Citrus Sinensis ID: 001313

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100--
Protein Sequence
MGGSKSKMVVMFVLLLIIFEGGWSEGCLNHERFALLQLKLFFIDPYNYLLDWVDDEGATDCCQWERVSCNNTMGRVVVLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICISPTTMPEASPSNEGDNNLIDMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEMWTTSCYYFVIDNLIPTRFCH
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccccccccccccccccccccccccEEEccccccEEEEEccccccccccccccccccccccccEEEcccccccccccccccccccccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHcccccccEEEcccccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHcccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccccEEEccccccccccccccccccccccccEEEccccccccccccHHHHHHccccccEEEccccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccEEEccccccEEEccHHcccccccccEEEcccccccEEcccccccccccccccEEEccccccccccccHHccccccccEEEcccccccccccHHHHHccccccEEEccccccEEEccccccccccccEEEccccEEEEEcccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEccccEEcccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEEcccccccccccEEEccccccEEcccHHHHHccccccEEEcccccccccccHHHHccccccEEEccccEEEEcccccccccccccEEEcccccccccccHHHHHHccccccccccccccccccEEEcccccccccccEEEEEEEEEcccEEEEccccccccEEEEcccccccccccHHHHccccccccccccccccccccccccccccccEEccccccccccccHHHHcccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEHHHHHHHHHHHHEEEEEEEcccHHHHHHHHHHHHccEEEEEEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccccccccccccccccEEEEEEcccccEEEEEEccccccccccccccHHHcccHcccEEEcccccccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHHHccccccEEEcccccccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHccccccEEEccccccccccccHHHHccccccEEEEccccccccccccHHHccccccEEEEEccccccccccHHHcccccccEEEEEEcccccccccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHccccccEEEEccccccccccHHHHccccccEEEEEccccccccccHHHccccccccEEEEEccccccccccccHHHHccccccEEEcccccccccccHHHHHHcccccEEEEccccccccccHHHcccccccEEEEccccccccccHHHHHHHHcccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHHcccccEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHcccccEEEEccccccccccccHccccccEEEEEccccccccccHHHHccccccEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHcccHHHHHHccccccccccccHHHccccccccccccEEEEEcccccccccccHHHHHHccEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MGGSKSKMVVMFVLLLIIFeggwsegclnHERFALLQLKLFfidpynylldwvddegatdccqwervscnntmGRVVVLDlsqthrgeywylnaslftpfqqlesldlrdndiagcveneglerlsrlSNLKMLNLVGNLFNNSILSSLARLssltsldlsanrlkgsidikeldslrdleklnigrnmidkfvvskgpkrlsrlnnlkvfdlsgnlfnnSILSSLARLSSLRSLLLydnrlegsidvkefdslsnleeldmsyneidnfevpqacsglrklSYLHLLRVGIRDGSKLlqsmgsfpslntldlsynnftetvttttqgfphfksLKELYMDDARIALNTSFLQIIGesmpsiqylslsnssvsnnsrtldqglcplvhlqelhmadndlrgslpwclanmtslrildvssnqligsisssplihltsiedlilsdnhfqipisleplfnhsrlkifdaENNEINAEIIeshslttpnFQLQSLLLssgyrdgitfpkflynqhdleyVRLSHIKmneefpnwllenntklrQLSLvndslvgpfrlpihshkqlrlldvsknnfqghipleIGDILSRLTVFNIsmnaldgsipssfgnmnflqfldlsnnqltgeipehLAMGCVSLRSLALsnnnleghmfsrnfnLTNLIWLQLEgnhfvgeipqslskcsslqglflsnnslsgkiprwlgNLTVLRHIimpknhiegpiplefCQLRILQIldisdnnisgslpscydfvciEQVHLSKnmlhgqlkegtffnCLTLMILDLSynhlngnipdrvdgLSQLSYLILAHNnlegevpiQLCRLNQLQLldlsnnnlhghipscfdnttlherynngsslqpfetSFVImggmdvdpkkqiLESFDFTTKSItytyqgrvpsllsgldlscnrlighippqignltkIQTLnlshnnlagpipstfsnlrniesldlsynklswkipyqlVELNTLAVFSVAYNnlsgkipeRAAQFAtfnessyegnpflcgpplpicispttmpeaspsnegdnnlidmdIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEMWTTSCYYFVidnliptrfch
Flexible Loop (DISEMBL)
MGGSKSKMVVMFVLLLIIFEGGWSEGCLNHERFALLQLKLFFIDPYNYLLDWVDDEGATDCCQWErvscnntmgRVVVLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLdlsanrlkgsidikeldslrdleklnigrnmidkfvvskgpkrlsrLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRlegsidvkefdslSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTtttqgfphFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSnnslsgkipRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICISPTTMPEASPSNEGDNNLIDMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEMWTTSCYYFVIDNLIPTRFCH
Low Complexity Region (SEG)
MGGSKSKMVVMFVLLLIIFEGGWSEGCLNHERFALLQLKLFFIDPYNYLLDWVDDEGATDCCQWERVSCNNTMGRVVVLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNsilsslarlssltsldlsANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNsilsslarlsslrslllYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFtetvttttQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYlslsnssvsnnsRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVssnqligsisssPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDaenneinaeiieSHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVslrslalsnnnlEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIqlcrlnqlqlldlsnnnlHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICISPTTMPEASPSNEGDNNLIDMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEMWTTSCYYFVIDNLIPTRFCH
Disordered region (IsUnstruct)
*******MVVMFVLLLIIFEGGWSEGCLNHERFALLQLKLFFIDPYNYLLDWVDDEGATDCCQWERVSCNNTMGRVVVLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSL**********TLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICIS***************NLIDMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEMWTTSCYYFVIDNLIPTRFC*
Disordered Region (DISOPRED)
****KSK*VVMFVLLLIIFEGGWSEGCLNHERFALLQLKLFFIDPYNYLLDWVDDEGATDCCQWERVSCNNTMGRVVVLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHER********PFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCG****************************DIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEMWTTSCYYFVIDNLIPTRFCH
Disordered Region (DISEMBL)
MGGSKSKMVVMFVLLLIIFEGGWSEGCLNHERFALLQLKLFFIDPYNYLLDWVDDEGATDCCQWERVSCNNTMGRVVVLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICISPTTMPEASPSNEGDNNLIDMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEMWTTSCYYFVIDNLIPTRFCH
Disordered Region (DISPRO)
**GSKSKMVVMFVLLLIIFEGGWSEGCLNHERFALLQLKLFFIDPYNYLLDWVDDEGATDCCQWERVSCNNTMGRVVVLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICIS***************NLIDMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEMWTTSCYYFVIDNLIPTRFC*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGGSKSKMVVMFVLLLIIFEGGWSEGCLNHERFALLQLKLFFIDPYNYLLDWVDDEGATDCCQWERVSCNNTMGRVVVLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICISPTTMPEASPSNEGDNNLIDMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEMWTTSCYYFVIDNLIPTRFCH
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1102	2.2.26 [Sep-21-2011]
Q9FL28	1173	LRR receptor-like serine/	no	no	0.629	0.591	0.297	7e-68
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.731	0.645	0.277	6e-66
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.640	0.563	0.291	4e-63
Q9ZWC8	1166	Serine/threonine-protein	no	no	0.600	0.567	0.293	6e-59
Q9LJF3	1164	Receptor-like protein kin	no	no	0.591	0.560	0.310	2e-58
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.653	0.604	0.301	7e-58
Q8GUQ5	1207	Brassinosteroid LRR recep	N/A	no	0.568	0.519	0.296	1e-55
Q8L899	1207	Systemin receptor SR160 O	N/A	no	0.568	0.519	0.295	3e-55
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.576	0.558	0.283	7e-55
Q9ZPS9	1143	Serine/threonine-protein	no	no	0.516	0.497	0.303	7e-55

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  259 bits (663), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 229/769 (29%), Positives = 357/769 (46%), Gaps = 75/769 (9%)

Query: 278  GLRKLSYLHLLRVGIRD-GSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLK 336
             +  L+YL +L +       K+   +G    LN L L  N F+ ++ +          LK
Sbjct: 91   AIANLTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSIPS------GIWELK 144

Query: 337  ELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMAD 396
             ++  D R   N      + E +     L L     +N +  + + L  LVHLQ    A 
Sbjct: 145  NIFYLDLR---NNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQMFVAAG 201

Query: 397  NDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEP 456
            N L GS+P  +  + +L  LD+S NQL G I      +L +++ L+L++N  +  I  E 
Sbjct: 202  NHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRD-FGNLLNLQSLVLTENLLEGDIPAE- 259

Query: 457  LFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLE 516
            + N S L   +  +N++  +I                            P  L N   L+
Sbjct: 260  IGNCSSLVQLELYDNQLTGKI----------------------------PAELGNLVQLQ 291

Query: 517  YVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQG 576
             +R+   K+    P+ L    T+L  L L  + LVGP    I   + L +L +  NNF G
Sbjct: 292  ALRIYKNKLTSSIPSSLFRL-TQLTHLGLSENHLVGPISEEIGFLESLEVLTLHSNNFTG 350

Query: 577  HIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCV 636
              P  I + L  LTV  +  N + G +P+  G +  L+ L   +N LTG IP  ++  C 
Sbjct: 351  EFPQSITN-LRNLTVLTVGFNNISGELPADLGLLTNLRNLSAHDNLLTGPIPSSIS-NCT 408

Query: 637  SLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSL 696
             L+ L LS+N + G +  R F   NL ++ +  NHF GEIP  +  CS+L+ L +++N+L
Sbjct: 409  GLKLLDLSHNQMTGEI-PRGFGRMNLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNL 467

Query: 697  SGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLP-SCYDFV 755
            +G +   +G L  LR + +  N + GPIP E   L+ L IL +  N  +G +P    +  
Sbjct: 468  TGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLT 527

Query: 756  CIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNN 815
             ++ + +  N L G + E   F+   L +LDLS N  +G IP     L  L+YL L  N 
Sbjct: 528  LLQGLRMYSNDLEGPIPE-EMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNK 586

Query: 816  LEGEVPIQLCRLNQLQLLDLSNNNLHGHIP----SCFDNTTLHERYNNGSSLQPFETSFV 871
              G +P  L  L+ L   D+S+N L G IP    +   N  L+  ++N           +
Sbjct: 587  FNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLYLNFSNN----------L 636

Query: 872  IMGGMDVDPKK-QILESFDFTTKSITYTYQGRVPSLLSG------LDLSCNRLIGHIPPQ 924
            + G +  +  K ++++  D +       + G +P  L        LD S N L GHIP +
Sbjct: 637  LTGTIPKELGKLEMVQEIDLSNN----LFSGSIPRSLQACKNVFTLDFSQNNLSGHIPDE 692

Query: 925  I-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFS 983
            +   +  I +LNLS N+ +G IP +F N+ ++ SLDLS N L+ +IP  L  L+TL    
Sbjct: 693  VFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLK 752

Query: 984  VAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICISPTTMPEAS 1032
            +A NNL G +PE    F   N S   GN  LCG   P  + P T+ + S
Sbjct: 753  LASNNLKGHVPESGV-FKNINASDLMGNTDLCGSKKP--LKPCTIKQKS 798

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  253 bits (646), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 289/1043 (27%), Positives = 436/1043 (41%), Gaps = 237/1043 (22%)

Query: 19   FEGGWSEGCLNHERFALLQLKLFFI------DPYNYLLDWVDDEGATDCCQWERVSCNNT 72
            F G    G +N++   LL++K   +      DP   L  W  D    + C W  V+C+NT
Sbjct: 14   FSGLGQPGIINNDLQTLLEVKKSLVTNPQEDDP---LRQWNSDN--INYCSWTGVTCDNT 68

Query: 73   -MGRVVVLDLSQ---THRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRL 128
             + RV+ L+L+    T     W      F  F  L  LDL  N++ G             
Sbjct: 69   GLFRVIALNLTGLGLTGSISPW------FGRFDNLIHLDLSSNNLVG------------- 109

Query: 129  SNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRN 188
                            I ++L+ L+SL SL L +N+L G I   +L SL ++  L IG  
Sbjct: 110  ---------------PIPTALSNLTSLESLFLFSNQLTGEIP-SQLGSLVNIRSLRIG-- 151

Query: 189  MIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDV 248
              D  +V   P+ L  L NL++  L+       I S L RL  ++SL+L DN LEG I  
Sbjct: 152  --DNELVGDIPETLGNLVNLQMLALASCRLTGPIPSQLGRLVRVQSLILQDNYLEGPIPA 209

Query: 249  KEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSL 308
             E  + S+L     + N + N  +P                            +G   +L
Sbjct: 210  -ELGNCSDLTVFTAAENML-NGTIPA--------------------------ELGRLENL 241

Query: 309  NTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLS 368
              L+L+ N+ T  + +                              +GE M  +QYLSL 
Sbjct: 242  EILNLANNSLTGEIPSQ-----------------------------LGE-MSQLQYLSLM 271

Query: 369  NSSVSNNSRTLDQGLCP-----LVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQL 423
             + +        QGL P     L +LQ L ++ N+L G +P    NM+ L  L +++N L
Sbjct: 272  ANQL--------QGLIPKSLADLGNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLANNHL 323

Query: 424  IGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSL 483
             GS+  S   + T++E L+LS       I +E L     LK  D  NN +   I E+   
Sbjct: 324  SGSLPKSICSNNTNLEQLVLSGTQLSGEIPVE-LSKCQSLKQLDLSNNSLAGSIPEA--- 379

Query: 484  TTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQL 543
                 +L  L L +   +G   P  + N  +L+++ L H  +  + P  +     KL  L
Sbjct: 380  LFELVELTDLYLHNNTLEGTLSPS-ISNLTNLQWLVLYHNNLEGKLPKEI-SALRKLEVL 437

Query: 544  SLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSI 603
             L  +   G     I +   L+++D+  N+F+G IP  IG  L  L + ++  N L G +
Sbjct: 438  FLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGR-LKELNLLHLRQNELVGGL 496

Query: 604  PSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLI 663
            P+S GN + L  LDL++NQL+G IP         L  L L NN+L+G++     +L NL 
Sbjct: 497  PASLGNCHQLNILDLADNQLSGSIPSSFGF-LKGLEQLMLYNNSLQGNLPDSLISLRNLT 555

Query: 664  WLQLEGNHFVG-----------------------EIPQSLSKCSSLQGLFLSNNSLSGKI 700
             + L  N   G                       EIP  L    +L  L L  N L+GKI
Sbjct: 556  RINLSHNRLNGTIHPLCGSSSYLSFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKI 615

Query: 701  PRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVC-IEQ 759
            P  LG +  L  + M  N + G IPL+    + L  +D+++N +SG +P     +  + +
Sbjct: 616  PWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGE 675

Query: 760  VHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGE 819
            + LS N     L     FNC  L++L L  N LNG+IP  +  L  L+ L L  N   G 
Sbjct: 676  LKLSSNQFVESLPT-ELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLNLDKNQFSGS 734

Query: 820  VPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVD 879
            +P  + +L++L  L LS N+L G I                    P E            
Sbjct: 735  LPQAMGKLSKLYELRLSRNSLTGEI--------------------PVEI----------- 763

Query: 880  PKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHN 939
                                 G++  L S LDLS N   G IP  IG L+K++TL+LSHN
Sbjct: 764  ---------------------GQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHN 802

Query: 940  NLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQ 999
             L G +P +  +++                        +L   +V++NNL GK+ +   Q
Sbjct: 803  QLTGEVPGSVGDMK------------------------SLGYLNVSFNNLGGKLKK---Q 835

Query: 1000 FATFNESSYEGNPFLCGPPLPIC 1022
            F+ +   S+ GN  LCG PL  C
Sbjct: 836  FSRWPADSFLGNTGLCGSPLSRC 858

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  244 bits (622), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 243/835 (29%), Positives = 390/835 (46%), Gaps = 129/835 (15%)

Query: 275  ACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTT-------- 326
             C G R++  L+L  +G+     +  S+G F +L  +DLS N     + TT         
Sbjct: 67   TCGG-REIIGLNLSGLGLT--GSISPSIGRFNNLIHIDLSSNRLVGPIPTTLSNLSSSLE 123

Query: 327  --------------QGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSV 372
                                 +LK L + D    LN +  +  G ++ ++Q L+L++  +
Sbjct: 124  SLHLFSNLLSGDIPSQLGSLVNLKSLKLGDNE--LNGTIPETFG-NLVNLQMLALASCRL 180

Query: 373  SNNSRTLDQGLCP-----LVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSI 427
            +        GL P     LV LQ L + DN+L G +P  + N TSL +   + N+L GS+
Sbjct: 181  T--------GLIPSRFGRLVQLQTLILQDNELEGPIPAEIGNCTSLALFAAAFNRLNGSL 232

Query: 428  SSSPLIHLTSIEDLILSDNHF--QIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTT 485
             +  L  L +++ L L DN F  +IP  L  L +   L +     N++   I +     T
Sbjct: 233  PAE-LNRLKNLQTLNLGDNSFSGEIPSQLGDLVSIQYLNLI---GNQLQGLIPKR---LT 285

Query: 486  PNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSL 545
                LQ+L LSS    G+   +F +  + LE++ L+  +++   P  +  NNT L+QL L
Sbjct: 286  ELANLQTLDLSSNNLTGVIHEEF-WRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFL 344

Query: 546  VNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIP------LEIGDI-------------- 585
                L G     I + + L+LLD+S N   G IP      +E+ ++              
Sbjct: 345  SETQLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSSS 404

Query: 586  ---LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLA 642
               L+ L  F +  N L+G +P   G +  L+ + L  N+ +GE+P  +   C  L+ + 
Sbjct: 405  ISNLTNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENRFSGEMPVEIG-NCTRLQEID 463

Query: 643  LSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPR 702
               N L G + S    L +L  L L  N  VG IP SL  C  +  + L++N LSG IP 
Sbjct: 464  WYGNRLSGEIPSSIGRLKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPS 523

Query: 703  WLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSL-PSC-------YDF 754
              G LT L   ++  N ++G +P     L+ L  ++ S N  +GS+ P C       +D 
Sbjct: 524  SFGFLTALELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSISPLCGSSSYLSFDV 583

Query: 755  V----------------CIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPD 798
                              ++++ L KN   G++   TF     L +LD+S N L+G IP 
Sbjct: 584  TENGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPR-TFGKISELSLLDISRNSLSGIIPV 642

Query: 799  RVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPS-CFDNTTLHERY 857
             +    +L+++ L +N L G +P  L +L  L  L LS+N   G +P+  F  T +   +
Sbjct: 643  ELGLCKKLTHIDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLF 702

Query: 858  NNGSSLQ---PFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLD--- 911
             +G+SL    P E     +G +      Q L + +     ++    G +PS +  L    
Sbjct: 703  LDGNSLNGSIPQE-----IGNL------QALNALNLEENQLS----GPLPSTIGKLSKLF 747

Query: 912  ---LSCNRLIGHIPPQIGNLTKIQT-LNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSW 967
               LS N L G IP +IG L  +Q+ L+LS+NN  G IPST S L  +ESLDLS+N+L  
Sbjct: 748  ELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVG 807

Query: 968  KIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPIC 1022
            ++P Q+ ++ +L   +++YNNL GK+ +   QF+ +   ++ GN  LCG PL  C
Sbjct: 808  EVPGQIGDMKSLGYLNLSYNNLEGKLKK---QFSRWQADAFVGNAGLCGSPLSHC 859

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZWC8|BRL1_ARATH Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1

 Score =  229 bits (585), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 217/739 (29%), Positives = 334/739 (45%), Gaps = 77/739 (10%)

Query: 388  HLQELHMADNDLR--GSLPWCLANMTSLRILDVSSNQLIGSISSSP--LIHLTSIEDL-- 441
            +LQ L ++ N +     + +  +  ++L  +++S+N+L+G +  +P  L  LT++ DL  
Sbjct: 126  YLQVLDLSSNSISDYSMVDYVFSKCSNLVSVNISNNKLVGKLGFAPSSLQSLTTV-DLSY 184

Query: 442  -ILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYR 500
             ILSD   +IP S    F  S LK  D  +N ++ +  +       N    SL  S    
Sbjct: 185  NILSD---KIPESFISDFPAS-LKYLDLTHNNLSGDFSDLSFGICGNLTFFSL--SQNNL 238

Query: 501  DGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHS 560
             G  FP  L N   LE + +S   +  + PN                    G +     S
Sbjct: 239  SGDKFPITLPNCKFLETLNISRNNLAGKIPN--------------------GEY---WGS 275

Query: 561  HKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSN 620
             + L+ L ++ N   G IP E+  +   L + ++S N   G +PS F    +LQ L+L N
Sbjct: 276  FQNLKQLSLAHNRLSGEIPPELSLLCKTLVILDLSGNTFSGELPSQFTACVWLQNLNLGN 335

Query: 621  NQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQ-- 678
            N L+G+    +      +  L ++ NN+ G +     N +NL  L L  N F G +P   
Sbjct: 336  NYLSGDFLNTVVSKITGITYLYVAYNNISGSVPISLTNCSNLRVLDLSSNGFTGNVPSGF 395

Query: 679  -SLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQIL 737
             SL     L+ + ++NN LSG +P  LG    L+ I +  N + GPIP E   L  L  L
Sbjct: 396  CSLQSSPVLEKILIANNYLSGTVPMELGKCKSLKTIDLSFNELTGPIPKEIWMLPNLSDL 455

Query: 738  DISDNNISGSLPS--CYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGN 795
             +  NN++G++P   C     +E + L+ N+L G + E +   C  ++ + LS N L G 
Sbjct: 456  VMWANNLTGTIPEGVCVKGGNLETLILNNNLLTGSIPE-SISRCTNMIWISLSSNRLTGK 514

Query: 796  IPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE 855
            IP  +  LS+L+ L L +N+L G VP QL     L  LDL++NNL G +P         E
Sbjct: 515  IPSGIGNLSKLAILQLGNNSLSGNVPRQLGNCKSLIWLDLNSNNLTGDLPG--------E 566

Query: 856  RYNNGSSLQPFETS---FVIM---GGMDVDPKKQILESFDFTTKSI-----------TYT 898
              +    + P   S   F  +   GG D      ++E      + +           T  
Sbjct: 567  LASQAGLVMPGSVSGKQFAFVRNEGGTDCRGAGGLVEFEGIRAERLERLPMVHSCPATRI 626

Query: 899  YQGRVPSLLSG------LDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNL 952
            Y G      S        D+S N + G IPP  GN+  +Q LNL HN + G IP +F  L
Sbjct: 627  YSGMTMYTFSANGSMIYFDISYNAVSGFIPPGYGNMGYLQVLNLGHNRITGTIPDSFGGL 686

Query: 953  RNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNP 1012
            + I  LDLS+N L   +P  L  L+ L+   V+ NNL+G IP    Q  TF  S Y  N 
Sbjct: 687  KAIGVLDLSHNNLQGYLPGSLGSLSFLSDLDVSNNNLTGPIP-FGGQLTTFPVSRYANNS 745

Query: 1013 FLCGPPLPICISPTTMPEASPSNEGDNNLIDMDIFFITFT-TSYVIVIFGIVAVLYVNAR 1071
             LCG PL  C S    P  S  +     +    I  I F+   +V+++  +  V  V  +
Sbjct: 746  GLCGVPLRPCGSAPRRPITSRIHAKKQTVATAVIAGIAFSFMCFVMLVMALYRVRKVQKK 805

Query: 1072 WRRRWFYLVEMWTT-SCYY 1089
             ++R  Y+  + T+ SC +
Sbjct: 806  EQKREKYIESLPTSGSCSW 824

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. Binds brassinolide. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LJF3|BRL3_ARATH Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1

 Score =  228 bits (581), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 221/712 (31%), Positives = 329/712 (46%), Gaps = 60/712 (8%)

Query: 413  LRILDVSSNQLIGS----ISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDA 468
            L +LD+SSN L  S       S  ++L S+     S N     +   P  ++ R+   D 
Sbjct: 126  LEVLDLSSNSLTDSSIVDYVFSTCLNLVSVN---FSHNKLAGKLKSSPSASNKRITTVDL 182

Query: 469  ENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYN-QHDLEYVRLSHIKMN- 526
             NN  + EI E+     PN  L+ L LS     G  F +  +    +L    LS   ++ 
Sbjct: 183  SNNRFSDEIPETFIADFPN-SLKHLDLSGNNVTG-DFSRLSFGLCENLTVFSLSQNSISG 240

Query: 527  EEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSH----KQLRLLDVSKNNFQGHIPLEI 582
            + FP   L N   L  L+L  +SL+G  ++P   +    + LR L ++ N + G IP E+
Sbjct: 241  DRFP-VSLSNCKLLETLNLSRNSLIG--KIPGDDYWGNFQNLRQLSLAHNLYSGEIPPEL 297

Query: 583  GDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLA 642
              +   L V ++S N+L G +P SF +   LQ L+L NN+L+G+    +      + +L 
Sbjct: 298  SLLCRTLEVLDLSGNSLTGQLPQSFTSCGSLQSLNLGNNKLSGDFLSTVVSKLSRITNLY 357

Query: 643  LSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQ---SLSKCSSLQGLFLSNNSLSGK 699
            L  NN+ G +     N +NL  L L  N F GE+P    SL   S L+ L ++NN LSG 
Sbjct: 358  LPFNNISGSVPISLTNCSNLRVLDLSSNEFTGEVPSGFCSLQSSSVLEKLLIANNYLSGT 417

Query: 700  IPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPS--CYDFVCI 757
            +P  LG    L+ I +  N + G IP E   L  L  L +  NN++G +P   C D   +
Sbjct: 418  VPVELGKCKSLKTIDLSFNALTGLIPKEIWTLPKLSDLVMWANNLTGGIPESICVDGGNL 477

Query: 758  EQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLE 817
            E + L+ N+L G L E +   C  ++ + LS N L G IP  +  L +L+ L L +N+L 
Sbjct: 478  ETLILNNNLLTGSLPE-SISKCTNMLWISLSSNLLTGEIPVGIGKLEKLAILQLGNNSLT 536

Query: 818  GEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETS---FVIM- 873
            G +P +L     L  LDL++NNL G++P         E  +    + P   S   F  + 
Sbjct: 537  GNIPSELGNCKNLIWLDLNSNNLTGNLPG--------ELASQAGLVMPGSVSGKQFAFVR 588

Query: 874  --GGMDVDPKKQILESFDFTTKSI-----------TYTYQGRVPSLLSG------LDLSC 914
              GG D      ++E      + +           T  Y G    + S       LDLS 
Sbjct: 589  NEGGTDCRGAGGLVEFEGIRAERLEHFPMVHSCPKTRIYSGMTMYMFSSNGSMIYLDLSY 648

Query: 915  NRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLV 974
            N + G IP   G +  +Q LNL HN L G IP +F  L+ I  LDLS+N L   +P  L 
Sbjct: 649  NAVSGSIPLGYGAMGYLQVLNLGHNLLTGTIPDSFGGLKAIGVLDLSHNDLQGFLPGSLG 708

Query: 975  ELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICISPT--TMPEAS 1032
             L+ L+   V+ NNL+G IP    Q  TF  + Y  N  LCG PLP C S +  T   A 
Sbjct: 709  GLSFLSDLDVSNNNLTGPIP-FGGQLTTFPLTRYANNSGLCGVPLPPCSSGSRPTRSHAH 767

Query: 1033 PSNEGDNNLIDMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEMWT 1084
            P  +     +   I F +F    V++I  +     V  + ++R  Y+  + T
Sbjct: 768  PKKQSIATGMSAGIVF-SFMC-IVMLIMALYRARKVQKKEKQREKYIESLPT 817

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Binds brassinolide. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  226 bits (576), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 243/805 (30%), Positives = 369/805 (45%), Gaps = 85/805 (10%)

Query: 222  ILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRK 281
            I   ++ L +LR L L  N+  G I   E  +L +L+ LD+S N +    +P+  S L +
Sbjct: 81   IPKEISSLKNLRELCLAGNQFSGKIP-PEIWNLKHLQTLDLSGNSLTGL-LPRLLSELPQ 138

Query: 282  LSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMD 341
            L YL L       GS       S P+L++LD+S N+ +  +           +L  LYM 
Sbjct: 139  LLYLDLSDNHF-SGSLPPSFFISLPALSSLDVSNNSLSGEIPPEIG---KLSNLSNLYM- 193

Query: 342  DARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRG 401
                 LN+   QI  E + +I  L    +     +  L + +  L HL +L ++ N L+ 
Sbjct: 194  ----GLNSFSGQIPSE-IGNISLLKNFAAPSCFFNGPLPKEISKLKHLAKLDLSYNPLKC 248

Query: 402  SLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHS 461
            S+P     + +L IL++ S +LIG I    L +  S++ L+LS N    P+ LE   +  
Sbjct: 249  SIPKSFGELHNLSILNLVSAELIGLIPPE-LGNCKSLKSLMLSFNSLSGPLPLE--LSEI 305

Query: 462  RLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLS 521
             L  F AE N+++                             + P ++     L+ + L+
Sbjct: 306  PLLTFSAERNQLSG----------------------------SLPSWMGKWKVLDSLLLA 337

Query: 522  HIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLE 581
            + + + E P+ + E+   L+ LSL ++ L G     +     L  +D+S N   G I  E
Sbjct: 338  NNRFSGEIPHEI-EDCPMLKHLSLASNLLSGSIPRELCGSGSLEAIDLSGNLLSGTIE-E 395

Query: 582  IGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSL 641
            + D  S L    ++ N ++GSIP     +  +  LDL +N  TGEIP+ L     +L   
Sbjct: 396  VFDGCSSLGELLLTNNQINGSIPEDLWKLPLMA-LDLDSNNFTGEIPKSL-WKSTNLMEF 453

Query: 642  ALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIP 701
              S N LEG++ +   N  +L  L L  N   GEIP+ + K +SL  L L+ N   GKIP
Sbjct: 454  TASYNRLEGYLPAEIGNAASLKRLVLSDNQLTGEIPREIGKLTSLSVLNLNANMFQGKIP 513

Query: 702  RWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPS--CYDFVCIEQ 759
              LG+ T L  + +  N+++G IP +   L  LQ L +S NN+SGS+PS     F  IE 
Sbjct: 514  VELGDCTSLTTLDLGSNNLQGQIPDKITALAQLQCLVLSYNNLSGSIPSKPSAYFHQIEM 573

Query: 760  VHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGE 819
              LS    HG              I DLSYN L+G IP+ +     L  + L++N+L GE
Sbjct: 574  PDLSFLQHHG--------------IFDLSYNRLSGPIPEELGECLVLVEISLSNNHLSGE 619

Query: 820  VPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYN--NGSSLQPFETSFVIMGGMD 877
            +P  L RL  L +LDLS N L G IP    N+   +  N  N         SF ++G   
Sbjct: 620  IPASLSRLTNLTILDLSGNALTGSIPKEMGNSLKLQGLNLANNQLNGHIPESFGLLGS-- 677

Query: 878  VDPKKQILESFDFTTKSITYTYQGRVPSLLSGL------DLSCNRLIGHIPPQIGNLTKI 931
                   L   + T   +     G VP+ L  L      DLS N L G +  ++  + K+
Sbjct: 678  -------LVKLNLTKNKL----DGPVPASLGNLKELTHMDLSFNNLSGELSSELSTMEKL 726

Query: 932  QTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSG 991
              L +  N   G IPS   NL  +E LD+S N LS +IP ++  L  L   ++A NNL G
Sbjct: 727  VGLYIEQNKFTGEIPSELGNLTQLEYLDVSENLLSGEIPTKICGLPNLEFLNLAKNNLRG 786

Query: 992  KIPERAAQFATFNESSYEGNPFLCG 1016
            ++P         +++   GN  LCG
Sbjct: 787  EVPSDGV-CQDPSKALLSGNKELCG 810

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1

 Score =  219 bits (558), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 214/721 (29%), Positives = 325/721 (45%), Gaps = 94/721 (13%)

Query: 389  LQELHMADNDLRGS--LPWCLA-NMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSD 445
            LQ L ++ N++ G    PW  +     L    +  N+L GSI   P +   ++  L LS 
Sbjct: 187  LQVLDLSYNNISGFNLFPWVSSMGFVELEFFSLKGNKLAGSI---PELDFKNLSYLDLSA 243

Query: 446  NHFQIPISLEPLFNH-SRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGIT 504
            N+F    ++ P F   S L+  D  +N+   +I  S S      +L  L L++    G+ 
Sbjct: 244  NNFS---TVFPSFKDCSNLQHLDLSSNKFYGDIGSSLSSCG---KLSFLNLTNNQFVGLV 297

Query: 505  FPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQL 564
             PK       L+Y+ L        +PN L +    + +L L  ++  G     +     L
Sbjct: 298  -PKL--PSESLQYLYLRGNDFQGVYPNQLADLCKTVVELDLSYNNFSGMVPESLGECSSL 354

Query: 565  RLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLT 624
             L+D+S NNF G +P++    LS +    +S N   G +P SF N+  L+ LD+S+N LT
Sbjct: 355  ELVDISYNNFSGKLPVDTLSKLSNIKTMVLSFNKFVGGLPDSFSNLLKLETLDMSSNNLT 414

Query: 625  GEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCS 684
            G IP  +                           + NL  L L+ N F G IP SLS CS
Sbjct: 415  GVIPSGICKD-----------------------PMNNLKVLYLQNNLFKGPIPDSLSNCS 451

Query: 685  SLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNI 744
             L  L LS N L+G IP  LG+L+ L+ +I+  N + G IP E   L+ L+ L +  N++
Sbjct: 452  QLVSLDLSFNYLTGSIPSSLGSLSKLKDLILWLNQLSGEIPQELMYLQALENLILDFNDL 511

Query: 745  SGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLS 804
            +G +P+                        +  NC  L  + LS N L+G IP  +  LS
Sbjct: 512  TGPIPA------------------------SLSNCTKLNWISLSNNQLSGEIPASLGRLS 547

Query: 805  QLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTT--------LHER 856
             L+ L L +N++ G +P +L     L  LDL+ N L+G IP      +          +R
Sbjct: 548  NLAILKLGNNSISGNIPAELGNCQSLIWLDLNTNFLNGSIPPPLFKQSGNIAVALLTGKR 607

Query: 857  Y----NNGSSLQPFETSFVIMGGMDVDPKKQILE----SFDFTTKSITYTYQGRVPSLLS 908
            Y    N+GS       + +  GG+  +   +I      +F    + IT        S++ 
Sbjct: 608  YVYIKNDGSKECHGAGNLLEFGGIRQEQLDRISTRHPCNFTRVYRGITQPTFNHNGSMIF 667

Query: 909  GLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWK 968
             LDLS N+L G IP ++G +  +  LNL HN+L+G IP     L+N+  LDLSYN+ +  
Sbjct: 668  -LDLSYNKLEGSIPKELGAMYYLSILNLGHNDLSGMIPQQLGGLKNVAILDLSYNRFNGT 726

Query: 969  IPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICISPTTM 1028
            IP  L  L  L    ++ NNLSG IPE +A F TF +  +  N  LCG PLPI  S    
Sbjct: 727  IPNSLTSLTLLGEIDLSNNNLSGMIPE-SAPFDTFPDYRFANNS-LCGYPLPIPCSSGPK 784

Query: 1029 PEASPSNEGDNNL------IDMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEM 1082
             +A+   +           + M + F  F       IFG++ V     + RR+    +E 
Sbjct: 785  SDANQHQKSHRRQASLAGSVAMGLLFSLF------CIFGLIIVAIETKKRRRKKEAALEA 838

Query: 1083 W 1083
            +
Sbjct: 839  Y 839

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. May be involved in a feedback regulation of brassinosteroid biosynthesis. May be also involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8L899|BRI1_SOLPE Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1

 Score =  218 bits (554), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 213/721 (29%), Positives = 325/721 (45%), Gaps = 94/721 (13%)

Query: 389  LQELHMADNDLRGS--LPWCLA-NMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSD 445
            LQ L ++ N++ G    PW  +     L    +  N+L GSI   P +   ++  L LS 
Sbjct: 187  LQVLDLSYNNISGFNLFPWVSSMGFVELEFFSIKGNKLAGSI---PELDFKNLSYLDLSA 243

Query: 446  NHFQIPISLEPLFNH-SRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGIT 504
            N+F    ++ P F   S L+  D  +N+   +I  S S      +L  L L++    G+ 
Sbjct: 244  NNFS---TVFPSFKDCSNLQHLDLSSNKFYGDIGSSLSSCG---KLSFLNLTNNQFVGLV 297

Query: 505  FPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQL 564
             PK       L+Y+ L        +PN L +    + +L L  ++  G     +     L
Sbjct: 298  -PKL--PSESLQYLYLRGNDFQGVYPNQLADLCKTVVELDLSYNNFSGMVPESLGECSSL 354

Query: 565  RLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLT 624
             L+D+S NNF G +P++    LS +    +S N   G +P SF N+  L+ LD+S+N LT
Sbjct: 355  ELVDISNNNFSGKLPVDTLLKLSNIKTMVLSFNKFVGGLPDSFSNLPKLETLDMSSNNLT 414

Query: 625  GEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCS 684
            G IP  +                           + NL  L L+ N F G IP SLS CS
Sbjct: 415  GIIPSGICKD-----------------------PMNNLKVLYLQNNLFKGPIPDSLSNCS 451

Query: 685  SLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNI 744
             L  L LS N L+G IP  LG+L+ L+ +I+  N + G IP E   L+ L+ L +  N++
Sbjct: 452  QLVSLDLSFNYLTGSIPSSLGSLSKLKDLILWLNQLSGEIPQELMYLQALENLILDFNDL 511

Query: 745  SGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLS 804
            +G +P+                        +  NC  L  + LS N L+G IP  +  LS
Sbjct: 512  TGPIPA------------------------SLSNCTKLNWISLSNNQLSGEIPASLGRLS 547

Query: 805  QLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTT--------LHER 856
             L+ L L +N++ G +P +L     L  LDL+ N L+G IP      +          +R
Sbjct: 548  NLAILKLGNNSISGNIPAELGNCQSLIWLDLNTNFLNGSIPPPLFKQSGNIAVALLTGKR 607

Query: 857  Y----NNGSSLQPFETSFVIMGGMDVDPKKQILE----SFDFTTKSITYTYQGRVPSLLS 908
            Y    N+GS       + +  GG+  +   +I      +F    + IT        S++ 
Sbjct: 608  YVYIKNDGSKECHGAGNLLEFGGIRQEQLDRISTRHPCNFTRVYRGITQPTFNHNGSMIF 667

Query: 909  GLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWK 968
             LDLS N+L G IP ++G +  +  LNL HN+L+G IP     L+N+  LDLSYN+ +  
Sbjct: 668  -LDLSYNKLEGSIPKELGAMYYLSILNLGHNDLSGMIPQQLGGLKNVAILDLSYNRFNGT 726

Query: 969  IPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICISPTTM 1028
            IP  L  L  L    ++ NNLSG IPE +A F TF +  +  N  LCG PLP+  S    
Sbjct: 727  IPNSLTSLTLLGEIDLSNNNLSGMIPE-SAPFDTFPDYRFANNS-LCGYPLPLPCSSGPK 784

Query: 1029 PEASPSNEGDNNL------IDMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEM 1082
             +A+   +           + M + F  F       IFG++ V     + RR+    +E 
Sbjct: 785  SDANQHQKSHRRQASLAGSVAMGLLFSLF------CIFGLIIVAIETKKRRRKKEAALEA 838

Query: 1083 W 1083
            +
Sbjct: 839  Y 839

Receptor with a serine/threonine-protein kinase activity. Involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. May also regulate, in response to brassinosteroid binding, a signaling cascade involved in plant development.

Solanum peruvianum (taxid: 4082)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  216 bits (551), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 210/740 (28%), Positives = 332/740 (44%), Gaps = 105/740 (14%)

Query: 378  TLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTS 437
            T+   L     L  + +  N L G LP  + N+TSL + +V+ N+L G I   P+   +S
Sbjct: 107  TIPTSLAYCTRLLSVFLQYNSLSGKLPPAMRNLTSLEVFNVAGNRLSGEI---PVGLPSS 163

Query: 438  IEDLILSDNHF--QIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLL 495
            ++ L +S N F  QIP  L    N ++L++ +   N++  EI                  
Sbjct: 164  LQFLDISSNTFSGQIPSGLA---NLTQLQLLNLSYNQLTGEI------------------ 202

Query: 496  SSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFR 555
                      P  L N   L+Y+ L    +    P+  + N + L  LS   + + G   
Sbjct: 203  ----------PASLGNLQSLQYLWLDFNLLQGTLPS-AISNCSSLVHLSASENEIGGVIP 251

Query: 556  LPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSI-PSSFGNMNF-L 613
                +  +L +L +S NNF G +P  +    + LT+  +  NA    + P +  N    L
Sbjct: 252  AAYGALPKLEVLSLSNNNFSGTVPFSL-FCNTSLTIVQLGFNAFSDIVRPETTANCRTGL 310

Query: 614  QFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFV 673
            Q LDL  N+++G  P  L    +SL++L +S N   G +     NL  L  L+L  N   
Sbjct: 311  QVLDLQENRISGRFPLWLT-NILSLKNLDVSGNLFSGEIPPDIGNLKRLEELKLANNSLT 369

Query: 674  GEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRI 733
            GEIP  + +C SL  L    NSL G+IP +LG +  L+ + + +N   G +P     L+ 
Sbjct: 370  GEIPVEIKQCGSLDVLDFEGNSLKGQIPEFLGYMKALKVLSLGRNSFSGYVPSSMVNLQQ 429

Query: 734  LQILDISDNNISGSLP-SCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHL 792
            L+ L++ +NN++GS P        + ++ LS N   G +   +  N   L  L+LS N  
Sbjct: 430  LERLNLGENNLNGSFPVELMALTSLSELDLSGNRFSGAVPV-SISNLSNLSFLNLSGNGF 488

Query: 793  NGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTT 852
            +G IP  V  L +L+ L L+  N+ GEVP++L  L  +Q++ L  NN  G +P  F ++ 
Sbjct: 489  SGEIPASVGNLFKLTALDLSKQNMSGEVPVELSGLPNVQVIALQGNNFSGVVPEGF-SSL 547

Query: 853  LHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTY-----QGRVP--- 904
            +  RY N SS      SF            +I ++F F    ++ +       G +P   
Sbjct: 548  VSLRYVNLSS-----NSF----------SGEIPQTFGFLRLLVSLSLSDNHISGSIPPEI 592

Query: 905  ---SLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLS------------------------ 937
               S L  L+L  NRL+GHIP  +  L +++ L+L                         
Sbjct: 593  GNCSALEVLELRSNRLMGHIPADLSRLPRLKVLDLGQNNLSGEIPPEISQSSSLNSLSLD 652

Query: 938  HNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNT-LAVFSVAYNNLSGKIPER 996
            HN+L+G IP +FS L N+  +DLS N L+ +IP  L  +++ L  F+V+ NNL G+IP  
Sbjct: 653  HNHLSGVIPGSFSGLSNLTKMDLSVNNLTGEIPASLALISSNLVYFNVSSNNLKGEIPAS 712

Query: 997  AAQFATFNESSYEGNPFLCGPPL-PICISPTTMPEASPSNEGDNNLIDMDIFFITFTTSY 1055
                   N S + GN  LCG PL   C S T         EG      M +  +      
Sbjct: 713  LGSRIN-NTSEFSGNTELCGKPLNRRCESSTA--------EGKKKKRKMILMIVMAAIGA 763

Query: 1056 VIVIFGIVAVLYVNARWRRR 1075
             ++       +Y   +WR++
Sbjct: 764  FLLSLFCCFYVYTLLKWRKK 783

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score =  216 bits (551), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 198/652 (30%), Positives = 291/652 (44%), Gaps = 83/652 (12%)

Query: 395  ADNDLRGSLPW-CLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPIS 453
            + + L G+LP    +  ++L  + +S N   G + +   +    ++ L LS N+   PIS
Sbjct: 135  SSSGLIGTLPENFFSKYSNLISITLSYNNFTGKLPNDLFLSSKKLQTLDLSYNNITGPIS 194

Query: 454  --LEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYN 511
                PL +   +   D   N I+  I +S    T    L+SL LS    DG   PK    
Sbjct: 195  GLTIPLSSCVSMTYLDFSGNSISGYISDSLINCT---NLKSLNLSYNNFDG-QIPKSFGE 250

Query: 512  QHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSK 571
               L+ + LSH ++    P  + +    L+ L L  ++  G     + S   L+ LD+S 
Sbjct: 251  LKLLQSLDLSHNRLTGWIPPEIGDTCRSLQNLRLSYNNFTGVIPESLSSCSWLQSLDLSN 310

Query: 572  NNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHL 631
            NN  G  P  I      L +  +S N + G  P+S      L+  D S+N+ +G IP  L
Sbjct: 311  NNISGPFPNTILRSFGSLQILLLSNNLISGDFPTSISACKSLRIADFSSNRFSGVIPPDL 370

Query: 632  AMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFL 691
              G  SL  L L +                        N   GEIP ++S+CS L+ + L
Sbjct: 371  CPGAASLEELRLPD------------------------NLVTGEIPPAISQCSELRTIDL 406

Query: 692  SNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSC 751
            S N L+G IP  +GNL  L   I   N+I G IP E  +L+ L+ L +++N ++G +P  
Sbjct: 407  SLNYLNGTIPPEIGNLQKLEQFIAWYNNIAGEIPPEIGKLQNLKDLILNNNQLTGEIPP- 465

Query: 752  YDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLIL 811
                                    FFNC  +  +  + N L G +P     LS+L+ L L
Sbjct: 466  -----------------------EFFNCSNIEWVSFTSNRLTGEVPKDFGILSRLAVLQL 502

Query: 812  AHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIP-------------SCFDNTTLHERYN 858
             +NN  GE+P +L +   L  LDL+ N+L G IP                   T+    N
Sbjct: 503  GNNNFTGEIPPELGKCTTLVWLDLNTNHLTGEIPPRLGRQPGSKALSGLLSGNTMAFVRN 562

Query: 859  NGSSLQPFETSFVIMGGMDVDPKKQI--LESFDFTTKSITYTYQGRVPSLLSG------L 910
             G+S +      V   G+  +   QI  L+S DF     T  Y G + SL +       L
Sbjct: 563  VGNSCKGV-GGLVEFSGIRPERLLQIPSLKSCDF-----TRMYSGPILSLFTRYQTIEYL 616

Query: 911  DLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIP 970
            DLS N+L G IP +IG +  +Q L LSHN L+G IP T   L+N+   D S N+L  +IP
Sbjct: 617  DLSYNQLRGKIPDEIGEMIALQVLELSHNQLSGEIPFTIGQLKNLGVFDASDNRLQGQIP 676

Query: 971  YQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPIC 1022
                 L+ L    ++ N L+G IP+R  Q +T   + Y  NP LCG PLP C
Sbjct: 677  ESFSNLSFLVQIDLSNNELTGPIPQR-GQLSTLPATQYANNPGLCGVPLPEC 727

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1102
255581263	912	serine-threonine protein kinase, plant-t	0.687	0.831	0.495	0.0
224098008	1097	predicted protein [Populus trichocarpa]	0.933	0.938	0.411	0.0
224073436	1014	predicted protein [Populus trichocarpa]	0.870	0.945	0.400	0.0
359476165	1464	PREDICTED: LRR receptor-like serine/thre	0.808	0.608	0.441	1e-180
224142481	781	predicted protein [Populus trichocarpa]	0.673	0.950	0.471	1e-178
224073422	969	predicted protein [Populus trichocarpa]	0.822	0.934	0.399	1e-174
224124658	1228	predicted protein [Populus trichocarpa]	0.885	0.794	0.414	1e-174
359482735	1097	PREDICTED: receptor-like protein 12-like	0.938	0.942	0.375	1e-174
359482725	1144	PREDICTED: leucine-rich repeat receptor	0.979	0.943	0.380	1e-173
224124490	981	predicted protein [Populus trichocarpa]	0.800	0.899	0.404	1e-171

>gi|255581263|ref|XP_002531443.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223528936|gb|EEF30930.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  712 bits (1839), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/805 (49%), Positives = 527/805 (65%), Gaps = 47/805 (5%)

Query: 307  SLNTLDLSYNNFTET----------------------VTTTTQGFPHFKSLKELYMDDAR 344
            SL  LDLSYN+F E+                      V    Q  P+F++L+ELY+D  +
Sbjct: 129  SLEVLDLSYNSFNESILSSLSEFSSLKSLNLGFNPFEVPIQAQDLPNFENLEELYLD--K 186

Query: 345  IALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLP 404
            I L  SFLQ +G  M S++ LSLS   ++     + QGLC L+HL+ L ++ N+  G LP
Sbjct: 187  IELENSFLQTVG-VMTSLKVLSLSGCGLTGALPNV-QGLCELIHLRVLDVSSNEFHGILP 244

Query: 405  WCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLK 464
            WCL+N+TSL++LD+SSNQ +G IS+SPL  L S+ DL +S+NHFQ+P SL P FNHS LK
Sbjct: 245  WCLSNLTSLQLLDLSSNQFVGDISNSPLKILKSLVDLDVSNNHFQVPFSLGPFFNHSNLK 304

Query: 465  IFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIK 524
                +NN I  E  E HS   P FQL S++ S GY    TFP FLY+Q++L++V LSH+ 
Sbjct: 305  HIRGQNNAIYLEA-ELHS--APRFQLISIIFS-GYGICGTFPNFLYHQNNLQFVDLSHLS 360

Query: 525  MNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGD 584
            +  EFPNWLL NNT+L  L LVN+SL G  +LP+H H  L  LD+S N+   HIPLEIG 
Sbjct: 361  LKGEFPNWLLTNNTRLEILDLVNNSLSGHLQLPLHPHVNLLALDISNNHVHDHIPLEIGT 420

Query: 585  ILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALS 644
             L +L + N+S N  DGSIPSSFGNMN L+ LDLSNNQL+G IPEHLA GC SL +L LS
Sbjct: 421  FLPKLELLNMSSNGFDGSIPSSFGNMNSLRILDLSNNQLSGSIPEHLATGCFSLNTLILS 480

Query: 645  NNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWL 704
            NN+L+G MFS+ FNLTNL WL+L+ NHF G IP+SLSK S+L  + LS+N LSG IP W+
Sbjct: 481  NNSLQGQMFSKQFNLTNLWWLELDKNHFSGRIPKSLSK-SALSIMDLSDNHLSGMIPGWI 539

Query: 705  GNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSK 764
            GNL+ L+++I+  N ++GPIP+EFCQL  L++LD+++N++SG LPSC     I  VHLS+
Sbjct: 540  GNLSYLQNLILSNNRLKGPIPVEFCQLHYLEVLDLANNSVSGILPSCLSPSSIIHVHLSQ 599

Query: 765  NMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQL 824
            NM+ G      F     L+ LDLS N + G IP  + G++ L  L L  N  +GE+P Q+
Sbjct: 600  NMIEGPWTNA-FSGSHFLVTLDLSSNRITGRIPTLIGGINALRILNLKSNRFDGEIPAQI 658

Query: 825  CRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQI 884
            C L QL L+ L++NNL G IPSC        + +   SL P              P + +
Sbjct: 659  CGLYQLSLIVLADNNLSGSIPSCL-------QLDQSDSLAPDVPPVPNPLNPYYLPVRPM 711

Query: 885  LESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGP 944
                 FTTK  +Y+YQG++ S +SG+D SCN+L G IPP++GN + I +LNLS+N   GP
Sbjct: 712  Y----FTTKRRSYSYQGKILSYISGIDFSCNKLTGEIPPEMGNHSAIYSLNLSYNRFTGP 767

Query: 945  IPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFN 1004
            IPSTFSNL+ IESLDLSYN L+  IP QL+EL  L+ FSVA+NNL GK P+R  QFATF 
Sbjct: 768  IPSTFSNLKQIESLDLSYNNLNGDIPSQLLELKFLSYFSVAHNNLFGKTPKRTGQFATFE 827

Query: 1005 ESSYEGNPFLCGPPLPICIS---PTTMPEASPSNEGDNNLIDMDIFFITFTTSYVIVIFG 1061
             SSYEGNP LCG PLP   +    ++ P AS  +E ++N +DM+ F+ +F  SY  VI G
Sbjct: 828  VSSYEGNPNLCGLPLPKSCTEREASSAPRASAMDE-ESNFLDMNTFYGSFIVSYTFVIIG 886

Query: 1062 IVAVLYVNARWRRRWFYLVEMWTTS 1086
            +  VLY+N +WRR WF  V++  +S
Sbjct: 887  MFLVLYINPQWRRAWFDFVDICISS 911

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098008|ref|XP_002334579.1| predicted protein [Populus trichocarpa] gi|222873205|gb|EEF10336.1| predicted protein [Populus trichocarpa]

 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/1139 (41%), Positives = 637/1139 (55%), Gaps = 110/1139 (9%)

Query: 7    KMVVMFVLLLIIFEGGW---SEGCLNHERFALLQLKLFFIDPY--NYLLDWVDDEGATDC 61
            ++    +L L    G W     GCL  ER  LL+++   I+P+  ++   WVD    ++C
Sbjct: 5    RIGAWMLLALFTLVGEWHGRCYGCLEEERIGLLEIQSL-INPHGVSWRDHWVDTN--SNC 61

Query: 62   CQWERVSCNNTMGRVVVLDL---SQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVE 118
            C+W  + C+NT  RV+ L L      H G+ W LNASLF PF++L  LDL    + GC+E
Sbjct: 62   CEWRGIECDNTTRRVIQLSLWGARDFHLGD-WVLNASLFQPFKELRGLDLGGTGLVGCME 120

Query: 119  NEGLERLSRLSNLKMLNLVGNLFNN--SILSSL-ARLSSLTSLDLSANRL-KGSIDIKEL 174
            NEG E LS  S L  L+L  N F N  SILS     LS+L SLDLS N L  GS  +K L
Sbjct: 121  NEGFEVLS--SKLSNLDLRVNKFTNDKSILSCFNGNLSTLKSLDLSFNGLTAGSGGLKVL 178

Query: 175  DS-LRDLEKLNIGRNMIDKFV--------------------VSKGPKRLS-RLNNLKVFD 212
             S L+ LE L +  N  +  +                       G K LS RL  L+   
Sbjct: 179  SSRLKKLENLLLRENQYNDSIFPSLTGFSSLKSLYLSGNQLTGSGLKDLSSRLKKLENLH 238

Query: 213  LSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEV 272
            LS    N+SI  SL   SSL+SL L  N+L GS        L  LE LD+S+N I N  +
Sbjct: 239  LSEIQCNDSIFPSLTGFSSLKSLYLSGNQLTGSGFEIISSHLGKLENLDLSHNNIFNDSI 298

Query: 273  PQACSGLRKLSYLHLLRV------------GIRDGSKLLQSMGSFPSLNTLDLSYNNFTE 320
                S LR LS+L  L +            G+R+   +LQS+ S+PSL TL L   N ++
Sbjct: 299  ---LSHLRGLSHLKSLNLSGNMLLGSTTINGLRN-LDILQSLRSWPSLKTLSLKDTNLSQ 354

Query: 321  TVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLD 380
                    F +  +L+EL++D+  + +N  FLQ  G ++P+++ LS++   +  +     
Sbjct: 355  GT------FFNSSTLEELHLDNTSLPIN--FLQNTG-ALPALKVLSVAECDL--HGTLPA 403

Query: 381  QGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIED 440
            QG C L +L++L +A N+  G+LP CL N++SL++LDVS NQ  G+I+  PL  L S+E 
Sbjct: 404  QGWCELKNLKQLDLARNNFGGALPDCLGNLSSLQLLDVSDNQFTGNIAFGPLTKLISLEF 463

Query: 441  LILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYR 500
            L LS+N F++PIS++P  NHS LK F +ENN +  E     +L  P FQL    LSS   
Sbjct: 464  LSLSNNLFEVPISMKPFMNHSSLKFFSSENNRLVTESAAFDNLI-PKFQLVFFRLSSSPT 522

Query: 501  D---GITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLP 557
                 +    FLY Q+DL  + LSH  +   FP+WLL+NNT++ QL L  +S VG  +L 
Sbjct: 523  SEALNVEILDFLYYQYDLRTLDLSHNNIFGMFPSWLLKNNTRMEQLYLSENSFVGTLQLL 582

Query: 558  IHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLD 617
             H +  +  LD+S NN  G IP +I  I   L +  ++ N   G IPS  GN + L FLD
Sbjct: 583  DHPYPNMTELDISNNNINGQIPKDICLIFPNLWILRMADNGFTGYIPSCLGNFSSLSFLD 642

Query: 618  LSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIP 677
            LSNNQL+    E L     +++ L LSNN+L G + +  FN +   +L L GN+F G+I 
Sbjct: 643  LSNNQLSTVKLEQL----TTIQVLKLSNNSLGGQIPTSVFNSSISQYLYLGGNYFWGQIS 698

Query: 678  Q-SLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQI 736
               L        L LSNN  SG +PR   N T    + + KN  +GPIP +FC+L  L+ 
Sbjct: 699  DFPLYGWKVWSVLDLSNNQFSGMLPRSFFNFTYDEVLDLSKNLFKGPIPRDFCKLDRLEF 758

Query: 737  LDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNI 796
            LD+SDN +SG +PSC++   I  +HLSKN L G L  G F+N  +L+ +DL  N   G+I
Sbjct: 759  LDLSDNYLSGYMPSCFNPPQITHIHLSKNRLSGPLTYG-FYNSSSLVTMDLRDNSFIGSI 817

Query: 797  PDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHER 856
            P+ +  LS LS L+L  NN +GE+ +QLC L QL +LD+S N L G +PSC  N TL E 
Sbjct: 818  PNWIGNLSSLSVLLLRANNFDGELAVQLCLLEQLSILDVSQNQLSGPLPSCLGNLTLKEI 877

Query: 857  YNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNR 916
              N                                   I ++  G+V S + G+DLS N 
Sbjct: 878  PENARG------------------------------SRIWFSVMGKVLSYMYGIDLSNNN 907

Query: 917  LIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVEL 976
             +G IPP+ GNL+KI +LNLSHNNL G IP+TFSNL+ IESLDLSYN L+  IP QL E+
Sbjct: 908  FVGAIPPEFGNLSKILSLNLSHNNLTGSIPATFSNLKQIESLDLSYNNLNGAIPPQLTEI 967

Query: 977  NTLAVFSVAYNNLSGKIPERAAQFATF-NESSYEGNPFLCGPPLPICISPTTMP-EASPS 1034
             TL VFSVAYNNLSG+ PER  QF TF +E+ YEGNPFLCGPPL    S   +P +  P+
Sbjct: 968  TTLEVFSVAYNNLSGRTPERKYQFGTFDDENCYEGNPFLCGPPLRNNCSEEAVPLQPVPN 1027

Query: 1035 NE-GDNNLIDMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEMWTTSCYYFVI 1092
            +E GD+  IDM+ F+I+F   Y +V+  I AVLY+N  WRRRW Y +E    +CYYFV+
Sbjct: 1028 DEQGDDGFIDMEFFYISFGVCYTVVVMTIAAVLYINPYWRRRWSYFIEDCINTCYYFVV 1086

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073436|ref|XP_002304095.1| predicted protein [Populus trichocarpa] gi|222841527|gb|EEE79074.1| predicted protein [Populus trichocarpa]

 Score =  649 bits (1674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/1122 (40%), Positives = 613/1122 (54%), Gaps = 163/1122 (14%)

Query: 11   MFVLLLIIFEGGW---SEGCLNHERFALLQLKLFFIDPYNY-LLDWVDDEGATDCCQWER 66
            M + +L+   G W     GCL  ER  LL+++   IDP  + L  WVD   +++CC+W+ 
Sbjct: 5    MLLAILLTLVGEWYGRCYGCLEEERIGLLEIQSL-IDPDGFSLRHWVD---SSNCCEWDG 60

Query: 67   VSCNNTMGRVVVLDLSQTHRGEY--WYLNASLFTPFQQLESLDLRDNDIAGCVENEGLER 124
            + C+NT  RV+ L LS      +  W LNASLF PF++L+SL+LR N + GC+ENEG E 
Sbjct: 61   IECDNTTRRVIELSLSGARDQSFGDWVLNASLFLPFKELQSLELRFNGLVGCLENEGFEV 120

Query: 125  LSRLSNLKMLNLVGNLFNN--SILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEK 182
            LS  SNL+ L+L  N FNN  SILS +  LS+L SLDLS N L GS              
Sbjct: 121  LS--SNLRNLDLSDNRFNNDKSILSCMTGLSTLKSLDLSGNGLTGS-------------- 164

Query: 183  LNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRL 242
               G  +I           L +L+NL   DLS N+FN+SILS L  LS L+SL L  N L
Sbjct: 165  ---GFEIIS--------SHLEKLDNL---DLSYNIFNDSILSHLRGLSYLKSLNLSGNML 210

Query: 243  EGSIDVK-EFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQS 301
             GS  V   F + S LEEL                       YL    + I      LQ+
Sbjct: 211  LGSTTVNGTFFNSSTLEEL-----------------------YLDRTSLPI----NFLQN 243

Query: 302  MGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPS 361
            +G+ P L  L ++  +   T+    QG+   K+L++L +              +G S+P 
Sbjct: 244  IGALPDLKVLSVAECDLHGTL--PAQGWCELKNLRQLDLSGNN----------LGGSLPD 291

Query: 362  IQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSN 421
                                                        CL N++SL++LDVS N
Sbjct: 292  --------------------------------------------CLGNLSSLQLLDVSEN 307

Query: 422  QLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESH 481
            Q  G+I+S PL +LTS+E L LS+N F++PIS++P  NHS LK F +ENN++  E     
Sbjct: 308  QFTGNIASGPLTNLTSLEFLSLSNNLFEVPISMKPFMNHSSLKFFSSENNKLVTEPAAFD 367

Query: 482  SLTTPNFQLQSLLLSSGYRD-GITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKL 540
            +L  P FQL    LS       +  P FLY Q+D+  + LSH  +   FP+WLL+NNT+L
Sbjct: 368  NL-IPKFQLVFFRLSKTTEALNVKIPDFLYYQYDIRVLDLSHNNITAMFPSWLLKNNTRL 426

Query: 541  RQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALD 600
             QL L N+S VG  +L  H +  +  LD+S NN  G IP +I  I   +    ++ N   
Sbjct: 427  EQLYLSNNSFVGTLQLQDHPYLNMTELDISNNNMNGQIPKDICLIFPNMWSLRMANNGFT 486

Query: 601  GSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLT 660
            G IPS  GN++ L+ LDLSNNQL+    E L     ++  L LSNNNL G + +  FN +
Sbjct: 487  GCIPSCLGNISSLKILDLSNNQLSIVKLEQL----TTIWFLKLSNNNLGGQLPTSVFNSS 542

Query: 661  NLIWLQLEGNHFVGEIPQSLSKCSSL-QGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNH 719
             L +L L GN+F G+I   L     +   L LS+N  SG +PRWL N T L  I + KN+
Sbjct: 543  TLEYLYLHGNNFWGQISDFLLYGWKMWSTLDLSDNQFSGMLPRWLVNSTGLIAIDLSKNY 602

Query: 720  IEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNC 779
             +GPI  +FC+L  L+ LD+S+NN+SG +PSC+    I  VHLS+N L G L  G F+N 
Sbjct: 603  FKGPILRDFCKLNQLEYLDLSENNLSGYIPSCFSPPQITHVHLSENRLSGPLTYG-FYNN 661

Query: 780  LTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNN 839
             +L+ +DL  N+  G+ P+ +  LS LS L+L  N+ +GE+P+QLC L QL +LD+S N 
Sbjct: 662  SSLVTMDLRDNNFTGSFPNWIGNLSSLSVLLLRANHFDGELPVQLCLLEQLSILDVSQNQ 721

Query: 840  LHGHIPSCFDNTTLHERYNN-----GSSL--QPFETSFV-IMGGMDVDPKKQILESF--- 888
            L G +PSC  N T  E         G+ +  +  E ++   MG   V+    + + F   
Sbjct: 722  LSGPLPSCLGNLTFKESSQKTLADLGADVLSRSIEKAYYETMGPPLVESMYNLRKGFLLN 781

Query: 889  ------DFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLA 942
                  +FTTK++ Y Y+G+  S +SG+DLS N  +G IPP+ G+L+KI +LNLSHNNL 
Sbjct: 782  FTEEVIEFTTKNMYYRYKGKTLSYMSGIDLSNNNFVGAIPPEFGDLSKILSLNLSHNNLT 841

Query: 943  GPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFAT 1002
            G IP+TFSNL+ IESLDLSYN L+  IP QL ++ TL VFSVA+NNLSG  PER  QF T
Sbjct: 842  GSIPATFSNLKQIESLDLSYNNLNGVIPPQLTDITTLEVFSVAHNNLSGNTPERKYQFGT 901

Query: 1003 FNESSYEGNPFLCGPPL------------PICISPTTMPEASPSNEGDNNLIDMDIFFIT 1050
            F+ES YEGNPFLCGPPL            P+   P          +GD+  IDM+ F+I 
Sbjct: 902  FDESCYEGNPFLCGPPLRNNCSEEAVPSQPVPSQPVPSQPVPYDEQGDDGFIDMEFFYIN 961

Query: 1051 FTTSYVIVIFGIVAVLYVNARWRRRWFYLVEMWTTSCYYFVI 1092
            F   Y +V+  IV VLY++  WRRRW Y +E    +CYYFV+
Sbjct: 962  FGVCYTVVVMIIVVVLYIDPYWRRRWSYFIEDCIDTCYYFVV 1003

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476165|ref|XP_002283141.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  638 bits (1646), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 413/936 (44%), Positives = 568/936 (60%), Gaps = 45/936 (4%)

Query: 179  DLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLY 238
            +L+ LN+  NM+       G +R  +LNNL++ DLS N  + SIL+SL  LSSL+SL L 
Sbjct: 544  ELKILNLSTNMLVTLGDDDGSERPFKLNNLELLDLSNNTLDISILASLTELSSLKSLSLG 603

Query: 239  DNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKL 298
             N LEGSI  +E  +L NLEELD+S N++++F        LRKL  LHL        +  
Sbjct: 604  TNILEGSI--QELAALHNLEELDLSKNDLESFITTTGLKSLRKLRVLHLETNDFNIST-- 659

Query: 299  LQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKEL-YMDDARIALNTSFLQIIGE 357
            L+S+G    L  L L  N    +VT          +L+ L  +D +   +++S LQI+ E
Sbjct: 660  LKSLGRLSLLKELYLGGNKLEGSVT-----LRELNNLRNLEVLDLSSTNISSSILQIV-E 713

Query: 358  SMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILD 417
             M S++ LSL ++ + N S+T  QGLC L +LQEL ++DN   GS+  CL N+TSLR LD
Sbjct: 714  VMTSLKALSLRSNGI-NGSQTALQGLCKLKNLQELDLSDNGFEGSVSPCLGNLTSLRALD 772

Query: 418  VSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFD--AENNEINA 475
            +S N+  G++ SS    L  +E L LS N FQ    +     HS+L++ D    NN +  
Sbjct: 773  LSKNRFSGNLDSSLFAGLMKLEFLSLSHNVFQTFPPISSFAKHSKLEVLDLICGNNTL-- 830

Query: 476  EIIESHSLT-TPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLL 534
             ++ES   T  P+FQL+   LSS      + P FL+ QHDL  V LS+  + E+FP WL+
Sbjct: 831  -LLESEDQTWVPSFQLKVFRLSSCILKTGSIPSFLHYQHDLRVVDLSNSSLEEDFPTWLM 889

Query: 535  ENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNI 594
            +NNT+L +L+L N+SL G F LP   +     +D+S N  QG +P  I   L  L   N+
Sbjct: 890  KNNTRLEELNLKNNSLTGYFHLPYRPNIFTSAIDISNNLLQGQMPSNISVSLPNLMFLNV 949

Query: 595  SMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFS 654
            S N+ +GSIPS FG M  L FLDLSNN  TG IPE LAMGC SL  L LS N+L G MF 
Sbjct: 950  SRNSFEGSIPS-FGGMRKLLFLDLSNNLFTGGIPEDLAMGCPSLEYLILSKNDLHGQMFP 1008

Query: 655  RNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHII 714
            R  NL +L  L+L+ NHF G+IP  LS  S L+ L++S+NS+SGK+P W+GN++ L  ++
Sbjct: 1009 RVSNLPSLRHLELDDNHFSGKIPD-LSNSSGLERLYVSHNSISGKLPGWIGNMSNLAALV 1067

Query: 715  MPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEG 774
            MP N +EGPIP+EFC L  L++LD+S+NN+SGSLPSC+    +  VHL +N L G L + 
Sbjct: 1068 MPNNSLEGPIPVEFCSLDALELLDLSNNNLSGSLPSCFSPSLLIHVHLQENHLTGPLTKA 1127

Query: 775  TFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLD 834
             F   + L  LD+  N+L+G IPD +   S LS L+L  N+ +G++P QLC+L+++ +LD
Sbjct: 1128 -FTRSMDLATLDIRNNNLSGGIPDWISMFSGLSILLLKGNHFQGKIPYQLCQLSKITILD 1186

Query: 835  LSNNNLHGHIPSCFDNTTLHERYNNGS-----------------SLQPFETSFVIMGGMD 877
            LS N+L GHIPSC +       + +G                    Q  E S V +    
Sbjct: 1187 LSYNSLSGHIPSCLNKIQFRTGFRSGKFSIISYFPSPGFSSYLYHSQHIELSQVNVNSYP 1246

Query: 878  VDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLS 937
            +   K + E   FTTK+ T  Y+G     ++G+DLS N+L G IPP+IGNL+++  LNLS
Sbjct: 1247 IAYDKAMAE---FTTKNRTDFYKGNFLYSMTGIDLSSNKLTGAIPPEIGNLSQVHALNLS 1303

Query: 938  HNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERA 997
            HN L GPIP+ FS L++IESLDLSYN L+  IP +L EL  LAVFSVAYNNLSGKIPE  
Sbjct: 1304 HNILTGPIPAAFSGLKSIESLDLSYNNLTGTIPGELTELTNLAVFSVAYNNLSGKIPEMT 1363

Query: 998  AQFATFNESSYEGNPFLCGPPLPI-CISPTTMPEASPSNEGDNNLIDMDIFFITFTTSYV 1056
            AQF TF E+SY GNP+LCG  L   C       E     +G   L D DIF+++F  SYV
Sbjct: 1364 AQFGTFLENSYVGNPYLCGSLLRKNCSRAEEEAEIEEGEKG---LTDRDIFYVSFGASYV 1420

Query: 1057 IVIFGIVAVLYVNARWRRRWFYLVEMWTTSCYYFVI 1092
            +V+ G+ AVLY+N  WR++WF+++++  T C  FV+
Sbjct: 1421 VVLLGVAAVLYINGGWRKKWFHVIDVLITCCCNFVM 1456

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142481|ref|XP_002324585.1| predicted protein [Populus trichocarpa] gi|222866019|gb|EEF03150.1| predicted protein [Populus trichocarpa]

 Score =  633 bits (1633), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 374/794 (47%), Positives = 506/794 (63%), Gaps = 52/794 (6%)

Query: 324  TTTQGFPHFKSLKELYMDDARI-ALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLD-Q 381
             T+ GF     L +L + +     +N S L  + E + S+++L+L N+ +     ++D +
Sbjct: 16   ATSTGFERSLRLNKLEILELSFNKINDSTLSFL-EGLSSLKHLNLDNNQLKG---SIDMK 71

Query: 382  GLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDL 441
            GLC L  LQEL ++ NDL G LP CL N+ +L++LD+S N   G+IS S +  LTSI DL
Sbjct: 72   GLCELKQLQELDISYNDLNG-LPSCLTNLNNLQVLDISFNNFSGNISLSRIGSLTSIRDL 130

Query: 442  ILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRD 501
             LSDNHFQIPISL P FN S LK  + ++NEI       H+L  P FQLQ L L+  +  
Sbjct: 131  KLSDNHFQIPISLGPFFNLSNLKNLNGDHNEIYESTELVHNLI-PRFQLQRLSLAC-HGF 188

Query: 502  GITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSH 561
            G TFPKFLY QHDL++V LSHIK+  EFP+WLL+NNTKL  L LVN SL G  +LP  SH
Sbjct: 189  GGTFPKFLYYQHDLQFVDLSHIKIIGEFPSWLLQNNTKLEALYLVNSSLSGSLQLPNDSH 248

Query: 562  KQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNN 621
              L  LD+S+N+ Q  IP +IG     L   N+S N   GSIPSS  NM+ L  LDLSNN
Sbjct: 249  VNLSRLDISRNHIQNQIPTKIGAYFPWLEFLNLSRNYFSGSIPSSISNMSSLGVLDLSNN 308

Query: 622  QLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLS 681
             L+G IPE L  GC+SLR L LSNN+L+G  F R+FNL  L  L L GN   G +P SLS
Sbjct: 309  GLSGNIPEQLVEGCLSLRGLVLSNNHLKGQFFWRSFNLAYLTDLILSGNQLTGILPNSLS 368

Query: 682  KCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISD 741
              S L+ L +S N+LSGKIPRW+G ++ L+++ + +N++ G +P  FC  R +       
Sbjct: 369  NGSRLEALDVSLNNLSGKIPRWIGYMSSLQYLDLSENNLYGSLPSSFCSSRTMT------ 422

Query: 742  NNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVD 801
                             +V+LSKN L G L  G    CL+L  LDLS+N+  G IP+ + 
Sbjct: 423  -----------------EVYLSKNKLEGSLI-GALDGCLSLNRLDLSHNYFGGGIPESIG 464

Query: 802  GLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGS 861
             L +LS+L+L +NNLEG++P QLC+L +L L+DLS+N+L GHI  C   T+  +R    +
Sbjct: 465  SLLELSFLLLGYNNLEGKIPSQLCKLEKLSLIDLSHNHLFGHILPCLQPTSKWQRERE-T 523

Query: 862  SLQPFETSFVIMGGMDVDPK----------KQILESFDFTTKSITYTYQGRVPSLLSGLD 911
            SL P   S   +G  +  P+            + +S +FTTKSI+Y+++G +   +SG+D
Sbjct: 524  SLNPSGNS---LGRENRGPQIVFPVPAVEDPSMNKSVEFTTKSISYSFKGIILKYISGID 580

Query: 912  LSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPY 971
            LSCN L G IP ++GNL+ IQ LNLSHN+L GPIP TFSNL+ IESLDLSYN L+ +IP 
Sbjct: 581  LSCNNLTGEIPVELGNLSNIQVLNLSHNSLTGPIPPTFSNLKEIESLDLSYNNLNGEIPR 640

Query: 972  QLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLP----ICISPTT 1027
            QL++LN L+ FSVA+NNLSGK PE  AQF+TFN+S YEGNP LCGPPL       + P+ 
Sbjct: 641  QLLDLNFLSAFSVAHNNLSGKTPEMVAQFSTFNKSCYEGNPLLCGPPLARNCTRALPPSP 700

Query: 1028 MPEASPSNEGDNNLIDMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEMWTTSC 1087
            +P +    + +N +IDM+ F +TF+ +Y++V+  I +VLY+N RWRR WFY +     +C
Sbjct: 701  LPRSQTHKKEENGVIDMEAFIVTFSVAYIMVLLTIGSVLYINPRWRRAWFYFIGESINNC 760

Query: 1088 YYFVIDNL-IPTRF 1100
            YYF++DNL +P RF
Sbjct: 761  YYFLVDNLPVPARF 774

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073422|ref|XP_002304093.1| predicted protein [Populus trichocarpa] gi|222841525|gb|EEE79072.1| predicted protein [Populus trichocarpa]

 Score =  620 bits (1598), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 421/1055 (39%), Positives = 571/1055 (54%), Gaps = 149/1055 (14%)

Query: 63   QWERVSCNNTMGRVVVLDL--SQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENE 120
            +W R+ C+NT  RV+ L L  ++  R   W LNASLF PF++L+SLDL  N + GC+ENE
Sbjct: 28   RWPRIECDNTTKRVIQLSLFDARDFRLGDWVLNASLFLPFKELQSLDLGYNGLVGCLENE 87

Query: 121  GLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDL 180
            G + LS                          S L  L LS NR      I  L     L
Sbjct: 88   GFQVLS--------------------------SKLRELGLSDNRFNNDKSI--LSCFNGL 119

Query: 181  EKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDN 240
            + L+                  SRL  L+  DLSGN  N++I  +L   SSL+SL L  N
Sbjct: 120  KVLS------------------SRLKKLENLDLSGNQCNDTIFPALTGFSSLKSLDLSGN 161

Query: 241  RLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQ 300
            +L                                  SGLRKL +L  LR           
Sbjct: 162  QL--------------------------------TASGLRKLDFLQSLR----------- 178

Query: 301  SMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMP 360
                  SL TL L   N ++        F +  +L+EL++D+  + +N  FLQ    ++P
Sbjct: 179  ------SLKTLSLKDTNLSQGT------FFNSSTLEELHLDNTSLPIN--FLQNT-RALP 223

Query: 361  SIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSS 420
            +++ LS+    +        QG C L +L++L +A N+  G+LP CL N++SL +LDVS 
Sbjct: 224  ALKVLSVGECDLHGTLPA--QGWCELKNLKQLDLARNNFGGALPDCLGNLSSLTLLDVSE 281

Query: 421  NQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIES 480
            NQ  G+I S PL +L S+E L LS+N F++P S++P  NHS LK F +ENN +  E    
Sbjct: 282  NQFTGNIVSGPLTNLVSLEFLSLSNNLFEVPTSMKPFMNHSSLKFFSSENNRLVTEPAAF 341

Query: 481  HSLTTPNFQLQSL-LLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTK 539
             +L  P FQL  L LL +     +  P FLY Q+DL  + LSH  +   FP+WLL+NNT+
Sbjct: 342  DNLI-PKFQLVFLSLLKTTEALNVHIPDFLYYQYDLRVLDLSHNNITGMFPSWLLKNNTR 400

Query: 540  LRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNAL 599
            + QL L ++S VG  +LP H +  +  LD+S NN    IP +I  IL  L    +  N  
Sbjct: 401  MEQLDLSDNSFVGTLQLPDHPYPNMTKLDISNNNMNSQIPKDICLILPNLESLRMVKNGF 460

Query: 600  DGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNL 659
             G IPS  GN++ L  LDLSNNQL+    E L     +L  L LSNNNL G +    FN 
Sbjct: 461  TGCIPSCLGNISSLSVLDLSNNQLSTVKLELLT----TLMFLKLSNNNLGGQIPISVFNS 516

Query: 660  TNLIWLQLEGNHFVGEIPQ-SLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKN 718
            + L +L L GN+F G+I   SL +      L LSNN  SG +PRW  N TVL  I + KN
Sbjct: 517  STLEFLYLNGNNFCGQILYLSLYEQKMWFVLDLSNNQFSGMLPRWFVNSTVLEAIDLSKN 576

Query: 719  HIEGPIPLEF-CQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFF 777
            H +GPIP +F C+   L+ LD+S+NN+SG +PSC+    I  +HLSKN L G L  G F+
Sbjct: 577  HFKGPIPRDFFCKFDHLEYLDLSENNLSGYIPSCFSPPQITHLHLSKNRLSGPLTYG-FY 635

Query: 778  NCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSN 837
            N  +L+ +DL  N    +IP+ +  LS LS L+L  N+ +           QL +LD+S 
Sbjct: 636  NSSSLVTMDLQDNSFTDSIPNWIGNLSSLSVLLLRANHFD----------EQLSILDVSQ 685

Query: 838  NNLHGHIPSCFDNTTLHER----------YNNGSSLQPFETSFVIMGGMDVDPK------ 881
            N L G +PSC  N T  E           ++   S++  +T +  MG   VD        
Sbjct: 686  NQLSGPLPSCLGNLTFKESSQKAILDFVIFDISRSIE--KTYYETMGPPLVDSVYLGKGF 743

Query: 882  --KQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHN 939
                I E  +FTTK ++Y Y+G+V + +SG+DLS N  +G IPP+ GNL++I +LNLSHN
Sbjct: 744  GLNLIEEVIEFTTKKMSYGYKGKVLNYMSGIDLSNNNFVGAIPPEFGNLSEILSLNLSHN 803

Query: 940  NLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQ 999
            NL G IP+TFSNL+ IESLDLSYN L+  IP QL E+ TL VFSVA+NNLSGK PER  Q
Sbjct: 804  NLTGSIPATFSNLKQIESLDLSYNNLNGVIPPQLTEITTLEVFSVAHNNLSGKTPERKYQ 863

Query: 1000 FATFNESSYEGNPFLCGPPLP-ICISPTTMPEASPSNE-GDNNLIDMDIFFITFTTSYVI 1057
            F TF+ES YEGNPFLCGPPL   C       +  P++E GD+  +DM+ F+I+F   Y +
Sbjct: 864  FGTFDESCYEGNPFLCGPPLRNNCSEEAVSSQPVPNDEQGDDGFVDMEFFYISFGVCYTV 923

Query: 1058 VIFGIVAVLYVNARWRRRWFYLVEMWTTSCYYFVI 1092
            V+  I AVLY+N  WRRRW + +E    +CYYF +
Sbjct: 924  VVMTIAAVLYINPYWRRRWLFFIEDCIDTCYYFGV 958

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124658|ref|XP_002330078.1| predicted protein [Populus trichocarpa] gi|222871503|gb|EEF08634.1| predicted protein [Populus trichocarpa]

 Score =  619 bits (1597), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 439/1060 (41%), Positives = 594/1060 (56%), Gaps = 84/1060 (7%)

Query: 93   NASLF---TPFQQLESLDLRDNDIAGCVENEGLERLS-RLSNLKMLNLVGNLFNNSILSS 148
            N S+F   T F  L+SLDL  N++ G     GL+ LS RL  L+ L+L  N  N+SI SS
Sbjct: 188  NDSIFSSITGFSSLKSLDLSYNEVTG----SGLKVLSSRLKRLENLDLSDNQCNDSIFSS 243

Query: 149  LARLSSLTSLDLSANRLKGS--IDIKE------LDSLRDLEKLNIGRNMIDKFVVSKGPK 200
            L   SSL SL+LS N+L GS  + I++      L   + +  L    N +  F V     
Sbjct: 244  LTGFSSLKSLNLSYNQLTGSSMVSIEKNGYYSFLQYTKWILPLYPSDNFLSGFQV----- 298

Query: 201  RLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEEL 260
             +S L NL+   L  N  NN+ILSSL+  S+L+SL L  N+  GS  +K    L NLEEL
Sbjct: 299  LVSGLRNLEELHLYSNKLNNNILSSLSGFSTLKSLDLSYNKFTGSTGLK---GLRNLEEL 355

Query: 261  DMSYNEIDN---------------------FEVPQACSGLRKLSYLHLLRVGIRDGSKLL 299
             + +N+ +N                     F       GLR L  L+L     ++ S L+
Sbjct: 356  YLGFNKFNNSILSSLSGFSTLKSLDLSNNKFTGSIGLKGLRNLETLNLEYTDFKE-SILI 414

Query: 300  QSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESM 359
            +S+G+ PSL TL  SY+ F        +G  +  SL+E+++  + +    SFL+ IG  +
Sbjct: 415  ESLGALPSLKTLYASYSKFKHF----GKGLSNSSSLEEVFLYYSYLP--ASFLRNIGH-L 467

Query: 360  PSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVS 419
             +++ LSL+    S  S    +G C L +L+ L ++ N+L+G LP CL N++SLR LD+S
Sbjct: 468  STLKVLSLAGVDFS--STLPAEGWCELKNLEHLFLSRNNLKGVLPPCLGNLSSLRSLDLS 525

Query: 420  SNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIE 479
             NQL G+I+ S L HL  +E L +S NHFQ+P S     N S LK F  +NNE+      
Sbjct: 526  DNQLEGNIALSHLSHLPQLEYLSVSYNHFQVPKSFGSFMNLSNLKFFACDNNELIPA--P 583

Query: 480  SHSLTTPNFQL----QSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIK-MNEEFPNWLL 534
            S     P FQL     S   S  +  G  FP FL +Q+DL  V LSH K + E FP+WL 
Sbjct: 584  SFQPLVPKFQLLFFSASNCTSKPHEAG--FPNFLQSQYDLVVVDLSHNKFVGEPFPSWLF 641

Query: 535  ENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNI 594
            ENNTKL +L L + S +GP +LP H    L+ +D+S N+  G I   I  I  RL  F +
Sbjct: 642  ENNTKLNRLYLRDTSFIGPLQLPQHPTPNLQTVDMSGNSIHGQIARNICSIFPRLKNFMM 701

Query: 595  SMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEH-LAMGCVSLRSLALSNNNLEGHMF 653
            + N+L G IP  FGNM+ L +LDLSNN ++ E+ EH       SL  L LSNNN +G + 
Sbjct: 702  ANNSLTGCIPPCFGNMSSLGYLDLSNNHMSCELLEHNFPTVGSSLWFLKLSNNNFKGRLP 761

Query: 654  SRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGN--LTVLR 711
               FN+T L++L L+GN   G++  + S  SS     +SNN LSG +PR +GN  L  L+
Sbjct: 762  LSVFNMTGLLYLFLDGNKLAGQVSDTFSLASSFLWFDISNNILSGMLPRGIGNSSLNSLQ 821

Query: 712  HIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQL 771
             I + +NH EG IP+E+     L+ LD+S+NN+SGSLP  ++ + +  VHL  N L G L
Sbjct: 822  GIDLSRNHFEGTIPIEYFNSSGLEFLDLSENNLSGSLPLGFNALDLRYVHLYGNRLSGPL 881

Query: 772  KEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQ 831
                F+N  +L  LDL  N+L G IP+ +D LS+LS  +L  N   G++P QLC+L +L 
Sbjct: 882  PF-DFYNLSSLATLDLGDNNLTGPIPNWIDSLSELSIFVLKSNQFNGKLPHQLCKLRKLS 940

Query: 832  LLDLSNNNLHGHIPSCFDN---TTLHERY----NNGSSLQPFETSFVIMGGMDVDPKKQI 884
            +LDLS NN  G +PSC  N   T   E+       GS     E  F  +GG        I
Sbjct: 941  ILDLSENNFSGLLPSCLRNLNFTASDEKTLDAPRTGSDYGSGEEIFASIGGRGFSLDDNI 1000

Query: 885  LE-------SFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLS 937
            L        S + T K   YTY+G +   +S +DLSCNR  G IP + GNL+ I +LNLS
Sbjct: 1001 LWAEISVKISVELTAKKNFYTYEGDILRYMSVMDLSCNRFNGEIPTEWGNLSGIYSLNLS 1060

Query: 938  HNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERA 997
             NNL G IPS+F NL+ IESLDLS+N L+ +IP QLVEL  L VF+V+YNNLSG+ PE  
Sbjct: 1061 QNNLTGLIPSSFFNLKQIESLDLSHNNLNGRIPAQLVELTFLEVFNVSYNNLSGRTPEMK 1120

Query: 998  AQFATFNESSYEGNPFLCGPPLPICISPTTMPEASPSNE--GDNNLIDMDIFFITFTTSY 1055
             QFATF+ESSY+GNP LCGPPL      T  P A   N+  GD   IDMD F+ +F   Y
Sbjct: 1121 NQFATFDESSYKGNPLLCGPPLQNSCDKTESPSARVPNDFNGDGGFIDMDSFYASFGVCY 1180

Query: 1056 VIVIFGIVAVLYVNARWRRRWFYLVEMWTTSCYYFVIDNL 1095
            +IV+  I AVL +N  WRRRWFY +E    +C  F+  N 
Sbjct: 1181 IIVVLTIAAVLCINPHWRRRWFYFIEECIDTCCCFLAINF 1220

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482735|ref|XP_003632821.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  619 bits (1595), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 429/1144 (37%), Positives = 611/1144 (53%), Gaps = 110/1144 (9%)

Query: 4    SKSKMVVMFVLLLIIFEGGWSEGCLNHERFALLQLKLFFI---DPYNYLL-DWVDDEGAT 59
            S S   +M+V +L++ +    +GC+  E+  LL+ K F     +  ++LL  W+D+   +
Sbjct: 3    SLSSKYLMWVFILLLVQICECKGCIEEEKMGLLEFKAFLKLNDEHADFLLPSWLDN-NTS 61

Query: 60   DCCQWERVSCNNTMGRVVVL---DLSQTHR-----------GEYWYLNASLFTPFQQLES 105
            +CC WERV CN T G+V  L   D+ Q               ++W LN SLF PF++L  
Sbjct: 62   ECCNWERVICNPTTGQVKKLFLNDIRQQQNFLEDNWYYYENAKFWLLNVSLFLPFEELHH 121

Query: 106  LDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRL 165
            L+L  N   G +ENEG + LS+L  L++LNL  N FN +I+  L+ L+SL +L +S N +
Sbjct: 122  LNLSANSFDGFIENEGFKSLSKLKKLEILNLGYNWFNKTIIKQLSGLTSLKTLVVSNNYI 181

Query: 166  KGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSS 225
            +G    +    L  L++L++  N+    +    P  L+ L +L++ DLS NLF+ ++ S 
Sbjct: 182  EGLFPSQGFCQLNKLQELDLSYNLFQGIL----PPCLNNLTSLRLLDLSSNLFSGNLSSP 237

Query: 226  -LARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEV----PQACSGLR 280
             L  L+S   + L  N+ EGS     F + SNL+ + +  N  + FEV    P     L 
Sbjct: 238  LLPNLASQEYIDLSYNQFEGSFSFSSFANHSNLQVVKLGRNN-NKFEVETEYPVGWVPLF 296

Query: 281  KLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYM 340
            +L  L L                   +L  +DLS+NN T                     
Sbjct: 297  QLEALML------------------SNLVVVDLSHNNLTR-------------------- 318

Query: 341  DDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTL--DQGLCPLVHLQELHMADND 398
                      F   + E+   +++L+L N+S+      L  +   C L  LQEL ++ N 
Sbjct: 319  ---------RFANWLLENNTRLEFLALMNNSLMGQLLPLRPNTRFCQLNKLQELDLSYNL 369

Query: 399  LRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLF 458
             +G LP CL N TSLR+LD+S+N   G++SS  L +LTS+E + LS N F+   S     
Sbjct: 370  FQGILPPCLNNFTSLRLLDISANLFSGNLSSPLLPNLTSLEYIDLSYNQFEGSFSFSSFA 429

Query: 459  NHSRLKI------------FDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFP 506
            NHS+L++            F  +N +   E  E      P FQL+ L LSS    G   P
Sbjct: 430  NHSKLQVVILGRDNIKFKEFGRDNKKFEVE-TEYPVGWVPLFQLKVLSLSSCKLTG-DLP 487

Query: 507  KFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRL 566
             FL  Q  L  V LSH  +   FPNWLLENNT+L  L L N+SL+G   LP+  + ++  
Sbjct: 488  GFLQYQFRLVGVDLSHNNLTGSFPNWLLENNTRLEILLLRNNSLMGQL-LPLGPNTRINS 546

