899999999999887764  59999999888776442221 11111  


Q ss_pred             HHHHHHHHHHhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHhHhcCCcccchhhhhHHHHHhcccCC
Q 001307          568 SMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKP  647 (1103)
Q Consensus       568 a~~~l~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~i~~~ll~~~~~~~  647 (1103)
                                                                  .++++++.++..+|..|.||++.+++.+++.+.   
T Consensus       547 --------------------------------------------~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~---  579 (852)
T 4fdd_A          547 --------------------------------------------PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQ---  579 (852)
T ss_dssp             --------------------------------------------HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHH---
T ss_pred             --------------------------------------------HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH---
Confidence                                                        233344444444444444444433333222210   


Q ss_pred             CccccCCCCCccccCCCCcccchhhcCCceeeeechhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHhcccccccCCH
Q 001307          648 DVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHE  727 (1103)
Q Consensus       648 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~~~~  727 (1103)
                                                                                                 ..   
T Consensus       580 ---------------------------------------------------------------------------~~---  581 (852)
T 4fdd_A          580 ---------------------------------------------------------------------------KT---  581 (852)
T ss_dssp             ---------------------------------------------------------------------------HH---
T ss_pred             ---------------------------------------------------------------------------HH---
Confidence                                                                                       00   


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHH
Q 001307          728 EVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQ  807 (1103)
Q Consensus       728 ~vr~~a~~~l~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~  807 (1103)
                                  +....                             .. ..+                            
T Consensus       582 ------------l~~~~-----------------------------~~-~~~----------------------------  591 (852)
T 4fdd_A          582 ------------LAQAM-----------------------------LN-NAQ----------------------------  591 (852)
T ss_dssp             ------------HHHHH-----------------------------HH-HHC----------------------------
T ss_pred             ------------HHHHH-----------------------------Hh-hcC----------------------------
Confidence                        00000                             00 000                            


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCChHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhH--HHHHHh
Q 001307          808 VRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFF--DELSSY  885 (1103)
Q Consensus       808 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~l~~~  885 (1103)
                                                 .+..++           .+.+++..+.++++.+++..|+.+.||+  ..+++.
T Consensus       592 ---------------------------~~~~~~-----------~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~  633 (852)
T 4fdd_A          592 ---------------------------PDQYEA-----------PDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTL  633 (852)
T ss_dssp             ---------------------------TTTSCC-----------CCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHH
T ss_pred             ---------------------------CcccCC-----------CcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHH
Confidence                                       000000           0012455678888899999999999998  569999


Q ss_pred             hhhhccCCCCHHHHHHHHHHHHHHHhhhhhhhhhhHHhHHHHHHH-----------HHHHHHHHHHhhcCCCchHHHHHH
Q 001307          886 LTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLE-----------AAVYGLGVCAEFGGSVVKPLVGEA  954 (1103)
Q Consensus       886 l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~-----------~a~~~lg~l~~~~~~~~~~~~~~~  954 (1103)
                      +..++ .+..+.+|..++.+++++++++|..+.+|++.++|.+.+           +|++++|.++...+..+.||+..+
T Consensus       634 l~~~l-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~i  712 (852)
T 4fdd_A          634 MYQCM-QDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMV  712 (852)
T ss_dssp             HHHHT-TCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHH
T ss_pred             HHHHh-CCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHHHHH
Confidence            99988 456789999999999999999999999999999999887           899999999999988999999999


Q ss_pred             HHHHHHhhcCCCCCChhhhhHHHHHHHHHHHHHhhcCCCC--CHhhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhcCC
Q 001307          955 LSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSI--DAAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDS 1032 (1103)
Q Consensus       955 l~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~~~--~~~~~l~~~l~~lp~~~D~~e~~~~~~~l~~l~~~~~~ 1032 (1103)
                      ++.|.+++..++    ....+++|++.|+||+...+|+.+  .++++++.|+..||..+|.+|...+|++||.+++.+|+
T Consensus       713 l~~L~~~l~~~~----~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~  788 (852)
T 4fdd_A          713 LHQLVEIINRPN----TPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPS  788 (852)
T ss_dssp             HHHHHHHHTCSS----CCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGG
T ss_pred             HHHHHHHhCCCC----CCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChH
Confidence            999999998763    256899999999999999998866  37999999999999999999999999999999999887