Query: 567  LDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGE 626
            LD+S N   G +   +  ++  +T  N+S N  +G IPSS   +  LQ LDLS N  +GE
Sbjct: 547  LDISHNQLDGQLQENVAHMIPNITSLNLSNNGFEGIIPSSIAELRALQILDLSTNNFSGE 606

Query: 627  IPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSL 686
            +P+ L +    L  L LSNN   G +FSR+FNLT L+ L L  N F G +   +S+ S L
Sbjct: 607  VPKQL-LAAKDLEILKLSNNKFHGEIFSRDFNLTGLLCLYLGNNQFTGTLSNVISRISWL 665

Query: 687  QGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISG 746
              L +SNN +SG+IP W+GN+T+LR ++M  N+ +G +P E  QL+ ++ LD+S N +SG
Sbjct: 666  WVLDVSNNYMSGEIPSWIGNMTLLRTLVMGNNNFKGKLPPEISQLQRMEFLDVSQNALSG 725

Query: 747  SLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQL 806
            SLPS      +E +HL  NM  G +    F N   L+ LD+  N L G+IP+ +  L +L
Sbjct: 726  SLPSLKSMEYLEHLHLQGNMFTGLIPR-DFLNSSNLLTLDIRENRLFGSIPNSISALLKL 784

Query: 807  SYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPF 866
              L+L  N L G +P  LC L ++ L+DLSNN+  G IP CF +    E     +    F
Sbjct: 785  RILLLRGNLLSGFIPNHLCHLTEISLMDLSNNSFSGPIPRCFGHIRFGETKKEDNVFGQF 844

Query: 867  ETSF-----VIMGGMDVD------PKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCN 915
               +     ++  G  V       P     +  +F TK+    Y+G +   +SGLDLSCN
Sbjct: 845  MYWYELNSDLVYAGYLVKHWEFLSPTYNEKDEVEFVTKNRHDFYRGGILEFMSGLDLSCN 904

Query: 916  RLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVE 975
             L G IP ++G L+ I+ LNLSHN L G IP +FSNL  IESLDLSYNKL  +IP +LVE
Sbjct: 905  NLTGEIPHELGMLSWIRALNLSHNQLNGSIPKSFSNLSQIESLDLSYNKLGGEIPLELVE 964

Query: 976  LNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLP----ICISPTTMPEA 1031
            LN L VFSVAYNN SG++P+  AQF TF+E SYEGNPFLCG  L       I     P  
Sbjct: 965  LNFLEVFSVAYNNFSGRVPDTKAQFGTFDERSYEGNPFLCGELLKRKCNTSIESPCAPSQ 1024

Query: 1032 SPSNEGDNNLIDMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEMWTTSCYYFV 1091
            S  +E     I+  +FF +FTTSY++++ G V +LY+N  WR RWF  +E    SCYYFV
Sbjct: 1025 SFESEAKWYDINHVVFFASFTTSYIMILLGFVIILYINPYWRHRWFNFIEECIYSCYYFV 1084

Query: 1092 IDNL 1095
             D+L
Sbjct: 1085 FDSL 1088

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482725|ref|XP_003632817.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  616 bits (1589), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 436/1146 (38%), Positives = 628/1146 (54%), Gaps = 67/1146 (5%)

Query: 4    SKSKMVVMFVLLLIIFEGGWSEGCLNHERFALLQLKLFFI---DPYNYLL-DWVDDEGAT 59
            S S   +M+V +L++ +    +GC+  E+  LL+ K F     +  ++LL  W+D+   +
Sbjct: 3    SLSSKYLMWVFILLLVQICGCKGCIEEEKMGLLEFKAFLKLNNEHADFLLPSWIDN-NTS 61

Query: 60   DCCQWERVSCNNTMGRVVVLDLSQTHRGE--------------YWYLNASLFTPFQQLES 105
            +CC WERV CN T GRV  L  +   R +              +W LN SLF PF++L  
Sbjct: 62   ECCNWERVICNPTTGRVKKLFFNDITRQQNFLEDNWYYYENVKFWLLNVSLFLPFEELHH 121

Query: 106  LDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRL 165
            L+L  N   G +ENEG E LS L  L++L++ GN F+ S L SL  ++SL +L +    L
Sbjct: 122  LNLSANSFDGFIENEGFEGLSSLKKLEILDISGNEFDKSALKSLGTITSLKTLAICRMGL 181

Query: 166  KGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSS 225
             GS  I+EL SLR+LE L++  N ++ F +    +  + L+NL+V DLS N  +  + SS
Sbjct: 182  NGSFSIRELASLRNLEVLDLSYNDLESFQL---LQDFASLSNLEVLDLSANSISGIVPSS 238

Query: 226  LARLSSLRSLLLYDNRLEGSIDVKE-----------FDSLSNLEELDMSYNEIDNFEVPQ 274
            +  +SSL+SL L +N L G +  ++           F  L+ L+ELD+SYN      +P 
Sbjct: 239  IRLMSSLKSLSLAENYLNGFLPNQDDWLHVLFSFVGFCQLNKLQELDISYNLFQGI-LPP 297

Query: 275  ACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKS 334
              + L  L  L L    +  G+     + +  SL  +DL+YN+F  + + ++        
Sbjct: 298  CLNNLTSLRLLDL-SSNLYFGNLSSPLLPNLTSLEYIDLNYNHFEGSFSFSSFANHSNLQ 356

Query: 335  LKELYMDDARIAL------NTSFLQIIGESMPSIQYLSLSNSSVSNN-SRTLDQ--GLCP 385
            + +L  ++ +  L      N  F   +   +  I  L + +  VSNN S  +    G C 
Sbjct: 357  VVKLGRNNNKFELGFLHLDNNQFRGTLSNVISRISRLWVLD--VSNNMSGEIPSWIGFCQ 414

Query: 386  LVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSD 445
            L  LQEL ++ N  +G LP CL N+TSLR+LD+S+N   G++SS  L +LTS+E + LS 
Sbjct: 415  LNKLQELDISYNLFQGILPPCLNNLTSLRLLDLSANLFSGNLSSPLLPNLTSLEYINLSY 474

Query: 446  NHFQIPISLEPLFNHSRLK---------IFD---AENNEINAEIIESHSLTTPNFQLQSL 493
            N F+   S     NHS+L+         IF+    +NN+   E  E      P FQL++L
Sbjct: 475  NQFEGSFSFSSFANHSKLQVVILGRYNNIFEEVGGDNNKFEVET-EYPVGWVPLFQLKAL 533

Query: 494  LLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGP 553
             LSS    G     FL  Q  L  V LSH  +   FPNWLLENNT+L+ L L N+SL+G 
Sbjct: 534  FLSSCKLTG-DLLGFLQYQFRLVGVDLSHNNLTGSFPNWLLENNTRLKSLVLRNNSLMGQ 592

Query: 554  FRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFL 613
              LP+  + ++  LD+S N   G +   +  ++  +   N+S N  +G +PSS   +  L
Sbjct: 593  L-LPLGRNTRIDSLDISHNQLDGQLQENVAHMIPNIISLNLSNNGFEGILPSSIAELRAL 651

Query: 614  QFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFV 673
            + LDLS N  +GE+P+ L +    L  L LSNN   G +FSR+FNLT L +L L  N F 
Sbjct: 652  RSLDLSTNNFSGEVPKQL-LAAKDLEILKLSNNKFHGEIFSRDFNLTWLEYLYLGNNQFT 710

Query: 674  GEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRI 733
            G +   + +   L+ L +SNN +SG+IP  +GN+T L  +++  N+ +G +P E  QL+ 
Sbjct: 711  GTLSNVICRSFRLKVLDVSNNYMSGEIPSQIGNMTDLTTLVLGNNNFKGKLPPEISQLQR 770

Query: 734  LQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLN 793
            ++ LD+S N +SGSLPS      +E +HL  NM  G +    F N   L+ LD+  N L 
Sbjct: 771  MEFLDVSQNALSGSLPSLKSMEYLEHLHLQGNMFTGLIPR-DFLNSSNLLTLDIRENRLF 829

Query: 794  GNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTL 853
            G+IP+ +  L +L  L+L  N L G +P  LC L ++ L+DLSNN+  G IP CF +   
Sbjct: 830  GSIPNSISALLKLRILLLGGNLLSGFIPNHLCHLTKISLMDLSNNSFSGPIPKCFGHIRF 889

Query: 854  HERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLS 913
             E     +  + F  S        V       +  +F TK+   +Y+G +   +SGLDLS
Sbjct: 890  GEMKKEDNVFEQFIESGYGFNSHIVYAVYNEKDEVEFVTKNRRDSYKGGILEFMSGLDLS 949

Query: 914  CNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQL 973
            CN L G IP ++G L+ I  LNLSHN L G IP  FSNL  IESLDLSYNKLS +IP +L
Sbjct: 950  CNNLTGEIPHELGMLSWIHALNLSHNQLNGSIPKGFSNLSQIESLDLSYNKLSGEIPLEL 1009

Query: 974  VELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLP----ICISPTTMP 1029
            VELN L VFSVAYNN SG++P+  AQF TF+E SYEGNPFLCG  L       I     P
Sbjct: 1010 VELNFLEVFSVAYNNFSGRVPDTKAQFGTFDERSYEGNPFLCGELLKRKCNTSIESPCAP 1069

Query: 1030 EASPSNEGDNNLIDMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEMWTTSCYY 1089
              S  +E     I+  +FF +FTTSY++++ G V +LY+N  WR RWF  +E    SCYY
Sbjct: 1070 SQSFESEAKWYDINHVVFFASFTTSYIMILLGFVTILYINPYWRHRWFNFIEECIYSCYY 1129

Query: 1090 FVIDNL 1095
            FV D+L
Sbjct: 1130 FVFDSL 1135

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124490|ref|XP_002330036.1| predicted protein [Populus trichocarpa] gi|222871461|gb|EEF08592.1| predicted protein [Populus trichocarpa]

 Score =  610 bits (1573), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 393/971 (40%), Positives = 560/971 (57%), Gaps = 89/971 (9%)

Query: 169  IDIKELD-------SLRDLEKLNIGRNMIDKFVVSKGPKRL-SRLNNLKVFDLSGNLFNN 220
            +++++LD         ++LE L++  N +   + ++G + L S L NLK   L+ N FN+
Sbjct: 48   LEVEDLDLNASLFLPFKELENLDLSGNQLVGGLKNQGFQVLASGLRNLKELYLNDNKFND 107

Query: 221  SILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLS----NLEELDMSYNEIDNFEVPQAC 276
            SIL+SL+  S+L+SL L +NR   +ID+K F  L+    NLE+LD+SYN++++       
Sbjct: 108  SILTSLSGFSTLKSLYLSNNRFTVTIDLKGFQVLASGLRNLEQLDLSYNKLND------- 160

Query: 277  SGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLK 336
                                 +L S+  F +L  LDLS N FT +      G    + L+
Sbjct: 161  --------------------SVLSSLSGFSTLKFLDLSNNRFTGST-----GLNGLRKLE 195

Query: 337  ELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMAD 396
             LY+D       +  ++ +G ++PS++ L    S  ++      +G C L +L+ L ++ 
Sbjct: 196  TLYLDSTDFK-ESILIESLG-ALPSLKTLHARYSRFTH----FGKGWCELKNLEHLFLSG 249

Query: 397  NDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEP 456
            N+L+G LP C  N++SL+ILD+S NQL G+I+ S + HLT +E L +S+N+FQ+PIS   
Sbjct: 250  NNLKGVLPPCFGNLSSLQILDLSYNQLEGNIAFSHISHLTQLEYLSVSNNYFQVPISFGS 309

Query: 457  LFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGIT--FPKFLYNQHD 514
              NHS LK F+ +NNE+ A    S     P F+L+    S+     +   FP FL +Q+D
Sbjct: 310  FMNHSNLKFFECDNNELIAA--PSFQPLVPKFRLRVFSASNCTPKPLEAGFPNFLQSQYD 367

Query: 515  LEYVRLSHIK-MNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNN 573
            L +V LSH K + E FP+WL ENNTKL +L L + S +GP +LP H    L+ +D+S N+
Sbjct: 368  LVFVDLSHNKFVGESFPSWLFENNTKLNRLYLRDTSFIGPLQLPQHPTPNLQTVDMSGNS 427

Query: 574  FQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEH-LA 632
              G I   I  I  RL  F ++ N+L G IP  FGNM+ L++LDLSNN ++ E+ EH L 
Sbjct: 428  IHGQIARNICSIFPRLKNFMMANNSLTGCIPPCFGNMSSLEYLDLSNNHMSCELLEHNLP 487

Query: 633  MGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLS 692
                SL SL LSNNN +G +    FN+T+L +L L+GN F G++  + S  SS     +S
Sbjct: 488  TVGSSLWSLKLSNNNFKGRLPLSVFNMTSLEYLFLDGNKFAGQVSGTFSLASSFSWFDIS 547

Query: 693  NNSLSGKIPRWLGNLTVLRH--IIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPS 750
            NN LSG +PR +GN ++ R   I + +NH EG IP E+     L+ LD+S+NN+SGSLP 
Sbjct: 548  NNLLSGMLPRGIGNSSIYRFQAIDLSRNHFEGTIPKEYFNSYWLEFLDLSENNLSGSLPL 607

Query: 751  CYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLI 810
             +    +  VHL  N L G L    F+N  +L+ LDL YN+L G IP+ +  LS+LS L+
Sbjct: 608  GFLAPHLRHVHLYGNRLTGPLPNA-FYNISSLVTLDLGYNNLTGPIPNWIASLSELSILL 666

Query: 811  LAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERY------------N 858
            L  N   GE+P+QLC L +L +LDLS NN  G +PSC  N    E Y            +
Sbjct: 667  LKSNQFNGELPVQLCLLRKLSILDLSENNFSGLLPSCLSNLDFTESYEKTLVHTSTESRD 726

Query: 859  NGSSLQPFETSFVIMGGMDVD------------PKKQILESFDFTTKSITYTYQGRVPSL 906
            +GS  + F +    +GG ++             P+  +  S + T+K   YTY+G +   
Sbjct: 727  DGSRKEIFAS----IGGRELGNEGFYLFDKILWPEISVKISVELTSKKNFYTYEGDILRY 782

Query: 907  LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 966
            +S +DLSCNR  G IP + GNL+ I  LNLS NN  G IP +FSNL+ IESLDLS+N L+
Sbjct: 783  MSVMDLSCNRFTGEIPTEWGNLSGIYALNLSQNNFNGLIPPSFSNLKQIESLDLSHNNLN 842

Query: 967  WKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICISPT 1026
             +IP QLVEL  LAVF+V+YN LSG+ PE   QFATF+ESSY+GNP LCGPPL      T
Sbjct: 843  GRIPAQLVELTFLAVFNVSYNKLSGRTPEMKNQFATFDESSYKGNPLLCGPPLQNSCDKT 902

Query: 1027 TMPEASPSNE--GDNNLIDMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEMWT 1084
              P A   N+  GD   IDM  F+ +F   Y+IV+  I AVL +N  WRRRWFY +E   
Sbjct: 903  ESPSARVPNDSNGDGGFIDMYSFYASFGVCYIIVVLTIAAVLCINPDWRRRWFYFIEECM 962

Query: 1085 TSCYYFVIDNL 1095
             +CY F+  N 
Sbjct: 963  DTCYCFLAINF 973

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1102
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.820	0.904	0.329	7.1e-116
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.580	0.590	0.364	1.3e-113
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.512	0.622	0.344	2.1e-109
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.556	0.635	0.310	1.5e-102
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.734	0.907	0.322	2.1e-100
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.747	0.844	0.326	1.4e-96
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.736	0.868	0.315	8.6e-88
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.553	0.520	0.290	4.8e-56
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.556	0.490	0.283	3.5e-46
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.682	0.600	0.266	5.4e-51

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 1142 (407.1 bits), Expect = 7.1e-116, P = 7.1e-116
 Identities = 317/961 (32%), Positives = 465/961 (48%)

Query:   170 DIKELD--SLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNXXXXXXX 227
             D++ LD  S R  E       + D     +G K LSRL NL++ DLS + FNN       
Sbjct:    38 DVRSLDLSSSRSCEDCGFS-GLFDDV---EGYKSLSRLRNLEILDLSSHRFNNSIFPFLN 93

Query:   228 XXXXXXXXXXYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVP-QACSGLRKLSYLH 286
                         N +     VKEF  L+NLE LD+  N   N  +P Q  + LR+   L 
Sbjct:    94 AATSLTTLFLTYNNMHSPFLVKEFKDLTNLEHLDLRGNRF-NGSIPTQDYNSLRRFRKLE 152

Query:   287 LLRVGIR-DGSKLLQSMGSFPSLNTLDLSYNNFXXXXXXXXQGFPHFKSLKEL----YMD 341
             +L +      S++   + S  SL +L L  NN           FP  K L++L     +D
Sbjct:   153 ILDLSDNLFNSRIFPFLNSATSLKSLSLWGNNMGGP-------FPA-KELRDLTNVELLD 204

Query:   342 DARIALNTSF-------LQIIGESMPSIQYXXXXXXXXXXXXRTLD-QGLCPLVHLQELH 393
              +R   N S        L+ +     S               +T    G CP  +++EL 
Sbjct:   205 LSRNRFNGSIPVRALFALRKLKALDLSDNEFSSSVELQGKFAKTKPLSGTCPWKNMEELK 264

Query:   394 MADNDLRGSLPWCLANMTSLRILDVXXXXXXXXXXXXPLIHLTSIEDLILSDNHFQIPIS 453
             +++N L G  P CL ++T LR+LD+             L +L S+E L L  N+F+   S
Sbjct:   265 LSNNKLAGQFPLCLTSLTGLRVLDLSSNQLTGNVPSA-LANLESLEYLSLFGNNFEGFFS 323

Query:   454 LEPLFNHSRLKIFDXXXXXXXXXXXXSHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQH 513
             L  L N S+LK+                S   P FQL  + L S   + +  P FL +Q 
Sbjct:   324 LGLLANLSKLKVLRLDSQSNSLEVEFETSWK-PKFQLVVIALRSCNLEKV--PHFLLHQK 380

Query:   514 DLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNN 573
             DL +V LS  +++  FP+WLLENNTKL  L L N+S    F+LP  +H  L  L+VS N 
Sbjct:   381 DLHHVDLSDNQIHGNFPSWLLENNTKLEVLLLQNNSFTS-FQLPKSAHNLL-FLNVSVNK 438

Query:   574 FQGHIPLE-IGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLA 632
             F  H+ L+  G IL  L   N++ N   G++PSS  NM  ++FLDLS+N+  G++P    
Sbjct:   439 FN-HLFLQNFGWILPHLVCVNLAYNGFQGNLPSSLDNMKSIEFLDLSHNRFHGKLPRRFL 497

Query:   633 MGCVXXXXXXXXXXXXEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLS 692
              GC              G +F    N T L  + ++ N F G I +      SL  L +S
Sbjct:   498 KGCYNLTILKLSHNKLSGEVFPEAANFTRLWVMSMDNNLFTGNIGKGFRSLPSLNVLDIS 557

Query:   693 NNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCY 752
             NN L+G IP W+G    L  + +  N +EG IP     +  LQ+LD+S N +SG +P   
Sbjct:   558 NNKLTGVIPSWIGERQGLFALQLSNNMLEGEIPTSLFNISYLQLLDLSSNRLSGDIPPHV 617

Query:   753 DFVCIEQVHL-SKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLIL 811
               +    V L   N L G + +    N   +++LDL  N L+GN+P+ ++    +S L+L
Sbjct:   618 SSIYHGAVLLLQNNNLSGVIPDTLLLN---VIVLDLRNNRLSGNLPEFIN-TQNISILLL 673

Query:   812 AHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGHIPSCFDNTT--LHE-----RYNN----G 860
               NN  G++P                   +G IPSC  NT+  L +     RY+     G
Sbjct:   674 RGNNFTGQIPHQFCSLSNIQLLDLSNNKFNGSIPSCLSNTSFGLRKGDDSYRYDVPSRFG 733

Query:   861 SSLQP--FETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLI 918
             ++  P  FE S +++   ++  +       +F TK     Y G    LL G+DLS N L 
Sbjct:   734 TAKDPVYFE-SLLMIDEFNMVNETNSQTKIEFATKHRYDAYMGGNLKLLFGMDLSENELS 792

Query:   919 GHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNT 978
             G IP ++G L +++ LNLSHNNL+G I  +FS L+N+ESLDLS+N+L   IP QL ++ +
Sbjct:   793 GEIPVELGGLVELEALNLSHNNLSGVILESFSGLKNVESLDLSFNRLQGPIPLQLTDMIS 852

Query:   979 LAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICISPTTMPEASPSNEGD 1038
             LAVF+V+YNNLSG +P+   QF TF   SY GNP LCG  + I  +           E D
Sbjct:   853 LAVFNVSYNNLSGIVPQ-GRQFNTFETQSYFGNPLLCGKSIDISCASNNFHPTDNGVEAD 911

Query:  1039 NNLIDMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEMWTTSCYYFVIDNLIPT 1098
              + +DM+ F+ +F  +YV ++ GI+A L  ++ W R WFY+V+ +       +  N   T
Sbjct:   912 ESTVDMESFYWSFVAAYVTILLGILASLSFDSPWSRAWFYIVDAFVLKVRNMLWQNTAGT 971

Query:  1099 R 1099
             +
Sbjct:   972 K 972

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 948 (338.8 bits), Expect = 1.3e-113, Sum P(2) = 1.3e-113
 Identities = 245/672 (36%), Positives = 349/672 (51%)

Query:   382 GLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVXXXXXXXXXXXXPLIHLTSI-ED 440
             G+C L+ L+EL ++ N L  SLP+CL N+T LR LD+             +  L S+ E 
Sbjct:   353 GICRLMKLRELDLSSNALT-SLPYCLGNLTHLRTLDLSNNQLNGNLSSF-VSGLPSVLEY 410

Query:   441 LILSDNHFQIPISLEPLFNHSRLKIFDXXXXXXXXXXXXSHSLTTPNFQLQSLLLSSGYR 500
             L L DN+F        L N +RL +F               S   P FQL+ L LS+   
Sbjct:   411 LSLLDNNFDGSFLFNSLVNQTRLTVFKLSSKVGVIQVQTESSWA-PLFQLKMLYLSNCSL 469

Query:   501 DGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHS 560
              G T   FL +Q DL +V LSH K+   FP WL++NNT+L+ + L  +SL    +LPI  
Sbjct:   470 -GSTMLGFLVHQRDLCFVDLSHNKLTGTFPTWLVKNNTRLQTILLSGNSLT-KLQLPILV 527

Query:   561 HKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSN 620
             H  L++LD+S N     I  +IG +   L   N S N   G+IPSS G M  LQ LD+S+
Sbjct:   528 HG-LQVLDISSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQGTIPSSIGEMKSLQVLDMSS 586

Query:   621 NQLTGEIPEHLAMGCVXXXXXXXXXXXXEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSL 680
             N L G++P     GC             +G +FS++ NLT L+ L L+GN+F G + + L
Sbjct:   587 NGLYGQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKHANLTGLVGLFLDGNNFTGSLEEGL 646

Query:   681 SKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDIS 740
              K  +L  L +S+N  SG +P W+G ++ L ++ M  N ++GP P    Q   ++++DIS
Sbjct:   647 LKSKNLTLLDISDNRFSGMLPLWIGRISRLSYLYMSGNQLKGPFPF-LRQSPWVEVMDIS 705

Query:   741 DNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV 800
              N+ SGS+P   +F  + ++ L  N   G L  G  F    L +LDL  N+ +G I + +
Sbjct:   706 HNSFSGSIPRNVNFPSLRELRLQNNEFTG-LVPGNLFKAAGLEVLDLRNNNFSGKILNTI 764

Query:   801 DGLSQLSYLILAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGHIPSCFDNTTLHERYNNG 860
             D  S+L  L+L +N+ +  +P                    G IPSCF   +     N+ 
Sbjct:   765 DQTSKLRILLLRNNSFQTYIPGKICQLSEVGLLDLSHNQFRGPIPSCFSKMSFGAEQNDR 824

Query:   861 --SSLQPFETSFVIM------GG-MDVD--------PKKQILESFDFTTKSITYTYQGRV 903
               S +  F+ S++        G  +++D        PK   +   DF TKS    YQG +
Sbjct:   825 TMSLVADFDFSYITFLPHCQYGSHLNLDDGVRNGYQPKPATV--VDFLTKSRYEAYQGDI 882

Query:   904 PSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYN 963
                + GLDLS N L G IP +IG+L  I++LNLS N L G IP + S L+ +ESLDLS N
Sbjct:   883 LRYMHGLDLSSNELSGEIPIEIGDLQNIRSLNLSSNRLTGSIPDSISKLKGLESLDLSNN 942

Query:   964 KLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPL-PIC 1022
             KL   IP  L +LN+L   +++YNNLSG+IP +     TF+E SY GN  LCG P    C
Sbjct:   943 KLDGSIPPALADLNSLGYLNISYNNLSGEIPFKG-HLVTFDERSYIGNAHLCGLPTNKNC 1001

Query:  1023 ISPTTMPEASPS 1034
             IS   +PE  PS
Sbjct:  1002 ISQR-VPEP-PS 1011

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 785 (281.4 bits), Expect = 2.1e-109, Sum P(2) = 2.1e-109
 Identities = 201/584 (34%), Positives = 298/584 (51%)

Query:   506 PKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLR 565
             P FL  Q +L  V LS  +++   P WLLENN +L  L L N+S    F++P   H  L+
Sbjct:   335 PNFLMYQKNLHVVDLSGNRISGIIPTWLLENNPELEVLQLKNNSFT-IFQMPTSVHN-LQ 392

Query:   566 LLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTG 625
             +LD S+NN  G  P   G +L  L   N S N   G+ PSS G M  + FLDLS N L+G
Sbjct:   393 VLDFSENNIGGLFPDNFGRVLPNLVHMNGSNNGFQGNFPSSMGEMYNISFLDLSYNNLSG 452

Query:   626 EIPEHLAMGCVXXXXXXXXXXXXEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSS 685
             E+P+     C              GH   R  N T+LI L++  N F G+I   L     
Sbjct:   453 ELPQSFVSSCFSLSILQLSHNKFSGHFLPRQTNFTSLIVLRINNNLFTGKIGVGLLTLVD 512

Query:   686 LQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNIS 745
             L  L +SNN L G++P  L     L  + +  N + G +P     + +  +L + +NN +
Sbjct:   513 LCILDMSNNFLEGELPPLLLVFEYLNFLDLSGNLLSGALP---SHVSLDNVLFLHNNNFT 569

Query:   746 GSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQ 805
             G +P  +    I+ + L  N L G + +  F +   +  L L  N L G IP  +   S+
Sbjct:   570 GPIPDTF-LGSIQILDLRNNKLSGNIPQ--FVDTQDISFLLLRGNSLTGYIPSTLCEFSK 626

Query:   806 LSYLILAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGHIPSCFDNTTLHERYNNGSSLQP 865
             +  L L+ N L G +P                   + ++    ++  L   Y +   ++ 
Sbjct:   627 MRLLDLSDNKLNGFIP--SCFNNLSFGLARKEEITNYYVAVALESFYLGF-YKSTFVVEN 683

Query:   866 FETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQI 925
             F   +      ++D K    + +D    +  ++ +G + S+  GLDLS N L G IP ++
Sbjct:   684 FRLDY--SNYFEIDVKFATKQRYDSYIGAFQFS-EGTLNSMY-GLDLSSNELSGVIPAEL 739

Query:   926 GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA 985
             G+L K++ LNLSHN L+  IP +FS L++IESLDLSYN L   IP+QL  L +LA+F+V+
Sbjct:   740 GDLFKLRALNLSHNFLSSHIPDSFSKLQDIESLDLSYNMLQGSIPHQLTNLTSLAIFNVS 799

Query:   986 YNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPI-CISPTTMPE-ASPSNEGDNNL-I 1042
             YNNLSG IP+   QF TF+E+SY GNP LCGPP    C +     E A+   E D  + I
Sbjct:   800 YNNLSGIIPQ-GKQFNTFDENSYLGNPLLCGPPTDTSCETKKNSEENANGGEEDDKEVAI 858

Query:  1043 DMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEMWTTS 1086
             DM +F+ +   +YV  + GI+ ++ V+  WRR W  LV+ +  S
Sbjct:   859 DMLVFYWSTAGTYVTALIGILVLMCVDCSWRRAWLRLVDAFIAS 902

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 740 (265.6 bits), Expect = 1.5e-102, Sum P(2) = 1.5e-102
 Identities = 197/634 (31%), Positives = 297/634 (46%)

Query:   378 TLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVXXXXXXXXXXXXPLIHLTS 437
             ++  G+C L ++QEL ++ N L G LP CL ++T LR+LD+             L  L S
Sbjct:   235 SIQSGICELNNMQELDLSQNKLVGHLPSCLTSLTGLRVLDLSSNKLTGTVPSS-LGSLQS 293

Query:   438 IEDLILSDNHFQIPISLEPLFNHSRLKIFDXXXXXXXXXXXXSHSLTTPNFQLQSLLLSS 497
             +E L L DN F+   S   L N S L +              S S   P FQL  + L S
Sbjct:   294 LEYLSLFDNDFEGSFSFGSLANLSNLMVLKLCSKSSSLQVL-SESSWKPKFQLSVIALRS 352

Query:   498 GYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLP 557
                + +  P FL +Q DL +V LS   ++ + P+WLL NNTKL+ L L N+ L   F++P
Sbjct:   353 CNMEKV--PHFLLHQKDLRHVDLSDNNISGKLPSWLLANNTKLKVLLLQNN-LFTSFQIP 409

Query:   558 IHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLD 617
               +H  L  LDVS N+F    P  IG I   L   N S N    ++PSS GNMN +Q++D
Sbjct:   410 KSAHNLL-FLDVSANDFNHLFPENIGWIFPHLRYLNTSKNNFQENLPSSLGNMNGIQYMD 468

Query:   618 LSNNQLTGEIPEHLAMGCVXXXXXXXXXXXXEGHMFSRNFNLTNLIWLQLEGNHFVGEIP 677
             LS N   G +P     GC              G +F  + N TN++ L ++ N F G+I 
Sbjct:   469 LSRNSFHGNLPRSFVNGCYSMAILKLSHNKLSGEIFPESTNFTNILGLFMDNNLFTGKIG 528

Query:   678 QSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQIL 737
             Q L    +L+ L +SNN+L+G IP W+G L  L  +++  N ++G IP+       LQ+L
Sbjct:   529 QGLRSLINLELLDMSNNNLTGVIPSWIGELPSLTALLISDNFLKGDIPMSLFNKSSLQLL 588

Query:   738 DISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIP 797
             D+S N++SG +P  +D      + L  N L G + +    N   + ILDL  N  +G IP
Sbjct:   589 DLSANSLSGVIPPQHDSRNGVVLLLQDNKLSGTIPDTLLAN---VEILDLRNNRFSGKIP 645

Query:   798 DRVDGLSQLSYLILAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGHIPSCFDNTTLHERY 857
             + ++ +  +S L+L  NN  G++P                   +G IPSC  NT+    +
Sbjct:   646 EFIN-IQNISILLLRGNNFTGQIPHQLCGLSNIQLLDLSNNRLNGTIPSCLSNTS----F 700

Query:   858 NNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITY-----TYQGRVPSLLSGLDL 912
               G     ++  F I    DV     + + F        Y     T         +    
Sbjct:   701 GFGKECTSYDYDFGISFPSDVFNGFSLHQDFSSNKNGGIYFKSLLTLDPLSMDYKAATQT 760

Query:   913 SCNRLIGHIPPQI--GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIP 970
                    H       GNL  +  ++LS N L+G IP  F  L  + +L+LS+N LS  IP
Sbjct:   761 KIEFATKHRYDAYMGGNLKLLFGMDLSENELSGEIPVEFGGLLELRALNLSHNNLSGVIP 820

Query:   971 YQLVELNTLAVFSVAYNNLSGKIPERAAQFATFN 1004
               +  +  +  F +++N L G+IP +  +  + +
Sbjct:   821 KSISSMEKMESFDLSFNRLQGRIPSQLTELTSLS 854

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 996 (355.7 bits), Expect = 2.1e-100, P = 2.1e-100
 Identities = 276/855 (32%), Positives = 422/855 (49%)

Query:   251 FDSLSNLEELDMSYNEIDN-FEVPQACSGLRKLSYLHLLRVGIRD-GSKLLQSMGSFPSL 308
             F     L+ L++S       F+  +   GL  L  L  L +G+    + +L  +    SL
Sbjct:    46 FYPFEELQSLNLSSGYFKGWFDERKGGKGLGSLRNLETLDLGVNFYDTSVLPYLNEAVSL 105

Query:   309 NTLDLSYNNFXXXXXXXXQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYXXXX 368
              TL L  N F         GFP  + +    ++   +  N    Q+  + + +++     
Sbjct:   106 KTLILHDNLFKG-------GFPVQELINLTSLEVLDLKFNKFSGQLPTQELTNLRNLRAL 158

Query:   369 XXXXXXXXRTLD-QGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVXXXXXXXXX 427
                      +L  QG+C L  LQEL ++ N   G +P C +  + LR+LD+         
Sbjct:   159 DLSNNKFSGSLQKQGICRLEQLQELRLSRNRFEGEIPLCFSRFSKLRVLDLSSNHLSGKI 218

Query:   428 XXXPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDXXXXXXXXXXXXSHSLTTPN 487
                 +    S+E L L DN F+   SL  +   + LK+F             ++      
Sbjct:   219 PYF-ISDFKSMEYLSLLDNDFEGLFSLGLITELTELKVFKLSSRSGMLQIVETNVSGGLQ 277

Query:   488 FQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVN 547
              QL S++LS      I  P FL+ Q +L  + LS+  ++  FP WLLENNT+L+ L L N
Sbjct:   278 SQLSSIMLSHCNLGKI--PGFLWYQQELRVIDLSNNILSGVFPTWLLENNTELQALLLQN 335

Query:   548 DSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSF 607
             +S      LP  + ++L++LD+S NNF   +P ++G IL+ L   N+S N   G++PSS 
Sbjct:   336 NSFK-TLTLP-RTMRRLQILDLSVNNFNNQLPKDVGLILASLRHLNLSNNEFLGNMPSSM 393

Query:   608 GNMNFLQFLDLSNNQLTGEIPEHLAMGCVXXXXXXXXXXXXEGHMFSRNFNLTNLIWLQL 667
               M  ++F+DLS N  +G++P +L  GC              G +  ++ + T+LI L +
Sbjct:   394 ARMENIEFMDLSYNNFSGKLPRNLFTGCYSLSWLKLSHNRFSGPIIRKSSDETSLITLIM 453

Query:   668 EGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGN--LTVLRHIIMPKNHIEGPIP 725
             + N F G+IP++L     L  + LSNN L+G IPRWLGN  L VLR   +  N ++G IP
Sbjct:   454 DNNMFTGKIPRTLLNLRMLSVIDLSNNLLTGTIPRWLGNFFLEVLR---ISNNRLQGAIP 510

Query:   726 LEFCQLRILQILDISDNNISGSLP--SCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLM 783
                  +  L +LD+S N +SGSLP  S  D+  I  +H   N L G + +  ++    L 
Sbjct:   511 PSLFNIPYLWLLDLSGNFLSGSLPLRSSSDYGYILDLH--NNNLTGSIPDTLWYG---LR 565

Query:   784 ILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGH 843
             +LDL  N L+GNIP        +S ++L  NNL G++P+                  +  
Sbjct:   566 LLDLRNNKLSGNIP-LFRSTPSISVVLLRENNLTGKIPVELCGLSNVRMLDFAHNRLNES 624

Query:   844 IPSCFDNTTL----HERYNNG---SSL---------QPFETSFVIMGGMDVDPKKQILES 887
             IPSC  N +     H   ++    +SL         + +  S ++     +D        
Sbjct:   625 IPSCVTNLSFGSGGHSNADSDWYPASLLSNFMEIYTEVYYESLIVSDRFSLDYSVDFNVQ 684

Query:   888 FDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPS 947
              +F  K     Y     + + GLDLS N L G+IP ++G+L ++++LNLS N+L+G IP 
Sbjct:   685 VEFAVKQRYDLYMRGTLNQMFGLDLSSNELSGNIPEELGDLKRVRSLNLSRNSLSGSIPG 744

Query:   948 TFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESS 1007
             +FSNLR+IESLDLS+NKL   IP QL  L +L VF+V+YNNLSG IP+   QF TF E S
Sbjct:   745 SFSNLRSIESLDLSFNKLHGTIPSQLTLLQSLVVFNVSYNNLSGVIPQ-GKQFNTFGEKS 803

Query:  1008 YEGNPFLCGPPLPICISPTTMPEASPSNEGDNN-LIDMDIFFITFTTSYVIVIFGIVAVL 1066
             Y GN  LCG P       TT+       + D + L+D+ + + +  T+YV V+ G +  L
Sbjct:   804 YLGNFLLCGSPTKRSCGGTTISSGKEYEDDDESGLLDIVVLWWSLGTTYVTVMMGFLVFL 863

Query:  1067 YVNARWRRRWFYLVE 1081
               ++ WRR WF LV+
Sbjct:   864 CFDSPWRRAWFCLVD 878

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 960 (343.0 bits), Expect = 1.4e-96, P = 1.4e-96
 Identities = 286/875 (32%), Positives = 414/875 (47%)

Query:   240 NRLEGSID-VKEFDSLS---NLEELDMSYNEIDNFEVP--QACSGLRKLSYLHLLRVGIR 293
             N   G  D V+ ++SL    NLE LD+S N  +N   P   A + L  L ++    +G  
Sbjct:   119 NEFNGLFDDVEGYESLRRLRNLEILDLSSNSFNNSIFPFLNAATSLTTL-FIQSNYIG-- 175

Query:   294 DGSKLLQSMGSFPSLNTLDLSYNNFXXXXXXXXQGFPHFKSLKELYMDDARIALNTSFLQ 353
              G   ++ + +   L  LDLS + +          F H + LK L +     A + S L 
Sbjct:   176 -GPLPIKELKNLTKLELLDLSRSGYNGSIPE----FTHLEKLKALDLS----ANDFSSLV 226

Query:   354 IIGESMPSIQYXXXXXXXXXXXXRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSL 413
              + E                       +  C + +L++L +  N   G LP CL N+  L
Sbjct:   227 ELQELKVLTNLEVLGLAWNHLDGPIPKEVFCEMKNLRQLDLRGNYFEGQLPVCLGNLNKL 286

Query:   414 RILDVXXXXXXXXXXXXPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDXXXXXX 473
             R+LD+                L S+E L LSDN+F+   SL PL N ++LK+F       
Sbjct:   287 RVLDLSSNQLSGNLPAS-FNSLESLEYLSLSDNNFEGFFSLNPLANLTKLKVF-RLSSTS 344

Query:   474 XXXXXXSHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWL 533
                   + S   P FQL    L       I  P FL  Q +L  V LS  +++ + P WL
Sbjct:   345 EMLQVETESNWLPKFQLTVAALPFCSLGKI--PNFLVYQTNLRLVDLSSNRLSGDIPTWL 402

Query:   534 LENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFN 593
             LENN +L+ L L N+S    F++P   HK L++LD S N+  G +P  IG +L RL   N
Sbjct:   403 LENNPELKVLQLKNNSFT-IFQIPTIVHK-LQVLDFSANDITGVLPDNIGHVLPRLLHMN 460

Query:   594 ISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVXXXXXXXXXXXXEGHMF 653
              S N   G++PSS G MN + FLDLS N  +GE+P  L  GC              G + 
Sbjct:   461 GSHNGFQGNLPSSMGEMNDISFLDLSYNNFSGELPRSLLTGCFSLITLQLSHNSFSGPIL 520

Query:   654 SRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLG-NLTVLRH 712
                  LT+LI L++  N F GEI   L    +L     SNN L+G I   +  + + L  
Sbjct:   521 PIQTRLTSLIVLRMHNNLFTGEIGVGLRTLVNLSIFDASNNRLTGLISSSIPPDSSHLIM 580

Query:   713 IIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCY-DFVCIEQVHLSKNMLHGQL 771
             +++  N +EG +P     +  L  LD+S N +SG LPS   + +   ++ L  N   G L
Sbjct:   581 LLLSNNLLEGTLPPSLLAIHHLNFLDLSGNLLSGDLPSSVVNSMYGIKIFLHNNSFTGPL 640

Query:   772 KEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIXXXXXXXXX 831
                   N     ILDL  N L+G+IP  V+   ++  L+L  NNL G +P          
Sbjct:   641 PVTLLENAY---ILDLRNNKLSGSIPQFVN-TGKMITLLLRGNNLTGSIPRKLCDLTSIR 696

Query:   832 XXXXXXXXXHGHIPSCFDN--TTLHE---------RYNNGSSLQP--FETSFVIMGGMDV 878
                      +G IP C ++  T L E           + G SLQ   + ++F++   M  
Sbjct:   697 LLDLSDNKLNGVIPPCLNHLSTELGEGIGLSGFSQEISFGDSLQMEFYRSTFLVDEFMLY 756

Query:   879 DPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSH 938
                  ++   +F  K    ++ G     + GLDLS N L G IP ++G+L+K++ LNLS 
Sbjct:   757 YDSTYMIVEIEFAAKQRYDSFSGGTLDYMYGLDLSSNELSGVIPAELGDLSKLRALNLSR 816

Query:   939 NNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAA 998
             N L+  IP+ FS L++IESLDLSYN L   IP+QL  L +LAVF+V++NNLSG IP+   
Sbjct:   817 NLLSSSIPANFSKLKDIESLDLSYNMLQGNIPHQLTNLTSLAVFNVSFNNLSGIIPQ-GG 875

Query:   999 QFATFNESSYEGNPFLCGPPLP-ICISPTTMPEASPSNE------GDNNLIDMDIFFITF 1051
             QF TFN++SY GNP LCG P    C       EA    E       D   IDM + + T 
Sbjct:   876 QFNTFNDNSYLGNPLLCGTPTDRSCEGKKNTKEADNGGEEEEEDDDDEAAIDMVVLYWTT 935

Query:  1052 TTSYVIVIFGIVAVLYVNARWRRRWFYLVEMWTTS 1086
              ++Y I + GI+ ++  +  WRR W  +V+ +  S
Sbjct:   936 GSTYAIALIGILVLMCFDCPWRRTWLCIVDAFIAS 970

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 877 (313.8 bits), Expect = 8.6e-88, P = 8.6e-88
 Identities = 272/863 (31%), Positives = 383/863 (44%)

Query:   251 FDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNT 310
             F+ + +L      YNE + F       G R LS L  L+  I D S    +  +FP LN 
Sbjct:    91 FEEVRSLNLSTEGYNEFNGFF--DDVEGYRSLSGLRNLK--IMDLSTNYFNYSTFPFLNA 146

Query:   311 LDLSYNNFXXXXXXXXQGFP--HFKSLKELYMDDARI-ALNTSFLQIIGESMPSIQYXXX 367
                S              FP    K L  L + D R   LN S  ++I   +  ++    
Sbjct:   147 AT-SLTTLILTYNEMDGPFPIKGLKDLTNLELLDLRANKLNGSMQELI--HLKKLKALDL 203

Query:   368 XXXXXXXXXRTLDQGLCPLVHLQELHMADNDLRGSLPW-CLANMTSLRILDVXXXXXXXX 426
                          Q L  L++L+ L +A N + G +P      + +LR LD+        
Sbjct:   204 SSNKFSSSMEL--QELQNLINLEVLGLAQNHVDGPIPIEVFCKLKNLRDLDLKGNHFVGQ 261

Query:   427 XXXXPLIHLTSIEDLILSDNHFQ--IPISLEPLFNHSRLKIFDXXXXXXXXXXXXSHSLT 484
                  L  L  +  L LS N     +P S   L +   L + D            ++ LT
Sbjct:   262 IPLC-LGSLKKLRVLDLSSNQLSGDLPSSFSSLESLEYLSLSDNNFDGSFSLNPLTN-LT 319

Query:   485 TPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLS 544
                F +     S         P FL  Q  L  V LS   ++   P WLL NN +L  L 
Sbjct:   320 NLKFVVVLRFCSLE-----KIPSFLLYQKKLRLVDLSSNNLSGNIPTWLLTNNPELEVLQ 374

Query:   545 LVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIP 604
             L N+S    F +P   H  L++ D S NN  G  P ++   L  L   N S N   G  P
Sbjct:   375 LQNNSFT-IFPIPTMVHN-LQIFDFSANNI-GKFPDKMDHALPNLVRLNGSNNGFQGYFP 431

Query:   605 SSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVXXXXXXXXXXXXEGHMFSRNFNLTNLIW 664
             +S G M  + FLDLS N  +G++P     GCV             G    R  N  +L  
Sbjct:   432 TSIGEMKNISFLDLSYNNFSGKLPRSFVTGCVSIMFLKLSHNKFSGRFLPRETNFPSLDV 491

Query:   665 LQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPI 724
             L+++ N F G I   LS  + L+ L +SNN LSG IPRWL     L ++++  N +EG I
Sbjct:   492 LRMDNNLFTGNIGGGLSNSTMLRILDMSNNGLSGAIPRWLFEFPYLDYVLISNNFLEGTI 551

Query:   725 PLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMI 784
             P     +  L  LD+S N  SG+LPS  D      + L  N   G + + T     ++ I
Sbjct:   552 PPSLLGMPFLSFLDLSGNQFSGALPSHVDSELGIYMFLHNNNFTGPIPD-TLLK--SVQI 608

Query:   785 LDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGHI 844
             LDL  N L+G+IP + D    ++ L+L  NNL G +P                   +G I
Sbjct:   609 LDLRNNKLSGSIP-QFDDTQSINILLLKGNNLTGSIPRELCDLSNVRLLDLSDNKLNGVI 667

Query:   845 PSCFDNTTLHERYNNGSSLQ--P--FETSF--------VIMGGMDVDPKKQILESFDFTT 892
             PSC  N +      +  +L   P   +TS          ++  ++VD          F  
Sbjct:   668 PSCLSNLSFGRLQEDAMALNIPPSFLQTSLEMELYKSTFLVDKIEVDRSTYQETEIKFAA 727

Query:   893 KSITYTYQGR------VPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIP 946
             K    +Y GR      +  L+ G+DLS N L G IP ++G+L K++TLNLSHN+L G IP
Sbjct:   728 KQRYDSYSGRSEFSEGILRLMYGMDLSNNELSGVIPTELGDLLKLRTLNLSHNSLLGSIP 787

Query:   947 STFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNES 1006
             S+FS L ++ESLDLS+N L   IP  L  L +LAVF V+ NNLSG IP+   QF TF E 
Sbjct:   788 SSFSKLIDVESLDLSHNMLQGSIPQLLSSLTSLAVFDVSSNNLSGIIPQ-GRQFNTFEEE 846

Query:  1007 SYEGNPFLCGPPLPICISPTTMPEASPSN---EGDNNLIDMDIFFITFTTSYVIVIFGIV 1063
             SY GNP LCGPP          PE + +    E D   IDM +F+ +  + YV  + G++
Sbjct:   847 SYLGNPLLCGPPTSRSCETNKSPEEADNGQEEEDDKAAIDMMVFYFSTASIYVTALIGVL 906

Query:  1064 AVLYVNARWRRRWFYLVEMWTTS 1086
              ++  +  WRR W  +V+ +  S
Sbjct:   907 VLMCFDCPWRRAWLRIVDAFIAS 929

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 608 (219.1 bits), Expect = 4.8e-56, P = 4.8e-56
 Identities = 188/647 (29%), Positives = 283/647 (43%)

Query:   397 NDLRGSLPWCLANMTSLRILDVXXXXXXXXXXXXPLIHLTSIEDLILSDNHF--QIPISL 454
             N+L G +P CL ++  L++  V             +  L ++ DL LS N    +IP   
Sbjct:   178 NNLTGKIPECLGDLVHLQMF-VAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDF 236

Query:   455 EPLFNHSRLKIFDXXXXXXXXXXXXSHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHD 514
               L N   L + +            + S       L  L L      G   P  L N   
Sbjct:   237 GNLLNLQSLVLTENLLEGDIPAEIGNCS------SLVQLELYDNQLTG-KIPAELGNLVQ 289

Query:   515 LEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNF 574
             L+ +R+   K+    P+ L    T+L  L L  + LVGP    I   + L +L +  NNF
Sbjct:   290 LQALRIYKNKLTSSIPSSLFRL-TQLTHLGLSENHLVGPISEEIGFLESLEVLTLHSNNF 348

Query:   575 QGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMG 634
              G  P  I + L  LTV  +  N + G +P+  G +  L+ L   +N LTG IP  ++  
Sbjct:   349 TGEFPQSITN-LRNLTVLTVGFNNISGELPADLGLLTNLRNLSAHDNLLTGPIPSSIS-N 406

Query:   635 CVXXXXXXXXXXXXEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNN 694
             C              G +  R F   NL ++ +  NHF GEIP  +  CS+L+ L +++N
Sbjct:   407 CTGLKLLDLSHNQMTGEI-PRGFGRMNLTFISIGRNHFTGEIPDDIFNCSNLETLSVADN 465

Query:   695 SLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLP-SCYD 753
             +L+G +   +G L  LR + +  N + GPIP E   L+ L IL +  N  +G +P    +
Sbjct:   466 NLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSN 525

Query:   754 FVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAH 813
                ++ + +  N L G + E   F+   L +LDLS N  +G IP     L  L+YL L  
Sbjct:   526 LTLLQGLRMYSNDLEGPIPE-EMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQG 584

Query:   814 NNLEGEVPIXXXXXXXXXXXXXXXXXXHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIM 873
             N   G +P                    G IP       L     N      F  + ++ 
Sbjct:   585 NKFNGSIPASLKSLSLLNTFDISDNLLTGTIPG-----ELLASLKNMQLYLNFSNN-LLT 638

Query:   874 GGMDVD-PKKQILESFDFTTKSITYTYQGRVPSLLSG------LDLSCNRLIGHIPPQI- 925
             G +  +  K ++++  D +       + G +P  L        LD S N L GHIP ++ 
Sbjct:   639 GTIPKELGKLEMVQEIDLSNN----LFSGSIPRSLQACKNVFTLDFSQNNLSGHIPDEVF 694

Query:   926 GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA 985
               +  I +LNLS N+ +G IP +F N+ ++ SLDLS N L+ +IP  L  L+TL    +A
Sbjct:   695 QGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLA 754

Query:   986 YNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICISPTTMPEAS 1032
              NNL G +PE    F   N S   GN  LCG   P+   P T+ + S
Sbjct:   755 SNNLKGHVPESGV-FKNINASDLMGNTDLCGSKKPL--KPCTIKQKS 798

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 519 (187.8 bits), Expect = 3.5e-46, P = 3.5e-46
 Identities = 182/643 (28%), Positives = 279/643 (43%)

Query:   386 LVHLQELHMADNDLRGSLPWCLANMTSLRILDVXXXXXXXXXXXXPLIHLTSIEDLILSD 445
             LV+++ L + DN+L G +P  L N+ +L++L +             L  L  ++ LIL D
Sbjct:   142 LVNIRSLRIGDNELVGDIPETLGNLVNLQMLALASCRLTGPIPSQ-LGRLVRVQSLILQD 200

Query:   446 NHFQIPISLEPLFNHSRLKIFDXXXXXXXXXXXXSHSLTTPNFQLQSLLLSSGYRDGITF 505
             N+ + PI  E L N S L +F                       L+ L L++    G   
Sbjct:   201 NYLEGPIPAE-LGNCSDLTVFTAAENMLNGTIPAELGRLE---NLEILNLANNSLTG-EI 255

Query:   506 PKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLR 565
             P  L     L+Y+ L   ++    P  L +    L+ L L  ++L G       +  QL 
Sbjct:   256 PSQLGEMSQLQYLSLMANQLQGLIPKSLADLGN-LQTLDLSANNLTGEIPEEFWNMSQLL 314

Query:   566 LLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTG 625
              L ++ N+  G +P  I    + L    +S   L G IP        L+ LDLSNN L G
Sbjct:   315 DLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAG 374

Query:   626 EIPEHLAMGCVXXXXXXXXXXXXEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSS 685
              IPE L    V            EG +     NLTNL WL L  N+  G++P+ +S    
Sbjct:   375 SIPEAL-FELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKEISALRK 433

Query:   686 LQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNIS 745
             L+ LFL  N  SG+IP+ +GN T L+ I M  NH EG IP    +L+ L +L +  N + 
Sbjct:   434 LEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELV 493

Query:   746 GSLPS----CYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVD 801
             G LP+    C+    ++   L+ N L G +     F    L  L L  N L GN+PD + 
Sbjct:   494 GGLPASLGNCHQLNILD---LADNQLSGSIPSSFGF-LKGLEQLMLYNNSLQGNLPDSLI 549

Query:   802 GLSQLSYLILAHNNLEGEV-PIXXXXXXXXXXXXXXXXXXHGHIPSCFDNTTLHERYNNG 860
              L  L+ + L+HN L G + P+                     IP    N+   +R   G
Sbjct:   550 SLRNLTRINLSHNRLNGTIHPLCGSSSYLSFDVTNNGF--EDEIPLELGNSQNLDRLRLG 607

Query:   861 SSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTY--QGRVPSLLSGLDLSCNRLI 918
              +    +  + +  G     K + L   D ++ ++T T   Q  +   L+ +DL+ N L 
Sbjct:   608 KNQLTGKIPWTL--G-----KIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLS 660

Query:   919 GHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNT 978
             G IPP +G L+++  L LS N     +P+   N   +  L L  N L+  IP ++  L  
Sbjct:   661 GPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGA 720

Query:   979 LAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPI 1021
             L V ++  N  SG +P+   + +   E     N  L G  +P+
Sbjct:   721 LNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNS-LTGE-IPV 761

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 563 (203.2 bits), Expect = 5.4e-51, P = 5.4e-51
 Identities = 215/806 (26%), Positives = 344/806 (42%)

Query:   242 LEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRK-LSYLHLLRVGIRDGSKLLQ 300
             L GSI        +NL  +D+S N +    +P   S L   L  LHL    +  G  +  
Sbjct:    83 LTGSIS-PSIGRFNNLIHIDLSSNRLVG-PIPTTLSNLSSSLESLHLFS-NLLSGD-IPS 138

Query:   301 SMGSFPSLNTLDLSYNNFXXXXXXXXQGFPHFKSLKELYMDDARIA------------LN 348
              +GS  +L +L L  N          + F +  +L+ L +   R+             L 
Sbjct:   139 QLGSLVNLKSLKLGDNELNGTIP---ETFGNLVNLQMLALASCRLTGLIPSRFGRLVQLQ 195

Query:   349 TSFLQ---IIGESMPSIQYXXXXXXXXXXXXR---TLDQGLCPLVHLQELHMADNDLRGS 402
             T  LQ   + G     I              R   +L   L  L +LQ L++ DN   G 
Sbjct:   196 TLILQDNELEGPIPAEIGNCTSLALFAAAFNRLNGSLPAELNRLKNLQTLNLGDNSFSGE 255

Query:   403 LPWCLANMTSLRILDVXXXXXXXXXXXXPLIHLTSIEDLILSDNHFQIPISLEPLFNHSR 462
             +P  L ++ S++ L++             L  L +++ L LS N+    I  E  +  ++
Sbjct:   256 IPSQLGDLVSIQYLNLIGNQLQGLIPKR-LTELANLQTLDLSSNNLTGVIH-EEFWRMNQ 313

Query:   463 LKIFDXXXXXXXXXXXXSHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSH 522
             L+                 ++ + N  L+ L LS     G   P  + N   L+ + LS+
Sbjct:   314 LEFL--VLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSG-EIPAEISNCQSLKLLDLSN 370

Query:   523 IKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEI 582
               +  + P+ L +   +L  L L N+SL G     I +   L+   +  NN +G +P EI
Sbjct:   371 NTLTGQIPDSLFQL-VELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVPKEI 429

Query:   583 GDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVXXXXXX 642
             G  L +L +  +  N   G +P   GN   LQ +D   N+L+GEIP  +           
Sbjct:   430 G-FLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGR-LKDLTRLH 487

Query:   643 XXXXXXEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPR 702
                    G++ +   N   +  + L  N   G IP S    ++L+   + NNSL G +P 
Sbjct:   488 LRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGNLPD 547

Query:   703 WLGNLTVLRHIIMPKNHIEGPI-PLEFCQLRILQILDISDNNISGSLP-SCYDFVCIEQV 760
              L NL  L  I    N   G I PL  C        D+++N   G +P        ++++
Sbjct:   548 SLINLKNLTRINFSSNKFNGSISPL--CGSSSYLSFDVTENGFEGDIPLELGKSTNLDRL 605

Query:   761 HLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEV 820
              L KN   G++   TF     L +LD+S N L+G IP  +    +L+++ L +N L G +
Sbjct:   606 RLGKNQFTGRIPR-TFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVI 664

Query:   821 PIXXXXXXXXXXXXXXXXXXHGHIPS-CFDNTTLHERYNNGSSLQPFETSFVIMGGMDVD 879
             P                    G +P+  F  T +   + +G+SL       +  G +   
Sbjct:   665 PTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEI--GNL--- 719

Query:   880 PKKQILESFDFTTKSITYTYQGRVPSL--LSGLDLSCNRLIGHIPPQIGNLTKIQT-LNL 936
                Q L + +     ++      +  L  L  L LS N L G IP +IG L  +Q+ L+L
Sbjct:   720 ---QALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDL 776

Query:   937 SHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPER 996
             S+NN  G IPST S L  +ESLDLS+N+L  ++P Q+ ++ +L   +++YNNL GK+ + 
Sbjct:   777 SYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKLKK- 835

Query:   997 AAQFATFNESSYEGNPFLCGPPLPIC 1022
               QF+ +   ++ GN  LCG PL  C
Sbjct:   836 --QFSRWQADAFVGNAGLCGSPLSHC 859

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	1102
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-60
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-50
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-49
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-47
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-44
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-34
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-30
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-16
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-08
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	8e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	2e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	6e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	8e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  223 bits (569), Expect = 4e-60
 Identities = 188/609 (30%), Positives = 275/609 (45%), Gaps = 99/609 (16%)

Query: 413  LRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNE 472
            ++ +++S+NQL G I        +S+  L LS+N+F   I    + N   L+  D  NN 
Sbjct: 95   IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPN---LETLDLSNNM 151

Query: 473  INAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNW 532
            ++ EI                       D  +F         L+ + L    +  + PN 
Sbjct: 152  LSGEI---------------------PNDIGSF-------SSLKVLDLGGNVLVGKIPNS 183

Query: 533  LLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVF 592
            L  N T L  L+L ++ LVG     +   K L+ + +  NN  G IP EIG  L+ L   
Sbjct: 184  L-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG-LTSLNHL 241

Query: 593  NISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHM 652
            ++  N L G IPSS GN+  LQ+L L  N+L+G IP  +      L SL LS+N+L G +
Sbjct: 242  DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI-FSLQKLISLDLSDNSLSGEI 300

Query: 653  FSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLG---NLTV 709
                  L NL  L L  N+F G+IP +L+    LQ L L +N  SG+IP+ LG   NLTV
Sbjct: 301  PELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTV 360

Query: 710  LRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLP-SCYDFVCIEQVHLSKNMLH 768
            L    +  N++ G IP   C    L  L +  N++ G +P S      + +V L  N   
Sbjct: 361  LD---LSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS 417

Query: 769  GQLKEGTFFNCLTLM-ILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRL 827
            G+L     F  L L+  LD+S N+L G I  R   +  L  L LA N   G +P      
Sbjct: 418  GELPSE--FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP-DSFGS 474

Query: 828  NQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILES 887
             +L+ LDLS N   G +P                                          
Sbjct: 475  KRLENLDLSRNQFSGAVPRKL--------------------------------------- 495

Query: 888  FDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPS 947
                         G +  L+  L LS N+L G IP ++ +  K+ +L+LSHN L+G IP+
Sbjct: 496  -------------GSLSELMQ-LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPA 541

Query: 948  TFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESS 1007
            +FS +  +  LDLS N+LS +IP  L  + +L   ++++N+L G +P   A F   N S+
Sbjct: 542  SFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGA-FLAINASA 600

Query: 1008 YEGNPFLCG 1016
              GN  LCG
Sbjct: 601  VAGNIDLCG 609

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  191 bits (487), Expect = 7e-50
 Identities = 144/437 (32%), Positives = 216/437 (49%), Gaps = 48/437 (10%)

Query: 567 LDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSS-FGNMNFLQFLDLSNNQLTG 625
           +D+S  N  G I   I   L  +   N+S N L G IP   F   + L++L+LSNN  TG
Sbjct: 74  IDLSGKNISGKISSAIFR-LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTG 132

Query: 626 EIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSS 685
            IP         L +L LSNN L G + +   + ++L  L L GN  VG+IP SL+  +S
Sbjct: 133 SIPRGSIPN---LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTS 189

Query: 686 LQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNIS 745
           L+ L L++N L G+IPR LG +  L+ I +  N++ G IP E   L  L  LD+  NN++
Sbjct: 190 LEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT 249

Query: 746 GSLPSCY-DFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLS 804
           G +PS   +   ++ + L +N L G +   + F+   L+ LDLS N L+G IP+ V  L 
Sbjct: 250 GPIPSSLGNLKNLQYLFLYQNKLSGPIPP-SIFSLQKLISLDLSDNSLSGEIPELVIQLQ 308

Query: 805 QLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQ 864
            L  L L  NN  G++P+ L  L +LQ+L L +N   G IP          ++NN     
Sbjct: 309 NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG------KHNN----- 357

Query: 865 PFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLL--SG----LDLSCNRLI 918
                               L   D +T ++T    G +P  L  SG    L L  N L 
Sbjct: 358 --------------------LTVLDLSTNNLT----GEIPEGLCSSGNLFKLILFSNSLE 393

Query: 919 GHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNT 978
           G IP  +G    ++ + L  N+ +G +PS F+ L  +  LD+S N L  +I  +  ++ +
Sbjct: 394 GEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPS 453

Query: 979 LAVFSVAYNNLSGKIPE 995
           L + S+A N   G +P+
Sbjct: 454 LQMLSLARNKFFGGLPD 470

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  190 bits (484), Expect = 2e-49
 Identities = 181/661 (27%), Positives = 280/661 (42%), Gaps = 165/661 (24%)

Query: 310 TLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSN 369
           ++DLS  N +  +++     P+ +++     + +   L+      I  +  S++YL+LSN
Sbjct: 73  SIDLSGKNISGKISSAIFRLPYIQTI-----NLSNNQLSGPIPDDIFTTSSSLRYLNLSN 127

Query: 370 SS-----------------VSNN--SRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANM 410
           ++                 +SNN  S  +   +     L+ L +  N L G +P  L N+
Sbjct: 128 NNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNL 187

Query: 411 TSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHF--QIPISLEPLFNHSRLKIFDA 468
           TSL  L ++SNQL+G I    L  + S++ + L  N+   +IP  +  L   + L   D 
Sbjct: 188 TSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLSGEIPYEIGGL---TSLNHLDL 243

Query: 469 ENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEE 528
             N +   I                            P  L N  +L+Y+ L   K++  
Sbjct: 244 VYNNLTGPI----------------------------PSSLGNLKNLQYLFLYQNKLSGP 275

Query: 529 FPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSR 588
            P  +  +  KL  L L ++SL G     +   + L +L +  NNF G IP+ +   L R
Sbjct: 276 IPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS-LPR 333

Query: 589 LTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNL 648
           L V  +  N   G IP + G  N L  LDLS N LTGEIPE L   C S           
Sbjct: 334 LQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL---CSS----------- 379

Query: 649 EGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLT 708
            G++F           L L  N   GEIP+SL  C SL+ + L +NS SG++P       
Sbjct: 380 -GNLFK----------LILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS------ 422

Query: 709 VLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPS-CYDFVCIEQVHLSKNML 767
                             EF +L ++  LDIS+NN+ G + S  +D   ++ + L++N  
Sbjct: 423 ------------------EFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKF 464

Query: 768 HGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRL 827
            G L +   F    L  LDLS N  +G +P ++  LS+L  L L+ N L GE+P +L   
Sbjct: 465 FGGLPD--SFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSC 522

Query: 828 NQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILES 887
            +L  LDLS+N L G IP+ F                   +   ++  +D          
Sbjct: 523 KKLVSLDLSHNQLSGQIPASF-------------------SEMPVLSQLD---------- 553

Query: 888 FDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPS 947
                                   LS N+L G IP  +GN+  +  +N+SHN+L G +PS
Sbjct: 554 ------------------------LSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589

Query: 948 T 948
           T
Sbjct: 590 T 590

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  183 bits (466), Expect = 3e-47
 Identities = 145/443 (32%), Positives = 209/443 (47%), Gaps = 53/443 (11%)

Query: 587  SRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNN 646
            SR+   ++S   + G I S+   + ++Q ++LSNNQL+G IP+ +     SLR L LSNN
Sbjct: 69   SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN 128

Query: 647  NLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGN 706
            N  G +  R   + NL  L L  N   GEIP  +   SSL+ L L  N L GKIP  L N
Sbjct: 129  NFTGSI-PRGS-IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN 186

Query: 707  LTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNM 766
            LT L  + +  N + G IP E  Q++ L+ + +  NN+SG +P         ++      
Sbjct: 187  LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY--------EI------ 232

Query: 767  LHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCR 826
              G L         +L  LDL YN+L G IP  +  L  L YL L  N L G +P  +  
Sbjct: 233  --GGLT--------SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS 282

Query: 827  LNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFV--IMGGMDVDPKKQI 884
            L +L  LDLS+N+L G IP       L  +  N   L  F  +F   I   +   P+ Q+
Sbjct: 283  LQKLISLDLSDNSLSGEIPE------LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQV 336

Query: 885  LESFDFTTKSITYTYQGRVP------SLLSGLDLSCNRLIGHIPPQI---GNLTKIQTLN 935
            L+ +       +  + G +P      + L+ LDLS N L G IP  +   GNL K   L 
Sbjct: 337  LQLW-------SNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFK---LI 386

Query: 936  LSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPE 995
            L  N+L G IP +    R++  + L  N  S ++P +  +L  +    ++ NNL G+I  
Sbjct: 387  LFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINS 446

Query: 996  RAAQFATFNESSYEGNPFLCGPP 1018
            R     +    S   N F  G P
Sbjct: 447  RKWDMPSLQMLSLARNKFFGGLP 469

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  172 bits (438), Expect = 7e-44
 Identities = 197/724 (27%), Positives = 309/724 (42%), Gaps = 153/724 (21%)

Query: 8   MVVMFVLLLIIFEGGWSEGCLNHERFALL-QLKLFFIDPYNYLLDWVDDEGATDCCQWER 66
           ++ M   L + F        L+ E   LL   K    DP  YL +W     + D C W+ 
Sbjct: 12  LIFMLFFLFLNF------SMLHAEELELLLSFKSSINDPLKYLSNW---NSSADVCLWQG 62

Query: 67  VSCNNTMGRVVVLDLS-QTHRGEYWYLNASLFT-PFQQLESLDLRDNDIAGCVENEGLER 124
           ++CNN+  RVV +DLS +   G+   +++++F  P+  +++++L +N ++G + ++ +  
Sbjct: 63  ITCNNS-SRVVSIDLSGKNISGK---ISSAIFRLPY--IQTINLSNNQLSGPIPDD-IFT 115

Query: 125 LSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLN 184
            S  S+L+ LNL  N F  SI      + +L +LDLS N L G I   ++ S   L+ L+
Sbjct: 116 TS--SSLRYLNLSNNNFTGSI--PRGSIPNLETLDLSNNMLSGEIP-NDIGSFSSLKVLD 170

Query: 185 IGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEG 244
           +G N     +V K P  L+ L +L+   L+ N     I   L ++ SL+ + L  N L G
Sbjct: 171 LGGN----VLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG 226

Query: 245 SIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGS 304
            I   E   L++L  LD+ YN +    +P +   L+ L YL L +  +     +  S+ S
Sbjct: 227 EIP-YEIGGLTSLNHLDLVYNNLTG-PIPSSLGNLKNLQYLFLYQNKLSG--PIPPSIFS 282

Query: 305 FPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQY 364
              L +LDLS N+ +                                   I E +  +Q 
Sbjct: 283 LQKLISLDLSDNSLSGE---------------------------------IPELVIQLQN 309

Query: 365 LSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLI 424
           L + +   +N +  +   L  L  LQ L +  N   G +P  L    +L +LD+S+N L 
Sbjct: 310 LEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLT 369

Query: 425 GSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLT 484
           G I           E L  S N F             +L +F   +N +  EI       
Sbjct: 370 GEIP----------EGLCSSGNLF-------------KLILF---SNSLEGEI------- 396

Query: 485 TPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQ-- 542
                                PK L     L  VRL     + E P+      TKL    
Sbjct: 397 ---------------------PKSLGACRSLRRVRLQDNSFSGELPSEF----TKLPLVY 431

Query: 543 -LSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDG 601
            L + N++L G           L++L +++N F G +P   G    RL   ++S N   G
Sbjct: 432 FLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS--KRLENLDLSRNQFSG 489

Query: 602 SIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTN 661
           ++P   G+++ L  L LS N+L+GEIP+ L+  C  L SL LS+N L G           
Sbjct: 490 AVPRKLGSLSELMQLKLSENKLSGEIPDELS-SCKKLVSLDLSHNQLSGQ---------- 538

Query: 662 LIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIE 721
                         IP S S+   L  L LS N LSG+IP+ LGN+  L  + +  NH+ 
Sbjct: 539 --------------IPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH 584

Query: 722 GPIP 725
           G +P
Sbjct: 585 GSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  143 bits (362), Expect = 1e-34
 Identities = 109/361 (30%), Positives = 170/361 (47%), Gaps = 71/361 (19%)

Query: 638 LRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLS 697
           L S   S N+   ++ + N +    +W  +  N+            S +  + LS  ++S
Sbjct: 34  LLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNS-----------SRVVSIDLSGKNIS 82

Query: 698 GKIPRWLGNLTVLRHIIMPKNHIEGPIPLE-FCQLRILQILDISDNNISGSLPSCYDFVC 756
           GKI   +  L  ++ I +  N + GPIP + F     L+ L++S+NN +GS+P       
Sbjct: 83  GKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIP-N 141

Query: 757 IEQVHLSKNMLHGQLKE--GTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHN 814
           +E + LS NML G++    G+F +   L +LDL  N L G IP+ +  L+ L +L LA N
Sbjct: 142 LETLDLSNNMLSGEIPNDIGSFSS---LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN 198

Query: 815 NLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMG 874
            L G++P +L ++  L+ + L  NNL G I                    P+E     +G
Sbjct: 199 QLVGQIPRELGQMKSLKWIYLGYNNLSGEI--------------------PYE-----IG 233

Query: 875 GMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTL 934
           G+                            + L+ LDL  N L G IP  +GNL  +Q L
Sbjct: 234 GL----------------------------TSLNHLDLVYNNLTGPIPSSLGNLKNLQYL 265

Query: 935 NLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIP 994
            L  N L+GPIP +  +L+ + SLDLS N LS +IP  +++L  L +  +  NN +GKIP
Sbjct: 266 FLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP 325

Query: 995 E 995
            
Sbjct: 326 V 326

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  127 bits (321), Expect = 8e-30
 Identities = 104/336 (30%), Positives = 150/336 (44%), Gaps = 64/336 (19%)

Query: 675  EIPQSLSKCSSLQG--LFLSNNSLSGKIPRWLG----NLTVLRHIIMPKNHIEGPIPLEF 728
            E+   LS  SS+     +LSN + S  +  W G    N + +  I +   +I G I    
Sbjct: 30   ELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAI 89

Query: 729  CQLRILQILDISDNNISGSLPSCYDFVC--IEQVHLSKNMLHGQLKEGTFFNCLTLMILD 786
             +L  +Q +++S+N +SG +P         +  ++LS N   G +  G+  N   L  LD
Sbjct: 90   FRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPN---LETLD 146

Query: 787  LSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPS 846
            LS N L+G IP+ +   S L  L L  N L G++P  L  L  L+ L L++N L G IP 
Sbjct: 147  LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIP- 205

Query: 847  CFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSL 906
                    E                 +G M                KS+ + Y G     
Sbjct: 206  -------RE-----------------LGQM----------------KSLKWIYLGY---- 221

Query: 907  LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 966
                    N L G IP +IG LT +  L+L +NNL GPIPS+  NL+N++ L L  NKLS
Sbjct: 222  --------NNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS 273

Query: 967  WKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFAT 1002
              IP  +  L  L    ++ N+LSG+IPE   Q   
Sbjct: 274  GPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQN 309

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 84.1 bits (208), Expect = 1e-16
 Identities = 45/122 (36%), Positives = 67/122 (54%), Gaps = 8/122 (6%)

Query: 906  LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKL 965
             + GL L    L G IP  I  L  +Q++NLS N++ G IP +  ++ ++E LDLSYN  
Sbjct: 419  FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 966  SWKIPYQLVELNTLAVFSVAYNNLSGKIPE----RAAQFATFNESSYEGNPFLCG-PPLP 1020
            +  IP  L +L +L + ++  N+LSG++P     R    A+FN   +  N  LCG P L 
Sbjct: 479  NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN---FTDNAGLCGIPGLR 535

Query: 1021 IC 1022
             C
Sbjct: 536  AC 537

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.5 bits (157), Expect = 2e-10
 Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 1/89 (1%)

Query: 543 LSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGS 602
           L L N  L G     I   + L+ +++S N+ +G+IP  +G I S L V ++S N+ +GS
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITS-LEVLDLSYNSFNGS 481

Query: 603 IPSSFGNMNFLQFLDLSNNQLTGEIPEHL 631
           IP S G +  L+ L+L+ N L+G +P  L
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.9 bits (153), Expect = 7e-10
 Identities = 33/86 (38%), Positives = 49/86 (56%)

Query: 665 LQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPI 724
           L L+     G IP  +SK   LQ + LS NS+ G IP  LG++T L  + +  N   G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 725 PLEFCQLRILQILDISDNNISGSLPS 750
           P    QL  L+IL+++ N++SG +P+
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.5 bits (152), Expect = 7e-10
 Identities = 38/100 (38%), Positives = 58/100 (58%), Gaps = 1/100 (1%)

Query: 612 FLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNH 671
           F+  L L N  L G IP  ++     L+S+ LS N++ G++     ++T+L  L L  N 
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS 477

Query: 672 FVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLR 711
           F G IP+SL + +SL+ L L+ NSLSG++P  LG   + R
Sbjct: 478 FNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHR 517

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.4 bits (149), Expect = 2e-09
 Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 2/84 (2%)

Query: 567 LDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGE 626
           L +     +G IP +I   L  L   N+S N++ G+IP S G++  L+ LDLS N   G 
Sbjct: 423 LGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 627 IPEHLAMGCVSLRSLALSNNNLEG 650
           IPE L     SLR L L+ N+L G
Sbjct: 482 IPESLGQ-LTSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.9 bits (140), Expect = 2e-08
 Identities = 34/85 (40%), Positives = 45/85 (52%)

Query: 641 LALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKI 700
           L L N  L G + +    L +L  + L GN   G IP SL   +SL+ L LS NS +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 701 PRWLGNLTVLRHIIMPKNHIEGPIP 725
           P  LG LT LR + +  N + G +P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.1 bits (138), Expect = 4e-08
 Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 24/105 (22%)

Query: 720 IEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNC 779
           + G IP +  +LR LQ +++S N+I G++P                         +  + 
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPP------------------------SLGSI 465

Query: 780 LTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQL 824
            +L +LDLSYN  NG+IP+ +  L+ L  L L  N+L G VP  L
Sbjct: 466 TSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 55.1 bits (133), Expect = 8e-08
 Identities = 66/239 (27%), Positives = 94/239 (39%), Gaps = 48/239 (20%)

Query: 102 QLESLDLRDNDI--AGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLAR-----LSS 154
            L+ LDL DN +   GC     LE L R S+L+ L L  N   +  L  LA+       +
Sbjct: 82  GLQELDLSDNALGPDGC---GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPA 138

Query: 155 LTSLDLSANRL--KGSIDI-KELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVF 211
           L  L L  NRL       + K L + RDL++LN+  N I    +    + L    NL+V 
Sbjct: 139 LEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVL 198

Query: 212 DLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKE-FDSLSNLEELDMSYNEIDNF 270
           DL+ N   +                      EG+  + E   SL +LE L++  N + + 
Sbjct: 199 DLNNNGLTD----------------------EGASALAETLASLKSLEVLNLGDNNLTDA 236

Query: 271 EVPQACSGLRK---------LSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTE 320
                 S L           LS   +   G +D   L + +    SL  LDL  N F E
Sbjct: 237 GAAALASALLSPNISLLTLSLSCNDITDDGAKD---LAEVLAEKESLLELDLRGNKFGE 292

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 55.6 bits (134), Expect = 1e-07
 Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 3/71 (4%)

Query: 386 LVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSD 445
           L HLQ ++++ N +RG++P  L ++TSL +LD+S N   GSI  S L  LTS+  L L+ 
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLNG 499

Query: 446 NHF--QIPISL 454
           N    ++P +L
Sbjct: 500 NSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.7 bits (129), Expect = 5e-07
 Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 1/80 (1%)

Query: 785 LDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHI 844
           L L    L G IP+ +  L  L  + L+ N++ G +P  L  +  L++LDLS N+ +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 845 PSCFDNTTLHERYN-NGSSL 863
           P      T     N NG+SL
Sbjct: 483 PESLGQLTSLRILNLNGNSL 502

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.1 bits (125), Expect = 1e-06
 Identities = 25/73 (34%), Positives = 43/73 (58%)

Query: 782 LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH 841
           L  ++LS N + GNIP  +  ++ L  L L++N+  G +P  L +L  L++L+L+ N+L 
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 842 GHIPSCFDNTTLH 854
           G +P+      LH
Sbjct: 504 GRVPAALGGRLLH 516

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.7 bits (124), Expect = 2e-06
 Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 5/89 (5%)

Query: 158 LDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNL 217
           L L    L+G I   ++  LR L+ +N+  N I   +    P  L  + +L+V DLS N 
Sbjct: 423 LGLDNQGLRGFIP-NDISKLRHLQSINLSGNSIRGNI----PPSLGSITSLEVLDLSYNS 477

Query: 218 FNNSILSSLARLSSLRSLLLYDNRLEGSI 246
           FN SI  SL +L+SLR L L  N L G +
Sbjct: 478 FNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 3/44 (6%)

Query: 28 LNHERFALLQLKLFFIDPYN-YLLDWVDDEGATDCCQWERVSCN 70
          LN +R ALL  K       +  L  W     ++D C W  V+C+
Sbjct: 1  LNDDRDALLAFKSSLNGDPSGALSSWNPS--SSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.2 bits (120), Expect = 5e-06
 Identities = 36/116 (31%), Positives = 52/116 (44%), Gaps = 24/116 (20%)

Query: 688 GLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGS 747
           GL L N  L G IP  +  L  L+ I +  N I G IP     +  L++LD+S N+ +GS
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 748 LPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGL 803
           +P                   GQL         +L IL+L+ N L+G +P  + G 
Sbjct: 482 IPESL----------------GQLT--------SLRILNLNGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.5 bits (106), Expect = 5e-06
 Identities = 27/57 (47%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 910 LDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKL 965
           LDLS NRL   IP      L  ++ L+LS NNL    P  FS L ++ SLDLS N L
Sbjct: 5   LDLSNNRL-TVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 49.3 bits (118), Expect = 6e-06
 Identities = 57/263 (21%), Positives = 95/263 (36%), Gaps = 34/263 (12%)

Query: 242 LEGSIDVKE-FDSLSNLEELDMSYNEIDNFEVPQACSGLRK---LSYLHL----LRVGIR 293
           L  +    E    L  L+ L +  N +         S LR    L  L L         R
Sbjct: 9   LLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPR 68

Query: 294 DGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQ 353
               LLQ +     L  LDLS N          +      SL+EL +++  +      L+
Sbjct: 69  GLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLG--DRGLR 126

Query: 354 IIGESMPSIQY----LSLSNSSVSNNS-RTLDQGLCPLVHLQELHMADNDLRG----SLP 404
           ++ + +  +      L L  + +   S   L + L     L+EL++A+N +      +L 
Sbjct: 127 LLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALA 186

Query: 405 WCLANMTSLRILDVSSNQLI---GSISSSPLIHLTSIEDLILSDNHFQIPISLEP----- 456
             L    +L +LD+++N L     S  +  L  L S+E L L DN     ++        
Sbjct: 187 EGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN----NLTDAGAAALA 242

Query: 457 ---LFNHSRLKIFDAENNEINAE 476
              L  +  L       N+I  +
Sbjct: 243 SALLSPNISLLTLSLSCNDITDD 265

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.4 bits (118), Expect = 8e-06
 Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 6/77 (7%)

Query: 117 VENEGL-----ERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDI 171
           ++N+GL       +S+L +L+ +NL GN    +I  SL  ++SL  LDLS N   GSI  
Sbjct: 425 LDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP- 483

Query: 172 KELDSLRDLEKLNIGRN 188
           + L  L  L  LN+  N
Sbjct: 484 ESLGQLTSLRILNLNGN 500

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 48.8 bits (116), Expect = 1e-05
 Identities = 85/375 (22%), Positives = 138/375 (36%), Gaps = 27/375 (7%)

Query: 180 LEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNS--ILSSLARLSSLRSLLL 237
           LE + + R  ++           S L+ L   DL      +S     +L  L  L SL L
Sbjct: 42  LESVAVNRLALNLSSN-TLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDL 100

Query: 238 YDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSK 297
             NRL  +I   E   L+NL  LD+  N I +   P        L  L L    I     
Sbjct: 101 NLNRLRSNIS--ELLELTNLTSLDLDNNNITDIP-PLIGLLKSNLKELDLSDNKIES--- 154

Query: 298 LLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGE 357
           L   + + P+L  LDLS+N+ ++          +  +L  L +   +I+     +    E
Sbjct: 155 LPSPLRNLPNLKNLDLSFNDLSDLPK----LLSNLSNLNNLDLSGNKISDLPPEI----E 206

Query: 358 SMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILD 417
            + +++ L LSN    N+   L   L  L +L  L +++N L       + N+++L  LD
Sbjct: 207 LLSALEELDLSN----NSIIELLSSLSNLKNLSGLELSNNKLEDLPES-IGNLSNLETLD 261

Query: 418 VSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEI 477
           +S+NQ+    S S L  LT++ +L LS N     + L  L       + +        E+
Sbjct: 262 LSNNQI---SSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALEL 318

Query: 478 IESHSLTTPN-FQLQSLLLSSGYRDGITFPKFLYNQHDL-EYVRLSHIKMNEEFPNWLLE 535
             +  L   N                 +        + L E     +I  N      LL+
Sbjct: 319 KLNSILLNNNILSNGETSSPEALSILESLNNLWTLDNALDESNLNRYIVKNPNAIGSLLD 378

Query: 536 NNTKLRQLSLVNDSL 550
              K     L   + 
Sbjct: 379 LVKKHVNQLLEKVNY 393

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.5 bits (113), Expect = 4e-05
 Identities = 31/108 (28%), Positives = 57/108 (52%), Gaps = 7/108 (6%)

Query: 64  WERVSC--NNTMGRVVVLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEG 121
           W    C  ++T G+  +  L   ++G   ++  +  +  + L+S++L  N I G +    
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFI-PNDISKLRHLQSINLSGNSIRGNIPPS- 461

Query: 122 LERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSI 169
              L  +++L++L+L  N FN SI  SL +L+SL  L+L+ N L G +
Sbjct: 462 ---LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.8 bits (99), Expect = 5e-05
 Identities = 28/60 (46%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 782 LMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNL 840
           L  LDLS N L   IPD    GL  L  L L+ NNL    P     L  L+ LDLS NNL
Sbjct: 2   LKSLDLSNNRL-TVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 46.5 bits (110), Expect = 6e-05
 Identities = 57/168 (33%), Positives = 86/168 (51%), Gaps = 17/168 (10%)

Query: 102 QLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLS 161
            L+ LDL DN I           L  L NLK L+L  N   + +   L+ LS+L +LDLS
Sbjct: 141 NLKELDLSDNKIE-----SLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDLS 194

Query: 162 ANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNS 221
            N++   +   E++ L  LE+L++  N I + + S     LS L NL   +LS N   + 
Sbjct: 195 GNKIS-DLP-PEIELLSALEELDLSNNSIIELLSS-----LSNLKNLSGLELSNNKLEDL 247

Query: 222 ILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDN 269
              S+  LS+L +L L +N++     +    SL+NL ELD+S N + N
Sbjct: 248 P-ESIGNLSNLETLDLSNNQIS---SISSLGSLTNLRELDLSGNSLSN 291

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 46.5 bits (110), Expect = 6e-05
 Identities = 55/215 (25%), Positives = 86/215 (40%), Gaps = 26/215 (12%)

Query: 124 RLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKL 183
            L  L+NL  L+L  N   +         S+L  LDLS N+++       L +L +L+ L
Sbjct: 111 ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPS--PLRNLPNLKNL 168

Query: 184 NIGRNMIDKFVVSKG------------------PKRLSRLNNLKVFDLSGNLFNNSILSS 225
           ++  N +                          P  +  L+ L+  DLS N     +LSS
Sbjct: 169 DLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSS 227

Query: 226 LARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYL 285
           L+ L +L  L L +N+LE   +     +LSNLE LD+S N+I +     +   L  L  L
Sbjct: 228 LSNLKNLSGLELSNNKLEDLPESIG--NLSNLETLDLSNNQISSIS---SLGSLTNLREL 282

Query: 286 HLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTE 320
            L    + +   L+  +     L    L      E
Sbjct: 283 DLSGNSLSNALPLIALLLLLLELLLNLLLTLKALE 317

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 25/61 (40%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 588 RLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNN 647
            L   ++S N L      +F  +  L+ LDLS N LT  I      G  SLRSL LS NN
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 648 L 648
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.3 bits (107), Expect = 1e-04
 Identities = 63/219 (28%), Positives = 108/219 (49%), Gaps = 10/219 (4%)

Query: 534 LENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFN 593
           L   T L  L L N+++     L       L+ LD+S N  +  +P  + + L  L   +
Sbjct: 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRN-LPNLKNLD 169

Query: 594 ISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMF 653
           +S N L   +P    N++ L  LDLS N+++ ++P  + +   +L  L LSNN++   + 
Sbjct: 170 LSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIEL-LSALEELDLSNNSIIELLS 226

Query: 654 SRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHI 713
           S + NL NL  L+L  N  + ++P+S+   S+L+ L LSNN +S      LG+LT LR +
Sbjct: 227 SLS-NLKNLSGLELSNN-KLEDLPESIGNLSNLETLDLSNNQIS--SISSLGSLTNLREL 282

Query: 714 IMPKNHIEGPIPLEF-CQLRILQILDISDNNISGSLPSC 751
            +  N +   +PL     L +  +L++     +  L   
Sbjct: 283 DLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLN 321

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.7 bits (103), Expect = 5e-04
 Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 539 KLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNA 598
            L+ ++L  +S+ G     + S   L +LD+S N+F G IP  +G  L+ L + N++ N+
Sbjct: 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ-LTSLRILNLNGNS 501

Query: 599 LDGSIPSSFG 608
           L G +P++ G
Sbjct: 502 LSGRVPAALG 511

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 5e-04
 Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 231 SLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHL 287
           +L+SL L +NRL   I    F  L NL+ LD+S N + +   P+A SGL  L  L L
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSIS-PEAFSGLPSLRSLDL 55

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.3 bits (90), Expect = 8e-04
 Identities = 16/60 (26%), Positives = 25/60 (41%)

Query: 661 NLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHI 720
           NL  L L  N        +     +L+ L LS N+L+   P     L  LR + +  N++
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 207 NLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNE 266
           NLK  DLS N        +   L +L+ L L  N L  SI  + F  L +L  LD+S N 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 267 I 267
           +
Sbjct: 60  L 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.5 bits (97), Expect = 0.002
 Identities = 66/228 (28%), Positives = 102/228 (44%), Gaps = 23/228 (10%)

Query: 778  NCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSN 837
            N L L  LDL+ N L  NI   +  L+ L+ L L +NN+    P+     + L+ LDLS+
Sbjct: 91   NLLPLPSLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSD 149

Query: 838  NNLHGHIPSCFDNTTLHER----YNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTK 893
            N +   +PS   N    +     +N+ S L    +                L + D +  
Sbjct: 150  NKI-ESLPSPLRNLPNLKNLDLSFNDLSDLPKLLS------------NLSNLNNLDLSGN 196

Query: 894  SIT-YTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNL 952
             I+    +  + S L  LDLS N +I  +   + NL  +  L LS+N L   +P +  NL
Sbjct: 197  KISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNL 254

Query: 953  RNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQF 1000
             N+E+LDLS N++S      L  L  L    ++ N+LS  +P  A   
Sbjct: 255  SNLETLDLSNNQIS--SISSLGSLTNLRELDLSGNSLSNALPLIALLL 300

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 130 NLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNM 189
           NLK L+L  N        +   L +L  LDLS N L  SI  +    L  L  L++  N 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 190 I 190
           +
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 563 QLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQ 622
            L+ LD+S N     IP      L  L V ++S N L    P +F  +  L+ LDLS N 
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 623 L 623
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.004
 Identities = 27/63 (42%), Positives = 34/63 (53%), Gaps = 7/63 (11%)

Query: 613 LQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEG---HMFSRNFNLTNLIWLQLEG 669
           L+ LDLSNN+LT  IP+    G  +L+ L LS NNL       FS    L +L  L L G
Sbjct: 2   LKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFS---GLPSLRSLDLSG 57

Query: 670 NHF 672
           N+ 
Sbjct: 58  NNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1102
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.93
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.85
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.77
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.77
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.68
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.64
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.63
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.61
PLN03150	623	hypothetical protein; Provisional	99.55
PLN03150	623	hypothetical protein; Provisional	99.37
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.18
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.15
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.12
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.1
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.09
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.07
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.07
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.06
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.97
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.95
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.89
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.82
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.8
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.77
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.72
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.7
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.69
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.64
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.58
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.5
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.46
KOG4341	483	consensus F-box protein containing LRR [General fu	98.42
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.4
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.35
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.33
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.23
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.2
KOG4341	483	consensus F-box protein containing LRR [General fu	98.19
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.17
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.11
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.98
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.85
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.76
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.76
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.67
PRK15386	426	type III secretion protein GogB; Provisional	97.5
PRK15386	426	type III secretion protein GogB; Provisional	97.5
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.48
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.44
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.39
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.34
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.93
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.89
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.74
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.65
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.52
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.31
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.0
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.92
KOG4308	478	consensus LRR-containing protein [Function unknown	94.7
KOG4308	478	consensus LRR-containing protein [Function unknown	94.57
KOG3864	221	consensus Uncharacterized conserved protein [Funct	89.95
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	89.51
KOG0473	326	consensus Leucine-rich repeat protein [Function un	89.32
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.48
smart00370	26	LRR Leucine-rich repeats, outliers.	88.48
smart00370	26	LRR Leucine-rich repeats, outliers.	88.09
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.09
KOG3864	221	consensus Uncharacterized conserved protein [Funct	85.6
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	84.64

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.3e-68  Score=687.28  Aligned_cols=352  Identities=36%  Similarity=0.533  Sum_probs=255.7

Q ss_pred             CCcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEE
Q 001313          562 KQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSL  641 (1102)
Q Consensus       562 ~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L  641 (1102)
                      ++|++|++++|.+.+.+|..+.. +++|++|++++|.+.+.+|..+.++++|++|++++|.+++.+              
T Consensus       260 ~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~--------------  324 (968)
T PLN00113        260 KNLQYLFLYQNKLSGPIPPSIFS-LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI--------------  324 (968)
T ss_pred             CCCCEEECcCCeeeccCchhHhh-ccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcC--------------
Confidence            34445555555555555544443 445555555555554444444444444444444444444433              


Q ss_pred             EccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCccc
Q 001313          642 ALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIE  721 (1102)
Q Consensus       642 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~  721 (1102)
                                 |..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|.++..+++|+.|++++|.+.
T Consensus       325 -----------~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~  393 (968)
T PLN00113        325 -----------PVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLE  393 (968)
T ss_pred             -----------ChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEec
Confidence                       333444555555555555555555555555556666666666665555655555556666666666666


Q ss_pred             CCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCcccc
Q 001313          722 GPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVD  801 (1102)
Q Consensus       722 ~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~  801 (1102)
                      +.+|..+..+++|+.|++++|++++                       .+|. .|.+++.|+.|++++|.+++.+|..+.
T Consensus       394 ~~~p~~~~~~~~L~~L~L~~n~l~~-----------------------~~p~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~  449 (968)
T PLN00113        394 GEIPKSLGACRSLRRVRLQDNSFSG-----------------------ELPS-EFTKLPLVYFLDISNNNLQGRINSRKW  449 (968)
T ss_pred             ccCCHHHhCCCCCCEEECcCCEeee-----------------------ECCh-hHhcCCCCCEEECcCCcccCccChhhc
Confidence            5666556555666655555555543                       3444 566777777888888888877777777


Q ss_pred             CCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCcc
Q 001313          802 GLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPK  881 (1102)
Q Consensus       802 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  881 (1102)
                      .+++|+.|++++|++.+.+|..+ ..++|+.||+++|++++.+|..+.++.                             
T Consensus       450 ~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~-----------------------------  499 (968)
T PLN00113        450 DMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLS-----------------------------  499 (968)
T ss_pred             cCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhh-----------------------------
Confidence            78888888888888887777765 457899999999999988888776554                             


Q ss_pred             ccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCC
Q 001313          882 KQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLS  961 (1102)
Q Consensus       882 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  961 (1102)
                                              .|+.|+|++|++.+.+|+.++++++|++|+|++|.++|.+|..|+++++|+.|||+
T Consensus       500 ------------------------~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  555 (968)
T PLN00113        500 ------------------------ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLS  555 (968)
T ss_pred             ------------------------ccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECC
Confidence                                    57889999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCcccCchhhhcCCCCCEEEcccCcCcccCCccccccCCCCccccCCCCCCCCCC
Q 001313          962 YNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPP 1018 (1102)
Q Consensus       962 ~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~gN~~lC~~~ 1018 (1102)
                      +|+++|.+|..+.++++|+++++++|+++|.+|. .+++.++...++.|||.+||.+
T Consensus       556 ~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~-~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        556 QNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS-TGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             CCcccccCChhHhcCcccCEEeccCCcceeeCCC-cchhcccChhhhcCCccccCCc
Confidence            9999999999999999999999999999999998 6889999999999999999865

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3e-56  Score=572.87  Aligned_cols=518  Identities=31%  Similarity=0.503  Sum_probs=379.0

Q ss_pred             CCCcEEecccCcCcCCcccccCCccCCCCccEEEcCCCcCCCCcchhcc-CCCCCcEEEcCCCccccccCCcccccCCcc
Q 001313          360 PSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLA-NMTSLRILDVSSNQLIGSISSSPLIHLTSI  438 (1102)
Q Consensus       360 ~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L  438 (1102)
                      .+++.|+++++.+.+..+.   .+..+++|+.|+|++|.+.+.+|..+. .+++|++|++++|.+++.++.   ..+++|
T Consensus        69 ~~v~~L~L~~~~i~~~~~~---~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L  142 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISS---AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNL  142 (968)
T ss_pred             CcEEEEEecCCCccccCCh---HHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCC
Confidence            4677777777776665544   566667777777777776666665543 666666666666666654421   233444


Q ss_pred             CeeecCCcccccccCccccccCCcceEEecCCCccchhhhccccCCCCcccceeeeeccCCCCCCccCccccCCCcccEE
Q 001313          439 EDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYV  518 (1102)
Q Consensus       439 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~p~~l~~~~~L~~L  518 (1102)
                      ++|++++|.+.                                                                     
T Consensus       143 ~~L~Ls~n~~~---------------------------------------------------------------------  153 (968)
T PLN00113        143 ETLDLSNNMLS---------------------------------------------------------------------  153 (968)
T ss_pred             CEEECcCCccc---------------------------------------------------------------------
Confidence            44444444333                                                                     


Q ss_pred             EeccccCCCCCChhhhhcCCCCcEEEccCCCCcCCCcCCCCCCCCcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCc
Q 001313          519 RLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNA  598 (1102)
Q Consensus       519 ~ls~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~  598 (1102)
                              +.+|.. ++++++|++|++++|.+.+..+..+..+++|++|++++|.+.+.+|..+.. +++|++|++++|+
T Consensus       154 --------~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~  223 (968)
T PLN00113        154 --------GEIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ-MKSLKWIYLGYNN  223 (968)
T ss_pred             --------ccCChH-HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcC-cCCccEEECcCCc
Confidence                    222322 224444555555555444444444455555566666666665555555544 5666666666666


Q ss_pred             ccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccCccCcccCCC
Q 001313          599 LDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQ  678 (1102)
Q Consensus       599 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  678 (1102)
                      +.+.+|..|+++++|++|++++|++++.+|..+ ..+++|+.|++++|.+++..|..+.++++|++|++++|.+.+.+|.
T Consensus       224 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~  302 (968)
T PLN00113        224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL-GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE  302 (968)
T ss_pred             cCCcCChhHhcCCCCCEEECcCceeccccChhH-hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh
Confidence            666666666666666666666666665555544 3566666666666666666666666666666666666666666666


Q ss_pred             CcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCC-CCccc
Q 001313          679 SLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCY-DFVCI  757 (1102)
Q Consensus       679 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~-~~~~L  757 (1102)
                      .+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|++++.+|..+ ...++
T Consensus       303 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L  382 (968)
T PLN00113        303 LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNL  382 (968)
T ss_pred             hHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCC
Confidence            66666666666666666666666666666666666666666666666666666667777777776666666544 34566


Q ss_pred             cEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcC
Q 001313          758 EQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSN  837 (1102)
Q Consensus       758 ~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~  837 (1102)
                      +.+++++|++.+.+|. .+.++++|+.|++++|++++.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++
T Consensus       383 ~~L~l~~n~l~~~~p~-~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  461 (968)
T PLN00113        383 FKLILFSNSLEGEIPK-SLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR  461 (968)
T ss_pred             CEEECcCCEecccCCH-HHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcC
Confidence            7777777777777777 888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCC
Q 001313          838 NNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRL  917 (1102)
Q Consensus       838 N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l  917 (1102)
                      |++.+.+|..+..                                                      ..|+.|||++|++
T Consensus       462 n~~~~~~p~~~~~------------------------------------------------------~~L~~L~ls~n~l  487 (968)
T PLN00113        462 NKFFGGLPDSFGS------------------------------------------------------KRLENLDLSRNQF  487 (968)
T ss_pred             ceeeeecCccccc------------------------------------------------------ccceEEECcCCcc
Confidence            9999988875431                                                      1588999999999


Q ss_pred             CCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCCccc
Q 001313          918 IGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERA  997 (1102)
Q Consensus       918 ~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~  997 (1102)
                      ++.+|..|.++++|+.|+|++|++++.+|..+.++++|++|+|++|+++|.+|..+.++++|+.||+++|+++|.+|..+
T Consensus       488 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l  567 (968)
T PLN00113        488 SGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNL  567 (968)
T ss_pred             CCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             cccCCCCccccCCCCCCCCCC
Q 001313          998 AQFATFNESSYEGNPFLCGPP 1018 (1102)
Q Consensus       998 ~~~~~~~~~~~~gN~~lC~~~ 1018 (1102)
                      ..+..+...++.+|+..+..|
T Consensus       568 ~~l~~L~~l~ls~N~l~~~~p  588 (968)
T PLN00113        568 GNVESLVQVNISHNHLHGSLP  588 (968)
T ss_pred             hcCcccCEEeccCCcceeeCC
Confidence            888888899999999776443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=8.3e-39  Score=341.16  Aligned_cols=375  Identities=23%  Similarity=0.248  Sum_probs=224.7

Q ss_pred             CCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeec
Q 001313          588 RLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQL  667 (1102)
Q Consensus       588 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  667 (1102)
                      .-+.|++++|++..+.+..|.++++|+.+++.+|.++ .||.... ...+|+.|+|.+|.|+.+..+.+..++.|+.|||
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~-~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL  156 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGH-ESGHLEKLDLRHNLISSVTSEELSALPALRSLDL  156 (873)
T ss_pred             ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccc-cccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence            3445555555555555555555666666666666555 5554331 2334566666666665555555555556666666


Q ss_pred             cCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccC
Q 001313          668 EGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGS  747 (1102)
Q Consensus       668 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~  747 (1102)
                      +.|.|+.+....|..-.++++|+|++|+|+..-...|..+.+|.+|.|++|+++...+..|.++++|+.|||..|+|...
T Consensus       157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv  236 (873)
T KOG4194|consen  157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV  236 (873)
T ss_pred             hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence            66665544444555555566666666666555555555555666666666666555555555566666666666655432


Q ss_pred             -CCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcC
Q 001313          748 -LPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCR  826 (1102)
Q Consensus       748 -~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  826 (1102)
                       ...+-++.+|+.|.+..|++. .+..++|..|.++++|+|+.|+++..-..|+.++++|+.|+|+.|.|....++.+..
T Consensus       237 e~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf  315 (873)
T KOG4194|consen  237 EGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSF  315 (873)
T ss_pred             hhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhh
Confidence             222234556666666666655 355567777777777777777777666667777777777777777777666777777


Q ss_pred             CCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCC
Q 001313          827 LNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSL  906 (1102)
Q Consensus       827 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  906 (1102)
                      +++|+.|||++|+++...|+.|..+.                                                     .
T Consensus       316 tqkL~~LdLs~N~i~~l~~~sf~~L~-----------------------------------------------------~  342 (873)
T KOG4194|consen  316 TQKLKELDLSSNRITRLDEGSFRVLS-----------------------------------------------------Q  342 (873)
T ss_pred             cccceeEeccccccccCChhHHHHHH-----------------------------------------------------H
Confidence            77777777777777766555554433                                                     4


Q ss_pred             CceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcc---cccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEE
Q 001313          907 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPS---TFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFS  983 (1102)
Q Consensus       907 L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~  983 (1102)
                      |+.|.|++|++...-...|..+++|+.|||++|.|++.|-+   .|.+|++|+.|+|.+|+|..+....|.++..|+.||
T Consensus       343 Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~Ld  422 (873)
T KOG4194|consen  343 LEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLD  422 (873)
T ss_pred             hhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceec
Confidence            56666666666654445566666666666666666665543   355666666666666666644445666666666666


Q ss_pred             cccCcCcccCCccccccCCCCccccCCCCCCCCCCC
Q 001313          984 VAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPL 1019 (1102)
Q Consensus       984 ls~N~l~~~~p~~~~~~~~~~~~~~~gN~~lC~~~~ 1019 (1102)
                      |.+|.+...-|+.+.++ .+..+.+..-.++|+|++
T Consensus       423 L~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql  457 (873)
T KOG4194|consen  423 LGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQL  457 (873)
T ss_pred             CCCCcceeecccccccc-hhhhhhhcccceEEeccH
Confidence            66666665555545554 444444444455666543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-38  Score=339.78  Aligned_cols=368  Identities=27%  Similarity=0.277  Sum_probs=220.6

Q ss_pred             EEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccc
Q 001313          566 LLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSN  645 (1102)
Q Consensus       566 ~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~  645 (1102)
                      .||+++|++. .+....+..+++|+++++.+|.++ .+|...+...+|+.|+|.+|.|+ ++.......++.|+.|||+.
T Consensus        82 ~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDLSr  158 (873)
T KOG4194|consen   82 TLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDLSR  158 (873)
T ss_pred             eeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhhhh
Confidence            3444444443 232232333444444444444444 33433333333444444444444 33333333444444444444


Q ss_pred             cccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCc
Q 001313          646 NNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIP  725 (1102)
Q Consensus       646 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~  725 (1102)
                      |.++.+....|-.-.++++|+|++|.|+..-...|..+.+|.+|.|+.|+++...+..|.++++|+.|+|..|+|.-.--
T Consensus       159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~  238 (873)
T KOG4194|consen  159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEG  238 (873)
T ss_pred             chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehh
Confidence            44444444444444444444444444444444444444455555555555543333444445555555555554443223


Q ss_pred             ccccCCCcccEEEccCcccccCCCC-CCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCC
Q 001313          726 LEFCQLRILQILDISDNNISGSLPS-CYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLS  804 (1102)
Q Consensus       726 ~~~~~l~~L~~L~ls~n~l~~~~p~-~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~  804 (1102)
                      .+|.++++|+.|.+..|.++..-.. ++++..+++|+|+.|++. .+..+.+.++++|+.|++|+|.|..+.++.+.-++
T Consensus       239 ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq  317 (873)
T KOG4194|consen  239 LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ-AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ  317 (873)
T ss_pred             hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh-hhhcccccccchhhhhccchhhhheeecchhhhcc
Confidence            3445555555555555544432221 224445555555555554 34455777888888888888888888888888888


Q ss_pred             CCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccc
Q 001313          805 QLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQI  884 (1102)
Q Consensus       805 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  884 (1102)
                      +|++|+|++|+++...+..|..+..|+.|.|++|+++..-...|..+.                                
T Consensus       318 kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~ls--------------------------------  365 (873)
T KOG4194|consen  318 KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLS--------------------------------  365 (873)
T ss_pred             cceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhh--------------------------------
Confidence            888888888888877788888888888888888888754444443333                                


Q ss_pred             cceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCccc---ccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCC
Q 001313          885 LESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQ---IGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLS  961 (1102)
Q Consensus       885 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~---~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  961 (1102)
                                           +|+.|||++|.+++.|-+.   |..|++|+.|+|.+|+|..+...+|.++..||+|||.
T Consensus       366 ---------------------sL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~  424 (873)
T KOG4194|consen  366 ---------------------SLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLG  424 (873)
T ss_pred             ---------------------hhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCC
Confidence                                 6778888888888766543   7788888888999998887777888888899999999


Q ss_pred             CCcCcccCchhhhcCCCCCEEEcccCcCcc
Q 001313          962 YNKLSWKIPYQLVELNTLAVFSVAYNNLSG  991 (1102)
Q Consensus       962 ~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~  991 (1102)
                      +|-|..+-|..|..+ .|+.|-+..-++-|
T Consensus       425 ~NaiaSIq~nAFe~m-~Lk~Lv~nSssflC  453 (873)
T KOG4194|consen  425 DNAIASIQPNAFEPM-ELKELVMNSSSFLC  453 (873)
T ss_pred             CCcceeecccccccc-hhhhhhhcccceEE
Confidence            998888888888888 78777666555544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2.6e-38  Score=323.32  Aligned_cols=475  Identities=28%  Similarity=0.416  Sum_probs=345.8

Q ss_pred             CCCcEEecccCcCcCCcccccCCccCCCCccEEEcCCCcCCCCcchhccCCCCCcEEEcCCCccccccCCcccccCCccC
Q 001313          360 PSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIE  439 (1102)
Q Consensus       360 ~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~  439 (1102)
                      ..|+.+.+++|.+....+    .+.++..|.++++.+|+++ ..|++++.+..++.++++.|++. .+ |..+..+.+|.
T Consensus        45 v~l~~lils~N~l~~l~~----dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~l-p~~i~s~~~l~  117 (565)
T KOG0472|consen   45 VDLQKLILSHNDLEVLRE----DLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-EL-PEQIGSLISLV  117 (565)
T ss_pred             cchhhhhhccCchhhccH----hhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hc-cHHHhhhhhhh
Confidence            345566666665544333    3445566666666666665 45555666666666666666654 33 44555555555


Q ss_pred             eeecCCcccccccCccccccCCcceEEecCCCccchhhhccccCCCCcccceeeeeccCCCCCCccCccccCCCcccEEE
Q 001313          440 DLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVR  519 (1102)
Q Consensus       440 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~p~~l~~~~~L~~L~  519 (1102)
                      .++++.|.+..                                                      .|..+..+..++.++
T Consensus       118 ~l~~s~n~~~e------------------------------------------------------l~~~i~~~~~l~dl~  143 (565)
T KOG0472|consen  118 KLDCSSNELKE------------------------------------------------------LPDSIGRLLDLEDLD  143 (565)
T ss_pred             hhhccccceee------------------------------------------------------cCchHHHHhhhhhhh
Confidence            55555554431                                                      122223333444444


Q ss_pred             eccccCCCCCChhhhhcCCCCcEEEccCCCCcCCCcCCCCCCCCcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcc
Q 001313          520 LSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNAL  599 (1102)
Q Consensus       520 ls~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l  599 (1102)
                      ..+|++...                          +..+.++.++..+++.+|++. ..|+.... ++.|++||...|-+
T Consensus       144 ~~~N~i~sl--------------------------p~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~~N~L  195 (565)
T KOG0472|consen  144 ATNNQISSL--------------------------PEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCNSNLL  195 (565)
T ss_pred             ccccccccC--------------------------chHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcccchhhh
Confidence            444444322                          333446677889999999998 66666665 78999999999988


Q ss_pred             cccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccCccCcccCCCC
Q 001313          600 DGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQS  679 (1102)
Q Consensus       600 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  679 (1102)
                      + .+|..++.+.+|..|++.+|++. .+|+  |.+|..|++++++.|+++....+...+++++.+||+.+|+++ ..|+.
T Consensus       196 ~-tlP~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde  270 (565)
T KOG0472|consen  196 E-TLPPELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDE  270 (565)
T ss_pred             h-cCChhhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchH
Confidence            7 78889999999999999999998 8994  458999999999999998776666779999999999999998 78999


Q ss_pred             cCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCC---cccEEE-------ccCc-------
Q 001313          680 LSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLR---ILQILD-------ISDN-------  742 (1102)
Q Consensus       680 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~---~L~~L~-------ls~n-------  742 (1102)
                      +..+.+|+.||+++|.++ ..|..++++ .|+.|.+.+|.+..+ -..+-+..   -|++|.       ++.-       
T Consensus       271 ~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTi-Rr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~  347 (565)
T KOG0472|consen  271 ICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTI-RREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETA  347 (565)
T ss_pred             HHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHH-HHHHHcccHHHHHHHHHHhhccCCCCCCccccccc
Confidence            999999999999999998 688889999 899999999987632 21111111   011111       1111       


Q ss_pred             --ccccCCCCCCCCccccEEEccCcccccccCcccccCcc--CccEEEccCccCcccCCccccCCCCCCE-EEccCcccc
Q 001313          743 --NISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCL--TLMILDLSYNHLNGNIPDRVDGLSQLSY-LILAHNNLE  817 (1102)
Q Consensus       743 --~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~--~L~~L~Ls~n~l~~~~p~~~~~l~~L~~-L~L~~N~l~  817 (1102)
                        ...+..|+.....+.+.|+++.-+++ .+|...|..-.  -....+++.|++. .+|..+..+..+.+ +.+++|.+.
T Consensus       348 ~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is  425 (565)
T KOG0472|consen  348 MTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS  425 (565)
T ss_pred             CCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc
Confidence              01122333344567788888888887 47775555433  3778899999998 68887777766655 455555554


Q ss_pred             ccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceee
Q 001313          818 GEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITY  897 (1102)
Q Consensus       818 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  897 (1102)
                       .+|..++.+++|..|+|++|.+. .+|..++.+.                                             
T Consensus       426 -fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv---------------------------------------------  458 (565)
T KOG0472|consen  426 -FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLV---------------------------------------------  458 (565)
T ss_pred             -cchHHHHhhhcceeeecccchhh-hcchhhhhhh---------------------------------------------
Confidence             89999999999999999999876 5565544432                                             


Q ss_pred             eccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCC
Q 001313          898 TYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELN  977 (1102)
Q Consensus       898 ~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  977 (1102)
                              .|+.||+|.|+|. .+|+.+..+..++.+-.++|++....|+.+.++.+|.+|||.+|.+. .||..+++++
T Consensus       459 --------~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnmt  528 (565)
T KOG0472|consen  459 --------RLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMT  528 (565)
T ss_pred             --------hhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhcccc
Confidence                    5889999999997 78998888888898888889999888888999999999999999998 7899999999


Q ss_pred             CCCEEEcccCcCc
Q 001313          978 TLAVFSVAYNNLS  990 (1102)
Q Consensus       978 ~L~~l~ls~N~l~  990 (1102)
                      +|+.|++++|++.
T Consensus       529 nL~hLeL~gNpfr  541 (565)
T KOG0472|consen  529 NLRHLELDGNPFR  541 (565)
T ss_pred             ceeEEEecCCccC
Confidence            9999999999997

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2e-37  Score=316.86  Aligned_cols=453  Identities=30%  Similarity=0.425  Sum_probs=275.4

Q ss_pred             CCCccEEEcCCCcCCCCcchhccCCCCCcEEEcCCCccccccCCcccccCCccCeeecCCcccccccCccccccCCcceE
Q 001313          386 LVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKI  465 (1102)
Q Consensus       386 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~  465 (1102)
                      -..|+.+.+++|.+.. +...+.++..|.+|++.+|++. .. |.+++.+..++.++.+.|++..               
T Consensus        44 qv~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~l-p~aig~l~~l~~l~vs~n~ls~---------------  105 (565)
T KOG0472|consen   44 QVDLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QL-PAAIGELEALKSLNVSHNKLSE---------------  105 (565)
T ss_pred             hcchhhhhhccCchhh-ccHhhhcccceeEEEeccchhh-hC-CHHHHHHHHHHHhhcccchHhh---------------
Confidence            4567888888888874 4445778888888888888876 33 5666677777777766665540               


Q ss_pred             EecCCCccchhhhccccCCCCcccceeeeeccCCCCCCccCccccCCCcccEEEeccccCCCCCChhhhhcCCCCcEEEc
Q 001313          466 FDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSL  545 (1102)
Q Consensus       466 L~l~~n~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~p~~l~~~~~L~~L~ls~~~~~~~~p~~~~~~~~~L~~L~L  545 (1102)
                                                                                     +|+.             
T Consensus       106 ---------------------------------------------------------------lp~~-------------  109 (565)
T KOG0472|consen  106 ---------------------------------------------------------------LPEQ-------------  109 (565)
T ss_pred             ---------------------------------------------------------------ccHH-------------
Confidence                                                                           1111             


Q ss_pred             cCCCCcCCCcCCCCCCCCcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEEccCccccc
Q 001313          546 VNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTG  625 (1102)
Q Consensus       546 ~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  625 (1102)
                                  +....++..+++++|.+. ++|++++. +..++.++..+|+++ ..|.++.++.+|..+++.+|+++ 
T Consensus       110 ------------i~s~~~l~~l~~s~n~~~-el~~~i~~-~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-  173 (565)
T KOG0472|consen  110 ------------IGSLISLVKLDCSSNELK-ELPDSIGR-LLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-  173 (565)
T ss_pred             ------------Hhhhhhhhhhhcccccee-ecCchHHH-Hhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-
Confidence                        112233444444444444 45555554 445555555555555 44555555555555555555555 


Q ss_pred             ccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCcccc
Q 001313          626 EIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLG  705 (1102)
Q Consensus       626 ~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~  705 (1102)
                      .+|+... .++.|++||...|-++. +|..++.+.+|+.|++..|++. .+| .|.+|..|++|+++.|++. .+|....
T Consensus       174 ~l~~~~i-~m~~L~~ld~~~N~L~t-lP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~  248 (565)
T KOG0472|consen  174 ALPENHI-AMKRLKHLDCNSNLLET-LPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHL  248 (565)
T ss_pred             hCCHHHH-HHHHHHhcccchhhhhc-CChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHh
Confidence            4444332 25555555555555442 3444555566666666666655 344 5556666666666666655 4444433


Q ss_pred             -CCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCccccc---------------
Q 001313          706 -NLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHG---------------  769 (1102)
Q Consensus       706 -~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~---------------  769 (1102)
                       +++++.+||+.+|+++ ..|+.++-+.+|++||+|+|.+++..+....+ .|+.|.+.+|.+..               
T Consensus       249 ~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLK  326 (565)
T KOG0472|consen  249 KHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLK  326 (565)
T ss_pred             cccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHH
Confidence             5566666666666665 45555666666666666666665433333333 55555555555421               


Q ss_pred             ----------------------ccCccc---ccCccCccEEEccCccCcccCCccccCCCC---CCEEEccCccccccCc
Q 001313          770 ----------------------QLKEGT---FFNCLTLMILDLSYNHLNGNIPDRVDGLSQ---LSYLILAHNNLEGEVP  821 (1102)
Q Consensus       770 ----------------------~i~~~~---~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~---L~~L~L~~N~l~~~~p  821 (1102)
                                            ..|...   ...+.+.+.|++++-+++ .+|+....-..   ....+++.|++. ++|
T Consensus       327 yLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elP  404 (565)
T KOG0472|consen  327 YLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELP  404 (565)
T ss_pred             HHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhh
Confidence                                  011111   112334455555555555 23332222111   445555555555 455


Q ss_pred             hhhcCCCCCCE-EECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeecc
Q 001313          822 IQLCRLNQLQL-LDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQ  900 (1102)
Q Consensus       822 ~~~~~l~~L~~-L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  900 (1102)
                      ..+..++.+.+ +++++|.+ +-+|..+..                                                  
T Consensus       405 k~L~~lkelvT~l~lsnn~i-sfv~~~l~~--------------------------------------------------  433 (565)
T KOG0472|consen  405 KRLVELKELVTDLVLSNNKI-SFVPLELSQ--------------------------------------------------  433 (565)
T ss_pred             hhhHHHHHHHHHHHhhcCcc-ccchHHHHh--------------------------------------------------
Confidence            54444444332 22333322 222222221                                                  


Q ss_pred             CCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCC
Q 001313          901 GRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLA  980 (1102)
Q Consensus       901 ~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  980 (1102)
                         .+.++.|+|++|-+. .+|.+++.+..|+.||+|+|+|. .+|..+..+..||.+-.++|++....|+.+.++..|.
T Consensus       434 ---l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~  508 (565)
T KOG0472|consen  434 ---LQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLT  508 (565)
T ss_pred             ---hhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcc
Confidence               236889999998886 79999999999999999999999 8899988888899998899999977777799999999


Q ss_pred             EEEcccCcCcccCCccccccCCCCccccCCCCCC
Q 001313          981 VFSVAYNNLSGKIPERAAQFATFNESSYEGNPFL 1014 (1102)
Q Consensus       981 ~l~ls~N~l~~~~p~~~~~~~~~~~~~~~gN~~l 1014 (1102)
                      .||+.+|.+....|. ++.+.++..+.+.|||+-
T Consensus       509 tLDL~nNdlq~IPp~-LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  509 TLDLQNNDLQQIPPI-LGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             eeccCCCchhhCChh-hccccceeEEEecCCccC
Confidence            999999999855444 899999999999999975

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=6.8e-33  Score=312.75  Aligned_cols=227  Identities=26%  Similarity=0.309  Sum_probs=161.6

Q ss_pred             CCCCCCcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCC
Q 001313          558 IHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVS  637 (1102)
Q Consensus       558 ~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~  637 (1102)
                      +..+.+|+.++..+|+++ .+|..++. ..+|+.|.+..|.+. -+|....+++.|++|+|..|++. .+|+.++.....
T Consensus       260 i~~~~nle~l~~n~N~l~-~lp~ri~~-~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~  335 (1081)
T KOG0618|consen  260 IGACANLEALNANHNRLV-ALPLRISR-ITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNA  335 (1081)
T ss_pred             HHhcccceEecccchhHH-hhHHHHhh-hhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhH
Confidence            345666777777777775 77887776 688888888888888 56667778888999999999887 888877655544


Q ss_pred             -CcEEEccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECC
Q 001313          638 -LRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMP  716 (1102)
Q Consensus       638 -L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  716 (1102)
                       |..|+.+.|++.......-...+.|+.|++.+|.++...-..+.+.++|+.|+|++|++.......+.++..|++|+|+
T Consensus       336 ~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LS  415 (1081)
T KOG0618|consen  336 SLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLS  415 (1081)
T ss_pred             HHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcc
Confidence             7888888888876554444567788888888888887777777888888888888888874444567778888888888


Q ss_pred             CCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCcc
Q 001313          717 KNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNH  791 (1102)
Q Consensus       717 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~  791 (1102)
                      +|+++ .+|.++..+..|++|...+|.+. .+|+...++.|+.++++.|+++...-.... ..++|++||+++|.
T Consensus       416 GNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  416 GNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFPELAQLPQLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNT  487 (1081)
T ss_pred             cchhh-hhhHHHHhhhhhHHHhhcCCcee-echhhhhcCcceEEecccchhhhhhhhhhC-CCcccceeeccCCc
Confidence            88887 67788888888888888888776 445555555555555555555432111011 11455555555554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.96  E-value=2.5e-32  Score=308.16  Aligned_cols=485  Identities=25%  Similarity=0.331  Sum_probs=286.5

Q ss_pred             CcEEecccCcCcCCcccccCCccCCCCccEEEcCCCcCCCCcchhccCCCCCcEEEcCCCccccccCCcccccCCccCee
Q 001313          362 IQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDL  441 (1102)
Q Consensus       362 L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L  441 (1102)
                      ++.|+++.|.+....-.   .+....+|+.|++++|.+. ..|..+..+.+|+.|+++.|.+. .. +....++.+|+++
T Consensus        23 ~~~ln~~~N~~l~~pl~---~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~v-p~s~~~~~~l~~l   96 (1081)
T KOG0618|consen   23 LQILNLRRNSLLSRPLE---FVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SV-PSSCSNMRNLQYL   96 (1081)
T ss_pred             HHhhhccccccccCchH---HhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hC-chhhhhhhcchhh
Confidence            55556655544332211   2233444777777766654 45666666667777777776654 33 4555566666666


Q ss_pred             ecCCcccccccCccccccCCcceEEecCCCccchhhhccccCCCCcccceeeeeccCCCCCCccCccccCCCcccEEEec
Q 001313          442 ILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLS  521 (1102)
Q Consensus       442 ~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~p~~l~~~~~L~~L~ls  521 (1102)
                      .|.+|.+. ..| ..+..+.+|+.++++.|.+..                             +|..+.           
T Consensus        97 nL~~n~l~-~lP-~~~~~lknl~~LdlS~N~f~~-----------------------------~Pl~i~-----------  134 (1081)
T KOG0618|consen   97 NLKNNRLQ-SLP-ASISELKNLQYLDLSFNHFGP-----------------------------IPLVIE-----------  134 (1081)
T ss_pred             eeccchhh-cCc-hhHHhhhcccccccchhccCC-----------------------------CchhHH-----------
Confidence            66666543 111 123334444444444443321                             222222           


Q ss_pred             cccCCCCCChhhhhcCCCCcEEEccCCCCcCCCcCCCCCCCCcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccc
Q 001313          522 HIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDG  601 (1102)
Q Consensus       522 ~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~  601 (1102)
                                    .++.+.++..++|.......    . ...+.+++..|.+.+.++.++.. +..  .|+|.+|.+. 
T Consensus       135 --------------~lt~~~~~~~s~N~~~~~lg----~-~~ik~~~l~~n~l~~~~~~~i~~-l~~--~ldLr~N~~~-  191 (1081)
T KOG0618|consen  135 --------------VLTAEEELAASNNEKIQRLG----Q-TSIKKLDLRLNVLGGSFLIDIYN-LTH--QLDLRYNEME-  191 (1081)
T ss_pred             --------------hhhHHHHHhhhcchhhhhhc----c-ccchhhhhhhhhcccchhcchhh-hhe--eeecccchhh-
Confidence                          34444444555541111000    0 11556666666666666665543 333  4777777765 


Q ss_pred             cCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccCccCcccCCCCcC
Q 001313          602 SIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLS  681 (1102)
Q Consensus       602 ~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  681 (1102)
                        -..+..+.+|+.+....|++. .+-.    .-++|+.|+.++|.++...+.  ....+|++++++.|+++ .+|.+++
T Consensus       192 --~~dls~~~~l~~l~c~rn~ls-~l~~----~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~  261 (1081)
T KOG0618|consen  192 --VLDLSNLANLEVLHCERNQLS-ELEI----SGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIG  261 (1081)
T ss_pred             --hhhhhhccchhhhhhhhcccc-eEEe----cCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHH
Confidence              123456667777777777665 3221    235677777777777633322  23456777777777776 4457777


Q ss_pred             CCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCC-CC--Ccccc
Q 001313          682 KCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSC-YD--FVCIE  758 (1102)
Q Consensus       682 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~-~~--~~~L~  758 (1102)
                      .+.+|+.++..+|+++ .+|..+...++|+.|.+..|.+. -+|......+.|++|||..|++.. +|+. +.  ..++.
T Consensus       262 ~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~-lp~~~l~v~~~~l~  338 (1081)
T KOG0618|consen  262 ACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPS-LPDNFLAVLNASLN  338 (1081)
T ss_pred             hcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccc-cchHHHhhhhHHHH
Confidence            7777777777777775 66666667777777777777776 345555667777777777777753 3332 21  23456


Q ss_pred             EEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCc
Q 001313          759 QVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNN  838 (1102)
Q Consensus       759 ~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N  838 (1102)
                      .++.+.|++.. .|...=...+.|+.|.+.+|++++..-..+.+...|+.|+|++|++.......+.++..|+.|+||+|
T Consensus       339 ~ln~s~n~l~~-lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGN  417 (1081)
T KOG0618|consen  339 TLNVSSNKLST-LPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGN  417 (1081)
T ss_pred             HHhhhhccccc-cccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccc
Confidence            66666666652 33322234566777888888887776667777778888888888777444455677777788888888


Q ss_pred             cCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCC
Q 001313          839 NLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLI  918 (1102)
Q Consensus       839 ~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~  918 (1102)
                      +++ .+|.+..++.                                                     .|++|..-+|++.
T Consensus       418 kL~-~Lp~tva~~~-----------------------------------------------------~L~tL~ahsN~l~  443 (1081)
T KOG0618|consen  418 KLT-TLPDTVANLG-----------------------------------------------------RLHTLRAHSNQLL  443 (1081)
T ss_pred             hhh-hhhHHHHhhh-----------------------------------------------------hhHHHhhcCCcee
Confidence            776 4455554443                                                     4566667777776


Q ss_pred             CCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccC
Q 001313          919 GHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYN  987 (1102)
Q Consensus       919 ~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N  987 (1102)
                       ..| ++..++.|+++|+|.|+|+...-..-..-++|++|||++|.=.-..-..|..+.++..+++.-|
T Consensus       444 -~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  444 -SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             -ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence             455 7778888888888888887533222222377888888888733244556666666766766666

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=9.6e-32  Score=288.59  Aligned_cols=365  Identities=25%  Similarity=0.369  Sum_probs=242.1

Q ss_pred             CCCcCEEEccCCcCC-CCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCc
Q 001313          561 HKQLRLLDVSKNNFQ-GHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLR  639 (1102)
Q Consensus       561 ~~~L~~L~ls~n~l~-~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~  639 (1102)
                      ++-.+-+|+++|.++ +..|..+-. ++.++.|.|...++. .+|+.++.+.+|++|.+++|++. .+-..+ ..++.|+
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~q-Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGEL-s~Lp~LR   81 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQ-MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGEL-SDLPRLR   81 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHH-hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhh-ccchhhH
Confidence            455667788888887 456666655 677777777777776 67777777777777888777776 444444 3567777


Q ss_pred             EEEccccccCC-cccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCC
Q 001313          640 SLALSNNNLEG-HMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKN  718 (1102)
Q Consensus       640 ~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n  718 (1102)
                      .+.+.+|++.. -+|..+..+..|+.|||+.|++. ..|..+..-+++-+|+|++|+|..+....|.+++.|-.|||++|
T Consensus        82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N  160 (1255)
T KOG0444|consen   82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN  160 (1255)
T ss_pred             HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence            77777777642 34555666777777777777776 56666777777777777777776333344566777777777777


Q ss_pred             cccCCCcccccCCCcccEEEccCccccc-CCCCCCCCccccEEEccCcccc-cccCcccccCccCccEEEccCccCcccC
Q 001313          719 HIEGPIPLEFCQLRILQILDISDNNISG-SLPSCYDFVCIEQVHLSKNMLH-GQLKEGTFFNCLTLMILDLSYNHLNGNI  796 (1102)
Q Consensus       719 ~l~~~~~~~~~~l~~L~~L~ls~n~l~~-~~p~~~~~~~L~~L~l~~n~l~-~~i~~~~~~~~~~L~~L~Ls~n~l~~~~  796 (1102)
                      ++. .+|..+..+..|++|+|++|.+.- .+.....+++|+.|++++.+-+ ..+|. ++..+.+|..+|+|.|.+. ..
T Consensus       161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pt-sld~l~NL~dvDlS~N~Lp-~v  237 (1255)
T KOG0444|consen  161 RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPT-SLDDLHNLRDVDLSENNLP-IV  237 (1255)
T ss_pred             hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCC-chhhhhhhhhccccccCCC-cc
Confidence            776 455566677777777777776542 1111223456666666665432 23555 6666677777777777766 56


Q ss_pred             CccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCc
Q 001313          797 PDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGM  876 (1102)
Q Consensus       797 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  876 (1102)
                      |+.+..+++|+.|+||+|+++ ..........+|++|++|.|+++ ..|+++..++                        
T Consensus       238 Pecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~------------------------  291 (1255)
T KOG0444|consen  238 PECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLT------------------------  291 (1255)
T ss_pred             hHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhH------------------------
Confidence            677777777777777777776 44444555566777777777776 5565554443                        


Q ss_pred             cCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCC-CCcccccCCCcCCEEECCCCCCCCCCcccccCCCcC
Q 001313          877 DVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIG-HIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNI  955 (1102)
Q Consensus       877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~-~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  955 (1102)
                                                   .|+.|.+.+|+++- -||..|+.|.+|+++..++|.+. ..|+.+..+..|
T Consensus       292 -----------------------------kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL  341 (1255)
T KOG0444|consen  292 -----------------------------KLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKL  341 (1255)
T ss_pred             -----------------------------HHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHH
Confidence                                         45666666666652 46777777777777777777776 677777777777


Q ss_pred             CEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCc
Q 001313          956 ESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLS  990 (1102)
Q Consensus       956 ~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~  990 (1102)
                      +.|.|++|+|- ..|..+.-++.|.+||+..|+=-
T Consensus       342 ~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  342 QKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             HHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence            77777777776 56777777777777777777533

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=1.3e-31  Score=287.52  Aligned_cols=247  Identities=26%  Similarity=0.336  Sum_probs=109.9

Q ss_pred             CcEEEccCCccc-ccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeec
Q 001313          589 LTVFNISMNALD-GSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQL  667 (1102)
Q Consensus       589 L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  667 (1102)
                      ++-.|+++|.++ +..|.....++.++.|.|...++. .+|+.+. .+.+|++|.+++|++..+ ...+..++.|+.+.+
T Consensus         9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~-~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRsv~~   85 (1255)
T KOG0444|consen    9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELS-RLQKLEHLSMAHNQLISV-HGELSDLPRLRSVIV   85 (1255)
T ss_pred             eecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHH-HHhhhhhhhhhhhhhHhh-hhhhccchhhHHHhh
Confidence            344444444444 234444444444455554444444 4444442 344445555554444322 222334444444444


Q ss_pred             cCccCc-ccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCccccc
Q 001313          668 EGNHFV-GEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISG  746 (1102)
Q Consensus       668 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~  746 (1102)
                      .+|++. .-+|..+..+..|+.|||++|++. ..|..+....++..|+|++|+|..+...-|.+++.|-.||||+|++..
T Consensus        86 R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~  164 (1255)
T KOG0444|consen   86 RDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEM  164 (1255)
T ss_pred             hccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhh
Confidence            444442 123444444444445555555444 444444444444445555554443222333444444444555554443


Q ss_pred             CCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCc-ccCCccccCCCCCCEEEccCccccccCchhhc
Q 001313          747 SLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLN-GNIPDRVDGLSQLSYLILAHNNLEGEVPIQLC  825 (1102)
Q Consensus       747 ~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~  825 (1102)
                      ..|..-.+..|++|.|++|.+.-. .-..+..+++|+.|.+++.+-+ ..+|..+..+.+|..+|+|.|.+. ..|..+.
T Consensus       165 LPPQ~RRL~~LqtL~Ls~NPL~hf-QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly  242 (1255)
T KOG0444|consen  165 LPPQIRRLSMLQTLKLSNNPLNHF-QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLY  242 (1255)
T ss_pred             cCHHHHHHhhhhhhhcCCChhhHH-HHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHh
Confidence            333333444444445544444311 1112223444444444443221 234444444444555555555444 4444444


Q ss_pred             CCCCCCEEECcCccCC
Q 001313          826 RLNQLQLLDLSNNNLH  841 (1102)
Q Consensus       826 ~l~~L~~L~Ls~N~l~  841 (1102)
                      ++++|+.|+||+|+|+
T Consensus       243 ~l~~LrrLNLS~N~it  258 (1255)
T KOG0444|consen  243 KLRNLRRLNLSGNKIT  258 (1255)
T ss_pred             hhhhhheeccCcCcee
Confidence            4455555555554443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.93  E-value=4e-28  Score=248.98  Aligned_cols=291  Identities=21%  Similarity=0.228  Sum_probs=201.2

Q ss_pred             CCCCcCCCcCCCCCCCCcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEEccC-ccccc
Q 001313          547 NDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSN-NQLTG  625 (1102)
Q Consensus       547 ~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~  625 (1102)
                      +|...|....+-.-.+.-..++|..|.|+ .||+..|..+++|+.|||++|+|+.+.|++|.++++|..|-+.+ |+|+ 
T Consensus        52 dCr~~GL~eVP~~LP~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-  129 (498)
T KOG4237|consen   52 DCRGKGLTEVPANLPPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-  129 (498)
T ss_pred             EccCCCcccCcccCCCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-
Confidence            44555555555556677889999999998 99999999999999999999999999999999999988887766 9998 


Q ss_pred             ccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCC-------
Q 001313          626 EIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSG-------  698 (1102)
Q Consensus       626 ~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------  698 (1102)
                      .+|...|.++.+|+.|.+.-|++..+..+.|..+++|..|.+.+|.+..+-..+|..+.+++.+.+..|.+..       
T Consensus       130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wl  209 (498)
T KOG4237|consen  130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWL  209 (498)
T ss_pred             hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchh
Confidence            9999999999999999999999999999999999999999999999986666699999999999999887431       


Q ss_pred             -----CCCccccCCCCccEEECCCCcccCCCcccccCC-CcccEEEccCcccccCCCC-CC-CCccccEEEccCcccccc
Q 001313          699 -----KIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQL-RILQILDISDNNISGSLPS-CY-DFVCIEQVHLSKNMLHGQ  770 (1102)
Q Consensus       699 -----~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~ls~n~l~~~~p~-~~-~~~~L~~L~l~~n~l~~~  770 (1102)
                           ..|-.++...-..-..+.++++..+.+..|... ..+..--.+.+...+.-|. ++ .+++|+.+++++|++++ 
T Consensus       210 a~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~-  288 (498)
T KOG4237|consen  210 ADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR-  288 (498)
T ss_pred             hhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch-
Confidence                 222223333222223333333332222222111 1111101111112222221 11 34555555555555553 


Q ss_pred             cCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccC
Q 001313          771 LKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNL  840 (1102)
Q Consensus       771 i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  840 (1102)
                      |.+++|.....+++|.|..|++.......|.++..|+.|+|.+|+|+..-|.+|..+.+|.+|.|-.|++
T Consensus       289 i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  289 IEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             hhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence            4444666666677777777766665556666667777777777777766666676667777777666665

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.90  E-value=3.5e-26  Score=234.77  Aligned_cols=410  Identities=20%  Similarity=0.215  Sum_probs=278.3

Q ss_pred             EEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccc
Q 001313          566 LLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSN  645 (1102)
Q Consensus       566 ~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~  645 (1102)
                      .+|-++-.++ ++|..+   .+.-.++.|..|+|+.+.|.+|+.+++|+.||||+|+|+ .|.+..|.++.+|..|-+.+
T Consensus        50 ~VdCr~~GL~-eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg  124 (498)
T KOG4237|consen   50 IVDCRGKGLT-EVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYG  124 (498)
T ss_pred             eEEccCCCcc-cCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhc
Confidence            5666776776 788876   567889999999999999999999999999999999999 88888889999988877766


Q ss_pred             -cccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccC--
Q 001313          646 -NNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEG--  722 (1102)
Q Consensus       646 -n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~--  722 (1102)
                       |+|+......|.++..|+.|.+.-|++.....+.|..++++..|.+.+|.+....-..|..+..++.+.+..|.+..  
T Consensus       125 ~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdC  204 (498)
T KOG4237|consen  125 NNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDC  204 (498)
T ss_pred             CCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccc
Confidence             99999999999999999999999999998888899999999999999999984444588899999999999887431  


Q ss_pred             ----------CCcccccCCCcccEEEccCcccccCCCCCCCCc--cccEEEccCcccccccCcccccCccCccEEEccCc
Q 001313          723 ----------PIPLEFCQLRILQILDISDNNISGSLPSCYDFV--CIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYN  790 (1102)
Q Consensus       723 ----------~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~--~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n  790 (1102)
                                ..|..++...-..-..+.++++...-+..+.+.  ++.+-..+.+...+..|...|..+++|+.|+|++|
T Consensus       205 nL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN  284 (498)
T KOG4237|consen  205 NLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN  284 (498)
T ss_pred             ccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC
Confidence                      111122222222222233333332222222222  22222233444566778888999999999999999


Q ss_pred             cCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCC-CCCC----
Q 001313          791 HLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGS-SLQP----  865 (1102)
Q Consensus       791 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~-~~~~----  865 (1102)
                      +++++-+.+|.++..++.|.|..|++...-...|.++..|++|+|.+|+|+...|..|.........+... .+..    
T Consensus       285 ~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l  364 (498)
T KOG4237|consen  285 KITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRL  364 (498)
T ss_pred             ccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccch
Confidence            99999999999999999999999999977788899999999999999999999999887665332222111 1100    


Q ss_pred             cc-chhhhcCC---ccCCcc-----ccccceee---eeccceeee---ccCCcCC---CC-ceEECCCCCCCCCCccccc
Q 001313          866 FE-TSFVIMGG---MDVDPK-----KQILESFD---FTTKSITYT---YQGRVPS---LL-SGLDLSCNRLIGHIPPQIG  926 (1102)
Q Consensus       866 ~~-~~~~~~~~---~~~~~~-----~~~~~~~~---~~~~~~~~~---~~~~~~~---~L-~~L~Ls~N~l~~~ip~~~~  926 (1102)
                      .. .....-.+   .+....     ....+.+.   +...+.+..   ....-|+   -+ +...-|+..+. .+|.-+.
T Consensus       365 ~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP  443 (498)
T KOG4237|consen  365 AWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP  443 (498)
T ss_pred             HHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC
Confidence            00 00000001   000000     00001010   000000000   0000010   01 11223333332 3343332


Q ss_pred             CCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccC
Q 001313          927 NLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYN  987 (1102)
Q Consensus       927 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N  987 (1102)
                        ...++|++.+|.++ .+|..  .+.+| .+|+|+|+++...-..|.+++.|.+|-++||
T Consensus       444 --~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  444 --VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             --chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence              34567788888888 56665  56677 7888888888777777888888888888876

>PLN03210 Resistant to P

Probab=99.89  E-value=7.1e-22  Score=253.65  Aligned_cols=309  Identities=21%  Similarity=0.243  Sum_probs=183.4

Q ss_pred             CCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeee
Q 001313          587 SRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQ  666 (1102)
Q Consensus       587 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  666 (1102)
                      ++|+.|.+.++.+. .+|..| ...+|+.|++++|++. .++... ..+++|+.|+++++.....+|. +..+++|++|+
T Consensus       589 ~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~  663 (1153)
T PLN03210        589 PKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGV-HSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLK  663 (1153)
T ss_pred             cccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccccc-ccCCCCCEEECCCCCCcCcCCc-cccCCcccEEE
Confidence            34555555555444 344444 2445555555555554 444433 2445555555555443333332 44455555555


Q ss_pred             ccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCccccc
Q 001313          667 LEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISG  746 (1102)
Q Consensus       667 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~  746 (1102)
                      +++|.....+|..+..+++|+.|++++|...+.+|..+ ++++|+.|++++|...+.+|..   .++|+.|++++|.+. 
T Consensus       664 L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-  738 (1153)
T PLN03210        664 LSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-  738 (1153)
T ss_pred             ecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-
Confidence            55555444555555555566666665554334455443 4555666666655443334422   245556666666554 


Q ss_pred             CCCCCCCCccccEEEccCcccc---c---ccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccC
Q 001313          747 SLPSCYDFVCIEQVHLSKNMLH---G---QLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEV  820 (1102)
Q Consensus       747 ~~p~~~~~~~L~~L~l~~n~l~---~---~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~  820 (1102)
                      .+|....+++|++|.+.++...   +   .++...+..+++|+.|++++|...+.+|..++++++|+.|++++|...+.+
T Consensus       739 ~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L  818 (1153)
T PLN03210        739 EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL  818 (1153)
T ss_pred             cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee
Confidence            3454445555555555543211   0   111112334567888888888777778888888888888888887655567


Q ss_pred             chhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeecc
Q 001313          821 PIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQ  900 (1102)
Q Consensus       821 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  900 (1102)
                      |..+ .+++|+.|++++|.....+|..                                                     
T Consensus       819 P~~~-~L~sL~~L~Ls~c~~L~~~p~~-----------------------------------------------------  844 (1153)
T PLN03210        819 PTGI-NLESLESLDLSGCSRLRTFPDI-----------------------------------------------------  844 (1153)
T ss_pred             CCCC-CccccCEEECCCCCcccccccc-----------------------------------------------------
Confidence            7665 6788888888887544333321                                                     


Q ss_pred             CCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCC-CCCCCCCcccccCCCcCCEEeCCCCc
Q 001313          901 GRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSH-NNLAGPIPSTFSNLRNIESLDLSYNK  964 (1102)
Q Consensus       901 ~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~  964 (1102)
                         +.+++.|+|++|.++ .+|..+..+++|++|+|++ |+++ .+|..+..+++|+.++++++.
T Consensus       845 ---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        845 ---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             ---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCCc
Confidence               125778888888887 5788888888888888887 5555 567778888888888888774

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.89  E-value=1e-21  Score=252.14  Aligned_cols=339  Identities=22%  Similarity=0.261  Sum_probs=272.4

Q ss_pred             chhhhcCCCCcEEEccCCc------ccccCCcccCCCC-CCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcc
Q 001313          580 LEIGDILSRLTVFNISMNA------LDGSIPSSFGNMN-FLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHM  652 (1102)
Q Consensus       580 ~~~~~~l~~L~~L~Ls~n~------l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~  652 (1102)
                      ...+..+++|+.|.+..+.      +...+|..|..++ +|+.|++.++.+. .+|..+  ...+|+.|++.+|++.. .
T Consensus       551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~~-L  626 (1153)
T PLN03210        551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLEK-L  626 (1153)
T ss_pred             HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCccccc-c
Confidence            3444457888888876553      3335677777764 5999999999998 889876  57899999999999875 4


Q ss_pred             cccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCC
Q 001313          653 FSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLR  732 (1102)
Q Consensus       653 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  732 (1102)
                      +..+..+++|+.|+++++...+.+| .+..+++|++|++++|.....+|..++++++|+.|++++|...+.+|..+ +++
T Consensus       627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~  704 (1153)
T PLN03210        627 WDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLK  704 (1153)
T ss_pred             ccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCC
Confidence            5667889999999999987666676 47889999999999998777899999999999999999986656777665 789


Q ss_pred             cccEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCc-------ccCCccccCCCC
Q 001313          733 ILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLN-------GNIPDRVDGLSQ  805 (1102)
Q Consensus       733 ~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~-------~~~p~~~~~l~~  805 (1102)
                      +|+.|++++|...+.+|..  ..+|+.|++++|.+. .+|. .+ .+++|+.|++.++...       ...|..+...++
T Consensus       705 sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~-~lP~-~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~s  779 (1153)
T PLN03210        705 SLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIE-EFPS-NL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPS  779 (1153)
T ss_pred             CCCEEeCCCCCCccccccc--cCCcCeeecCCCccc-cccc-cc-cccccccccccccchhhccccccccchhhhhcccc
Confidence            9999999999877777754  468999999999986 5776 33 5788999988874422       122223334578


Q ss_pred             CCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCcccccc
Q 001313          806 LSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQIL  885 (1102)
Q Consensus       806 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  885 (1102)
                      |+.|+|++|...+.+|..+.++++|+.|++++|...+.+|... +                                   
T Consensus       780 L~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~-----------------------------------  823 (1153)
T PLN03210        780 LTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-N-----------------------------------  823 (1153)
T ss_pred             chheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-C-----------------------------------
Confidence            9999999999888999999999999999999987655666543 1                                   


Q ss_pred             ceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCC-Cc
Q 001313          886 ESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSY-NK  964 (1102)
Q Consensus       886 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~-N~  964 (1102)
                                        ++.|+.|+|++|.....+|..   .++|+.|+|++|.++ .+|..+..+++|+.|+|++ |+
T Consensus       824 ------------------L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~  881 (1153)
T PLN03210        824 ------------------LESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNN  881 (1153)
T ss_pred             ------------------ccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCC
Confidence                              226899999998776667754   368999999999999 6899999999999999998 56


Q ss_pred             CcccCchhhhcCCCCCEEEcccCc
Q 001313          965 LSWKIPYQLVELNTLAVFSVAYNN  988 (1102)
Q Consensus       965 l~~~~p~~l~~l~~L~~l~ls~N~  988 (1102)
                      |. .+|..+..++.|+.++++++.
T Consensus       882 L~-~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        882 LQ-RVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             cC-ccCcccccccCCCeeecCCCc
Confidence            66 578888899999999999874

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=2.8e-21  Score=228.33  Aligned_cols=265  Identities=26%  Similarity=0.327  Sum_probs=132.6

Q ss_pred             CCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeec
Q 001313          588 RLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQL  667 (1102)
Q Consensus       588 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  667 (1102)
                      .-..|+++.|.++ .+|..+.  ++|+.|++++|+++ .+|.    .+++|++|++++|+++.+ |.   ..++|+.|++
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~L  269 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL-PV---LPPGLLELSI  269 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcc-cC---cccccceeec
Confidence            3556777777776 4565553  35677777777776 5553    235555555555555533 21   1234444444


Q ss_pred             cCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccC
Q 001313          668 EGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGS  747 (1102)
Q Consensus       668 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~  747 (1102)
                      ++|.++                         .+|..+   ++|+.|++++|+++. +|.   ..++|+.|++++|++++ 
T Consensus       270 s~N~L~-------------------------~Lp~lp---~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-  316 (788)
T PRK15387        270 FSNPLT-------------------------HLPALP---SGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-  316 (788)
T ss_pred             cCCchh-------------------------hhhhch---hhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-
Confidence            444443                         222211   234444444444442 222   12345555555555543 


Q ss_pred             CCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCC
Q 001313          748 LPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRL  827 (1102)
Q Consensus       748 ~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l  827 (1102)
                      +|..  ..+|+.|++++|++++ +|.  +  ..+|+.|+|++|++++ +|..   ..+|+.|++++|++++ +|..   .
T Consensus       317 Lp~l--p~~L~~L~Ls~N~L~~-LP~--l--p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~  381 (788)
T PRK15387        317 LPAL--PSELCKLWAYNNQLTS-LPT--L--PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---P  381 (788)
T ss_pred             CCCC--cccccccccccCcccc-ccc--c--ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---c
Confidence            2221  1234444444444432 332  1  1356666666666663 3332   2345566666666663 4432   2


Q ss_pred             CCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCC
Q 001313          828 NQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLL  907 (1102)
Q Consensus       828 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  907 (1102)
                      .+|+.|++++|++++ +|..                                                        ++.|
T Consensus       382 ~~L~~LdLs~N~Lt~-LP~l--------------------------------------------------------~s~L  404 (788)
T PRK15387        382 SGLKELIVSGNRLTS-LPVL--------------------------------------------------------PSEL  404 (788)
T ss_pred             cccceEEecCCcccC-CCCc--------------------------------------------------------ccCC
Confidence            355666666666553 2211                                                        1135


Q ss_pred             ceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhh
Q 001313          908 SGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLV  974 (1102)
Q Consensus       908 ~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~  974 (1102)
                      +.|++++|++++ +|...   .+|+.|+|++|+|+ .+|..|.++++|+.|+|++|+|+|.+|..+.
T Consensus       405 ~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~  466 (788)
T PRK15387        405 KELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR  466 (788)
T ss_pred             CEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHH
Confidence            556666666653 44322   34555666666665 4566666666666666666666666555553

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.85  E-value=1e-20  Score=223.70  Aligned_cols=267  Identities=27%  Similarity=0.322  Sum_probs=196.0

Q ss_pred             CcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEE
Q 001313          563 QLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLA  642 (1102)
Q Consensus       563 ~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~  642 (1102)
                      .-..|+++.+.++ .+|..+.   ++|+.|++++|+++. +|..   .++|++|++++|+++ .+|..    .++|+.|+
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~l---p~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L~  268 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPAL---PPELRTLEVSGNQLT-SLPVL----PPGLLELS  268 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCCC---CCCCcEEEecCCccC-cccCc----ccccceee
Confidence            3568999999998 7998774   589999999999994 5642   588999999999999 78852    47899999


Q ss_pred             ccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccC
Q 001313          643 LSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEG  722 (1102)
Q Consensus       643 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  722 (1102)
                      +++|.++... .   ...+|+.|++++|+++. +|..   .++|+.|++++|++++ +|...   .+|+.|++++|++++
T Consensus       269 Ls~N~L~~Lp-~---lp~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~-Lp~lp---~~L~~L~Ls~N~L~~  336 (788)
T PRK15387        269 IFSNPLTHLP-A---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPALP---SELCKLWAYNNQLTS  336 (788)
T ss_pred             ccCCchhhhh-h---chhhcCEEECcCCcccc-cccc---ccccceeECCCCcccc-CCCCc---ccccccccccCcccc
Confidence            9999988543 2   23578889999999884 4542   4678899999998884 45422   357777888888764


Q ss_pred             CCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccC
Q 001313          723 PIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDG  802 (1102)
Q Consensus       723 ~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~  802 (1102)
                       +|..   ..+|+.|++++|++++                        +|. .   ..+|+.|++++|++++ +|..   
T Consensus       337 -LP~l---p~~Lq~LdLS~N~Ls~------------------------LP~-l---p~~L~~L~Ls~N~L~~-LP~l---  380 (788)
T PRK15387        337 -LPTL---PSGLQELSVSDNQLAS------------------------LPT-L---PSELYKLWAYNNRLTS-LPAL---  380 (788)
T ss_pred             -cccc---ccccceEecCCCccCC------------------------CCC-C---Ccccceehhhcccccc-Cccc---
Confidence             4431   1367777777777663                        332 1   1346667777777764 4543   


Q ss_pred             CCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccc
Q 001313          803 LSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKK  882 (1102)
Q Consensus       803 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  882 (1102)
                      ..+|+.|++++|++++ +|..   .++|+.|++++|++++ +|...                                  
T Consensus       381 ~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l~----------------------------------  421 (788)
T PRK15387        381 PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPMLP----------------------------------  421 (788)
T ss_pred             ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcch----------------------------------
Confidence            2467788888888874 5533   3578888999988874 45321                                  


Q ss_pred             cccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCC
Q 001313          883 QILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNL  952 (1102)
Q Consensus       883 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  952 (1102)
                                            ..|+.|+|++|+++ .+|..|.++++|+.|+|++|.|++.+|..+..+
T Consensus       422 ----------------------~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l  468 (788)
T PRK15387        422 ----------------------SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI  468 (788)
T ss_pred             ----------------------hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence                                  14667899999998 689999999999999999999999888877443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.77  E-value=9.3e-19  Score=208.95  Aligned_cols=116  Identities=27%  Similarity=0.330  Sum_probs=53.0

Q ss_pred             CEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEcc
Q 001313          565 RLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALS  644 (1102)
Q Consensus       565 ~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~  644 (1102)
                      ..|+++++.++ .+|..+   .+.|+.|++++|+++ .+|..+.  ++|++|++++|+++ .+|..+.   .+|+.|+++
T Consensus       181 ~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls  249 (754)
T PRK15370        181 TELRLKILGLT-TIPACI---PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEMELS  249 (754)
T ss_pred             eEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh---ccccEEECc
Confidence            44555555554 444433   234555566655555 2333332  35566666666555 4554432   245555555


Q ss_pred             ccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCC
Q 001313          645 NNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLS  697 (1102)
Q Consensus       645 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  697 (1102)
                      +|++..+ |..+  ..+|+.|++++|+++ .+|..+.  ++|+.|++++|+++
T Consensus       250 ~N~L~~L-P~~l--~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt  296 (754)
T PRK15370        250 INRITEL-PERL--PSALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR  296 (754)
T ss_pred             CCccCcC-ChhH--hCCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc
Confidence            5554422 2221  123444444444444 2333221  24444444444444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.77  E-value=9.7e-19  Score=208.82  Aligned_cols=119  Identities=28%  Similarity=0.369  Sum_probs=65.6

Q ss_pred             CCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeee
Q 001313          587 SRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQ  666 (1102)
Q Consensus       587 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  666 (1102)
                      .+...|+++++.++ .+|..+.  +.|+.|++++|+++ .+|...+   .+|+.|++++|+++.. |..+  .++|+.|+
T Consensus       178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~LtsL-P~~l--~~~L~~L~  247 (754)
T PRK15370        178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTSI-PATL--PDTIQEME  247 (754)
T ss_pred             cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccccC-Chhh--hccccEEE
Confidence            45677888887777 4555442  46788888888887 6776553   4677777777766643 3222  13455555


Q ss_pred             ccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCccc
Q 001313          667 LEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIE  721 (1102)
Q Consensus       667 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~  721 (1102)
                      +++|.+. .+|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|++++|+++
T Consensus       248 Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt  296 (754)
T PRK15370        248 LSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR  296 (754)
T ss_pred             CcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc
Confidence            5555554 3343332  24555555555554 2343322  24444444444444

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.68  E-value=2.4e-18  Score=192.69  Aligned_cols=66  Identities=27%  Similarity=0.356  Sum_probs=31.5

Q ss_pred             ccCccCccEEEccCccCccc----CCccccCCCCCCEEEccCccccccC----chhhcCCCCCCEEECcCccCC
Q 001313          776 FFNCLTLMILDLSYNHLNGN----IPDRVDGLSQLSYLILAHNNLEGEV----PIQLCRLNQLQLLDLSNNNLH  841 (1102)
Q Consensus       776 ~~~~~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~----p~~~~~l~~L~~L~Ls~N~l~  841 (1102)
                      +..+++|++|++++|.+++.    ++..+..+++|+.|++++|.+++..    +..+..+++|++|++++|+++
T Consensus       161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence            33444555555555555421    1222333445555555555554222    223344555555555555544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.64  E-value=3.4e-16  Score=175.37  Aligned_cols=172  Identities=26%  Similarity=0.259  Sum_probs=93.2

Q ss_pred             cCCCCCCCCEEeCCCCCCCCcccchhhhhhcCCCCCcEEeCCCCcCC------cchhHhhhcCCCcCEEEcCCCcccCCC
Q 001313           96 LFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFN------NSILSSLARLSSLTSLDLSANRLKGSI  169 (1102)
Q Consensus        96 ~~~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~------~~~~~~l~~l~~L~~L~Ls~n~l~~~~  169 (1102)
                      .|..++.|++|+++++.++........+.+...++|++|+++++.+.      ..++..+.++++|+.|++++|.+.+. 
T Consensus        18 ~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-   96 (319)
T cd00116          18 LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD-   96 (319)
T ss_pred             HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh-
Confidence            34555667777777777654322222334556667777777776655      23445566677777777777766532 


Q ss_pred             ChhhhccCCC---CcEEEcCCCcCCcccccCCccccCCC-CCcCEEEcCCCcCCh----hhhHhhhccCCCcEEEccCCc
Q 001313          170 DIKELDSLRD---LEKLNIGRNMIDKFVVSKGPKRLSRL-NNLKVFDLSGNLFNN----SILSSLARLSSLRSLLLYDNR  241 (1102)
Q Consensus       170 ~~~~l~~l~~---L~~L~Ls~n~~~~~~~~~~~~~l~~l-~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~L~~n~  241 (1102)
                      .+..+..+.+   |++|++++|.+.+.........+..+ ++|++|++++|.+++    .++..+..+++|++|++++|.
T Consensus        97 ~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~  176 (319)
T cd00116          97 GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG  176 (319)
T ss_pred             HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC
Confidence            2333433333   66677766666532221112334445 666666666666653    223344455566666666666


Q ss_pred             CCCCCch---hhccCCCCCcEEecccCccC
Q 001313          242 LEGSIDV---KEFDSLSNLEELDMSYNEID  268 (1102)
Q Consensus       242 l~~~~~~---~~l~~l~~L~~L~L~~n~l~  268 (1102)
                      +.+....   ..+..+++|++|++++|.+.
T Consensus       177 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  206 (319)
T cd00116         177 IGDAGIRALAEGLKANCNLEVLDLNNNGLT  206 (319)
T ss_pred             CchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence            5431110   12333446666666666554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.63  E-value=1.2e-17  Score=152.24  Aligned_cols=166  Identities=30%  Similarity=0.499  Sum_probs=121.8

Q ss_pred             CCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCC
Q 001313          751 CYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQL  830 (1102)
Q Consensus       751 ~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  830 (1102)
                      .+....++.|.+++|+++ .+|+ .+..+.+|+.|++++|+++ .+|..++.++.|+.|+++-|++. ..|..|+.++.|
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vpp-nia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l  104 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPP-NIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL  104 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCC-cHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence            334445555555555555 4566 6778888888888888887 57788888888888888888887 788888888888


Q ss_pred             CEEECcCccCCC-CCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCce
Q 001313          831 QLLDLSNNNLHG-HIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSG  909 (1102)
Q Consensus       831 ~~L~Ls~N~l~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  909 (1102)
                      +.|||.+|++.. ..|..|..++                                                     .|+.
T Consensus       105 evldltynnl~e~~lpgnff~m~-----------------------------------------------------tlra  131 (264)
T KOG0617|consen  105 EVLDLTYNNLNENSLPGNFFYMT-----------------------------------------------------TLRA  131 (264)
T ss_pred             hhhhccccccccccCCcchhHHH-----------------------------------------------------HHHH
Confidence            888888888763 2444433222                                                     3566


Q ss_pred             EECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcC
Q 001313          910 LDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVEL  976 (1102)
Q Consensus       910 L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  976 (1102)
                      |+|+.|.+. .+|..++++++|+.|.+..|.+- ..|..++.++.|+.|.+.+|+++ .+|..++++
T Consensus       132 lyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l  195 (264)
T KOG0617|consen  132 LYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANL  195 (264)
T ss_pred             HHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhh
Confidence            777788776 67777888888888888888777 67777888888888888888887 566666554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.61  E-value=1.3e-17  Score=152.06  Aligned_cols=181  Identities=29%  Similarity=0.456  Sum_probs=156.3

Q ss_pred             cccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCccccccccc
Q 001313          775 TFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLH  854 (1102)
Q Consensus       775 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~  854 (1102)
                      .+.++...+.|.||+|+++ .+|..++.+.+|+.|++++|+++ ..|.+++.++.|+.|+++-|++. ..|..|+.+.  
T Consensus        28 gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p--  102 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFP--  102 (264)
T ss_pred             cccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCc--
Confidence            3567788899999999999 67778999999999999999999 88999999999999999999986 6677776554  


Q ss_pred             ccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCC-CCcccccCCCcCCE
Q 001313          855 ERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIG-HIPPQIGNLTKIQT  933 (1102)
Q Consensus       855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~-~ip~~~~~l~~L~~  933 (1102)
                                                                         .|+.|||++|++.. ..|..|-.++.|+.
T Consensus       103 ---------------------------------------------------~levldltynnl~e~~lpgnff~m~tlra  131 (264)
T KOG0617|consen  103 ---------------------------------------------------ALEVLDLTYNNLNENSLPGNFFYMTTLRA  131 (264)
T ss_pred             ---------------------------------------------------hhhhhhccccccccccCCcchhHHHHHHH
Confidence                                                               57889999999975 68889999999999


Q ss_pred             EECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCCccccccCCCC---ccccCC
Q 001313          934 LNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFN---ESSYEG 1010 (1102)
Q Consensus       934 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~---~~~~~g 1010 (1102)
                      |.|+.|.+. .+|..++++++|+.|.+..|.+- ..|..++.++.|+.|.+.+|+++...|+ ++++.-..   ....+.
T Consensus       132 lyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppe-l~~l~l~~~k~v~r~E~  208 (264)
T KOG0617|consen  132 LYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPE-LANLDLVGNKQVMRMEE  208 (264)
T ss_pred             HHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChh-hhhhhhhhhHHHHhhhh
Confidence            999999999 88999999999999999999998 7899999999999999999999987776 66554332   233456


Q ss_pred             CCCC
Q 001313         1011 NPFL 1014 (1102)
Q Consensus      1011 N~~l 1014 (1102)
                      |||.
T Consensus       209 NPwv  212 (264)
T KOG0617|consen  209 NPWV  212 (264)
T ss_pred             CCCC
Confidence            6654

>PLN03150 hypothetical protein; Provisional

Probab=99.55  E-value=1.1e-14  Score=174.44  Aligned_cols=118  Identities=33%  Similarity=0.560  Sum_probs=106.4

Q ss_pred             CceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEccc
Q 001313          907 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAY  986 (1102)
Q Consensus       907 L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~  986 (1102)
                      ++.|+|++|.++|.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|..++++++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCcccCCccccc-cCCCCccccCCCCCCCCCCCCCCCC
Q 001313          987 NNLSGKIPERAAQ-FATFNESSYEGNPFLCGPPLPICIS 1024 (1102)
Q Consensus       987 N~l~~~~p~~~~~-~~~~~~~~~~gN~~lC~~~~~~~c~ 1024 (1102)
                      |+++|.+|..+.. +.......+.+|+.+|+.|....|.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            9999999986543 2344567789999999976544453

>PLN03150 hypothetical protein; Provisional

Probab=99.37  E-value=2.8e-12  Score=153.73  Aligned_cols=153  Identities=30%  Similarity=0.402  Sum_probs=91.9

Q ss_pred             cccccHHHHHHHHhhhhhccCCCCCCCCCCCCCCCCCCc----CcCceEecC--CCC--cEEEEEcCCCCCCcccccccc
Q 001313           24 SEGCLNHERFALLQLKLFFIDPYNYLLDWVDDEGATDCC----QWERVSCNN--TMG--RVVVLDLSQTHRGEYWYLNAS   95 (1102)
Q Consensus        24 ~~~c~~~~~~all~~k~~~~~~~~~l~~w~~~~~~~~cc----~w~gv~c~~--~~~--~v~~L~L~~~~~~~~~~~~~~   95 (1102)
                      ...+.++|.+||+++|+++.+|..  .+|.+    ..||    .|.||.|+.  ..+  +|+.|+|+++.+.|       
T Consensus       366 ~~~t~~~~~~aL~~~k~~~~~~~~--~~W~g----~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g-------  432 (623)
T PLN03150        366 ESKTLLEEVSALQTLKSSLGLPLR--FGWNG----DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRG-------  432 (623)
T ss_pred             ccccCchHHHHHHHHHHhcCCccc--CCCCC----CCCCCcccccccceeeccCCCCceEEEEEECCCCCccc-------
Confidence            445678899999999999976642  48953    4453    799999952  122  46666666654433       


Q ss_pred             cCCCCCCCCEEeCCCCCCCCcccchhhhhhcCCCCCcEEeCCCCcCCcchhHhhhcCCCcCEEEcCCCcccCCCChhhhc
Q 001313           96 LFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELD  175 (1102)
Q Consensus        96 ~~~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~  175 (1102)
                                          ..+    ..++++++|++|+|++|.+.+.+|..++++++|++|||++|++.+.+ +..++
T Consensus       433 --------------------~ip----~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~i-P~~l~  487 (623)
T PLN03150        433 --------------------FIP----NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI-PESLG  487 (623)
T ss_pred             --------------------cCC----HHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCC-chHHh
Confidence                                332    23455555666666666655555656666666666666666665543 24555


Q ss_pred             cCCCCcEEEcCCCcCCcccccCCccccCC-CCCcCEEEcCCCcC
Q 001313          176 SLRDLEKLNIGRNMIDKFVVSKGPKRLSR-LNNLKVFDLSGNLF  218 (1102)
Q Consensus       176 ~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~-l~~L~~L~Ls~n~l  218 (1102)
                      ++++|++|+|++|.+.+..|    ..++. ..++..+++.+|..
T Consensus       488 ~L~~L~~L~Ls~N~l~g~iP----~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        488 QLTSLRILNLNGNSLSGRVP----AALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             cCCCCCEEECcCCcccccCC----hHHhhccccCceEEecCCcc
Confidence            66666666666666555544    33333 23455666666643

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.18  E-value=9.1e-13  Score=143.05  Aligned_cols=155  Identities=30%  Similarity=0.484  Sum_probs=86.4

Q ss_pred             cCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCccccc
Q 001313          771 LKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN  850 (1102)
Q Consensus       771 i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  850 (1102)
                      ||. .+.++..|++|||+.|+++ .+|..+..|+ |+.|.+++|+++ .+|..++.+..|..||.+.|.+. .+|..+++
T Consensus       113 ip~-~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~  187 (722)
T KOG0532|consen  113 IPE-AICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGY  187 (722)
T ss_pred             cch-hhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhh
Confidence            444 4555555555555555555 3444444443 555556666555 45555555555555555555554 22222222


Q ss_pred             ccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCc
Q 001313          851 TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTK  930 (1102)
Q Consensus       851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~  930 (1102)
                      +.                                                     .|+.|.+..|++. ..|+++..| .
T Consensus       188 l~-----------------------------------------------------slr~l~vrRn~l~-~lp~El~~L-p  212 (722)
T KOG0532|consen  188 LT-----------------------------------------------------SLRDLNVRRNHLE-DLPEELCSL-P  212 (722)
T ss_pred             HH-----------------------------------------------------HHHHHHHhhhhhh-hCCHHHhCC-c
Confidence            21                                                     2344445555554 345555544 3


Q ss_pred             CCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhh---cCCCCCEEEcccC
Q 001313          931 IQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLV---ELNTLAVFSVAYN  987 (1102)
Q Consensus       931 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~l~ls~N  987 (1102)
                      |..||+|+|+++ .||-.|.+|+.|++|-|.+|.|+ ..|..+.   ...-.++|+..-.
T Consensus       213 Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  213 LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence            677888888887 77777888888888888888887 4455443   2344456665544

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.15  E-value=3.1e-11  Score=124.25  Aligned_cols=238  Identities=27%  Similarity=0.361  Sum_probs=114.0

Q ss_pred             CCCCCCCCEEeCCCCCCCCcccchhhhhhcCCCCCcEEeCCCCc---CCcchhH-------hhhcCCCcCEEEcCCCccc
Q 001313           97 FTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNL---FNNSILS-------SLARLSSLTSLDLSANRLK  166 (1102)
Q Consensus        97 ~~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~---~~~~~~~-------~l~~l~~L~~L~Ls~n~l~  166 (1102)
                      ...+..++.++|++|.+.........+.+.+.++||..++|+-.   ....+|+       ++..+++|++||||.|.+.
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G  105 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG  105 (382)
T ss_pred             hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence            34566677777777776433332333456667777777777532   1223333       3445567777777777664


Q ss_pred             CCCChh----hhccCCCCcEEEcCCCcCCcccccCCccccCCCCCcCEEEcCCCcCChhhhHhhhccCCCcEEEccCCcC
Q 001313          167 GSIDIK----ELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRL  242 (1102)
Q Consensus       167 ~~~~~~----~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l  242 (1102)
                      .. .++    -+.++..|++|.|.+|.+......    .++.  .|.+|.         .....+.-++|+++..++|++
T Consensus       106 ~~-g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~----~l~~--al~~l~---------~~kk~~~~~~Lrv~i~~rNrl  169 (382)
T KOG1909|consen  106 PK-GIRGLEELLSSCTDLEELYLNNCGLGPEAGG----RLGR--ALFELA---------VNKKAASKPKLRVFICGRNRL  169 (382)
T ss_pred             cc-chHHHHHHHHhccCHHHHhhhcCCCChhHHH----HHHH--HHHHHH---------HHhccCCCcceEEEEeecccc
Confidence            22 122    224455566666665554432210    1000  000000         011123345666666666665


Q ss_pred             CCCCc---hhhccCCCCCcEEecccCccCCcchhhhhccccccceeccccccccCchhhhhhcCCCCCCCEEeCCCCCcc
Q 001313          243 EGSID---VKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFT  319 (1102)
Q Consensus       243 ~~~~~---~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~  319 (1102)
                      ...-.   ...|...+.|+++.++.|.|....                       ...+...+..+|+|++|||.+|-++
T Consensus       170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG-----------------------~~al~eal~~~~~LevLdl~DNtft  226 (382)
T KOG1909|consen  170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEG-----------------------VTALAEALEHCPHLEVLDLRDNTFT  226 (382)
T ss_pred             ccccHHHHHHHHHhccccceEEEecccccCch-----------------------hHHHHHHHHhCCcceeeecccchhh
Confidence            32111   224556667777777776654221                       1233455666677777777776654


Q ss_pred             cc-ccccccccccccccceeecccchhhhchh--hHHHhhccCCCCcEEecccCcCc
Q 001313          320 ET-VTTTTQGFPHFKSLKELYMDDARIALNTS--FLQIIGESMPSIQYLSLSNSSVS  373 (1102)
Q Consensus       320 ~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~l~~L~~L~L~~~~~~  373 (1102)
                      .. .......++.++.|+++++++|.+...|.  +...+....|+|++|.+.+|.++
T Consensus       227 ~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  227 LEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             hHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence            32 11222233334444444444443332222  22333333444555555444443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.12  E-value=1.6e-12  Score=141.10  Aligned_cols=177  Identities=32%  Similarity=0.485  Sum_probs=143.3

Q ss_pred             CCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCE
Q 001313          753 DFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQL  832 (1102)
Q Consensus       753 ~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  832 (1102)
                      +++--...+++.|++. .+|. .+..+..|+.+.|..|.+. .+|..+.++..|.+|+|+.|+++ ..|..++.|+ |+.
T Consensus        73 ~ltdt~~aDlsrNR~~-elp~-~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkv  147 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFS-ELPE-EACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKV  147 (722)
T ss_pred             cccchhhhhccccccc-cCch-HHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-cee
Confidence            3445566788888886 5777 7777778888888888887 67888888888888888888887 7777777775 788


Q ss_pred             EECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEEC
Q 001313          833 LDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDL  912 (1102)
Q Consensus       833 L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L  912 (1102)
                      |-+++|+++ .+|..++..                                                     ..|..||.
T Consensus       148 li~sNNkl~-~lp~~ig~~-----------------------------------------------------~tl~~ld~  173 (722)
T KOG0532|consen  148 LIVSNNKLT-SLPEEIGLL-----------------------------------------------------PTLAHLDV  173 (722)
T ss_pred             EEEecCccc-cCCcccccc-----------------------------------------------------hhHHHhhh
Confidence            888888886 444444311                                                     25778999


Q ss_pred             CCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCccc
Q 001313          913 SCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGK  992 (1102)
Q Consensus       913 s~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~  992 (1102)
                      |.|.+. .+|..++++.+|+.|++..|++. ..|..+..| .|..||+|.|+++ .||..|-+|..|++|-|.+|+|..+
T Consensus       174 s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  174 SKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSP  249 (722)
T ss_pred             hhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCC
Confidence            999998 68889999999999999999999 556667766 4889999999999 7999999999999999999999854

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.10  E-value=1.1e-10  Score=134.46  Aligned_cols=122  Identities=32%  Similarity=0.442  Sum_probs=58.9

Q ss_pred             EEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCc-cccEEEccCcccccccCcccccCccCccEEEccCc
Q 001313          712 HIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFV-CIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYN  790 (1102)
Q Consensus       712 ~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~-~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n  790 (1102)
                      .+++..|.+...+ ..+...+.++.|++.+|.++...|...... +|+.|++++|.+. .+|. .+.++++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~-~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPS-PLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCc-hhhhcccceeEEecCCcccccCccccccchhhcccccccccchh-hhhh-hhhccccccccccCCc
Confidence            4666666653222 223444667777777777763333222221 4555555555554 2322 3444555555555555


Q ss_pred             cCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCc
Q 001313          791 HLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNN  838 (1102)
Q Consensus       791 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N  838 (1102)
                      +++ .+|...+..+.|+.|++++|++. .+|........|++|++++|
T Consensus       174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N  219 (394)
T COG4886         174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNN  219 (394)
T ss_pred             hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCC
Confidence            554 23333334445555555555554 34443333444445555544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.09  E-value=1.1e-10  Score=113.73  Aligned_cols=111  Identities=28%  Similarity=0.394  Sum_probs=39.1

Q ss_pred             hcCCCcCEEEcCCCcccCCCChhhhc-cCCCCcEEEcCCCcCCcccccCCccccCCCCCcCEEEcCCCcCChhhhHhhhc
Q 001313          150 ARLSSLTSLDLSANRLKGSIDIKELD-SLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLAR  228 (1102)
Q Consensus       150 ~~l~~L~~L~Ls~n~l~~~~~~~~l~-~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~  228 (1102)
                      .+..++++|+|++|.|..   .+.++ .+.+|+.|++++|.+..+      +.+..+++|++|++++|.++...+.....
T Consensus        16 ~n~~~~~~L~L~~n~I~~---Ie~L~~~l~~L~~L~Ls~N~I~~l------~~l~~L~~L~~L~L~~N~I~~i~~~l~~~   86 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQIST---IENLGATLDKLEVLDLSNNQITKL------EGLPGLPRLKTLDLSNNRISSISEGLDKN   86 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S--------TT----TT--EEE--SS---S-CHHHHHH
T ss_pred             cccccccccccccccccc---ccchhhhhcCCCEEECCCCCCccc------cCccChhhhhhcccCCCCCCccccchHHh
Confidence            344455666666666552   23444 456666677777766665      45677888888888888887543322246


Q ss_pred             cCCCcEEEccCCcCCCCCchhhccCCCCCcEEecccCccCC
Q 001313          229 LSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDN  269 (1102)
Q Consensus       229 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~  269 (1102)
                      +++|++|++++|++...-....++.+++|++|++.+|.++.
T Consensus        87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred             CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence            78888888888888654445577888889999998888763

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=2.4e-11  Score=128.32  Aligned_cols=215  Identities=25%  Similarity=0.319  Sum_probs=114.7

Q ss_pred             cCCCCCcEEeCCCCcCCcchh-HhhhcCCCcCEEEcCCCcccCCCChhhh-ccCCCCcEEEcCCCcCCcccccCCccccC
Q 001313          126 SRLSNLKMLNLVGNLFNNSIL-SSLARLSSLTSLDLSANRLKGSIDIKEL-DSLRDLEKLNIGRNMIDKFVVSKGPKRLS  203 (1102)
Q Consensus       126 ~~l~~L~~L~Ls~n~~~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~l-~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~  203 (1102)
                      ++++.||...|.++.+..... .....|++++.|||++|-+..-.+...+ ..+++|+.|+++.|++......   ..-.
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s---~~~~  194 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS---NTTL  194 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc---cchh
Confidence            345566666666655442111 2445566666666666655432222222 4566666666666665433221   1112


Q ss_pred             CCCCcCEEEcCCCcCChh-hhHhhhccCCCcEEEccCCcCCCCCchhhccCCCCCcEEecccCccCCcchhhhhcccccc
Q 001313          204 RLNNLKVFDLSGNLFNNS-ILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKL  282 (1102)
Q Consensus       204 ~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L  282 (1102)
                      .+++|+.|.|+.|.++-. +...+..+|+|+.|+|..|... .+......-+..|++|||++|++-++........++.|
T Consensus       195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~-~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L  273 (505)
T KOG3207|consen  195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII-LIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGL  273 (505)
T ss_pred             hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc-ceecchhhhhhHHhhccccCCcccccccccccccccch
Confidence            455666666666666532 2223445566666666666421 11112334455666666666666555544445556666


Q ss_pred             ceeccccccccCchh----hhhhcCCCCCCCEEeCCCCCccccccccccccccccccceeecccchhh
Q 001313          283 SYLHLLRVGIRDGSK----LLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIA  346 (1102)
Q Consensus       283 ~~L~l~~~~~~~~~~----~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  346 (1102)
                      ..|+++.+.+.....    ...-...+|+|++|++..|++.+..  ....+..+++|+.+.+..+.+.
T Consensus       274 ~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~--sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  274 NQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWR--SLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             hhhhccccCcchhcCCCccchhhhcccccceeeecccCcccccc--ccchhhccchhhhhhccccccc
Confidence            666666665544221    1222456888999999988875332  2233445566777766665543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.07  E-value=7e-11  Score=121.69  Aligned_cols=195  Identities=23%  Similarity=0.219  Sum_probs=123.0

Q ss_pred             CCcEEEEEcCCCCCCc-ccccccccCCCCCCCCEEeCCCCCCCCcccch-------hhhhhcCCCCCcEEeCCCCcCCcc
Q 001313           73 MGRVVVLDLSQTHRGE-YWYLNASLFTPFQQLESLDLRDNDIAGCVENE-------GLERLSRLSNLKMLNLVGNLFNNS  144 (1102)
Q Consensus        73 ~~~v~~L~L~~~~~~~-~~~~~~~~~~~~~~L~~L~Ls~~~~~~~~~~~-------~~~~l~~l~~L~~L~Ls~n~~~~~  144 (1102)
                      ...++.++|+|+..+. ....-...+++-+.|+..++++- ++|.+...       ..+.+..+++|++||||+|.+...
T Consensus        29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~  107 (382)
T KOG1909|consen   29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK  107 (382)
T ss_pred             cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence            3468999999984332 12223446778889999999875 34443322       235566788999999999998743


Q ss_pred             hh----HhhhcCCCcCEEEcCCCcccCCCChhh-------------hccCCCCcEEEcCCCcCCcccccCCccccCCCCC
Q 001313          145 IL----SSLARLSSLTSLDLSANRLKGSIDIKE-------------LDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNN  207 (1102)
Q Consensus       145 ~~----~~l~~l~~L~~L~Ls~n~l~~~~~~~~-------------l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~  207 (1102)
                      .+    .-+.++..|++|.|.+|.+. ......             ...-++|+++..++|++.......+...+...+.
T Consensus       108 g~~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~  186 (382)
T KOG1909|consen  108 GIRGLEELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT  186 (382)
T ss_pred             chHHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence            33    34577899999999999874 222222             2344567777777777665544444455666667


Q ss_pred             cCEEEcCCCcCCh----hhhHhhhccCCCcEEEccCCcCCCCCc---hhhccCCCCCcEEecccCccCC
Q 001313          208 LKVFDLSGNLFNN----SILSSLARLSSLRSLLLYDNRLEGSID---VKEFDSLSNLEELDMSYNEIDN  269 (1102)
Q Consensus       208 L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~l~~l~~L~~L~L~~n~l~~  269 (1102)
                      |+.+.++.|.+..    .....+..+++|++|||.+|.++....   ...+..+++|++|++++|.+.+
T Consensus       187 leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~  255 (382)
T KOG1909|consen  187 LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLEN  255 (382)
T ss_pred             cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccc
Confidence            7777777766543    233455666777777777766542111   2345556666666666666554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.06  E-value=2.8e-10  Score=131.14  Aligned_cols=199  Identities=31%  Similarity=0.462  Sum_probs=131.0

Q ss_pred             cEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCcc-CccEEEccCccCcccCCccccCCCCCCEEEccC
Q 001313          735 QILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCL-TLMILDLSYNHLNGNIPDRVDGLSQLSYLILAH  813 (1102)
Q Consensus       735 ~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~  813 (1102)
                      ..++++.|.+...+......+.++.+++.+|.++. ++. ...... +|+.|++++|++. .+|..++.+++|+.|++++
T Consensus        96 ~~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~-i~~-~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~  172 (394)
T COG4886          96 PSLDLNLNRLRSNISELLELTNLTSLDLDNNNITD-IPP-LIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF  172 (394)
T ss_pred             ceeeccccccccCchhhhcccceeEEecCCccccc-Ccc-ccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence            35677777765555555555677778888877763 554 444443 7888888888877 4556677778888888888


Q ss_pred             ccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeecc
Q 001313          814 NNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTK  893 (1102)
Q Consensus       814 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  893 (1102)
                      |+++ .+|......+.|+.|++++|+++.. |....                                            
T Consensus       173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~~l-~~~~~--------------------------------------------  206 (394)
T COG4886         173 NDLS-DLPKLLSNLSNLNNLDLSGNKISDL-PPEIE--------------------------------------------  206 (394)
T ss_pred             chhh-hhhhhhhhhhhhhheeccCCccccC-chhhh--------------------------------------------
Confidence            8887 5666555777788888888877632 22110                                            


Q ss_pred             ceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhh
Q 001313          894 SITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQL  973 (1102)
Q Consensus       894 ~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l  973 (1102)
                               .+..|+++++++|++. .++..+.+++.+..|.+++|++. ..+..++.++.++.|++++|+++. ++. +
T Consensus       207 ---------~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~  273 (394)
T COG4886         207 ---------LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS-ISS-L  273 (394)
T ss_pred             ---------hhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccccccccc-ccc-c
Confidence                     1123666777777533 45556677777777777777776 336667777777777777777773 333 6