Q ss_pred             cccCcCcCchhHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCCHHHHHHHHhhhC
Q 001307         1033 DLLGPNHQYLPKIVSVFAEILCGKDLATEQTLSRIVNLLKQLQQTLPPATLASTWSSLQPQQQLALQSILS 1103 (1103)
Q Consensus      1033 ~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 1103 (1103)
                      .+.+    ++..+...+++    ....+.+.+..+.+++..+.+..|+..|++++++|||+.|++|++.++
T Consensus       789 ~~~~----~~~~~~~~~~~----~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  851 (852)
T 4fdd_A          789 GVIQ----DFIFFCDAVAS----WINPKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAFYG  851 (852)
T ss_dssp             GTGG----GHHHHHHHHHT----CSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTSC
T ss_pred             hHHH----HHHHHHHHHHh----cCCCCHHHHHHHHHHHHHHHHhCCchhHHHHHHhCCHHHHHHHHHHhC
Confidence            6654    34444444333    233468999999999999999998777999999999999999998764
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5 Back     alignment and structure
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* Back     alignment and structure
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae} Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5 Back     alignment and structure
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19 Back     alignment and structure
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae} Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 Back     alignment and structure
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* Back     alignment and structure
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B Back     alignment and structure
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 Back     alignment and structure
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* Back     alignment and structure
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 Back     alignment and structure
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Back     alignment and structure
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19 Back     alignment and structure
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* Back     alignment and structure
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 Back     alignment and structure
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} Back     alignment and structure
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1103
d2bpta1861 a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( 6e-76
d1qgra_876 a.118.1.1 (A:) Importin beta {Human (Homo sapiens) 4e-66
d1qbkb_888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 3e-60
d1qbkb_888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 5e-27
d1ibrb_458 a.118.1.1 (B:) Importin beta {Human (Homo sapiens) 3e-47
d1ibrb_458 a.118.1.1 (B:) Importin beta {Human (Homo sapiens) 1e-05
d1wa5c_959 a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc 9e-40
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 3e-23
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 6e-18
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 5e-17
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 3e-09
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 6e-13
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 3e-05
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 1e-04
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 3e-04
d1q1sc_434 a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus 1e-11
d2vglb_579 a.118.1.10 (B:) Adaptin beta subunit N-terminal fr 9e-08
d2vglb_579 a.118.1.10 (B:) Adaptin beta subunit N-terminal fr 6e-06
d1wa5b_503 a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S 4e-07
d2vgla_584 a.118.1.10 (A:) Adaptin alpha C subunit N-terminal 7e-07
d2vgla_584 a.118.1.10 (A:) Adaptin alpha C subunit N-terminal 2e-04
d1jdha_529 a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) 6e-04
d1jdha_529 a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) 0.001
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  267 bits (681), Expect = 6e-76
 Identities = 136/861 (15%), Positives = 306/861 (35%), Gaps = 63/861 (7%)

Query: 25  ETLISHLMSTSNEQRSEAE-LLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRK 83
           + L + ++S     R  +E  L  L          L    L+  +   E R +AA+ L+ 
Sbjct: 8   QLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKN 67

Query: 84  LLTRDDS--------FLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNI 135
            L   DS            ++S   ++ +K+  L ++       I+      ++ +A   
Sbjct: 68  ELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALV-SIEPRIANAAAQLIAAIADIE 126

Query: 136 LPENGWPELLPFMFQCVSS-DSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCL- 193
           LP   WPEL+  M     +     ++ ++ L    + +         +   + + +  + 
Sbjct: 127 LPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQ 186

Query: 194 ---TNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQE 250
              +   +  V++AALNA+ + +  + ++ +R+  ++    +M+ + E+    +      
Sbjct: 187 GAQSTETSKAVRLAALNALADSLIFIKNNMEREGERN---YLMQVVCEATQAEDIEVQAA 243

Query: 251 ALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPG 310
           A   L ++      F++  +   +   L IA  +S  +    + +EF  T+ E       
Sbjct: 244 AFGCLCKIMSKYYTFMKPYMEQAL-YALTIATMKSPNDKVASMTVEFWSTICEEEIDIAY 302

Query: 311 MMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALG 370
            + + PQ   + +   +S + D+  + L       ++   +  N S+      +L     
Sbjct: 303 ELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNC 362

Query: 371 GNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKN-LEQVLSMVLNSFRD 429
           GN I+    E +   + A  W+   AA++A   I +G  KV     + Q L  +LN   D
Sbjct: 363 GNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMND 422

Query: 430 PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFS 489
              +V+      IG+++  +   +  Q H   +           +P+V  + +  ++N  
Sbjct: 423 QSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQ-DHPKVATNCSWTIINLV 481

Query: 490 ENCTPEILTPYLDGIVSKLLVLLQNGKQ-----MVQEGALTALASVADSSQEHFQKYYDA 544
           E       +P  +   + +  L+    +       +  A +AL ++ + + +   +   +
Sbjct: 482 EQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSAS 541

Query: 545 VMPFLKAILVNATDKSNRMLRAKS------MECISLVGMAVGKDKFRDDAKQVMEVLMSL 598
           +  F+   L          L  +       ++   L  +A    K     + V ++LM L
Sbjct: 542 ISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGL 601

Query: 599 QGSQMETDDPTT--SYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQ-LKPDVTITSAD 655
               +E  D       +  A + L   LG+ F  Y+    P LL++   +   V+IT+  
Sbjct: 602 FFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVG 661

Query: 656 SDNEIEDSDDDSM-----ETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWI 710
              +I +S ++         + +  + I    +  E K    ++    A  +   F P++
Sbjct: 662 FIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYL 721

Query: 711 DQVAPTLVPLLKFYFH----------EEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESY 760
           + +    V                   +V +A + A   ++       E  L P     Y
Sbjct: 722 NDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEA-LFP-----Y 775

Query: 761 VKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISG-----PLLDEGQVRSIVDEI 815
           V  +  FI     +      +     + +  + +   +           +  V   +   
Sbjct: 776 VGTIFQFIAQVAEDPQL-YSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRT 834

Query: 816 KQVITASSSRKRERAERAKAE 836
           +      S   ++ A  A+ +
Sbjct: 835 RS-GQLFSQATKDTARWAREQ 854
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1103
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 100.0
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 100.0
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 100.0
d1u6gc_1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 100.0
d1u6gc_1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 100.0
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.98
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 99.97
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.96
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.95
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.95
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.93
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.68
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 99.63
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.63
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.6
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.36
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.36
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 99.3
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 99.26
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 99.25
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 99.14
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 99.12
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 99.11
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 98.56
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 98.5
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 98.5
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 98.43
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 98.4
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 98.34
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 97.95
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 97.67
d1ho8a_477 Regulatory subunit H of the V-type ATPase {Baker's 96.76
d1upka_330 Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} 96.43
d1w9ca_321 Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax 94.31
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 93.77
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 92.46
d1upka_330 Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} 92.15
d1w9ca_321 Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax 90.78
d2jaka1343 Serine/threonine-protein phosphatase 2A regulatory 86.11
d1dvpa1145 Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 85.66
d1ho8a_477 Regulatory subunit H of the V-type ATPase {Baker's 85.64
d1dvpa1145 Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 85.02
d2jaka1343 Serine/threonine-protein phosphatase 2A regulatory 81.56
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.4e-63  Score=621.56  Aligned_cols=810  Identities=18%  Similarity=0.248  Sum_probs=627.0

Q ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc--CCChhHHHHHHHHHHHhcccCCCCccccCCHH
Q 001307           22 APFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR--SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH   99 (1103)
Q Consensus        22 ~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~--~~~~~~R~~a~~~L~~~i~~~~~~~w~~l~~~   99 (1103)
                      +++.++|++.+|||+++|++|+++|+++.+ +|+. ..+|..++.+  +.+..+|++|+++||+.+.++    |..++++
T Consensus        11 ~ql~~~L~~~~s~d~~~r~~A~~~L~~~~~-~p~~-~~~L~~ll~~~~~~~~~~R~~A~i~Lkn~i~~~----w~~~~~~   84 (888)
T d1qbkb_          11 QQILQLLKESQSPDTTIQRTVQQKLEQLNQ-YPDF-NNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAH----FQNFPNG   84 (888)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHTTSTTTSTT-STTT-TTCTTSSSTTTSCSTTTHHHHTTGGGGGTHHHH----TTCSTTT
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHh-CCCH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh----hccCCHH
Confidence            466777888889999999999999999987 6864 4667777764  556789999999999999887    9999999