Q ss_pred             hcCCCCCEEEcccCcCcccCCc
Q 001313          974 VELNTLAVFSVAYNNLSGKIPE  995 (1102)
Q Consensus       974 ~~l~~L~~l~ls~N~l~~~~p~  995 (1102)
                      +.+.+++.+++++|.++...|.
T Consensus       274 ~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         274 GSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             cccCccCEEeccCccccccchh
Confidence            6777777777777777665554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.97  E-value=9.2e-10  Score=107.26  Aligned_cols=107  Identities=35%  Similarity=0.491  Sum_probs=26.5

Q ss_pred             CCCCCEEeCCCCCCCCcccchhhhhhc-CCCCCcEEeCCCCcCCcchhHhhhcCCCcCEEEcCCCcccCCCChhhh-ccC
Q 001313          100 FQQLESLDLRDNDIAGCVENEGLERLS-RLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKEL-DSL  177 (1102)
Q Consensus       100 ~~~L~~L~Ls~~~~~~~~~~~~~~~l~-~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l-~~l  177 (1102)
                      ...+++|+|++|.|....      .++ .+.+|+.|+|++|.++.  .+.+..+++|++|++++|+++. ++. .+ ..+
T Consensus        18 ~~~~~~L~L~~n~I~~Ie------~L~~~l~~L~~L~Ls~N~I~~--l~~l~~L~~L~~L~L~~N~I~~-i~~-~l~~~l   87 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTIE------NLGATLDKLEVLDLSNNQITK--LEGLPGLPRLKTLDLSNNRISS-ISE-GLDKNL   87 (175)
T ss_dssp             ------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CH-HHHHH-
T ss_pred             cccccccccccccccccc------chhhhhcCCCEEECCCCCCcc--ccCccChhhhhhcccCCCCCCc-ccc-chHHhC
Confidence            334566666666554321      233 34556666666666553  2345555666666666666553 221 22 345


Q ss_pred             CCCcEEEcCCCcCCcccccCCccccCCCCCcCEEEcCCCcCC
Q 001313          178 RDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFN  219 (1102)
Q Consensus       178 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~  219 (1102)
                      ++|++|++++|++.....   ...+..+++|++|++.+|.++
T Consensus        88 p~L~~L~L~~N~I~~l~~---l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   88 PNLQELYLSNNKISDLNE---LEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             TT--EEE-TTS---SCCC---CGGGGG-TT--EEE-TT-GGG
T ss_pred             CcCCEEECcCCcCCChHH---hHHHHcCCCcceeeccCCccc
Confidence            555555555555544322   133444555555555555543

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.95  E-value=7.3e-10  Score=80.51  Aligned_cols=42  Identities=36%  Similarity=0.697  Sum_probs=30.8

Q ss_pred             cHHHHHHHHhhhhhcc-CCCCCCCCCCCCCCCCCCcCcCceEec
Q 001313           28 LNHERFALLQLKLFFI-DPYNYLLDWVDDEGATDCCQWERVSCN   70 (1102)
Q Consensus        28 ~~~~~~all~~k~~~~-~~~~~l~~w~~~~~~~~cc~w~gv~c~   70 (1102)
                      +++|++||++||+++. +|.+.+++|.... +++||.|.||+|+
T Consensus         1 ~~~d~~aLl~~k~~l~~~~~~~l~~W~~~~-~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    1 PNQDRQALLAFKKSLNNDPSGVLSSWNPSS-DSDPCSWSGVTCD   43 (43)
T ss_dssp             -HHHHHHHHHHHHCTT-SC-CCCTT--TT---S-CCCSTTEEE-
T ss_pred             CcHHHHHHHHHHHhcccccCcccccCCCcC-CCCCeeeccEEeC
Confidence            3689999999999998 4668999998631 3699999999996

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=6.5e-10  Score=117.78  Aligned_cols=220  Identities=25%  Similarity=0.276  Sum_probs=140.0

Q ss_pred             hhhccCCCcEEEccCCcCCCCCchhhccCCCCCcEEecccCccCCcchhhhhccccccceeccccccccCchhhhhhcCC
Q 001313          225 SLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGS  304 (1102)
Q Consensus       225 ~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~  304 (1102)
                      -=+++.+|+...|.++........+....|++++.|||+.|-+..+.                         .+......
T Consensus       116 kQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~-------------------------~v~~i~eq  170 (505)
T KOG3207|consen  116 KQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWF-------------------------PVLKIAEQ  170 (505)
T ss_pred             HhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHH-------------------------HHHHHHHh
Confidence            34567899999999987652211245678999999999999776443                         22333455


Q ss_pred             CCCCCEEeCCCCCccccccccccccccccccceeecccchhhhchhhHHHhhccCCCCcEEecccCcCcCCcccccCCcc
Q 001313          305 FPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLC  384 (1102)
Q Consensus       305 l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~  384 (1102)
                      +|+|+.|+|+.|++........  -..++.|+.|.++.|.+.  ..-..++...+|+|+.|++..|........   ...
T Consensus       171 Lp~Le~LNls~Nrl~~~~~s~~--~~~l~~lK~L~l~~CGls--~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~---~~~  243 (505)
T KOG3207|consen  171 LPSLENLNLSSNRLSNFISSNT--TLLLSHLKQLVLNSCGLS--WKDVQWILLTFPSLEVLYLEANEIILIKAT---STK  243 (505)
T ss_pred             cccchhcccccccccCCccccc--hhhhhhhheEEeccCCCC--HHHHHHHHHhCCcHHHhhhhcccccceecc---hhh
Confidence            6666666666666543322111  114566777777777543  222233333488888888888852221111   334


Q ss_pred             CCCCccEEEcCCCcCCCCc-chhccCCCCCcEEEcCCCccccccCCcc-----cccCCccCeeecCCcccccccCccccc
Q 001313          385 PLVHLQELHMADNDLRGSL-PWCLANMTSLRILDVSSNQLIGSISSSP-----LIHLTSIEDLILSDNHFQIPISLEPLF  458 (1102)
Q Consensus       385 ~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~i~~~~-----l~~l~~L~~L~L~~n~l~~~~~~~~l~  458 (1102)
                      -+..|++|+|++|++.... -...+.++.|+.|+++.|.+...-.++.     ...+++|+.|++..|++...-....+.
T Consensus       244 i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~  323 (505)
T KOG3207|consen  244 ILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLR  323 (505)
T ss_pred             hhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhh
Confidence            4567888888888776422 1346778888888888887763222222     356788888888888886555566667


Q ss_pred             cCCcceEEecCCCccchh
Q 001313          459 NHSRLKIFDAENNEINAE  476 (1102)
Q Consensus       459 ~l~~L~~L~l~~n~l~~~  476 (1102)
                      .+++|+.+.+..|.+...
T Consensus       324 ~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  324 TLENLKHLRITLNYLNKE  341 (505)
T ss_pred             ccchhhhhhccccccccc
Confidence            777888888777776643

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.82  E-value=4.3e-09  Score=128.78  Aligned_cols=63  Identities=30%  Similarity=0.338  Sum_probs=32.6

Q ss_pred             hcCCCCCcEEeCCCCcCCcchhHhhhcCCCcCEEEcCCCcccCCCChhhhccCCCCcEEEcCCCc
Q 001313          125 LSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNM  189 (1102)
Q Consensus       125 l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~  189 (1102)
                      |..++.||+|||++|.--+.+|.+|+.|-+||+|+++++.+...  |..+.+|++|.+|++..+.
T Consensus       567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~L--P~~l~~Lk~L~~Lnl~~~~  629 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHL--PSGLGNLKKLIYLNLEVTG  629 (889)
T ss_pred             HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcccc--chHHHHHHhhheecccccc
Confidence            44555555555555544445555555555555555555555421  3445555555555554443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.80  E-value=7.9e-10  Score=110.76  Aligned_cols=135  Identities=30%  Similarity=0.406  Sum_probs=97.4

Q ss_pred             hcCCCCCcEEeCCCCcCCcchhHhhhcCCCcCEEEcCCCcccCCCChhhhccCCCCcEEEcCCCcCCcccccCCccccCC
Q 001313          125 LSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSR  204 (1102)
Q Consensus       125 l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~  204 (1102)
                      +...+.|+.+|||+|.++ .+..++.-.+.++.|++|+|.+..   .+.+..+++|++|||++|.++...     ..-.+
T Consensus       280 ~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~---v~nLa~L~~L~~LDLS~N~Ls~~~-----Gwh~K  350 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT---VQNLAELPQLQLLDLSGNLLAECV-----GWHLK  350 (490)
T ss_pred             cchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceee---ehhhhhcccceEeecccchhHhhh-----hhHhh
Confidence            345667778888888776 466677777888888888887763   345777888888888888776552     23456


Q ss_pred             CCCcCEEEcCCCcCChhhhHhhhccCCCcEEEccCCcCCCCCchhhccCCCCCcEEecccCccCCc
Q 001313          205 LNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNF  270 (1102)
Q Consensus       205 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~  270 (1102)
                      +.+.++|.|++|.+..  ...++++-+|..||+++|++...-....++++|.|+.+.+.+|.+...
T Consensus       351 LGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  351 LGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             hcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            7788888888887753  456777778888888888876433455678888888888888876543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.77  E-value=2.4e-09  Score=107.35  Aligned_cols=182  Identities=27%  Similarity=0.430  Sum_probs=124.6

Q ss_pred             CCCCCCCCEEeCCCCCCCCcccchhhhhhcCCCCCcEEeCCCCcCC-----------------------cchhHhhhcCC
Q 001313           97 FTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFN-----------------------NSILSSLARLS  153 (1102)
Q Consensus        97 ~~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~-----------------------~~~~~~l~~l~  153 (1102)
                      +..|++|..+.++.|+-..+..-     ...=+.|+++.+....++                       |.....+-..+
T Consensus       210 l~~f~~l~~~~~s~~~~~~i~~~-----~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq  284 (490)
T KOG1259|consen  210 LNAFRNLKTLKFSALSTENIVDI-----ELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQ  284 (490)
T ss_pred             hHHhhhhheeeeeccchhheece-----eecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHh
Confidence            34577788888887764322110     112245666666554332                       22222334457


Q ss_pred             CcCEEEcCCCcccCCCChhhhccCCCCcEEEcCCCcCCcccccCCccccCCCCCcCEEEcCCCcCChhhhHhhhccCCCc
Q 001313          154 SLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLR  233 (1102)
Q Consensus       154 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  233 (1102)
                      .|++||||+|.|+. ++ +.+.-+++++.|++++|.+...      ..+..+++|++|||++|.++. +..+-.++.+++
T Consensus       285 ~LtelDLS~N~I~~-iD-ESvKL~Pkir~L~lS~N~i~~v------~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIK  355 (490)
T KOG1259|consen  285 ELTELDLSGNLITQ-ID-ESVKLAPKLRRLILSQNRIRTV------QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIK  355 (490)
T ss_pred             hhhhccccccchhh-hh-hhhhhccceeEEeccccceeee------hhhhhcccceEeecccchhHh-hhhhHhhhcCEe
Confidence            88899999998873 33 5677788999999999988877      568888999999999998764 344556778889


Q ss_pred             EEEccCCcCCCCCchhhccCCCCCcEEecccCccCCcchhhhhccccccceeccccccccCchhhhhhcCCCCCCCEEeC
Q 001313          234 SLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDL  313 (1102)
Q Consensus       234 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L  313 (1102)
                      .|.|+.|.+.   ....+.++-+|..||+++|+|.....                          ...++++|.|+++.+
T Consensus       356 tL~La~N~iE---~LSGL~KLYSLvnLDl~~N~Ie~lde--------------------------V~~IG~LPCLE~l~L  406 (490)
T KOG1259|consen  356 TLKLAQNKIE---TLSGLRKLYSLVNLDLSSNQIEELDE--------------------------VNHIGNLPCLETLRL  406 (490)
T ss_pred             eeehhhhhHh---hhhhhHhhhhheeccccccchhhHHH--------------------------hcccccccHHHHHhh
Confidence            9999998875   23367788888999999998864432                          345677777777777


Q ss_pred             CCCCcccc
Q 001313          314 SYNNFTET  321 (1102)
Q Consensus       314 s~n~~~~~  321 (1102)
                      .+|++...
T Consensus       407 ~~NPl~~~  414 (490)
T KOG1259|consen  407 TGNPLAGS  414 (490)
T ss_pred             cCCCcccc
Confidence            77776544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.72  E-value=6.6e-09  Score=83.05  Aligned_cols=60  Identities=40%  Similarity=0.582  Sum_probs=34.4

Q ss_pred             cCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcC
Q 001313          930 KIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNL  989 (1102)
Q Consensus       930 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l  989 (1102)
                      +|++|++++|+|+...+..|.++++|++||+++|+++...|..|.++++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            455555555555555555555555566666666655555555555555666666655543

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.70  E-value=2.1e-09  Score=123.74  Aligned_cols=244  Identities=28%  Similarity=0.279  Sum_probs=131.1

Q ss_pred             CccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEc
Q 001313          660 TNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDI  739 (1102)
Q Consensus       660 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  739 (1102)
                      ..++.+.+..|.+.. +-..+..+++|+.|++.+|++.. +...+..+++|++|++++|.|+...+  +..++.|+.|++
T Consensus        72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l  147 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNL  147 (414)
T ss_pred             HhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccccc--hhhccchhhhee
Confidence            334444444444432 12224445555555555555552 22224445555555555555543322  233334555555


Q ss_pred             cCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCC-ccccCCCCCCEEEccCccccc
Q 001313          740 SDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIP-DRVDGLSQLSYLILAHNNLEG  818 (1102)
Q Consensus       740 s~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~  818 (1102)
                      ++|.++.                        +.  .+..++.|+.+++++|++...-+ . ...+.+++.+++.+|.+..
T Consensus       148 ~~N~i~~------------------------~~--~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~  200 (414)
T KOG0531|consen  148 SGNLISD------------------------IS--GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE  200 (414)
T ss_pred             ccCcchh------------------------cc--CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc
Confidence            5554431                        11  34445667777777777665433 2 4556667777777777652


Q ss_pred             cCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeee
Q 001313          819 EVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYT  898 (1102)
Q Consensus       819 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  898 (1102)
                      .  ..+..+..+..+++..|.++-.-+-.                                                   
T Consensus       201 i--~~~~~~~~l~~~~l~~n~i~~~~~l~---------------------------------------------------  227 (414)
T KOG0531|consen  201 I--EGLDLLKKLVLLSLLDNKISKLEGLN---------------------------------------------------  227 (414)
T ss_pred             c--cchHHHHHHHHhhcccccceeccCcc---------------------------------------------------
Confidence            2  22333344444466666654211100                                                   


Q ss_pred             ccCCcCC--CCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCccc---Cchh-
Q 001313          899 YQGRVPS--LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWK---IPYQ-  972 (1102)
Q Consensus       899 ~~~~~~~--~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~---~p~~-  972 (1102)
                          ...  .|+.+++++|++. .++..+..++.+..|++++|++...-  .+.....+..+.++.|++...   .+.. 
T Consensus       228 ----~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (414)
T KOG0531|consen  228 ----ELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAISQEYI  300 (414)
T ss_pred             ----cchhHHHHHHhcccCccc-cccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhhhhcccc
Confidence                000  2567788888876 33355667778888888888887432  344556777778888877622   1111 


Q ss_pred             hhcCCCCCEEEcccCcCcccCC
Q 001313          973 LVELNTLAVFSVAYNNLSGKIP  994 (1102)
Q Consensus       973 l~~l~~L~~l~ls~N~l~~~~p  994 (1102)
                      ......+....+..|+.....+
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  301 TSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             ccccccccccccccCccccccc
Confidence            4456677778888887766544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.69  E-value=6.4e-09  Score=83.13  Aligned_cols=60  Identities=48%  Similarity=0.646  Sum_probs=56.7

Q ss_pred             CCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcC
Q 001313          906 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKL  965 (1102)
Q Consensus       906 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  965 (1102)
                      .|+.|++++|+++...+..|..+++|++|++++|.++...|.+|.++++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            588999999999977778999999999999999999999999999999999999999986

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=5.3e-09  Score=105.13  Aligned_cols=67  Identities=27%  Similarity=0.227  Sum_probs=43.4

Q ss_pred             HHHhhccCCCCcEEecccCcCcCCcccccCCccCCCCccEEEcCCCcCCCCcchh---ccCCCCCcEEEcCCCc
Q 001313          352 LQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWC---LANMTSLRILDVSSNQ  422 (1102)
Q Consensus       352 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~Ls~n~  422 (1102)
                      .+.+...+|+|.+||+++|.-...  .....+.+++.|++|.++.|..  .+|..   +...++|.+|++.++-
T Consensus       305 ~~tL~~rcp~l~~LDLSD~v~l~~--~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  305 LSTLVRRCPNLVHLDLSDSVMLKN--DCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             HHHHHHhCCceeeeccccccccCc--hHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence            334444478888888887653222  3334667778888888887753  45543   4566788888888773

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.58  E-value=9.3e-09  Score=118.37  Aligned_cols=151  Identities=34%  Similarity=0.437  Sum_probs=91.4

Q ss_pred             CCCCCCEEeCCCCCCCCcccchhhhhhcCCCCCcEEeCCCCcCCcchhHhhhcCCCcCEEEcCCCcccCCCChhhhccCC
Q 001313           99 PFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLR  178 (1102)
Q Consensus        99 ~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~  178 (1102)
                      .+..++.+++..|.+....     ..+..+++|++|++.+|.+.. +...+..+++|++|++++|.|+..   ..+..++
T Consensus        70 ~l~~l~~l~l~~n~i~~~~-----~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i---~~l~~l~  140 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKIL-----NHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL---EGLSTLT  140 (414)
T ss_pred             HhHhHHhhccchhhhhhhh-----cccccccceeeeeccccchhh-cccchhhhhcchheeccccccccc---cchhhcc
Confidence            4555566666666655411     235667777777777777664 222266677777777777777642   3556666


Q ss_pred             CCcEEEcCCCcCCcccccCCccccCCCCCcCEEEcCCCcCChhhh-HhhhccCCCcEEEccCCcCCCCCchhhccCCCCC
Q 001313          179 DLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSIL-SSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNL  257 (1102)
Q Consensus       179 ~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L  257 (1102)
                      .|+.|++++|.+..+      ..+..++.|+.+++++|.+...-+ . +..+.+++.+.+.+|.+. .+  ..+..+..+
T Consensus       141 ~L~~L~l~~N~i~~~------~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~-~i--~~~~~~~~l  210 (414)
T KOG0531|consen  141 LLKELNLSGNLISDI------SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR-EI--EGLDLLKKL  210 (414)
T ss_pred             chhhheeccCcchhc------cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh-cc--cchHHHHHH
Confidence            677777777777666      455667777777777777665333 2 466667777777777654 11  233344444


Q ss_pred             cEEecccCccC
Q 001313          258 EELDMSYNEID  268 (1102)
Q Consensus       258 ~~L~L~~n~l~  268 (1102)
                      ..+++..|.++
T Consensus       211 ~~~~l~~n~i~  221 (414)
T KOG0531|consen  211 VLLSLLDNKIS  221 (414)
T ss_pred             HHhhcccccce
Confidence            44455555554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.50  E-value=1.6e-07  Score=115.23  Aligned_cols=130  Identities=25%  Similarity=0.258  Sum_probs=78.9

Q ss_pred             CCCCCEEeCCCCCCCCcccchhhhhhcCCCCCcEEeCCCCc--CCcchhHhhhcCCCcCEEEcCCCcccCCCChhhhccC
Q 001313          100 FQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNL--FNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSL  177 (1102)
Q Consensus       100 ~~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~--~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l  177 (1102)
                      ....|...+-++.+......      ...+.|++|-+.+|.  +.......|..++.|++|||++|.-.+.. |..++.|
T Consensus       522 ~~~~rr~s~~~~~~~~~~~~------~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~L-P~~I~~L  594 (889)
T KOG4658|consen  522 WNSVRRMSLMNNKIEHIAGS------SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKL-PSSIGEL  594 (889)
T ss_pred             hhheeEEEEeccchhhccCC------CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcC-ChHHhhh
Confidence            34556666555555433221      234467777776664  33333444666777777777776543332 4667777


Q ss_pred             CCCcEEEcCCCcCCcccccCCccccCCCCCcCEEEcCCCcCChhhhHhhhccCCCcEEEccCCc
Q 001313          178 RDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNR  241 (1102)
Q Consensus       178 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~  241 (1102)
                      -+||+|+++++.+...     |..++++..|.+|++..+.....++.....+++|++|.+....
T Consensus       595 i~LryL~L~~t~I~~L-----P~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  595 VHLRYLDLSDTGISHL-----PSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             hhhhcccccCCCcccc-----chHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            7777777777776644     4567777777777777766555555556667777777765544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=2.6e-08  Score=100.31  Aligned_cols=232  Identities=22%  Similarity=0.233  Sum_probs=140.1

Q ss_pred             CCcEEeCCCCcCCcchhHhhhcCC--CcCEEEcCCCcccCCCChhhhc-cCCCCcEEEcCCCcCCcccccCCccccCCCC
Q 001313          130 NLKMLNLVGNLFNNSILSSLARLS--SLTSLDLSANRLKGSIDIKELD-SLRDLEKLNIGRNMIDKFVVSKGPKRLSRLN  206 (1102)
Q Consensus       130 ~L~~L~Ls~n~~~~~~~~~l~~l~--~L~~L~Ls~n~l~~~~~~~~l~-~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~  206 (1102)
                      .-+.||+.+-.+.   |..++.+.  ...++.+........--.+.+. --+.||+|||+...++....   ...+..|.
T Consensus       137 lW~~lDl~~r~i~---p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl---~~iLs~C~  210 (419)
T KOG2120|consen  137 LWQTLDLTGRNIH---PDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTL---HGILSQCS  210 (419)
T ss_pred             ceeeeccCCCccC---hhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHH---HHHHHHHH
Confidence            3456777776665   55555553  3334444332222110011111 11347888888777654321   13456778


Q ss_pred             CcCEEEcCCCcCChhhhHhhhccCCCcEEEccCCc-CCCCCchhhccCCCCCcEEecccCccCCcchhhhhc-cccccce
Q 001313          207 NLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNR-LEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACS-GLRKLSY  284 (1102)
Q Consensus       207 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~l~~L~~  284 (1102)
                      +|+.|.+.++++.+.+...+++-.+|+.|+++.+. ++.....-.+.+|+.|++|+++||......+..... -.+.++.
T Consensus       211 kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~  290 (419)
T KOG2120|consen  211 KLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQ  290 (419)
T ss_pred             hhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhh
Confidence            88888888888888888888888888888888764 221111123577888888888888766554443333 3456777


Q ss_pred             eccccccccCc-hhhhhhcCCCCCCCEEeCCCCCccccccccccccccccccceeecccchhhhchhhHHHhhccCCCCc
Q 001313          285 LHLLRVGIRDG-SKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQ  363 (1102)
Q Consensus       285 L~l~~~~~~~~-~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~  363 (1102)
                      |+++++.-.-. ..+..-...+|+|.+|||++|...+.  ..+..+..++.|+++.++.|-......+..  ....|.|.
T Consensus       291 LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~--~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~--l~s~psl~  366 (419)
T KOG2120|consen  291 LNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN--DCFQEFFKFNYLQHLSLSRCYDIIPETLLE--LNSKPSLV  366 (419)
T ss_pred             hhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc--hHHHHHHhcchheeeehhhhcCCChHHeee--eccCcceE
Confidence            77776643322 23444456789999999998865433  334557788899999988884211111111  12378999


Q ss_pred             EEecccCc
Q 001313          364 YLSLSNSS  371 (1102)
Q Consensus       364 ~L~L~~~~  371 (1102)
                      +|++.+|-
T Consensus       367 yLdv~g~v  374 (419)
T KOG2120|consen  367 YLDVFGCV  374 (419)
T ss_pred             EEEecccc
Confidence            99988764

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.42  E-value=2.4e-08  Score=105.52  Aligned_cols=262  Identities=17%  Similarity=0.166  Sum_probs=146.8

Q ss_pred             CCCcEEeCCCCcCCc--chhHhhhcCCCcCEEEcCCCcccCCCChhhh-ccCCCCcEEEcCCCc-CCcccccCCccccCC
Q 001313          129 SNLKMLNLVGNLFNN--SILSSLARLSSLTSLDLSANRLKGSIDIKEL-DSLRDLEKLNIGRNM-IDKFVVSKGPKRLSR  204 (1102)
Q Consensus       129 ~~L~~L~Ls~n~~~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l-~~l~~L~~L~Ls~n~-~~~~~~~~~~~~l~~  204 (1102)
                      ..||.|.++|+.-.+  .+-..-.+++++++|++.+|..........+ ..+++|++|++..|. ++....   ......
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~L---k~la~g  214 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSL---KYLAEG  214 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHH---HHHHHh
Confidence            468888888876432  2334456789999999988864322222333 457888888888743 333211   012346


Q ss_pred             CCCcCEEEcCCCc-CChh-hhHhhhccCCCcEEEccCCcCCCCCchhhc----cCCCCCcEEecccC-ccCCcchhhhhc
Q 001313          205 LNNLKVFDLSGNL-FNNS-ILSSLARLSSLRSLLLYDNRLEGSIDVKEF----DSLSNLEELDMSYN-EIDNFEVPQACS  277 (1102)
Q Consensus       205 l~~L~~L~Ls~n~-l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l----~~l~~L~~L~L~~n-~l~~~~~~~~~~  277 (1102)
                      +++|++|+++++. +++. +-.-..++..++.+.+.+|.   ..+.+.+    +.+..+.++++..+ .+++.....+..
T Consensus       215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~---e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~  291 (483)
T KOG4341|consen  215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCL---ELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIAC  291 (483)
T ss_pred             hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccc---cccHHHHHHHhccChHhhccchhhhccccchHHHHHhh
Confidence            7888888888874 3331 11234455667777666653   2232233    23344556665454 456666667777


Q ss_pred             cccccceeccccccccCchhhhhhcCCCCCCCEEeCCCCCcccccccccccc-ccccccceeecccchhhhchhhHHHhh
Q 001313          278 GLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGF-PHFKSLKELYMDDARIALNTSFLQIIG  356 (1102)
Q Consensus       278 ~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~  356 (1102)
                      .+..++.+..+++...+...+..--...++|+.|.++.|+.....  .+..+ .+++.|+.+++.++....++++.+...
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~--~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~  369 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDR--GFTMLGRNCPHLERLDLEECGLITDGTLASLSR  369 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhh--hhhhhhcCChhhhhhcccccceehhhhHhhhcc
Confidence            788888888877766544444444456788888888887642211  11111 235666666666665544444433333


Q ss_pred             ccCCCCcEEecccCcCcCCc--ccccCCccCCCCccEEEcCCCcC
Q 001313          357 ESMPSIQYLSLSNSSVSNNS--RTLDQGLCPLVHLQELHMADNDL  399 (1102)
Q Consensus       357 ~~l~~L~~L~L~~~~~~~~~--~~~~~~l~~l~~L~~L~L~~n~l  399 (1102)
                      . ++.|++|.+++|......  ..+...-+....|+.+.|++++.
T Consensus       370 ~-C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~  413 (483)
T KOG4341|consen  370 N-CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPL  413 (483)
T ss_pred             C-CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCC
Confidence            3 666666666666532221  11111223344455555555543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.40  E-value=5.6e-08  Score=97.88  Aligned_cols=65  Identities=22%  Similarity=0.291  Sum_probs=39.3

Q ss_pred             CCCCcEEecccCcCcCCcccccCCccCCCCccEEEcCCCcCCCC-cchhccCCCCCcEEEcCCCcccc
Q 001313          359 MPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGS-LPWCLANMTSLRILDVSSNQLIG  425 (1102)
Q Consensus       359 l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~  425 (1102)
                      +|++..+-+..|.+......  ++...++.+--|+|+.+++... --..+.++++|+.|.++++++..
T Consensus       198 Fpnv~sv~v~e~PlK~~s~e--k~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  198 FPNVNSVFVCEGPLKTESSE--KGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             cccchheeeecCcccchhhc--ccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            67777777776665443222  3455566666777777766542 12446667777777777776654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.35  E-value=2.5e-08  Score=112.00  Aligned_cols=20  Identities=35%  Similarity=0.627  Sum_probs=16.0

Q ss_pred             cCCCCCCCCEEeCCCCCCCC
Q 001313           96 LFTPFQQLESLDLRDNDIAG  115 (1102)
Q Consensus        96 ~~~~~~~L~~L~Ls~~~~~~  115 (1102)
                      .+..|+.||+|.|.+|++..
T Consensus       104 ~ifpF~sLr~LElrg~~L~~  123 (1096)
T KOG1859|consen  104 SIFPFRSLRVLELRGCDLST  123 (1096)
T ss_pred             eeccccceeeEEecCcchhh
Confidence            34678999999999998764

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.33  E-value=2.2e-07  Score=92.51  Aligned_cols=16  Identities=31%  Similarity=0.339  Sum_probs=9.8

Q ss_pred             CCCCCCEEeCCCCCcc
Q 001313          304 SFPSLNTLDLSYNNFT  319 (1102)
Q Consensus       304 ~l~~L~~L~Ls~n~~~  319 (1102)
                      ..|+|..|...+|.+.
T Consensus       270 ~~p~l~~L~~~Yne~~  285 (388)
T COG5238         270 FVPNLMPLPGDYNERR  285 (388)
T ss_pred             cCCCccccccchhhhc
Confidence            3566666666666553

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.23  E-value=4.3e-07  Score=90.47  Aligned_cols=65  Identities=22%  Similarity=0.225  Sum_probs=30.9

Q ss_pred             CCCCcEEecccCcCcCCccc-ccCCccCCCCccEEEcCCCcCCCCcchhc------cCCCCCcEEEcCCCcc
Q 001313          359 MPSIQYLSLSNSSVSNNSRT-LDQGLCPLVHLQELHMADNDLRGSLPWCL------ANMTSLRILDVSSNQL  423 (1102)
Q Consensus       359 l~~L~~L~L~~~~~~~~~~~-~~~~l~~l~~L~~L~L~~n~l~~~~p~~l------~~l~~L~~L~Ls~n~l  423 (1102)
                      +.+|+.|++.+|.++-.... +...++..+.|++|.+.+|-++.....++      ...++|..|-..+|..
T Consensus       213 ~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~  284 (388)
T COG5238         213 SHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNER  284 (388)
T ss_pred             hCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhh
Confidence            56666666666665533211 11133444456666666665544322221      1234455555555543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.20  E-value=1.1e-07  Score=106.98  Aligned_cols=159  Identities=28%  Similarity=0.311  Sum_probs=100.5

Q ss_pred             hhcCCCCCcEEeCCCCcCCc---c--hhHhh--------------------hc------CCCcCEEEcCCCcccCCCChh
Q 001313          124 RLSRLSNLKMLNLVGNLFNN---S--ILSSL--------------------AR------LSSLTSLDLSANRLKGSIDIK  172 (1102)
Q Consensus       124 ~l~~l~~L~~L~Ls~n~~~~---~--~~~~l--------------------~~------l~~L~~L~Ls~n~l~~~~~~~  172 (1102)
                      .+..++.||+|.|.++.+..   .  +-..+                    +.      .-.|.+.+.++|.++..  -.
T Consensus       104 ~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~m--D~  181 (1096)
T KOG1859|consen  104 SIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLM--DE  181 (1096)
T ss_pred             eeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhH--HH
Confidence            35678899999999987753   0  00000                    11      12344555666665522  24


Q ss_pred             hhccCCCCcEEEcCCCcCCcccccCCccccCCCCCcCEEEcCCCcCChhhhHhhhccCCCcEEEccCCcCCCCCchhhcc
Q 001313          173 ELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFD  252 (1102)
Q Consensus       173 ~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~  252 (1102)
                      .+.-++.|+.|+|++|++...      ..+..|++|++|||++|.+....--....+. |+.|.+++|.++ .  ...+.
T Consensus       182 SLqll~ale~LnLshNk~~~v------~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~-t--L~gie  251 (1096)
T KOG1859|consen  182 SLQLLPALESLNLSHNKFTKV------DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALT-T--LRGIE  251 (1096)
T ss_pred             HHHHHHHhhhhccchhhhhhh------HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHH-h--hhhHH
Confidence            566677788888888887766      5677788888888888877653322333444 788888888765 2  23567


Q ss_pred             CCCCCcEEecccCccCCcchhhhhccccccceeccccccccC
Q 001313          253 SLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRD  294 (1102)
Q Consensus       253 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~  294 (1102)
                      ++++|+.||+++|-+.+..-......+..|+.|.+.+|.+..
T Consensus       252 ~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  252 NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            777888888888877665555555556666666666665543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.19  E-value=3e-07  Score=97.44  Aligned_cols=238  Identities=17%  Similarity=0.137  Sum_probs=113.6

Q ss_pred             CcCEEEcCCCcCChh--hhHhhhccCCCcEEEccCCcCCCCCchh-hccCCCCCcEEecccC-ccCCcchhhhhcccccc
Q 001313          207 NLKVFDLSGNLFNNS--ILSSLARLSSLRSLLLYDNRLEGSIDVK-EFDSLSNLEELDMSYN-EIDNFEVPQACSGLRKL  282 (1102)
Q Consensus       207 ~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L  282 (1102)
                      .|+.|.++++.-.+.  .-..-.+++++++|.+.++.......-. .-..+++|++|++..| .+++.........    
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~g----  214 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEG----  214 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHh----
Confidence            455666666543221  1122344566666666555422111111 1134555666665553 3343333333444    


Q ss_pred             ceeccccccccCchhhhhhcCCCCCCCEEeCCCCCccccccccccccccccccceeecccchhhhchhhHHHhhccCCCC
Q 001313          283 SYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSI  362 (1102)
Q Consensus       283 ~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L  362 (1102)
                                            +++|++|++++|....... .......++.++.+...+|.-.....+.. +...++.+
T Consensus       215 ----------------------C~kL~~lNlSwc~qi~~~g-v~~~~rG~~~l~~~~~kGC~e~~le~l~~-~~~~~~~i  270 (483)
T KOG4341|consen  215 ----------------------CRKLKYLNLSWCPQISGNG-VQALQRGCKELEKLSLKGCLELELEALLK-AAAYCLEI  270 (483)
T ss_pred             ----------------------hhhHHHhhhccCchhhcCc-chHHhccchhhhhhhhcccccccHHHHHH-HhccChHh
Confidence                                  4555555555544322210 00112334445555555553222222222 22236667


Q ss_pred             cEEecccCcCcCCcccccCCccCCCCccEEEcCCCcCCCCc-chh-ccCCCCCcEEEcCCCccccccCCccc-ccCCccC
Q 001313          363 QYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSL-PWC-LANMTSLRILDVSSNQLIGSISSSPL-IHLTSIE  439 (1102)
Q Consensus       363 ~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-p~~-l~~l~~L~~L~Ls~n~l~~~i~~~~l-~~l~~L~  439 (1102)
                      .++++.+|....... +...-..+..|+.++.+++...+.. -.. -.+..+|+.|.++.|+.-+......+ .+++.|+
T Consensus       271 ~~lnl~~c~~lTD~~-~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le  349 (483)
T KOG4341|consen  271 LKLNLQHCNQLTDED-LWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLE  349 (483)
T ss_pred             hccchhhhccccchH-HHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhh
Confidence            777766764322211 1112244677888888777543211 112 24567888888888863322222222 3567788


Q ss_pred             eeecCCcccccccCccc-cccCCcceEEecCCCcc
Q 001313          440 DLILSDNHFQIPISLEP-LFNHSRLKIFDAENNEI  473 (1102)
Q Consensus       440 ~L~L~~n~l~~~~~~~~-l~~l~~L~~L~l~~n~l  473 (1102)
                      .+++..+.......+.. -.+++.|+.+.++.+..
T Consensus       350 ~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~  384 (483)
T KOG4341|consen  350 RLDLEECGLITDGTLASLSRNCPRLRVLSLSHCEL  384 (483)
T ss_pred             hhcccccceehhhhHhhhccCCchhccCChhhhhh
Confidence            88888776543222222 24667777777765543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.17  E-value=9e-07  Score=89.44  Aligned_cols=213  Identities=19%  Similarity=0.232  Sum_probs=96.1

Q ss_pred             CCCCCCEEeCCCCCCCCcccchhhhhhcCCCCCcEEeCCCCcCCcchhHhhhcCCCcCEEEcCCCcccCCCChhhhccCC
Q 001313           99 PFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLR  178 (1102)
Q Consensus        99 ~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~  178 (1102)
                      ..++++.|||.+|.++.-..  ...-+.++|+|++|+++.|.+...+-.--..+.+|++|-|.+..+.-......+..++
T Consensus        69 ~~~~v~elDL~~N~iSdWse--I~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP  146 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSE--IGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP  146 (418)
T ss_pred             HhhhhhhhhcccchhccHHH--HHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence            34556666666665543221  1233455666666666666554221111123455666666555543222223344555


Q ss_pred             CCcEEEcCCCcCCcccccCCccccC-CCCCcCEEEcCCCcCCh--hhhHhhhccCCCcEEEccCCcCCCCCchhhccCCC
Q 001313          179 DLEKLNIGRNMIDKFVVSKGPKRLS-RLNNLKVFDLSGNLFNN--SILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLS  255 (1102)
Q Consensus       179 ~L~~L~Ls~n~~~~~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~  255 (1102)
                      .++.|.++.|.+.-...+.  .... --+.+++|.+-.|....  .....-.-++++..+.+..|.+......+.+..++
T Consensus       147 ~vtelHmS~N~~rq~n~Dd--~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p  224 (418)
T KOG2982|consen  147 KVTELHMSDNSLRQLNLDD--NCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFP  224 (418)
T ss_pred             hhhhhhhccchhhhhcccc--ccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCC
Confidence            5555555555332221110  0000 11233333333332211  00000112345555555555444333333444445


Q ss_pred             CCcEEecccCccCCcchhhhhccccccceeccccccccCchhhhhhcCCCCCCCEEeCCCCCcccccc---ccccccccc
Q 001313          256 NLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVT---TTTQGFPHF  332 (1102)
Q Consensus       256 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~---~~~~~~~~l  332 (1102)
                      .+..|+|+.+++.+.                          +-...+..+|.|..|.++++++.+...   ...--++.+
T Consensus       225 ~~~~LnL~~~~idsw--------------------------asvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL  278 (418)
T KOG2982|consen  225 SLSCLNLGANNIDSW--------------------------ASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARL  278 (418)
T ss_pred             cchhhhhcccccccH--------------------------HHHHHHcCCchhheeeccCCcccccccCCcceEEEEeec
Confidence            555555555555433                          334566777777777777777654321   112234566


Q ss_pred             cccceeecc
Q 001313          333 KSLKELYMD  341 (1102)
Q Consensus       333 ~~L~~L~l~  341 (1102)
                      ++++.|+=+
T Consensus       279 ~~v~vLNGs  287 (418)
T KOG2982|consen  279 TKVQVLNGS  287 (418)
T ss_pred             cceEEecCc
Confidence            777776644

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.11  E-value=1.5e-07  Score=83.87  Aligned_cols=57  Identities=25%  Similarity=0.446  Sum_probs=26.6

Q ss_pred             ceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCc
Q 001313          908 SGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS  966 (1102)
Q Consensus       908 ~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  966 (1102)
                      +.++|++|.++ .+|.++..++.|+.||++.|.+. ..|..|..|.++-.||..+|.+.
T Consensus        80 t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen   80 TTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             hhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            34444444444 34444444455555555555444 33444444444444444444444

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.98  E-value=5.6e-06  Score=99.17  Aligned_cols=153  Identities=24%  Similarity=0.272  Sum_probs=108.2

Q ss_pred             CCCCcEEeCCCCc-CCcchhHhhhc-CCCcCEEEcCCCcccCCCChhhhccCCCCcEEEcCCCcCCcccccCCccccCCC
Q 001313          128 LSNLKMLNLVGNL-FNNSILSSLAR-LSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRL  205 (1102)
Q Consensus       128 l~~L~~L~Ls~n~-~~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l  205 (1102)
                      -.+|++|+++|.. +....|..++. ||+|++|.+++-.+...--.....++++|..||+|+++++..      .+++++
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl------~GIS~L  194 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL------SGISRL  194 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc------HHHhcc
Confidence            4679999998865 33445555654 799999999887765321123446789999999999998877      678899


Q ss_pred             CCcCEEEcCCCcCCh-hhhHhhhccCCCcEEEccCCcCCCCC--c---hhhccCCCCCcEEecccCccCCcchhhhhccc
Q 001313          206 NNLKVFDLSGNLFNN-SILSSLARLSSLRSLLLYDNRLEGSI--D---VKEFDSLSNLEELDMSYNEIDNFEVPQACSGL  279 (1102)
Q Consensus       206 ~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~--~---~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l  279 (1102)
                      ++|++|.+.+-.+.. .....+.++++|++||+|........  .   .+.-..+|+|+.||.|++.+............
T Consensus       195 knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH  274 (699)
T KOG3665|consen  195 KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSH  274 (699)
T ss_pred             ccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhC
Confidence            999999888877764 44557888999999999887654221  1   11224588999999998887765555555555


Q ss_pred             cccceec
Q 001313          280 RKLSYLH  286 (1102)
Q Consensus       280 ~~L~~L~  286 (1102)
                      ++|+.+.
T Consensus       275 ~~L~~i~  281 (699)
T KOG3665|consen  275 PNLQQIA  281 (699)
T ss_pred             ccHhhhh
Confidence            5555443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.85  E-value=8.6e-06  Score=97.61  Aligned_cols=153  Identities=23%  Similarity=0.327  Sum_probs=102.1

Q ss_pred             CCCCEEeCCCCCCCCcccchhhhhhc-CCCCCcEEeCCCCcCCc-chhHhhhcCCCcCEEEcCCCcccCCCChhhhccCC
Q 001313          101 QQLESLDLRDNDIAGCVENEGLERLS-RLSNLKMLNLVGNLFNN-SILSSLARLSSLTSLDLSANRLKGSIDIKELDSLR  178 (1102)
Q Consensus       101 ~~L~~L~Ls~~~~~~~~~~~~~~~l~-~l~~L~~L~Ls~n~~~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~  178 (1102)
                      ++||+||+++...-...   ....++ .||+||.|.+++-.+.. .......++++|..||+|+++++.   ...+++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~---W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n---l~GIS~Lk  195 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNG---WPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN---LSGISRLK  195 (699)
T ss_pred             HhhhhcCccccchhhcc---HHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC---cHHHhccc
Confidence            57888888875432111   122333 48899999998877643 334455678999999999988873   36788899


Q ss_pred             CCcEEEcCCCcCCcccccCCccccCCCCCcCEEEcCCCcCChhh------hHhhhccCCCcEEEccCCcCCCCCchhhcc
Q 001313          179 DLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSI------LSSLARLSSLRSLLLYDNRLEGSIDVKEFD  252 (1102)
Q Consensus       179 ~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~------~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~  252 (1102)
                      +|+.|.+.+-.+.....   ...+.+|++|++||+|........      .+.-..+|+|+.||.+++.+.+.+-...+.
T Consensus       196 nLq~L~mrnLe~e~~~~---l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~  272 (699)
T KOG3665|consen  196 NLQVLSMRNLEFESYQD---LIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLN  272 (699)
T ss_pred             cHHHHhccCCCCCchhh---HHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHH
Confidence            99988887766654311   146778999999999886554321      122234789999999988776554444445


Q ss_pred             CCCCCcEEec
Q 001313          253 SLSNLEELDM  262 (1102)
Q Consensus       253 ~l~~L~~L~L  262 (1102)
                      ..++|+.+..
T Consensus       273 sH~~L~~i~~  282 (699)
T KOG3665|consen  273 SHPNLQQIAA  282 (699)
T ss_pred             hCccHhhhhh
Confidence            5566665543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.76  E-value=1.9e-06  Score=77.05  Aligned_cols=86  Identities=23%  Similarity=0.335  Sum_probs=53.0

Q ss_pred             CCcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEE
Q 001313          562 KQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSL  641 (1102)
Q Consensus       562 ~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L  641 (1102)
                      ..|+.+++++|.+. .+|..+...++.++.|++++|.++ .+|..+..++.|+.|+++.|.+. ..|..++. +.++-.|
T Consensus        53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~-L~~l~~L  128 (177)
T KOG4579|consen   53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAP-LIKLDML  128 (177)
T ss_pred             ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHH-HHhHHHh
Confidence            34555666666665 556655554556666777777666 45666666667777777777666 55655553 5566666


Q ss_pred             EccccccCCc
Q 001313          642 ALSNNNLEGH  651 (1102)
Q Consensus       642 ~L~~n~l~~~  651 (1102)
                      +..+|.+..+
T Consensus       129 ds~~na~~ei  138 (177)
T KOG4579|consen  129 DSPENARAEI  138 (177)
T ss_pred             cCCCCccccC
Confidence            6666655443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.76  E-value=2e-05  Score=57.26  Aligned_cols=36  Identities=42%  Similarity=0.729  Sum_probs=17.7

Q ss_pred             cCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCc
Q 001313          930 KIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS  966 (1102)
Q Consensus       930 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  966 (1102)
                      +|++|++++|+|+ .+|..++++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555555555555 33444555555555555555554

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.67  E-value=6e-05  Score=72.59  Aligned_cols=85  Identities=21%  Similarity=0.299  Sum_probs=56.7

Q ss_pred             CCcEEEcCCCcCCcccccCCccccCCCCCcCEEEcCCCcCChhhhHhhhccCCCcEEEccCCcCCCCCchhhccCCCCCc
Q 001313          179 DLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLE  258 (1102)
Q Consensus       179 ~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~  258 (1102)
                      ....+||+.|.+...      ..|..++.|.+|.+..|+|+...|.--..+++|+.|.|.+|.+....+...+..|++|+
T Consensus        43 ~~d~iDLtdNdl~~l------~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~  116 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL------DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLE  116 (233)
T ss_pred             ccceecccccchhhc------ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccc
Confidence            344455555555444      45666777777777777777655555555677888888888776544555677888888


Q ss_pred             EEecccCccCC
Q 001313          259 ELDMSYNEIDN  269 (1102)
Q Consensus       259 ~L~L~~n~l~~  269 (1102)
                      +|.+-+|.++.
T Consensus       117 ~Ltll~Npv~~  127 (233)
T KOG1644|consen  117 YLTLLGNPVEH  127 (233)
T ss_pred             eeeecCCchhc
Confidence            88888887653

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.50  E-value=0.0004  Score=76.57  Aligned_cols=15  Identities=7%  Similarity=0.027  Sum_probs=8.1

Q ss_pred             CCCCcEEEccCCCCc
Q 001313          537 NTKLRQLSLVNDSLV  551 (1102)
Q Consensus       537 ~~~L~~L~L~~n~l~  551 (1102)
                      +..++.|++++|.++
T Consensus        51 ~~~l~~L~Is~c~L~   65 (426)
T PRK15386         51 ARASGRLYIKDCDIE   65 (426)
T ss_pred             hcCCCEEEeCCCCCc
Confidence            455555555555444

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.50  E-value=0.00024  Score=78.23  Aligned_cols=53  Identities=11%  Similarity=0.116  Sum_probs=22.9

Q ss_pred             ccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCc
Q 001313          755 VCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHN  814 (1102)
Q Consensus       755 ~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N  814 (1102)
                      ..++.|++++|.++ .+|.  +  ..+|+.|.++++.--..+|+.+.  ++|+.|++++|
T Consensus        52 ~~l~~L~Is~c~L~-sLP~--L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C  104 (426)
T PRK15386         52 RASGRLYIKDCDIE-SLPV--L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC  104 (426)
T ss_pred             cCCCEEEeCCCCCc-ccCC--C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence            44555555555443 2331  1  12355555554332223443331  34555555554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.48  E-value=9e-05  Score=53.88  Aligned_cols=36  Identities=36%  Similarity=0.569  Sum_probs=18.9

Q ss_pred             CCCEEEccCccccccCchhhcCCCCCCEEECcCccCC
Q 001313          805 QLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH  841 (1102)
Q Consensus       805 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  841 (1102)
                      +|++|++++|+++ .+|..+.++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555555555555 34444555556666666665554

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.44  E-value=0.00029  Score=66.59  Aligned_cols=83  Identities=25%  Similarity=0.242  Sum_probs=30.4

Q ss_pred             hhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCc
Q 001313          582 IGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTN  661 (1102)
Q Consensus       582 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  661 (1102)
                      .+..+++|+.+.+.. .+..+...+|.++++|+.+.+.++ +. .++...|.++.+++.+.+.+ .+.......|..+++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccc
Confidence            333344555555543 334344445555555555555443 33 44444444444455554433 222222333333444


Q ss_pred             cCeeecc
Q 001313          662 LIWLQLE  668 (1102)
Q Consensus       662 L~~L~L~  668 (1102)
                      |+.+++.
T Consensus        83 l~~i~~~   89 (129)
T PF13306_consen   83 LKNIDIP   89 (129)
T ss_dssp             ECEEEET
T ss_pred             ccccccC
Confidence            4444443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.39  E-value=0.00038  Score=65.71  Aligned_cols=125  Identities=21%  Similarity=0.259  Sum_probs=67.5

Q ss_pred             CcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCC
Q 001313          604 PSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKC  683 (1102)
Q Consensus       604 ~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  683 (1102)
                      ..+|.++++|+.+.+.. .+. .++...|.++++|+.+.+.++ +..+....|.++++++.+.+.+ .+.......|..+
T Consensus         5 ~~~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~   80 (129)
T PF13306_consen    5 NNAFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC   80 (129)
T ss_dssp             TTTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred             HHHHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence            45788888888888875 566 788888888888888888775 7766667777777788888865 4443445567778


Q ss_pred             CCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCccc
Q 001313          684 SSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQ  735 (1102)
Q Consensus       684 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  735 (1102)
                      ++|+.+++..+ +.......|.++ +++.+.+.. .+.......|.++++|+
T Consensus        81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred             ccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence            88888888665 443445566676 777777765 44445556676666653

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.34  E-value=0.00029  Score=68.06  Aligned_cols=109  Identities=26%  Similarity=0.256  Sum_probs=59.2

Q ss_pred             CCCCEEeCCCCCCCCcccchhhhhhcCCCCCcEEeCCCCcCCcchhHhhhcCCCcCEEEcCCCcccCCCChhhhccCCCC
Q 001313          101 QQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDL  180 (1102)
Q Consensus       101 ~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L  180 (1102)
                      .....+||++|++....      .|..+++|.+|.|+.|.|+..-|.--.-+++|++|.|.+|++....+...+..+++|
T Consensus        42 d~~d~iDLtdNdl~~l~------~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L  115 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLD------NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKL  115 (233)
T ss_pred             cccceecccccchhhcc------cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcc
Confidence            34556777777665432      355666677777777776643333333356677777777766544444555666666


Q ss_pred             cEEEcCCCcCCcccccCCccccCCCCCcCEEEcCCC
Q 001313          181 EKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGN  216 (1102)
Q Consensus       181 ~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n  216 (1102)
                      ++|.+-+|.+....-- -.-.+..+++|++||.+.-
T Consensus       116 ~~Ltll~Npv~~k~~Y-R~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  116 EYLTLLGNPVEHKKNY-RLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             ceeeecCCchhcccCc-eeEEEEecCcceEeehhhh
Confidence            6666666655433110 0012345555555555443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.93  E-value=0.00029  Score=71.23  Aligned_cols=107  Identities=27%  Similarity=0.321  Sum_probs=58.7

Q ss_pred             CCCCCCEEeCCCCCCCCcccchhhhhhcCCCCCcEEeCCCC--cCCcchhHhhhcCCCcCEEEcCCCcccCCCChhhhcc
Q 001313           99 PFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGN--LFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDS  176 (1102)
Q Consensus        99 ~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n--~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~  176 (1102)
                      .+..|+.|++.+..++..      ..+..+++|++|.+|.|  .+.+.++.....+++|++|++++|++......     
T Consensus        41 ~~~~le~ls~~n~gltt~------~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl-----  109 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTL------TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL-----  109 (260)
T ss_pred             cccchhhhhhhccceeec------ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc-----
Confidence            445556666665555432      23556777777777777  44444444445557777777777766521112     


Q ss_pred             CCCCcEEEcCCCcCCcccccCCccccCCCCCcCEEEcCCCcCCh---hhhHhhhccCCCcEEEccC
Q 001313          177 LRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNN---SILSSLARLSSLRSLLLYD  239 (1102)
Q Consensus       177 l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~---~~~~~l~~l~~L~~L~L~~  239 (1102)
                                             ..+..+.+|..|++..|..+.   .--..+.-+++|++|+-..
T Consensus       110 -----------------------~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  110 -----------------------RPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             -----------------------chhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence                                   233444555555555554433   2223455667777776443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.89  E-value=0.0005  Score=69.60  Aligned_cols=70  Identities=23%  Similarity=0.364  Sum_probs=43.1

Q ss_pred             cccCCCCCcCEEEcCCC--cCChhhhHhhhccCCCcEEEccCCcCCCCCchhhccCCCCCcEEecccCccCC
Q 001313          200 KRLSRLNNLKVFDLSGN--LFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDN  269 (1102)
Q Consensus       200 ~~l~~l~~L~~L~Ls~n--~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~  269 (1102)
                      ..+-.+++|++|.++.|  ++.+.++.....+++|++|++++|++...-....+..+.+|..|++..|..+.
T Consensus        59 ~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen   59 TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN  130 (260)
T ss_pred             ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc
Confidence            34555666666666666  44444444445557777777777776532223355666777788887776553

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.74  E-value=0.00059  Score=81.32  Aligned_cols=14  Identities=43%  Similarity=0.489  Sum_probs=9.4

Q ss_pred             cCCCCcEEecccCc
Q 001313          358 SMPSIQYLSLSNSS  371 (1102)
Q Consensus       358 ~l~~L~~L~L~~~~  371 (1102)
                      .+++++.+.+..+.
T Consensus       360 ~~~~l~~~~l~~~~  373 (482)
T KOG1947|consen  360 SCPKLTDLSLSYCG  373 (482)
T ss_pred             cCCCcchhhhhhhh
Confidence            36777777776665

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.65  E-value=0.00014  Score=73.40  Aligned_cols=101  Identities=26%  Similarity=0.317  Sum_probs=58.0

Q ss_pred             CCCCcEEeCCCCcCCcchhHhhhcCCCcCEEEcCCCcccCCCChhhhccCCCCcEEEcCCCcCCcccccCCccccCCCCC
Q 001313          128 LSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNN  207 (1102)
Q Consensus       128 l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~  207 (1102)
                      +.+.+.|+.-||.+++  ..-..+++.|++|.||-|+|+.   ...+..|++|++|+|..|.|..+..   ...+.++++
T Consensus        18 l~~vkKLNcwg~~L~D--Isic~kMp~lEVLsLSvNkIss---L~pl~rCtrLkElYLRkN~I~sldE---L~YLknlps   89 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDD--ISICEKMPLLEVLSLSVNKISS---LAPLQRCTRLKELYLRKNCIESLDE---LEYLKNLPS   89 (388)
T ss_pred             HHHhhhhcccCCCccH--HHHHHhcccceeEEeecccccc---chhHHHHHHHHHHHHHhcccccHHH---HHHHhcCch
Confidence            4455566666666554  2334556666666666666653   2456666666666666666655532   244566777


Q ss_pred             cCEEEcCCCcCChhhh-----HhhhccCCCcEEE
Q 001313          208 LKVFDLSGNLFNNSIL-----SSLARLSSLRSLL  236 (1102)
Q Consensus       208 L~~L~Ls~n~l~~~~~-----~~l~~l~~L~~L~  236 (1102)
                      |+.|.|..|.-.+..+     ..+.-+++|+.||
T Consensus        90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            7777777665443222     2344556666654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.52  E-value=0.00062  Score=81.15  Aligned_cols=67  Identities=24%  Similarity=0.203  Sum_probs=33.5

Q ss_pred             cCCCCCcEEecccCc-cCCcchhhhhccccccceeccccccccCchhhhhhcCCCCCCCEEeCCCCCc
Q 001313          252 DSLSNLEELDMSYNE-IDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNF  318 (1102)
Q Consensus       252 ~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~  318 (1102)
                      ..+++|+.|+++++. +++.........++.|+.|.+..|...+...+......++.|++|++++|..
T Consensus       240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            334555555555555 4444444444444555555544443323334444445566666666666554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.31  E-value=0.00036  Score=70.46  Aligned_cols=101  Identities=32%  Similarity=0.362  Sum_probs=69.8

Q ss_pred             CCCcCEEEcCCCcccCCCChhhhccCCCCcEEEcCCCcCCcccccCCccccCCCCCcCEEEcCCCcCChh-hhHhhhccC
Q 001313          152 LSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNS-ILSSLARLS  230 (1102)
Q Consensus       152 l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~  230 (1102)
                      +.+.+.|+.-+|.+.   ++.-..+++.|++|.|+-|.|+..      ..+..|++|++|+|..|.|.+. -..-+.+++
T Consensus        18 l~~vkKLNcwg~~L~---DIsic~kMp~lEVLsLSvNkIssL------~pl~rCtrLkElYLRkN~I~sldEL~YLknlp   88 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLD---DISICEKMPLLEVLSLSVNKISSL------APLQRCTRLKELYLRKNCIESLDELEYLKNLP   88 (388)
T ss_pred             HHHhhhhcccCCCcc---HHHHHHhcccceeEEeeccccccc------hhHHHHHHHHHHHHHhcccccHHHHHHHhcCc
Confidence            556677888888776   345567788888888888888777      4577888888888888877652 123466777


Q ss_pred             CCcEEEccCCcCCCCCc----hhhccCCCCCcEEe
Q 001313          231 SLRSLLLYDNRLEGSID----VKEFDSLSNLEELD  261 (1102)
Q Consensus       231 ~L~~L~L~~n~l~~~~~----~~~l~~l~~L~~L~  261 (1102)
                      +|+.|-|..|.-.|..+    ...+.-+++|++||
T Consensus        89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   89 SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            88888777776554433    22355667777665

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.00  E-value=0.0098  Score=35.80  Aligned_cols=18  Identities=50%  Similarity=0.694  Sum_probs=8.8

Q ss_pred             CCEEeCCCCcCcccCchhh
Q 001313          955 IESLDLSYNKLSWKIPYQL  973 (1102)
Q Consensus       955 L~~L~Ls~N~l~~~~p~~l  973 (1102)
                      |+.|||++|+|+ .+|.+|
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            445555555555 444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.92  E-value=0.0072  Score=36.38  Aligned_cols=20  Identities=60%  Similarity=0.908  Sum_probs=11.6

Q ss_pred             CCEEECCCCCCCCCCcccccC
Q 001313          931 IQTLNLSHNNLAGPIPSTFSN  951 (1102)
Q Consensus       931 L~~L~Ls~N~l~~~~p~~~~~  951 (1102)
                      |++|||++|+|+ .+|..|++
T Consensus         2 L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTTT
T ss_pred             ccEEECCCCcCE-eCChhhcC
Confidence            556666666666 55555544

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.70  E-value=0.0011  Score=76.28  Aligned_cols=174  Identities=26%  Similarity=0.277  Sum_probs=75.8

Q ss_pred             cCCCCCCCCEEeCCCCCCCCcccchhhhhhcCC-CCCcEEeCCCCcCCc----chhHhhhcCCCcCEEEcCCCcccCC--
Q 001313           96 LFTPFQQLESLDLRDNDIAGCVENEGLERLSRL-SNLKMLNLVGNLFNN----SILSSLARLSSLTSLDLSANRLKGS--  168 (1102)
Q Consensus        96 ~~~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~l-~~L~~L~Ls~n~~~~----~~~~~l~~l~~L~~L~Ls~n~l~~~--  168 (1102)
                      .+....+|+.|++++|.+.+.........+... ..|++|++..|.+++    .+...+....+++.+|++.|.+...  
T Consensus       110 ~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~  189 (478)
T KOG4308|consen  110 ALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGL  189 (478)
T ss_pred             HhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhh
Confidence            344555666666666665522221112222222 445555655555442    3344455556666666666654211  


Q ss_pred             -CChhhhc----cCCCCcEEEcCCCcCCcccccCCccccCCCCC-cCEEEcCCCcCChhh----hHhhhcc-CCCcEEEc
Q 001313          169 -IDIKELD----SLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNN-LKVFDLSGNLFNNSI----LSSLARL-SSLRSLLL  237 (1102)
Q Consensus       169 -~~~~~l~----~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~-L~~L~Ls~n~l~~~~----~~~l~~l-~~L~~L~L  237 (1102)
                       .....+.    ...++++|++++|.++..........+...+. ++.|++..|.+.+..    ...+..+ ..++++++
T Consensus       190 ~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l  269 (478)
T KOG4308|consen  190 LVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDL  269 (478)
T ss_pred             HHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhh
Confidence             0011112    24455555555555543322222223333333 444555555554321    1222233 34455555


Q ss_pred             cCCcCCCCCc---hhhccCCCCCcEEecccCccCC
Q 001313          238 YDNRLEGSID---VKEFDSLSNLEELDMSYNEIDN  269 (1102)
Q Consensus       238 ~~n~l~~~~~---~~~l~~l~~L~~L~L~~n~l~~  269 (1102)
                      +.|.+...-.   .+.+..++.++++.++.|.+.+
T Consensus       270 ~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  270 SRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             hcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            5555442111   1223344455555555555443

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.57  E-value=0.0015  Score=75.27  Aligned_cols=89  Identities=24%  Similarity=0.234  Sum_probs=49.0

Q ss_pred             CCEEeCCCCCCCCcccchhhhhhcCCCCCcEEeCCCCcCCcchhHhhh----cC-CCcCEEEcCCCcccCCCC---hhhh
Q 001313          103 LESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLA----RL-SSLTSLDLSANRLKGSID---IKEL  174 (1102)
Q Consensus       103 L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~----~l-~~L~~L~Ls~n~l~~~~~---~~~l  174 (1102)
                      ++.|.|.+|.+...........+...++|..|++++|.+.+.-...++    .. ..|++|++..|.+++...   ...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            677777777776654444445566677777777777776643222222    12 445566666666553311   1233


Q ss_pred             ccCCCCcEEEcCCCcCC
Q 001313          175 DSLRDLEKLNIGRNMID  191 (1102)
Q Consensus       175 ~~l~~L~~L~Ls~n~~~  191 (1102)
                      .....++.++++.|.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~  185 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLI  185 (478)
T ss_pred             hcccchhHHHHHhcccc
Confidence            34555555666555553

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.95  E-value=0.11  Score=50.95  Aligned_cols=80  Identities=31%  Similarity=0.412  Sum_probs=45.0

Q ss_pred             CCEEeCCCCCCCCcccchhhhhhcCCCCCcEEeCCCCcC-CcchhHhhhc-CCCcCEEEcCCCcccCCCChhhhccCCCC
Q 001313          103 LESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLF-NNSILSSLAR-LSSLTSLDLSANRLKGSIDIKELDSLRDL  180 (1102)
Q Consensus       103 L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~-~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L  180 (1102)
                      ++.+|-+++.|.    ..|++.+.+++.++.|.+.+|.- .+...+.+++ .++|+.|++++|.-........+.++++|
T Consensus       103 IeaVDAsds~I~----~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknL  178 (221)
T KOG3864|consen  103 IEAVDASDSSIM----YEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNL  178 (221)
T ss_pred             EEEEecCCchHH----HHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhh
Confidence            455666666554    23667777788888888877753 3323333433 36777777777743223233444455555


Q ss_pred             cEEEcC
Q 001313          181 EKLNIG  186 (1102)
Q Consensus       181 ~~L~Ls  186 (1102)
                      +.|.+.
T Consensus       179 r~L~l~  184 (221)
T KOG3864|consen  179 RRLHLY  184 (221)
T ss_pred             HHHHhc
Confidence            554443

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=89.51  E-value=0.23  Score=27.61  Aligned_cols=13  Identities=69%  Similarity=0.787  Sum_probs=5.3

Q ss_pred             CCcEEEccCcccc
Q 001313          612 FLQFLDLSNNQLT  624 (1102)
Q Consensus       612 ~L~~L~Ls~n~l~  624 (1102)
                      +|++|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4555555555554

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.32  E-value=0.013  Score=58.10  Aligned_cols=82  Identities=22%  Similarity=0.221  Sum_probs=71.6

Q ss_pred             CCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcc
Q 001313          906 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA  985 (1102)
Q Consensus       906 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls  985 (1102)
                      ..+.||++.|++.. ....|.-++.|..||+|.|++. ..|..++.+..+..+++..|.++ ..|.++...+.++++++-
T Consensus        43 r~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k  119 (326)
T KOG0473|consen   43 RVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK  119 (326)
T ss_pred             eeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence            46789999999873 4556788889999999999998 78999999999999999999998 789999999999999999


Q ss_pred             cCcCc
Q 001313          986 YNNLS  990 (1102)
Q Consensus       986 ~N~l~  990 (1102)
                      .|++.
T Consensus       120 ~~~~~  124 (326)
T KOG0473|consen  120 KTEFF  124 (326)
T ss_pred             cCcch
Confidence            98864

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.48  E-value=0.38  Score=30.26  Aligned_cols=16  Identities=31%  Similarity=0.551  Sum_probs=7.6

Q ss_pred             CcCCEEECCCCCCCCC
Q 001313          929 TKIQTLNLSHNNLAGP  944 (1102)
Q Consensus       929 ~~L~~L~Ls~N~l~~~  944 (1102)
                      ++|+.|+|++|+|+..
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00369        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            3445555555555533

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.48  E-value=0.38  Score=30.26  Aligned_cols=16  Identities=31%  Similarity=0.551  Sum_probs=7.6

Q ss_pred             CcCCEEECCCCCCCCC
Q 001313          929 TKIQTLNLSHNNLAGP  944 (1102)
Q Consensus       929 ~~L~~L~Ls~N~l~~~  944 (1102)
                      ++|+.|+|++|+|+..
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00370        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            3445555555555533

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.09  E-value=0.46  Score=29.88  Aligned_cols=22  Identities=45%  Similarity=0.551  Sum_probs=16.2

Q ss_pred             CCCCcEEEccCcccccccchhHh
Q 001313          610 MNFLQFLDLSNNQLTGEIPEHLA  632 (1102)
Q Consensus       610 l~~L~~L~Ls~n~l~~~ip~~~~  632 (1102)
                      +++|++|+|++|+++ .+|...|
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHc
Confidence            356788888888887 7777665

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.09  E-value=0.46  Score=29.88  Aligned_cols=22  Identities=45%  Similarity=0.551  Sum_probs=16.2

Q ss_pred             CCCCcEEEccCcccccccchhHh
Q 001313          610 MNFLQFLDLSNNQLTGEIPEHLA  632 (1102)
Q Consensus       610 l~~L~~L~Ls~n~l~~~ip~~~~  632 (1102)
                      +++|++|+|++|+++ .+|...|
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHc
Confidence            356788888888887 7777665

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.60  E-value=0.23  Score=48.69  Aligned_cols=35  Identities=40%  Similarity=0.565  Sum_probs=20.8

Q ss_pred             CCCcCEEEcCCC-cCChhhhHhhhccCCCcEEEccC
Q 001313          205 LNNLKVFDLSGN-LFNNSILSSLARLSSLRSLLLYD  239 (1102)
Q Consensus       205 l~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~L~~  239 (1102)
                      .++|+.|++++| +||+.....+.++++|+.|.+.+
T Consensus       150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~  185 (221)
T KOG3864|consen  150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD  185 (221)
T ss_pred             ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence            356666666655 45555555666666666666554

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=84.64  E-value=0.62  Score=28.62  Aligned_cols=22  Identities=41%  Similarity=0.478  Sum_probs=12.4

Q ss_pred             CCcCEEEcCCCcCChhhhHhhh
Q 001313          206 NNLKVFDLSGNLFNNSILSSLA  227 (1102)
Q Consensus       206 ~~L~~L~Ls~n~l~~~~~~~l~  227 (1102)
                      ++|++|++++|++++.....++
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~l~   23 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASALA   23 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHHhC
Confidence            5667777777776665555443

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	1102
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		7e-47
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		7e-47
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		5e-13
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-05

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  186 bits (472), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 170/559 (30%), Positives = 254/559 (45%), Gaps = 72/559 (12%)
Query: 508  FLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLL 567
            FL +   L+++ +S  K++ +F +  +   T+L+ L++ ++  VGP  +P    K L+ L
Sbjct: 215  FLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGP--IPPLPLKSLQYL 271
Query: 568  DVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFG------------------- 608
             +++N F G IP  +      LT  ++S N   G++P  FG                   
Sbjct: 272  SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 331
Query: 609  ------NMNFLQFLDLSNNQLTGEIPEHLAMGCVXXXXXXXXXXXXEGHMF---SRNFNL 659
                   M  L+ LDLS N+ +GE+PE L                  G +     +N   
Sbjct: 332  PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 391
Query: 660  TNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNH 719
            T L  L L+ N F G+IP +LS CS L  L LS N LSG IP  LG+L+ LR + +  N 
Sbjct: 392  T-LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 450
Query: 720  IEGPIPLEFCQLRILQILDISDNNISGSLPSCY-DFVCIEQVHLSKNMLHGQLKE--GTF 776
            +EG IP E   ++ L+ L +  N+++G +PS   +   +  + LS N L G++ +  G  
Sbjct: 451  LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 510
Query: 777  FNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIXXXXXXXXXXXXXX 836
             N   L IL LS N  +GNIP  +     L +L L  N   G +P               
Sbjct: 511  EN---LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFI 567
Query: 837  XXXXHGHIPS------CFDNTTL-------HERYNNGSSLQPFETSFVIMGGMDVDPKKQ 883
                + +I +      C     L        E+ N  S+  P   +  + GG        
Sbjct: 568  AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH------- 620
Query: 884  ILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAG 943
                      S T+   G     +  LD+S N L G+IP +IG++  +  LNL HN+++G
Sbjct: 621  ---------TSPTFDNNGS----MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 667
Query: 944  PIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATF 1003
             IP    +LR +  LDLS NKL  +IP  +  L  L    ++ NNLSG IPE   QF TF
Sbjct: 668  SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFETF 726
Query: 1004 NESSYEGNPFLCGPPLPIC 1022
              + +  NP LCG PLP C
Sbjct: 727  PPAKFLNNPGLCGYPLPRC 745

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  186 bits (471), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 170/559 (30%), Positives = 254/559 (45%), Gaps = 72/559 (12%)
Query: 508  FLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLL 567
            FL +   L+++ +S  K++ +F +  +   T+L+ L++ ++  VGP  +P    K L+ L
Sbjct: 218  FLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGP--IPPLPLKSLQYL 274
Query: 568  DVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFG------------------- 608
             +++N F G IP  +      LT  ++S N   G++P  FG                   
Sbjct: 275  SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334
Query: 609  ------NMNFLQFLDLSNNQLTGEIPEHLAMGCVXXXXXXXXXXXXEGHMF---SRNFNL 659
                   M  L+ LDLS N+ +GE+PE L                  G +     +N   
Sbjct: 335  PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394
Query: 660  TNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNH 719
            T L  L L+ N F G+IP +LS CS L  L LS N LSG IP  LG+L+ LR + +  N 
Sbjct: 395  T-LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453
Query: 720  IEGPIPLEFCQLRILQILDISDNNISGSLPS-CYDFVCIEQVHLSKNMLHGQLKE--GTF 776
            +EG IP E   ++ L+ L +  N+++G +PS   +   +  + LS N L G++ +  G  
Sbjct: 454  LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Query: 777  FNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIXXXXXXXXXXXXXX 836
             N   L IL LS N  +GNIP  +     L +L L  N   G +P               
Sbjct: 514  EN---LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFI 570
Query: 837  XXXXHGHIPS------CFDNTTL-------HERYNNGSSLQPFETSFVIMGGMDVDPKKQ 883
                + +I +      C     L        E+ N  S+  P   +  + GG        
Sbjct: 571  AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH------- 623
Query: 884  ILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAG 943
                      S T+   G     +  LD+S N L G+IP +IG++  +  LNL HN+++G
Sbjct: 624  ---------TSPTFDNNGS----MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 670
Query: 944  PIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATF 1003
             IP    +LR +  LDLS NKL  +IP  +  L  L    ++ NNLSG IPE   QF TF
Sbjct: 671  SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFETF 729
Query: 1004 NESSYEGNPFLCGPPLPIC 1022
              + +  NP LCG PLP C
Sbjct: 730  PPAKFLNNPGLCGYPLPRC 748

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 73.9 bits (180), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 104/257 (40%), Gaps = 55/257 (21%)
Query: 790  NHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGHIPSCFD 849
            N+L G IP  +  L+QL YL + H N+ G +P                            
Sbjct: 87   NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL------------------- 127
Query: 850  NTTLHERYNN-GSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLS 908
              TL   YN    +L P  +S   + G+  D  +         + +I  +Y G    L +
Sbjct: 128  -VTLDFSYNALSGTLPPSISSLPNLVGITFDGNR--------ISGAIPDSY-GSFSKLFT 177
Query: 909  GLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSN----------------- 951
             + +S NRL G IPP   NL  +  ++LS N L G     F +                 
Sbjct: 178  SMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD 236
Query: 952  ------LRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNE 1005
                   +N+  LDL  N++   +P  L +L  L   +V++NNL G+IP+       F+ 
Sbjct: 237  LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDV 295
Query: 1006 SSYEGNPFLCGPPLPIC 1022
            S+Y  N  LCG PLP C
Sbjct: 296  SAYANNKCLCGSPLPAC 312

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 921  IPPQIGNLTKIQTLNLSH-NNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTL 979
            IP  + NL  +  L +   NNL GPIP   + L  +  L +++  +S  IP  L ++ TL
Sbjct: 68   IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 980  AVFSVAYNNLSGKIPERAAQFATFNESSYEGN 1011
                 +YN LSG +P   +        +++GN
Sbjct: 128  VTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	1102
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-159
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-83
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-78
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-73
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-54
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-45
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-66
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-58
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-55
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-54
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-46
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-44
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-63
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-61
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-61
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-56
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-56
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-54
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-62
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-56
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-51
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-50
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-41
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-31
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-61
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-56
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-53
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-36
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-60
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-52
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-45
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-44
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-42
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-40
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-57
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-54
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-49
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-47
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-46
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-34
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-33
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-50
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-46
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-44
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-35
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-44
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-42
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-41
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-36
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-33
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-30
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-40
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-38
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-37
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-37
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-36
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-36
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-34
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-39
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-39
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-39
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-36
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-35
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-35
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-35
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-35
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-34
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-32
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-39
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-38
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-33
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-33
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-33
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-32
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-30
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-30
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-30
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-26
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-25
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-37
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-29
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-22
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-32
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-31
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-30
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-32
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-32
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-30
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-28
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-28
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-25
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-22
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-31
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-28
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-28
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-23
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-19
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-29
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-28
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-28
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-26
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-22
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-21
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-27
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-27
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-26
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-24
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-19
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-26
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-26
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-23
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-23
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-23
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-19
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-26
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-26
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-24
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-23
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-22
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-25
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-23
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-24
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-24
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-23
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-22
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-17
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-17
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-24
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-24
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-23
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-23
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-23
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-21
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-19
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-18
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-18
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-23
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-23
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-21
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-23
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-23
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-23
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-22
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-20
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-19
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-23
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-22
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-20
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-20
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-20
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-20
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-19
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-16
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-15
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-15
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-15
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-15
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-13
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-12
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-12
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-13
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	8e-10
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-13
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-11
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-11
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-12
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-12
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-10
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	8e-09
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-12
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	5e-10
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	9e-10
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	9e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	8e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	8e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	8e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	8e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	8e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	9e-05

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  491 bits (1266), Expect = e-159
 Identities = 208/784 (26%), Positives = 336/784 (42%), Gaps = 95/784 (12%)

Query: 282  LSYLHLLRVGIR-DGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYM 340
            ++ + L    +    S +  S+ S   L +L LS ++   +V+    GF    SL  L +
Sbjct: 52   VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS----GFKCSASLTSLDL 107

Query: 341  DDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLR 400
                ++   + L  +G S   +++L++S++++    +    G   L  L+ L ++ N + 
Sbjct: 108  SRNSLSGPVTTLTSLG-SCSGLKFLNVSSNTLDFPGKV--SGGLKLNSLEVLDLSANSIS 164

Query: 401  GSLPWCLA---NMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPL 457
            G+             L+ L +S N++ G +    +    ++E L +S N+F   I    L
Sbjct: 165  GANVVGWVLSDGCGELKHLAISGNKISGDV---DVSRCVNLEFLDVSSNNFSTGIPF--L 219

Query: 458  FNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEY 517
             + S L+  D   N+++ +                              + +    +L+ 
Sbjct: 220  GDCSALQHLDISGNKLSGDF----------------------------SRAISTCTELKL 251

Query: 518  VRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPI-HSHKQLRLLDVSKNNFQG 576
            + +S  +     P   L     L+ LSL  +   G     +  +   L  LD+S N+F G
Sbjct: 252  LNISSNQFVGPIPPLPL---KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 308

Query: 577  HIPLEIGDILSRLTVFNISMNALDGSIP-SSFGNMNFLQFLDLSNNQLTGEIPEHLAMGC 635
             +P   G   S L    +S N   G +P  +   M  L+ LDLS N+ +GE+PE L    
Sbjct: 309  AVPPFFGS-CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 367

Query: 636  VSLRSLALSNNNLEGHMFSR--NFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSN 693
             SL +L LS+NN  G +           L  L L+ N F G+IP +LS CS L  L LS 
Sbjct: 368  ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 427

Query: 694  NSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYD 753
            N LSG IP  LG+L+ LR + +  N +EG IP E   ++ L+ L +  N+++G +PS   
Sbjct: 428  NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG-- 485

Query: 754  FVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAH 813
                                    NC  L  + LS N L G IP  +  L  L+ L L++
Sbjct: 486  ----------------------LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523

Query: 814  NNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFE------ 867
            N+  G +P +L     L  LDL+ N  +G IP+     +     N  +  +         
Sbjct: 524  NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM 583

Query: 868  TSFVIMGGMDVDPKKQILESFDFTTKSITY-----TYQGRVP------SLLSGLDLSCNR 916
                   G  ++ +    E  +  +           Y G           +  LD+S N 
Sbjct: 584  KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM 643

Query: 917  LIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVEL 976
            L G+IP +IG++  +  LNL HN+++G IP    +LR +  LDLS NKL  +IP  +  L
Sbjct: 644  LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703

Query: 977  NTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICISPTTMPEASPSNE 1036
              L    ++ NNLSG IPE   QF TF  + +  NP LCG PLP C  P+     +    
Sbjct: 704  TMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLPRC-DPSNADGYAHHQR 761

Query: 1037 GDNN 1040
              ++
Sbjct: 762  SHHH 765

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  286 bits (734), Expect = 3e-83
 Identities = 157/689 (22%), Positives = 260/689 (37%), Gaps = 142/689 (20%)

Query: 67  VSCNNTMGRVVVLDLSQTHRGEYWYLNASL-FTPFQQLESLDLRDNDIAGCVENEGLERL 125
              ++  G +  L +S         ++  +  +    LE LD+  N+ +      G+  L
Sbjct: 171 WVLSDGCGELKHLAISGNK------ISGDVDVSRCVNLEFLDVSSNNFST-----GIPFL 219

Query: 126 SRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNI 185
              S L+ L++ GN  +     +++  + L  L++S+N+  G I       L+ L+ L++
Sbjct: 220 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP---PLPLKSLQYLSL 276

Query: 186 GRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGS 245
             N   KF            + L   DLSGN F  ++       S L SL L  N   G 
Sbjct: 277 AEN---KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333

Query: 246 IDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSF 305
           + +     +  L+ LD+S+NE    E+P     L  LS                      
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSG-ELP---ESLTNLS---------------------- 367

Query: 306 PSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYL 365
            SL TLDLS NNF+                                    G  +P++   
Sbjct: 368 ASLLTLDLSSNNFS------------------------------------GPILPNLCQN 391

Query: 366 SLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIG 425
             +                    LQEL++ +N   G +P  L+N + L  L +S N L G
Sbjct: 392 PKNT-------------------LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432

Query: 426 SISSSPLIHLTSIEDLILSDNHFQ--IPISLEPLFNHSRLKIFDAENNEINAEIIESHSL 483
           +I SS L  L+ + DL L  N  +  IP     L     L+    + N++  EI      
Sbjct: 433 TIPSS-LGSLSKLRDLKLWLNMLEGEIPQE---LMYVKTLETLILDFNDLTGEI------ 482

Query: 484 TTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQL 543
                                 P  L N  +L ++ LS+ ++  E P W +     L  L
Sbjct: 483 ----------------------PSGLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAIL 519

Query: 544 SLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSI 603
            L N+S  G     +   + L  LD++ N F G IP  +     ++     + N + G  
Sbjct: 520 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI-----AANFIAGKR 574

Query: 604 PSSFGNMNFLQFLDLSNN--QLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTN 661
                N    +    + N  +  G   E L     +     +++    GH      N  +
Sbjct: 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR-LSTRNPCNITSRVYGGHTSPTFDNNGS 633

Query: 662 LIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIE 721
           +++L +  N   G IP+ +     L  L L +N +SG IP  +G+L  L  + +  N ++
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693

Query: 722 GPIPLEFCQLRILQILDISDNNISGSLPS 750
           G IP     L +L  +D+S+NN+SG +P 
Sbjct: 694 GRIPQAMSALTMLTEIDLSNNNLSGPIPE 722

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 52.2 bits (126), Expect = 8e-07
 Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 4/72 (5%)

Query: 927 NLTKIQTLNLSHNNLA---GPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFS 983
              K+ +++LS   L      + S+  +L  +ESL LS + ++  +        +L    
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLD 106

Query: 984 VAYNNLSGKIPE 995
           ++ N+LSG +  
Sbjct: 107 LSRNSLSGPVTT 118

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  269 bits (691), Expect = 4e-78
 Identities = 127/713 (17%), Positives = 226/713 (31%), Gaps = 116/713 (16%)

Query: 307 SLNTLDLSYNNFTETVTTTTQGFPH--FKSLKELYMDDARIA--LNTSFLQIIGESMPSI 362
           S    D S+   T+         P     ++  L +   ++      +F          +
Sbjct: 5   SHEVADCSHLKLTQ--------VPDDLPTNITVLNLTHNQLRRLPAANF-----TRYSQL 51

Query: 363 QYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQ 422
             L +  +++S       +    L  L+ L++  N+L        A  T+L  L + SN 
Sbjct: 52  TSLDVGFNTISKLE---PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 108

Query: 423 LIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHS 482
            I  I ++P +   ++  L LS N       L        L+     NN+I   +     
Sbjct: 109 -IQKIKNNPFVKQKNLITLDLSHNGLSS-TKLGTQVQLENLQELLLSNNKIQ-ALKSEEL 165

Query: 483 LTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQ 542
               N  L+ L LSS        P   +    L  + L+++++       L         
Sbjct: 166 DIFANSSLKKLELSSNQIKEF-SPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLE------ 218

Query: 543 LSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDI-LSRLTVFNISMNALDG 601
                            ++  +R L +S +            +  + LT+ ++S N L+ 
Sbjct: 219 ----------------LANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV 262

Query: 602 SIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNF---- 657
               SF  +  L++  L  N +       L  G  ++R L L  +  +  +   +     
Sbjct: 263 VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH-GLFNVRYLNLKRSFTKQSISLASLPKID 321

Query: 658 -----NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGK--IPRWLGNL--T 708
                 L  L  L +E N   G      +   +L+ L LSN+  S +        +L  +
Sbjct: 322 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 381

Query: 709 VLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLH 768
            L  + + KN I       F  L  L++LD+  N I   L                    
Sbjct: 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG------------------ 423

Query: 769 GQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEG--EVPIQLCR 826
                  +     +  + LSYN       +    +  L  L+L    L+     P     
Sbjct: 424 -----QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP 478

Query: 827 LNQLQLLDLSNNNLHGHIPSCFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKK 882
           L  L +LDLSNNN+        +       L  ++NN                       
Sbjct: 479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN----------------------- 515

Query: 883 QILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLA 942
             L             Y  +  S L  L+L  N           +L +++ ++L  NNL 
Sbjct: 516 --LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN 573

Query: 943 GPIPSTFSNLRNIESLDLSYNKLSWKIPYQL-VELNTLAVFSVAYNNLSGKIP 994
               S F+N  +++SL+L  N ++             L    + +N       
Sbjct: 574 TLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  254 bits (652), Expect = 8e-73
 Identities = 123/669 (18%), Positives = 229/669 (34%), Gaps = 73/669 (10%)

Query: 100 FQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLD 159
              +  L+L  N +            +R S L  L++  N  +        +L  L  L+
Sbjct: 24  PTNITVLNLTHNQLRRLPAAN----FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLN 79

Query: 160 LSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFN 219
           L  N L    D K      +L +L++  N I K           +  NL   DLS N  +
Sbjct: 80  LQHNELSQLSD-KTFAFCTNLTELHLMSNSIQKI----KNNPFVKQKNLITLDLSHNGLS 134

Query: 220 NSILSSLARLSSLRSLLLYDNRLEGSI-DVKEFDSLSNLEELDMSYNEIDNFEVPQACSG 278
           ++ L +  +L +L+ LLL +N+++    +  +  + S+L++L++S N+I  F  P     
Sbjct: 135 STKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFS-PGCFHA 193

Query: 279 LRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKEL 338
           +                            L  L L+      ++T          S++ L
Sbjct: 194 I--------------------------GRLFGLFLNNVQLGPSLTEKLCLELANTSIRNL 227

Query: 339 YMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADND 398
            + +++++  TS    +G    ++  L LS ++++            L  L+   +  N+
Sbjct: 228 SLSNSQLS-TTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS---FAWLPQLEYFFLEYNN 283

Query: 399 LRGSLPWCLANMTSLRILDVSSNQLIGSIS--------SSPLIHLTSIEDLILSDNHFQI 450
           ++      L  + ++R L++  +    SIS              L  +E L + DN    
Sbjct: 284 IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343

Query: 451 PISLEPLFNHSRLKIFDAENNEINAEIIESHSLT-TPNFQLQSLLLSSGYRDGITFPKFL 509
            I          LK     N+  +   + + +     +  L  L L+      I      
Sbjct: 344 -IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI-ESDAF 401

Query: 510 YNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDV 569
                LE + L   ++ +E           + ++ L  +  +   R        L+ L +
Sbjct: 402 SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461

Query: 570 SKNNFQG--HIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEI 627
            +   +     P      L  LT+ ++S N +          +  L+ LDL +N L    
Sbjct: 462 RRVALKNVDSSPSPFQP-LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA--- 517

Query: 628 PEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQ 687
                          L  +   G        L++L  L LE N F     +       L+
Sbjct: 518 --------------RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK 563

Query: 688 GLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFC-QLRILQILDISDNNISG 746
            + L  N+L+        N   L+ + + KN I       F    R L  LD+  N    
Sbjct: 564 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623

Query: 747 SLPSCYDFV 755
           +  S   FV
Sbjct: 624 TCESIAWFV 632

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  201 bits (513), Expect = 2e-54
 Identities = 88/453 (19%), Positives = 158/453 (34%), Gaps = 50/453 (11%)

Query: 563 QLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQ 622
              + D S       +P    D+ + +TV N++ N L     ++F   + L  LD+  N 
Sbjct: 5   SHEVADCSHLKLT-QVP---DDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 623 LTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSK 682
           ++   PE                             L  L  L L+ N       ++ + 
Sbjct: 61  ISKLEPELCQ-------------------------KLPMLKVLNLQHNELSQLSDKTFAF 95

Query: 683 CSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDN 742
           C++L  L L +NS+             L  + +  N +         QL  LQ L +S+N
Sbjct: 96  CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN 155

Query: 743 NISGSLPSCYDFVC---IEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDR 799
            I        D      ++++ LS N +      G F     L  L L+   L  ++ ++
Sbjct: 156 KIQALKSEELDIFANSSLKKLELSSNQIKE-FSPGCFHAIGRLFGLFLNNVQLGPSLTEK 214

Query: 800 V---DGLSQLSYLILAHNNLEGEVP--IQLCRLNQLQLLDLSNNNLHGHIPSCFDN---- 850
           +      + +  L L+++ L           +   L +LDLS NNL+      F      
Sbjct: 215 LCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQL 274

Query: 851 TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSL--LS 908
                 YNN   L     S   +  +     K+       +  S+          L  L 
Sbjct: 275 EYFFLEYNNIQHLFS--HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE 332

Query: 909 GLDLSCNRLIGHIPPQIGNLTKIQTLNLSHN--NLAGPIPSTFSNLRN--IESLDLSYNK 964
            L++  N + G        L  ++ L+LS++  +L      TF +L +  +  L+L+ NK
Sbjct: 333 HLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK 392

Query: 965 LSWKIPYQLVELNTLAVFSVAYNNLSGKIPERA 997
           +S         L  L V  +  N +  ++  + 
Sbjct: 393 ISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  172 bits (439), Expect = 5e-45
 Identities = 69/395 (17%), Positives = 135/395 (34%), Gaps = 24/395 (6%)

Query: 92  LNASLFTPFQQLESLDLRDNDIAGCVEN--EGLERLSRL---SNLKMLNLVGNLFNNSIL 146
           +    F    QLE   L  N+I     +   GL  +  L    +    ++          
Sbjct: 263 VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDD 322

Query: 147 SSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLN 206
            S   L  L  L++  N + G I       L +L+ L++  +      ++         +
Sbjct: 323 FSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 381

Query: 207 NLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNE 266
            L + +L+ N  +     + + L  L  L L  N +   +  +E+  L N+ E+ +SYN+
Sbjct: 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441

Query: 267 IDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTT 326
                   + + +  L  L L RV +++            +L  LDLS NN         
Sbjct: 442 YLQLT-RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA---NIND 497

Query: 327 QGFPHFKSLKELYMDDARIA-----LNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQ 381
                 + L+ L +    +A      N        + +  +  L+L +    N    +  
Sbjct: 498 DMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES----NGFDEIPV 553

Query: 382 GLCP-LVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIED 440
            +   L  L+ + +  N+L         N  SL+ L++  N +             ++ +
Sbjct: 554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTE 613

Query: 441 LILSDNHFQIPISLEPLF----NHSRLKIFDAENN 471
           L +  N F         F    N +   I +  ++
Sbjct: 614 LDMRFNPFDCTCESIAWFVNWINETHTNIPELSSH 648

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 73.5 bits (181), Expect = 2e-13
 Identities = 35/172 (20%), Positives = 55/172 (31%), Gaps = 35/172 (20%)

Query: 825 CRLNQLQLLDLSNNNLHGHIPSCFDNTT-LHERYNNGSSLQPFETSFVIMGGMDVDPKKQ 883
           C ++  ++ D S+  L         N T L+  +N    L                    
Sbjct: 2   CTVS-HEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPA------------------ 42

Query: 884 ILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAG 943
              +F             R   L S LD+  N +    P     L  ++ LNL HN L+ 
Sbjct: 43  --ANF------------TRYSQLTS-LDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ 87

Query: 944 PIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPE 995
               TF+   N+  L L  N +        V+   L    +++N LS     
Sbjct: 88  LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG 139

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.3 bits (152), Expect = 6e-10
 Identities = 34/160 (21%), Positives = 59/160 (36%), Gaps = 8/160 (5%)

Query: 91  YLNASLFTPFQQLESLDLRDNDI----AGCVENEGLERLSRLSNLKMLNLVGNLFNNSIL 146
            +N  +    ++LE LDL+ N++            +  L  LS+L +LNL  N F+   +
Sbjct: 494 NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV 553

Query: 147 SSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLN 206
                L  L  +DL  N L         ++   L+ LN+ +N+I                
Sbjct: 554 EVFKDLFELKIIDLGLNNLNTLPA-SVFNNQVSLKSLNLQKNLITSVEKKVFGPAFR--- 609

Query: 207 NLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSI 246
           NL   D+  N F+ +  S    ++ +         L    
Sbjct: 610 NLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHY 649

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  235 bits (602), Expect = 2e-66
 Identities = 94/635 (14%), Positives = 176/635 (27%), Gaps = 124/635 (19%)

Query: 388 HLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSP---LIHLTSIEDLILS 444
            +  L +      G +P  +  +T L +L + S+    +        +    S E     
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141

Query: 445 DNHFQ-IPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGI 503
             H+Q   +  +P  + S L      ++     I +S  +T    +   +   S     +
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITL---KDTQIGQLSNNITFV 198

Query: 504 TFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQ 563
              K +     L    + +     E      EN       +           L   + K 
Sbjct: 199 --SKAVMRLTKLRQFYMGNSPFVAENICEAWEN------ENSEYAQQYKTEDLKWDNLKD 250

Query: 564 LRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNAL--------DGSIPSSFGNMNFLQF 615
           L  ++V        +P  +   L  + + N++ N          D    +       +Q 
Sbjct: 251 LTDVEVYNCPNLTKLPTFLKA-LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309

Query: 616 LDLSNNQL-TGEIPEHLAMGCVSLRSLALSNNNLEGHM--FSRNFNLTNLIWLQLEGNHF 672
           + +  N L T  +   L      L  L    N LEG +  F    +   L  L L  N  
Sbjct: 310 IYIGYNNLKTFPVETSLQ-KMKKLGMLECLYNQLEGKLPAFG---SEIKLASLNLAYNQI 365

Query: 673 VGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWL--GNLTVLRHIIMPKNHIEG-------P 723
                        ++ L  ++N L   IP      +++V+  I    N I         P
Sbjct: 366 TEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP 424

Query: 724 IPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLM 783
           +     +   +  +++S+N IS                              F     L 
Sbjct: 425 LDPTPFKGINVSSINLSNNQISKFPKE------------------------LFSTGSPLS 460

Query: 784 ILDLSYNHLNG-------NIPDRVDGLSQLSYLILAHNNLEG-EVPIQLCRLNQLQLLDL 835
            ++L  N L         +  +       L+ + L  N L       +   L  L  +DL
Sbjct: 461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDL 520

Query: 836 SNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSI 895
           S N+     P+            N S+L+ F                             
Sbjct: 521 SYNSFSK-FPTQP---------LNSSTLKGF----------------------------- 541

Query: 896 TYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNI 955
                     + +  D   NR +   P  I     +  L +  N++         N+   
Sbjct: 542 ---------GIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNI--- 589

Query: 956 ESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLS 990
             LD+  N         +       ++ + Y+   
Sbjct: 590 SVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  210 bits (537), Expect = 8e-58
 Identities = 81/581 (13%), Positives = 179/581 (30%), Gaps = 61/581 (10%)

Query: 301 SMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMP 360
           S+ S   +  L L     +  V            L+ L +      +N        + + 
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDA---IGQLTELEVLALGSHGEKVN--ERLFGPKGIS 130

Query: 361 SIQYLSLSNSSVSNNSRTLDQGLCPLV--HLQELHMADNDLRGSLPWCLANMTSLRILDV 418
           +            +  +T            L +  +  +  + S+            +  
Sbjct: 131 ANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQ 190

Query: 419 SSNQLIGSISSSPLIHLTSIEDLILSDNHF--QIPISLEPLFNHSRLKIFDAENNEINAE 476
            SN +   +S + ++ LT +    + ++ F  +         N    + +  E+ + +  
Sbjct: 191 LSNNI-TFVSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWD-- 246

Query: 477 IIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSH--IKMNEEFPNWL- 533
                +L      L  + + +        P FL    +++ + ++       E+  +   
Sbjct: 247 -----NLK----DLTDVEVYNCPNLT-KLPTFLKALPEMQLINVACNRGISGEQLKDDWQ 296

Query: 534 ----LENNTKLRQLSLVNDSL-VGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSR 588
                    K++ + +  ++L   P    +   K+L +L+   N  +G +P   G    +
Sbjct: 297 ALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS-EIK 354

Query: 589 LTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMG-CVSLRSLALSNNN 647
           L   N++ N +     +  G    ++ L  ++N+L   IP          + ++  S N 
Sbjct: 355 LASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNE 413

Query: 648 LEG-------HMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSG-- 698
           +          +    F   N+  + L  N       +  S  S L  + L  N L+   
Sbjct: 414 IGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIP 473

Query: 699 -----KIPRWLGNLTVLRHIIMPKNHIEG-PIPLEFCQLRILQILDISDNNIS------G 746
                       N  +L  I +  N +           L  L  +D+S N+ S       
Sbjct: 474 KNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPL 533

Query: 747 SLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQL 806
           +  +   F    Q     N    +  E     C +L  L +  N +   + +++     +
Sbjct: 534 NSSTLKGFGIRNQRDAQGNRTLREWPE-GITLCPSLTQLQIGSNDIRK-VNEKI--TPNI 589

Query: 807 SYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSC 847
           S L +  N         +C   +  +  L  +     I  C
Sbjct: 590 SVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ-DIRGC 629

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  202 bits (515), Expect = 6e-55
 Identities = 83/542 (15%), Positives = 161/542 (29%), Gaps = 98/542 (18%)

Query: 489 QLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWL---LENNTKLRQLSL 545
           ++  L L      G   P  +    +LE + L           +    +  N    Q   
Sbjct: 82  RVTGLSLEGFGASG-RVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQK 140

Query: 546 VNDSLVGPF--RLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSI 603
           +       F    P      L    ++ +  Q  I      I  + T      N +   +
Sbjct: 141 MRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR-ITLKDTQIGQLSNNI-TFV 198

Query: 604 PSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLI 663
             +   +  L+   + N+    E        C +  +              +  NL +L 
Sbjct: 199 SKAVMRLTKLRQFYMGNSPFVAENI------CEAWENENSEYAQQYKTEDLKWDNLKDLT 252

Query: 664 WLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSL--------SGKIPRWLGNLTVLRHIIM 715
            +++     + ++P  L     +Q + ++ N            +          ++ I +
Sbjct: 253 DVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYI 312

Query: 716 PKNHI-EGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEG 774
             N++   P+     +++ L +L+   N + G LP+                        
Sbjct: 313 GYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA------------------------ 348

Query: 775 TFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVP-IQLCRLNQLQLL 833
            F + + L  L+L+YN +     +      Q+  L  AHN L+          ++ +  +
Sbjct: 349 -FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAI 407

Query: 834 DLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTK 893
           D S N +       FD   L      G ++                       S + +  
Sbjct: 408 DFSYNEIGSVDGKNFDP--LDPTPFKGINVS----------------------SINLSNN 443

Query: 894 SITYTYQGRVPSLLSG------LDLSCNRL-------IGHIPPQIGNLTKIQTLNLSHNN 940
            I+         L S       ++L  N L       +        N   + +++L  N 
Sbjct: 444 QIS----KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK 499

Query: 941 LAG-PIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFS------VAYNNLSGKI 993
           L         + L  +  +DLSYN  S K P Q +  +TL  F          N    + 
Sbjct: 500 LTKLSDDFRATTLPYLVGIDLSYNSFS-KFPTQPLNSSTLKGFGIRNQRDAQGNRTLREW 558

Query: 994 PE 995
           PE
Sbjct: 559 PE 560

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  200 bits (510), Expect = 3e-54
 Identities = 58/470 (12%), Positives = 146/470 (31%), Gaps = 72/470 (15%)

Query: 558 IHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDG----SIPSSFGNMNFL 613
           ++S+ ++  L +      G +P  IG  L+ L V  +  +          P         
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQ-LTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 614 QFLDLSNNQLTGEIPEHLAMG-CVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHF 672
           +              ++        L    ++++  +  +   +        +    N+ 
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 673 VGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLR 732
              + +++ + + L+  ++ N+    +            +             L++  L+
Sbjct: 196 -TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY-----AQQYKTEDLKWDNLK 249

Query: 733 ILQILDISDNNISGSLPSC-YDFVCIEQVHLSKNMLHGQLKEGTFFNCLT-------LMI 784
            L  +++ +      LP+       ++ ++++ N      +    +  L        + I
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309

Query: 785 LDLSYNHL-NGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGH 843
           + + YN+L    +   +  + +L  L   +N LEG++P       +L  L+L+ N +   
Sbjct: 310 IYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEI 368

Query: 844 IPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITY----TY 899
             +    T                                 +E+  F    + Y      
Sbjct: 369 PANFCGFTEQ-------------------------------VENLSFAHNKLKYIPNIFD 397

Query: 900 QGRVPSLLSGLDLSCNRL-------IGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNL 952
              V  + + +D S N +          + P       + ++NLS+N ++      FS  
Sbjct: 398 AKSVSVMSA-IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTG 456

Query: 953 RNIESLDLSYNKLS-------WKIPYQLVELNTLAVFSVAYNNLSGKIPE 995
             + S++L  N L+                   L    + +N L+    +
Sbjct: 457 SPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDD 506

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  176 bits (447), Expect = 4e-46
 Identities = 56/418 (13%), Positives = 129/418 (30%), Gaps = 73/418 (17%)

Query: 592 FNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGH 651
           FN  ++        S  +   +  L L     +G +P+ +      L  LAL ++  + +
Sbjct: 62  FNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIG-QLTELEVLALGSHGEKVN 120

Query: 652 MFSRNF----NLTNLIWLQLEGNHFVGEIPQSLSK--CSSLQGLFLSNNSLSGKIPRWLG 705
                        +    Q    H+         +   S L    ++++     I +   
Sbjct: 121 ERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR 180

Query: 706 NLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKN 765
                  I    N+I   +     +L  L+   + ++                       
Sbjct: 181 ITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENI---------------- 223

Query: 766 MLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLC 825
                        C      +  Y         + D L  L+ + + +     ++P  L 
Sbjct: 224 -------------CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270

Query: 826 RLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQIL 885
            L ++QL++++ N             +  +  ++  +L                P  + +
Sbjct: 271 ALPEMQLINVACNRG----------ISGEQLKDDWQALADA-------------PVGEKI 307

Query: 886 ESFDFTTKSITYTYQGRVPSLLSG------LDLSCNRLIGHIPPQIGNLTKIQTLNLSHN 939
           +       ++       V + L        L+   N+L G   P  G+  K+ +LNL++N
Sbjct: 308 QIIYIGYNNLKT---FPVETSLQKMKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYN 363

Query: 940 NLAGPIPSTFSNLRNIESLDLSYNKLSWKIP--YQLVELNTLAVFSVAYNNLSGKIPE 995
            +     +       +E+L  ++NKL   IP  +    ++ ++    +YN +     +
Sbjct: 364 QITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  170 bits (432), Expect = 2e-44
 Identities = 89/682 (13%), Positives = 186/682 (27%), Gaps = 143/682 (20%)

Query: 34  ALLQLKLFFIDPYNYLLDWVDDEGATDC----------CQWER------------VSCNN 71
             L     +I  Y  L +  D     +             W              VS N+
Sbjct: 20  IKLSRTAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNS 79

Query: 72  TMGRVVVLDLSQTHRGEYWYLNASL---FTPFQQLESLDLRDNDIAGCVENEGLERLSRL 128
             GRV  L L           +  +        +LE L L  +         G + +S  
Sbjct: 80  -NGRVTGLSLEGFG------ASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISAN 132

Query: 129 SNLKMLNLVGNLFNNSILSSLARL--SSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIG 186
            + +    +   +  + +    R   S L    ++++  + SI  K         ++   
Sbjct: 133 MSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSI-KKSSRITLKDTQIGQL 191

Query: 187 RNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLF-------------------NNSILSSLA 227
            N I         K + RL  L+ F +  + F                     +      
Sbjct: 192 SNNITFV-----SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWD 246

Query: 228 RLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEI-------DNFEVPQACSGLR 280
            L  L  + +Y+      +      +L  ++ ++++ N         D+++         
Sbjct: 247 NLKDLTDVEVYNCPNLTKLP-TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE 305

Query: 281 KLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYM 340
           K+  +++    ++    +  S+     L  L+  YN     +      F     L  L +
Sbjct: 306 KIQIIYIGYNNLKTFP-VETSLQKMKKLGMLECLYNQLEGKLPA----FGSEIKLASLNL 360

Query: 341 DDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLR 400
              +I   T            ++ LS +++ +             +  +  +  + N++ 
Sbjct: 361 AYNQI---TEIPANFCGFTEQVENLSFAHNKLKYIPNIF--DAKSVSVMSAIDFSYNEIG 415

Query: 401 G-------SLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQ---- 449
                    L        ++  +++S+NQ+            + +  + L  N       
Sbjct: 416 SVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKEL-FSTGSPLSSINLMGNMLTEIPK 474

Query: 450 --IPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPK 507
             +    E   N   L   D   N++  ++ +    T     L  L              
Sbjct: 475 NSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRAT----TLPYL-------------V 516

Query: 508 FLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLL 567
            +    DL Y   S        P   L N++ L+   + N                    
Sbjct: 517 GI----DLSYNSFSKF------PTQPL-NSSTLKGFGIRN------------------QR 547

Query: 568 DVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEI 627
           D   N      P  I      LT   I  N +   +         +  LD+ +N      
Sbjct: 548 DAQGNRTLREWPEGITL-CPSLTQLQIGSNDIR-KVNEKI--TPNISVLDIKDNPNISID 603

Query: 628 PEHLAMGCVSLRSLALSNNNLE 649
             ++    +      L  +  +
Sbjct: 604 LSYVC-PYIEAGMYMLFYDKTQ 624

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  225 bits (575), Expect = 4e-63
 Identities = 105/624 (16%), Positives = 198/624 (31%), Gaps = 92/624 (14%)

Query: 129 SNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRN 188
            + K L+L  N   +    S      L  LDLS   ++   D     SL  L  L +  N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGN 86

Query: 189 MIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDV 248
            I            S L++L+          +     +  L +L+ L +  N ++     
Sbjct: 87  PIQSLA----LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 249 KEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSL 308
           + F +L+NLE LD+S N+I +         L ++  L+L                     
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIY-CTDLRVLHQMPLLNL--------------------- 180

Query: 309 NTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLS 368
            +LDLS N          +       L +L + +     + + ++   + +  ++   L 
Sbjct: 181 -SLDLSLNPMNFIQPGAFKEI----RLHKLTLRNNF--DSLNVMKTCIQGLAGLEVHRLV 233

Query: 369 NSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSIS 428
                N           L  L  L + +  L                LD   + +I   +
Sbjct: 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY--------------LDYYLDDIIDLFN 279

Query: 429 SSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNF 488
                 LT++    L     +    ++    +   +  +  N +             P  
Sbjct: 280 -----CLTNVSSFSLVSVTIE---RVKDFSYNFGWQHLELVNCKFGQF---------PTL 322

Query: 489 QLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMN-EEFPNWLLENNTKLRQLSLVN 547
           +L+SL   +   +         +   LE++ LS   ++ +   +      T L+ L L  
Sbjct: 323 KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382

Query: 548 DSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSF 607
           + ++          +QL  LD   +N +      +   L  L   +IS      +    F
Sbjct: 383 NGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441

Query: 608 GNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQL 667
             ++ L+ L ++ N         +     +L  L LS   LE                  
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE------------------ 483

Query: 668 EGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLE 727
                    P + +  SSLQ L +S+N+           L  L+ +    NHI      E
Sbjct: 484 ------QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 537

Query: 728 FCQL-RILQILDISDNNISGSLPS 750
                  L  L+++ N+ + +   
Sbjct: 538 LQHFPSSLAFLNLTQNDFACTCEH 561

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  221 bits (564), Expect = 1e-61
 Identities = 111/558 (19%), Positives = 191/558 (34%), Gaps = 56/558 (10%)

Query: 305 FPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGES---MPS 361
             S   LDLS+N      + +   F  F  L+ L +             I   +   +  
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYS---FFSFPELQVLDLS------RCEIQTIEDGAYQSLSH 77

Query: 362 IQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSN 421
           +  L L+ + + + +         L  LQ+L   + +L     + + ++ +L+ L+V+ N
Sbjct: 78  LSTLILTGNPIQSLALGA---FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134

Query: 422 QLIGSISSSPLIHLTSIEDLILSDNHFQ--IPISLEPLFN-HSRLKIFDAENNEINAEII 478
            +          +LT++E L LS N  Q      L  L          D   N +N    
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

Query: 479 ESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNT 538
            +        +L  L L + +         +     LE  RL   +   E      + + 
Sbjct: 195 GAFK----EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

Query: 539 --KLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISM 596
              L  L++                 +L  LD   ++            L+ ++ F++  
Sbjct: 251 LEGLCNLTI--------------EEFRLAYLDYYLDDIIDLFNC-----LTNVSSFSLVS 291

Query: 597 NALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRN 656
             ++     S+      Q L+L N +        L     SL+ L  ++N          
Sbjct: 292 VTIERVKDFSY--NFGWQHLELVNCKFGQFPTLKLK----SLKRLTFTSNKGGN--AFSE 343

Query: 657 FNLTNLIWLQLEGNH--FVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHII 714
            +L +L +L L  N   F G   QS    +SL+ L LS N +   +      L  L H+ 
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLD 402

Query: 715 MPKNHIEGPIPLE-FCQLRILQILDISDNNISGSLPSC-YDFVCIEQVHLSKNMLHGQLK 772
              ++++       F  LR L  LDIS  +   +          +E + ++ N       
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

Query: 773 EGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQL 832
              F     L  LDLS   L    P   + LS L  L ++HNN           LN LQ+
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 522

Query: 833 LDLSNNNLHGHIPSCFDN 850
           LD S N++         +
Sbjct: 523 LDYSLNHIMTSKKQELQH 540

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  218 bits (558), Expect = 7e-61
 Identities = 117/623 (18%), Positives = 199/623 (31%), Gaps = 107/623 (17%)

Query: 388 HLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNH 447
             + L ++ N LR    +   +   L++LD+S  ++      +    L+ +  LIL+ N 
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA-YQSLSHLSTLILTGNP 87

Query: 448 FQIPISLEPLFNHSRLKIFDAENNEINAEIIES-HSLTTPNFQLQSLLLSSGYRDGITFP 506
            Q  ++L      S L+   A    + +        L      L+ L ++         P
Sbjct: 88  IQS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLK----TLKELNVAHNLIQSFKLP 142

Query: 507 KFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRL 566
           ++  N  +LE++ LS  K+   +   L      L Q+ L+N SL                
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDL----RVLHQMPLLNLSL---------------- 182

Query: 567 LDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPS-SFGNMNFLQFLDLSNNQLTG 625
            D+S N      P    +I  RL    +  N    ++       +  L+   L   +   
Sbjct: 183 -DLSLNPMNFIQPGAFKEI--RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239

Query: 626 E--IPEHLAMGCVSLRSLALSNNNLEGHMFSRNF------NLTNLIWLQLEGNHFVGEIP 677
           E  + +        L +L +    L    +  +        LTN+    L          
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD 299

Query: 678 QSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQIL 737
              S     Q L L N          L +L  L          +G        L  L+ L
Sbjct: 300 --FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF-----TSNKGGNAFSEVDLPSLEFL 352

Query: 738 DISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIP 797
           D+S N +S                             + F   +L  LDLS+N +   + 
Sbjct: 353 DLSRNGLSFK----------------------GCCSQSDFGTTSLKYLDLSFNGVIT-MS 389

Query: 798 DRVDGLSQLSYLILAHNNLEGEVPIQ-LCRLNQLQLLDLSNNNLHGHIPSCFDN----TT 852
               GL QL +L   H+NL+          L  L  LD+S+ +        F+       
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449

Query: 853 LHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDL 912
           L    N+                          + F                  L+ LDL
Sbjct: 450 LKMAGNSFQENFL-------------------PDIFTELRN-------------LTFLDL 477

Query: 913 SCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQ 972
           S  +L    P    +L+ +Q LN+SHNN        +  L +++ LD S N +      +
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 537

Query: 973 LVELNT-LAVFSVAYNNLSGKIP 994
           L    + LA  ++  N+ +    
Sbjct: 538 LQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  204 bits (521), Expect = 6e-56
 Identities = 113/611 (18%), Positives = 197/611 (32%), Gaps = 80/611 (13%)

Query: 434  HLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIES-HSLTTPNFQLQS 492
             + +I    +  N ++IP +L         K  D   N +      S  S      +LQ 
Sbjct: 6    VVPNITYQCMELNFYKIPDNL-----PFSTKNLDLSFNPLRHLGSYSFFSFP----ELQV 56

Query: 493  LLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVG 552
            L LS      I       +   L  + L+   +            + L++L  V  +L  
Sbjct: 57   LDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAF-SGLSSLQKLVAVETNLAS 114

Query: 553  PFRLPIHSHKQLRLLDVSKNNFQG-HIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMN 611
                PI   K L+ L+V+ N  Q   +P    + L+ L   ++S N +     +    ++
Sbjct: 115  LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN-LTNLEHLDLSSNKIQSIYCTDLRVLH 173

Query: 612  FLQF----LDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNF-NLTNLIWLQ 666
             +      LDLS N +    P       + L  L L NN    ++       L  L   +
Sbjct: 174  QMPLLNLSLDLSLNPMNFIQPGAF--KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231

Query: 667  LEGNHFVGEIPQ---SLSKCSSLQGLFLSNNSLS------GKIPRWLGNLTVLRHIIMPK 717
            L    F  E        S    L  L +    L+        I      LT +    +  
Sbjct: 232  LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS 291

Query: 718  NHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFF 777
              IE      +      Q L++ +               ++++  + N         +  
Sbjct: 292  VTIERVKDFSY--NFGWQHLELVNCKFGQFPTLK--LKSLKRLTFTSNKGGNAF---SEV 344

Query: 778  NCLTLMILDLSYNHLN--GNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDL 835
            +  +L  LDLS N L+  G       G + L YL L+ N +   +      L QL+ LD 
Sbjct: 345  DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDF 403

Query: 836  SNNNLHGHIP-SCFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDF 890
             ++NL      S F +      L   + +                            F+ 
Sbjct: 404  QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN--------------------GIFNG 443

Query: 891  TTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTF 949
             +              L  L ++ N    +  P I   L  +  L+LS   L    P+ F
Sbjct: 444  LSS-------------LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490

Query: 950  SNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSY- 1008
            ++L +++ L++S+N       +    LN+L V   + N++     +    F +       
Sbjct: 491  NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 550

Query: 1009 EGNPFLCGPPL 1019
              N F C    
Sbjct: 551  TQNDFACTCEH 561

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  204 bits (520), Expect = 8e-56
 Identities = 113/647 (17%), Positives = 206/647 (31%), Gaps = 92/647 (14%)

Query: 347 LNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWC 406
           +  +F +I      S + L LS + + +              LQ L ++  +++      
Sbjct: 15  MELNFYKIPDNLPFSTKNLDLSFNPLRH---LGSYSFFSFPELQVLDLSRCEIQTIEDGA 71

Query: 407 LANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIF 466
             +++ L  L ++ N +      +    L+S++ L+  + +     +  P+ +   LK  
Sbjct: 72  YQSLSHLSTLILTGNPIQSLALGA-FSGLSSLQKLVAVETNLASLEN-FPIGHLKTLKEL 129

Query: 467 DAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQH---DLEYVRLSHI 523
           +  +N I +  +  +     N  L+ L LSS     I                 + LS  
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTN--LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 524 KMNEEFPNWLLENNTKLRQLSLVNDSLVGPF-RLPIHSHKQLRLLDVSKNNFQGHIPLEI 582
            MN   P        +L +L+L N+       +  I     L +  +    F+    LE 
Sbjct: 188 PMNFIQPGAF--KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245

Query: 583 GDI-----LSRLTVFNISMNALDGS---IPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMG 634
            D      L  LT+    +  LD     I   F  +  +    L +  +           
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS---Y 302

Query: 635 CVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNN 694
               + L L N         +  +L  L +   +G         S     SL+ L LS N
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG-----NAFSEVDLPSLEFLDLSRN 357

Query: 695 SLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDF 754
            LS                       +G           L+ LD+S N +     +    
Sbjct: 358 GLS----------------------FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL 395

Query: 755 VCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHN 814
             +E +    + L    +   F +   L+ LD+S+ H         +GLS L  L +A N
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455

Query: 815 NLEGEV-PIQLCRLNQLQLLDLSNNNLHGHIPSCFDN----TTLHERYNNGSSLQPFETS 869
           + +    P     L  L  LDLS   L    P+ F++      L+  +NN  SL      
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT---- 511

Query: 870 FVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNL- 928
                             +                  L  LD S N ++     ++ +  
Sbjct: 512 ----------------FPYKCLNS-------------LQVLDYSLNHIMTSKKQELQHFP 542

Query: 929 TKIQTLNLSHNNLAGPIPST--FSNLRNIESLDLSYNKLSWKIPYQL 973
           + +  LNL+ N+ A           +++   L +   ++    P   
Sbjct: 543 SSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK 589

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  199 bits (509), Expect = 2e-54
 Identities = 120/613 (19%), Positives = 196/613 (31%), Gaps = 59/613 (9%)

Query: 76  VVVLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLN 135
              LDLS        +L +  F  F +L+ LDL   +I    +         LS+L  L 
Sbjct: 30  TKNLDLSFNP---LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLI 82

Query: 136 LVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVV 195
           L GN   +  L + + LSSL  L      L    +   +  L+ L++LN+  N+I  F +
Sbjct: 83  LTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF-PIGHLKTLKELNVAHNLIQSFKL 141

Query: 196 SKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLS 255
              P+  S L NL+  DLS N   +   + L  L  +  L L  +     ++  +  +  
Sbjct: 142 ---PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198

Query: 256 --NLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQ-SMGSFPSLNTLD 312
              L +L +  N      +     GL  L    L+    R+   L +    +   L  L 
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

Query: 313 LSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSV 372
           +                  F  L  +                           SL     
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNV------------------------SSFSL----- 289

Query: 373 SNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPL 432
            + +    +        Q L + +          L ++  L                   
Sbjct: 290 VSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF------SE 343

Query: 433 IHLTSIEDLILSDNHFQ-IPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQ 491
           + L S+E L LS N         +  F  + LK  D   N +         L     QL+
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLE----QLE 399

Query: 492 SLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLV 551
            L         ++      +  +L Y+ +SH      F        + L  L +  +S  
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNSFQ 458

Query: 552 GPFRLPIHSH-KQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNM 610
             F   I +  + L  LD+S+   +   P      LS L V N+S N         +  +
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS-LSSLQVLNMSHNNFFSLDTFPYKCL 517

Query: 611 NFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNF--NLTNLIWLQLE 668
           N LQ LD S N +     + L     SL  L L+ N+       ++F   + +   L +E
Sbjct: 518 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVE 577

Query: 669 GNHFVGEIPQSLS 681
                   P    
Sbjct: 578 VERMECATPSDKQ 590

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  213 bits (544), Expect = 5e-62
 Identities = 69/294 (23%), Positives = 113/294 (38%), Gaps = 56/294 (19%)

Query: 557 PIHSHKQLRLLDVSKNNFQG--HIPLEIGDILSRLTVFNIS-MNALDGSIPSSFGNMNFL 613
                 ++  LD+S  N      IP  + + L  L    I  +N L G IP +   +  L
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 614 QFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFV 673
            +L +++  ++G IP+ L+                          +  L+ L    N   
Sbjct: 104 HYLYITHTNVSGAIPDFLS-------------------------QIKTLVTLDFSYNALS 138

Query: 674 GEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVL-RHIIMPKNHIEGPIPLEFCQLR 732
           G +P S+S   +L G+    N +SG IP   G+ + L   + + +N + G IP  F  L 
Sbjct: 139 GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN 198

Query: 733 ILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHL 792
            L  +D+S N + G                             F +      + L+ N L
Sbjct: 199 -LAFVDLSRNMLEGDASV------------------------LFGSDKNTQKIHLAKNSL 233

Query: 793 NGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPS 846
             ++   V     L+ L L +N + G +P  L +L  L  L++S NNL G IP 
Sbjct: 234 AFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  195 bits (499), Expect = 5e-56
 Identities = 71/378 (18%), Positives = 123/378 (32%), Gaps = 108/378 (28%)

Query: 675  EIPQSLSKCSSLQ----GLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEG--PIPLEF 728
            +I + L   ++L          N +  G +         + ++ +   ++    PIP   
Sbjct: 13   QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 729  CQLRILQILDISD-NNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDL 787
              L  L  L I   NN+ G +P                                L  L +
Sbjct: 73   ANLPYLNFLYIGGINNLVGPIPP------------------------AIAKLTQLHYLYI 108

Query: 788  SYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSC 847
            ++ +++G IPD +  +  L  L  ++N L G +P  +  L  L  +    N + G IP  
Sbjct: 109  THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168

Query: 848  FDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLL 907
            +                                                    G    L 
Sbjct: 169  Y----------------------------------------------------GSFSKLF 176

Query: 908  SGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSW 967
            + + +S NRL G IPP   NL  +  ++LS N L G     F + +N + + L+ N L++
Sbjct: 177  TSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235

Query: 968  KIPYQLVELNTLAVFSVAYNNLSGKIPE-----------------------RAAQFATFN 1004
             +  ++     L    +  N + G +P+                       +      F+
Sbjct: 236  DLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFD 294

Query: 1005 ESSYEGNPFLCGPPLPIC 1022
             S+Y  N  LCG PLP C
Sbjct: 295  VSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  183 bits (467), Expect = 1e-51
 Identities = 84/358 (23%), Positives = 133/358 (37%), Gaps = 71/358 (19%)

Query: 602 SIPSSFGNMNFLQ----FLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNF 657
            I    GN   L       D  N    G + +        + +L LS  NL       + 
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDT-QTYRVNNLDLSGLNLPKPYPIPSS 71

Query: 658 --NLTNLIWLQLEG-NHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHII 714
             NL  L +L + G N+ VG IP +++K + L  L++++ ++SG IP +L  +  L  + 
Sbjct: 72  LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131

Query: 715 MPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVC---IEQVHLSKNMLHGQL 771
              N + G +P     L  L  +    N ISG++P  Y          + +S+N L G++
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY-GSFSKLFTSMTISRNRLTGKI 190

Query: 772 KEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQ 831
              TF N L L  +DLS N L G+             + LA N+L  ++  ++     L 
Sbjct: 191 PP-TFAN-LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLN 247

Query: 832 LLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFT 891
            LDL NN ++G +P                                       L S +  
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKF-------------------------------LHSLN-- 274

Query: 892 TKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNL--AGPIPS 947
                               +S N L G I PQ GNL +      ++N      P+P+
Sbjct: 275 --------------------VSFNNLCGEI-PQGGNLQRFDVSAYANNKCLCGSPLPA 311

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  178 bits (454), Expect = 7e-50
 Identities = 63/290 (21%), Positives = 105/290 (36%), Gaps = 55/290 (18%)

Query: 538 TKLRQLSLVND-SLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISM 596
             L  L +    +LVGP    I    QL  L ++  N  G IP  +   +  L   + S 
Sbjct: 76  PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ-IKTLVTLDFSY 134

Query: 597 NALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRN 656
           NAL G++P S  ++  L  +    N+++G IP+                           
Sbjct: 135 NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY------------------------- 169

Query: 657 FNLTNLI-WLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIM 715
            + + L   + +  N   G+IP + +   +L  + LS N L G      G+    + I +
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228

Query: 716 PKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGT 775
            KN +   +  +    + L  LD+ +N I G+LP                          
Sbjct: 229 AKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQ------------------------G 263

Query: 776 FFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLC 825
                 L  L++S+N+L G IP     L +      A+N      P+  C
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  153 bits (390), Expect = 2e-41
 Identities = 69/366 (18%), Positives = 112/366 (30%), Gaps = 90/366 (24%)

Query: 392 LHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLI-HLTSIEDLILSD-NHF- 448
               +    G L         +  LD+S   L         + +L  +  L +   N+  
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 449 -QIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPK 507
             IP +   +   ++L      +  ++  I                            P 
Sbjct: 91  GPIPPA---IAKLTQLHYLYITHTNVSGAI----------------------------PD 119

Query: 508 FLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLL 567
           FL     L  +  S+  ++   P  +                      LP      L  +
Sbjct: 120 FLSQIKTLVTLDFSYNALSGTLPPSI--------------------SSLP-----NLVGI 154

Query: 568 DVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEI 627
               N   G IP   G      T   IS N L G IP +F N+N L F+DLS N L G+ 
Sbjct: 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDA 213

Query: 628 PEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQ 687
                                         +  N   + L  N    ++   +    +L 
Sbjct: 214 SVLF-------------------------GSDKNTQKIHLAKNSLAFDLG-KVGLSKNLN 247

Query: 688 GLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNI--S 745
           GL L NN + G +P+ L  L  L  + +  N++ G IP     L+   +   ++N     
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG-NLQRFDVSAYANNKCLCG 306

Query: 746 GSLPSC 751
             LP+C
Sbjct: 307 SPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  125 bits (316), Expect = 1e-31
 Identities = 77/303 (25%), Positives = 132/303 (43%), Gaps = 30/303 (9%)

Query: 25  EGCLNHERFALLQLKLFFIDPYNYLLDWVDDEGATDCCQ--WERVSCNNT--MGRVVVLD 80
           E C   ++ ALLQ+K    +P   L  W+     TDCC   W  V C+      RV  LD
Sbjct: 1   ELCNPQDKQALLQIKKDLGNPTT-LSSWLPT---TDCCNRTWLGVLCDTDTQTYRVNNLD 56

Query: 81  LSQTHRGEYWYLNASLFTPFQQLESLDLRD-NDIAGCVENEGLERLSRLSNLKMLNLVGN 139
           LS  +  + + + +SL      L  L +   N++ G +       +++L+ L  L +   
Sbjct: 57  LSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPA----IAKLTQLHYLYITHT 111

Query: 140 LFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKG- 198
             + +I   L+++ +L +LD S N L G++    + SL +L  +    N I       G 
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTL-PPSISSLPNLVGITFDGNRIS------GA 164

Query: 199 -PKRLSRLNNLKVF-DLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSN 256
            P      + L     +S N     I  + A L +L  + L  N LEG      F S  N
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDAS-VLFGSDKN 222

Query: 257 LEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYN 316
            +++ ++ N +  F++ +     + L+ L L    I  G+ L Q +     L++L++S+N
Sbjct: 223 TQKIHLAKNSL-AFDLGKV-GLSKNLNGLDLRNNRIY-GT-LPQGLTQLKFLHSLNVSFN 278

Query: 317 NFT 319
           N  
Sbjct: 279 NLC 281

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  218 bits (557), Expect = 9e-61
 Identities = 105/626 (16%), Positives = 210/626 (33%), Gaps = 101/626 (16%)

Query: 128 LSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGR 187
            ++ + L    N+      ++ +RL +LT LDL+  ++   I      S   L+ L +  
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTA 90

Query: 188 NMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSID 247
           N +           LS    LK         ++     L    +L SL L  N +  SI 
Sbjct: 91  NPLIFM----AETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS-SIK 145

Query: 248 VKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPS 307
           + +      L+ LD   N I      +  S L++ + L                      
Sbjct: 146 LPKGFPTEKLKVLDFQNNAIHYLS-KEDMSSLQQATNL---------------------- 182

Query: 308 LNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSL 367
             +L+L+ N+          G       + L     +  L   F  +   ++ S+   + 
Sbjct: 183 --SLNLNGNDIAGIEP----GAFDSAVFQSLNFGGTQN-LLVIFKGLKNSTIQSLWLGTF 235

Query: 368 SNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSI 427
            +    + S  + +GLC +  ++ +++  +             + L+ LD+++   +  +
Sbjct: 236 EDMDDEDISPAVFEGLCEM-SVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSEL 293

Query: 428 SSSPLIHLTSIEDLILSDNHFQ--IPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTT 485
            S  L+ L++++ L+LS N F+    IS     +                          
Sbjct: 294 PSG-LVGLSTLKKLVLSANKFENLCQISASNFPS-------------------------- 326

Query: 486 PNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSL 545
               L  L +    +        L N  +L  + LSH                 +     
Sbjct: 327 ----LTHLSIKGNTKRLELGTGCLENLENLRELDLSH---------------DDIETSDC 367

Query: 546 VNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIP- 604
            N  L             L+ L++S N     +  E      +L + +++   L      
Sbjct: 368 CNLQLRN--------LSHLQSLNLSYNEPL-SLKTEAFKECPQLELLDLAFTRLKVKDAQ 418

Query: 605 SSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNF---NLTN 661
           S F N++ L+ L+LS++ L     +    G  +L+ L L  N+       +      L  
Sbjct: 419 SPFQNLHLLKVLNLSHSLLDISSEQLFD-GLPALQHLNLQGNHFPKGNIQKTNSLQTLGR 477

Query: 662 LIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIE 721
           L  L L           + +    +  + LS+N L+      L +L  + ++ +  NHI 
Sbjct: 478 LEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHIS 536

Query: 722 GPIPLEFCQLRILQILDISDNNISGS 747
             +P     L   + +++  N +  +
Sbjct: 537 IILPSLLPILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  206 bits (525), Expect = 2e-56
 Identities = 103/602 (17%), Positives = 198/602 (32%), Gaps = 39/602 (6%)

Query: 103 LESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSA 162
            E L+   N +            SRL NL  L+L           +      L +L L+A
Sbjct: 35  TECLEFSFNVLPTIQNTT----FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90

Query: 163 NRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSI 222
           N L   +    L   + L+ L   +  I           L     L+   L  N  ++  
Sbjct: 91  NPLI-FMAETALSGPKALKHLFFIQTGISSI----DFIPLHNQKTLESLYLGSNHISSIK 145

Query: 223 LSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLE--ELDMSYNEIDNFEVPQACSGLR 280
           L        L+ L   +N +   +  ++  SL       L+++ N+I    +        
Sbjct: 146 LPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIA--GIEPGAFDSA 202

Query: 281 KLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYM 340
               L+                 +  SL        +  +      +G     S++ + +
Sbjct: 203 VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE-MSVESINL 261

Query: 341 DDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLR 400
                    +           +Q L L+      +   L  GL  L  L++L ++ N   
Sbjct: 262 QKHYF---FNISSNTFHCFSGLQELDLTA----THLSELPSGLVGLSTLKKLVLSANKFE 314

Query: 401 GSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQ-IPISLEPLFN 459
                  +N  SL  L +  N     + +  L +L ++ +L LS +  +        L N
Sbjct: 315 NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN 374

Query: 460 HSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVR 519
            S L+  +   NE     +++ +      QL+ L L+              N H L+ + 
Sbjct: 375 LSHLQSLNLSYNEPL--SLKTEAFKE-CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431

Query: 520 LSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHS---HKQLRLLDVSKNNFQG 576
           LSH  ++      L +    L+ L+L  +          +S     +L +L +S  +   
Sbjct: 432 LSHSLLD-ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS 490

Query: 577 HIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCV 636
                    L  +   ++S N L  S   +  ++  +  L+L++N ++  +P  L     
Sbjct: 491 IDQHAFTS-LKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLP-ILS 547

Query: 637 SLRSLALSNNNLEGHMFSRNFNLTNLI-WLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNS 695
             R++ L  N L+        +    + W +                   L+G+ LS+ +
Sbjct: 548 QQRTINLRQNPLDC-----TCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVT 602

Query: 696 LS 697
           LS
Sbjct: 603 LS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  195 bits (498), Expect = 5e-53
 Identities = 110/623 (17%), Positives = 195/623 (31%), Gaps = 89/623 (14%)

Query: 414  RILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEI 473
            +  +  +  L    +  P     S E L  S N     I          L   D    +I
Sbjct: 15   KTYNCENLGL----NEIPGTLPNSTECLEFSFNVLPT-IQNTTFSRLINLTFLDLTRCQI 69

Query: 474  NAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWL 533
                I   +                            +QH L+ + L+   +       L
Sbjct: 70   --YWIHEDTF--------------------------QSQHRLDTLVLTANPLIFMAETAL 101

Query: 534  LENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFN 593
                  L+ L  +   +     +P+H+ K L  L +  N+    I L  G    +L V +
Sbjct: 102  -SGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLD 159

Query: 594  ISMNALDGSIPSSFGNMNFLQ--FLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGH 651
               NA+         ++       L+L+ N + G  P   A      +SL          
Sbjct: 160  FQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPG--AFDSAVFQSLNFGGTQNLLV 217

Query: 652  MFS--RNFNLTNLIWLQLEGNHFVGEIPQSLSKCS--SLQGLFLSNNSLSGKIPRWLGNL 707
            +F   +N  + +L     E        P         S++ + L  +             
Sbjct: 218  IFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCF 277

Query: 708  TVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLP-SCYDFVCIEQVHLSKNM 766
            + L+ + +   H+   +P     L  L+ L +S N        S  +F  +  + +  N 
Sbjct: 278  SGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT 336

Query: 767  LHGQLKEGTFFNCLTLMILDLSYNHLN--GNIPDRVDGLSQLSYLILAHNNLEGEVPIQL 824
               +L  G   N   L  LDLS++ +        ++  LS L  L L++N          
Sbjct: 337  KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF 396

Query: 825  CRLNQLQLLDLSNNNLHGHIP-SCFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVD 879
                QL+LLDL+   L      S F N      L+  ++                     
Sbjct: 397  KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE-------------- 442

Query: 880  PKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRL---IGHIPPQIGNLTKIQTLNL 936
                  + FD                 L  L+L  N            +  L +++ L L
Sbjct: 443  ------QLFDGLPA-------------LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483

Query: 937  SHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPER 996
            S  +L+      F++L+ +  +DLS+N+L+      L  L  +   ++A N++S  +P  
Sbjct: 484  SFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSL 542

Query: 997  AAQFATFNESSYEGNPFLCGPPL 1019
                +     +   NP  C    
Sbjct: 543  LPILSQQRTINLRQNPLDCTCSN 565

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  143 bits (363), Expect = 9e-36
 Identities = 75/374 (20%), Positives = 141/374 (37%), Gaps = 19/374 (5%)

Query: 100 FQQLESLDLRDNDIAG-CVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSL 158
               +SL+           +      +  L      ++     + ++   L  +S + S+
Sbjct: 201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS-VESI 259

Query: 159 DLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLF 218
           +L  +    +I          L++L++    + +      P  L  L+ LK   LS N F
Sbjct: 260 NLQKHYFF-NISSNTFHCFSGLQELDLTATHLSEL-----PSGLVGLSTLKKLVLSANKF 313

Query: 219 NNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEV-PQACS 277
            N    S +   SL  L +  N     +     ++L NL ELD+S+++I+  +       
Sbjct: 314 ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR 373

Query: 278 GLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKE 337
            L  L  L+L            ++    P L  LDL++         +   F +   LK 
Sbjct: 374 NLSHLQSLNLSYNEPLSLKT--EAFKECPQLELLDLAFTRLKVKDAQSP--FQNLHLLKV 429

Query: 338 LYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADN 397
           L +  + +       + + + +P++Q+L+L  +     +      L  L  L+ L ++  
Sbjct: 430 LNLSHSLL---DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486

Query: 398 DLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPL 457
           DL         ++  +  +D+S N+L  S S   L HL  I  L L+ NH  I I    L
Sbjct: 487 DLSSIDQHAFTSLKMMNHVDLSHNRLT-SSSIEALSHLKGIY-LNLASNHISI-ILPSLL 543

Query: 458 FNHSRLKIFDAENN 471
              S+ +  +   N
Sbjct: 544 PILSQQRTINLRQN 557

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  221 bits (565), Expect = 5e-60
 Identities = 85/647 (13%), Positives = 175/647 (27%), Gaps = 136/647 (21%)

Query: 369 NSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSIS 428
           N  +          L     +  L +A    +G +P  +  +T L++L   ++    S  
Sbjct: 305 NKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGR 364

Query: 429 SSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINA--EIIESHSLTTP 486
                 L + +      +  ++      L    RL + D   + IN   E+      +  
Sbjct: 365 LFGDEEL-TPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRI 423

Query: 487 NFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLV 546
           + +   +   +     I   K +     L+ +  ++        +    +N  +      
Sbjct: 424 SLKDTQIGNLTNRITFI--SKAIQRLTKLQIIYFAN--------SPFTYDNIAV------ 467

Query: 547 NDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSS 606
                                +        +  L   + L  LT   +        +P  
Sbjct: 468 ----------------DWEDANSDYAKQYENEELSWSN-LKDLTDVELYNCPNMTQLPDF 510

Query: 607 FGNMNFLQFLDLSNNQLTGEIPEHLAM--------GCVSLRSLALSNNNLEGHMFSRNF- 657
             ++  LQ L+++ N+                       ++   +  NNLE    S +  
Sbjct: 511 LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQ 570

Query: 658 NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPK 717
            +  L  L    N       ++      L  L L  N +      +      +  +    
Sbjct: 571 KMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSH 628

Query: 718 NHIEG-PIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTF 776
           N ++  P       + ++  +D S N I                                
Sbjct: 629 NKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGR-------------------NISCSMDD 669

Query: 777 FNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLE-------GEVPIQLCRLNQ 829
           +  +    + LSYN +     +     S +S +IL++N +                    
Sbjct: 670 YKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYL 729

Query: 830 LQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFD 889
           L  +DL  N L   +   F  TTL                                    
Sbjct: 730 LTTIDLRFNKLTS-LSDDFRATTLPY---------------------------------- 754

Query: 890 FTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSH------NNLAG 943
                            LS +D+S N      P Q  N ++++   + H      N +  
Sbjct: 755 -----------------LSNMDVSYNCF-SSFPTQPLNSSQLKAFGIRHQRDAEGNRILR 796

Query: 944 PIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLS 990
             P+  +   ++  L +  N +  K+  +L     L +  +A N   
Sbjct: 797 QWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNI 840

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  197 bits (502), Expect = 4e-52
 Identities = 95/700 (13%), Positives = 187/700 (26%), Gaps = 119/700 (17%)

Query: 170 DIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARL 229
            IK+  +L+ + +   G+N                 N    F+   +++ +     L   
Sbjct: 267 YIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWN----FNKELDMWGDQPGVDLDNN 322

Query: 230 SSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLR 289
             +  L L     +G +       L+ L+ L    +        +          +   R
Sbjct: 323 GRVTGLSLAGFGAKGRVP-DAIGQLTELKVLSFGTHSE--TVSGRLFGDEELTPDMSEER 379

Query: 290 VGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNT 349
                       +     LN  DL  +                               N 
Sbjct: 380 KHRIRMHYKKMFLDYDQRLNLSDLLQDAINR---------------------------NP 412

Query: 350 SFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLAN 409
               I  +S  S++   + N +  N    + + +  L  LQ ++ A++            
Sbjct: 413 EMKPIKKDSRISLKDTQIGNLT--NRITFISKAIQRLTKLQIIYFANSPFTY-----DNI 465

Query: 410 MTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHF--QIPISLEPLFNHSRLKIFD 467
                  +    +   +   S   +L  + D+ L +     Q+P  L  L     L+  +
Sbjct: 466 AVDWEDANSDYAKQYENEELS-WSNLKDLTDVELYNCPNMTQLPDFLYDL---PELQSLN 521

Query: 468 AENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNE 527
              N   +        T                              ++   + +  + E
Sbjct: 522 IACNRGISAAQLKADWTR-------------------LADDEDTGPKIQIFYMGYNNLEE 562

Query: 528 EFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILS 587
              +  L+   KL  L                            N  + H+    G    
Sbjct: 563 FPASASLQKMVKLGLLDC------------------------VHNKVR-HLE-AFGT-NV 595

Query: 588 RLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMG-CVSLRSLALSNN 646
           +LT   +  N ++          + ++ L  S+N+L   IP          + S+  S N
Sbjct: 596 KLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYN 654

Query: 647 NLEGH-----MFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLS---- 697
            +            ++   N   + L  N       +  +  S +  + LSNN ++    
Sbjct: 655 KIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPE 714

Query: 698 ---GKIPRWLGNLTVLRHIIMPKNHIEG-PIPLEFCQLRILQILDISDNNIS------GS 747
                      N  +L  I +  N +           L  L  +D+S N  S       +
Sbjct: 715 NSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLN 774

Query: 748 LPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLS 807
                 F    Q     N +  Q        C +L+ L +  N +   + +      QL 
Sbjct: 775 SSQLKAFGIRHQRDAEGNRILRQWPT-GITTCPSLIQLQIGSNDIR-KVDE--KLTPQLY 830

Query: 808 YLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSC 847
            L +A N         +C   +  +  L  +     I  C
Sbjct: 831 ILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ-DIRGC 869

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  175 bits (444), Expect = 6e-45
 Identities = 89/612 (14%), Positives = 191/612 (31%), Gaps = 87/612 (14%)

Query: 102 QLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLS 161
           ++  L L      G V +     + +L+ LK+L+   +    S         +    +  
Sbjct: 324 RVTGLSLAGFGAKGRVPDA----IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEER 379

Query: 162 ANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNS 221
            +R++       LD  + L   ++ ++ I++    K  K+ SR++       +       
Sbjct: 380 KHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF 439

Query: 222 ILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRK 281
           I  ++ RL+ L+ +   ++               + E+ +  Y +        + S L+ 
Sbjct: 440 ISKAIQRLTKLQIIYFANSPFTYDN------IAVDWEDANSDYAKQYE-NEELSWSNLKD 492

Query: 282 LSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMD 341
           L+ + L      + ++L   +   P L +L+++ N                         
Sbjct: 493 LTDVELY--NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTG--- 547

Query: 342 DARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTL--DQGLCPLVHLQELHMADNDL 399
                             P IQ   +      NN         L  +V L  L    N +
Sbjct: 548 ------------------PKIQIFYMGY----NNLEEFPASASLQKMVKLGLLDCVHNKV 585

Query: 400 RGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFN 459
           R  L         L  L +  NQ+   I          +E L  S N  +   ++    +
Sbjct: 586 R-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKS 642

Query: 460 HSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVR 519
              +   D   N+I      + S +  +++  +                         V 
Sbjct: 643 VYVMGSVDFSYNKIG-SEGRNISCSMDDYKGIN----------------------ASTVT 679

Query: 520 LSHIKMNEEFPNWLLENNTKLRQLSL-------VNDSLVGPFRLPIHSHKQLRLLDVSKN 572
           LS+ ++ ++FP  L    + +  + L       + ++ + P      +   L  +D+  N
Sbjct: 680 LSYNEI-QKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN 738

Query: 573 NFQGHIPLEIGDI-LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDL------SNNQLTG 625
                +  +     L  L+  ++S N    S P+   N + L+   +        N++  
Sbjct: 739 KLTS-LSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILR 796

Query: 626 EIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSS 685
           + P  +   C SL  L + +N++             L  L +  N  +     S+     
Sbjct: 797 QWPTGIT-TCPSLIQLQIGSNDIRK--VDEKL-TPQLYILDIADNPNISIDVTSVCPYIE 852

Query: 686 LQGLFLSNNSLS 697
                L  +   
Sbjct: 853 AGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  172 bits (437), Expect = 4e-44
 Identities = 74/525 (14%), Positives = 157/525 (29%), Gaps = 121/525 (23%)

Query: 489 QLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVND 548
           ++  L L+     G   P  +    +L+ +             +  E  T        + 
Sbjct: 324 RVTGLSLAGFGAKGR-VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHR 382

Query: 549 SLVGPFRLPIHSHKQLRLLDVSKNNFQGH---IPLEIGDILS-RLTVFNISMNALDGSIP 604
             +   ++ +   ++L L D+ ++    +    P++    +S + T      N +   I 
Sbjct: 383 IRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRI-TFIS 441

Query: 605 SSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIW 664
            +   +  LQ +  +N+  T +         V              +      NL +L  
Sbjct: 442 KAIQRLTKLQIIYFANSPFTYDNIA------VDWEDANSDYAKQYENEELSWSNLKDLTD 495

Query: 665 LQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPI 724
           ++L     + ++P  L     LQ L ++ N       +   + T               +
Sbjct: 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS-AAQLKADWT--------------RL 540

Query: 725 PLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMI 784
             +      +QI  +  NN+    P+                        +    + L +
Sbjct: 541 ADDEDTGPKIQIFYMGYNNLE-EFPA----------------------SASLQKMVKLGL 577

Query: 785 LDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCR-LNQLQLLDLSNNNLHGH 843
           LD  +N +     +      +L+ L L +N +E E+P   C   +Q++ L  S+N L   
Sbjct: 578 LDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY- 633

Query: 844 IPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRV 903
           IP+ F+  +++                                                 
Sbjct: 634 IPNIFNAKSVYV------------------------------------------------ 645

Query: 904 PSLLSGLDLSCNRLIGHIPPQIG------NLTKIQTLNLSHNNLAGPIPSTFSNLRNIES 957
              +  +D S N+ IG     I             T+ LS+N +       F+    I +
Sbjct: 646 ---MGSVDFSYNK-IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIST 701

Query: 958 LDLSYNKLS-------WKIPYQLVELNTLAVFSVAYNNLSGKIPE 995
           + LS N ++                   L    + +N L+  + +
Sbjct: 702 IILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSD 745

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  165 bits (420), Expect = 6e-42
 Identities = 76/559 (13%), Positives = 176/559 (31%), Gaps = 99/559 (17%)

Query: 470 NNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEF 529
            + I    +E+ S+   +F +    L+      I   +      D  Y  L  I    + 
Sbjct: 226 QSGIKRSELETQSVRGESFTVIDNKLTKDANVPIQLKETAEYIKD--YKALKAIWEALDG 283

Query: 530 PNWLLENNTKLRQLSLVN-------DSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEI 582
            NW   + T    +  +N       D       + + ++ ++  L ++    +G +P  I
Sbjct: 284 KNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAI 343

Query: 583 GDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLA 642
           G  L+ L V +   ++   S              +   +++     +        L    
Sbjct: 344 GQ-LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402

Query: 643 LSNNNLEGH---MFSRNFNLTNLIWLQLEGNH-FVGEIPQSLSKCSSLQGLFLSNNSLSG 698
           L  + +  +      +  +  +L   Q+      +  I +++ + + LQ ++ +N+  + 
Sbjct: 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTY 462

Query: 699 KIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIE 758
                        +             L +  L+ L  +++ +      LP         
Sbjct: 463 DNIAVDWEDANSDY-----AKQYENEELSWSNLKDLTDVELYNCPNMTQLPD-------- 509

Query: 759 QVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNG---------NIPDRVDGLSQLSYL 809
                             ++   L  L+++ N              + D  D   ++   
Sbjct: 510 ----------------FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553

Query: 810 ILAHNNLEG-EVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE---RYNNGSSLQP 865
            + +NNLE       L ++ +L LLD  +N +  H+ +   N  L +    YN    + P
Sbjct: 554 YMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIEEI-P 611

Query: 866 FETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPP-- 923
            +                                       + GL  S N+L  +IP   
Sbjct: 612 EDF--------------------------------CAFTDQVEGLGFSHNKL-KYIPNIF 638

Query: 924 QIGNLTKIQTLNLSHNNLAGPIPSTFS-----NLRNIESLDLSYNKLSWKIPYQLVELNT 978
              ++  + +++ S+N +     +           N  ++ LSYN++           + 
Sbjct: 639 NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSP 698

Query: 979 LAVFSVAYNNLSGKIPERA 997
           ++   ++ N ++  IPE +
Sbjct: 699 ISTIILSNNLMT-SIPENS 716

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  161 bits (409), Expect = 1e-40
 Identities = 61/424 (14%), Positives = 118/424 (27%), Gaps = 73/424 (17%)

Query: 586  LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSN 645
              R+T  +++     G +P + G +  L+ L    +  T               S    +
Sbjct: 322  NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKH 381

Query: 646  NNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLG 705
                               +++       +  Q L+    LQ     N  +         
Sbjct: 382  R------------------IRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRI 423

Query: 706  NLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKN 765
            +L     I    N I   I     +L  LQI+  +++  +                    
Sbjct: 424  SLKDT-QIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNI---------------- 465

Query: 766  MLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLC 825
                          +     +  Y     N       L  L+ + L +     ++P  L 
Sbjct: 466  -------------AVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512

Query: 826  RLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQIL 885
             L +LQ L+++ N          D T L +  + G  +Q F   +  +         Q +
Sbjct: 513  DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKM 572

Query: 886  ESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPI 945
                                 L  LD   N++        G   K+  L L +N +    
Sbjct: 573  VK-------------------LGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIEEIP 611

Query: 946  PSTFSNLRNIESLDLSYNKLSWKIP--YQLVELNTLAVFSVAYNNLSGKIPERAAQFATF 1003
                +    +E L  S+NKL   IP  +    +  +     +YN +  +    +     +
Sbjct: 612  EDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDY 670

Query: 1004 NESS 1007
               +
Sbjct: 671  KGIN 674

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  207 bits (528), Expect = 7e-57
 Identities = 103/551 (18%), Positives = 183/551 (33%), Gaps = 32/551 (5%)

Query: 129 SNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRN 188
           S+ K ++L  N        S +  S L  LDLS   ++ +I+ K    L  L  L +  N
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGN 90

Query: 189 MIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDV 248
            I  F     P   S L +L+          +     + +L +L+ L +  N +      
Sbjct: 91  PIQSF----SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLP 146

Query: 249 KEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLS----YLHLLRVGIRDGSKLLQSMGS 304
             F +L+NL  +D+SYN I           LR+       L +    I     +      
Sbjct: 147 AYFSNLTNLVHVDLSYNYIQTIT-VNDLQFLRENPQVNLSLDMSLNPI---DFIQDQAFQ 202

Query: 305 FPSLNTLDLSYNNFTETVTTTT-QGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQ 363
              L+ L L  N  +  +  T  Q        + +  +         F   I E +  + 
Sbjct: 203 GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT 262

Query: 364 YLSLSNSSVSNNSRTLDQG-LCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQ 422
                 +    N  + D      L ++  + +A   +       +      + L +   Q
Sbjct: 263 IDEFRLTY--TNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQ 318

Query: 423 LIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIES-H 481
               +   P + L  ++ L L+ N   I            L   D   N ++     S  
Sbjct: 319 ----LKQFPTLDLPFLKSLTLTMNKGSIS---FKKVALPSLSYLDLSRNALSFSGCCSYS 371

Query: 482 SLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLR 541
            L T +  L+ L LS  +   I          +L+++   H  +          +  KL 
Sbjct: 372 DLGTNS--LRHLDLS--FNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427

Query: 542 QLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDG 601
            L +   +    F         L  L ++ N+F+ +    +    + LT  ++S   L+ 
Sbjct: 428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ 487

Query: 602 SIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTN 661
                F  ++ LQ L++S+N L      H      SL +L  S N +E           +
Sbjct: 488 ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN-QLYSLSTLDCSFNRIETSKGILQHFPKS 546

Query: 662 LIWLQLEGNHF 672
           L +  L  N  
Sbjct: 547 LAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  200 bits (511), Expect = 1e-54
 Identities = 100/562 (17%), Positives = 184/562 (32%), Gaps = 65/562 (11%)

Query: 305 FPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGES---MPS 361
             S   +DLS+N      + +   F +F  L+ L +             I  ++   +  
Sbjct: 31  PSSTKNIDLSFNPLKILKSYS---FSNFSELQWLDLS------RCEIETIEDKAWHGLHH 81

Query: 362 IQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSN 421
           +  L L+ + + + S         L  L+ L   +  L     + +  + +L+ L+V+ N
Sbjct: 82  LSNLILTGNPIQSFSPGS---FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 138

Query: 422 QLIGSISSSPLIHLTSIEDLILSDNHFQ--IPISLEPLFN-HSRLKIFDAENNEINAEII 478
            +      +   +LT++  + LS N+ Q      L+ L          D   N I  + I
Sbjct: 139 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI--DFI 196

Query: 479 ESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNT 538
           +  +      +L  L L   +         L N   L   RL   +  +E    + E + 
Sbjct: 197 QDQAFQ--GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSI 254

Query: 539 -------KLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTV 591
                   + +  L   +      +  H    +  + ++  + +    LE      +   
Sbjct: 255 MEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY---LEDVPKHFKWQS 311

Query: 592 FNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLE-- 649
            +I    L         ++ FL+ L L+ N+ +    +   +   SL  L LS N L   
Sbjct: 312 LSIIRCQLKQF---PTLDLPFLKSLTLTMNKGSISFKK---VALPSLSYLDLSRNALSFS 365

Query: 650 GHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRW-LGNLT 708
           G     +    +L  L L  N  +  +  +      LQ L   +++L          +L 
Sbjct: 366 GCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE 424

Query: 709 VLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLH 768
            L ++ +   + +      F  L  L  L ++ N+   +  S                  
Sbjct: 425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS------------------ 466

Query: 769 GQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLN 828
                  F N   L  LDLS   L        D L +L  L ++HNNL         +L 
Sbjct: 467 -----NVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLY 521

Query: 829 QLQLLDLSNNNLHGHIPSCFDN 850
            L  LD S N +          
Sbjct: 522 SLSTLDCSFNRIETSKGILQHF 543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  183 bits (466), Expect = 9e-49
 Identities = 108/622 (17%), Positives = 204/622 (32%), Gaps = 115/622 (18%)

Query: 388 HLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNH 447
             + + ++ N L+    +  +N + L+ LD+S  + I +I       L  + +LIL+ N 
Sbjct: 33  STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGNP 91

Query: 448 FQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPK 507
            Q   S       + L+   A   ++ +  +ES  +      L+ L ++           
Sbjct: 92  IQS-FSPGSFSGLTSLENLVAVETKLAS--LESFPIG-QLITLKKLNVA----------- 136

Query: 508 FLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLL 567
             +N        +   K+   F N                                L  +
Sbjct: 137 --HNF-------IHSCKLPAYFSNL-----------------------------TNLVHV 158

Query: 568 DVSKNNFQGHIPLEIGDILSRLTVF----NISMNALDGSIPSSFGNMNFLQFLDLSNNQL 623
           D+S N  Q  I +     L          ++S+N +D     +F  +  L  L L  N  
Sbjct: 159 DLSYNYIQ-TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFN 216

Query: 624 TGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLT--------NLIWLQLEGNHFVGE 675
           +  I +        L    L     +       F  +         +   +L   +   +
Sbjct: 217 SSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSD 276

Query: 676 IPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQ 735
                   +++  + L+  S+       +      + + + +  ++         L  L+
Sbjct: 277 DIVKFHCLANVSAMSLAGVSIKYLED--VPKHFKWQSLSIIRCQLKQ---FPTLDLPFLK 331

Query: 736 ILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFN--CLTLMILDLSYNHLN 793
            L ++ N  S S         +  + LS+N L       ++ +    +L  LDLS+N   
Sbjct: 332 SLTLTMNKGSISFKKV-ALPSLSYLDLSRNALSF-SGCCSYSDLGTNSLRHLDLSFNGAI 389

Query: 794 GNIPDRVDGLSQLSYLILAHNNLEGEVPIQ-LCRLNQLQLLDLSNNNLHGHIPSCFDN-- 850
             +     GL +L +L   H+ L+          L +L  LD+S  N        F    
Sbjct: 390 I-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448

Query: 851 --TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLS 908
              TL    N+                            F  TT              L+
Sbjct: 449 SLNTLKMAGNSFKDNTL-------------------SNVFANTTN-------------LT 476

Query: 909 GLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWK 968
            LDLS  +L          L ++Q LN+SHNNL     S ++ L ++ +LD S+N++   
Sbjct: 477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS 536

Query: 969 IPYQLVELNTLAVFSVAYNNLS 990
                    +LA F++  N+++
Sbjct: 537 KGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  178 bits (454), Expect = 3e-47
 Identities = 112/640 (17%), Positives = 192/640 (30%), Gaps = 99/640 (15%)

Query: 401  GSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNH 460
            GSL  C+  + ++        +L    S  P    +S +++ LS N  +I +      N 
Sbjct: 2    GSLNPCIEVVPNIT-YQCMDQKL----SKVPDDIPSSTKNIDLSFNPLKI-LKSYSFSNF 55

Query: 461  SRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRL 520
            S L+  D    EI                                 K  +  H L  + L
Sbjct: 56   SELQWLDLSRCEIETIE----------------------------DKAWHGLHHLSNLIL 87

Query: 521  SHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPL 580
            +   +   F        T L  L  V   L      PI     L+ L+V+ N        
Sbjct: 88   TGNPIQS-FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLP 146

Query: 581  EIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQF----LDLSNNQLTGEIPEHLAMGCV 636
                 L+ L   ++S N +     +    +         LD+S N +     +  A   +
Sbjct: 147  AYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQ--AFQGI 204

Query: 637  SLRSLALSNNNLEGHMFSRNF-NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLF----- 690
             L  L L  N    ++      NL  L   +L    F  E    + + S ++GL      
Sbjct: 205  KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID 264

Query: 691  ---LSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGS 747
               L+  +           L  +  + +    I+    +        Q L I    +   
Sbjct: 265  EFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFK--WQSLSIIRCQLK-Q 321

Query: 748  LPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLN--GNIPDRVDGLSQ 805
             P+  D   ++ + L+ N               +L  LDLS N L+  G       G + 
Sbjct: 322  FPT-LDLPFLKSLTLTMNKGSISF---KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS 377

Query: 806  LSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIP-SCFDN----TTLHERYNNG 860
            L +L L+ N     +      L +LQ LD  ++ L      S F +      L   Y N 
Sbjct: 378  LRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436

Query: 861  SSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGH 920
                                       F   T              L+ L ++ N    +
Sbjct: 437  KIDFD--------------------GIFLGLTS-------------LNTLKMAGNSFKDN 463

Query: 921  IPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTL 979
                +  N T +  L+LS   L       F  L  ++ L++S+N L +       +L +L
Sbjct: 464  TLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSL 523

Query: 980  AVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPL 1019
            +    ++N +            +    +   N   C    
Sbjct: 524  STLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEH 563

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  174 bits (443), Expect = 6e-46
 Identities = 89/543 (16%), Positives = 173/543 (31%), Gaps = 65/543 (11%)

Query: 92  LNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLAR 151
           +    +     L +L L  N I            S L++L+ L  V     +     + +
Sbjct: 71  IEDKAWHGLHHLSNLILTGNPIQSFSPGS----FSGLTSLENLVAVETKLASLESFPIGQ 126

Query: 152 LSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVF 211
           L +L  L+++ N +          +L +L  +++  N I           L  L      
Sbjct: 127 LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT----VNDLQFLRENPQV 182

Query: 212 DLSGNLFNNSILS---SLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEID 268
           +LS ++  N I        +   L  L L  N    +I      +L+ L    +   E  
Sbjct: 183 NLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK 242

Query: 269 NFEV-----PQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVT 323
           +        P    GL  ++          D S  +       +++ + L+  +      
Sbjct: 243 DERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI----- 297

Query: 324 TTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGL 383
              +  P     + L +   ++       Q     +P ++ L+L     + N  ++    
Sbjct: 298 KYLEDVPKHFKWQSLSIIRCQLK------QFPTLDLPFLKSLTL-----TMNKGSISFKK 346

Query: 384 CPLVHLQELHMADNDLRGSLPWCLANM--TSLRILDVSSNQLIGSISSSPLIHLTSIEDL 441
             L  L  L ++ N L  S     +++   SLR LD+S N     I S+  + L  ++ L
Sbjct: 347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA--IIMSANFMGLEELQHL 404

Query: 442 ILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRD 501
               +  +         +  +L   D                                  
Sbjct: 405 DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK--------------------------- 437

Query: 502 GITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSH 561
            I F         L  ++++     +   + +  N T L  L L    L         + 
Sbjct: 438 -IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL 496

Query: 562 KQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNN 621
            +L+LL++S NN    +     + L  L+  + S N ++ S          L F +L+NN
Sbjct: 497 HRLQLLNMSHNNLL-FLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555

Query: 622 QLT 624
            + 
Sbjct: 556 SVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  139 bits (353), Expect = 2e-34
 Identities = 85/556 (15%), Positives = 175/556 (31%), Gaps = 92/556 (16%)

Query: 78  VLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLV 137
            L   +T       L +        L+ L++  N I  C         S L+NL  ++L 
Sbjct: 108 NLVAVETK---LASLESFPIGQLITLKKLNVAHNFIHSCKLPAY---FSNLTNLVHVDLS 161

Query: 138 GNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSK 197
            N      ++ L  L     +                        L++  N ID      
Sbjct: 162 YNYIQTITVNDLQFLRENPQV---------------------NLSLDMSLNPIDFI---- 196

Query: 198 GPKRLSRLNNLKVFDLSGNLFNNSILS-SLARLSSLRSLLLYDNRLEG-----SIDVKEF 251
              +  +   L    L GN  +++I+   L  L+ L    L     +        +    
Sbjct: 197 -QDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIM 255

Query: 252 DSLSNL--EELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLN 309
           + L ++  +E  ++Y      +       L  +S + L  V I+     L+ +       
Sbjct: 256 EGLCDVTIDEFRLTYTND-FSDDIVKFHCLANVSAMSLAGVSIKY----LEDVPKHFKWQ 310

Query: 310 TLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSN 369
           +L +      +              LK L +   + +++   +     ++PS+ YL LS 
Sbjct: 311 SLSIIRCQLKQFP------TLDLPFLKSLTLTMNKGSISFKKV-----ALPSLSYLDLSR 359

Query: 370 SSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISS 429
           +++S +       L     L+ L ++ N     +      +  L+ LD   + L      
Sbjct: 360 NALSFSGCCSYSDLG-TNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEF 417

Query: 430 SPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQ 489
           S  + L  +  L +S  + +I          + L       N      +           
Sbjct: 418 SAFLSLEKLLYLDISYTNTKI-DFDGIFLGLTSLNTLKMAGNSFKDNTL----------- 465

Query: 490 LQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDS 549
                                N  +L ++ LS  ++ E+    + +   +L+ L++ +++
Sbjct: 466 ----------------SNVFANTTNLTFLDLSKCQL-EQISWGVFDTLHRLQLLNMSHNN 508

Query: 550 LVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGN 609
           L+       +    L  LD S N  +      +      L  FN++ N++         +
Sbjct: 509 LLFLDSSHYNQLYSLSTLDCSFNRIET-SKGILQHFPKSLAFFNLTNNSVA----CICEH 563

Query: 610 MNFLQFLDLSNNQLTG 625
             FLQ++      L  
Sbjct: 564 QKFLQWVKEQKQFLVN 579

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  137 bits (347), Expect = 1e-33
 Identities = 77/462 (16%), Positives = 159/462 (34%), Gaps = 39/462 (8%)

Query: 95  SLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILS---SLAR 151
           + F+    L  +DL  N I     N+    L  L     +NL  ++  N I        +
Sbjct: 147 AYFSNLTNLVHVDLSYNYIQTITVND----LQFLRENPQVNLSLDMSLNPIDFIQDQAFQ 202

Query: 152 LSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSK--GPKRLSRLNNLK 209
              L  L L  N    +I    L +L  L    +           +   P  +  L ++ 
Sbjct: 203 GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT 262

Query: 210 V--FDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEI 267
           +  F L+     +  +     L+++ ++ L    ++    +++       + L +   ++
Sbjct: 263 IDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK---YLEDVPKHFKWQSLSIIRCQL 319

Query: 268 DNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQ 327
             F        L  L  L L          +     + PSL+ LDLS N  + +   +  
Sbjct: 320 KQFP----TLDLPFLKSLTLTMNKG----SISFKKVALPSLSYLDLSRNALSFSGCCSYS 371

Query: 328 GFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLV 387
                 SL+ L +      + ++        +  +Q+L   +S++   +         L 
Sbjct: 372 DLGT-NSLRHLDLSFNGAIIMSANFM----GLEELQHLDFQHSTLKRVTEF--SAFLSLE 424

Query: 388 HLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNH 447
            L  L ++  + +         +TSL  L ++ N    +  S+   + T++  L LS   
Sbjct: 425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ 484

Query: 448 FQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPK 507
            +  IS        RL++ +  +N +   +  SH     +  L +L  S    +      
Sbjct: 485 LEQ-ISWGVFDTLHRLQLLNMSHNNLL-FLDSSHYNQLYS--LSTLDCSFNRIETS-KGI 539

Query: 508 FLYNQHDLEYVRLSH-----IKMNEEFPNWLLENNTKLRQLS 544
             +    L +  L++     I  +++F  W+ E    L  + 
Sbjct: 540 LQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVE 581

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  190 bits (483), Expect = 7e-50
 Identities = 125/665 (18%), Positives = 229/665 (34%), Gaps = 64/665 (9%)

Query: 110 DNDIAGCVENEGLERL-SRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGS 168
           D  IA       L ++   L+  + L L  N       SS   L  L  L+L +     +
Sbjct: 5   DGRIAFY-RFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT 63

Query: 169 IDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSS--L 226
           ID +   +L +L  L++G + I        P     L +L    L     ++++L     
Sbjct: 64  IDKEAFRNLPNLRILDLGSSKIYFL----HPDAFQGLFHLFELRLYFCGLSDAVLKDGYF 119

Query: 227 ARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLR--KLSY 284
             L +L  L L  N++        F  L++L+ +D S N+I           L+   LS+
Sbjct: 120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC-EHELEPLQGKTLSF 178

Query: 285 LHLLRVGIR--DGSKLLQSMGSFP--SLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYM 340
             L    +         + M  F    L  LD+S N +T  +T              L  
Sbjct: 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSL-- 236

Query: 341 DDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLR 400
                                I        ++ +  +    GL     ++ L ++   + 
Sbjct: 237 ----------------ILAHHIMGAGFGFHNIKDPDQNTFAGLARS-SVRHLDLSHGFVF 279

Query: 401 GSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNH 460
                    +  L++L+++ N+ I  I+      L +++ L LS N     +     +  
Sbjct: 280 SLNSRVFETLKDLKVLNLAYNK-INKIADEAFYGLDNLQVLNLSYNLLGE-LYSSNFYGL 337

Query: 461 SRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRL 520
            ++   D + N I   II+  +       LQ+L L     + +T   F+ +   +  + L
Sbjct: 338 PKVAYIDLQKNHIA--IIQDQTFKFLEK-LQTLDLRD---NALTTIHFIPS---IPDIFL 388

Query: 521 SHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPL 580
           S  K+       L  N   L +  L N  ++            L++L +++N F      
Sbjct: 389 SGNKLVTLPKINLTANLIHLSENRLENLDILYFLL----RVPHLQILILNQNRFSSCSGD 444

Query: 581 EIGDILSRLTVFNISMNALDGSIPSS-----FGNMNFLQFLDLSNNQLTGEIPEHLAMGC 635
           +       L    +  N L  +  +      F  ++ LQ L L++N L   +P  +    
Sbjct: 445 QTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN-SLPPGVFSHL 503

Query: 636 VSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNS 695
            +LR L+L++N L   + S N    NL  L +  N  +   P       SL  L +++N 
Sbjct: 504 TALRGLSLNSNRL--TVLSHNDLPANLEILDISRNQLLAPNPDVF---VSLSVLDITHNK 558

Query: 696 LSGKIP-RWLGNLTVLRHIIMPKN--HIEGPIPLEFCQLRILQILDISDNNISGSLPSCY 752
              +       N     ++ +      I    P  F  + +   L     +    L S  
Sbjct: 559 FICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFS-LSTEGCDEEEVLKSLK 617

Query: 753 DFVCI 757
             + I
Sbjct: 618 FSLFI 622

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  179 bits (456), Expect = 2e-46
 Identities = 109/753 (14%), Positives = 213/753 (28%), Gaps = 136/753 (18%)

Query: 366  SLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIG 425
            S            L Q    L   + L ++ N +R         +  L++L++ S     
Sbjct: 3    SFDGRIAFYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL 62

Query: 426  SISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTT 485
            +I      +L ++  L L  +     +  +       L         ++  +++      
Sbjct: 63   TIDKEAFRNLPNLRILDLGSSKIYF-LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR- 120

Query: 486  PNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSL 545
                L  L LS      +         + L+ +  S  ++                   +
Sbjct: 121  NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF-----------------LV 163

Query: 546  VNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPS 605
                L           K L    ++ N+    + ++ G  ++                  
Sbjct: 164  CEHELEPL------QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMV------------ 205

Query: 606  SFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWL 665
                   L+ LD+S N  T +I                 +N +            +++  
Sbjct: 206  -------LEILDVSGNGWTVDITG-------------NFSNAISKSQAFSLILAHHIMGA 245

Query: 666  QLEGNHFVGEIPQSLS--KCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGP 723
                ++       + +    SS++ L LS+  +     R    L  L+ + +  N I   
Sbjct: 246  GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI 305

Query: 724  IPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLM 783
                F  L  LQ+L++S N +                         +L    F+    + 
Sbjct: 306  ADEAFYGLDNLQVLNLSYNLLG------------------------ELYSSNFYGLPKVA 341

Query: 784  ILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGH 843
             +DL  NH+          L +L  L L  N L       +  +  +  + LS N L   
Sbjct: 342  YIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVTL 396

Query: 844  IPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRV 903
                     +H   N   +L         +  +        L+         +     + 
Sbjct: 397  PKINLTANLIHLSENRLENLDIL----YFLLRV------PHLQILILNQNRFSSCSGDQT 446

Query: 904  PSLLSG---LDLSCNRLIGHIPPQI-----GNLTKIQTLNLSHNNLAGPIPSTFSNLRNI 955
            PS       L L  N L      ++       L+ +Q L L+HN L    P  FS+L  +
Sbjct: 447  PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTAL 506

Query: 956  ESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLC 1015
              L L+ N+L+      L     L +  ++ N L    P+    F + +      N F+C
Sbjct: 507  RGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPD---VFVSLSVLDITHNKFIC 561

Query: 1016 ------------GPPLPICISPTTMPEASPSNEGDNNLIDMDI-------------FFIT 1050
                           + I   P  +    P +    +L  +               F + 
Sbjct: 562  ECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLF 621

Query: 1051 FTTSYVIVIFGIVAVLYVNARWRRRWFYLVEMW 1083
               +  + +F +  +     R      Y     
Sbjct: 622  IVCTVTLTLFLMTILTVTKFRGFCFICYKTAQR 654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  171 bits (435), Expect = 7e-44
 Identities = 132/664 (19%), Positives = 216/664 (32%), Gaps = 134/664 (20%)

Query: 203 SRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDM 262
             LN  +   LS N       SS   L  L+ L L       +ID + F +L NL  LD+
Sbjct: 21  QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80

Query: 263 SYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETV 322
             ++I     P A  GL  L  L L   G+ D         +  +L  LDLS N      
Sbjct: 81  GSSKIYFLH-PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIR--- 136

Query: 323 TTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQG 382
                                 + L+ SF       + S++ +  S++ +        + 
Sbjct: 137 ---------------------SLYLHPSF-----GKLNSLKSIDFSSNQIFLVCEHELEP 170

Query: 383 LCPLVHLQELHMADNDLRGSLPWCLANM------TSLRILDVSSNQLIGSISSSPLIHLT 436
           L     L    +A N L   +               L ILDVS N     I+ +    ++
Sbjct: 171 LQGK-TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAIS 229

Query: 437 SIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLS 496
             +   L   H               +       + I  +  ++         ++ L LS
Sbjct: 230 KSQAFSLILAH--------------HIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLS 274

Query: 497 SGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRL 556
            G+   +   +      DL+ + L++ K+N +  +        L+ L+L           
Sbjct: 275 HGFVFSLN-SRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNL----------- 321

Query: 557 PIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFL 616
              S+  L  L    +NF G         L ++   ++  N +      +F  +  LQ L
Sbjct: 322 ---SYNLLGELY--SSNFYG---------LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTL 367

Query: 617 DLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEG-HMFSRNFNLTNLIWLQLEGNHFVGE 675
           DL +N LT  I         S+  + LS N L      +   NL +L   +LE       
Sbjct: 368 DLRDNALT-TIH-----FIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLD---- 417

Query: 676 IPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQ 735
           I   L +   LQ L L+ N  S                                +   L+
Sbjct: 418 ILYFLLRVPHLQILILNQNRFSSCSGDQT-----------------------PSENPSLE 454

Query: 736 ILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGN 795
            L + +N +  +  +                    L    F     L +L L++N+LN  
Sbjct: 455 QLFLGENMLQLAWETE-------------------LCWDVFEGLSHLQVLYLNHNYLNSL 495

Query: 796 IPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE 855
            P     L+ L  L L  N L       L     L++LD+S N L    P  F + ++ +
Sbjct: 496 PPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPDVFVSLSVLD 553

Query: 856 RYNN 859
             +N
Sbjct: 554 ITHN 557

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  143 bits (362), Expect = 6e-35
 Identities = 114/634 (17%), Positives = 211/634 (33%), Gaps = 119/634 (18%)

Query: 78  VLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLV 137
           +LDL  +     ++L+   F     L  L L    ++  V  +G      L  L  L+L 
Sbjct: 77  ILDLGSSKI---YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGY--FRNLKALTRLDLS 131

Query: 138 GNLFNN-SILSSLARLSSLTSLDLSANRLKGSIDIKELDSLR--DLEKLNIGRNMIDKFV 194
            N   +  +  S  +L+SL S+D S+N++   +   EL+ L+   L   ++  N +   V
Sbjct: 132 KNQIRSLYLHPSFGKLNSLKSIDFSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLYSRV 190

Query: 195 VSKGPKRLSRLNN--LKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFD 252
                K ++   N  L++ D+SGN +   I  + +   S                     
Sbjct: 191 SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAIS-------------KSQAFSLI 237

Query: 253 SLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLD 312
              ++      ++ I + +     +GL +                         S+  LD
Sbjct: 238 LAHHIMGAGFGFHNIKDPD-QNTFAGLARS------------------------SVRHLD 272

Query: 313 LSYNNFTETVTTTTQGFPHFKSLKELYMDDARI-ALNTSFLQIIGESMPSIQYLSLSNSS 371
           LS+     ++ +    F   K LK L +   +I  +           + ++Q L+LS   
Sbjct: 273 LSHGFVF-SLNSRV--FETLKDLKVLNLAYNKINKIADEAFY----GLDNLQVLNLSY-- 323

Query: 372 VSNNSRTLDQG-LCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSS 430
             N    L       L  +  + +  N +          +  L+ LD+  N L      +
Sbjct: 324 --NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL------T 375

Query: 431 PLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQL 490
            +  + SI D+ LS N                                   +L   N   
Sbjct: 376 TIHFIPSIPDIFLSGNKL--------------------------------VTLPKINLTA 403

Query: 491 QSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSL 550
             + LS    + +    FL     L+ + L+  + +    +     N  L QL L  + L
Sbjct: 404 NLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENML 463

Query: 551 VGPFRLPIHSH-----KQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPS 605
              +   +          L++L ++ N     +P  +   L+ L   +++ N L     +
Sbjct: 464 QLAWETELCWDVFEGLSHLQVLYLNHNYLN-SLPPGVFSHLTALRGLSLNSNRLTVLSHN 522

Query: 606 SFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWL 665
                  L+ LD+S NQL    P+       SL  L +++N      F     L+  I  
Sbjct: 523 DLPAN--LEILDISRNQLLAPNPDVFV----SLSVLDITHNK-----FICECELSTFINW 571

Query: 666 QLEGNHFVGEIPQSL--SKCSSLQGLFLSNNSLS 697
               N  +   P  +      S  G+ L + S  
Sbjct: 572 LNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTE 605

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  168 bits (428), Expect = 3e-44
 Identities = 115/604 (19%), Positives = 208/604 (34%), Gaps = 101/604 (16%)

Query: 153 SSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFD 212
            S  +LDLS N L+  +      S  +L+ L++ R  I              L++L    
Sbjct: 28  FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTI----EDGAYQSLSHLSTLI 82

Query: 213 LSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEV 272
           L+GN   +  L + + LSSL+ L+  +  L  S++      L  L+EL++++N I +F++
Sbjct: 83  LTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKL 141

Query: 273 PQACSGLRKLSYLHLLRVGIRD-GSKLLQSMGSFPSLN-TLDLSYNNFTETVTTTTQGFP 330
           P+  S L  L +L L    I+      L+ +   P LN +LDLS N          +   
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI- 200

Query: 331 HFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQ 390
               L +L + +   +LN     I G +   +  L L       N    D+    L  L 
Sbjct: 201 ---RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA--LEGLC 255

Query: 391 ELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQI 450
            L + +  L                   +               LT++    L     + 
Sbjct: 256 NLTIEEFRL-------------------AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE- 295

Query: 451 PISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLY 510
              ++    +   +  +  N +                Q  +L L S             
Sbjct: 296 --RVKDFSYNFGWQHLELVNCKFG--------------QFPTLKLKS------------- 326

Query: 511 NQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVS 570
               L+ +  +  K    F      +   L  L L              S   L      
Sbjct: 327 ----LKRLTFTSNKGGNAFS---EVDLPSLEFLDL--------------SRNGLSFKGCC 365

Query: 571 KNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEH 630
             +  G          + L   ++S N +  ++ S+F  +  L+ LD  ++ L       
Sbjct: 366 SQSDFG---------TTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFS 415

Query: 631 LAMGCVSLRSLALSNNNLEG---HMFSRNFNLTNLIWLQLEGNHFVGEIPQ-SLSKCSSL 686
           + +   +L  L +S+ +       +F+    L++L  L++ GN F         ++  +L
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFN---GLSSLEVLKMAGNSFQENFLPDIFTELRNL 472

Query: 687 QGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISG 746
             L LS   L    P    +L+ L+ + M  N ++      F +L  LQ + +  N    
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 532

Query: 747 SLPS 750
           S P 
Sbjct: 533 SCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  162 bits (411), Expect = 5e-42
 Identities = 109/599 (18%), Positives = 201/599 (33%), Gaps = 96/599 (16%)

Query: 206 NNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYN 265
            + K  DLS N   +    S      L+ L L    ++ +I+   + SLS+L  L ++ N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86

Query: 266 EIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTT 325
            I +     A SGL  L  L  +   +         +G   +L  L++++N         
Sbjct: 87  PIQSLA-LGAFSGLSSLQKLVAVETNLASLEN--FPIGHLKTLKELNVAHNLIQS----- 138

Query: 326 TQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCP 385
                                L   F      ++ ++++L LS++ + +   T  + L  
Sbjct: 139 -------------------FKLPEYF-----SNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174

Query: 386 L-VHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILS 444
           + +    L ++ N +    P     +  L  L + +N    ++  + +  L  +E   L 
Sbjct: 175 MPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 233

Query: 445 DNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGIT 504
              F+         N   L+ FD           +S      N  ++   L+        
Sbjct: 234 LGEFR---------NEGNLEKFD-----------KSALEGLCNLTIEEFRLAYLDYYLDD 273

Query: 505 FPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQL 564
                    ++    L  + +           N   + L LVN       + P    K L
Sbjct: 274 IIDLFNCLTNVSSFSLVSVTIERVKD---FSYNFGWQHLELVNCKF---GQFPTLKLKSL 327

Query: 565 RLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALD--GSIPSSFGNMNFLQFLDLSNNQ 622
           + L  + N             L  L   ++S N L   G    S      L++LDLS N 
Sbjct: 328 KRLTFTSNKGGNAFS---EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384

Query: 623 LTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNF--NLTNLIWLQLEGNHFVGEIPQSL 680
           +   +  +  +G   L  L   ++NL+  M   +   +L NLI+L +   H         
Sbjct: 385 VI-TMSSNF-LGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441

Query: 681 SKCSSLQGLFLSNNSLSGKIPRW-LGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDI 739
           +  SSL+ L ++ NS            L  L  + + +  +E   P  F  L  LQ+L++
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501

Query: 740 SDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPD 798
           + N +                          + +G F    +L  + L  N  + + P 
Sbjct: 502 ASNQLK------------------------SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  159 bits (403), Expect = 6e-41
 Identities = 112/565 (19%), Positives = 193/565 (34%), Gaps = 85/565 (15%)

Query: 92  LNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLAR 151
           L +  F  F +L+ LDL   +I   +E+        LS+L  L L GN   +  L + + 
Sbjct: 43  LGSYSFFSFPELQVLDLSRCEIQT-IEDGA---YQSLSHLSTLILTGNPIQSLALGAFSG 98

Query: 152 LSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVF 211
           LSSL  L      L  S++   +  L+ L++LN+  N+I  F   K P+  S L NL+  
Sbjct: 99  LSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSF---KLPEYFSNLTNLEHL 154

Query: 212 DLSGNLFNNSILSSLARLSSLR----SLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEI 267
           DLS N   +   + L  L  +     SL L  N +   I    F  +  L +L +  N  
Sbjct: 155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEI-RLHKLTLRNNFD 212

Query: 268 DNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQ-SMGSFPSLNTLDLSYNNFTETVTTTT 326
               +     GL  L    L+    R+   L +    +   L  L +             
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272

Query: 327 QGFPHFKSLKELYMDDARIALNTSFLQIIGE-SMPSIQYLSLSNSSVSNNSRTLDQGLCP 385
                F  L  +                        ++ ++                   
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLK--------- 323

Query: 386 LVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQL-IGSISSSPLIHLTSIEDLILS 444
           L  L+ L    N    +      ++ SL  LD+S N L      S      TS++ L LS
Sbjct: 324 LKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 445 DNHFQIPISLEPLF-NHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGI 503
            N      ++   F    +L+  D +++ +    +   S+      L  L +S       
Sbjct: 382 FNGVI---TMSSNFLGLEQLEHLDFQHSNLK--QMSEFSVFLSLRNLIYLDIS------- 429

Query: 504 TFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQ 563
                 +                    N +    + L  L +                  
Sbjct: 430 ------HTH-------TRVA------FNGIFNGLSSLEVLKM------------------ 452

Query: 564 LRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQL 623
                 + N+FQ +   +I   L  LT  ++S   L+   P++F +++ LQ L++++NQL
Sbjct: 453 ------AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506

Query: 624 TGEIPEHLAMGCVSLRSLALSNNNL 648
              +P+ +     SL+ + L  N  
Sbjct: 507 K-SVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  146 bits (369), Expect = 1e-36
 Identities = 104/603 (17%), Positives = 180/603 (29%), Gaps = 122/603 (20%)

Query: 411 TSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAEN 470
            S + LD+S N  +  + S        ++ L LS    Q  I      + S L       
Sbjct: 28  FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTG 85