Q ss_pred             HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCHhHHHHHHHHHHHhhhhhhhhc-
Q 001307          100 TQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTL-  178 (1103)
Q Consensus       100 ~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~l-  178 (1103)
                      .++.||+.++++|.+ +++.+|+.++.+++.+++.+.+ +.||+++|.|.+.+.++++..+++++.+++.+++.....+ 
T Consensus        85 ~~~~Ik~~ll~~l~~-~~~~vr~~~~~~i~~i~~~~~~-~~Wpell~~L~~~l~s~~~~~~~~al~~L~~i~e~~~~~~~  162 (888)
T d1qbkb_          85 VTDFIKSECLNNIGD-SSPLIRATVGILITTIASKGEL-QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILD  162 (888)
T ss_dssp             CCHHHHHHHTTGGGC-CCSSTTTTTTTTTHHHHTTTSS-CSSTTTSTTTTTSSTGGGSSCSSSSSTTTHHHHGGGHHHHH
T ss_pred             HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhCc-cchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhh
Confidence            999999999999986 6899999999999999997766 7899999999999999888899999999999998755432 


Q ss_pred             ----hhhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 001307          179 ----TPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALEL  254 (1103)
Q Consensus       179 ----~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ip~ll~~l~~~l~~~~~~~~~~~~~~  254 (1103)
                          ....+.+++.+.++++++ ++.+|..|++++..++....     ..+...++.+++.+.....++++++|..++.+
T Consensus       163 ~~~~~~~~~~ll~~ll~~~~~~-~~~vr~~al~~l~~~~~~~~-----~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~  236 (888)
T d1qbkb_         163 SDVLDRPLNIMIPKFLQFFKHS-SPKIRSHAVACVNQFIISRT-----QALMLHIDSFTENLFALAGDEEPEVRKNVCRA  236 (888)
T ss_dssp             TC---CCSTTTTHHHHTGGGSS-SSCSSSTTTHHHHGGGGCCC-----STTCSHHHHCSHHHHTTSSCCCSSSTTHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHhhCC-CHHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence                224566888999999997 88999999999987765432     12234455677777777778888999999999


Q ss_pred             HHHHHccchHHHHHhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCC
Q 001307          255 LIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIE  334 (1103)
Q Consensus       255 l~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~  334 (1103)
                      |..+++.++..+.+++..+++.++....  +.++++|..|+++|..+++....    .....+++..++|.+...+.+.+
T Consensus       237 l~~l~~~~~~~l~~~l~~i~~~~l~~~~--~~~e~v~~~a~ef~~~~~e~~~~----~~~~~~~l~~l~~~l~~~~~~~~  310 (888)
T d1qbkb_         237 LVMLLEVRMDRLLPHMHNIVEYMLQRTQ--DQDENVALEACEFWLTLAEQPIC----KDVLVRHLPKLIPVLVNGMKYSD  310 (888)
T ss_dssp             TTTTSCSCTTTTTTTTTTTTTTTTTTTT--SSCHHHHHHHHHHHCCCCSGGGG----TTTTTTSTTTTTTTTTTSSCCSS
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHHhhcch
Confidence            9999999999999999999988876553  45789999999999988863211    11223455555555544443221


Q ss_pred             CC--------cccc--------------------------------c---CCCCCccccCCCchhhHHHHHHHHHHHcCC
Q 001307          335 DD--------PLWH--------------------------------S---AETEDEDAGESSNYSVGQECLDRLAIALGG  371 (1103)
Q Consensus       335 ~~--------~~w~--------------------------------~---~~~e~ed~~~~~~~~~a~~~l~~l~~~~~~  371 (1103)
                      .+        ..|.                                .   ..++++..++++.++++..+++.++..+| 
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~~-  389 (888)
T d1qbkb_         311 IDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYR-  389 (888)
T ss_dssp             TTHHHHTTTSSCCTTSCCCGGGCCCCCCCCCCCCCCCTTC-----CHHHHTTCCCSTTSCCSSHHHHHHHSTTTTTTCC-
T ss_pred             HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhhHhhhhH-
Confidence            11        0000                                0   00011112345667788899999998887 


Q ss_pred             CcchHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhhhhhch
Q 001307          372 NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP  451 (1103)
Q Consensus       372 ~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~  451 (1103)
                      +.+++.+++.+.+.+++++|+.|++|+.++|.+++++.+.+.++++++++.++..++|+++.||.+++|+||++++++.+
T Consensus       390 ~~il~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~  469 (888)
T d1qbkb_         390 DELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVS  469 (888)
T ss_dssp             SSSHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHS
T ss_pred             HHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhh
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999998877


Q ss_pred             hHHhhhhhhhHHHHHhhccCCCCcchHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 001307          452 DLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVA  531 (1103)
Q Consensus       452 ~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ll~~L~~~l~~~~~~v~~~al~al~~l~  531 (1103)
                      .....|+..+++.++..+.| ++++|+.+||++|..+++..+.. +.||++.+++.+...++......+..++.++++++
T Consensus       470 ~~~~~~~~~~l~~ll~~l~d-~~~~V~~~a~~al~~l~~~~~~~-l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~  547 (888)
T d1qbkb_         470 QPPDTYLKPLMTELLKRILD-SNKRVQEAACSAFATLEEEACTE-LVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLA  547 (888)
T ss_dssp             SCHHHHTTTHHHHHHHHHSS-SCHHHHHHHHHHHHHHHHHHTTS-SGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhhhh-hhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            66567899999999999999 89999999999999999998865 78999999999999999888888888899999998


Q ss_pred             Hhhhhhh--HhhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHhcCCCCCCCch
Q 001307          532 DSSQEHF--QKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPT  609 (1103)
Q Consensus       532 ~~~~~~~--~~~~~~i~~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~  609 (1103)
                      ...+..+  .+|++.++|.+...+....+.+  ..+...++                                       
T Consensus       548 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~--~~~~~~le---------------------------------------  586 (888)
T d1qbkb_         548 DSVGHHLNKPEYIQMLMPPLIQKWNMLKDED--KDLFPLLE---------------------------------------  586 (888)
T ss_dssp             HHHGGGGCSHHHHHHHHHHHHHHHTTSCTTC--TTHHHHHH---------------------------------------
T ss_pred             HhhhccccchHHHHHHHHHHHHHHHhcccch--HHHHHHHH---------------------------------------
Confidence            8877655  3566777776666554322111  01112233                                       


Q ss_pred             hhHHHHHHHHHHhHhcCCcccchhhhhHHHHHhcccCCCccccCCCCCccccCCCCcccchhhcCCceeeeechhHHHHH
Q 001307          610 TSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKA  689 (1103)
Q Consensus       610 ~~~~~~~~~~l~~~~~~~~~p~l~~i~~~ll~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~  689 (1103)
                            +++.++..+|..|.||.+.+++.+++.+..                                            
T Consensus       587 ------~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~--------------------------------------------  616 (888)
T d1qbkb_         587 ------CLSSVATALQSGFLPYCEPVYQRCVNLVQK--------------------------------------------  616 (888)
T ss_dssp             ------HHHHHHHHSTTTTHHHHHHHHHHHHHHHHH--------------------------------------------
T ss_pred             ------HHHHHHHHhHHHHhhhHHHHHHHHHHHHHH--------------------------------------------
Confidence                  333333333333333333222222111100                                            


Q ss_pred             HHHHHHHHHHHHhhhhccccHHHHHHHhcccccccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Q 001307          690 TACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFII  769 (1103)
Q Consensus       690 ~A~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~i~  769 (1103)
                                                                       .+....... ..+                  
T Consensus       617 -------------------------------------------------~l~~~~~~~-~~~------------------  628 (888)
T d1qbkb_         617 -------------------------------------------------TLAQAMLNN-AQP------------------  628 (888)
T ss_dssp             -------------------------------------------------HHHHHHHHH-HCT------------------
T ss_pred             -------------------------------------------------HHHHHHHHh-ccc------------------
Confidence                                                             000000000 000                  