Query: 471 NEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFP 530
           N                  +QSL                                     
Sbjct: 86  N-----------------PIQSL------------------------------------A 92

Query: 531 NWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLT 590
                  + L++L  V  +L      PI   K L+ L+V+ N  Q     E    L+ L 
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152

Query: 591 VFNISMNALDGSIPSSFGNMNFLQF----LDLSNNQLTGEIPEHLAMGCVSLRSLALSNN 646
             ++S N +     +    ++ +      LDLS N +    P       + L  L L NN
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE--IRLHKLTLRNN 210

Query: 647 NLEGHMFSRNF-NLTNLIWLQLEGNHFVGEI------PQSLSKCSSLQGLFLSNNSLSG- 698
               ++       L  L   +L    F  E         +L    +L         L   
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270

Query: 699 --KIPRWLGNLTVLRHIIMPKNHIEGPIPLEF-CQLRILQILDISDNNISGSLPSCYDFV 755
              I      LT +    +    IE      +    + L++++                 
Sbjct: 271 LDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL-----KLK 325

Query: 756 CIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLN--GNIPDRVDGLSQLSYLILAH 813
            ++++  + N         +  +  +L  LDLS N L+  G       G + L YL L+ 
Sbjct: 326 SLKRLTFTSNKGG---NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382

Query: 814 NNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIP-SCFDN----TTLHERYNNGSSLQPFET 868
           N +   +      L QL+ LD  ++NL      S F +      L   + +         
Sbjct: 383 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN--- 438

Query: 869 SFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQI-GN 927
                              F+  +              L  L ++ N    +  P I   
Sbjct: 439 -----------------GIFNGLSS-------------LEVLKMAGNSFQENFLPDIFTE 468

Query: 928 LTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYN 987
           L  +  L+LS   L    P+ F++L +++ L+++ N+L          L +L    +  N
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

Query: 988 NLS 990
              
Sbjct: 529 PWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  137 bits (346), Expect = 1e-33
 Identities = 82/467 (17%), Positives = 156/467 (33%), Gaps = 40/467 (8%)

Query: 564 LRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQL 623
            + LD+S N  + H+          L V ++S   +      ++ +++ L  L L+ N +
Sbjct: 30  TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 624 TGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHF-VGEIPQSLSK 682
              +      G  SL+ L     NL         +L  L  L +  N     ++P+  S 
Sbjct: 89  Q-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 683 CSSLQGLFLSNNSLSGKIPRWLGNLTVLR----HIIMPKNHIEGPIPLEFCQLRILQILD 738
            ++L+ L LS+N +       L  L  +      + +  N +    P  F ++R L  L 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLT 206

Query: 739 ISDNNISGSLPS--CYDFVCIEQVHLSKNMLHGQ-----LKEGTFFNCLTLMILDLSYNH 791
           + +N  S ++          +E   L       +       +        L I +    +
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266

Query: 792 LNG---NIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCF 848
           L+    +I D  + L+ +S   L    +E             Q L+L N           
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKL 324

Query: 849 DN-TTLHERYNNGSSLQPFET----SFVIMGGMDVDPKKQILESFDFTTK----SITYTY 899
            +   L    N G +           F+ +    +  K    +S   TT      +++  
Sbjct: 325 KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384

Query: 900 QGRVPSLLSG------LDLSCNRLIGHIPPQI--GNLTKIQTLNLSHNNLAGPIPSTFSN 951
              + S   G      LD   + L   +       +L  +  L++SH +        F+ 
Sbjct: 385 VITMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443

Query: 952 LRNIESLDLSYNKLSWKI-PYQLVELNTLAVFSVAYNNLSGKIPERA 997
           L ++E L ++ N       P    EL  L    ++   L  ++   A
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTA 489

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  124 bits (314), Expect = 9e-30
 Identities = 75/411 (18%), Positives = 136/411 (33%), Gaps = 51/411 (12%)

Query: 617 DLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEI 676
                    +IP++L     S ++L LS N L        F+   L  L L         
Sbjct: 13  QCMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 677 PQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQI 736
             +    S L  L L+ N +          L+ L+ ++  + ++          L+ L+ 
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 737 LDISDNNISGSLPSCYDFVC---IEQVHLSKNMLHGQLKEGTFFN----CLTLMILDLSY 789
           L+++ N I  S      F     +E + LS N +   +            L  + LDLS 
Sbjct: 129 LNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 790 NHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCR-LNQLQLLDL------SNNNLHG 842
           N +N  I        +L  L L +N     V     + L  L++  L      +  NL  
Sbjct: 187 NPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245

Query: 843 HIPSCFDN-TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQG 901
              S  +    L       + L  +         +D+      + SF   + +I      
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDI-----IDLFNCLTNVSSFSLVSVTIERVKDF 300

Query: 902 RVPSLLSGLDLSCNRL--------------------IGHIPPQIGNLTKIQTLNLSHNNL 941
                   L+L   +                      G+   ++ +L  ++ L+LS N L
Sbjct: 301 SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV-DLPSLEFLDLSRNGL 359

Query: 942 A--GPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLS 990
           +  G    +     +++ LDLS+N +   +    + L  L      ++NL 
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK 409

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 76.3 bits (188), Expect = 3e-14
 Identities = 34/151 (22%), Positives = 66/151 (43%), Gaps = 7/151 (4%)

Query: 95  SLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSS 154
           S F   +QLE LD + +++    E         L NL  L++       +       LSS
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSE---FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 155 LTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLS 214
           L  L ++ N  + +        LR+L  L++ +  +++      P   + L++L+V +++
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL----SPTAFNSLSSLQVLNMA 502

Query: 215 GNLFNNSILSSLARLSSLRSLLLYDNRLEGS 245
            N   +       RL+SL+ + L+ N  + S
Sbjct: 503 SNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  155 bits (395), Expect = 1e-40
 Identities = 107/525 (20%), Positives = 208/525 (39%), Gaps = 70/525 (13%)

Query: 105 SLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANR 164
           +   +D  I        +   + L+      L      +    S   L  +T+L      
Sbjct: 6   ATITQDTPI------NQIFTDTALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLG 57

Query: 165 LKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILS 224
           +K    I  ++ L +L ++N   N +           L  L  L    ++ N   +  ++
Sbjct: 58  IK---SIDGVEYLNNLTQINFSNNQL------TDITPLKNLTKLVDILMNNNQIAD--IT 106

Query: 225 SLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSY 284
            LA L++L  L L++N++    D+    +L+NL  L++S N I +     A SGL  L  
Sbjct: 107 PLANLTNLTGLTLFNNQIT---DIDPLKNLTNLNRLELSSNTISDIS---ALSGLTSLQQ 160

Query: 285 LHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDAR 344
           L        +    L+ + +  +L  LD+S N  ++             +L+ L   + +
Sbjct: 161 LSF-----GNQVTDLKPLANLTTLERLDISSNKVSD-----ISVLAKLTNLESLIATNNQ 210

Query: 345 IALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLP 404
           I+  T         + ++  LSL+ + + +        L  L +L +L +A+N +    P
Sbjct: 211 ISDITPL-----GILTNLDELSLNGNQLKDIG-----TLASLTNLTDLDLANNQISNLAP 260

Query: 405 WCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLK 464
             L+ +T L  L + +NQ+    + SPL  LT++ +L L++N  +    + P+ N   L 
Sbjct: 261 --LSGLTKLTELKLGANQI---SNISPLAGLTALTNLELNENQLE---DISPISNLKNLT 312

Query: 465 IFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIK 524
                 N I+ +I    SLT    +LQ L   +   + ++    L N  ++ ++   H +
Sbjct: 313 YLTLYFNNIS-DISPVSSLT----KLQRLFFYN---NKVSDVSSLANLTNINWLSAGHNQ 364

Query: 525 MNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHI-PLEIG 583
           +++  P   L N T++ QL L + +       P++    + + +  KN     I P  I 
Sbjct: 365 ISDLTP---LANLTRITQLGLNDQAWTN---APVNYKANVSIPNTVKNVTGALIAPATIS 418

Query: 584 DILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIP 628
           D     T  +I+ N L           +    +       +G + 
Sbjct: 419 D-GGSYTEPDITWN-LPSYTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  150 bits (380), Expect = 1e-38
 Identities = 99/543 (18%), Positives = 199/543 (36%), Gaps = 89/543 (16%)

Query: 140 LFNNSI--LSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSK 197
             +  I  + +   L+      L    +  ++   +LD    +  L   R  I      K
Sbjct: 9   TQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQ---VTTLQADRLGI------K 59

Query: 198 GPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNL 257
               +  LNNL   + S N   +  ++ L  L+ L  +L+ +N++    D+    +L+NL
Sbjct: 60  SIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIA---DITPLANLTNL 114

Query: 258 EELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNN 317
             L +  N+I + +       L  L+ L L    I D    + ++    SL  L      
Sbjct: 115 TGLTLFNNQITDID---PLKNLTNLNRLELSSNTISD----ISALSGLTSLQQLSFGNQV 167

Query: 318 FTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSR 377
                 T  +   +  +L+ L +   ++    S + ++   + +++ L  +N+ +S+ + 
Sbjct: 168 ------TDLKPLANLTTLERLDISSNKV----SDISVLA-KLTNLESLIATNNQISDIT- 215

Query: 378 TLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTS 437
                L  L +L EL +  N L+      LA++T+L  LD+++NQ+       PL  LT 
Sbjct: 216 ----PLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA---PLSGLTK 266

Query: 438 IEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSS 497
           + +L L  N      ++ PL   + L   +   N++  +I    +L      L  L    
Sbjct: 267 LTELKLGANQIS---NISPLAGLTALTNLELNENQLE-DISPISNLK----NLTYL---- 314

Query: 498 GYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLP 557
                            L +  +S I          + + TKL++L   N+ +       
Sbjct: 315 ----------------TLYFNNISDISP--------VSSLTKLQRLFFYNNKVSDV--SS 348

Query: 558 IHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLD 617
           + +   +  L    N      PL     L+R+T   ++  A   +  +   N++    + 
Sbjct: 349 LANLTNINWLSAGHNQISDLTPLA---NLTRITQLGLNDQAWTNAPVNYKANVSIPNTVK 405

Query: 618 LSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIP 677
                L    P  ++ G  S     ++ N         ++  +  + +      F G + 
Sbjct: 406 NVTGALI--APATISDG-GSYTEPDITWNLPSYTN-EVSYTFSQPVTIGKGTTTFSGTVT 461

Query: 678 QSL 680
           Q L
Sbjct: 462 QPL 464

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  146 bits (371), Expect = 2e-37
 Identities = 91/483 (18%), Positives = 182/483 (37%), Gaps = 63/483 (13%)

Query: 97  FTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLT 156
            T   Q+ +L      I      + ++ +  L+NL  +N   N   +  ++ L  L+ L 
Sbjct: 42  QTDLDQVTTLQADRLGI------KSIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLV 93

Query: 157 SLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGN 216
            + ++ N++    DI  L +L +L  L +  N I           L  L NL   +LS N
Sbjct: 94  DILMNNNQIA---DITPLANLTNLTGLTLFNNQI------TDIDPLKNLTNLNRLELSSN 144

Query: 217 LFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQAC 276
             ++  +S+L+ L+SL+ L   +       D+K   +L+ LE LD+S N++ +  V    
Sbjct: 145 TISD--ISALSGLTSLQQLSFGNQV----TDLKPLANLTTLERLDISSNKVSDISVL--- 195

Query: 277 SGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLK 336
           + L  L  L      I D    +  +G   +L+ L L+ N   +             +L 
Sbjct: 196 AKLTNLESLIATNNQISD----ITPLGILTNLDELSLNGNQLKD-----IGTLASLTNLT 246

Query: 337 ELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMAD 396
           +L + + +I+            +  +  L L  + +SN S      L  L  L  L + +
Sbjct: 247 DLDLANNQISNLAPL-----SGLTKLTELKLGANQISNIS-----PLAGLTALTNLELNE 296

Query: 397 NDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEP 456
           N L    P  ++N+ +L  L +  N +      SP+  LT ++ L   +N       +  
Sbjct: 297 NQLEDISP--ISNLKNLTYLTLYFNNI---SDISPVSSLTKLQRLFFYNNKVS---DVSS 348

Query: 457 LFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLE 516
           L N + +    A +N+I+ ++    +LT    ++  L L+            +  + ++ 
Sbjct: 349 LANLTNINWLSAGHNQIS-DLTPLANLT----RITQLGLNDQAWTNAP----VNYKANVS 399

Query: 517 YVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQG 576
                            + +     +  +  +       +  ++  Q   +      F G
Sbjct: 400 IPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEV-SYTFSQPVTIGKGTTTFSG 458

Query: 577 HIP 579
            + 
Sbjct: 459 TVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  145 bits (368), Expect = 4e-37
 Identities = 102/536 (19%), Positives = 192/536 (35%), Gaps = 83/536 (15%)

Query: 234 SLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIR 293
           + +  D  +     +    +L+   +  +    + +     + + L +++ L   R+GI+
Sbjct: 6   ATITQDTPIN---QIFTDTALAEKMKTVLGKTNVTD---TVSQTDLDQVTTLQADRLGIK 59

Query: 294 DGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQ 353
                +  +    +L  ++ S N  T+          +   L ++ M++ +IA  T    
Sbjct: 60  S----IDGVEYLNNLTQINFSNNQLTDI-----TPLKNLTKLVDILMNNNQIADITPL-- 108

Query: 354 IIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSL 413
               ++ ++  L+L N+ +++        L  L +L  L ++ N +       L+ +TSL
Sbjct: 109 ---ANLTNLTGLTLFNNQITDID-----PLKNLTNLNRLELSSNTISDISA--LSGLTSL 158

Query: 414 RILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEI 473
           + L   +          PL +LT++E L +S N       +  L   + L+   A NN+I
Sbjct: 159 QQLSFGNQV----TDLKPLANLTTLERLDISSNKVS---DISVLAKLTNLESLIATNNQI 211

Query: 474 NAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWL 533
           + +I     LT     L  L L+              NQ       L  I          
Sbjct: 212 S-DITPLGILT----NLDELSLNG-------------NQ-------LKDIG--------T 238

Query: 534 LENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFN 593
           L + T L  L L N+ +      P+    +L  L +  N      PL     L+ LT   
Sbjct: 239 LASLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQISNISPLAG---LTALTNLE 293

Query: 594 ISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMF 653
           ++ N L+   P    N+  L +L L  N ++   P         L+ L   NN +     
Sbjct: 294 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVS---SLTKLQRLFFYNNKVSD--V 346

Query: 654 SRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHI 713
           S   NLTN+ WL    N      P  L+  + +  L L++ + +     +  N+++   +
Sbjct: 347 SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTV 404

Query: 714 IMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHG 769
                 +  P              DI+ N  S +    Y F     +        G
Sbjct: 405 KNVTGALIAPA--TISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTFSG 458

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  143 bits (363), Expect = 1e-36
 Identities = 101/497 (20%), Positives = 177/497 (35%), Gaps = 72/497 (14%)

Query: 345 IALNTSFLQIIG-ESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSL 403
           I  +T   QI    ++       L  ++V++           L  +  L      ++ S+
Sbjct: 8   ITQDTPINQIFTDTALAEKMKTVLGKTNVTDTV-----SQTDLDQVTTLQADRLGIK-SI 61

Query: 404 PWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRL 463
              +  + +L  ++ S+NQL      +PL +LT + D+++++N       + PL N + L
Sbjct: 62  D-GVEYLNNLTQINFSNNQLT---DITPLKNLTKLVDILMNNNQIA---DITPLANLTNL 114

Query: 464 KIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHI 523
                 NN+I  +I    +LT     L  L LSS   + I+    L     L+ +   + 
Sbjct: 115 TGLTLFNNQIT-DIDPLKNLT----NLNRLELSS---NTISDISALSGLTSLQQLSFGN- 165

Query: 524 KMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIG 583
           ++ +  P   L N T L +L + ++ +       +     L  L  + N      PL I 
Sbjct: 166 QVTDLKP---LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI- 219

Query: 584 DILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLAL 643
             L+ L   +++ N L      +  ++  L  LDL+NNQ++   P     G   L  L L
Sbjct: 220 --LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLS---GLTKLTELKL 272

Query: 644 SNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRW 703
             N +     S    LT L  L+L  N      P  +S   +L  L L  N++S   P  
Sbjct: 273 GANQISN--ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-- 326

Query: 704 LGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLS 763
           + +LT L+ +    N +     L    L  +  L    N IS   P              
Sbjct: 327 VSSLTKLQRLFFYNNKVSDVSSLA--NLTNINWLSAGHNQISDLTP-------------- 370

Query: 764 KNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQ 823
                         N   +  L L+         +    +S  + +      L    P  
Sbjct: 371 ------------LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL--IAPAT 416

Query: 824 LCRLNQLQLLDLSNNNL 840
           +         D++ N  
Sbjct: 417 ISDGGSYTEPDITWNLP 433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  141 bits (357), Expect = 9e-36
 Identities = 90/457 (19%), Positives = 166/457 (36%), Gaps = 66/457 (14%)

Query: 407 LANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIF 466
              +       +    +  ++       L  +  L       +   S++ +   + L   
Sbjct: 20  DTALAEKMKTVLGKTNVTDTV---SQTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQI 73

Query: 467 DAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMN 526
           +  NN++  +I    +LT    +L  +L+++     I     L N  +L  + L + ++ 
Sbjct: 74  NFSNNQLT-DITPLKNLT----KLVDILMNNNQ---IADITPLANLTNLTGLTLFNNQIT 125

Query: 527 EEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDIL 586
           +  P   L+N T L +L L ++++       +     L+ L    N      PL     L
Sbjct: 126 DIDP---LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLKPLAN---L 176

Query: 587 SRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNN 646
           + L   +IS N +  S  S    +  L+ L  +NNQ++   P        +L  L+L+ N
Sbjct: 177 TTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITPLG---ILTNLDELSLNGN 231

Query: 647 NLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGN 706
            L+        +LTNL  L L  N      P  LS  + L  L L  N +S   P  L  
Sbjct: 232 QLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAG 285

Query: 707 LTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNM 766
           LT L ++ + +N +E   P+    L+ L  L +  NNIS   P                 
Sbjct: 286 LTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP----------------- 326

Query: 767 LHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCR 826
                      +   L  L    N ++      +  L+ +++L   HN +    P+    
Sbjct: 327 ---------VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTPLA--N 373

Query: 827 LNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSL 863
           L ++  L L++        +   N ++     N +  
Sbjct: 374 LTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGA 410

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  137 bits (348), Expect = 1e-34
 Identities = 101/448 (22%), Positives = 165/448 (36%), Gaps = 68/448 (15%)

Query: 534 LENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFN 593
                +  +  L   ++     +      Q+  L   +   +    +E    L+ LT  N
Sbjct: 20  DTALAEKMKTVLGKTNVTDT--VSQTDLDQVTTLQADRLGIKSIDGVEY---LNNLTQIN 74

Query: 594 ISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMF 653
            S N L    P    N+  L  + ++NNQ+    P  LA    +L  L L NN +     
Sbjct: 75  FSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LA-NLTNLTGLTLFNNQITD--I 127

Query: 654 SRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHI 713
               NLTNL  L+L  N        +LS  +SLQ L   N  ++   P  L NLT L  +
Sbjct: 128 DPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQ-VTDLKP--LANLTTLERL 182

Query: 714 IMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKE 773
            +  N +     L   +L  L+ L  ++N IS  +        ++++ L+ N L      
Sbjct: 183 DISSNKVSDISVLA--KLTNLESLIATNNQIS-DITPLGILTNLDELSLNGNQLK---DI 236

Query: 774 GTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLL 833
           GT  +   L  LDL+ N ++   P  + GL++L+ L L  N +    P+    L  L  L
Sbjct: 237 GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA--GLTALTNL 292

Query: 834 DLSNNNLHG--HIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFT 891
           +L+ N L     I +  + T L   +NN S + P  +                       
Sbjct: 293 ELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSL---------------------- 330

Query: 892 TKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSN 951
                        + L  L    N++       + NLT I  L+  HN ++   P   +N
Sbjct: 331 -------------TKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LAN 373

Query: 952 LRNIESLDLSYNKLSWKIPYQLVELNTL 979
           L  I  L L+    +         ++  
Sbjct: 374 LTRITQLGLNDQAWTNAPVNYKANVSIP 401

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.7 bits (122), Expect = 2e-06
 Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 6/88 (6%)

Query: 907 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 966
           ++ L      +       +  L  +  +N S+N L    P    NL  +  + ++ N+++
Sbjct: 48  VTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA 103

Query: 967 WKIPYQLVELNTLAVFSVAYNNLSGKIP 994
              P  L  L  L   ++  N ++   P
Sbjct: 104 DITP--LANLTNLTGLTLFNNQITDIDP 129

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  154 bits (391), Expect = 1e-39
 Identities = 100/533 (18%), Positives = 191/533 (35%), Gaps = 60/533 (11%)

Query: 128 LSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGR 187
            + +K L+L  N         L   ++L  L L ++R+  +I+     SL  LE L++  
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSD 83

Query: 188 NMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNN-SILSSLARLSSLRSLLLYDNRLEGSI 246
           N +              L++LK  +L GN +    + S    L++L++L + +      I
Sbjct: 84  NHLSSL----SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI 139

Query: 247 DVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFP 306
              +F  L++L EL++    + N++  Q+   +R + +L L         ++        
Sbjct: 140 RRIDFAGLTSLNELEIKALSLRNYQ-SQSLKSIRDIHHLTLHLSESAFLLEIFAD--ILS 196

Query: 307 SLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARI---------ALNTSFLQIIGE 357
           S+  L+L   N      +          +K+L    + +          L    L++   
Sbjct: 197 SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV 256

Query: 358 SMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILD 417
                    L + + S +    + G    V ++ LH+    L   L    + +  ++ + 
Sbjct: 257 EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRIT 316

Query: 418 VSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNH--SRLKIFDAENNEINA 475
           V +++ +  +  S   HL S+E L LS+N                  L+      N +  
Sbjct: 317 VENSK-VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR- 374

Query: 476 EIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLE 535
            + ++  +      L SL +S              N                +   W   
Sbjct: 375 SMQKTGEILLTLKNLTSLDIS-------------RNT----------FHPMPDSCQWP-- 409

Query: 536 NNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNIS 595
              K+R L+L +  +     +     + L +LDVS NN            L RL    IS
Sbjct: 410 --EKMRFLNLSSTGIR---VVKTCIPQTLEVLDVSNNNLD-----SFSLFLPRLQELYIS 459

Query: 596 MNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNL 648
            N L  ++P +      L  + +S NQL   +P+ +     SL+ + L  N  
Sbjct: 460 RNKLK-TLPDA-SLFPVLLVMKISRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  153 bits (388), Expect = 4e-39
 Identities = 89/560 (15%), Positives = 178/560 (31%), Gaps = 81/560 (14%)

Query: 411 TSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAEN 470
            +++ LD+S N+ I  I    L    +++ LIL  +     I  +  ++   L+  D  +
Sbjct: 26  AAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSRINT-IEGDAFYSLGSLEHLDLSD 83

Query: 471 NEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFP 530
           N +++  + S     P   L+ L L       +       N  +L+ +R+ +++   E  
Sbjct: 84  NHLSS--LSSSWFG-PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR 140

Query: 531 NWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLT 590
                  T L +L +   SL       + S + +  L +  +     +     DILS + 
Sbjct: 141 RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVR 199

Query: 591 VFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEG 650
              +    L     S          +     + +  + +      + L    L  + +E 
Sbjct: 200 YLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS-VLTDESFNELLKLLRYILELSEVE- 257

Query: 651 HMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVL 710
                +  L  L       +  V E+ +   +  +++ L +    L   +      L  +
Sbjct: 258 ---FDDCTLNGLGDFNPSESDVVSELGKV--ETVTIRRLHIPQFYLFYDLSTVYSLLEKV 312

Query: 711 RHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQ 770
           + I +  + +          L+ L+ LD+S+N +                          
Sbjct: 313 KRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV----------------------EEY 350

Query: 771 LKEGTFFNCLT-LMILDLSYNHLN--GNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRL 827
           LK          L  L LS NHL       + +  L  L+ L ++ N     +P      
Sbjct: 351 LKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWP 409

Query: 828 NQLQLLDLSNNNLHGHIPSC-FDN-TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQIL 885
            +++ L+LS+  +   + +C       L    NN  S   F                   
Sbjct: 410 EKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLDSFSLFLPR---------------- 452

Query: 886 ESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPI 945
                                L  L +S N+L   +P        +  + +S N L    
Sbjct: 453 ---------------------LQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVP 489

Query: 946 PSTFSNLRNIESLDLSYNKL 965
              F  L +++ + L  N  
Sbjct: 490 DGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  152 bits (385), Expect = 8e-39
 Identities = 90/521 (17%), Positives = 197/521 (37%), Gaps = 45/521 (8%)

Query: 305 FPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIAL--NTSFLQIIGESMPSI 362
             ++ +LDLS+N  T              +L+ L +  +RI      +F      S+ S+
Sbjct: 25  TAAMKSLDLSFNKITYI---GHGDLRACANLQVLILKSSRINTIEGDAF-----YSLGSL 76

Query: 363 QYLSLSNSSVSNNSRTLDQG-LCPLVHLQELHMADNDLRG-SLPWCLANMTSLRILDVSS 420
           ++L LS+    N+  +L      PL  L+ L++  N  +   +     N+T+L+ L + +
Sbjct: 77  EHLDLSD----NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN 132

Query: 421 NQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIES 480
            +    I       LTS+ +L +     +     + L +   +       +E    ++E 
Sbjct: 133 VETFSEIRRIDFAGLTSLNELEIKALSLRN-YQSQSLKSIRDIHHLTLHLSESA-FLLEI 190

Query: 481 HSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKL 540
            +    + +   L  ++  R   +          ++ +      + +E  N LL+    +
Sbjct: 191 FADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI 250

Query: 541 RQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALD 600
            +LS               +   L   + S+++    +          +   +I    L 
Sbjct: 251 LELS--------EVEFDDCTLNGLGDFNPSESDVVSELG---KVETVTIRRLHIPQFYLF 299

Query: 601 GSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLE---GHMFSRNF 657
             + + +  +  ++ + + N+++   +P   +    SL  L LS N +        +   
Sbjct: 300 YDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKG 358

Query: 658 NLTNLIWLQLEGNHF--VGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIM 715
              +L  L L  NH   + +  + L    +L  L +S N+    +P        +R + +
Sbjct: 359 AWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNL 417

Query: 716 PKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGT 775
               I     ++ C  + L++LD+S+NN+  S         ++++++S+N L   L + +
Sbjct: 418 SSTGIRV---VKTCIPQTLEVLDVSNNNLD-SFSL--FLPRLQELYISRNKLK-TLPDAS 470

Query: 776 FFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNL 816
            F  L   ++ +S N L        D L+ L  + L  N  
Sbjct: 471 LFPVLL--VMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  143 bits (363), Expect = 5e-36
 Identities = 100/557 (17%), Positives = 199/557 (35%), Gaps = 84/557 (15%)

Query: 152 LSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVF 211
            +++ SLDLS N++   I   +L +  +L+ L +  + I+             L +L+  
Sbjct: 25  TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTI----EGDAFYSLGSLEHL 79

Query: 212 DLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFE 271
           DLS N  ++   S    LSSL+ L L  N  +       F +L+NL+ L +   E  +  
Sbjct: 80  DLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI 139

Query: 272 VPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPH 331
                +GL  L+ L +  + +R+     QS+ S   ++ L L  +     +         
Sbjct: 140 RRIDFAGLTSLNELEIKALSLRNYQS--QSLKSIRDIHHLTLHLSESAFLLEIF---ADI 194

Query: 332 FKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNS-RTLDQGLCPLVHLQ 390
             S++ L + D  +A        + E    ++ L+   S +++ S   L + L  ++ L 
Sbjct: 195 LSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS 254

Query: 391 ELHMADNDLRGSLPWCLA-----------NMTSLRILDVSSNQLIGSISSSPLIHLTSIE 439
           E+   D  L G   +  +              ++R L +     +    S+    L  ++
Sbjct: 255 EVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY-LFYDLSTVYSLLEKVK 313

Query: 440 DLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGY 499
            + + ++   + +      +   L+  D   N +  E +++ +                 
Sbjct: 314 RITVENSKVFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSA----------------- 355

Query: 500 RDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIH 559
                          L+ + LS         N L      +++   +  +L         
Sbjct: 356 --------CKGAWPSLQTLVLSQ--------NHL----RSMQKTGEILLTL--------- 386

Query: 560 SHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLS 619
             K L  LD+S+N F   +P        ++   N+S   +   + +       L+ LD+S
Sbjct: 387 --KNLTSLDISRNTFH-PMPDSC-QWPEKMRFLNLSSTGIR-VVKT--CIPQTLEVLDVS 439

Query: 620 NNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQS 679
           NN L       L      L+ L +S N L             L+ +++  N         
Sbjct: 440 NNNLD-SFSLFL----PRLQELYISRNKL--KTLPDASLFPVLLVMKISRNQLKSVPDGI 492

Query: 680 LSKCSSLQGLFLSNNSL 696
             + +SLQ ++L  N  
Sbjct: 493 FDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  142 bits (360), Expect = 1e-35
 Identities = 97/594 (16%), Positives = 182/594 (30%), Gaps = 91/594 (15%)

Query: 153 SSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFD 212
            +    D  +     SI          ++ L++  N I       G   L    NL+V  
Sbjct: 5   DASGVCDGRSRSFT-SIPS---GLTAAMKSLDLSFNKITYI----GHGDLRACANLQVLI 56

Query: 213 LSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEV 272
           L  +  N     +   L SL  L L DN L  S+    F  LS+L+ L++  N      V
Sbjct: 57  LKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGV 115

Query: 273 PQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHF 332
                 L                           +L TL +        +      F   
Sbjct: 116 TSLFPNL--------------------------TNLQTLRIGNVETFSEIRRID--FAGL 147

Query: 333 KSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQEL 392
            SL EL +    +    ++     +S+  I +L+L  S  +            L  ++ L
Sbjct: 148 TSLNELEIKALSL---RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADI---LSSVRYL 201

Query: 393 HMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPI 452
            + D +L       L        +   + +    ++      L  +   IL  +  +   
Sbjct: 202 ELRDTNLARFQFSPLPVDEVSSPMKKLAFR-GSVLTDESFNELLKLLRYILELSEVEFDD 260

Query: 453 SLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQ 512
                   + L  F+   +++ +E+ +  ++T     ++ L +   Y             
Sbjct: 261 -----CTLNGLGDFNPSESDVVSELGKVETVT-----IRRLHIPQFYLFYD-LSTVYSLL 309

Query: 513 HDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKN 572
             ++ + + + K+    P    ++   L  L L              S   +    +  +
Sbjct: 310 EKVKRITVENSKVF-LVPCSFSQHLKSLEFLDL--------------SENLMVEEYLKNS 354

Query: 573 NFQGHIPLEIGDILSRLTVFNISMNALD--GSIPSSFGNMNFLQFLDLSNNQLTGEIPEH 630
             +G            L    +S N L            +  L  LD+S N     +P+ 
Sbjct: 355 ACKGA--------WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDS 405

Query: 631 LAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLF 690
                  +R L LS+  +      +      L  L +  N+        L     LQ L+
Sbjct: 406 CQ-WPEKMRFLNLSSTGIR---VVKTCIPQTLEVLDVSNNNL-DSFSLFL---PRLQELY 457

Query: 691 LSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNI 744
           +S N L   +P       VL  + + +N ++      F +L  LQ + +  N  
Sbjct: 458 ISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  142 bits (359), Expect = 2e-35
 Identities = 91/488 (18%), Positives = 175/488 (35%), Gaps = 40/488 (8%)

Query: 388 HLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNH 447
            ++ L ++ N +       L    +L++L + S++ I +I       L S+E L LSDNH
Sbjct: 27  AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSDNH 85

Query: 448 FQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPK 507
               +S       S LK  +   N      +   SL      LQ+L + +          
Sbjct: 86  LSS-LSSSWFGPLSSLKYLNLMGNPYQT--LGVTSLFPNLTNLQTLRIGNVETFSEIRRI 142

Query: 508 FLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLL 567
                  L  + +  + +   + +  L++   +  L+L          +       +R L
Sbjct: 143 DFAGLTSLNELEIKALSL-RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYL 201

Query: 568 DVSKNNFQG--HIPLEIGDILSRLTVFNISMNALDG-------SIPSSFGNMNFLQFLDL 618
           ++   N       PL + ++ S +       + L          +      ++ ++F D 
Sbjct: 202 ELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261

Query: 619 SNNQLT-------GEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNH 671
           + N L          + E   +  V++R L +    L   + +    L  +  + +E + 
Sbjct: 262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK 321

Query: 672 FVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRW---LGNLTVLRHIIMPKNHIE--GPIPL 726
                        SL+ L LS N +  +  +     G    L+ +++ +NH+        
Sbjct: 322 VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGE 381

Query: 727 EFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCL--TLMI 784
               L+ L  LDIS N       SC     +  ++LS   +           C+  TL +
Sbjct: 382 ILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR------VVKTCIPQTLEV 435

Query: 785 LDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHI 844
           LD+S N+L+ +       L +L  L ++ N L+  +P        L ++ +S N L    
Sbjct: 436 LDVSNNNLD-SFS---LFLPRLQELYISRNKLK-TLP-DASLFPVLLVMKISRNQLKSVP 489

Query: 845 PSCFDNTT 852
              FD  T
Sbjct: 490 DGIFDRLT 497

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  141 bits (358), Expect = 2e-35
 Identities = 84/460 (18%), Positives = 159/460 (34%), Gaps = 68/460 (14%)

Query: 558 IHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLD 617
           + +   L++L +  +     I  +    L  L   ++S N L     S FG ++ L++L+
Sbjct: 46  LRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104

Query: 618 LSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNF-NLTNLIWLQLEGNHFVGEI 676
           L  N         L     +L++L + N      +   +F  LT+L  L+++        
Sbjct: 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ 164

Query: 677 PQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEG-----------PIP 725
            QSL     +  L L  +  +  +  +   L+ +R++ +   ++               P
Sbjct: 165 SQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSP 224

Query: 726 LEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNML-------HGQLKEGTFFN 778
           ++    R   + D S N +   L    +   +E    + N L          + E     
Sbjct: 225 MKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVE 284

Query: 779 CLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCR-LNQLQLLDLSN 837
            +T+  L +   +L  ++      L ++  + + ++ +   VP    + L  L+ LDLS 
Sbjct: 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSE 343

Query: 838 NNL---HGHIPSCFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDF 890
           N +   +    +C        TL    N+  S+Q      + +                 
Sbjct: 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL----------------- 386

Query: 891 TTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFS 950
                         +L S LD+S N     +P       K++ LNLS   +         
Sbjct: 387 -------------KNLTS-LDISRNT-FHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQ 431

Query: 951 NLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLS 990
            L   E LD+S N L       L  L  L    ++ N L 
Sbjct: 432 TL---EVLDVSNNNLD-SFSLFLPRLQEL---YISRNKLK 464

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  140 bits (354), Expect = 8e-35
 Identities = 72/447 (16%), Positives = 144/447 (32%), Gaps = 53/447 (11%)

Query: 555 RLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQ 614
            +P      ++ LD+S N    +I        + L V  +  + ++     +F ++  L+
Sbjct: 19  SIPSGLTAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLE 77

Query: 615 FLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNF-NLTNLIWLQLEGNHFV 673
            LDLS+N L+  +         SL+ L L  N  +    +  F NLTNL  L++      
Sbjct: 78  HLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF 136

Query: 674 GEIP-QSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLR 732
            EI     +  +SL  L +   SL     + L ++  + H+ +  +     + +    L 
Sbjct: 137 SEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILS 196

Query: 733 ILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHL 792
            ++ L++ D N++    S      +             L + +F   L L+   L  + +
Sbjct: 197 SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV 256

Query: 793 NGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN-- 850
                   D  +         +  +    +       ++ L +    L   + + +    
Sbjct: 257 E------FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLE 310

Query: 851 --TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLS 908
               +    +    +                                           L 
Sbjct: 311 KVKRITVENSKVFLVPC--------------------SFSQHLKS-------------LE 337

Query: 909 GLDLSCNRLIGHIPPQ---IGNLTKIQTLNLSHNNLA--GPIPSTFSNLRNIESLDLSYN 963
            LDLS N ++          G    +QTL LS N+L            L+N+ SLD+S N
Sbjct: 338 FLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN 397

Query: 964 KLSWKIPYQLVELNTLAVFSVAYNNLS 990
                +P        +   +++   + 
Sbjct: 398 TFHP-MPDSCQWPEKMRFLNLSSTGIR 423

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  138 bits (350), Expect = 2e-34
 Identities = 88/538 (16%), Positives = 171/538 (31%), Gaps = 75/538 (13%)

Query: 92  LNASLFTPFQQLESLDLRDNDIAGCVENEGLER--LSRLSNLKMLNLVGNLFNNSILSSL 149
           +          L+ L L+ + I        +E      L +L+ L+L  N  ++   S  
Sbjct: 41  IGHGDLRACANLQVLILKSSRI------NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWF 94

Query: 150 ARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLK 209
             LSSL  L+L  N  +         +L +L+ L IG       +        + L +L 
Sbjct: 95  GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI---RRIDFAGLTSLN 151

Query: 210 VFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDN 269
             ++      N    SL  +  +  L L+ +     +     D LS++  L++    +  
Sbjct: 152 ELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLAR 210

Query: 270 FEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGF 329
           F+           S +  L               +F      D S+N   + +    +  
Sbjct: 211 FQ-FSPLPVDEVSSPMKKL---------------AFRGSVLTDESFNELLKLLRYILELS 254

Query: 330 P-HFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVH 388
              F       + D   + +    ++      +I+ L +    +  +   L      L  
Sbjct: 255 EVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYD---LSTVYSLLEK 311

Query: 389 LQELHMADNDLRGSLPWCLANMTSLRILDVSSNQL--IGSISSSPLIHLTSIEDLILSDN 446
           ++ + + ++ +         ++ SL  LD+S N +      +S+      S++ L+LS N
Sbjct: 312 VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371

Query: 447 HFQ-IPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITF 505
           H + +  + E L     L   D   N  +                               
Sbjct: 372 HLRSMQKTGEILLTLKNLTSLDISRNTFH-----------------------------PM 402

Query: 506 PKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLR 565
           P        + ++ LS   +              L  L + N++L       +    +L+
Sbjct: 403 PDSCQWPEKMRFLNLSSTGIRVVKTCIP----QTLEVLDVSNNNLD---SFSLFLP-RLQ 454

Query: 566 LLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQL 623
            L +S+N  +    L    +   L V  IS N L       F  +  LQ + L  N  
Sbjct: 455 ELYISRNKLKT---LPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  131 bits (332), Expect = 4e-32
 Identities = 64/387 (16%), Positives = 119/387 (30%), Gaps = 28/387 (7%)

Query: 613 LQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNN---LEGHMFSRNFNLTNLIWLQLEG 669
               D  +   T  IP  L     +++SL LS N    +            NL  L L+ 
Sbjct: 7   SGVCDGRSRSFT-SIPSGL---TAAMKSLDLSFNKITYIGHGDLR---ACANLQVLILKS 59

Query: 670 NHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHI-EGPIPLEF 728
           +        +     SL+ L LS+N LS     W G L+ L+++ +  N      +   F
Sbjct: 60  SRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 119

Query: 729 CQLRILQILDISDNNISGSLPSCY--DFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILD 786
             L  LQ L I +      +          + ++ +    L    +  +  +   +  L 
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLT 178

Query: 787 LSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPS 846
           L  +     +    D LS + YL L   NL       L        +             
Sbjct: 179 LHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE 238

Query: 847 CFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSL 906
            F+   L +       L   E     + G+      +     +                 
Sbjct: 239 SFNE--LLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVT--------- 287

Query: 907 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 966
           +  L +    L   +      L K++ + + ++ +     S   +L+++E LDLS N + 
Sbjct: 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV 347

Query: 967 WKIPYQLVELNTLA---VFSVAYNNLS 990
            +                  ++ N+L 
Sbjct: 348 EEYLKNSACKGAWPSLQTLVLSQNHLR 374

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 65.5 bits (160), Expect = 6e-11
 Identities = 35/220 (15%), Positives = 67/220 (30%), Gaps = 42/220 (19%)

Query: 777 FNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLS 836
            +C    + D        +IP  +   + +  L L+ N +       L     LQ+L L 
Sbjct: 2   LSCDASGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILK 58

Query: 837 NNNLHGHIPSCFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTT 892
           ++ ++      F +      L    N+ SSL                        F   +
Sbjct: 59  SSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS--------------------SWFGPLS 98

Query: 893 KSITYTYQGRVPSLLSGLDLSCNRLIG-HIPPQIGNLTKIQTLNLSHNNLAGPIP-STFS 950
                         L  L+L  N      +     NLT +QTL + +      I    F+
Sbjct: 99  S-------------LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 145

Query: 951 NLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLS 990
            L ++  L++    L       L  +  +   ++  +  +
Sbjct: 146 GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 60.9 bits (148), Expect = 2e-09
 Identities = 42/195 (21%), Positives = 77/195 (39%), Gaps = 25/195 (12%)

Query: 73  MGRVVVLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLK 132
           +  +  LDLS+    E +  N++    +  L++L L  N +    +   +  L  L NL 
Sbjct: 333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEI--LLTLKNLT 390

Query: 133 MLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDK 192
            L++  N F+  +  S      +  L+LS+  ++  +        + LE L++  N +D 
Sbjct: 391 SLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVK---TCIPQTLEVLDVSNNNLDS 445

Query: 193 FVVSKGPKRLSRLN----------------NLKVFDLSGNLFNNSILSSLARLSSLRSLL 236
           F  S    RL  L                  L V  +S N   +       RL+SL+ + 
Sbjct: 446 F--SLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIW 503

Query: 237 LYDNRLEGSIDVKEF 251
           L+ N  + S    ++
Sbjct: 504 LHTNPWDCSCPRIDY 518

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  147 bits (374), Expect = 6e-39
 Identities = 74/374 (19%), Positives = 147/374 (39%), Gaps = 49/374 (13%)

Query: 100 FQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLD 159
             +     L+   +        +     L ++  L + G    +  +  +  L++L  L+
Sbjct: 21  LAEGIRAVLQKASV------TDVVTQEELESITKLVVAGEKVAS--IQGIEYLTNLEYLN 72

Query: 160 LSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFN 219
           L+ N++    DI  L +L  L  L IG N I           L  L NL+   L+ +  +
Sbjct: 73  LNGNQIT---DISPLSNLVKLTNLYIGTNKI------TDISALQNLTNLRELYLNEDNIS 123

Query: 220 NSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGL 279
           +  +S LA L+ + SL L  N     +      +++ L  L ++ +++ +       + L
Sbjct: 124 D--ISPLANLTKMYSLNLGANHNLSDL--SPLSNMTGLNYLTVTESKVKDVT---PIANL 176

Query: 280 RKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELY 339
             L  L L    I D    +  + S  SL+      N  T+          +   L  L 
Sbjct: 177 TDLYSLSLNYNQIED----ISPLASLTSLHYFTAYVNQITD-----ITPVANMTRLNSLK 227

Query: 340 MDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDL 399
           + + +I   +        ++  + +L +  + +S+ +      +  L  L+ L++  N +
Sbjct: 228 IGNNKITDLSPL-----ANLSQLTWLEIGTNQISDIN-----AVKDLTKLKMLNVGSNQI 277

Query: 400 RGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFN 459
                  L N++ L  L +++NQ +G+     +  LT++  L LS NH      + PL +
Sbjct: 278 SDISV--LNNLSQLNSLFLNNNQ-LGNEDMEVIGGLTNLTTLFLSQNHIT---DIRPLAS 331

Query: 460 HSRLKIFDAENNEI 473
            S++   D  N  I
Sbjct: 332 LSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  144 bits (367), Expect = 5e-38
 Identities = 74/371 (19%), Positives = 142/371 (38%), Gaps = 49/371 (13%)

Query: 103 LESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSA 162
             +L      I        +   + L+      L      +  + +   L S+T L ++ 
Sbjct: 2   AATLATLPAPI------NQIFPDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAG 53

Query: 163 NRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSI 222
            ++     I+ ++ L +LE LN+  N I           LS L  L    +  N    + 
Sbjct: 54  EKVA---SIQGIEYLTNLEYLNLNGNQI------TDISPLSNLVKLTNLYIGTNKI--TD 102

Query: 223 LSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKL 282
           +S+L  L++LR L L ++ +    D+    +L+ +  L++  N           S +  L
Sbjct: 103 ISALQNLTNLRELYLNEDNIS---DISPLANLTKMYSLNLGANHN--LSDLSPLSNMTGL 157

Query: 283 SYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDD 342
           +YL +    ++D    +  + +   L +L L+YN   +             SL       
Sbjct: 158 NYLTVTESKVKD----VTPIANLTDLYSLSLNYNQIED-----ISPLASLTSLHYFTAYV 208

Query: 343 ARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGS 402
            +I   T        +M  +  L + N+ +++ S      L  L  L  L +  N +   
Sbjct: 209 NQITDITPV-----ANMTRLNSLKIGNNKITDLS-----PLANLSQLTWLEIGTNQIS-D 257

Query: 403 LPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSR 462
           +   + ++T L++L+V SNQ I  I  S L +L+ +  L L++N       +E +   + 
Sbjct: 258 IN-AVKDLTKLKMLNVGSNQ-ISDI--SVLNNLSQLNSLFLNNNQLGN-EDMEVIGGLTN 312

Query: 463 LKIFDAENNEI 473
           L       N I
Sbjct: 313 LTTLFLSQNHI 323

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  131 bits (332), Expect = 2e-33
 Identities = 74/390 (18%), Positives = 140/390 (35%), Gaps = 63/390 (16%)

Query: 605 SSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIW 664
               ++       L    +T  + +       S+  L ++   +          LTNL +
Sbjct: 16  FPDADLAEGIRAVLQKASVTDVVTQE---ELESITKLVVAGEKVAS--IQGIEYLTNLEY 70

Query: 665 LQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPI 724
           L L GN      P  LS    L  L++  N ++      L NLT LR + + +++I    
Sbjct: 71  LNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDIS 126

Query: 725 PLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLT-LM 783
           PL    L  +  L++  N+    L    +   +  + ++++    ++K+ T    LT L 
Sbjct: 127 PLA--NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES----KVKDVTPIANLTDLY 180

Query: 784 ILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGH 843
            L L+YN +    P  +  L+ L Y     N +    P  +  + +L  L + NN +   
Sbjct: 181 SLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD- 235

Query: 844 IPSCFDNTTLHE---RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQ 900
           +    + + L       N  S +   +                                 
Sbjct: 236 LSPLANLSQLTWLEIGTNQISDINAVKDL------------------------------- 264

Query: 901 GRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDL 960
               + L  L++  N+ I  I   + NL+++ +L L++N L          L N+ +L L
Sbjct: 265 ----TKLKMLNVGSNQ-ISDISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFL 318

Query: 961 SYNKLSWKIPYQLVELNTLAVFSVAYNNLS 990
           S N ++   P  L  L+ +     A   + 
Sbjct: 319 SQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  131 bits (331), Expect = 3e-33
 Identities = 83/379 (21%), Positives = 136/379 (35%), Gaps = 34/379 (8%)

Query: 367 LSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGS 426
            +  +              L       +    +   +      + S+  L V+  + + S
Sbjct: 2   AATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEK-VAS 58

Query: 427 ISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTP 486
           I    + +LT++E L L+ N       + PL N  +L       N+I  +I    +LT  
Sbjct: 59  IQ--GIEYLTNLEYLNLNGNQIT---DISPLSNLVKLTNLYIGTNKIT-DISALQNLT-- 110

Query: 487 NFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLV 546
              L+ L L     D I+    L N   +  + L       +     L N T L  L++ 
Sbjct: 111 --NLRELYL---NEDNISDISPLANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVT 163

Query: 547 NDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSS 606
              +      PI +   L  L ++ N  +   PL     L+ L  F   +N +    P  
Sbjct: 164 ESKVKDVT--PIANLTDLYSLSLNYNQIEDISPL---ASLTSLHYFTAYVNQITDITP-- 216

Query: 607 FGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQ 666
             NM  L  L + NN++T   P         L  L +  N +     +   +LT L  L 
Sbjct: 217 VANMTRLNSLKIGNNKITDLSPLA---NLSQLTWLEIGTNQISD--INAVKDLTKLKMLN 271

Query: 667 LEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPL 726
           +  N         L+  S L  LFL+NN L  +    +G LT L  + + +NHI    PL
Sbjct: 272 VGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPL 329

Query: 727 EFCQLRILQILDISDNNIS 745
               L  +   D ++  I 
Sbjct: 330 A--SLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  130 bits (329), Expect = 5e-33
 Identities = 68/391 (17%), Positives = 147/391 (37%), Gaps = 52/391 (13%)

Query: 155 LTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLS 214
             +L      +     I     L +  +  + +  +              L ++    ++
Sbjct: 2   AATLATLPAPIN---QIFPDADLAEGIRAVLQKASV------TDVVTQEELESITKLVVA 52

Query: 215 GNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQ 274
           G    +  +  +  L++L  L L  N++    D+    +L  L  L +  N+I +     
Sbjct: 53  GEKVAS--IQGIEYLTNLEYLNLNGNQIT---DISPLSNLVKLTNLYIGTNKITDIS--- 104

Query: 275 ACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKS 334
           A   L  L  L+L    I D    +  + +   + +L+L  N+    ++       +   
Sbjct: 105 ALQNLTNLRELYLNEDNISD----ISPLANLTKMYSLNLGANHNLSDLS----PLSNMTG 156

Query: 335 LKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHM 394
           L  L + ++++   T        ++  +  LSL+     N    +   L  L  L     
Sbjct: 157 LNYLTVTESKVKDVTPI-----ANLTDLYSLSLNY----NQIEDIS-PLASLTSLHYFTA 206

Query: 395 ADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISL 454
             N +    P  +ANMT L  L + +N++      SPL +L+ +  L +  N       +
Sbjct: 207 YVNQITDITP--VANMTRLNSLKIGNNKI---TDLSPLANLSQLTWLEIGTNQIS---DI 258

Query: 455 EPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHD 514
             + + ++LK+ +  +N+I+ +I   ++L+    QL SL L++         + +    +
Sbjct: 259 NAVKDLTKLKMLNVGSNQIS-DISVLNNLS----QLNSLFLNNNQLGNED-MEVIGGLTN 312

Query: 515 LEYVRLSHIKMNEEFPNWLLENNTKLRQLSL 545
           L  + LS   + +  P   L + +K+     
Sbjct: 313 LTTLFLSQNHITDIRP---LASLSKMDSADF 340

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  127 bits (321), Expect = 6e-32
 Identities = 76/400 (19%), Positives = 154/400 (38%), Gaps = 59/400 (14%)

Query: 441 LILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYR 500
           L            + P  + +       +   +  +++    L      +  L+++    
Sbjct: 5   LATLPAPIN---QIFPDADLAEGIRAVLQKASVT-DVVTQEELE----SITKLVVAG--- 53

Query: 501 DGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHS 560
           + +   + +    +LEY+ L+  ++ +  P   L N  KL  L +  + +       + +
Sbjct: 54  EKVASIQGIEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKITDI--SALQN 108

Query: 561 HKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSN 620
              LR L ++++N     PL     L+++   N+  N    S  S   NM  L +L ++ 
Sbjct: 109 LTNLRELYLNEDNISDISPL---ANLTKMYSLNLGANHN-LSDLSPLSNMTGLNYLTVTE 164

Query: 621 NQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSL 680
           +++    P  +A     L SL+L+ N +E    S   +LT+L +     N      P  +
Sbjct: 165 SKVKDVTP--IA-NLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITDITP--V 217

Query: 681 SKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDIS 740
           +  + L  L + NN ++   P  L NL+ L  + +  N I     ++   L  L++L++ 
Sbjct: 218 ANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINAVK--DLTKLKMLNVG 273

Query: 741 DNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV 800
            N IS  +                             N   L  L L+ N L     + +
Sbjct: 274 SNQIS-DISV-------------------------LNNLSQLNSLFLNNNQLGNEDMEVI 307

Query: 801 DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNL 840
            GL+ L+ L L+ N++    P+    L+++   D +N  +
Sbjct: 308 GGLTNLTTLFLSQNHITDIRPLA--SLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  123 bits (312), Expect = 1e-30
 Identities = 71/386 (18%), Positives = 133/386 (34%), Gaps = 63/386 (16%)

Query: 613 LQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHF 672
              L      +    P+             L   ++          L ++  L + G   
Sbjct: 2   AATLATLPAPINQIFPD---ADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKV 56

Query: 673 VGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLR 732
                Q +   ++L+ L L+ N ++   P  L NL  L ++ +  N I     L+   L 
Sbjct: 57  --ASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISALQ--NLT 110

Query: 733 ILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHL 792
            L+ L ++++NIS  +    +   +  ++L  N     L      N   L  L ++ + +
Sbjct: 111 NLRELYLNEDNIS-DISPLANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKV 167

Query: 793 NGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN-- 850
               P  +  L+ L  L L +N +E   P  L  L  L       N +    P    N  
Sbjct: 168 KDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMT 221

Query: 851 --TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLS 908
              +L    N  + L P                   L                     L+
Sbjct: 222 RLNSLKIGNNKITDLSPLAN----------------LSQ-------------------LT 246

Query: 909 GLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWK 968
            L++  N++       + +LTK++ LN+  N ++    S  +NL  + SL L+ N+L  +
Sbjct: 247 WLEIGTNQISD--INAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNE 302

Query: 969 IPYQLVELNTLAVFSVAYNNLSGKIP 994
               +  L  L    ++ N+++   P
Sbjct: 303 DMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  123 bits (310), Expect = 2e-30
 Identities = 73/356 (20%), Positives = 131/356 (36%), Gaps = 29/356 (8%)

Query: 490 LQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDS 549
             +L       + I     L          L    + +       E    + +L +  + 
Sbjct: 2   AATLATLPAPINQIFPDADLAE---GIRAVLQKASVTDVVT---QEELESITKLVVAGEK 55

Query: 550 LVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGN 609
           +       I     L  L+++ N      PL     L +LT   I  N +  +  S+  N
Sbjct: 56  VASI--QGIEYLTNLEYLNLNGNQITDISPLSN---LVKLTNLYIGTNKI--TDISALQN 108

Query: 610 MNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEG 669
           +  L+ L L+ + ++   P  LA     + SL L  N+    + S   N+T L +L +  
Sbjct: 109 LTNLRELYLNEDNISDISP--LA-NLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTE 164

Query: 670 NHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFC 729
           +      P  ++  + L  L L+ N +    P  L +LT L +     N I    P+   
Sbjct: 165 SKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITPV--A 218

Query: 730 QLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSY 789
            +  L  L I +N I+  L    +   +  + +  N +          +   L +L++  
Sbjct: 219 NMTRLNSLKIGNNKIT-DLSPLANLSQLTWLEIGTNQIS---DINAVKDLTKLKMLNVGS 274

Query: 790 NHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIP 845
           N ++      ++ LSQL+ L L +N L  E    +  L  L  L LS N++    P
Sbjct: 275 NQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  121 bits (306), Expect = 5e-30
 Identities = 73/419 (17%), Positives = 147/419 (35%), Gaps = 75/419 (17%)

Query: 232 LRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVG 291
             +L      +     +     L+      +    + +         L  ++ L +    
Sbjct: 2   AATLATLPAPIN---QIFPDADLAEGIRAVLQKASVTD---VVTQEELESITKLVVAGEK 55

Query: 292 IRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSF 351
           +      +Q +    +L  L+L+ N  T+          +   L  LY+           
Sbjct: 56  VAS----IQGIEYLTNLEYLNLNGNQITDI-----SPLSNLVKLTNLYI----------- 95

Query: 352 LQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMT 411
                                  N  T    L  L +L+EL++ ++++    P  LAN+T
Sbjct: 96  ---------------------GTNKITDISALQNLTNLRELYLNEDNISDISP--LANLT 132

Query: 412 SLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENN 471
            +  L++ +N  +  +S  PL ++T +  L ++++  +    + P+ N + L       N
Sbjct: 133 KMYSLNLGANHNLSDLS--PLSNMTGLNYLTVTESKVK---DVTPIANLTDLYSLSLNYN 187

Query: 472 EINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPN 531
           +I  +I    SLT     L          + IT    + N   L  +++ + K+ +  P 
Sbjct: 188 QIE-DISPLASLT----SLHYFTAYV---NQITDITPVANMTRLNSLKIGNNKITDLSP- 238

Query: 532 WLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTV 591
             L N ++L  L +  + +       +    +L++L+V  N       L     LS+L  
Sbjct: 239 --LANLSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVGSNQISDISVLNN---LSQLNS 291

Query: 592 FNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIP-EHLAMGCVSLRSLALSNNNLE 649
             ++ N L        G +  L  L LS N +T   P   L      + S   +N  ++
Sbjct: 292 LFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASL----SKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  111 bits (279), Expect = 2e-26
 Identities = 59/273 (21%), Positives = 111/273 (40%), Gaps = 36/273 (13%)

Query: 97  FTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLT 156
                 L  L L +++I        +  L+ L+ +  LNL  N  N S LS L+ ++ L 
Sbjct: 106 LQNLTNLRELYLNEDNI------SDISPLANLTKMYSLNLGANH-NLSDLSPLSNMTGLN 158

Query: 157 SLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGN 216
            L ++ +++K   D+  + +L DL  L++  N I      +    L+ L +L  F    N
Sbjct: 159 YLTVTESKVK---DVTPIANLTDLYSLSLNYNQI------EDISPLASLTSLHYFTAYVN 209

Query: 217 LFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQAC 276
               + ++ +A ++ L SL + +N++    D+    +LS L  L++  N+I +     A 
Sbjct: 210 --QITDITPVANMTRLNSLKIGNNKIT---DLSPLANLSQLTWLEIGTNQISDIN---AV 261

Query: 277 SGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLK 336
             L KL  L++    I D    +  + +   LN+L L+ N                 +L 
Sbjct: 262 KDLTKLKMLNVGSNQISD----ISVLNNLSQLNSLFLNNNQLGNEDMEV---IGGLTNLT 314

Query: 337 ELYMDDARIALNTSFLQIIGESMPSIQYLSLSN 369
            L++    I            S+  +     +N
Sbjct: 315 TLFLSQNHITDIRPL-----ASLSKMDSADFAN 342

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  108 bits (272), Expect = 2e-25
 Identities = 47/219 (21%), Positives = 99/219 (45%), Gaps = 27/219 (12%)

Query: 102 QLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLS 161
            L  L + ++ +      + +  ++ L++L  L+L  N   +  +S LA L+SL      
Sbjct: 156 GLNYLTVTESKV------KDVTPIANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAY 207

Query: 162 ANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNS 221
            N++    DI  + ++  L  L IG N I           L+ L+ L   ++  N  ++ 
Sbjct: 208 VNQIT---DITPVANMTRLNSLKIGNNKITDL------SPLANLSQLTWLEIGTNQISD- 257

Query: 222 ILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRK 281
            ++++  L+ L+ L +  N++    D+   ++LS L  L ++ N++ N E  +   GL  
Sbjct: 258 -INAVKDLTKLKMLNVGSNQIS---DISVLNNLSQLNSLFLNNNQLGN-EDMEVIGGLTN 312

Query: 282 LSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTE 320
           L+ L L +  I D    ++ + S   +++ D +     +
Sbjct: 313 LTTLFLSQNHITD----IRPLASLSKMDSADFANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 94.5 bits (236), Expect = 6e-21
 Identities = 42/171 (24%), Positives = 70/171 (40%), Gaps = 20/171 (11%)

Query: 97  FTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLT 156
                 L       N I        +  ++ ++ L  L +  N   +  LS LA LS LT
Sbjct: 195 LASLTSLHYFTAYVNQI------TDITPVANMTRLNSLKIGNNKITD--LSPLANLSQLT 246

Query: 157 SLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGN 216
            L++  N++    DI  +  L  L+ LN+G N I           L+ L+ L    L+ N
Sbjct: 247 WLEIGTNQIS---DINAVKDLTKLKMLNVGSNQI------SDISVLNNLSQLNSLFLNNN 297

Query: 217 LFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEI 267
              N  +  +  L++L +L L  N +    D++   SLS ++  D +   I
Sbjct: 298 QLGNEDMEVIGGLTNLTTLFLSQNHIT---DIRPLASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.6 bits (140), Expect = 9e-09
 Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 9/96 (9%)

Query: 97  FTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLT 156
                +L+ L++  N I        +  L+ LS L  L L  N   N  +  +  L++LT
Sbjct: 261 VKDLTKLKMLNVGSNQI------SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314

Query: 157 SLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDK 192
           +L LS N +    DI+ L SL  ++  +    +I K
Sbjct: 315 TLFLSQNHIT---DIRPLASLSKMDSADFANQVIKK 347

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  147 bits (372), Expect = 1e-37
 Identities = 67/393 (17%), Positives = 133/393 (33%), Gaps = 30/393 (7%)

Query: 581 EIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRS 640
           EI    +R  +  ++ ++L  ++ S   +   ++ LDLS N L+      LA     L  
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLA-PFTKLEL 62

Query: 641 LALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKI 700
           L LS+N L         +L+ L  L L  N+      Q L    S++ L  +NN++S   
Sbjct: 63  LNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISRVS 115

Query: 701 PRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVC---I 757
                    +    +  N I     L+      +Q LD+  N I  ++           +
Sbjct: 116 CSRGQGKKNIY---LANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAASSDTL 171

Query: 758 EQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLE 817
           E ++L  N ++  +K         L  LDLS N L   +       + ++++ L +N L 
Sbjct: 172 EHLNLQYNFIY-DVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227

Query: 818 GEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMD 877
             +   L     L+  DL  N  H     C        +     ++       +     +
Sbjct: 228 -LIEKALRFSQNLEHFDLRGNGFH-----CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281

Query: 878 VDPKKQILESFDFTTKSITYTYQGRVPSL----LSGLDLSCNRLIGHIPPQIGNLTKIQT 933
                 +     +  + +   +  R+ +L     + L    +     +  +  N  + + 
Sbjct: 282 ECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSE-TERLECERENQARQRE 340

Query: 934 LNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 966
           ++         I       +   +L+     L 
Sbjct: 341 IDALKEQYRTVIDQVTLRKQAKITLEQKKKALD 373

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  123 bits (309), Expect = 2e-29
 Identities = 55/500 (11%), Positives = 128/500 (25%), Gaps = 66/500 (13%)

Query: 128 LSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGR 187
            +  K+  +  +    ++ S      ++  LDLS N L   I   +L     LE LN+  
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSS 67

Query: 188 NMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSID 247
           N++           L  L+ L+  DL+ N      +  L    S+ +L   +N +   + 
Sbjct: 68  NVL------YETLDLESLSTLRTLDLNNNY-----VQELLVGPSIETLHAANNNIS-RVS 115

Query: 248 VKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPS 307
                     + + ++ N+I                                   G    
Sbjct: 116 ---CSRGQGKKNIYLANNKITMLRD---------------------------LDEGCRSR 145

Query: 308 LNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSL 367
           +  LDL  N                 +L+ L +    I         +      ++ L L
Sbjct: 146 VQYLDLKLNEIDTVNFAEL--AASSDTLEHLNLQYNFI---YDVKGQV--VFAKLKTLDL 198

Query: 368 SNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSI 427
           S+    N    +         +  + + +N L   +   L    +L   D+  N      
Sbjct: 199 SS----NKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGT 253

Query: 428 SSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINA--EIIESHSLTT 485
                     ++ +          ++ +     +   +                   +  
Sbjct: 254 LRDFFSKNQRVQTVAKQTVKK---LTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIAL 310

Query: 486 PNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSL 545
              +   L       + +   +    +     +     +      + +         L  
Sbjct: 311 KRKEHALLSGQGSETERLECERENQAR--QREIDALKEQY-RTVIDQVTLRKQAKITLEQ 367

Query: 546 VNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALD-GSIP 604
              +L         +H +L                   +  S L +    +   +   + 
Sbjct: 368 KKKALDEQVSNGRRAHAELDGTLQQAV--GQIELQHATEEQSPLQLLRAIVKRYEEMYVE 425

Query: 605 SSFGNMNFLQFLDLSNNQLT 624
                 N ++  D+  ++ T
Sbjct: 426 QQSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  118 bits (297), Expect = 5e-28
 Identities = 66/449 (14%), Positives = 141/449 (31%), Gaps = 63/449 (14%)

Query: 402 SLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQ--IPISLEPLFN 459
           ++     N    +I  V+ +  +    +S      ++++L LS N         L P   
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSS-LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF-- 57

Query: 460 HSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVR 519
            ++L++ +  +N +  E ++  SL+     L++L L+              N        
Sbjct: 58  -TKLELLNLSSNVLY-ETLDLESLS----TLRTLDLN-------------NNY------- 91

Query: 520 LSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIP 579
           +  +                +  L   N+++    R+     +  + + ++ N       
Sbjct: 92  VQEL-----------LVGPSIETLHAANNNIS---RVSCSRGQGKKNIYLANNKITMLRD 137

Query: 580 LEIGDILSRLTVFNISMNALDG-SIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSL 638
           L+ G   SR+   ++ +N +D  +      + + L+ L+L  N +  ++   +      L
Sbjct: 138 LDEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV--VFAKL 193

Query: 639 RSLALSNNNLEGHMFSRNF-NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLS 697
           ++L LS+N L        F +   + W+ L  N  V  I ++L    +L+   L  N   
Sbjct: 194 KTLDLSSNKLA--FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

Query: 698 -GKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVC 756
            G +  +      ++ +             E C +    +           LP+ +    
Sbjct: 251 CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV--PTLGHYGAYCCE-DLPAPFADRL 307

Query: 757 IEQVHLSKNMLHGQLK-----EGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLIL 811
           I        +L GQ       E    N      +D         I            L  
Sbjct: 308 IALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQ 367

Query: 812 AHNNLEGEVPIQLCRLNQLQLLDLSNNNL 840
               L+ +V        +L          
Sbjct: 368 KKKALDEQVSNGRRAHAELDGTLQQAVGQ 396

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  114 bits (286), Expect = 1e-26
 Identities = 59/399 (14%), Positives = 117/399 (29%), Gaps = 27/399 (6%)

Query: 459 NHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYV 518
           N +R KI    ++ +   +            ++ L LS      I+    L     LE +
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAW---NVKELDLSGNPLSQIS-AADLAPFTKLELL 63

Query: 519 RLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHI 578
            LS   + E      LE+ + LR L L N+ +       +     +  L  + NN    +
Sbjct: 64  NLSSNVLYETLD---LESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-RV 114

Query: 579 PLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSL 638
               G     +    ++ N +        G  + +Q+LDL  N++       LA    +L
Sbjct: 115 SCSRGQGKKNI---YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 639 RSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSG 698
             L L  N +             L  L L  N     +       + +  + L NN L  
Sbjct: 172 EHLNLQYNFIY--DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV- 227

Query: 699 KIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISG-SLPSCYDFVCI 757
            I + L     L H  +  N        +F   +  ++  ++   +   +  +  +    
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVP 286

Query: 758 EQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGN----IPDRVDGLSQLSYLILAH 813
              H         L        + L   + +     G+    +    +  ++   +    
Sbjct: 287 TLGHYGAYCC-EDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALK 345

Query: 814 NNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTT 852
                 +     R      L+     L   + +      
Sbjct: 346 EQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHA 384

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  113 bits (285), Expect = 2e-26
 Identities = 65/489 (13%), Positives = 153/489 (31%), Gaps = 77/489 (15%)

Query: 355 IGESMPSIQYLSLSNSSVSNNSRTLDQG-LCPLVHLQELHMADNDLRGSLPWCLANMTSL 413
           I ++    +   +++    ++ +           +++EL ++ N L       LA  T L
Sbjct: 5   IKQNGNRYKIEKVTD----SSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 414 RILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEI 473
            +L++SSN L     +  L  L+++  L L++N+      ++ L     ++   A NN I
Sbjct: 61  ELLNLSSNVL---YETLDLESLSTLRTLDLNNNY------VQELLVGPSIETLHAANNNI 111

Query: 474 NAEIIESHSLTTPNFQ-LQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNW 532
           +        ++    Q  +++ L+              N+       ++ +       + 
Sbjct: 112 S-------RVSCSRGQGKKNIYLA-------------NNK-------ITML------RDL 138

Query: 533 LLENNTKLRQLSLVNDSLVG-PFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTV 591
                ++++ L L  + +    F     S   L  L++  N     +  ++    ++L  
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV--FAKLKT 195

Query: 592 FNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGH 651
            ++S N L   +   F +   + ++ L NN+L   I + L     +L    L  N     
Sbjct: 196 LDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALR-FSQNLEHFDLRGNGFH-C 251

Query: 652 MFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLR 711
              R+F   N     +          Q+  +C+                  +   L  L+
Sbjct: 252 GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALK 311

Query: 712 HIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQL 771
                               +   +L    +          +     ++   K      +
Sbjct: 312 -------------------RKEHALLSGQGSETERLECERENQARQREIDALKEQYR-TV 351

Query: 772 KEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQ 831
            +         + L+     L+  + +     ++L   +        E+       + LQ
Sbjct: 352 IDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQI-ELQHATEEQSPLQ 410

Query: 832 LLDLSNNNL 840
           LL       
Sbjct: 411 LLRAIVKRY 419

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  109 bits (275), Expect = 3e-25
 Identities = 68/477 (14%), Positives = 146/477 (30%), Gaps = 42/477 (8%)

Query: 92  LNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLAR 151
             ASL      ++ LDL  N ++     +    L+  + L++LNL  N+        L  
Sbjct: 25  ALASLRQSAWNVKELDLSGNPLSQISAAD----LAPFTKLELLNLSSNVLYE--TLDLES 78

Query: 152 LSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVF 211
           LS+L +LDL+ N       ++EL     +E L+   N I +          SR    K  
Sbjct: 79  LSTLRTLDLNNNY------VQELLVGPSIETLHAANNNISRV-------SCSRGQGKKNI 125

Query: 212 DLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFE 271
            L+ N             S ++ L L  N ++     +   S   LE L++ YN I + +
Sbjct: 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185

Query: 272 VPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPH 331
                    KL  L L    +   + +     S   +  + L  N          +    
Sbjct: 186 ---GQVVFAKLKTLDLSSNKL---AFMGPEFQSAAGVTWISLRNNKL----VLIEKALRF 235

Query: 332 FKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQE 391
            ++L+   +       +   L+        +Q ++             +  +  L H   
Sbjct: 236 SQNLEHFDLRGNG--FHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGA 293

Query: 392 LHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIP 451
               D     +            +L    ++           +     ++      ++  
Sbjct: 294 YCCEDLPAPFADRLIALKRKEHALLSGQGSET--ERLECERENQARQREIDALKEQYRT- 350

Query: 452 ISLEPLFNHSRLKIFDAENNEIN-------AEIIESHSLTTPNFQLQSLLLSSGYRDGIT 504
           +  +           + +   ++           E             L  ++  +  + 
Sbjct: 351 VIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQ 410

Query: 505 FPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENN-TKLRQLSLVNDSLVGPFRLPIHS 560
             + +  +++  YV    ++ N      + ++  T+L + +     L G   L + S
Sbjct: 411 LLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALAS 467

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  100 bits (251), Expect = 3e-22
 Identities = 57/457 (12%), Positives = 138/457 (30%), Gaps = 43/457 (9%)

Query: 251 FDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNT 310
             + +  +   ++ + +              +  L L    +   S     +  F  L  
Sbjct: 6   KQNGNRYKIEKVTDSSLKQAL-ASLRQSAWNVKELDLSGNPLSQISA--ADLAPFTKLEL 62

Query: 311 LDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNS 370
           L+LS N   E     T       +L+ L +++  +              PSI+ L  +N 
Sbjct: 63  LNLSSNVLYE-----TLDLESLSTLRTLDLNNNYV---QEL-----LVGPSIETLHAAN- 108

Query: 371 SVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSS 430
              NN   +          + +++A+N +           + ++ LD+  N++     + 
Sbjct: 109 ---NNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163

Query: 431 PLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQL 490
                 ++E L L  N       ++     ++LK  D  +N++     E  S       +
Sbjct: 164 LAASSDTLEHLNLQYNFIY---DVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAA----GV 216

Query: 491 QSLLLSSGYRDGIT-FPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDS 549
             + L +   + +    K L    +LE+  L     +          N +++ ++    +
Sbjct: 217 TWISLRN---NKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA--KQT 271

Query: 550 LVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGS----IPS 605
           +               L        +  +P    D L  L     ++ +  GS    +  
Sbjct: 272 VKKLTGQNEEECTVPTLGHYGAYCCE-DLPAPFADRLIALKRKEHALLSGQGSETERLEC 330

Query: 606 SFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWL 665
              N    + +D    Q    + + + +   +  +L      L+  + +       L   
Sbjct: 331 ERENQARQREIDALKEQYR-TVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGT 389

Query: 666 QLEGNH--FVGEIPQSLSKCSSLQGLFLSNNSLSGKI 700
             +      +    +  S    L+ +      +  + 
Sbjct: 390 LQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQ 426

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 82.2 bits (203), Expect = 2e-16
 Identities = 38/219 (17%), Positives = 74/219 (33%), Gaps = 24/219 (10%)

Query: 776 FFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDL 835
             N     I  ++ + L   +         +  L L+ N L       L    +L+LL+L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 836 SNNNLHGHIPSCFDNTTLHE---RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTT 892
           S+N L+         +TL       N    L    +                +E+     
Sbjct: 66  SSNVLY-ETLDLESLSTLRTLDLNNNYVQELLVGPS----------------IETLHAAN 108

Query: 893 KSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAG-PIPSTFSN 951
            +I+     R     + + L+ N++        G  +++Q L+L  N +         ++
Sbjct: 109 NNISRVSCSRGQGKKN-IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167

Query: 952 LRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLS 990
              +E L+L YN +   +    V    L    ++ N L+
Sbjct: 168 SDTLEHLNLQYNFIY-DVK-GQVVFAKLKTLDLSSNKLA 204

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.0 bits (122), Expect = 1e-06
 Identities = 15/67 (22%), Positives = 29/67 (43%)

Query: 925 IGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSV 984
             N  + +   ++ ++L   + S   +  N++ LDLS N LS      L     L + ++
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 985 AYNNLSG 991
           + N L  
Sbjct: 66  SSNVLYE 72

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  131 bits (332), Expect = 2e-32
 Identities = 70/325 (21%), Positives = 134/325 (41%), Gaps = 27/325 (8%)

Query: 129 SNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRN 188
           +  ++L+L  N          A    L  L+L+ N +  +++    ++L +L  L +  N
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSN 90

Query: 189 MIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDV 248
            +            + L+NL   D+S N     +      L +L+SL + DN L   I  
Sbjct: 91  RLKLI----PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISH 145

Query: 249 KEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRD-GSKLLQSMGSFPS 307
           + F  L++LE+L +    + +    +A S L  L  L L  + I        + +     
Sbjct: 146 RAFSGLNSLEQLTLEKCNLTSIP-TEALSHLHGLIVLRLRHLNINAIRDYSFKRL---YR 201

Query: 308 LNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIAL--NTSFLQIIGESMPSIQYL 365
           L  L++S+  + +T+T       +  +L  L +    +      +        +  +++L
Sbjct: 202 LKVLEISHWPYLDTMTP---NCLYGLNLTSLSITHCNLTAVPYLAV-----RHLVYLRFL 253

Query: 366 SLSNSSVSNNSRTLDQG-LCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLI 424
           +LS     N   T++   L  L+ LQE+ +    L    P+    +  LR+L+VS NQ +
Sbjct: 254 NLSY----NPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ-L 308

Query: 425 GSISSSPLIHLTSIEDLILSDNHFQ 449
            ++  S    + ++E LIL  N   
Sbjct: 309 TTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  129 bits (325), Expect = 2e-31
 Identities = 70/292 (23%), Positives = 127/292 (43%), Gaps = 12/292 (4%)

Query: 555 RLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQ 614
            +P     + RLLD+ KN  +  +  +       L    ++ N +    P +F N+  L+
Sbjct: 25  AVPEGIPTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLR 83

Query: 615 FLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNL---EGHMFSRNFNLTNLIWLQLEGNH 671
            L L +N+L   IP  +  G  +L  L +S N +     +MF    +L NL  L++  N 
Sbjct: 84  TLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQ---DLYNLKSLEVGDND 139

Query: 672 FVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQL 731
            V    ++ S  +SL+ L L   +L+      L +L  L  + +   +I       F +L
Sbjct: 140 LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRL 199

Query: 732 RILQILDISDNNISGSL-PSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYN 790
             L++L+IS      ++ P+C   + +  + ++   L   +      + + L  L+LSYN
Sbjct: 200 YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYN 258

Query: 791 HLNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH 841
            ++  I   +   L +L  + L    L    P     LN L++L++S N L 
Sbjct: 259 PIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  125 bits (316), Expect = 2e-30
 Identities = 71/330 (21%), Positives = 127/330 (38%), Gaps = 33/330 (10%)

Query: 75  RVVVLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLER--LSRLSNLK 132
              +LDL +        LN   F  F  LE L+L +N +        +E    + L NL+
Sbjct: 33  ETRLLDLGKNRIKT---LNQDEFASFPHLEELELNENIV------SAVEPGAFNNLFNLR 83

Query: 133 MLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDK 192
            L L  N      L     LS+LT LD+S N++   +       L +L+ L +G N +  
Sbjct: 84  TLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVY 142

Query: 193 FVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFD 252
                  +  S LN+L+   L      +    +L+ L  L  L L    +  +I    F 
Sbjct: 143 I----SHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFK 197

Query: 253 SLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRD-GSKLLQSMGSFPSLNTL 311
            L  L+ L++S+    +   P    GL  L+ L +    +       ++ +     L  L
Sbjct: 198 RLYRLKVLEISHWPYLDTMTPNCLYGLN-LTSLSITHCNLTAVPYLAVRHL---VYLRFL 253

Query: 312 DLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSS 371
           +LSYN  +    +          L+E+ +   ++             +  ++ L++S   
Sbjct: 254 NLSYNPISTIEGSM---LHELLRLQEIQLVGGQL---AVVEPYAFRGLNYLRVLNVSG-- 305

Query: 372 VSNNSRTLDQGLC-PLVHLQELHMADNDLR 400
             N   TL++ +   + +L+ L +  N L 
Sbjct: 306 --NQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  122 bits (309), Expect = 1e-29
 Identities = 72/384 (18%), Positives = 126/384 (32%), Gaps = 75/384 (19%)

Query: 616 LDLSNNQLTGEIPEHLAMGCVSLRSLALSNNN---LEGHMFSRNFNLTNLIWLQLEGNHF 672
           +     +    +PE +       R L L  N    L    F+   +  +L  L+L  N  
Sbjct: 16  VLCHRKRFV-AVPEGIP---TETRLLDLGKNRIKTLNQDEFA---SFPHLEELELNENIV 68

Query: 673 VGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLR 732
               P + +   +L+ L L +N L          L+ L  + + +N I   +   F  L 
Sbjct: 69  SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY 128

Query: 733 ILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHL 792
            L+ L++ DN++                          +    F    +L  L L   +L
Sbjct: 129 NLKSLEVGDNDLV------------------------YISHRAFSGLNSLEQLTLEKCNL 164

Query: 793 NGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHI-PSCFDN 850
             +IP      L  L  L L H N+         RL +L++L++S+      + P+C   
Sbjct: 165 T-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG 223

Query: 851 TTLHE---RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLL 907
             L      + N +++                       +                   L
Sbjct: 224 LNLTSLSITHCNLTAVPY--------------------LAVRHLVY-------------L 250

Query: 908 SGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 966
             L+LS N  I  I   +   L ++Q + L    LA   P  F  L  +  L++S N+L+
Sbjct: 251 RFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309

Query: 967 WKIPYQLVELNTLAVFSVAYNNLS 990
                    +  L    +  N L+
Sbjct: 310 TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  122 bits (308), Expect = 2e-29
 Identities = 56/286 (19%), Positives = 108/286 (37%), Gaps = 14/286 (4%)

Query: 562 KQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNN 621
             L  L++++N     +     + L  L    +  N L       F  ++ L  LD+S N
Sbjct: 56  PHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN 114

Query: 622 QLTGEIPEHLAMGCVSLRSLALSNNNL---EGHMFSRNFNLTNLIWLQLEGNHFVGEIPQ 678
           ++   + +++     +L+SL + +N+L       FS    L +L  L LE  +      +
Sbjct: 115 KIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS---GLNSLEQLTLEKCNLTSIPTE 170

Query: 679 SLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILD 738
           +LS    L  L L + +++         L  L+ + +        +         L  L 
Sbjct: 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLS 230

Query: 739 ISDNNISGSLPS--CYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNI 796
           I+  N++ ++P       V +  ++LS N +   ++       L L  + L    L   +
Sbjct: 231 ITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLA-VV 287

Query: 797 PDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH 841
                 GL+ L  L ++ N L          +  L+ L L +N L 
Sbjct: 288 EPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  107 bits (268), Expect = 3e-24
 Identities = 60/329 (18%), Positives = 106/329 (32%), Gaps = 68/329 (20%)

Query: 675 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRIL 734
            +P+ +   +  + L L  N +         +   L  + + +N +    P  F  L  L
Sbjct: 25  AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNL 82

Query: 735 QILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNG 794
           + L +  N +                          +  G F     L  LD+S N +  
Sbjct: 83  RTLGLRSNRLK------------------------LIPLGVFTGLSNLTKLDISENKIV- 117

Query: 795 NIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPS-CFDN-- 850
            + D +   L  L  L +  N+L          LN L+ L L   NL   IP+    +  
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLH 176

Query: 851 --TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLS 908
               L  R+ N ++++                      SF    +             L 
Sbjct: 177 GLIVLRLRHLNINAIRD--------------------YSFKRLYR-------------LK 203

Query: 909 GLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWK 968
            L++S    +  + P       + +L+++H NL         +L  +  L+LSYN +S  
Sbjct: 204 VLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTI 263

Query: 969 IPYQLVELNTLAVFSVAYNNLSGKIPERA 997
               L EL  L    +    L+  +   A
Sbjct: 264 EGSMLHELLRLQEIQLVGGQLA-VVEPYA 291

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  102 bits (256), Expect = 9e-23
 Identities = 73/395 (18%), Positives = 137/395 (34%), Gaps = 95/395 (24%)

Query: 230 SSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLR 289
           +  R L L  NR++ +++  EF S  +LEEL+++ N +   E P A + L          
Sbjct: 32  TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVE-PGAFNNL---------- 79

Query: 290 VGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNT 349
                            +L TL L  N            F    +L +L + + +I    
Sbjct: 80  ----------------FNLRTLGLRSNRLKLI---PLGVFTGLSNLTKLDISENKI---V 117

Query: 350 SFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQG-LCPLVHLQELHMADNDLRGSLPWCLA 408
             L  + + + +++ L + +    N+   +       L  L++L +   +L       L+
Sbjct: 118 ILLDYMFQDLYNLKSLEVGD----NDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALS 173

Query: 409 NMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDA 468
           ++  L +L +     I +I       L  ++ L +S   +   ++         L     
Sbjct: 174 HLHGLIVLRLRHLN-INAIRDYSFKRLYRLKVLEISHWPYLDTMT-PNCLYGLNLTSLSI 231

Query: 469 ENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEE 528
            +  + A  +   ++      L+ L LS             YN        +S I     
Sbjct: 232 THCNLTA--VPYLAVR-HLVYLRFLNLS-------------YNP-------ISTI----- 263

Query: 529 FPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSR 588
               +L    +L+++ LV                  +L  V    F+G         L+ 
Sbjct: 264 -EGSMLHELLRLQEIQLVGG----------------QLAVVEPYAFRG---------LNY 297

Query: 589 LTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQL 623
           L V N+S N L     S F ++  L+ L L +N L
Sbjct: 298 LRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  129 bits (326), Expect = 3e-32
 Identities = 64/359 (17%), Positives = 129/359 (35%), Gaps = 41/359 (11%)

Query: 127 RLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIG 186
            L+N K++    +       + L     +  L+L+  +++  ID         ++KL +G
Sbjct: 43  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMG 101

Query: 187 RNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSI 246
            N I        P     +  L V  L  N  ++           L +L + +N LE  I
Sbjct: 102 FNAIRYL----PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RI 156

Query: 247 DVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQ------ 300
           +   F + ++L+ L +S N + + ++    S +  L + ++    +   +  +       
Sbjct: 157 EDDTFQATTSLQNLQLSSNRLTHVDL----SLIPSLFHANVSYNLLSTLAIPIAVEELDA 212

Query: 301 --------SMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFL 352
                          L  L L +NN T+T         ++  L E+ +    +      +
Sbjct: 213 SHNSINVVRGPVNVELTILKLQHNNLTDT-----AWLLNYPGLVEVDLSYNEL---EKIM 264

Query: 353 QIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTS 412
                 M  ++ L +SN    N    L+    P+  L+ L ++ N L   +         
Sbjct: 265 YHPFVKMQRLERLYISN----NRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDR 319

Query: 413 LRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENN 471
           L  L +  N     I +  L    ++++L LS N +          N +R  + DA+ +
Sbjct: 320 LENLYLDHNS----IVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  127 bits (322), Expect = 8e-32
 Identities = 64/338 (18%), Positives = 130/338 (38%), Gaps = 25/338 (7%)

Query: 534 LENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFN 593
           L+ +     + +   +    F     +    +++    +  +  +P  + D   ++ + N
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLN 75

Query: 594 ISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLE---G 650
           ++   ++     +F   + +Q L +  N +   +P H+      L  L L  N+L     
Sbjct: 76  LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPR 134

Query: 651 HMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVL 710
            +F    N   L  L +  N+       +    +SLQ L LS+N L+  +   L  +  L
Sbjct: 135 GIFH---NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSL 188

Query: 711 RHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQ 770
            H  +  N +             ++ LD S N+I+  +      V +  + L  N L   
Sbjct: 189 FHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRG-PVNVELTILKLQHNNLT-- 239

Query: 771 LKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQL 830
                  N   L+ +DLSYN L   +      + +L  L +++N L   + +    +  L
Sbjct: 240 -DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTL 297

Query: 831 QLLDLSNNNLHGHIPSCFDNTTLHE---RYNNGSSLQP 865
           ++LDLS+N+L     +      L      +N+  +L+ 
Sbjct: 298 KVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKL 335

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  122 bits (309), Expect = 4e-30
 Identities = 79/382 (20%), Positives = 129/382 (33%), Gaps = 62/382 (16%)

Query: 593 NISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLE--- 649
           +I M   D         +N  + +   N+ +  ++P  L      +  L L++  +E   
Sbjct: 27  HIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEID 85

Query: 650 GHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTV 709
            + F+       +  L +  N      P        L  L L  N LS        N   
Sbjct: 86  TYAFA---YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK 142

Query: 710 LRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHG 769
           L  + M  N++E      F     LQ L +S N ++  +        +   ++S N+L  
Sbjct: 143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL-SLIPSLFHANVSYNLLS- 199

Query: 770 QLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQ 829
                T    + +  LD S+N +N  +   V    +L+ L L HNNL  +    L     
Sbjct: 200 -----TLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLT-DTA-WLLNYPG 249

Query: 830 LQLLDLSNNNLHGHIPSCFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQIL 885
           L  +DLS N L   +   F        L+   N                          L
Sbjct: 250 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-------------------------L 284

Query: 886 ESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPI 945
            + +   + I           L  LDLS N  + H+        +++ L L HN++    
Sbjct: 285 VALNLYGQPIPT---------LKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSIVTLK 334

Query: 946 PSTFSNLRNIESLDLSYNKLSW 967
            ST   L+N   L LS+N    
Sbjct: 335 LSTHHTLKN---LTLSHNDWDC 353

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  120 bits (303), Expect = 3e-29
 Identities = 76/365 (20%), Positives = 143/365 (39%), Gaps = 43/365 (11%)

Query: 92  LNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLAR 151
           L A+L   F+Q+E L+L D  I            +    ++ L +  N            
Sbjct: 60  LPAALLDSFRQVELLNLNDLQIEEIDTYA----FAYAHTIQKLYMGFNAIRYLPPHVFQN 115

Query: 152 LSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVF 211
           +  LT L L  N L  S+      +   L  L++  N +++              +L+  
Sbjct: 116 VPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERI----EDDTFQATTSLQNL 170

Query: 212 DLSGNLFNNSILS-SLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNF 270
            LS    +N +    L+ + SL    +  N L              +EELD S+N I+  
Sbjct: 171 QLS----SNRLTHVDLSLIPSLFHANVSYNLLS------TLAIPIAVEELDASHNSINVV 220

Query: 271 EVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFP 330
             P       +L+ L L    + D       + ++P L  +DLSYN   + +      F 
Sbjct: 221 RGPV----NVELTILKLQHNNLTD----TAWLLNYPGLVEVDLSYNELEKIMYHP---FV 269

Query: 331 HFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQ 390
             + L+ LY+ + R+      L + G+ +P+++ L LS+    N+   +++       L+
Sbjct: 270 KMQRLERLYISNNRL----VALNLYGQPIPTLKVLDLSH----NHLLHVERNQPQFDRLE 321

Query: 391 ELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQI 450
            L++  N +  +L   L+   +L+ L +S N    +   +   ++     +  +D H +I
Sbjct: 322 NLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARP-AVDDADQHCKI 377

Query: 451 PISLE 455
              LE
Sbjct: 378 DYQLE 382

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  118 bits (297), Expect = 2e-28
 Identities = 62/350 (17%), Positives = 116/350 (33%), Gaps = 37/350 (10%)

Query: 125 LSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLN 184
           L        +++     +         L++   +    + ++  +    LDS R +E LN
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLN 75

Query: 185 IGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEG 244
           +    I++          +  + ++   +  N            +  L  L+L  N L  
Sbjct: 76  LNDLQIEEI----DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS- 130

Query: 245 SIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGS 304
           S+    F +   L  L MS N ++  E          L  L L    +         +  
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQNLQLSSNRLTHVD-----LSL 184

Query: 305 FPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQY 364
            PSL   ++SYN  +              +++EL      I        + G     +  
Sbjct: 185 IPSLFHANVSYNLLST--------LAIPIAVEELDASHNSIN------VVRGPVNVELTI 230

Query: 365 LSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLI 424
           L L +    NN       L     L E+ ++ N+L   +      M  L  L +S+N+L 
Sbjct: 231 LKLQH----NNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL- 284

Query: 425 GSISSSPLIHLTSIEDLILSDNHFQIPISLEP-LFNHSRLKIFDAENNEI 473
               +     + +++ L LS NH      +E       RL+    ++N I
Sbjct: 285 -VALNLYGQPIPTLKVLDLSHNHLL---HVERNQPQFDRLENLYLDHNSI 330

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  117 bits (294), Expect = 3e-28
 Identities = 72/357 (20%), Positives = 141/357 (39%), Gaps = 26/357 (7%)

Query: 487 NFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLV 546
           +     + +    +D     + +   +  + V   +  M  + P  LL++  ++  L+L 
Sbjct: 20  DCVFYDVHIDMQTQDVYFGFEDITLNN-QKIVTFKNSTM-RKLPAALLDSFRQVELLNLN 77

Query: 547 NDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSS 606
           +  +             ++ L +  N  + ++P  +   +  LTV  +  N L       
Sbjct: 78  DLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGI 136

Query: 607 FGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQ 666
           F N   L  L +SNN L   I +       SL++L LS+N L     S    + +L    
Sbjct: 137 FHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLS---LIPSLFHAN 192

Query: 667 LEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPL 726
           +  N        +L+   +++ L  S+NS++         LT+L+   +  N++      
Sbjct: 193 VSYNLL-----STLAIPIAVEELDASHNSINVVRGPVNVELTILK---LQHNNLT-DTA- 242

Query: 727 EFCQLRILQILDISDNNISGSLP--SCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMI 784
                  L  +D+S N +   +          +E++++S N L             TL +
Sbjct: 243 WLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVAL--NLYGQPIPTLKV 299

Query: 785 LDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH 841
           LDLS+NHL  ++        +L  L L HN++     ++L   + L+ L LS+N+  
Sbjct: 300 LDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  110 bits (276), Expect = 9e-26
 Identities = 61/365 (16%), Positives = 116/365 (31%), Gaps = 70/365 (19%)

Query: 637  SLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSL 696
                + +     + +    +  L N   +  + +         L     ++ L L++  +
Sbjct: 22   VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI 81

Query: 697  SGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVC 756
                         ++ + M  N I    P  F  + +L +L +  N++S           
Sbjct: 82   EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS----------- 130

Query: 757  IEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNN 815
                          L  G F N   L  L +S N+L   I D      + L  L L+ N 
Sbjct: 131  -------------SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNR 176

Query: 816  LEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGG 875
            L     + L  +  L   ++S N L   +        L   +N+ + ++           
Sbjct: 177  LTH---VDLSLIPSLFHANVSYNLLS-TLAIPIAVEELDASHNSINVVRG---------- 222

Query: 876  MDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLN 935
                                       V   L+ L L  N L       + N   +  ++
Sbjct: 223  --------------------------PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVD 254

Query: 936  LSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPE 995
            LS+N L   +   F  ++ +E L +S N+L   +      + TL V  +++N+L   +  
Sbjct: 255  LSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVER 312

Query: 996  RAAQF 1000
               QF
Sbjct: 313  NQPQF 317

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  108 bits (271), Expect = 4e-25
 Identities = 63/391 (16%), Positives = 141/391 (36%), Gaps = 37/391 (9%)

Query: 365 LSLSNSSVSNNSRTLDQGL--CPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQ 422
               +  +   ++ +  G     L + + +   ++ +R      L +   + +L+++  Q
Sbjct: 21  CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ 80

Query: 423 LIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHS 482
            I  I +    +  +I+ L +  N  +  +      N   L +   E N++    +    
Sbjct: 81  -IEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDL--SSLPRGI 136

Query: 483 LTTPNFQLQSLLLSSGYRDGITF--PKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKL 540
                 +L +L +S    + +             L+ ++LS  ++       L+ +   L
Sbjct: 137 F-HNTPKLTTLSMS---NNNLERIEDDTFQATTSLQNLQLSSNRL-THVDLSLIPS---L 188

Query: 541 RQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALD 600
              ++  + L       +     +  LD S N+    +    G +   LT+  +  N L 
Sbjct: 189 FHANVSYNLLST-----LAIPIAVEELDASHNSIN-VVR---GPVNVELTILKLQHNNL- 238

Query: 601 GSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNF-NL 659
            +  +   N   L  +DLS N+L  +I  H  +    L  L +SNN L     +     +
Sbjct: 239 -TDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV--ALNLYGQPI 294

Query: 660 TNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNH 719
             L  L L  NH +  + ++  +   L+ L+L +NS+   +   L     L+++ +  N 
Sbjct: 295 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHND 350

Query: 720 IEGPIPLEFCQLRILQILDISDNNISGSLPS 750
            +          R +    + D +    +  
Sbjct: 351 WDCNSLRAL--FRNVARPAVDDADQHCKIDY 379

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 99.7 bits (249), Expect = 2e-22
 Identities = 67/311 (21%), Positives = 116/311 (37%), Gaps = 46/311 (14%)

Query: 91  YLNASLFTPFQQLESLDLRDNDIAGCVENEGLER--LSRLSNLKMLNLVGNLFNNSILSS 148
           YL   +F     L  L L  ND+        L R        L  L++  N        +
Sbjct: 107 YLPPHVFQNVPLLTVLVLERNDL------SSLPRGIFHNTPKLTTLSMSNNNLERIEDDT 160

Query: 149 LARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNL 208
               +SL +L LS+NRL   +D   L  +  L   N+  N++           L+    +
Sbjct: 161 FQATTSLQNLQLSSNRLT-HVD---LSLIPSLFHANVSYNLL---------STLAIPIAV 207

Query: 209 KVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEID 268
           +  D S N    +++        L  L L  N L    D     +   L E+D+SYNE++
Sbjct: 208 EELDASHNSI--NVVRGPV-NVELTILKLQHNNL---TDTAWLLNYPGLVEVDLSYNELE 261

Query: 269 NFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQG 328
                     +++L  L++    +   +   Q +   P+L  LDLS+N+         + 
Sbjct: 262 KIM-YHPFVKMQRLERLYISNNRLVALNLYGQPI---PTLKVLDLSHNHL----LHVERN 313

Query: 329 FPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVH 388
            P F  L+ LY+D   I        +   +  +++ L+LS++    NS           +
Sbjct: 314 QPQFDRLENLYLDHNSIV------TLKLSTHHTLKNLTLSHNDWDCNSLRA-----LFRN 362

Query: 389 LQELHMADNDL 399
           +    + D D 
Sbjct: 363 VARPAVDDADQ 373

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  129 bits (326), Expect = 3e-31
 Identities = 83/604 (13%), Positives = 179/604 (29%), Gaps = 61/604 (10%)

Query: 97  FTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLT 156
                  + +  +++ +           L     +++LNL           + A   ++ 
Sbjct: 47  DITLNNQKIVTFKNSTMRKLPAAL----LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQ 102

Query: 157 SLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGN 216
            L +  N ++  +      ++  L  L + RN +                 L    +S N
Sbjct: 103 KLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSL----PRGIFHNTPKLTTLSMSNN 157

Query: 217 LFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQAC 276
                   +    +SL++L L  NRL   +D      + +L   ++SYN +         
Sbjct: 158 NLERIEDDTFQATTSLQNLQLSSNRLT-HVD---LSLIPSLFHANVSYNLLSTL------ 207

Query: 277 SGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLK 336
           +    +  L      I               L  L L +NN T+     T    ++  L 
Sbjct: 208 AIPIAVEELDASHNSINVVRG-----PVNVELTILKLQHNNLTD-----TAWLLNYPGLV 257

Query: 337 ELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMAD 396
           E+ +    +      +      M  ++ L +SN    N    L+    P+  L+ L ++ 
Sbjct: 258 EVDLSYNEL---EKIMYHPFVKMQRLERLYISN----NRLVALNLYGQPIPTLKVLDLSH 310

Query: 397 NDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEP 456
           N L   +         L  L +  N     I +  L    ++++L LS N +        
Sbjct: 311 NHLL-HVERNQPQFDRLENLYLDHNS----IVTLKLSTHHTLKNLTLSHNDWDCNSLRAL 365

Query: 457 LFNHSRLKIFDAENNEINAEIIE------SHSLTTPNFQLQSLLLSSGYRDGITFPKFLY 510
             N +R  + DA+ +      +E             +  LQ + L+S             
Sbjct: 366 FRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCS 425

Query: 511 NQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVS 570
               +  V+     + ++    L  N     +++ +   +       I   + L+ L   
Sbjct: 426 ATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAE 485

Query: 571 KNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEH 630
            +              + L  + +  + L  S  +       L+       + T      
Sbjct: 486 ID--------------TNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTE 531

Query: 631 LAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLF 690
                     L   N  LE  + ++      L          V ++    ++    + + 
Sbjct: 532 ADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDTRRVS 591

Query: 691 LSNN 694
             ++
Sbjct: 592 HHHH 595

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  121 bits (306), Expect = 1e-28
 Identities = 101/574 (17%), Positives = 198/574 (34%), Gaps = 54/574 (9%)

Query: 92  LNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLAR 151
           L A+L   F+Q+E L+L D  I            +    ++ L +  N            
Sbjct: 66  LPAALLDSFRQVELLNLNDLQIEEIDTYA----FAYAHTIQKLYMGFNAIRYLPPHVFQN 121

Query: 152 LSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVF 211
           +  LT L L  N L  S+      +   L  L++  N +++              +L+  
Sbjct: 122 VPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERI----EDDTFQATTSLQNL 176

Query: 212 DLSGNLFNNSILS-SLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNF 270
            LS    +N +    L+ + SL    +  N L              +EELD S+N I+  
Sbjct: 177 QLS----SNRLTHVDLSLIPSLFHANVSYNLL------STLAIPIAVEELDASHNSINVV 226

Query: 271 EVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFP 330
             P       +L+ L L    + D       + ++P L  +DLSYN   + +      F 
Sbjct: 227 RGPV----NVELTILKLQHNNLTD----TAWLLNYPGLVEVDLSYNELEKIMYHP---FV 275

Query: 331 HFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQ 390
             + L+ LY+ + R+      L + G+ +P+++ L LS+    N+   +++       L+
Sbjct: 276 KMQRLERLYISNNRL----VALNLYGQPIPTLKVLDLSH----NHLLHVERNQPQFDRLE 327

Query: 391 ELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQI 450
            L++  N +  +L   L+   +L+ L +S N    +   +   ++     +  +D H +I
Sbjct: 328 NLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARP-AVDDADQHCKI 383

Query: 451 PISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLY 510
              LE              +      +++  +LT+   ++Q         D I   + L 
Sbjct: 384 DYQLEHGLCCKES------DKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLS 437

Query: 511 NQ-HDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDV 569
           +       V L   +  E   N L     +L    +  + L+    L       LR   +
Sbjct: 438 HYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQ--GLHAEIDTNLRRYRL 495

Query: 570 SKNNFQGHIPLEIGDILSRLTVFNISMNALD-GSIPSSFGNMNFLQFLDLSNNQLTGEIP 628
            K+         +  + + L                 +       + L+  N  L  ++ 
Sbjct: 496 PKDGL-ARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLD 554

Query: 629 EHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNL 662
              A      +  +L    ++     +N N    
Sbjct: 555 NKRAKQAELRQETSLKRQKVKQLEAKKNRNPDTR 588

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  120 bits (302), Expect = 3e-28
 Identities = 79/382 (20%), Positives = 130/382 (34%), Gaps = 62/382 (16%)

Query: 593 NISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNN---NLE 649
           +I M   D         +N  + +   N+ +  ++P  L      +  L L++     ++
Sbjct: 33  HIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEID 91

Query: 650 GHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTV 709
            + F+       +  L +  N      P        L  L L  N LS        N   
Sbjct: 92  TYAFA---YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK 148

Query: 710 LRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHG 769
           L  + M  N++E      F     LQ L +S N ++  +        +   ++S N+L  
Sbjct: 149 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL-SLIPSLFHANVSYNLLS- 205

Query: 770 QLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQ 829
                T    + +  LD S+N +N  +   V    +L+ L L HNNL  +    L     
Sbjct: 206 -----TLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLT-DTA-WLLNYPG 255

Query: 830 LQLLDLSNNNLHGHIPSCFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQIL 885
           L  +DLS N L   +   F        L+   N                          L
Sbjct: 256 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-------------------------L 290

Query: 886 ESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPI 945
            + +   + I           L  LDLS N L+ H+        +++ L L HN++    
Sbjct: 291 VALNLYGQPIPT---------LKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK 340

Query: 946 PSTFSNLRNIESLDLSYNKLSW 967
            ST   L+N   L LS+N    
Sbjct: 341 LSTHHTLKN---LTLSHNDWDC 359

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  108 bits (270), Expect = 3e-24
 Identities = 64/392 (16%), Positives = 121/392 (30%), Gaps = 78/392 (19%)

Query: 618  LSNNQLTGEIPEHLAMGCV--------SLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEG 669
            +   Q     P      C+            + +     + +    +  L N   +  + 
Sbjct: 1    VGGQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKN 60

Query: 670  NHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFC 729
            +         L     ++ L L++  +             ++ + M  N I    P  F 
Sbjct: 61   STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 120

Query: 730  QLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSY 789
             + +L +L +  N++S                         L  G F N   L  L +S 
Sbjct: 121  NVPLLTVLVLERNDLS------------------------SLPRGIFHNTPKLTTLSMSN 156

Query: 790  NHLNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCF 848
            N+L   I D      + L  L L+ N L     + L  +  L   ++S N L   +    
Sbjct: 157  NNLE-RIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLLS-TLAIPI 211

Query: 849  DNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLS 908
                L   +N+ + ++                                      V   L+
Sbjct: 212  AVEELDASHNSINVVRG------------------------------------PVNVELT 235

Query: 909  GLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWK 968
             L L  N L       + N   +  ++LS+N L   +   F  ++ +E L +S N+L   
Sbjct: 236  ILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-A 292

Query: 969  IPYQLVELNTLAVFSVAYNNLSGKIPERAAQF 1000
            +      + TL V  +++N+L   +     QF
Sbjct: 293  LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF 323

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  104 bits (260), Expect = 5e-23
 Identities = 87/549 (15%), Positives = 184/549 (33%), Gaps = 56/549 (10%)

Query: 313 LSYNNFTET--VTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNS 370
             YN                +     ++++D     +   F  I   ++ + + ++  N 
Sbjct: 5   QRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDI---TLNNQKIVTFKN- 60

Query: 371 SVSNNSRTLDQG-LCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISS 429
              +  R L    L     ++ L++ D  +     +  A   +++ L +  N  I  +  
Sbjct: 61  ---STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPP 116

Query: 430 SPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQ 489
               ++  +  L+L  N     +      N  +L      NN +  E IE  +       
Sbjct: 117 HVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNL--ERIEDDTFQ-ATTS 172

Query: 490 LQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDS 549
           LQ+L LSS     +           L +  +S+  ++       L     + +L   ++S
Sbjct: 173 LQNLQLSSNRLTHVDLSLI----PSLFHANVSYNLLST------LAIPIAVEELDASHNS 222

Query: 550 LVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGN 609
           +     +    + +L +L +  NN        +      L   ++S N L+  +   F  
Sbjct: 223 IN---VVRGPVNVELTILKLQHNNLT-DTAWLLN--YPGLVEVDLSYNELEKIMYHPFVK 276

Query: 610 MNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEG 669
           M  L+ L +SNN+L   +  +      +L+ L LS+N+L  H+         L  L L+ 
Sbjct: 277 MQRLERLYISNNRLV-ALNLYGQ-PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDH 333

Query: 670 NHFVGEIPQSLSKCSSLQGLFLSNNSLSG----KIPRWLGNLTVL---RHIIMPKN---- 718
           N  V  +   LS   +L+ L LS+N         + R +    V    +H  +       
Sbjct: 334 NSIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHG 390

Query: 719 --HIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTF 776
               E   P     L+ + +  + +                + ++  +++ H  + +   
Sbjct: 391 LCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRC----SATDTINSVQSLSH-YITQQGG 445

Query: 777 FNCLTLMILDLSYNHLNGNIPD-RVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDL 835
                   L+   N L   +     + + Q   L   H  ++  +       + L     
Sbjct: 446 VPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSD 505

Query: 836 SNNNLHGHI 844
           + N +  H+
Sbjct: 506 NLNKVFTHL 514

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 93.1 bits (231), Expect = 1e-19
 Identities = 89/509 (17%), Positives = 175/509 (34%), Gaps = 52/509 (10%)

Query: 199 PKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLE 258
              L          +     +         L++ + +   ++ +   +     DS   +E
Sbjct: 20  DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVE 78

Query: 259 ELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRD-GSKLLQSMGSFPSLNTLDLSYNN 317
            L+++  +I+  +   A +    +  L++    IR     + Q++   P L  L L  N+
Sbjct: 79  LLNLNDLQIEEID-TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV---PLLTVLVLERND 134

Query: 318 FTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSR 377
            +         F +   L  L M +  +           ++  S+Q L LS+    N   
Sbjct: 135 LSSLPRGI---FHNTPKLTTLSMSNNNL---ERIEDDTFQATTSLQNLQLSS----NRLT 184

Query: 378 TLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTS 437
            +D  L  +  L   +++ N L       LA   ++  LD S N  I  +     + LT 
Sbjct: 185 HVDLSL--IPSLFHANVSYNLLST-----LAIPIAVEELDASHNS-INVVRGPVNVELTI 236

Query: 438 IEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSS 497
              L L  N+         L N+  L   D   NE+  E I  H       +L+ L +S+
Sbjct: 237 ---LKLQHNNL---TDTAWLLNYPGLVEVDLSYNEL--EKIMYHPF-VKMQRLERLYISN 287

Query: 498 GYRDGIT-FPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRL 556
              + +     +      L+ + LSH  +     N       +L  L L ++S+V    L
Sbjct: 288 ---NRLVALNLYGQPIPTLKVLDLSHNHLLHVERN--QPQFDRLENLYLDHNSIV---TL 339

Query: 557 PIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMN-----ALDGSIPSSFGNMN 611
            + +H  L+ L +S N++  +    +   ++R  V +   +      L+  +     +  
Sbjct: 340 KLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKP 399

Query: 612 FLQF-LDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGN 670
           +L   L         E  +     C +  ++    +            L     L+ E N
Sbjct: 400 YLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVN 459

Query: 671 HFVGEIPQ----SLSKCSSLQGLFLSNNS 695
               E+ Q     + +   LQGL    ++
Sbjct: 460 ELRAEVQQLTNEQIQQEQLLQGLHAEIDT 488

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  120 bits (303), Expect = 7e-29
 Identities = 89/454 (19%), Positives = 163/454 (35%), Gaps = 87/454 (19%)

Query: 560 SHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGN---------- 609
           S+  L+      +N    +P+E  + +   T +  + +  + + P   G           
Sbjct: 9   SNTFLQEPLRHSSNLT-EMPVEAEN-VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 610 ---MNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQ 666
                    L+L+N  L+  +PE        L SL  S N+L   +     +L +L+   
Sbjct: 67  DCLDRQAHELELNNLGLS-SLPELPP----HLESLVASCNSLT-ELPELPQSLKSLLVDN 120

Query: 667 LEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPL 726
                     P        L+ L +SNN L  K+P  L N + L+ I +  N ++  +P 
Sbjct: 121 NNLKALSDLPP-------LLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKK-LPD 170

Query: 727 EFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLT-LMIL 785
               L   + +   +N +   LP   +   +  ++   N L          +    L  +
Sbjct: 171 LPPSL---EFIAAGNNQLE-ELPELQNLPFLTAIYADNNSLK------KLPDLPLSLESI 220

Query: 786 DLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIP 845
               N L   +P+ +  L  L+ +   +N L+  +P        L+ L++ +N L   +P
Sbjct: 221 VAGNNILE-ELPE-LQNLPFLTTIYADNNLLK-TLPDLPP---SLEALNVRDNYLT-DLP 273

Query: 846 SCFDN-TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVP 904
               + T L    N  S L     +               L   + ++  I       + 
Sbjct: 274 ELPQSLTFLDVSENIFSGLSELPPN---------------LYYLNASSNEIR-----SLC 313

Query: 905 SLLSG---LDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLS 961
            L      L++S N+LI  +P     L +   L  S N+LA  +P    NL+    L + 
Sbjct: 314 DLPPSLEELNVSNNKLI-ELPALPPRLER---LIASFNHLAE-VPELPQNLK---QLHVE 365

Query: 962 YNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPE 995
           YN L  + P     +  L +     N+   ++PE
Sbjct: 366 YNPLR-EFPDIPESVEDLRM-----NSHLAEVPE 393

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  119 bits (300), Expect = 2e-28
 Identities = 89/446 (19%), Positives = 143/446 (32%), Gaps = 78/446 (17%)

Query: 537 NTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISM 596
           + +  +L L N  L     LP      L  L  S N+    +P      L  L V N ++
Sbjct: 70  DRQAHELELNNLGLS---SLP-ELPPHLESLVASCNSLT-ELPELPQS-LKSLLVDNNNL 123

Query: 597 NALDGSIPS---------------SFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSL 641
            AL    P                   N +FL+ +D+ NN L  ++P+       SL  +
Sbjct: 124 KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPP----SLEFI 178

Query: 642 ALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIP 701
           A  NN LE        NL  L  +  + N    ++P       SL+ +   NN L     
Sbjct: 179 AAGNNQLEE--LPELQNLPFLTAIYADNNSLK-KLPDLPL---SLESIVAGNNILE--EL 230

Query: 702 RWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVH 761
             L NL  L  I    N ++  +P     L  L + D    ++     S      ++   
Sbjct: 231 PELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPELPQSLTF---LDVSE 286

Query: 762 LSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVP 821
              + L              L  L+ S N +  ++ D       L  L +++N L  E+P
Sbjct: 287 NIFSGLSELPPN--------LYYLNASSNEIR-SLCDL---PPSLEELNVSNNKLI-ELP 333

Query: 822 IQLCRLNQLQLLDLSNNNLHGHIPSCFDN-TTLHERYNNGSSLQPFETSFVIMGGMDVDP 880
                  +L+ L  S N+L   +P    N   LH  YN                      
Sbjct: 334 ALPP---RLERLIASFNHLA-EVPELPQNLKQLHVEYNPLREFPD--------------- 374

Query: 881 KKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNN 940
              I ES +    +        +P  L  L +  N L    P    ++     L ++   
Sbjct: 375 ---IPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPESVED---LRMNSER 427

Query: 941 LAGPIPSTFSNLRNIESLDLSYNKLS 966
           +  P          +E     ++   
Sbjct: 428 VVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  119 bits (300), Expect = 2e-28
 Identities = 92/477 (19%), Positives = 161/477 (33%), Gaps = 97/477 (20%)

Query: 536 NNTKLRQLSLVNDSLVGPFRLP--IHSHKQLRLLDVSKNNFQGHIPLEIGDILS------ 587
           +NT L++    + +L     +P    + K       + + ++ + P   G+         
Sbjct: 9   SNTFLQEPLRHSSNLT---EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL 65

Query: 588 ------RLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSL 641
                 +     ++   L  S+P    +   L+ L  S N LT E+PE       SL   
Sbjct: 66  RDCLDRQAHELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELPELPQ-SLKSLLVD 119

Query: 642 ALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIP 701
             +   L             L +L +  N    ++P  L   S L+ + + NNSL  K+P
Sbjct: 120 NNNLKALSD-------LPPLLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLK-KLP 169

Query: 702 RWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVH 761
               +L  +       N +E  +P E   L  L  +   +N++   LP     + +E + 
Sbjct: 170 DLPPSLEFIA---AGNNQLEE-LP-ELQNLPFLTAIYADNNSLK-KLPDL--PLSLESIV 221

Query: 762 LSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVP 821
              N+L  +L E    N   L  +    N L   +PD       L  L +  N L  ++P
Sbjct: 222 AGNNILE-ELPE--LQNLPFLTTIYADNNLLK-TLPD---LPPSLEALNVRDNYLT-DLP 273

Query: 822 IQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPK 881
                L  L + +   + L    P+      L+   N   SL     S            
Sbjct: 274 ELPQSLTFLDVSENIFSGLSELPPNL---YYLNASSNEIRSLCDLPPS------------ 318

Query: 882 KQILESFDFTTKSITYTYQGRVPSLLSGL---DLSCNRLIGHIPPQIGNLTKIQTLNLSH 938
              LE  + +   +       +P+L   L     S N L   +P    NL +   L++ +
Sbjct: 319 ---LEELNVSNNKLI-----ELPALPPRLERLIASFNHL-AEVPELPQNLKQ---LHVEY 366

Query: 939 NNLAGPIPSTFSNLR----------------NIESLDLSYNKLSWKIPYQLVELNTL 979
           N L    P    ++                 N++ L +  N L  + P     +  L
Sbjct: 367 NPLRE-FPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPESVEDL 421

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  112 bits (281), Expect = 5e-26
 Identities = 98/546 (17%), Positives = 172/546 (31%), Gaps = 116/546 (21%)

Query: 296 SKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQII 355
           +++     +  S      +++ +                  E            +  ++ 
Sbjct: 24  TEMPVEAENVKSKTEYYNAWSEWERNAP---------PGNGEQ--------REMAVSRLR 66

Query: 356 GESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRI 415
                    L L+N        +L +      HL+ L  + N L   LP    ++ SL +
Sbjct: 67  DCLDRQAHELELNN----LGLSSLPELPP---HLESLVASCNSLT-ELPELPQSLKSLLV 118

Query: 416 LDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINA 475
            + +   L              +E L +S+N  +    L  L N S LKI D +NN +  
Sbjct: 119 DNNNLKALSDLPPL--------LEYLGVSNNQLE---KLPELQNSSFLKIIDVDNNSLK- 166

Query: 476 EIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLE 535
                                         P    +   LE++   + ++ EE P   L+
Sbjct: 167 ----------------------------KLPDLPPS---LEFIAAGNNQL-EELPE--LQ 192

Query: 536 NNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNIS 595
           N   L  +   N+SL     LP      L  +    N        E+ + L  LT     
Sbjct: 193 NLPFLTAIYADNNSLKKLPDLP----LSLESIVAGNNIL--EELPELQN-LPFLTTIYAD 245

Query: 596 MNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSR 655
            N L  ++P    +   L+ L++ +N LT ++PE       SL  L +S N         
Sbjct: 246 NNLL-KTLPDLPPS---LEALNVRDNYLT-DLPELPQ----SLTFLDVSENIFS----GL 292

Query: 656 NFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIM 715
           +    NL +L    N     +        SL+ L +SNN L  ++P     L  L   I 
Sbjct: 293 SELPPNLYYLNASSNEIR-SLCDLPP---SLEELNVSNNKLI-ELPALPPRLERL---IA 344

Query: 716 PKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGT 775
             NH+   +P     L+ L    +  N +    P            +    ++  L E  
Sbjct: 345 SFNHLAE-VPELPQNLKQL---HVEYNPLR-EFPD-------IPESVEDLRMNSHLAEVP 392

Query: 776 FFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDL 835
                 L  L +  N L    PD       +  L +    +           ++L+    
Sbjct: 393 EL-PQNLKQLHVETNPLR-EFPD---IPESVEDLRMNSERVVDPYEFAHETTDKLEDDVF 447

Query: 836 SNNNLH 841
            +++ H
Sbjct: 448 EHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  102 bits (257), Expect = 5e-23
 Identities = 75/390 (19%), Positives = 138/390 (35%), Gaps = 83/390 (21%)

Query: 101 QQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDL 160
             LE L + +N +      E L  L   S LK++++     NNS+        SL  +  
Sbjct: 131 PLLEYLGVSNNQL------EKLPELQNSSFLKIIDV----DNNSLKKLPDLPPSLEFIAA 180

Query: 161 SANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNN 220
             N+L+   ++ EL +L  L  +    N + K      P     L ++       N+   
Sbjct: 181 GNNQLE---ELPELQNLPFLTAIYADNNSLKKL-----PDLPLSLESI---VAGNNIL-- 227

Query: 221 SILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLR 280
             L  L  L  L ++   +N L+ ++     D   +LE L++  N + +   P+    L 
Sbjct: 228 EELPELQNLPFLTTIYADNNLLK-TLP----DLPPSLEALNVRDNYLTDL--PELPQSLT 280

Query: 281 KLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYM 340
            L     +  G+ +           P+L  L+ S N                 SL+EL +
Sbjct: 281 FLDVSENIFSGLSE---------LPPNLYYLNASSNEIRSL-------CDLPPSLEELNV 324

Query: 341 DDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLR 400
            + +       L  +    P ++ L  S     N+   + +      +L++LH+  N LR
Sbjct: 325 SNNK-------LIELPALPPRLERLIASF----NHLAEVPELPQ---NLKQLHVEYNPLR 370

Query: 401 GSLPWCLANMT----------------SLRILDVSSNQLIGSISSSPLIHLTSIEDLILS 444
              P    ++                 +L+ L V +N L       P     S+EDL ++
Sbjct: 371 -EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIP----ESVEDLRMN 424

Query: 445 DNHFQIPISLEPLFNHSRLKIFDAENNEIN 474
                 P          +L+    E++  +
Sbjct: 425 SERVVDPYEFAHE-TTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  101 bits (254), Expect = 1e-22
 Identities = 85/531 (16%), Positives = 157/531 (29%), Gaps = 116/531 (21%)

Query: 100 FQQLESLDLRDNDIAGCVENEGLE----RLSRLSNLKMLNLVG-NLFNNSILSSLARLSS 154
            +         ++          E     +SRL +          L N  + S       
Sbjct: 33  VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPH 92

Query: 155 LTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLS 214
           L SL  S N L   +  +   SL+ L   N     +                 L+   +S
Sbjct: 93  LESLVASCNSLT-ELP-ELPQSLKSLLVDNNNLKALSDL-----------PPLLEYLGVS 139

Query: 215 GNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQ 274
            N      L  L   S L+ + + +N L+     K  D   +LE +    N++   E   
Sbjct: 140 NNQLEK--LPELQNSSFLKIIDVDNNSLK-----KLPDLPPSLEFIAAGNNQL---EELP 189

Query: 275 ACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKS 334
               L  L+ ++       D + L +      SL ++    N   E          +   
Sbjct: 190 ELQNLPFLTAIYA------DNNSLKKLPDLPLSLESIVAGNNILEELPE-----LQNLPF 238

Query: 335 LKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHM 394
           L  +Y D+         L+ + +  PS++ L++ +    N    L +    L  L     
Sbjct: 239 LTTIYADNNL-------LKTLPDLPPSLEALNVRD----NYLTDLPELPQSLTFLDVSEN 287

Query: 395 ADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHF-QIPIS 453
             + L    P       +L  L+ SSN++             S+E+L +S+N   ++P  
Sbjct: 288 IFSGLSELPP-------NLYYLNASSNEIRSLCDL-----PPSLEELNVSNNKLIELPAL 335

Query: 454 LEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQH 513
                   RL+   A  N +  E+ E          L+ L +              YN  
Sbjct: 336 P------PRLERLIASFNHLA-EVPELPQ------NLKQLHVE-------------YNP- 368

Query: 514 DLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNN 573
                         EFP+        +  L + +     P        + L+ L V  N 
Sbjct: 369 ------------LREFPDIP----ESVEDLRMNSHLAEVPELP-----QNLKQLHVETNP 407

Query: 574 FQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLT 624
            +   P         +    ++   +      +    + L+     ++   
Sbjct: 408 LR-EFPDIPE----SVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 98.1 bits (245), Expect = 2e-21
 Identities = 85/574 (14%), Positives = 174/574 (30%), Gaps = 131/574 (22%)

Query: 129 SNLKMLNLVGNLFNNSILSSL----ARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLN 184
            N+    L   L ++S L+ +      + S T    + +  + +         R++    
Sbjct: 6   RNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNA-PPGNGEQREMAVSR 64

Query: 185 IGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEG 244
           +                          +L+    N  + S       L SL+   N L  
Sbjct: 65  LRDC---------------LDRQAHELELN----NLGLSSLPELPPHLESLVASCNSLT- 104

Query: 245 SIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGS 304
            +  +   SL +L   + +   + +            L YL +    +      L  + +
Sbjct: 105 ELP-ELPQSLKSLLVDNNNLKALSDL--------PPLLEYLGVSNNQLEK----LPELQN 151

Query: 305 FPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQY 364
              L  +D+  N+  +                                  + +  PS+++
Sbjct: 152 SSFLKIIDVDNNSLKK----------------------------------LPDLPPSLEF 177

Query: 365 LSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLI 424
           ++  N    N    L + L  L  L  ++  +N L+  LP    +   L  +   +N L 
Sbjct: 178 IAAGN----NQLEELPE-LQNLPFLTAIYADNNSLK-KLPDLPLS---LESIVAGNNIL- 227

Query: 425 GSISSSPLIHLTSIEDLILSDNHF-QIPISLEPLFNHSRLKIFDAENNEINAEIIESHSL 483
                  L +L  +  +   +N    +P           L+  +  +N +         L
Sbjct: 228 --EELPELQNLPFLTTIYADNNLLKTLPDLP------PSLEALNVRDNYLT-------DL 272

Query: 484 TTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQL 543
                 L  L +S     G+   +   N   L Y+  S  ++       L +    L +L
Sbjct: 273 PELPQSLTFLDVSENIFSGL--SELPPN---LYYLNASSNEIRS-----LCDLPPSLEEL 322

Query: 544 SLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSI 603
           ++ N+ L+    LP     +L  L  S N+    +P         L   ++  N L    
Sbjct: 323 NVSNNKLI---ELP-ALPPRLERLIASFNHLA-EVPELPQ----NLKQLHVEYNPLR-EF 372

Query: 604 PSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLI 663
           P    ++  L+     N+ L  E+PE       +L+ L +  N L            ++ 
Sbjct: 373 PDIPESVEDLRM----NSHLA-EVPELPQ----NLKQLHVETNPLR----EFPDIPESVE 419

Query: 664 WLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLS 697
            L++     V     +      L+     ++   
Sbjct: 420 DLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 93.1 bits (232), Expect = 7e-20
 Identities = 67/345 (19%), Positives = 124/345 (35%), Gaps = 56/345 (16%)

Query: 655 RNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHII 714
           RN + T L       ++   E+P       S    + + +      P   G    +    
Sbjct: 6   RNVSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSR 64

Query: 715 MPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEG 774
           +             C  R    L++++  +S SLP       +E +  S N L  +L E 
Sbjct: 65  LRD-----------CLDRQAHELELNNLGLS-SLPE--LPPHLESLVASCNSLT-ELPEL 109

Query: 775 TFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLD 834
              +  +L++ + +   L+   P        L YL +++N LE ++P +L   + L+++D
Sbjct: 110 -PQSLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQLE-KLP-ELQNSSFLKIID 159

Query: 835 LSNNNLHGHIPSCFDN-TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTK 893
           + NN+L   +P    +   +    N    L                     L +      
Sbjct: 160 VDNNSLK-KLPDLPPSLEFIAAGNNQLEELPEL-------------QNLPFLTAIYADNN 205

Query: 894 SITYTYQGRVPSLLSGL---DLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFS 950
           S+      ++P L   L       N L     P++ NL  + T+   +N L   +P    
Sbjct: 206 SLK-----KLPDLPLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLKT-LPDLPP 257

Query: 951 NLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPE 995
           +L   E+L++  N L+  +P     L  L V    ++ LS   P 
Sbjct: 258 SL---EALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPN 298

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 84.3 bits (209), Expect = 5e-17
 Identities = 66/354 (18%), Positives = 122/354 (34%), Gaps = 70/354 (19%)

Query: 95  SLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSS 154
            L      LE +   +N +      E L  L  L  L  +       NNS+        S
Sbjct: 167 KLPDLPPSLEFIAAGNNQL------EELPELQNLPFLTAIYA----DNNSLKKLPDLPLS 216

Query: 155 LTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLS 214
           L S+    N L+   ++ EL +L  L  +    N++        P       +L+  ++ 
Sbjct: 217 LESIVAGNNILE---ELPELQNLPFLTTIYADNNLLKTL-----PDLPP---SLEALNVR 265

Query: 215 GNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQ 274
            N     +      L+ L       + L         +   NL  L+ S NEI +     
Sbjct: 266 DNYL-TDLPELPQSLTFLDVSENIFSGLS--------ELPPNLYYLNASSNEIRSL---- 312

Query: 275 ACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFP-HFK 333
            C     L  L++        +KL++     P L  L  S+N+  E         P   +
Sbjct: 313 -CDLPPSLEELNV------SNNKLIELPALPPRLERLIASFNHLAE--------VPELPQ 357

Query: 334 SLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELH 393
           +LK+L+++          L+   +   S++ L +++                  +L++LH
Sbjct: 358 NLKQLHVEYNP-------LREFPDIPESVEDLRMNSHLAEVPEL--------PQNLKQLH 402

Query: 394 MADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNH 447
           +  N LR   P       S+  L ++S +++             +ED +   +H
Sbjct: 403 VETNPLR-EFP---DIPESVEDLRMNSERVV-DPYEFAHETTDKLEDDVFEHHH 451

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  115 bits (291), Expect = 3e-28
 Identities = 45/320 (14%), Positives = 91/320 (28%), Gaps = 55/320 (17%)

Query: 128 LSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGR 187
            +  K+  +  +    ++ S      ++  LDLS N L   I   +L     LE LN+  
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSS 67

Query: 188 NMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSID 247
           N++           L  L+ L+  DL+ N      +  L    S+ +L   +N +   + 
Sbjct: 68  NVL------YETLDLESLSTLRTLDLNNNY-----VQELLVGPSIETLHAANNNIS-RVS 115

Query: 248 VKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPS 307
                     + + ++ N+I                                   G    
Sbjct: 116 ---CSRGQGKKNIYLANNKITMLRD---------------------------LDEGCRSR 145

Query: 308 LNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSL 367
           +  LDL  N          +      +L+ L +    I         +      ++ L L
Sbjct: 146 VQYLDLKLNEIDT--VNFAELAASSDTLEHLNLQYNFI---YDVKGQV--VFAKLKTLDL 198

Query: 368 SNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSI 427
           S+    N    +         +  + + +N L   +   L    +L   D+  N      
Sbjct: 199 SS----NKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGT 253

Query: 428 SSSPLIHLTSIEDLILSDNH 447
                     ++ +      
Sbjct: 254 LRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  112 bits (282), Expect = 4e-27
 Identities = 58/325 (17%), Positives = 121/325 (37%), Gaps = 60/325 (18%)

Query: 101 QQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDL 160
            + +   + D+ +   + +          N+K L+L GN  +    + LA  + L  L+L
Sbjct: 10  NRYKIEKVTDSSLKQALASL----RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 161 SANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNN 220
           S+N L    +  +L+SL  L  L++  N +         + L    +++    + N  + 
Sbjct: 66  SSNVLY---ETLDLESLSTLRTLDLNNNYV---------QELLVGPSIETLHAANNNISR 113

Query: 221 SILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLR 280
               S +R    +++ L +N++   +   +    S ++ LD+  NEID     +  +   
Sbjct: 114 ---VSCSRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 281 KLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYM 340
            L +L+L    I D    ++    F  L TLDLS N                        
Sbjct: 170 TLEHLNLQYNFIYD----VKGQVVFAKLKTLDLSSNKLAF-------------------- 205

Query: 341 DDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLR 400
                 +   F     +S   + ++SL N    N    +++ L    +L+   +  N   
Sbjct: 206 ------MGPEF-----QSAAGVTWISLRN----NKLVLIEKALRFSQNLEHFDLRGNGFH 250

Query: 401 -GSLPWCLANMTSLRILDVSSNQLI 424
            G+L    +    ++ +   + + +
Sbjct: 251 CGTLRDFFSKNQRVQTVAKQTVKKL 275

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  107 bits (270), Expect = 1e-25
 Identities = 50/352 (14%), Positives = 112/352 (31%), Gaps = 57/352 (16%)

Query: 675  EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRIL 734
            EI Q+ +     +   ++++SL   +     +   ++ + +  N +      +      L
Sbjct: 4    EIKQNGN---RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 735  QILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNG 794
            ++L++S N +            +  + L+ N +             ++  L  + N+++ 
Sbjct: 61   ELLNLSSNVLY-ETLDLESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNIS- 112

Query: 795  NIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHG-HIPSCFDN--- 850
             +            + LA+N +     +     +++Q LDL  N +   +      +   
Sbjct: 113  RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 851  -TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSG 909
               L+ +YN    +                  + +                      L  
Sbjct: 171  LEHLNLQYNFIYDV----------------KGQVVFAK-------------------LKT 195

Query: 910  LDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKI 969
            LDLS N+L   + P+  +   +  ++L +N L   I       +N+E  DL  N      
Sbjct: 196  LDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGT 253

Query: 970  PYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPI 1021
                       V +VA   +  K+  +  +  T     + G       P P 
Sbjct: 254  LRDFF-SKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDLPAPF 303

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  102 bits (256), Expect = 9e-24
 Identities = 59/332 (17%), Positives = 108/332 (32%), Gaps = 41/332 (12%)

Query: 92  LNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLAR 151
             ASL      ++ LDL  N ++     +    L+  + L++LNL  N+        L  
Sbjct: 25  ALASLRQSAWNVKELDLSGNPLSQISAAD----LAPFTKLELLNLSSNVLYE--TLDLES 78

Query: 152 LSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVF 211
           LS+L +LDL+ N       ++EL     +E L+   N I +          SR    K  
Sbjct: 79  LSTLRTLDLNNNY------VQELLVGPSIETLHAANNNISRV-------SCSRGQGKKNI 125

Query: 212 DLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFE 271
            L+ N             S ++ L L  N ++     +   S   LE L++ YN I + +
Sbjct: 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185

Query: 272 VPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPH 331
                    KL  L L    +   + +     S   +  + L  N          +    
Sbjct: 186 ---GQVVFAKLKTLDLSSNKL---AFMGPEFQSAAGVTWISLRNNKL----VLIEKALRF 235

Query: 332 FKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQE 391
            ++L+   +        T  L+        +Q ++             +  +  L H   
Sbjct: 236 SQNLEHFDLRGNGFHCGT--LRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGA 293

Query: 392 LHMADNDLRGSLPWCLANMTSLRILDVSSNQL 423
               D          L    + R++ +  +  
Sbjct: 294 YCCED----------LPAPFADRLIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 95.8 bits (239), Expect = 1e-21
 Identities = 50/289 (17%), Positives = 92/289 (31%), Gaps = 25/289 (8%)

Query: 459 NHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYV 518
           N +R KI    ++ +   +            ++ L LS      I+    L     LE +
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAW---NVKELDLSGNPLSQIS-AADLAPFTKLELL 63

Query: 519 RLSH--IKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQG 576
            LS   +    +      E+ + LR L L N+ +       +     +  L  + NN   
Sbjct: 64  NLSSNVLYETLDL-----ESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS- 112

Query: 577 HIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCV 636
            +    G     +    ++ N +        G  + +Q+LDL  N++       LA    
Sbjct: 113 RVSCSRGQGKKNI---YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 637 SLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSL 696
           +L  L L  N +             L  L L  N     +       + +  + L NN L
Sbjct: 170 TLEHLNLQYNFIY--DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL 226

Query: 697 SGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNIS 745
              I + L     L H  +  N       L     +  ++  ++   + 
Sbjct: 227 V-LIEKALRFSQNLEHFDLRGNGFHC-GTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 92.4 bits (230), Expect = 2e-20
 Identities = 53/349 (15%), Positives = 122/349 (34%), Gaps = 56/349 (16%)

Query: 352 LQIIGESMPSIQYLSLSNSSVSNNSRTLDQG-LCPLVHLQELHMADNDLRGSLPWCLANM 410
           +  I ++    +   +++    ++ +           +++EL ++ N L       LA  
Sbjct: 2   IHEIKQNGNRYKIEKVTD----SSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF 57

Query: 411 TSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAEN 470
           T L +L++SSN L     +  L  L+++  L L++N+      ++ L     ++   A N
Sbjct: 58  TKLELLNLSSNVL---YETLDLESLSTLRTLDLNNNY------VQELLVGPSIETLHAAN 108

Query: 471 NEINAEIIESHSLTTPNFQ-LQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEF 529
           N I+        ++    Q  +++ L+              N+       ++ +      
Sbjct: 109 NNIS-------RVSCSRGQGKKNIYLA-------------NNK-------ITML------ 135

Query: 530 PNWLLENNTKLRQLSLVNDSLVG-PFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSR 588
            +      ++++ L L  + +    F     S   L  L++  N     +  ++    ++
Sbjct: 136 RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV--FAK 192

Query: 589 LTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNL 648
           L   ++S N L   +   F +   + ++ L NN+L   I + L     +L    L  N  
Sbjct: 193 LKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALR-FSQNLEHFDLRGNGF 249

Query: 649 EGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLS 697
                 R+F   N     +          Q+  +C+             
Sbjct: 250 H-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCE 297

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 75.8 bits (187), Expect = 9e-15
 Identities = 48/343 (13%), Positives = 109/343 (31%), Gaps = 52/343 (15%)

Query: 251 FDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNT 310
             + +  +   ++ + +              +  L L    +   S     +  F  L  
Sbjct: 6   KQNGNRYKIEKVTDSSLKQAL-ASLRQSAWNVKELDLSGNPLSQISA--ADLAPFTKLEL 62

Query: 311 LDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNS 370
           L+LS N   E     T       +L+ L +++  +              PSI+ L  +N 
Sbjct: 63  LNLSSNVLYE-----TLDLESLSTLRTLDLNNNYV---QEL-----LVGPSIETLHAAN- 108

Query: 371 SVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSS 430
              NN   +          + +++A+N +           + ++ LD+  N+ I +++ +
Sbjct: 109 ---NNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFA 162

Query: 431 PLI-HLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQ 489
            L     ++E L L  N       ++     ++LK  D  +N++     E  S       
Sbjct: 163 ELAASSDTLEHLNLQYNFIY---DVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAA----G 215

Query: 490 LQSLLLSSGYRDGIT-FPKFLYNQHDLEYVRLSH-----IKMNEEFPNWLLENNTKLRQL 543
           +  + L +   + +    K L    +LE+  L         + + F           + +
Sbjct: 216 VTWISLRN---NKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272

Query: 544 SLVNDSLVGPFRLPIHSHKQ------------LRLLDVSKNNF 574
             +         +P   H               RL+ +  ++ 
Sbjct: 273 KKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.5 bits (124), Expect = 7e-07
 Identities = 16/70 (22%), Positives = 30/70 (42%)

Query: 921 IPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLA 980
           I     N  + +   ++ ++L   + S   +  N++ LDLS N LS      L     L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 981 VFSVAYNNLS 990
           + +++ N L 
Sbjct: 62  LLNLSSNVLY 71

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  115 bits (290), Expect = 3e-27
 Identities = 88/436 (20%), Positives = 143/436 (32%), Gaps = 75/436 (17%)

Query: 602  SIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNF-NLT 660
             +P+       + ++DLS N +  E+ E        L+ L +        + +  F  L+
Sbjct: 27   ELPAH------VNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS 79

Query: 661  NLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSL-SGKIPR-WLGNLTVLRHIIMPKN 718
            +LI L+L+ N F+     + +  ++L+ L L+  +L    +   +   LT L  +++  N
Sbjct: 80   SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139

Query: 719  HIEGPIPLE-FCQLRILQILDISDNNISGSLPSCYDFVCIEQV---HLSKNMLH------ 768
            +I+   P   F  +R   +LD++ N +             +      LS   L       
Sbjct: 140  NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYW 199

Query: 769  -GQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRL 827
             G  K G  F   ++  LDLS N    ++  R       + +     +            
Sbjct: 200  LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN---SYNMGSSF 256

Query: 828  NQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILES 887
                  D  N    G   S     T     +   +L                        
Sbjct: 257  GHTNFKDPDNFTFKGLEAS--GVKTCDLSKSKIFALLK--------------------SV 294

Query: 888  FDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIP 946
            F   T              L  L L+ N  I  I       LT +  LNLS N L     
Sbjct: 295  FSHFTD-------------LEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNFLGSIDS 340

Query: 947  STFSNLRNIESLDLSYNKLSWKIPYQ----LVELNTLAVFSVAYNNLSGKIPERAAQFAT 1002
              F NL  +E LDLSYN +   +  Q    L  L  L   ++  N L   +P+    F  
Sbjct: 341  RMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKEL---ALDTNQLK-SVPDGI--FDR 393

Query: 1003 FNESSY---EGNPFLC 1015
                       NP+ C
Sbjct: 394  LTSLQKIWLHTNPWDC 409

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  112 bits (282), Expect = 3e-26
 Identities = 67/340 (19%), Positives = 126/340 (37%), Gaps = 28/340 (8%)

Query: 129 SNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRN 188
           +++  ++L  N       +S +RL  L  L +        I       L  L  L +  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 189 MIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILS--SLARLSSLRSLLLYDNRLEGSI 246
              +          + L NL+V  L+    + ++LS      L+SL  L+L DN ++   
Sbjct: 90  QFLQL----ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ 145

Query: 247 DVKEFDSLSNLEELDMSYNEIDNFE----VPQACSGLRKLSYLHLLRVGIRDGSKLLQSM 302
               F ++     LD+++N++ +      +         L    +    + +     +  
Sbjct: 146 PASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205

Query: 303 GSF---PSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIAL---------NTS 350
           G+     S+ TLDLS N F E++            ++ L + ++             +  
Sbjct: 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265

Query: 351 FLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLC-PLVHLQELHMADNDLRGSLPWCLAN 409
                G     ++   LS     +    L + +      L++L +A N++          
Sbjct: 266 NFTFKGLEASGVKTCDLSK----SKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG 321

Query: 410 MTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQ 449
           +T L  L++S N L GSI S    +L  +E L LS NH +
Sbjct: 322 LTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIR 360

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  106 bits (266), Expect = 4e-24
 Identities = 81/401 (20%), Positives = 139/401 (34%), Gaps = 51/401 (12%)

Query: 76  VVVLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLN 135
           V  +DLS     E   LN + F+  Q L+ L +        + N        LS+L +L 
Sbjct: 32  VNYVDLSLNSIAE---LNETSFSRLQDLQFLKVEQQTPGLVIRNNT---FRGLSSLIILK 85

Query: 136 LVGNLFNNSILSSLARLSSLTSLDLSANRLKGS-IDIKELDSLRDLEKLNIGRNMIDKFV 194
           L  N F      +   L++L  L L+   L G+ +       L  LE L +  N I K  
Sbjct: 86  LDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ 145

Query: 195 VSKGPKRL-SRLNNLKVFDLSGNLFNNSILSSLARLSS--LRSLLLYDNRLE-------G 244
               P      +    V DL+ N   +     L          L L    L+       G
Sbjct: 146 ----PASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG 201

Query: 245 SIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQ---- 300
                     +++  LD+S N        +    +       L+     +          
Sbjct: 202 WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF 261

Query: 301 ---SMGSF-----PSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIAL--NTS 350
                 +F       + T DLS +     + +    F HF  L++L +    I    + +
Sbjct: 262 KDPDNFTFKGLEASGVKTCDLSKSKIFALLKSV---FSHFTDLEQLTLAQNEINKIDDNA 318

Query: 351 FLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLC-PLVHLQELHMADNDLRGSLPWCL-A 408
           F       +  +  L+LS     N   ++D  +   L  L+ L ++ N +R +L      
Sbjct: 319 F-----WGLTHLLKLNLSQ----NFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFL 368

Query: 409 NMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQ 449
            + +L+ L + +NQL  S+       LTS++ + L  N + 
Sbjct: 369 GLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 98.7 bits (246), Expect = 1e-21
 Identities = 86/463 (18%), Positives = 147/463 (31%), Gaps = 92/463 (19%)

Query: 387 VHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDN 446
            H+  + ++ N +        + +  L+ L V        I ++    L+S+  L L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 447 HFQIPISLEP-LFNH-SRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGIT 504
            F     LE   FN  + L++                        L   +LS  +   +T
Sbjct: 90  QFL---QLETGAFNGLANLEVLTLTQC-----------------NLDGAVLSGNFFKPLT 129

Query: 505 FPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQL 564
                     LE + L    + +  P     N  +   L L  + +     +        
Sbjct: 130 ---------SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK---SICEEDLLNF 177

Query: 565 RLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLT 624
           +    +               LS +T+ +++   L      +      +  LDLS N   
Sbjct: 178 QGKHFTLLR------------LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK 225

Query: 625 GEIPEHL--AMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSK 682
             + +    A+    ++SL LSN+   G  F          +   +   F G       +
Sbjct: 226 ESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT------NFKDPDNFTFKG------LE 273

Query: 683 CSSLQGLFLSNN---SLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDI 739
            S ++   LS +   +L   +     +L  L    + +N I       F  L  L  L++
Sbjct: 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLT---LAQNEINKIDDNAFWGLTHLLKLNL 330

Query: 740 SDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDR 799
           S N +  S+                           F N   L +LDLSYNH+   + D+
Sbjct: 331 SQNFLG-SID-----------------------SRMFENLDKLEVLDLSYNHI-RALGDQ 365

Query: 800 V-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH 841
              GL  L  L L  N L+        RL  LQ + L  N   
Sbjct: 366 SFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 92.1 bits (229), Expect = 1e-19
 Identities = 94/473 (19%), Positives = 153/473 (32%), Gaps = 103/473 (21%)

Query: 207 NLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNE 266
           ++   DLS N       +S +RL  L+ L +        I    F  LS+L  L + YN+
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 267 IDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSF---PSLNTLDLSYNNFTETVT 323
               E   A +GL  L  L L +  +     +L     F    SL  L L  NN  +   
Sbjct: 91  FLQLE-TGAFNGLANLEVLTLTQCNLD--GAVLSG-NFFKPLTSLEMLVLRDNNIKKIQP 146

Query: 324 TTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGL 383
            +   F + +    L +   ++           +S+     L+      +          
Sbjct: 147 ASF--FLNMRRFHVLDLTFNKV-----------KSICEEDLLNFQGKHFTLLR------- 186

Query: 384 CPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLIL 443
             L  +    M +  L           TS+  LD+S N    S++      +   +   L
Sbjct: 187 --LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSL 244

Query: 444 SDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGI 503
             ++     S     N                           NF  + L  S       
Sbjct: 245 ILSNSYNMGSSFGHTNFKDP----------------------DNFTFKGLEASG------ 276

Query: 504 TFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQ 563
                      ++   LS  K+       +  + T L QL+L                  
Sbjct: 277 -----------VKTCDLSKSKIF-ALLKSVFSHFTDLEQLTL------------------ 306

Query: 564 LRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPS-SFGNMNFLQFLDLSNNQ 622
                 ++N     I       L+ L   N+S N L GSI S  F N++ L+ LDLS N 
Sbjct: 307 ------AQNEIN-KIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNH 358

Query: 623 LTGEIPEHLAMGCVSLRSLALSNNNLE---GHMFSRNFNLTNLIWLQLEGNHF 672
           +   + +   +G  +L+ LAL  N L+     +F     LT+L  + L  N +
Sbjct: 359 IR-ALGDQSFLGLPNLKELALDTNQLKSVPDGIFD---RLTSLQKIWLHTNPW 407

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  113 bits (285), Expect = 2e-26
 Identities = 101/515 (19%), Positives = 178/515 (34%), Gaps = 65/515 (12%)

Query: 296 SKLLQSM--GSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQ 353
              L  +          L++S N  +E     T        L+ L +   RI        
Sbjct: 9   KNGLIHVPKDLSQKTTILNISQNYISE---LWTSDILSLSKLRILIISHNRI---QYLDI 62

Query: 354 IIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWC--LANMT 411
            + +    ++YL LS+    N    +     P V+L+ L ++ N    +LP C    NM+
Sbjct: 63  SVFKFNQELEYLDLSH----NKLVKIS--CHPTVNLKHLDLSFNAFD-ALPICKEFGNMS 115

Query: 412 SLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFN--HSRLKIFDAE 469
            L+ L +S+  L    S  P+ HL   + L++    +      E L +     L I    
Sbjct: 116 QLKFLGLSTTHL-EKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174

Query: 470 NNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEF 529
           N E +  I++    T  N +L ++           F   L        +    +   E  
Sbjct: 175 NKEFHF-ILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETT 233

Query: 530 PNWLLE-----NNTKLRQLSLVNDSLVGP-----FRLPIHSHKQLRLLDVSKNNFQGHIP 579
            N  +       +T +   S+ N  L G      F     S K L +  V  + F     
Sbjct: 234 WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGF-PQ 292

Query: 580 LEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLR 639
             I +I S + + N +++            ++    LD SNN LT +           L 
Sbjct: 293 SYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT-DTVFENCGHLTELE 351

Query: 640 SLALSNNNLE--GHMFSRNFNLTNLIWLQLEGNHFVGEIPQSL-SKCSSLQGLFLSNNSL 696
           +L L  N L+    +      + +L  L +  N    +  +   S   SL  L +S+N L
Sbjct: 352 TLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL 411

Query: 697 SGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPS-CYDFV 755
           +  I R                          C    +++LD+  N I  S+P       
Sbjct: 412 TDTIFR--------------------------CLPPRIKVLDLHSNKIK-SIPKQVVKLE 444

Query: 756 CIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYN 790
            +++++++ N L   + +G F    +L  + L  N
Sbjct: 445 ALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  113 bits (283), Expect = 4e-26
 Identities = 93/519 (17%), Positives = 171/519 (32%), Gaps = 69/519 (13%)

Query: 207 NLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNE 266
              + ++S N  +    S +  LS LR L++  NR++  +D+  F     LE LD+S+N+
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNK 80

Query: 267 IDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSF---PSLNTLDLSYNNFTETVT 323
           +       +C     L +L L           L     F     L  L LS  +  ++  
Sbjct: 81  LVKI----SCHPTVNLKHLDLSFNAFDA----LPICKEFGNMSQLKFLGLSTTHLEKSS- 131

Query: 324 TTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGL 383
                      L    +               G    + + L +   +       LD  +
Sbjct: 132 -----VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSV 186

Query: 384 CPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLIL 443
             + +L+  ++          + L+ +  L+     SN               ++ ++  
Sbjct: 187 KTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSN--------------LTLNNIET 232

Query: 444 SDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGI 503
           + N F   I +  L  H+ +  F   N ++  ++                          
Sbjct: 233 TWNSF---IRILQLVWHTTVWYFSISNVKLQGQL-------------------------- 263

Query: 504 TFPKFLYNQHDLEYVRLSHIKMNE--EFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSH 561
            F  F Y+   L+ + +  +  +      +++ E  + +   +           L     
Sbjct: 264 DFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKI 323

Query: 562 KQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALD--GSIPSSFGNMNFLQFLDLS 619
                LD S N        E    L+ L    + MN L     I      M  LQ LD+S
Sbjct: 324 SPFLHLDFSNNLLT-DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS 382

Query: 620 NNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQS 679
            N ++ +  +       SL SL +S+N L   +F        +  L L  N     IP+ 
Sbjct: 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC--LPPRIKVLDLHSNKIK-SIPKQ 439

Query: 680 LSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKN 718
           + K  +LQ L +++N L          LT L+ I +  N
Sbjct: 440 VVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  106 bits (266), Expect = 6e-24
 Identities = 81/445 (18%), Positives = 144/445 (32%), Gaps = 46/445 (10%)

Query: 558 IHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLD 617
           I S  +LR+L +S N  Q ++ + +      L   ++S N L   I         L+ LD
Sbjct: 41  ILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKL-VKIS--CHPTVNLKHLD 96

Query: 618 LSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNL-IWLQLEGNHFVGEI 676
           LS N                L+ L LS  +LE        +L    + L L   +   E 
Sbjct: 97  LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKED 156

Query: 677 PQSLSKC--SSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEG------PIPLEF 728
           P+ L      SL  +F +N      +   +  +  L    +     +        I  + 
Sbjct: 157 PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKL 216

Query: 729 CQLRILQILDISDNNISG----SLPSCYDFVCIEQVHLSKNMLHGQLK----EGTFFNCL 780
                L  L +++   +      +        +    +S   L GQL     + +  +  
Sbjct: 217 QTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLK 276

Query: 781 TLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNL 840
            L I  +  +          +  S ++      +       +   +++    LD SNN L
Sbjct: 277 ALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL 336

Query: 841 HGHIPSCFDN----TTLHERYNNGSSLQPFETSF------------------VIMGGMDV 878
              +     +     TL  + N    L                             G   
Sbjct: 337 TDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS 396

Query: 879 DPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSH 938
             K   L S + ++  +T T    +P  +  LDL  N++   IP Q+  L  +Q LN++ 
Sbjct: 397 WTKS--LLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKI-KSIPKQVVKLEALQELNVAS 453

Query: 939 NNLAGPIPSTFSNLRNIESLDLSYN 963
           N L       F  L +++ + L  N
Sbjct: 454 NQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  105 bits (263), Expect = 1e-23
 Identities = 83/507 (16%), Positives = 164/507 (32%), Gaps = 66/507 (13%)

Query: 255 SNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQS--MGSF---PSLN 309
                L++S N I           L KL  L +           +Q   +  F     L 
Sbjct: 21  QKTTILNISQNYISELW-TSDILSLSKLRILII-------SHNRIQYLDISVFKFNQELE 72

Query: 310 TLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSN 369
            LDLS+N   +             +LK L +       N               + +L  
Sbjct: 73  YLDLSHNKLVKI------SCHPTVNLKHLDLSF-----N--------------AFDALPI 107

Query: 370 SSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISS 429
                N          +  L+ L ++   L  S    +A++   ++L V           
Sbjct: 108 CKEFGN----------MSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDP 157

Query: 430 SPLIHLTSIEDLILSDNHFQIPISLEPLFN------HSRLKIFDAENNEINAEIIESHSL 483
             L    +    I+   + +    L+           S +K    +N       I +   
Sbjct: 158 EGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQ 217

Query: 484 TTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNE----EFPNWLLENNTK 539
           T P     +L       +       L     + Y  +S++K+         ++   +   
Sbjct: 218 TNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKA 277

Query: 540 LRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNAL 599
           L    +V+D    P          + + + + +  +  + +     +S     + S N L
Sbjct: 278 LSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRM-VHMLCPSKISPFLHLDFSNNLL 336

Query: 600 DGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAM--GCVSLRSLALSNNNLEGHMFSRNF 657
             ++  + G++  L+ L L  NQL  E+ +   M     SL+ L +S N++       + 
Sbjct: 337 TDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC 395

Query: 658 -NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMP 716
               +L+ L +  N     I + L     ++ L L +N +   IP+ +  L  L+ + + 
Sbjct: 396 SWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVA 452

Query: 717 KNHIEGPIPLEFCQLRILQILDISDNN 743
            N ++      F +L  LQ + +  N 
Sbjct: 453 SNQLKSVPDGIFDRLTSLQKIWLHTNP 479

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  104 bits (260), Expect = 3e-23
 Identities = 90/555 (16%), Positives = 177/555 (31%), Gaps = 106/555 (19%)

Query: 103 LESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSA 162
              L++  N I+    ++    +  LS L++L +  N      +S       L  LDLS 
Sbjct: 23  TTILNISQNYISELWTSD----ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78

Query: 163 NRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSI 222
           N+L   I         +L+ L++  N  D        K    ++ LK   LS      S 
Sbjct: 79  NKLV-KISC---HPTVNLKHLDLSFNAFDAL---PICKEFGNMSQLKFLGLSTTHLEKSS 131

Query: 223 LSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDN----FEVPQACSG 278
           +  +A L+  + LL+         + ++ + L +     +      N    F +  +   
Sbjct: 132 VLPIAHLNISKVLLVLGETY---GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKT 188

Query: 279 LRKLSYLHLLRVGIRDGSKLLQSMGS----FPSLNTLDLSYNNFTETVTTTTQGFPHFKS 334
           +  L   ++  V   +      S+ +     P L+ L L+    T              +
Sbjct: 189 VANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTT 248

Query: 335 LKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHM 394
           +    + + ++       +    S  S++ LS+                    ++   + 
Sbjct: 249 VWYFSISNVKL-QGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNF 307

Query: 395 ADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISL 454
             +  R     C + ++    LD S+N L          HLT +E LIL  N        
Sbjct: 308 TVSGTRMVHMLCPSKISPFLHLDFSNNLLT-DTVFENCGHLTELETLILQMN-------- 358

Query: 455 EPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHD 514
                                             QL+ L   +     +   + L    D
Sbjct: 359 ----------------------------------QLKELSKIAEMTTQMKSLQQL----D 380

Query: 515 LEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLV-GPFRLPIHSHKQLRLLDVSKNN 573
           +    +S+ +   +  +W       L  L++ ++ L    FR       ++++LD+  N 
Sbjct: 381 ISQNSVSYDEKKGDC-SWT----KSLLSLNMSSNILTDTIFRCLPP---RIKVLDLHSNK 432

Query: 574 FQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAM 633
            +                          SIP     +  LQ L++++NQL   +P+ +  
Sbjct: 433 IK--------------------------SIPKQVVKLEALQELNVASNQLK-SVPDGIFD 465

Query: 634 GCVSLRSLALSNNNL 648
              SL+ + L  N  
Sbjct: 466 RLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  103 bits (259), Expect = 4e-23
 Identities = 86/450 (19%), Positives = 158/450 (35%), Gaps = 44/450 (9%)

Query: 566 LLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTG 625
           L+D SKN    H+P    D+  + T+ NIS N +     S   +++ L+ L +S+N++  
Sbjct: 4   LVDRSKNGLI-HVP---KDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ- 58

Query: 626 EIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQS--LSKC 683
            +   +      L  L LS+N L            NL  L L  N F   +P        
Sbjct: 59  YLDISVFKFNQELEYLDLSHNKLVKISCHP---TVNLKHLDLSFNAF-DALPICKEFGNM 114

Query: 684 SSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHI---EGPIPLEFCQLRILQILDIS 740
           S L+ L LS   L       + +L + + +++        E P  L+      L I+  +
Sbjct: 115 SQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174

Query: 741 DNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMI------LDLSYNHLNG 794
           +      L      V   ++   K +L              L        L L+      
Sbjct: 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTW 234

Query: 795 NIPDRVDGL---SQLSYLILAHNNLEG-----EVPIQLCRLNQLQLLDLSNNNLHGHIPS 846
           N   R+  L   + + Y  +++  L+G     +       L  L +  + ++        
Sbjct: 235 NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSY 294

Query: 847 CFDN-TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPS 905
            ++  + ++ +    S  +           M    K       DF+   +T T       
Sbjct: 295 IYEIFSNMNIKNFTVSGTRMVH--------MLCPSKISPFLHLDFSNNLLTDTVFENCGH 346

Query: 906 L--LSGLDLSCNRL--IGHIPPQIGNLTKIQTLNLSHNNL-AGPIPSTFSNLRNIESLDL 960
           L  L  L L  N+L  +  I      +  +Q L++S N++         S  +++ SL++
Sbjct: 347 LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM 406

Query: 961 SYNKLSWKIPYQLVELNTLAVFSVAYNNLS 990
           S N L+  I   L     + V  +  N + 
Sbjct: 407 SSNILTDTIFRCL--PPRIKVLDLHSNKIK 434

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 91.8 bits (228), Expect = 2e-19
 Identities = 76/420 (18%), Positives = 141/420 (33%), Gaps = 38/420 (9%)

Query: 91  YLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLS--RLSNLKMLNLVGNLFNN-SILS 147
           YL+ S+F   Q+LE LDL  N          L ++S     NLK L+L  N F+   I  
Sbjct: 59  YLDISVFKFNQELEYLDLSHNK---------LVKISCHPTVNLKHLDLSFNAFDALPICK 109

Query: 148 SLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNN 207
               +S L  L LS   L+    +  +  L   + L +      +    +G +  +  + 
Sbjct: 110 EFGNMSQLKFLGLSTTHLE-KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESL 168

Query: 208 LKVFDLSGNL-------FNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEEL 260
             VF  +                  L+ +  +         L     ++    LSNL   
Sbjct: 169 HIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLN 228

Query: 261 DMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTE 320
           ++         + Q       + Y  +  V ++          S  SL  L +       
Sbjct: 229 NIETTWNSFIRILQLVWHTT-VWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV 287

Query: 321 TVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLD 380
                +  +  F ++       +          +    +    +L  SN+ +++   T+ 
Sbjct: 288 FGFPQSYIYEIFSNMNIKNFTVSG---TRMVHMLCPSKISPFLHLDFSNNLLTD---TVF 341

Query: 381 QGLCPLVHLQELHMADNDLRGSLPWC---LANMTSLRILDVSSNQLIGSISSSPLIHLTS 437
           +    L  L+ L +  N L+  L         M SL+ LD+S N +             S
Sbjct: 342 ENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400

Query: 438 IEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSS 497
           +  L +S N   +  ++        +K+ D  +N+I +   +   L      LQ L ++S
Sbjct: 401 LLSLNMSSN--ILTDTIFRCLPPR-IKVLDLHSNKIKSIPKQVVKLE----ALQELNVAS 453

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 89.2 bits (221), Expect = 2e-18
 Identities = 83/540 (15%), Positives = 164/540 (30%), Gaps = 89/540 (16%)

Query: 411 TSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEP-LFNH-SRLKIFDA 468
               IL++S N  I  + +S ++ L+ +  LI+S N  Q    L+  +F     L+  D 
Sbjct: 21  QKTTILNISQNY-ISELWTSDILSLSKLRILIISHNRIQ---YLDISVFKFNQELEYLDL 76

Query: 469 ENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEE 528
            +N++    I  H        L+ L LS             +N           + + +E
Sbjct: 77  SHNKLVK--ISCHPTV----NLKHLDLS-------------FNA-------FDALPICKE 110

Query: 529 FPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSR 588
           F N      ++L+ L L    L    +  +     L +  V     + +   E  + L  
Sbjct: 111 FGNM-----SQLKFLGLSTTHLE---KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQD 162

Query: 589 LTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNL 648
               ++ +            +++     +L  + +   + ++     +S+ +   +N  L
Sbjct: 163 FNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKL 222

Query: 649 EGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLT 708
                  N  L N+          +  +  +     S+  + L              +L 
Sbjct: 223 ------SNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLK 276

Query: 709 VLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYD-FVCIEQVHLSKNML 767
            L    +  +    P    +     + I + + +        C         +  S N+L
Sbjct: 277 ALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL 336

Query: 768 HGQLKEGTFFNCLTLMILDLSYNHLN--GNIPDRVDGLSQLSYLILAHNNLEGEVPIQLC 825
                     +   L  L L  N L     I +    +  L  L ++ N++  +     C
Sbjct: 337 T-DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC 395

Query: 826 -RLNQLQLLDLSNNNLHGHIPSCFDN--TTLHERYNNGSSLQPFETSFVIMGGMDVDPKK 882
                L  L++S+N L   I  C       L    N   S+                   
Sbjct: 396 SWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPK----------------- 438

Query: 883 QILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNL 941
              +                    L  L+++ N+L   +P  I   LT +Q + L  N  
Sbjct: 439 ---QVVKLEA--------------LQELNVASNQL-KSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 70.7 bits (173), Expect = 1e-12
 Identities = 39/176 (22%), Positives = 72/176 (40%), Gaps = 14/176 (7%)

Query: 92  LNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNN--SILSSL 149
           ++    +       LD  +N +     +   E    L+ L+ L L  N       I    
Sbjct: 315 VHMLCPSKISPFLHLDFSNNLLT----DTVFENCGHLTELETLILQMNQLKELSKIAEMT 370

Query: 150 ARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLK 209
            ++ SL  LD+S N +       +    + L  LN+  N++   +    P        +K
Sbjct: 371 TQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP------RIK 424

Query: 210 VFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYN 265
           V DL  N    SI   + +L +L+ L +  N+L+ S+    FD L++L+++ +  N
Sbjct: 425 VLDLHSNKI-KSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.1 bits (104), Expect = 3e-04
 Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 11/126 (8%)

Query: 94  ASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLS 153
           A + T  + L+ LD+  N ++    +E     S   +L  LN+  N+  ++I   L    
Sbjct: 367 AEMTTQMKSLQQLDISQNSVS---YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PP 421

Query: 154 SLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDL 213
            +  LDL +N++K SI  K++  L  L++LN+  N +    V  G     RL +L+   L
Sbjct: 422 RIKVLDLHSNKIK-SIP-KQVVKLEALQELNVASNQLKS--VPDGI--FDRLTSLQKIWL 475

Query: 214 SGNLFN 219
             N ++
Sbjct: 476 HTNPWD 481

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  114 bits (286), Expect = 3e-26
 Identities = 72/320 (22%), Positives = 118/320 (36%), Gaps = 52/320 (16%)

Query: 555 RLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQ 614
           ++    +    +L+V ++     +P  +   ++ L    I  N L  S+P+       L+
Sbjct: 33  KMRACLNNGNAVLNVGESGLT-TLPDCLPAHITTL---VIPDNNLT-SLPALPPE---LR 84

Query: 615 FLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVG 674
            L++S NQLT  +P     G + L   +    +L           + L  L + GN    
Sbjct: 85  TLEVSGNQLT-SLPVLPP-GLLELSIFSNPLTHLPA-------LPSGLCKLWIFGNQL-T 134

Query: 675 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRIL 734
            +P        LQ L +S+N L+  +P     L  L       N +   +P+       L
Sbjct: 135 SLPVLP---PGLQELSVSDNQLA-SLPALPSELCKLW---AYNNQLTS-LPMLPSG---L 183

Query: 735 QILDISDNNISGSLPSCYDFVCIEQVHLSKNMLH------GQLKE-GTFFNCLT------ 781
           Q L +SDN ++ SLP+      + ++    N L         LKE     N LT      
Sbjct: 184 QELSVSDNQLA-SLPT--LPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLP 240

Query: 782 --LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNN 839
             L  L +S N L  ++P      S L  L +  N L   +P  L  L+    ++L  N 
Sbjct: 241 SELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP 295

Query: 840 LHGHIPSCFDNTTLHERYNN 859
           L           T    Y+ 
Sbjct: 296 LSERTLQALREITSAPGYSG 315

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  109 bits (274), Expect = 1e-24
 Identities = 79/428 (18%), Positives = 126/428 (29%), Gaps = 104/428 (24%)

Query: 586  LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSN 645
             +   V N+  + L  ++P        +  L + +N LT  +P         LR+L +S 
Sbjct: 39   NNGNAVLNVGESGL-TTLPDCLPA--HITTLVIPDNNLT-SLPALPP----ELRTLEVSG 90

Query: 646  NNLEGHMFSRNF-NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWL 704
            N L           L  L        H            S L  L++  N L+  +P   
Sbjct: 91   NQLT--SLPVLPPGLLELSIFSNPLTHLPALP-------SGLCKLWIFGNQLT-SLPVLP 140

Query: 705  GNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSK 764
              L  L    +  N +   +P    +L     L   +N ++ SLP               
Sbjct: 141  PGLQELS---VSDNQLAS-LPALPSEL---CKLWAYNNQLT-SLPM-------------- 178

Query: 765  NMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQL 824
              L   L+E           L +S N L  ++P      S+L  L   +N L   +P   
Sbjct: 179  --LPSGLQE-----------LSVSDNQLA-SLPT---LPSELYKLWAYNNRLT-SLPALP 220

Query: 825  CRLNQLQLLDLSNNNLHGHIPSCFDN-TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQ 883
                 L+ L +S N L   +P        L    N  +SL P                  
Sbjct: 221  S---GLKELIVSGNRL-TSLPVLPSELKELMVSGNRLTSL-PML---------------- 259

Query: 884  ILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAG 943
                                PS L  L +  N+L   +P  + +L+   T+NL  N L+ 
Sbjct: 260  --------------------PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE 298

Query: 944  PIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATF 1003
                    + +         +          E   L     A + L        A    +
Sbjct: 299  RTLQALREITSAPGYSGPIIRFDMAGASAPRETRALH--LAAADWLVPAREGEPAPADRW 356

Query: 1004 NESSYEGN 1011
            +    E N
Sbjct: 357  HMFGQEDN 364

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  102 bits (255), Expect = 2e-22
 Identities = 71/373 (19%), Positives = 113/373 (30%), Gaps = 69/373 (18%)

Query: 100 FQQLESLDLRDNDIAGCVENEGLERL-SRLSNLKMLNLVGNLFNNSILSSLARLSSLTSL 158
              + +L + DN+         L  L +    L+ L + GN    S+      L  L+  
Sbjct: 60  PAHITTLVIPDNN---------LTSLPALPPELRTLEVSGNQL-TSLPVLPPGLLELSIF 109

Query: 159 DLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLF 218
                 L              L KL I  N +        P     L  L       ++ 
Sbjct: 110 SNPLTHLPALPS--------GLCKLWIFGNQLTSL-----PVLPPGLQEL-------SVS 149

Query: 219 NNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSG 278
           +N + S  A  S L  L  Y+N+L  S+        S L+EL +S N++    +P   S 
Sbjct: 150 DNQLASLPALPSELCKLWAYNNQLT-SLP----MLPSGLQELSVSDNQLA--SLPTLPSE 202

Query: 279 LRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKEL 338
           L KL   +          +L         L  L +S N  T               LKEL
Sbjct: 203 LYKLWAYNN---------RLTSLPALPSGLKELIVSGNRLTSL-------PVLPSELKEL 246

Query: 339 YMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADND 398
            +   R       L  +      +  LS+      N    L + L  L     +++  N 
Sbjct: 247 MVSGNR-------LTSLPMLPSGLLSLSVYR----NQLTRLPESLIHLSSETTVNLEGNP 295

Query: 399 LRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLF 458
           L          +  +      S  +I     +          L L+   + +P       
Sbjct: 296 LS-ERTLQ--ALREITSAPGYSGPII-RFDMAGASAPRETRALHLAAADWLVPAREGEPA 351

Query: 459 NHSRLKIFDAENN 471
              R  +F  E+N
Sbjct: 352 PADRWHMFGQEDN 364

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 95.0 bits (236), Expect = 4e-20
 Identities = 70/363 (19%), Positives = 112/363 (30%), Gaps = 77/363 (21%)

Query: 150 ARLSSLTSLDLSANRLK---------------GSIDIKEL-DSLRDLEKLNIGRNMIDKF 193
              +    L++  + L                   ++  L     +L  L +  N +   
Sbjct: 37  CLNNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSL 96

Query: 194 VVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDS 253
                P     L  L +F           L +L   S L  L ++ N+L  S+       
Sbjct: 97  -----PVLPPGLLELSIFSNPLTH-----LPAL--PSGLCKLWIFGNQLT-SLP----VL 139

Query: 254 LSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDL 313
              L+EL +S N++ +   P   S L KL   +          +L         L  L +
Sbjct: 140 PPGLQELSVSDNQLASL--PALPSELCKLWAYNN---------QLTSLPMLPSGLQELSV 188

Query: 314 SYNNFTETVTTTTQGFPH-FKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSV 372
           S N             P     L +L+  + R       L  +      ++ L +S    
Sbjct: 189 SDNQLAS--------LPTLPSELYKLWAYNNR-------LTSLPALPSGLKELIVSG--- 230

Query: 373 SNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPL 432
            N   +L         L+EL ++ N L  SLP      + L  L V  NQL   +  S L
Sbjct: 231 -NRLTSLPVLPS---ELKELMVSGNRLT-SLP---MLPSGLLSLSVYRNQLT-RLPES-L 280

Query: 433 IHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQS 492
           IHL+S   + L  N    P+S   L     +      +  I    +   S       L  
Sbjct: 281 IHLSSETTVNLEGN----PLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHL 336

Query: 493 LLL 495
              
Sbjct: 337 AAA 339

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 79.2 bits (195), Expect = 3e-15
 Identities = 72/379 (18%), Positives = 123/379 (32%), Gaps = 82/379 (21%)

Query: 201 RLSRLNNLKVFDLSGNLFNNSILSSL--ARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLE 258
           R    N   V ++  +      L++L     + + +L++ DN L  S+          L 
Sbjct: 35  RACLNNGNAVLNVGESG-----LTTLPDCLPAHITTLVIPDNNLT-SLP----ALPPELR 84

Query: 259 ELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNF 318
            L++S N++    +P    GL +LS        +               L  L +  N  
Sbjct: 85  TLEVSGNQLT--SLPVLPPGLLELSIFSNPLTHLPA---------LPSGLCKLWIFGNQL 133

Query: 319 TETVTTTTQGFP-HFKSLKELYMDDARIA-----------LNTSFLQI--IGESMPSIQY 364
           T          P     L+EL + D ++A           L     Q+  +      +Q 
Sbjct: 134 TS--------LPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQE 185

Query: 365 LSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLI 424
           LS+S+    N   +L         L +L   +N L  SLP   A  + L+ L VS N+L 
Sbjct: 186 LSVSD----NQLASLPTLPS---ELYKLWAYNNRLT-SLP---ALPSGLKELIVSGNRL- 233

Query: 425 GSISSSPLIHLTSIEDLILSDNHF-QIPISLEPLFNHSRLKIFDAENNEIN---AEIIES 480
            S+        + +++L++S N    +P+        S L       N++      +I  
Sbjct: 234 TSLPVL----PSELKELMVSGNRLTSLPMLP------SGLLSLSVYRNQLTRLPESLIHL 283

Query: 481 HSLTT-----------PNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEF 529
            S TT               L+ +  + GY   I            E   L     +   
Sbjct: 284 SSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLV 343

Query: 530 PNWLLENNTKLRQLSLVND 548
           P    E     R      +
Sbjct: 344 PAREGEPAPADRWHMFGQE 362

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 77.6 bits (191), Expect = 9e-15
 Identities = 58/275 (21%), Positives = 97/275 (35%), Gaps = 64/275 (23%)

Query: 726 LEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLH------GQLKEGTFFNC 779
           +  C      +L++ ++ ++ +LP C     I  + +  N L        +L+       
Sbjct: 34  MRACLNNGNAVLNVGESGLT-TLPDC-LPAHITTLVIPDNNLTSLPALPPELRT------ 85

Query: 780 LTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNN 839
                L++S N L  ++P    GL +LS       +L           + L  L +  N 
Sbjct: 86  -----LEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQ 132

Query: 840 LHGHIPSCFDN-TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYT 898
           L   +P        L    N  +SL    +                L         +T  
Sbjct: 133 LT-SLPVLPPGLQELSVSDNQLASLPALPSE---------------LCKLWAYNNQLT-- 174

Query: 899 YQGRVPSLLSG---LDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNI 955
               +P L SG   L +S N+L   +P     L K   L   +N L   +P+  S L+  
Sbjct: 175 ---SLPMLPSGLQELSVSDNQLA-SLPTLPSELYK---LWAYNNRLT-SLPALPSGLK-- 224

Query: 956 ESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLS 990
             L +S N+L+  +P    EL  L    V+ N L+
Sbjct: 225 -ELIVSGNRLT-SLPVLPSELKEL---MVSGNRLT 254

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  113 bits (284), Expect = 4e-26
 Identities = 50/239 (20%), Positives = 95/239 (39%), Gaps = 29/239 (12%)

Query: 100 FQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLD 159
           F +    +L+   +            + L+++  +    +   +  +  +  L ++T L 
Sbjct: 20  FAETIKDNLKKKSV------TDAVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLF 71

Query: 160 LSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFN 219
           L+ N+L    DIK L +L++L  L +  N I           L  L  LK   L  N  +
Sbjct: 72  LNGNKLT---DIKPLTNLKNLGWLFLDENKIKDLSS------LKDLKKLKSLSLEHNGIS 122

Query: 220 NSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGL 279
           +  ++ L  L  L SL L +N++    D+     L+ L+ L +  N+I +       +GL
Sbjct: 123 D--INGLVHLPQLESLYLGNNKIT---DITVLSRLTKLDTLSLEDNQISDIV---PLAGL 174

Query: 280 RKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKEL 338
            KL  L+L +  I D    L+++    +L+ L+L                    ++K  
Sbjct: 175 TKLQNLYLSKNHISD----LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 229

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  109 bits (273), Expect = 1e-24
 Identities = 61/402 (15%), Positives = 116/402 (28%), Gaps = 70/402 (17%)

Query: 103 LESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSA 162
           +         I      + +      +     NL      +    +   L+S+  +  + 
Sbjct: 1   MGETITVSTPI------KQIFPDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANN 52

Query: 163 NRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSI 222
           + +K    ++ +  L ++ KL +  N +         K L+ L NL    L  N      
Sbjct: 53  SDIK---SVQGIQYLPNVTKLFLNGNKLTDI------KPLTNLKNLGWLFLDEN--KIKD 101

Query: 223 LSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKL 282
           LSSL  L  L+SL L  N +    D+     L  LE L +  N+I +       S L KL
Sbjct: 102 LSSLKDLKKLKSLSLEHNGIS---DINGLVHLPQLESLYLGNNKITDIT---VLSRLTKL 155

Query: 283 SYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDD 342
             L L    I D    +  +     L  L LS N+ ++      +     K+L  L +  
Sbjct: 156 DTLSLEDNQISD----IVPLAGLTKLQNLYLSKNHISD-----LRALAGLKNLDVLELFS 206

Query: 343 ARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGS 402
                                                      LV    +   D  L   
Sbjct: 207 QECLNKP------------------------------INHQSNLVVPNTVKNTDGSLVT- 235

Query: 403 LPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSR 462
            P  +++       +V  +        +  +     + + +     +    +        
Sbjct: 236 -PEIISDDGDYEKPNVKWHL----PEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVY 290

Query: 463 LKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGIT 504
              +D +   I  ++     +T P    +   +  G+     
Sbjct: 291 TVSYDVDGTVIKTKVEAGTRITAPKPPTKQGYVFKGWYTEKN 332

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  105 bits (263), Expect = 2e-23
 Identities = 54/310 (17%), Positives = 120/310 (38%), Gaps = 33/310 (10%)

Query: 232 LRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVG 291
           +   +     ++    +   D+ +   + ++    + +       + L  +  +      
Sbjct: 1   MGETITVSTPIK---QIFPDDAFAETIKDNLKKKSVTDAV---TQNELNSIDQIIANNSD 54

Query: 292 IRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSF 351
           I+     +Q +   P++  L L+ N  T+      +   + K+L  L++D+ +I  + S 
Sbjct: 55  IKS----VQGIQYLPNVTKLFLNGNKLTDI-----KPLTNLKNLGWLFLDENKIK-DLSS 104

Query: 352 LQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMT 411
           L    + +  ++ LSL ++ +S+ +     GL  L  L+ L++ +N +       L+ +T
Sbjct: 105 L----KDLKKLKSLSLEHNGISDIN-----GLVHLPQLESLYLGNNKITDITV--LSRLT 153

Query: 412 SLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENN 471
            L  L +  NQ I  I   PL  LT +++L LS NH      L  L     L + +  + 
Sbjct: 154 KLDTLSLEDNQ-ISDIV--PLAGLTKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQ 207

Query: 472 EINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPN 531
           E   + I   S       +++   S    + I+        +   ++     +++  F  
Sbjct: 208 ECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQ 267

Query: 532 WLLENNTKLR 541
            +     K R
Sbjct: 268 PVTIGKAKAR 277

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  102 bits (254), Expect = 2e-22
 Identities = 51/221 (23%), Positives = 93/221 (42%), Gaps = 27/221 (12%)

Query: 100 FQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLD 159
              ++ +   ++DI      + ++ +  L N+  L L GN    + +  L  L +L  L 
Sbjct: 42  LNSIDQIIANNSDI------KSVQGIQYLPNVTKLFLNGN--KLTDIKPLTNLKNLGWLF 93

Query: 160 LSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFN 219
           L  N++K   D+  L  L+ L+ L++  N I           L  L  L+   L  N   
Sbjct: 94  LDENKIK---DLSSLKDLKKLKSLSLEHNGISDI------NGLVHLPQLESLYLGNN--K 142

Query: 220 NSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGL 279
            + ++ L+RL+ L +L L DN++    D+     L+ L+ L +S N I +     A +GL
Sbjct: 143 ITDITVLSRLTKLDTLSLEDNQIS---DIVPLAGLTKLQNLYLSKNHISDLR---ALAGL 196

Query: 280 RKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTE 320
           + L  L L      +  K +    +    NT+  +  +   
Sbjct: 197 KNLDVLELFSQECLN--KPINHQSNLVVPNTVKNTDGSLVT 235

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 90.9 bits (225), Expect = 7e-19
 Identities = 60/334 (17%), Positives = 113/334 (33%), Gaps = 27/334 (8%)

Query: 581 EIGDI-----LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGC 635
            I  I      +     N+   ++  ++      +N +  +  +N+ +   + + +    
Sbjct: 10  PIKQIFPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQ-YL 64

Query: 636 VSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNS 695
            ++  L L+ N L         NL NL WL L+ N  + ++  SL     L+ L L +N 
Sbjct: 65  PNVTKLFLNGNKLTD--IKPLTNLKNLGWLFLDENK-IKDL-SSLKDLKKLKSLSLEHNG 120

Query: 696 LSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFV 755
           +S  I   L +L  L  + +  N I     L   +L  L  L + DN IS  +       
Sbjct: 121 IS-DIN-GLVHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQIS-DIVPLAGLT 175

Query: 756 CIEQVHLSKNMLHGQLKEGTFFNCLT-LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHN 814
            ++ ++LSKN     + +      L  L +L+L          +    L   + +     
Sbjct: 176 KLQNLYLSKN----HISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 231

Query: 815 NLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSS---LQPFETSFV 871
           +L     I      +   +          +   F       +          QP +  + 
Sbjct: 232 SLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYT 291

Query: 872 IMGGMDVDPKKQILESFDFTTKSITYTYQGRVPS 905
           +   +D    K  +E+    T     T QG V  
Sbjct: 292 VSYDVDGTVIKTKVEAGTRITAPKPPTKQGYVFK 325

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 78.6 bits (193), Expect = 5e-15
 Identities = 37/157 (23%), Positives = 62/157 (39%), Gaps = 17/157 (10%)

Query: 102 QLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLS 161
           +L+SL L  N I        +  L  L  L+ L L  N    + ++ L+RL+ L +L L 
Sbjct: 110 KLKSLSLEHNGI------SDINGLVHLPQLESLYLGNN--KITDITVLSRLTKLDTLSLE 161

Query: 162 ANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNS 221
            N++    DI  L  L  L+ L + +N I         + L+ L NL V +L      N 
Sbjct: 162 DNQIS---DIVPLAGLTKLQNLYLSKNHISDL------RALAGLKNLDVLELFSQECLNK 212

Query: 222 ILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLE 258
            ++  + L    ++   D  L     + +        
Sbjct: 213 PINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPN 249

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 72.4 bits (177), Expect = 4e-13
 Identities = 50/348 (14%), Positives = 91/348 (26%), Gaps = 67/348 (19%)

Query: 686  LQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNIS 745
            +      +  +    P             + K  +   +     +L  +  +  ++++I 
Sbjct: 1    MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK 56

Query: 746  GSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLT-LMILDLSYNHLNGNIPDRVDGLS 804
             S+        + ++ L+ N    +L +      L  L  L L  N +  ++   +  L 
Sbjct: 57   -SVQGIQYLPNVTKLFLNGN----KLTDIKPLTNLKNLGWLFLDENKIK-DLSS-LKDLK 109

Query: 805  QLSYLILAHNN---LEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN----TTLHERY 857
            +L  L L HN    + G     L  L QL+ L L NN +     +         TL    
Sbjct: 110  KLKSLSLEHNGISDING-----LVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLED 162

Query: 858  NNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRL 917
            N  S + P                                       + L  L LS N  
Sbjct: 163  NQISDIVPLAGL-----------------------------------TKLQNLYLSKNH- 186

Query: 918  IGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKL----SWKIPYQL 973
            I  +   +  L  +  L L          +  SNL    ++  +   L            
Sbjct: 187  ISDLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDY 245

Query: 974  VELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPI 1021
             + N         N +S    +                  L       
Sbjct: 246  EKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVS 293

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 71.3 bits (174), Expect = 1e-12
 Identities = 42/226 (18%), Positives = 84/226 (37%), Gaps = 26/226 (11%)

Query: 534 LENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDI-----LSR 588
           ++    + +L L  + L      P+ + K L  L + +N         I D+     L +
Sbjct: 61  IQYLPNVTKLFLNGNKLTDIK--PLTNLKNLGWLFLDENK--------IKDLSSLKDLKK 110

Query: 589 LTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNL 648
           L   ++  N +  S  +   ++  L+ L L NN++T      L+     L +L+L +N +
Sbjct: 111 LKSLSLEHNGI--SDINGLVHLPQLESLYLGNNKIT--DITVLS-RLTKLDTLSLEDNQI 165

Query: 649 EGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLT 708
                     LT L  L L  NH + ++ ++L+   +L  L L +     K      NL 
Sbjct: 166 SD--IVPLAGLTKLQNLYLSKNH-ISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLV 221

Query: 709 VLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDF 754
           V   +      +  P  +        +  ++  +    +    + F
Sbjct: 222 VPNTVKNTDGSLVTPEIISDDG--DYEKPNVKWHLPEFTNEVSFIF 265

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  109 bits (274), Expect = 5e-26
 Identities = 51/346 (14%), Positives = 102/346 (29%), Gaps = 70/346 (20%)

Query: 515 LEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNF 574
            E +          + + L    ++ ++    + +         +S+   ++   +    
Sbjct: 14  RENLYFQGSTALRPYHDVL----SQWQRHYNADRNRWHSAWRQANSNN-PQIETRTGRAL 68

Query: 575 QGHIPLEIGDI-LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAM 633
           +      + D          +    L    P     ++ LQ + +    L  E+P+ +  
Sbjct: 69  K-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ- 124

Query: 634 GCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSN 693
                                       L  L L  N     +P S++  + L+ L +  
Sbjct: 125 ------------------------QFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA 159

Query: 694 NSLSGKIPRWLGNLTV---------LRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNI 744
                ++P  L +            L+ + +    I   +P     L+ L+ L I ++ +
Sbjct: 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPL 218

Query: 745 SGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLS 804
           S +L                             +   L  LDL       N P    G +
Sbjct: 219 S-ALGP------------------------AIHHLPKLEELDLRGCTALRNYPPIFGGRA 253

Query: 805 QLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN 850
            L  LIL   +    +P+ + RL QL+ LDL        +PS    
Sbjct: 254 PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  108 bits (273), Expect = 8e-26
 Identities = 52/397 (13%), Positives = 103/397 (25%), Gaps = 89/397 (22%)

Query: 586 LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPE--HLAMGCVSLRSLAL 643
            S         +                   D +            +  +   + R+L  
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKA 70

Query: 644 SNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRW 703
           + + LE      +      + L+L       + P    + S LQ + +    L  ++P  
Sbjct: 71  TADLLE------DATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDT 122

Query: 704 LGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLS 763
           +     L  + + +N +   +P     L  L+ L I        LP              
Sbjct: 123 MQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPE------------- 168

Query: 764 KNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQ 823
                                        + +      GL  L  L L    +   +P  
Sbjct: 169 --------------------------PLASTDASGEHQGLVNLQSLRLEWTGIR-SLPAS 201

Query: 824 LCRLNQLQLLDLSNNNLHGHIPSCFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVD 879
           +  L  L+ L + N+ L   +     +      L  R     +L+ +   F         
Sbjct: 202 IANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCT--ALRNYPPIF--------- 249

Query: 880 PKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHN 939
                                G    L   L L     +  +P  I  LT+++ L+L   
Sbjct: 250 ---------------------GGRAPLKR-LILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287

Query: 940 NLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVEL 976
                +PS  + L     + +  +  +    ++ V  
Sbjct: 288 VNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  104 bits (262), Expect = 2e-24
 Identities = 57/334 (17%), Positives = 113/334 (33%), Gaps = 47/334 (14%)

Query: 103 LESLDLRDNDIAGCVENEGLERL-SRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLS 161
            E+L  + +          L      LS  +      +          A  ++      +
Sbjct: 14  RENLYFQGS--------TALRPYHDVLSQWQRHYNA-DRNRWHSAWRQANSNNPQIETRT 64

Query: 162 ANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNS 221
              LK + D+ E  +      L +    + +F     P +  RL++L+   +        
Sbjct: 65  GRALKATADLLEDATQPGRVALELRSVPLPQF-----PDQAFRLSHLQHMTIDAAGLM-E 118

Query: 222 ILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYN--------EIDNFEVP 273
           +  ++ + + L +L L  N L  ++      SL+ L EL +            + + +  
Sbjct: 119 LPDTMQQFAGLETLTLARNPLR-ALP-ASIASLNRLRELSIRACPELTELPEPLASTDAS 176

Query: 274 QACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFP--- 330
               GL  L  L L   GIR    L  S+ +  +L +L +  +  +              
Sbjct: 177 GEHQGLVNLQSLRLEWTGIR---SLPASIANLQNLKSLKIRNSPLSA--------LGPAI 225

Query: 331 -HFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHL 389
            H   L+EL +         ++  I G     ++ L L +    +N  TL   +  L  L
Sbjct: 226 HHLPKLEELDLRGCT--ALRNYPPIFG-GRAPLKRLILKDC---SNLLTLPLDIHRLTQL 279

Query: 390 QELHMADNDLRGSLPWCLANMTSLRILDVSSNQL 423
           ++L +        LP  +A + +  I+ V  +  
Sbjct: 280 EKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  103 bits (259), Expect = 5e-24
 Identities = 49/340 (14%), Positives = 99/340 (29%), Gaps = 56/340 (16%)

Query: 658 NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPK 717
           + +    L  +G+  +      LS+         +    + +      N    +      
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIETRTG 65

Query: 718 NHIEG-PIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTF 776
             ++     LE         L++    +    P                           
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVPLP-QFPD------------------------QA 100

Query: 777 FNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLS 836
           F    L  + +    L   +PD +   + L  L LA N L   +P  +  LN+L+ L + 
Sbjct: 101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158

Query: 837 NNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSIT 896
                  +P    +T     +    +LQ     +  +        + +  S         
Sbjct: 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI--------RSLPASI-------- 202

Query: 897 YTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIE 956
                 + +L S L +  + L   + P I +L K++ L+L         P  F     ++
Sbjct: 203 ----ANLQNLKS-LKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256

Query: 957 SLDLS-YNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPE 995
            L L   + L   +P  +  L  L    +       ++P 
Sbjct: 257 RLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPS 295

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  102 bits (256), Expect = 1e-23
 Identities = 58/359 (16%), Positives = 109/359 (30%), Gaps = 52/359 (14%)

Query: 401 GSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNH 460
           GS      + +    L    +  +          L+  +    +D       S     N 
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDV----LSQWQRHYNADR--NRWHSAWRQANS 55

Query: 461 SRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRL 520
           +  +I       + A        T P     +L L         FP   +    L+++ +
Sbjct: 56  NNPQIETRTGRALKATADLLEDATQPG--RVALELR--SVPLPQFPDQAFRLSHLQHMTI 111

Query: 521 SHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLP--IHSHKQLRLLDVSKNNFQGHI 578
               +  E P+ + +    L  L+L  + L     LP  I S  +LR L +        +
Sbjct: 112 DAAGL-MELPDTM-QQFAGLETLTLARNPLR---ALPASIASLNRLRELSIRACPELTEL 166

Query: 579 PLEIGDI--------LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEH 630
           P  +           L  L    +    +  S+P+S  N+  L+ L + N+ L+  +   
Sbjct: 167 PEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPA 224

Query: 631 LAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLF 690
           +                          +L  L  L L G   +   P      + L+ L 
Sbjct: 225 IH-------------------------HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259

Query: 691 LSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLP 749
           L + S    +P  +  LT L  + +        +P    QL    I+ +  +  +    
Sbjct: 260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 90.8 bits (226), Expect = 8e-20
 Identities = 50/341 (14%), Positives = 99/341 (29%), Gaps = 47/341 (13%)

Query: 148 SLARLSSLTSLDLS-ANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLN 206
                S   +L    +  L+       L   +     +  R             R +  N
Sbjct: 7   HHHHSSGRENLYFQGSTALRP--YHDVLSQWQRHYNADRNRW--------HSAWRQANSN 56

Query: 207 NLKVFDLSGNLFNNSILSSLARLSS--LRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSY 264
           N ++   +G     +    L   +     +L L    L       +   LS+L+ + +  
Sbjct: 57  NPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFP-DQAFRLSHLQHMTIDA 113

Query: 265 NEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLL---QSMGSFPSLNTLDLSYNNFTET 321
             +   E+P        L  L L        + L     S+ S   L  L +        
Sbjct: 114 AGLM--ELPDTMQQFAGLETLTL------ARNPLRALPASIASLNRLRELSIRACPELTE 165

Query: 322 V------TTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNN 375
           +      T  +       +L+ L ++   I    S    I   + +++ L + N    + 
Sbjct: 166 LPEPLASTDASGEHQGLVNLQSLRLEWTGI---RSLPASIAN-LQNLKSLKIRN----SP 217

Query: 376 SRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHL 435
              L   +  L  L+EL +       + P        L+ L +     + ++    +  L
Sbjct: 218 LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD-IHRL 276

Query: 436 TSIEDLILSDNHF--QIPISLEPLFNHSRLKIFDAENNEIN 474
           T +E L L       ++P  +  L       I     +   
Sbjct: 277 TQLEKLDLRGCVNLSRLPSLIAQL---PANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 68.8 bits (169), Expect = 2e-12
 Identities = 38/199 (19%), Positives = 76/199 (38%), Gaps = 27/199 (13%)

Query: 100 FQQLESLDLRDNDIAGCVENEGL-ERLSRLSNLKMLNLVGN---------LFNNSILSSL 149
           F  LE+L L  N +        L   ++ L+ L+ L++            L +       
Sbjct: 126 FAGLETLTLARNPL------RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179

Query: 150 ARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLK 209
             L +L SL L    ++ S+    + +L++L+ L I  + +           +  L  L+
Sbjct: 180 QGLVNLQSLRLEWTGIR-SLP-ASIANLQNLKSLKIRNSPLSAL-----GPAIHHLPKLE 232

Query: 210 VFDLSGNLFNNSILSSLARLSSLRSLLLYD-NRLEGSIDVKEFDSLSNLEELDMSYNEID 268
             DL G     +        + L+ L+L D + L  ++   +   L+ LE+LD+     +
Sbjct: 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLP-LDIHRLTQLEKLDLRGCV-N 289

Query: 269 NFEVPQACSGLRKLSYLHL 287
              +P   + L     + +
Sbjct: 290 LSRLPSLIAQLPANCIILV 308

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 61.1 bits (149), Expect = 5e-10
 Identities = 32/178 (17%), Positives = 57/178 (32%), Gaps = 21/178 (11%)

Query: 101 QQLESLDLRDN--------DIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARL 152
            +L  L +R           +A     +       L NL+ L L       S+ +S+A L
Sbjct: 150 NRLRELSIRACPELTELPEPLAST---DASGEHQGLVNLQSLRLEWTGIR-SLPASIANL 205

Query: 153 SSLTSLDLSANRLKGSIDIKELDSLRDLEKLNI-GRNMIDKFVVSKGPKRLSRLNNLKVF 211
            +L SL +  + L        +  L  LE+L++ G   +  +     P        LK  
Sbjct: 206 QNLKSLKIRNSPLSALGP--AIHHLPKLEELDLRGCTALRNY-----PPIFGGRAPLKRL 258

Query: 212 DLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDN 269
            L       ++   + RL+ L  L L        +       L     + +  +    
Sbjct: 259 ILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP-SLIAQLPANCIILVPPHLQAQ 315

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  105 bits (265), Expect = 5e-25
 Identities = 58/265 (21%), Positives = 95/265 (35%), Gaps = 35/265 (13%)

Query: 584 DILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLT-GEIPEHLAMGCVSLRSLA 642
            I S  T   +  N L       F  +  L  L LS+N L+          G  SL+ L 
Sbjct: 25  GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84

Query: 643 LSNNNLEGHMFSRNF-NLTNLIWLQLEGNHFVGEIPQSL-SKCSSLQGLFLSNNSLSGKI 700
           LS N +     S NF  L  L  L  + ++       S+     +L  L +S+       
Sbjct: 85  LSFNGVI--TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142

Query: 701 PRWLGNLTVLRHIIMPKN-HIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQ 759
                 L+ L  + M  N   E  +P  F +LR L  LD+S   +               
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-------------- 188

Query: 760 VHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEG 818
                     QL    F +  +L +L++S+N+   ++       L+ L  L  + N++  
Sbjct: 189 ----------QLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIM- 236

Query: 819 EVPIQLCR--LNQLQLLDLSNNNLH 841
               Q  +   + L  L+L+ N+  
Sbjct: 237 TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  103 bits (258), Expect = 4e-24
 Identities = 60/246 (24%), Positives = 90/246 (36%), Gaps = 19/246 (7%)

Query: 614 QFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNN---LEGHMFSRNFNLTNLIWLQLEGN 670
             +  ++  LT  +P  +     S   L L +N    L   +F     LT L  L L  N
Sbjct: 10  TEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFD---KLTQLTKLSLSSN 62

Query: 671 H--FVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLE- 727
              F G   QS    +SL+ L LS N +   +      L  L H+    ++++       
Sbjct: 63  GLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 121

Query: 728 FCQLRILQILDISDNNISGSLPS--CYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMIL 785
           F  LR L  LDIS  +      +        +E + ++ N          F     L  L
Sbjct: 122 FLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180

Query: 786 DLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHI 844
           DLS   L   +     + LS L  L ++HNN           LN LQ+LD S N++    
Sbjct: 181 DLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 239

Query: 845 PSCFDN 850
                +
Sbjct: 240 KQELQH 245

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  100 bits (252), Expect = 2e-23
 Identities = 61/229 (26%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 92  LNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLAR 151
           L   +F    QL  L L  N ++   +    +     ++LK L+L  N    ++ S+   
Sbjct: 43  LPHGVFDKLTQLTKLSLSSNGLS--FKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLG 99

Query: 152 LSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVF 211
           L  L  LD   + LK   +     SLR+L  L+I                 + L++L+V 
Sbjct: 100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA----FNGIFNGLSSLEVL 155

Query: 212 DLSGNLFNNSILS-SLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNF 270
            ++GN F  + L      L +L  L L   +LE  +    F+SLS+L+ L+MS+N   + 
Sbjct: 156 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSL 214

Query: 271 EVPQACSGLRKLSYLHLLRVGIRDGSK-LLQSMGSFPSLNTLDLSYNNF 318
           +       L  L  L      I    K  LQ   S  SL  L+L+ N+F
Sbjct: 215 D-TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS--SLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 95.1 bits (237), Expect = 3e-21
 Identities = 55/249 (22%), Positives = 88/249 (35%), Gaps = 24/249 (9%)

Query: 100 FQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLA--RLSSLTS 157
                 L+L  N +             +L+ L  L+L  N  +     S +    +SL  
Sbjct: 27  PSSATRLELESNKLQSLPHGV----FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY 82

Query: 158 LDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNL 217
           LDLS N +  ++       L  LE L+   + + + +          L NL   D+S   
Sbjct: 83  LDLSFNGVI-TMS-SNFLGLEQLEHLDFQHSNLKQ-MSEFSV--FLSLRNLIYLDISHTH 137

Query: 218 FNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACS 277
              +       LSSL  L +  N  + +     F  L NL  LD+S  +++    P A +
Sbjct: 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS-PTAFN 196

Query: 278 GLRKLSYLHLLRVGIRDGSKLLQ-SMGSF---PSLNTLDLSYNNFTETVTTTTQGFPHFK 333
            L  L  L++        +         +    SL  LD S N+   +     Q FP   
Sbjct: 197 SLSSLQVLNM------SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP--S 248

Query: 334 SLKELYMDD 342
           SL  L +  
Sbjct: 249 SLAFLNLTQ 257

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 88.5 bits (220), Expect = 4e-19
 Identities = 57/293 (19%), Positives = 100/293 (34%), Gaps = 66/293 (22%)

Query: 681 SKCS-SLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDI 739
           S+CS S   +  ++  L+  +P  +   +    + +  N ++      F +L  L  L +
Sbjct: 3   SRCSCSGTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSL 59

Query: 740 SDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDR 799
           S N +S                             + F   +L  LDLS+N +   +   
Sbjct: 60  SSNGLS----------------------FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSN 96

Query: 800 VDGLSQLSYLILAHNNLEGEVPIQLCR-LNQLQLLDLSNNNLHGHIPSCFDN----TTLH 854
             GL QL +L   H+NL+      +   L  L  LD+S+ +        F+       L 
Sbjct: 97  FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 156

Query: 855 ERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSC 914
              N+       +                    F                  L+ LDLS 
Sbjct: 157 MAGNSFQENFLPDI-------------------FTELRN-------------LTFLDLSQ 184

Query: 915 NRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 966
            + +  + P    +L+ +Q LN+SHNN        +  L +++ LD S N + 
Sbjct: 185 CQ-LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 87.0 bits (216), Expect = 1e-18
 Identities = 54/276 (19%), Positives = 93/276 (33%), Gaps = 52/276 (18%)

Query: 757  IEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLN-GNIPDRV-DGLSQLSYLILAHN 814
              ++ L  N L   L  G F     L  L LS N L+      +   G + L YL L+ N
Sbjct: 30   ATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 815  NLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSC--FDN----TTLHERYNNGSSLQPFET 868
             +   +      L QL+ LD  ++NL   +     F +      L   + +         
Sbjct: 89   GVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFN--- 143

Query: 869  SFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQI-GN 927
                               F+  +              L  L ++ N    +  P I   
Sbjct: 144  -----------------GIFNGLSS-------------LEVLKMAGNSFQENFLPDIFTE 173

Query: 928  LTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYN 987
            L  +  L+LS   L    P+ F++L +++ L++S+N       +    LN+L V   + N
Sbjct: 174  LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233

Query: 988  NLSGKIPERAAQFATFNES----SYEGNPFLCGPPL 1019
            ++     ++      F  S    +   N F C    
Sbjct: 234  HIM-TSKKQE--LQHFPSSLAFLNLTQNDFACTCEH 266

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 84.7 bits (210), Expect = 7e-18
 Identities = 57/324 (17%), Positives = 106/324 (32%), Gaps = 76/324 (23%)

Query: 230 SSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEV-PQACSGLRKLSYLHLL 288
           SS   L L  N+L+ S+    FD L+ L +L +S N +       Q+  G          
Sbjct: 28  SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT--------- 77

Query: 289 RVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALN 348
                             SL  LDLS+N     V T +  F   + L+ L    + +   
Sbjct: 78  -----------------TSLKYLDLSFNG----VITMSSNFLGLEQLEHLDFQHSNL--- 113

Query: 349 TSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLA 408
                             +S  SV             L +L  L ++    R +      
Sbjct: 114 ----------------KQMSEFSV----------FLSLRNLIYLDISHTHTRVAFNGIFN 147

Query: 409 NMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDA 468
            ++SL +L ++ N    +        L ++  L LS    +  +S     + S L++ + 
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNM 206

Query: 469 ENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMN-- 526
            +N   +  +++         LQ L  S  +       +  +    L ++ L+    N  
Sbjct: 207 SHNNFFS--LDTFPY-KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ---NDF 260

Query: 527 ------EEFPNWLLENNTKLRQLS 544
                 + F  W+ +    L ++ 
Sbjct: 261 ACTCEHQSFLQWIKDQRQLLVEVE 284

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 76.2 bits (188), Expect = 6e-15
 Identities = 37/173 (21%), Positives = 75/173 (43%), Gaps = 9/173 (5%)

Query: 97  FTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLT 156
           F   +QLE LD + +++   +    +     L NL  L++       +       LSSL 
Sbjct: 97  FLGLEQLEHLDFQHSNL-KQMSEFSV--FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 153

Query: 157 SLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGN 216
            L ++ N  + +        LR+L  L++ +  +++      P   + L++L+V ++S N
Sbjct: 154 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL----SPTAFNSLSSLQVLNMSHN 209

Query: 217 LFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSL-SNLEELDMSYNEID 268
            F +        L+SL+ L    N +  +   +E     S+L  L+++ N+  
Sbjct: 210 NFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 73.5 bits (181), Expect = 4e-14
 Identities = 40/220 (18%), Positives = 76/220 (34%), Gaps = 13/220 (5%)

Query: 506 PKFLYNQHDLEYVRLSHIKMNE-EFPNWLLENNTKLRQLSLVNDSLVGPFRLP--IHSHK 562
                    L  + LS   ++     +      T L+ L L  + ++    +       +
Sbjct: 45  HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI---TMSSNFLGLE 101

Query: 563 QLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQ 622
           QL  LD   +N +      +   L  L   +IS      +    F  ++ L+ L ++ N 
Sbjct: 102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 161

Query: 623 LTGEIPEHLAMGCVSLRSLALSNNNL---EGHMFSRNFNLTNLIWLQLEGNHFVGEIPQS 679
                   +     +L  L LS   L       F+   +L++L  L +  N+F       
Sbjct: 162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN---SLSSLQVLNMSHNNFFSLDTFP 218

Query: 680 LSKCSSLQGLFLSNNSLSGKIPRWLGNL-TVLRHIIMPKN 718
               +SLQ L  S N +     + L +  + L  + + +N
Sbjct: 219 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 72.4 bits (178), Expect = 1e-13
 Identities = 45/247 (18%), Positives = 81/247 (32%), Gaps = 20/247 (8%)

Query: 303 GSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGES---M 359
           G   S   L+L  N            F     L +L +    +    SF     +S    
Sbjct: 25  GIPSSATRLELESNKLQSLPHGV---FDKLTQLTKLSLSSNGL----SFKGCCSQSDFGT 77

Query: 360 PSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCL-ANMTSLRILDV 418
            S++YL LS     N   T+      L  L+ L    ++L+    + +  ++ +L  LD+
Sbjct: 78  TSLKYLDLSF----NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 133

Query: 419 SSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEII 478
           S         +     L+S+E L ++ N FQ     +       L   D    ++    +
Sbjct: 134 SHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ--L 190

Query: 479 ESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNT 538
              +       LQ L +S      +         + L+ +  S   +       L    +
Sbjct: 191 SPTAF-NSLSSLQVLNMSHNNFFSLD-TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 248

Query: 539 KLRQLSL 545
            L  L+L
Sbjct: 249 SLAFLNL 255

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 36/222 (16%), Positives = 67/222 (30%), Gaps = 48/222 (21%)

Query: 785 LDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNL-HGH 843
           +  +   L  ++P  +   S  + L L  N L+        +L QL  L LS+N L    
Sbjct: 12  IRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68

Query: 844 IPS-CFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYT 898
             S           L   +N   ++                       +F    +     
Sbjct: 69  CCSQSDFGTTSLKYLDLSFNGVITMS---------------------SNFLGLEQ----- 102

Query: 899 YQGRVPSLLSGLDLSCNRLIGHIPPQ--IGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIE 956
                   L  LD   +  +  +       +L  +  L++SH +        F+ L ++E
Sbjct: 103 --------LEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 153

Query: 957 SLDLSYNKLSWKIPYQ-LVELNTLAVFSVAYNNLSGKIPERA 997
            L ++ N            EL  L    ++   L  ++   A
Sbjct: 154 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTA 194

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 48.1 bits (115), Expect = 9e-06
 Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 6/102 (5%)

Query: 91  YLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLA 150
                +FT  + L  LDL    +   +        + LS+L++LN+  N F +       
Sbjct: 165 NFLPDIFTELRNLTFLDLSQCQLEQ-LSPTA---FNSLSSLQVLNMSHNNFFSLDTFPYK 220

Query: 151 RLSSLTSLDLSANRLKGSIDIKELDSLRD-LEKLNIGRNMID 191
            L+SL  LD S N +  +   +EL      L  LN+ +N   
Sbjct: 221 CLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.4 bits (108), Expect = 6e-05
 Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 5/86 (5%)

Query: 908 SGLDLSCNRL-IGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 966
           SG ++ CN   +  +P  I   +    L L  N L       F  L  +  L LS N LS
Sbjct: 8   SGTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS 65

Query: 967 WK--IPYQLVELNTLAVFSVAYNNLS 990
           +K           +L    +++N + 
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFNGVI 91

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  106 bits (266), Expect = 6e-25
 Identities = 54/291 (18%), Positives = 100/291 (34%), Gaps = 30/291 (10%)

Query: 563 QLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQ 622
            LR++  S    +  +P    D+     + ++  N +       F N+  L  L L NN+
Sbjct: 32  HLRVVQCSDLGLE-KVP---KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 87

Query: 623 LTGEIPEHLAMGCVSLRSLALSNNNLE---GHMFSRNFNLTNLIWLQLEGNHFVGEIPQS 679
           ++ +I        V L  L LS N L+     M         L  L++  N         
Sbjct: 88  IS-KISPGAFAPLVKLERLYLSKNQLKELPEKMPK------TLQELRVHENEITKVRKSV 140

Query: 680 LSKCSSLQGLFLSNNSLSGKI--PRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQIL 737
            +  + +  + L  N L            +  L +I +   +I   IP        L  L
Sbjct: 141 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTEL 197

Query: 738 DISDNNISGSLPSCY--DFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGN 795
            +  N I+  + +        + ++ LS N +   +  G+  N   L  L L+ N L   
Sbjct: 198 HLDGNKIT-KVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-K 254

Query: 796 IPDRVDGLSQLSYLILAHNNLEG------EVPIQLCRLNQLQLLDLSNNNL 840
           +P  +     +  + L +NN+          P    +      + L +N +
Sbjct: 255 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  104 bits (261), Expect = 2e-24
 Identities = 68/366 (18%), Positives = 111/366 (30%), Gaps = 80/366 (21%)

Query: 612 FLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNN---LEGHMFSRNFNLTNLIWLQLE 668
            L+ +  S+  L  ++P+ L         L L NN    ++   F    NL NL  L L 
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFK---NLKNLHTLILI 84

Query: 669 GNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEF 728
            N      P + +    L+ L+LS N L     +    L  LR   + +N I       F
Sbjct: 85  NNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELR---VHENEITKVRKSVF 141

Query: 729 CQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLS 788
             L  + ++++  N +  S                       ++ G F     L  + ++
Sbjct: 142 NGLNQMIVVELGTNPLKSS----------------------GIENGAFQGMKKLSYIRIA 179

Query: 789 YNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCF 848
             ++   IP  +     L+ L L  N +       L  LN L  L LS N++        
Sbjct: 180 DTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236

Query: 849 DN-TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLL 907
            N   L E + N + L                                           +
Sbjct: 237 ANTPHLRELHLNNNKLVKVPGGLADH-------------------------------KYI 265

Query: 908 SGLDLSCNRLIGHIPPQ-------IGNLTKIQTLNLSHNNL-AGPI-PSTFSNLRNIESL 958
             + L  N  I  I                   ++L  N +    I PSTF  +    ++
Sbjct: 266 QVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV 324

Query: 959 DLSYNK 964
            L   K
Sbjct: 325 QLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 98.9 bits (247), Expect = 2e-22
 Identities = 60/309 (19%), Positives = 114/309 (36%), Gaps = 55/309 (17%)

Query: 675 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRIL 734
           ++P+ L        L L NN ++        NL  L  +I+  N I    P  F  L  L
Sbjct: 45  KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102

Query: 735 QILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHL-N 793
           + L +S N +   LP       ++++ + +N +  ++++  F     +++++L  N L +
Sbjct: 103 ERLYLSKNQLK-ELPE-KMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKS 159

Query: 794 GNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN-- 850
             I +    G+ +LSY+ +A  N+   +P  L     L  L L  N +     +      
Sbjct: 160 SGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLN 216

Query: 851 --TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLS 908
               L   +N+ S++                       S   T               L 
Sbjct: 217 NLAKLGLSFNSISAVDN--------------------GSLANTPH-------------LR 243

Query: 909 GLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNL------AGPIPSTFSNLRNIESLDLSY 962
            L L+ N+L+  +P  + +   IQ + L +NN+          P   +   +   + L  
Sbjct: 244 ELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 302

Query: 963 NKLS-WKIP 970
           N +  W+I 
Sbjct: 303 NPVQYWEIQ 311

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 92.0 bits (229), Expect = 4e-20
 Identities = 55/316 (17%), Positives = 101/316 (31%), Gaps = 53/316 (16%)

Query: 62  CQWERVSCN---------NTMGRVVVLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDND 112
           C    V C+         +      +LDL      E   +    F   + L +L L +N 
Sbjct: 31  CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITE---IKDGDFKNLKNLHTLILINNK 87

Query: 113 IAGCVENEGLERLSRLSNLKMLNLVGN-----------------LFNNSILS----SLAR 151
           I+           + L  L+ L L  N                 +  N I          
Sbjct: 88  ISKISPGA----FAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNG 143

Query: 152 LSSLTSLDLSANRLKGS-IDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKV 210
           L+ +  ++L  N LK S I+      ++ L  + I    I        P+ L    +L  
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI-----PQGL--PPSLTE 196

Query: 211 FDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNF 270
             L GN       +SL  L++L  L L  N +  ++D     +  +L EL ++ N++   
Sbjct: 197 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-- 253

Query: 271 EVPQACSGLRKLSYLHL----LRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTT 326
           +VP   +  + +  ++L    +     +            S + + L  N          
Sbjct: 254 KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW-EIQP 312

Query: 327 QGFPHFKSLKELYMDD 342
             F        + + +
Sbjct: 313 STFRCVYVRAAVQLGN 328

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 89.3 bits (222), Expect = 3e-19
 Identities = 62/353 (17%), Positives = 122/353 (34%), Gaps = 84/353 (23%)

Query: 153 SSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFD 212
                LDL  N++   I   +  +L++L  L +  N I K      P   + L  L+   
Sbjct: 52  PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKI----SPGAFAPLVKLERLY 106

Query: 213 LSGNLFNNSILSSLAR--LSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNF 270
           LS N      L  L      +L+ L +++N +   +    F+ L+ +  +++  N + + 
Sbjct: 107 LSKNQ-----LKELPEKMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSS 160

Query: 271 EVP-QACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGF 329
            +   A  G++KLSY+                           ++  N T T+       
Sbjct: 161 GIENGAFQGMKKLSYI--------------------------RIADTNIT-TIPQGL--- 190

Query: 330 PHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHL 389
               SL EL++D  +I                +   SL                  L +L
Sbjct: 191 --PPSLTELHLDGNKIT--------------KVDAASLKG----------------LNNL 218

Query: 390 QELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQ 449
            +L ++ N +       LAN   LR L +++N+L+  +    L     I+ + L +N+  
Sbjct: 219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG-LADHKYIQVVYLHNNNIS 276

Query: 450 -IPIS----LEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSS 497
            I  +           +        +N +    I+  +     +   ++ L +
Sbjct: 277 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF-RCVYVRAAVQLGN 328

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 83.9 bits (208), Expect = 2e-17
 Identities = 56/240 (23%), Positives = 93/240 (38%), Gaps = 23/240 (9%)

Query: 757 IEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNN 815
              + L  N +  ++K+G F N   L  L L  N ++  I       L +L  L L+ N 
Sbjct: 54  TALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQ 111

Query: 816 LEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN----TTLHERYNNGSSLQPFETSFV 871
           L+ E+P ++     LQ L +  N +     S F+       +    N   S      +F 
Sbjct: 112 LK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168

Query: 872 IMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQI-GNLTK 930
            M           L        +IT      +P  L+ L L  N+ I  +       L  
Sbjct: 169 GMKK---------LSYIRIADTNITTI-PQGLPPSLTELHLDGNK-ITKVDAASLKGLNN 217

Query: 931 IQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLS 990
           +  L LS N+++     + +N  ++  L L+ NKL  K+P  L +   + V  +  NN+S
Sbjct: 218 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 78.5 bits (194), Expect = 1e-15
 Identities = 64/347 (18%), Positives = 117/347 (33%), Gaps = 73/347 (21%)

Query: 305 FPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQY 364
            P    LDL  N  TE        F + K+L  L + + +I   +         +  ++ 
Sbjct: 51  PPDTALLDLQNNKITEI---KDGDFKNLKNLHTLILINNKI---SKISPGAFAPLVKLER 104

Query: 365 LSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQL- 423
           L LS     N  + L + +     LQEL + +N++          +  + ++++ +N L 
Sbjct: 105 LYLSK----NQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158

Query: 424 IGSISSSPLIHLTSIEDLILSDNHFQ-IPISLEPLFNHSRLKIFDAENNEINAEIIESHS 482
              I +     +  +  + ++D +   IP  L        L     + N+I    +++ S
Sbjct: 159 SSGIENGAFQGMKKLSYIRIADTNITTIPQGL---P--PSLTELHLDGNKI--TKVDAAS 211

Query: 483 LTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQ 542
           L      L  L LS             +N        +S +       N  L N   LR+
Sbjct: 212 LK-GLNNLAKLGLS-------------FNS-------ISAV------DNGSLANTPHLRE 244

Query: 543 LSLVNDSLVGPFRLP--IHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALD 600
           L L N+ LV   ++P  +  HK ++++ +  NN                    I  N   
Sbjct: 245 LHLNNNKLV---KVPGGLADHKYIQVVYLHNNNIS-----------------AIGSNDFC 284

Query: 601 GSIPSSFGNMNFLQFLDLSNNQLT-GEIPEHLAMGCVSLRSLALSNN 646
              P           + L +N +   EI            ++ L N 
Sbjct: 285 P--PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 72.7 bits (179), Expect = 8e-14
 Identities = 34/202 (16%), Positives = 66/202 (32%), Gaps = 36/202 (17%)

Query: 92  LNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGN------------ 139
           +  S+F    Q+  ++L  N +       G      +  L  + +               
Sbjct: 136 VRKSVFNGLNQMIVVELGTNPLKSSGIENGA--FQGMKKLSYIRIADTNITTIPQGLPPS 193

Query: 140 -----LFNNSILS----SLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMI 190
                L  N I      SL  L++L  L LS N +  ++D   L +   L +L++  N +
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKL 252

Query: 191 DKFVVSKGPKRLSRLNNLKVFDLSGNLFNN------SILSSLARLSSLRSLLLYDNRLE- 243
            K      P  L+    ++V  L  N  +              + +S   + L+ N ++ 
Sbjct: 253 VKV-----PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307

Query: 244 GSIDVKEFDSLSNLEELDMSYN 265
             I    F  +     + +   
Sbjct: 308 WEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 62.3 bits (152), Expect = 2e-10
 Identities = 27/146 (18%), Positives = 47/146 (32%), Gaps = 10/146 (6%)

Query: 100 FQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLD 159
              L  L L  N I           L  L+NL  L L  N  +     SLA    L  L 
Sbjct: 191 PPSLTELHLDGNKI----TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH 246

Query: 160 LSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVS--KGPKRLSRLNNLKVFDLSGNL 217
           L+ N+L   +    L   + ++ + +  N I     +    P   ++  +     L  N 
Sbjct: 247 LNNNKLV-KVP-GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304

Query: 218 FNNSILSSLA--RLSSLRSLLLYDNR 241
                +       +    ++ L + +
Sbjct: 305 VQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 51.9 bits (125), Expect = 5e-07
 Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 6/96 (6%)

Query: 903 VPSLLSGLDLSCNRLIGHIPP-QIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLS 961
           +P   + LDL  N+ I  I      NL  + TL L +N ++   P  F+ L  +E L LS
Sbjct: 50  LPPDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108

Query: 962 YNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERA 997
            N+L  ++P ++    TL    V  N ++ K+ +  
Sbjct: 109 KNQLK-ELPEKM--PKTLQELRVHENEIT-KVRKSV 140

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 38/174 (21%), Positives = 56/174 (32%), Gaps = 43/174 (24%)

Query: 830 LQLLDLSNNNLHGHIPSCFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQIL 885
             LLDL NN +       F N     TL    N  S + P                    
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP-------------------- 93

Query: 886 ESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPI 945
            +F    K             L  L LS N+L   +P        +Q L +  N +    
Sbjct: 94  GAFAPLVK-------------LERLYLSKNQL-KELPE--KMPKTLQELRVHENEITKVR 137

Query: 946 PSTFSNLRNIESLDLSYNKL-SWKIPYQ-LVELNTLAVFSVAYNNLSGKIPERA 997
            S F+ L  +  ++L  N L S  I       +  L+   +A  N++  IP+  
Sbjct: 138 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL 190

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  108 bits (270), Expect = 2e-24
 Identities = 88/498 (17%), Positives = 159/498 (31%), Gaps = 79/498 (15%)

Query: 358 SMPSIQYLSLSNSSVSNNSRTLDQGLC-PLVHLQELHMADNDLRGSLPWCLANMTSLRIL 416
            +  ++ L LS+    N  R+LD  +      L+ L ++ N L+ ++      M SLR L
Sbjct: 74  FLSELRVLRLSH----NRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISC--CPMASLRHL 126

Query: 417 DVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPL-FNHSRLKIFDAENNEINA 475
           D+S N            +LT +  L LS   F+    L+ L   H  L     +    + 
Sbjct: 127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR---QLDLLPVAHLHLSCILLDLVSYHI 183

Query: 476 EIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLE 535
           +  E+ SL  PN  +  L+        +     +     L+   +     N +     L 
Sbjct: 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLS 243

Query: 536 N---NTKLRQLSLVNDSLVGPFRLPIHS---HKQLRLLDVSKNNFQGHIPLEIGDI---- 585
                  L  ++L +        + +      + +  L++        I  E        
Sbjct: 244 ELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETA 303

Query: 586 LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSN 645
           L  L + ++       S  + +     +    LS +     I         S   L  + 
Sbjct: 304 LKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP-FIHMVCPPSPSSFTFLNFTQ 362

Query: 646 NNLEGHMFSRNF-NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWL 704
           N        +    L  L  L L+ N       ++  K + +                  
Sbjct: 363 NVFT-DSVFQGCSTLKRLQTLILQRNGL-----KNFFKVALM-----------------T 399

Query: 705 GNLTVLRHIIMPKNHIE-GPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLS 763
            N++ L  + +  N +              + +L++S N ++GS+               
Sbjct: 400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV--------------- 444

Query: 764 KNMLHGQLKEGTFFNCLT--LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVP 821
                        F CL   + +LDL  N +  +IP  V  L  L  L +A N L+    
Sbjct: 445 -------------FRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPD 490

Query: 822 IQLCRLNQLQLLDLSNNN 839
               RL  LQ + L +N 
Sbjct: 491 GVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  105 bits (263), Expect = 2e-23
 Identities = 76/428 (17%), Positives = 154/428 (35%), Gaps = 34/428 (7%)

Query: 558 IHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLD 617
           I    +LR+L +S N  +  +   +      L   ++S N L  +I      M  L+ LD
Sbjct: 72  ISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRL-QNIS--CCPMASLRHLD 127

Query: 618 LSNNQLTGEIPEHLAMGC-VSLRSLALSNNNLEGHMFSRNFNL-TNLIWLQLEGNHFVGE 675
           LS N     +P     G    L  L LS             +L  + I L L   H  G 
Sbjct: 128 LSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGG 186

Query: 676 IPQSLS--KCSSLQGLFLSNNSLSGKIPRWLGNLTVL--RHIIMPKNHIEGPIPLEFCQL 731
             +SL     + L  +F  N+  S ++   +  L  L   +I +   + +  +       
Sbjct: 187 ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELT 246

Query: 732 RILQILDISDNNISGSLPSCYDFV------CIEQVHLSKNMLHGQLKEGTFFNCLT---- 781
           R   +L+++  +I  +               +E +++    +  ++    F    T    
Sbjct: 247 RGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKS 306

Query: 782 LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH 841
           LMI  +       +        ++++  +L+ ++      +     +    L+ + N   
Sbjct: 307 LMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT 366

Query: 842 GHIPSCFDNTT-LHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQ 900
             +         L       + L+ F    ++   M        LE+ D +  S+     
Sbjct: 367 DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNM------SSLETLDVSLNSLNSHAY 420

Query: 901 GRV---PSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIES 957
            R       +  L+LS N L G +   +    K++ L+L +N +   IP   ++L+ ++ 
Sbjct: 421 DRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIMS-IPKDVTHLQALQE 477

Query: 958 LDLSYNKL 965
           L+++ N+L
Sbjct: 478 LNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  101 bits (252), Expect = 3e-22
 Identities = 85/531 (16%), Positives = 165/531 (31%), Gaps = 84/531 (15%)

Query: 153 SSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFD 212
               +L LS N +   + + ++  L +L  L +  N I                +L+  D
Sbjct: 52  PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHV----FLFNQDLEYLD 106

Query: 213 LSGNLFNNSILSSL--ARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNF 270
           +S N      L ++    ++SLR L L  N  +     KEF +L+ L  L +S  +    
Sbjct: 107 VSHNR-----LQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL 161

Query: 271 EVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFP 330
           ++            L L+   I+ G      + +   L+ L    N+        +    
Sbjct: 162 DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLH-LVFHPNSLFSVQVNMSVNAL 220

Query: 331 HFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQ 390
               L  + ++D       +FL  +    P++  ++L +   +               ++
Sbjct: 221 GHLQLSNIKLNDENCQRLMTFLSEL-TRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVE 279

Query: 391 ELHMADNDLRGSLPW-----CLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSD 445
            L++ +  +   +           + SL I  V +   +     +       +   +LS 
Sbjct: 280 YLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFL-FSKEALYSVFAEMNIKMLSI 338

Query: 446 NHFQIPISLEPLFNH-SRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGIT 504
           +    P          S     +   N                               + 
Sbjct: 339 S--DTPFIHMVCPPSPSSFTFLNFTQN-----------------VFTDS--VFQGCSTLK 377

Query: 505 FPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQL 564
             + L  Q                           L+    V             +   L
Sbjct: 378 RLQTLILQ------------------------RNGLKNFFKVALMTK--------NMSSL 405

Query: 565 RLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLT 624
             LDVS N+   H           + V N+S N L GS+         ++ LDL NN++ 
Sbjct: 406 ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK--VKVLDLHNNRIM 463

Query: 625 GEIPEHLAMGCVSLRSLALSNNNLE---GHMFSRNFNLTNLIWLQLEGNHF 672
             IP+ +     +L+ L +++N L+     +F     LT+L ++ L  N +
Sbjct: 464 -SIPKDV-THLQALQELNVASNQLKSVPDGVFD---RLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 85.7 bits (212), Expect = 3e-17
 Identities = 70/421 (16%), Positives = 142/421 (33%), Gaps = 40/421 (9%)

Query: 584 DILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLAL 643
           D+  R    ++S N++          ++ L+ L LS+N++   +  H+ +    L  L +
Sbjct: 49  DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDV 107

Query: 644 SNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQS--LSKCSSLQGLFLSNNSLSGKIP 701
           S+N L+         + +L  L L  N F   +P        + L  L LS         
Sbjct: 108 SHNRLQNISCC---PMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDL 163

Query: 702 RWLGNLTVLRHII-MPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQV 760
             + +L +   ++ +   HI+G             +  +   N   S+        +  +
Sbjct: 164 LPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHL 223

Query: 761 HLSKNML----HGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGL-----SQLSYLIL 811
            LS   L      +L            +L+++  H+       V          + YL +
Sbjct: 224 QLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283

Query: 812 AHNNLEGEVP-----IQLCRLNQLQLLDLSNNNLHGHIPSCFDN-TTLHERYNNGSSLQP 865
            +  +   +           L  L +  + N        + +     ++ +  + S    
Sbjct: 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343

Query: 866 FETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSL--LSGLDLSCNRL--IGHI 921
                     M   P        +FT    T +      +L  L  L L  N L     +
Sbjct: 344 IH--------MVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKV 395

Query: 922 PPQIGNLTKIQTLNLSHNNL-AGPIPSTFSNLRNIESLDLSYNKLS----WKIPYQLVEL 976
                N++ ++TL++S N+L +     T +   +I  L+LS N L+      +P ++  L
Sbjct: 396 ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVL 455

Query: 977 N 977
           +
Sbjct: 456 D 456

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 84.5 bits (209), Expect = 7e-17
 Identities = 87/585 (14%), Positives = 177/585 (30%), Gaps = 140/585 (23%)

Query: 92  LNASLFTPFQQLESLDLRDNDIAGCVENEGLER--LSRLSNLKMLNLVGNLFNNSILSSL 149
           L     +   +L  L L  N I        L+        +L+ L++  N      L ++
Sbjct: 67  LRMPDISFLSELRVLRLSHNRI------RSLDFHVFLFNQDLEYLDVSHNR-----LQNI 115

Query: 150 --ARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNN 207
               ++SL  LDLS N        KE  +L  L  L +      +         L  + +
Sbjct: 116 SCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-------DLLPVAH 168

Query: 208 LKVFDLSGNLFNNSI-----LSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDM 262
           L +  +  +L +  I      S     +++  L+ + N L     V+   S++ L  L  
Sbjct: 169 LHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSL---FSVQVNMSVNALGHL-- 223

Query: 263 SYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETV 322
                             +LS + L     +     L  +   P+L  + L +   T   
Sbjct: 224 ------------------QLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC 265

Query: 323 TTTTQGFPHFKSLKELYMDDARIA--LNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLD 380
           +     F   + ++ L + +  I   ++         ++ S+    + N     +   L 
Sbjct: 266 SVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALY 325

Query: 381 QGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIED 440
                   +    ++ +D       C  + +S   L+ + N             L  ++ 
Sbjct: 326 SV---FAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT-DSVFQGCSTLKRLQT 381

Query: 441 LILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYR 500
           LIL  N  +   +   +   ++                   SL T +  L SL       
Sbjct: 382 LILQRNGLK---NFFKVALMTK----------------NMSSLETLDVSLNSL------- 415

Query: 501 DGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHS 560
           +   + +       +  + LS   +                    V   L          
Sbjct: 416 NSHAYDRTCAWAESILVLNLSSNMLT-----------------GSVFRCLP--------- 449

Query: 561 HKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSN 620
             ++++LD+  N                             SIP    ++  LQ L++++
Sbjct: 450 -PKVKVLDLHNNRIM--------------------------SIPKDVTHLQALQELNVAS 482

Query: 621 NQLTGEIPEHLAMGCVSLRSLALSNNN----LEGHMFSRNFNLTN 661
           NQL   +P+ +     SL+ + L +N       G  +   +   +
Sbjct: 483 NQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKH 526

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 81.1 bits (200), Expect = 8e-16
 Identities = 59/412 (14%), Positives = 123/412 (29%), Gaps = 33/412 (8%)

Query: 615  FLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNN---LEGHMFSRNFNLTNLIWLQLEGNH 671
             +D SN  LT  +P+ L       ++L+LS N+   L     S    L+ L  L+L  N 
Sbjct: 35   MVDYSNRNLT-HVPKDL---PPRTKALSLSQNSISELRMPDISF---LSELRVLRLSHNR 87

Query: 672  FVGEIPQSL-SKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEG-PIPLEFC 729
                +   +      L+ L +S+N L   I      +  LRH+ +  N  +  P+  EF 
Sbjct: 88   I-RSLDFHVFLFNQDLEYLDVSHNRLQ-NISC--CPMASLRHLDLSFNDFDVLPVCKEFG 143

Query: 730  QLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSY 789
             L  L  L +S              + +  + L     H +  E          +L L +
Sbjct: 144  NLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF 203

Query: 790  NHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFD 849
            +  +         ++ L +L L++  L  E   +L           +  N+         
Sbjct: 204  HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263

Query: 850  NTTLH-ERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLS 908
              ++   ++     ++      + +        +   E F ++  ++           L 
Sbjct: 264  KCSVKLFQFFWPRPVEYLNIYNLTITE------RIDREEFTYSETALKS---------LM 308

Query: 909  GLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWK 968
               +     +           ++    LS ++          +  +   L+ + N  +  
Sbjct: 309  IEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDS 368

Query: 969  IPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLP 1020
            +      L  L    +  N L     + A      +                
Sbjct: 369  VFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHA 419

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 62.2 bits (151), Expect = 7e-10
 Identities = 47/262 (17%), Positives = 87/262 (33%), Gaps = 49/262 (18%)

Query: 63  QWERVSCNNTMGRVVVLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDI----AGCVE 118
           + +R     +   +  L +       + +   +L++ F ++    L  +D       C  
Sbjct: 291 RIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC-- 348

Query: 119 NEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLR 178
                     S+   LN   N+F +S+    + L  L +L L  N LK            
Sbjct: 349 ------PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK------------ 390

Query: 179 DLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARL-SSLRSLLL 237
                             K       +++L+  D+S N  N+           S+  L L
Sbjct: 391 ---------------NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNL 435

Query: 238 YDNRLEGSIDVKEFDSL-SNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGS 296
             N L GS+    F  L   ++ LD+  N I    +P+  + L+ L  L++    ++   
Sbjct: 436 SSNMLTGSV----FRCLPPKVKVLDLHNNRIM--SIPKDVTHLQALQELNVASNQLKSVP 489

Query: 297 KLLQSMGSFPSLNTLDLSYNNF 318
                     SL  + L  N +
Sbjct: 490 D--GVFDRLTSLQYIWLHDNPW 509

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  105 bits (263), Expect = 9e-24
 Identities = 60/284 (21%), Positives = 102/284 (35%), Gaps = 40/284 (14%)

Query: 563 QLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQ 622
           Q   +  ++      +P     I S     N+  N +      +F +++ L+ L L  N 
Sbjct: 55  QFSKVVCTRRGLS-EVP---QGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 623 LTGEIPEHLAMGCVSLRSLALSNNNL---EGHMFSRNFNLTNLIWLQLEGNHFVGEIPQS 679
           +  +I      G  SL +L L +N L       F     L+ L  L L  N        +
Sbjct: 111 IR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFE---YLSKLRELWLRNNPIESIPSYA 166

Query: 680 LSKCSSLQGLFLS-NNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILD 738
            ++  SL  L L     L          L  L+++ +   +I+  +P     L  L+ L+
Sbjct: 167 FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELE 224

Query: 739 ISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPD 798
           +S N+                          +++ G+F    +L  L +  + ++  I  
Sbjct: 225 MSGNHFP------------------------EIRPGSFHGLSSLKKLWVMNSQVS-LIER 259

Query: 799 RV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH 841
              DGL+ L  L LAHNNL          L  L  L L +N  +
Sbjct: 260 NAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 96.0 bits (239), Expect = 8e-21
 Identities = 59/277 (21%), Positives = 96/277 (34%), Gaps = 46/277 (16%)

Query: 62  CQWE--RVSCNNTM---------GRVVVLDLSQTHRGEYWYLNASLFTPFQQLESLDLRD 110
           C  +  +V C                  L+L + +      + A  F     LE L L  
Sbjct: 52  CSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQM---IQADTFRHLHHLEVLQLGR 108

Query: 111 NDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILS----SLARLSSLTSLDLSANRLK 166
           N I   +E      L+ L+ L        LF+N +      +   LS L  L L  N ++
Sbjct: 109 NSIR-QIEVGAFNGLASLNTL-------ELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE 160

Query: 167 GSIDIKELDSLRDLEKLNIGR-NMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSS 225
            SI     + +  L +L++G    ++             L NLK  +L      +  + +
Sbjct: 161 -SIPSYAFNRVPSLMRLDLGELKKLEYI----SEGAFEGLFNLKYLNLGMCNIKD--MPN 213

Query: 226 LARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYL 285
           L  L  L  L +  N     I    F  LS+L++L +  +++   E   A  GL  L  L
Sbjct: 214 LTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIE-RNAFDGLASLVEL 271

Query: 286 HLLRVGIRDGSKL----LQSMGSFPSLNTLDLSYNNF 318
           +L        + L             L  L L +N +
Sbjct: 272 NL------AHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 91.3 bits (227), Expect = 2e-19
 Identities = 65/291 (22%), Positives = 114/291 (39%), Gaps = 58/291 (19%)

Query: 129 SNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRN 188
           SN + LNL+ N        +   L  L  L L  N ++  I++   + L  L  L +  N
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDN 133

Query: 189 MIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYD-NRLEGSID 247
            +              L+ L+   L  N   +    +  R+ SL  L L +  +LE  I 
Sbjct: 134 WLTVI----PSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE-YIS 188

Query: 248 VKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPS 307
              F+ L NL+ L++    I +                             + ++     
Sbjct: 189 EGAFEGLFNLKYLNLGMCNIKD-----------------------------MPNLTPLVG 219

Query: 308 LNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIAL--NTSFLQIIGESMPSIQYL 365
           L  L++S N+F E    +   F    SLK+L++ +++++L    +F     + + S+  L
Sbjct: 220 LEELEMSGNHFPEIRPGS---FHGLSSLKKLWVMNSQVSLIERNAF-----DGLASLVEL 271

Query: 366 SLSNSSVSNNSRTLDQGLC-PLVHLQELHMADNDLRGSLPW-CLANMTSLR 414
           +L++    NN  +L   L  PL +L ELH+  N      PW C  ++  L 
Sbjct: 272 NLAH----NNLSSLPHDLFTPLRYLVELHLHHN------PWNCDCDILWLA 312

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 89.8 bits (223), Expect = 8e-19
 Identities = 60/276 (21%), Positives = 101/276 (36%), Gaps = 50/276 (18%)

Query: 675 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRIL 734
           E+PQ +   S+ + L L  N++         +L  L  + + +N I       F  L  L
Sbjct: 68  EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASL 125

Query: 735 QILDISDNNISGSLPSC--YDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLS-YNH 791
             L++ DN ++  +PS        + ++ L  N +   +    F    +LM LDL     
Sbjct: 126 NTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKK 183

Query: 792 LNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN 850
           L   I +   +GL  L YL L   N++ ++P  L  L  L+ L++S N+     P  F  
Sbjct: 184 LE-YISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHG 240

Query: 851 ----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSL 906
                 L    +  S ++                      +FD                 
Sbjct: 241 LSSLKKLWVMNSQVSLIER--------------------NAFDGLAS------------- 267

Query: 907 LSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNL 941
           L  L+L+ N L   +P  +   L  +  L+L HN  
Sbjct: 268 LVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 82.1 bits (203), Expect = 2e-16
 Identities = 52/267 (19%), Positives = 94/267 (35%), Gaps = 47/267 (17%)

Query: 757  IEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNN 815
               ++L +N +   ++  TF +   L +L L  N +   I     +GL+ L+ L L  N 
Sbjct: 77   TRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNW 134

Query: 816  LEGEVPIQLCRLNQLQLLDLSNNNLHGHIPS-CFDN----TTLH-ERYNNGSSLQPFETS 869
            L          L++L+ L L NN +   IPS  F+       L          +      
Sbjct: 135  LTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISE---- 189

Query: 870  FVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLT 929
                             +F+                 L  L+L    +     P +  L 
Sbjct: 190  ----------------GAFEGLFN-------------LKYLNLGMCNI--KDMPNLTPLV 218

Query: 930  KIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNL 989
             ++ L +S N+     P +F  L +++ L +  +++S         L +L   ++A+NNL
Sbjct: 219  GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL 278

Query: 990  SGKIPERAAQFATFNES-SYEGNPFLC 1015
            S  +P        +        NP+ C
Sbjct: 279  S-SLPHDLFTPLRYLVELHLHHNPWNC 304

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 75.2 bits (185), Expect = 4e-14
 Identities = 46/250 (18%), Positives = 83/250 (33%), Gaps = 23/250 (9%)

Query: 305 FPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIAL--NTSFLQIIGESMPSI 362
             +   L+L  NN       T   F H   L+ L +    I      +F       + S+
Sbjct: 74  PSNTRYLNLMENNIQMIQADT---FRHLHHLEVLQLGRNSIRQIEVGAF-----NGLASL 125

Query: 363 QYLSLSNSSVSNNSRTLDQG-LCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSN 421
             L L +    N    +  G    L  L+EL + +N +     +    + SL  LD+   
Sbjct: 126 NTLELFD----NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL 181

Query: 422 QLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESH 481
           + +  IS      L +++ L L   + +    +  L     L+  +   N      I   
Sbjct: 182 KKLEYISEGAFEGLFNLKYLNLGMCNIK---DMPNLTPLVGLEELEMSGNHF--PEIRPG 236

Query: 482 SLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLR 541
           S    +  L+ L + +     I           L  + L+H  +    P+ L      L 
Sbjct: 237 SFHGLS-SLKKLWVMNSQVSLIE-RNAFDGLASLVELNLAHNNL-SSLPHDLFTPLRYLV 293

Query: 542 QLSLVNDSLV 551
           +L L ++   
Sbjct: 294 ELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 74.4 bits (183), Expect = 6e-14
 Identities = 50/184 (27%), Positives = 76/184 (41%), Gaps = 9/184 (4%)

Query: 562 KQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPS-SFGNMNFLQFLDLSN 620
             L  L++  N     IP    + LS+L    +  N +  SIPS +F  +  L  LDL  
Sbjct: 123 ASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLMRLDLGE 180

Query: 621 -NQLTGEIPEHLAMGCVSLRSLALSNNNLEG-HMFSRNFNLTNLIWLQLEGNHFVGEIPQ 678
             +L   I E    G  +L+ L L   N++     +    L  L  L++ GNHF    P 
Sbjct: 181 LKKLE-YISEGAFEGLFNLKYLNLGMCNIKDMPNLT---PLVGLEELEMSGNHFPEIRPG 236

Query: 679 SLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILD 738
           S    SSL+ L++ N+ +S         L  L  + +  N++       F  LR L  L 
Sbjct: 237 SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELH 296

Query: 739 ISDN 742
           +  N
Sbjct: 297 LHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 64.8 bits (158), Expect = 7e-11
 Identities = 40/219 (18%), Positives = 72/219 (32%), Gaps = 46/219 (21%)

Query: 785 LDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHI 844
           +  +   L+  +P  +   S   YL L  NN++         L+ L++L L  N++    
Sbjct: 59  VVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE 115

Query: 845 PSCFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQ 900
              F+      TL    N  + +                       +F++ +K       
Sbjct: 116 VGAFNGLASLNTLELFDNWLTVIPS--------------------GAFEYLSK------- 148

Query: 901 GRVPSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPS-TFSNLRNIESL 958
                 L  L L  N  I  IP      +  +  L+L        I    F  L N++ L
Sbjct: 149 ------LRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL 201

Query: 959 DLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERA 997
           +L    +   +P  L  L  L    ++ N+   +I   +
Sbjct: 202 NLGMCNIK-DMPN-LTPLVGLEELEMSGNHFP-EIRPGS 237

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  102 bits (255), Expect = 9e-24
 Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 29/224 (12%)

Query: 97  FTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLT 156
                 + +L      +        +E +  L+NL  L L  N   +  L+ L  L+ +T
Sbjct: 37  QADLDGITTLSAFGTGV------TTIEGVQYLNNLIGLELKDNQITD--LAPLKNLTKIT 88

Query: 157 SLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGN 216
            L+LS N LK   ++  +  L+ ++ L++    I           L+ L+NL+V  L  N
Sbjct: 89  ELELSGNPLK---NVSAIAGLQSIKTLDLTSTQITDV------TPLAGLSNLQVLYLDLN 139

Query: 217 LFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQAC 276
              N  +S LA L++L+ L + + ++    D+    +LS L  L    N+I +       
Sbjct: 140 QITN--ISPLAGLTNLQYLSIGNAQVS---DLTPLANLSKLTTLKADDNKISDIS---PL 191

Query: 277 SGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTE 320
           + L  L  +HL    I D    +  + +  +L  + L+    T 
Sbjct: 192 ASLPNLIEVHLKNNQISD----VSPLANTSNLFIVTLTNQTITN 231

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  101 bits (254), Expect = 1e-23
 Identities = 45/277 (16%), Positives = 103/277 (37%), Gaps = 34/277 (12%)

Query: 100 FQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLD 159
                 +    +++            + L  +  L+  G       +  +  L++L  L+
Sbjct: 18  LANAIKIAAGKSNV------TDTVTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLE 69

Query: 160 LSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFN 219
           L  N++    D+  L +L  + +L +  N +           ++ L ++K  DL+     
Sbjct: 70  LKDNQIT---DLAPLKNLTKITELELSGNPLKNV------SAIAGLQSIKTLDLTSTQIT 120

Query: 220 NSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGL 279
           +  ++ LA LS+L+ L L  N++    ++     L+NL+ L +   ++ +       + L
Sbjct: 121 D--VTPLAGLSNLQVLYLDLNQIT---NISPLAGLTNLQYLSIGNAQVSDLT---PLANL 172

Query: 280 RKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELY 339
            KL+ L      I D    +  + S P+L  + L  N  ++          +  +L  + 
Sbjct: 173 SKLTTLKADDNKISD----ISPLASLPNLIEVHLKNNQISD-----VSPLANTSNLFIVT 223

Query: 340 MDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNS 376
           + +  I     F          ++  S +  + +  S
Sbjct: 224 LTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATIS 260

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  101 bits (253), Expect = 2e-23
 Identities = 54/290 (18%), Positives = 119/290 (41%), Gaps = 39/290 (13%)

Query: 170 DIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARL 229
            I    +L +  K+  G++ +   V        + L+ +      G       +  +  L
Sbjct: 11  VIFPDPALANAIKIAAGKSNVTDTVT------QADLDGITTLSAFGTGVTT--IEGVQYL 62

Query: 230 SSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLR 289
           ++L  L L DN++    D+    +L+ + EL++S N + N       +GL+ +  L L  
Sbjct: 63  NNLIGLELKDNQIT---DLAPLKNLTKITELELSGNPLKNVSAI---AGLQSIKTLDLTS 116

Query: 290 VGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNT 349
             I D    +  +    +L  L L  N  T              +L+ L + +A+++ + 
Sbjct: 117 TQITD----VTPLAGLSNLQVLYLDLNQITN-----ISPLAGLTNLQYLSIGNAQVS-DL 166

Query: 350 SFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLAN 409
           + L     ++  +  L   ++ +S+ S      L  L +L E+H+ +N +    P  LAN
Sbjct: 167 TPL----ANLSKLTTLKADDNKISDIS-----PLASLPNLIEVHLKNNQISDVSP--LAN 215

Query: 410 MTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFN 459
            ++L I+ +++      I++ P+ +  ++    +       PI+   + +
Sbjct: 216 TSNLFIVTLTNQT----ITNQPVFYNNNLVVPNVVKGPSGAPIAPATISD 261

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 66.6 bits (163), Expect = 8e-12
 Identities = 49/280 (17%), Positives = 90/280 (32%), Gaps = 55/280 (19%)

Query: 704 LGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLS 763
              L     I   K+++   +      L  +  L      ++ ++        +  + L 
Sbjct: 15  DPALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELK 71

Query: 764 KNMLHGQLKEGTFFNCLT-LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPI 822
            N    Q+ +      LT +  L+LS N L  N+   + GL  +  L L    +    P 
Sbjct: 72  DN----QITDLAPLKNLTKITELELSGNPLK-NVSA-IAGLQSIKTLDLTSTQITDVTP- 124

Query: 823 QLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE---RYNNGSSLQPFETSFVIMGGMDVD 879
            L  L+ LQ+L L  N +  +I      T L          S L P              
Sbjct: 125 -LAGLSNLQVLYLDLNQIT-NISPLAGLTNLQYLSIGNAQVSDLTPLANL---------- 172

Query: 880 PKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHN 939
                                    S L+ L    N+ I  I P + +L  +  ++L +N
Sbjct: 173 -------------------------SKLTTLKADDNK-ISDISP-LASLPNLIEVHLKNN 205

Query: 940 NLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTL 979
            ++   P   +N  N+  + L+   ++ +  +    L   
Sbjct: 206 QISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVP 243

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 51/313 (16%), Positives = 100/313 (31%), Gaps = 57/313 (18%)

Query: 658 NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPK 717
            L N I +    ++    +    +    +  L      ++      +  L  L  + +  
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKD 72

Query: 718 NHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFF 777
           N I    PL+   L  +  L++S N +  ++ +      I+ + L+   +          
Sbjct: 73  NQITDLAPLK--NLTKITELELSGNPLK-NVSAIAGLQSIKTLDLTSTQITDV---TPLA 126

Query: 778 NCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSN 837
               L +L L  N +  NI   + GL+ L YL + +  +    P+    L++L  L   +
Sbjct: 127 GLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDLTPLA--NLSKLTTLKADD 182

Query: 838 NNLHGHIPSCFDNTTLHE---RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKS 894
           N +   I        L E   + N  S + P   +                         
Sbjct: 183 NKIS-DISPLASLPNLIEVHLKNNQISDVSPLANT------------------------- 216

Query: 895 ITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPI-PSTFSNLR 953
                     S L  + L+   +       +     +   N+       PI P+T S+  
Sbjct: 217 ----------SNLFIVTLTNQTITN---QPVFYNNNLVVPNVVKGPSGAPIAPATISDNG 263

Query: 954 NIESLDLSYNKLS 966
              S +L++N  S
Sbjct: 264 TYASPNLTWNLTS 276

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 65.1 bits (159), Expect = 3e-11
 Identities = 59/301 (19%), Positives = 114/301 (37%), Gaps = 27/301 (8%)

Query: 454 LEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQH 513
           + P    +      A  + +  + +    L      + +L        G+T  + +   +
Sbjct: 12  IFPDPALANAIKIAAGKSNVT-DTVTQADLD----GITTLSAFG---TGVTTIEGVQYLN 63

Query: 514 DLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNN 573
           +L  + L   ++ +  P   L+N TK+ +L L  + L       I   + ++ LD++   
Sbjct: 64  NLIGLELKDNQITDLAP---LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTSTQ 118

Query: 574 FQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAM 633
                PL     LS L V  + +N +  +  S    +  LQ+L + N Q++   P  LA 
Sbjct: 119 ITDVTPLAG---LSNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVSDLTP--LA- 170

Query: 634 GCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSN 693
               L +L   +N +     S   +L NLI + L+ N      P  L+  S+L  + L+N
Sbjct: 171 NLSKLTTLKADDNKIS--DISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

Query: 694 NSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYD 753
            +++ +   +  NL V    ++         P            +++ N  S      Y 
Sbjct: 227 QTITNQPVFYNNNLVVP--NVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVSYT 284

Query: 754 F 754
           F
Sbjct: 285 F 285

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 64.3 bits (157), Expect = 4e-11
 Identities = 49/277 (17%), Positives = 98/277 (35%), Gaps = 26/277 (9%)

Query: 386 LVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSD 445
           L +  ++    +++  ++    A++  +  L      +    +   + +L ++  L L D
Sbjct: 18  LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELKD 72

Query: 446 NHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITF 505
           N       L PL N +++   +   N +   +     L      +++L L+S     IT 
Sbjct: 73  NQIT---DLAPLKNLTKITELELSGNPLK-NVSAIAGLQ----SIKTLDLTST---QITD 121

Query: 506 PKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLR 565
              L    +L+ + L   ++    P   L   T L+ LS+ N  +      P+ +  +L 
Sbjct: 122 VTPLAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSDL--TPLANLSKLT 176

Query: 566 LLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTG 625
            L    N      PL     L  L   ++  N +  S  S   N + L  + L+N  +T 
Sbjct: 177 TLKADDNKISDISPLAS---LPNLIEVHLKNNQI--SDVSPLANTSNLFIVTLTNQTITN 231

Query: 626 EIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNL 662
           +   +     V       S   +     S N    + 
Sbjct: 232 QPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASP 268

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 61.2 bits (149), Expect = 4e-10
 Identities = 46/277 (16%), Positives = 90/277 (32%), Gaps = 55/277 (19%)

Query: 680 LSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDI 739
               ++   +    ++++  +     +L  +  +      +     ++   L  L  L++
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQ--YLNNLIGLEL 70

Query: 740 SDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLT-LMILDLSYNHLNGNIPD 798
            DN I+  L    +   I ++ LS N     LK  +    L  +  LDL+   +    P 
Sbjct: 71  KDNQIT-DLAPLKNLTKITELELSGN----PLKNVSAIAGLQSIKTLDLTSTQITDVTP- 124

Query: 799 RVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE--- 855
            + GLS L  L L  N +    P  L  L  LQ L + N  +   +    + + L     
Sbjct: 125 -LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS-DLTPLANLSKLTTLKA 180

Query: 856 RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCN 915
             N  S + P  +                                      L  + L  N
Sbjct: 181 DDNKISDISPLASL-----------------------------------PNLIEVHLKNN 205

Query: 916 RLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNL 952
           + I  + P + N + +  + L++  +        +NL
Sbjct: 206 Q-ISDVSP-LANTSNLFIVTLTNQTITNQPVFYNNNL 240

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 35/169 (20%), Positives = 65/169 (38%), Gaps = 20/169 (11%)

Query: 100 FQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLD 159
              L+ L L  N I        +  L+ L+NL+ L++     ++  L+ LA LS LT+L 
Sbjct: 128 LSNLQVLYLDLNQI------TNISPLAGLTNLQYLSIGNAQVSD--LTPLANLSKLTTLK 179

Query: 160 LSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFN 219
              N++    DI  L SL +L ++++  N I           L+  +NL +  L+     
Sbjct: 180 ADDNKIS---DISPLASLPNLIEVHLKNNQISDV------SPLANTSNLFIVTLTNQTIT 230

Query: 220 NSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEID 268
           N     +   ++L    +        I              ++++N   
Sbjct: 231 N---QPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTS 276

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 55.5 bits (134), Expect = 3e-08
 Identities = 42/212 (19%), Positives = 79/212 (37%), Gaps = 27/212 (12%)

Query: 782 LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH 841
            + +    +++   +      L  ++ L      +     +Q   LN L  L+L +N + 
Sbjct: 21  AIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQ--YLNNLIGLELKDNQIT 76

Query: 842 GHIPSCFDNTTLHE---RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYT 898
             +    + T + E     N   ++                   Q +++ D T+  IT  
Sbjct: 77  -DLAPLKNLTKITELELSGNPLKNVSAIAGL-------------QSIKTLDLTSTQITDV 122

Query: 899 YQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESL 958
                 S L  L L  N+ I +I P +  LT +Q L++ +  ++   P   +NL  + +L
Sbjct: 123 TPLAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTL 178

Query: 959 DLSYNKLSWKIPYQLVELNTLAVFSVAYNNLS 990
               NK+S  I   L  L  L    +  N +S
Sbjct: 179 KADDNKIS-DISP-LASLPNLIEVHLKNNQIS 208

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 31/198 (15%), Positives = 64/198 (32%), Gaps = 35/198 (17%)

Query: 801 DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE---RY 857
             L+    +    +N+   V      L+ +  L      +   I        L     + 
Sbjct: 16  PALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKD 72

Query: 858 NNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSL-----LSGLDL 912
           N  + L P +                 +   + +   +       V ++     +  LDL
Sbjct: 73  NQITDLAPLK-------------NLTKITELELSGNPLK-----NVSAIAGLQSIKTLDL 114

Query: 913 SCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQ 972
           +  + I  + P +  L+ +Q L L  N +    P   + L N++ L +   ++S  +   
Sbjct: 115 TSTQ-ITDVTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS-DLT-P 168

Query: 973 LVELNTLAVFSVAYNNLS 990
           L  L+ L       N +S
Sbjct: 169 LANLSKLTTLKADDNKIS 186

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  104 bits (261), Expect = 1e-23
 Identities = 59/263 (22%), Positives = 98/263 (37%), Gaps = 36/263 (13%)

Query: 584 DILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLAL 643
            I +   + N+  N +     +SF ++  L+ L LS N +   I      G  +L +L L
Sbjct: 61  GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLEL 119

Query: 644 SNNNL---EGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLS-NNSLSGK 699
            +N L       F     L+ L  L L  N        + ++  SL+ L L     LS  
Sbjct: 120 FDNRLTTIPNGAFV---YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYI 176

Query: 700 IPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQ 759
                  L+ LR++ +   ++   IP     L  L  LD+S N++S              
Sbjct: 177 SEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLS-------------- 220

Query: 760 VHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEG 818
                      ++ G+F   + L  L +  + +   I     D L  L  + LAHNNL  
Sbjct: 221 ----------AIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTL 269

Query: 819 EVPIQLCRLNQLQLLDLSNNNLH 841
                   L+ L+ + L +N  +
Sbjct: 270 LPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 94.8 bits (236), Expect = 2e-20
 Identities = 52/236 (22%), Positives = 89/236 (37%), Gaps = 32/236 (13%)

Query: 92  LNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILS---- 147
           +  + F   + LE L L  N I   +E      L+ L+ L        LF+N + +    
Sbjct: 79  IKVNSFKHLRHLEILQLSRNHIRT-IEIGAFNGLANLNTL-------ELFDNRLTTIPNG 130

Query: 148 SLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGR-NMIDKFVVSKGPKRLSRLN 206
           +   LS L  L L  N ++ SI     + +  L +L++G    +              L+
Sbjct: 131 AFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYI----SEGAFEGLS 185

Query: 207 NLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNE 266
           NL+  +L+        + +L  L  L  L L  N L  +I    F  L +L++L M  ++
Sbjct: 186 NLRYLNLAMCNLRE--IPNLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQ 242

Query: 267 IDNFEVPQACSGLRKLSYLHLLRVGIRDGSKL----LQSMGSFPSLNTLDLSYNNF 318
           I   E   A   L+ L  ++L        + L             L  + L +N +
Sbjct: 243 IQVIE-RNAFDNLQSLVEINL------AHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 94.0 bits (234), Expect = 3e-20
 Identities = 65/291 (22%), Positives = 115/291 (39%), Gaps = 58/291 (19%)

Query: 129 SNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRN 188
           +N ++LNL  N      ++S   L  L  L LS N ++ +I+I   + L +L  L +  N
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDN 122

Query: 189 MIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYD-NRLEGSID 247
            +              L+ LK   L  N   +    +  R+ SLR L L +  RL   I 
Sbjct: 123 RLTTI----PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS-YIS 177

Query: 248 VKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPS 307
              F+ LSNL  L+++   +                               + ++     
Sbjct: 178 EGAFEGLSNLRYLNLAMCNLRE-----------------------------IPNLTPLIK 208

Query: 308 LNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIAL--NTSFLQIIGESMPSIQYL 365
           L+ LDLS N+ +     +   F     L++L+M  ++I +    +F     +++ S+  +
Sbjct: 209 LDELDLSGNHLSAIRPGS---FQGLMHLQKLWMIQSQIQVIERNAF-----DNLQSLVEI 260

Query: 366 SLSNSSVSNNSRTLDQG-LCPLVHLQELHMADNDLRGSLPW-CLANMTSLR 414
           +L++    NN   L      PL HL+ +H+  N      PW C  ++  L 
Sbjct: 261 NLAH----NNLTLLPHDLFTPLHHLERIHLHHN------PWNCNCDILWLS 301

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 91.0 bits (226), Expect = 3e-19
 Identities = 58/292 (19%), Positives = 100/292 (34%), Gaps = 75/292 (25%)

Query: 684 SSLQGLFLSNNSLSGKIPRWL-GNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDN 742
           +    +     +L  ++P  +  N  +L    + +N I+      F  LR L+IL +S N
Sbjct: 43  NQFSKVICVRKNLR-EVPDGISTNTRLLN---LHENQIQIIKVNSFKHLRHLEILQLSRN 98

Query: 743 NISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV-D 801
           +I                          ++ G F     L  L+L  N L   IP+    
Sbjct: 99  HIR------------------------TIEIGAFNGLANLNTLELFDNRLT-TIPNGAFV 133

Query: 802 GLSQLSYLILAHNNLEGEVPIQL-CRLNQLQLLDLSNNNLHGHIPS-CFDN----TTLHE 855
            LS+L  L L +N +E  +P     R+  L+ LDL       +I    F+       L+ 
Sbjct: 134 YLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNL 192

Query: 856 RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCN 915
              N   +                                       +  L   LDLS N
Sbjct: 193 AMCNLREIPNLT----------------------------------PLIKLDE-LDLSGN 217

Query: 916 RLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 966
             +  I P     L  +Q L +  + +     + F NL+++  ++L++N L+
Sbjct: 218 H-LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 86.7 bits (215), Expect = 7e-18
 Identities = 50/198 (25%), Positives = 82/198 (41%), Gaps = 14/198 (7%)

Query: 91  YLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLA 150
            +    F     L +L+L DN +   + N        LS LK L L  N   +    +  
Sbjct: 102 TIEIGAFNGLANLNTLELFDNRLTT-IPNGAF---VYLSKLKELWLRNNPIESIPSYAFN 157

Query: 151 RLSSLTSLDLS-ANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLK 209
           R+ SL  LDL    RL   I     + L +L  LN+    + +         L+ L  L 
Sbjct: 158 RIPSLRRLDLGELKRLS-YISEGAFEGLSNLRYLNLAMCNLREI------PNLTPLIKLD 210

Query: 210 VFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDN 269
             DLSGN  +     S   L  L+ L +  ++++  I+   FD+L +L E+++++N +  
Sbjct: 211 ELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTL 269

Query: 270 FEVPQACSGLRKLSYLHL 287
                  + L  L  +HL
Sbjct: 270 LP-HDLFTPLHHLERIHL 286

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 77.5 bits (191), Expect = 7e-15
 Identities = 47/220 (21%), Positives = 71/220 (32%), Gaps = 43/220 (19%)

Query: 784 ILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHG 842
           +L+L  N +   I       L  L  L L+ N++          L  L  L+L +N L  
Sbjct: 68  LLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT 126

Query: 843 HIPSCFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYT 898
                F        L  R N   S+                       +F+         
Sbjct: 127 IPNGAFVYLSKLKELWLRNNPIESIPS--------------------YAFNRIPS----- 161

Query: 899 YQGRVPSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIES 957
                   L  LDL   + + +I       L+ ++ LNL+  NL   IP   + L  ++ 
Sbjct: 162 --------LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDE 211

Query: 958 LDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERA 997
           LDLS N LS   P     L  L    +  + +   I   A
Sbjct: 212 LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNA 250

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 75.2 bits (185), Expect = 3e-14
 Identities = 45/182 (24%), Positives = 69/182 (37%), Gaps = 7/182 (3%)

Query: 563 QLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLS-NN 621
            L  L++  N     IP      LS+L    +  N ++     +F  +  L+ LDL    
Sbjct: 113 NLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK 171

Query: 622 QLTGEIPEHLAMGCVSLRSLALSNNNLEG-HMFSRNFNLTNLIWLQLEGNHFVGEIPQSL 680
           +L+  I E    G  +LR L L+  NL      +    L  L  L L GNH     P S 
Sbjct: 172 RLS-YISEGAFEGLSNLRYLNLAMCNLREIPNLT---PLIKLDELDLSGNHLSAIRPGSF 227

Query: 681 SKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDIS 740
                LQ L++  + +         NL  L  I +  N++       F  L  L+ + + 
Sbjct: 228 QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLH 287

Query: 741 DN 742
            N
Sbjct: 288 HN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 74.0 bits (182), Expect = 8e-14
 Identities = 47/250 (18%), Positives = 86/250 (34%), Gaps = 23/250 (9%)

Query: 305 FPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIAL--NTSFLQIIGESMPSI 362
             +   L+L  N        +   F H + L+ L +    I      +F       + ++
Sbjct: 63  STNTRLLNLHENQIQIIKVNS---FKHLRHLEILQLSRNHIRTIEIGAF-----NGLANL 114

Query: 363 QYLSLSNSSVSNNSRTLDQG-LCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSN 421
             L L +    N   T+  G    L  L+EL + +N +     +    + SLR LD+   
Sbjct: 115 NTLELFD----NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL 170

Query: 422 QLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESH 481
           + +  IS      L+++  L L+  + +    +  L    +L   D   N +    I   
Sbjct: 171 KRLSYISEGAFEGLSNLRYLNLAMCNLR---EIPNLTPLIKLDELDLSGNHL--SAIRPG 225

Query: 482 SLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLR 541
           S       LQ L +       I       N   L  + L+H  +    P+ L      L 
Sbjct: 226 SFQGLM-HLQKLWMIQSQIQVIE-RNAFDNLQSLVEINLAHNNL-TLLPHDLFTPLHHLE 282

Query: 542 QLSLVNDSLV 551
           ++ L ++   
Sbjct: 283 RIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 54.4 bits (131), Expect = 1e-07
 Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 3/96 (3%)

Query: 903 VPSLLSGLDLSCNRLIGHIPP-QIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLS 961
           + +    L+L  N+ I  I      +L  ++ L LS N++       F+ L N+ +L+L 
Sbjct: 62  ISTNTRLLNLHENQ-IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120

Query: 962 YNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERA 997
            N+L+       V L+ L    +  N +   IP  A
Sbjct: 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYA 155

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  101 bits (254), Expect = 1e-23
 Identities = 49/239 (20%), Positives = 95/239 (39%), Gaps = 29/239 (12%)

Query: 100 FQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLD 159
           F +    +L+   +            + L+++  +    +   +  +  +  L ++T L 
Sbjct: 23  FAETIKDNLKKKSV------TDAVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLF 74

Query: 160 LSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFN 219
           L+ N+L    DIK L +L++L  L +  N +           L  L  LK   L  N  +
Sbjct: 75  LNGNKLT---DIKPLANLKNLGWLFLDENKVKDLSS------LKDLKKLKSLSLEHNGIS 125

Query: 220 NSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGL 279
           +  ++ L  L  L SL L +N++    D+     L+ L+ L +  N+I +       +GL
Sbjct: 126 D--INGLVHLPQLESLYLGNNKIT---DITVLSRLTKLDTLSLEDNQISDIV---PLAGL 177

Query: 280 RKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKEL 338
            KL  L+L +  I D    L+++    +L+ L+L                    ++K  
Sbjct: 178 TKLQNLYLSKNHISD----LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 232

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 94.0 bits (234), Expect = 4e-21
 Identities = 53/255 (20%), Positives = 89/255 (34%), Gaps = 28/255 (10%)

Query: 122 LERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLE 181
           +      +     NL      +    +   L+S+  +  + + +K    ++ +  L ++ 
Sbjct: 17  IFSDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK---SVQGIQYLPNVT 71

Query: 182 KLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNR 241
           KL +  N +         K L+ L NL    L  N      LSSL  L  L+SL L  N 
Sbjct: 72  KLFLNGNKLTDI------KPLANLKNLGWLFLDEN--KVKDLSSLKDLKKLKSLSLEHNG 123

Query: 242 LEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQS 301
           +    D+     L  LE L +  N+I +  V    S L KL  L L    I D    +  
Sbjct: 124 IS---DINGLVHLPQLESLYLGNNKITDITVL---SRLTKLDTLSLEDNQISD----IVP 173

Query: 302 MGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPS 361
           +     L  L LS N+ ++      +     K+L  L +            Q       +
Sbjct: 174 LAGLTKLQNLYLSKNHISD-----LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNT 228

Query: 362 IQYLSLSNSSVSNNS 376
           ++    S  +    S
Sbjct: 229 VKNTDGSLVTPEIIS 243

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 87.8 bits (218), Expect = 5e-19
 Identities = 51/176 (28%), Positives = 71/176 (40%), Gaps = 22/176 (12%)

Query: 97  FTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLT 156
                 +  L L  N +        ++ L+ L NL  L L  N      LSSL  L  L 
Sbjct: 64  IQYLPNVTKLFLNGNKL------TDIKPLANLKNLGWLFLDEN--KVKDLSSLKDLKKLK 115

Query: 157 SLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGN 216
           SL L  N +    DI  L  L  LE L +G N I           LSRL  L    L  N
Sbjct: 116 SLSLEHNGIS---DINGLVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDN 166

Query: 217 LFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEV 272
             ++  +  LA L+ L++L L  N +    D++    L NL+ L++   E  N  +
Sbjct: 167 QISD--IVPLAGLTKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQECLNKPI 217

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 86.6 bits (215), Expect = 1e-18
 Identities = 50/296 (16%), Positives = 109/296 (36%), Gaps = 58/296 (19%)

Query: 170 DIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARL 229
            I   D+  +  K N+ +  +   V        + LN++     + +   +  +  +  L
Sbjct: 16  QIFSDDAFAETIKDNLKKKSVTDAVT------QNELNSIDQIIANNSDIKS--VQGIQYL 67

Query: 230 SSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLR 289
            ++  L L  N+L    D+K   +L NL  L +  N++ +         L+ L       
Sbjct: 68  PNVTKLFLNGNKLT---DIKPLANLKNLGWLFLDENKVKDLS------SLKDL------- 111

Query: 290 VGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNT 349
                             L +L L +N  ++       G  H   L+ LY+ + +I  + 
Sbjct: 112 ----------------KKLKSLSLEHNGISD-----INGLVHLPQLESLYLGNNKIT-DI 149

Query: 350 SFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLAN 409
           + L      +  +  LSL ++ +S+        L  L  LQ L+++ N +       LA 
Sbjct: 150 TVL----SRLTKLDTLSLEDNQISDIV-----PLAGLTKLQNLYLSKNHISDLRA--LAG 198

Query: 410 MTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKI 465
           + +L +L++ S +   +   +   +L     +  +D     P  +    ++ +  +
Sbjct: 199 LKNLDVLELFSQE-CLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNV 253

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 84.7 bits (210), Expect = 5e-18
 Identities = 48/247 (19%), Positives = 102/247 (41%), Gaps = 30/247 (12%)

Query: 247 DVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFP 306
            +   D+ +   + ++    + +       + L  +  +      I+     +Q +   P
Sbjct: 16  QIFSDDAFAETIKDNLKKKSVTDAV---TQNELNSIDQIIANNSDIKS----VQGIQYLP 68

Query: 307 SLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLS 366
           ++  L L+ N  T+      +   + K+L  L++D+ ++  + S L    + +  ++ LS
Sbjct: 69  NVTKLFLNGNKLTDI-----KPLANLKNLGWLFLDENKVK-DLSSL----KDLKKLKSLS 118

Query: 367 LSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGS 426
           L ++ +S+ +     GL  L  L+ L++ +N +       L+ +T L  L +  NQ I  
Sbjct: 119 LEHNGISDIN-----GLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQ-ISD 170

Query: 427 ISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTP 486
           I   PL  LT +++L LS NH      L  L     L + +  + E   + I   S    
Sbjct: 171 IV--PLAGLTKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQECLNKPINHQSNLVV 225

Query: 487 NFQLQSL 493
              +++ 
Sbjct: 226 PNTVKNT 232

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 75.1 bits (185), Expect = 9e-15
 Identities = 48/257 (18%), Positives = 94/257 (36%), Gaps = 21/257 (8%)

Query: 586 LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSN 645
            +     N+   ++      +   +N +  +  +N+ +   + + +     ++  L L+ 
Sbjct: 23  FAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SV-QGIQ-YLPNVTKLFLNG 77

Query: 646 NNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLG 705
           N L         NL NL WL L+ N  V ++  SL     L+ L L +N +S  I   L 
Sbjct: 78  NKLT--DIKPLANLKNLGWLFLDENK-VKDL-SSLKDLKKLKSLSLEHNGIS-DIN-GLV 131

Query: 706 NLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKN 765
           +L  L  + +  N I     L   +L  L  L + DN IS  +        ++ ++LSKN
Sbjct: 132 HLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQIS-DIVPLAGLTKLQNLYLSKN 188

Query: 766 MLHGQLKEGTFFNCLT-LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQL 824
                + +      L  L +L+L          +    L   + +     +L    P  +
Sbjct: 189 ----HISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEII 242

Query: 825 CRLNQLQLLDLSNNNLH 841
                 +  ++  +   
Sbjct: 243 SDDGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 69.7 bits (171), Expect = 7e-13
 Identities = 37/157 (23%), Positives = 62/157 (39%), Gaps = 17/157 (10%)

Query: 102 QLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLS 161
           +L+SL L  N I        +  L  L  L+ L L  N    + ++ L+RL+ L +L L 
Sbjct: 113 KLKSLSLEHNGI------SDINGLVHLPQLESLYLGNN--KITDITVLSRLTKLDTLSLE 164

Query: 162 ANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNS 221
            N++    DI  L  L  L+ L + +N I         + L+ L NL V +L      N 
Sbjct: 165 DNQIS---DIVPLAGLTKLQNLYLSKNHISDL------RALAGLKNLDVLELFSQECLNK 215

Query: 222 ILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLE 258
            ++  + L    ++   D  L     + +        
Sbjct: 216 PINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPN 252

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 47/291 (16%), Positives = 93/291 (31%), Gaps = 55/291 (18%)

Query: 680 LSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDI 739
               +      L   S++  +      L  +  II   + I+    ++   L  +  L +
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFL 75

Query: 740 SDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLT-LMILDLSYNHLNGNIPD 798
           + N ++  +    +   +  + L +N    ++K+ +    L  L  L L +N ++ +I  
Sbjct: 76  NGNKLT-DIKPLANLKNLGWLFLDEN----KVKDLSSLKDLKKLKSLSLEHNGIS-DING 129

Query: 799 RVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE--- 855
            +  L QL  L L +N +       L RL +L  L L +N +   I      T L     
Sbjct: 130 -LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DIVPLAGLTKLQNLYL 185

Query: 856 RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCN 915
             N+ S L+                                          L  L+L   
Sbjct: 186 SKNHISDLRALAGL-----------------------------------KNLDVLELFSQ 210

Query: 916 RLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 966
             +        NL    T+  +  +L    P   S+  + E  ++ ++   
Sbjct: 211 ECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.1 bits (141), Expect = 4e-09
 Identities = 41/226 (18%), Positives = 84/226 (37%), Gaps = 26/226 (11%)

Query: 534 LENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDI-----LSR 588
           ++    + +L L  + L      P+ + K L  L + +N         + D+     L +
Sbjct: 64  IQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENK--------VKDLSSLKDLKK 113

Query: 589 LTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNL 648
           L   ++  N +  S  +   ++  L+ L L NN++T      L+     L +L+L +N +
Sbjct: 114 LKSLSLEHNGI--SDINGLVHLPQLESLYLGNNKITD--ITVLS-RLTKLDTLSLEDNQI 168

Query: 649 EGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLT 708
                     LT L  L L  NH + ++ ++L+   +L  L L +     K      NL 
Sbjct: 169 S--DIVPLAGLTKLQNLYLSKNH-ISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLV 224

Query: 709 VLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDF 754
           V   +      +  P  +        +  ++  +    +    + F
Sbjct: 225 VPNTVKNTDGSLVTPEIISD--DGDYEKPNVKWHLPEFTNEVSFIF 268

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.8 bits (140), Expect = 5e-09
 Identities = 45/309 (14%), Positives = 87/309 (28%), Gaps = 59/309 (19%)

Query: 689 LFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSL 748
                  +                  + K  +   +     +L  +  +  ++++I  S+
Sbjct: 7   TITVPTPIKQIFS--DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SV 61

Query: 749 PSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLT-LMILDLSYNHLNGNIPDRVDGLSQLS 807
                