Q ss_pred             HHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCChHhhhhhhhh
Q 001307          770 PALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEE  849 (1103)
Q Consensus       770 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~  849 (1103)
                           .....++                                                                    
T Consensus       629 -----~~~~~~~--------------------------------------------------------------------  635 (888)
T d1qbkb_         629 -----DQYEAPD--------------------------------------------------------------------  635 (888)
T ss_dssp             -----TTSCCCC--------------------------------------------------------------------
T ss_pred             -----ccccchh--------------------------------------------------------------------
Confidence                 0000000                                                                    


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhhchhhhHHH--HHHhhhhhccCCCCHHHHHHHHHHHHHHHhhhhhhhhhhHHhHHHH
Q 001307          850 NEQEEEVFDQVGEILGTLIKTFKAAFLPFFDE--LSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPF  927 (1103)
Q Consensus       850 ~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~--l~~~l~~~l~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~l~~  927 (1103)
                          ..++..+.++++.+++..|..+.+++..  +++.+..++ ++..+.+|..+++++|++.+.++..+.+|++.++|.
T Consensus       636 ----~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l-~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~~~~~~  710 (888)
T d1qbkb_         636 ----KDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCM-QDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPI  710 (888)
T ss_dssp             ----THHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHh-CCCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence                0123334455555666666666665543  667777766 567889999999999999999999999999999999


Q ss_pred             HHH-----------HHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCCCChhhhhHHHHHHHHHHHHHhhcCCCC--
Q 001307          928 LLE-----------AAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSI--  994 (1103)
Q Consensus       928 l~~-----------~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~~~--  994 (1103)
                      ++.           +|+|++|.++...+..+.||++.+++.|.++++.++    ....+++|++.|+||+...+|+.+  
T Consensus       711 l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~~~il~~L~~il~~~~----~~~~v~~n~~~~lgrl~~~~p~~~~~  786 (888)
T d1qbkb_         711 LGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPN----TPKTLLENTAITIGRLGYVCPQEVAP  786 (888)
T ss_dssp             HHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGSHHHHHHHHHHHTCTT----CCHHHHHHHHHHHHHHHHHCHHHHGG
T ss_pred             HHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCC----ccHHHHHHHHHHHHHHHHHCHHHHHh
Confidence            987           899999999999999999999999999999998764    356799999999999999999876  


Q ss_pred             CHhhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhcCCcccCcCcCchhHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Q 001307          995 DAAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILCGKDLATEQTLSRIVNLLKQL 1074 (1103)
Q Consensus       995 ~~~~~l~~~l~~lp~~~D~~e~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~l~~l 1074 (1103)
                      .++++++.|+.+||..+|.+|+..+|.+||.+++.+|+.+.+    +++.++.++++.    ...+++++..+.++|..+
T Consensus       787 ~l~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p~~~~~----~l~~~~~~i~~~----~~~~~~~~~~~~~~l~~~  858 (888)
T d1qbkb_         787 MLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQ----DFIFFCDAVASW----INPKDDLRDMFCKILHGF  858 (888)
T ss_dssp             GGGGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCGGGTGG----GHHHHHHHHTTC----SSCCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHCcHHHHH----HHHHHHHHHHhc----CCCCHHHHHHHHHHHHHH
Confidence            478999999999999999999999999999999999887765    577666665542    224688999999999999


Q ss_pred             HhhCChhhHHHHHhcCCHHHHHHHHhhhC
Q 001307         1075 QQTLPPATLASTWSSLQPQQQLALQSILS 1103 (1103)
Q Consensus      1075 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 1103 (1103)
                      .+.+|+..|++++++|||+.|++|++.++
T Consensus       859 ~~~~~~~~w~~~~~~~~~~~~~~l~~~y~  887 (888)
T d1qbkb_         859 KNQVGDENWRRFSDQFPLPLKERLAAFYG  887 (888)
T ss_dssp             HHHHCHHHHHHHHHSSCHHHHHHHHHHCC
T ss_pred             HHHcCcHhHHHHHHcCCHHHHHHHHHhhC
Confidence            99999878999999999999999999875
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure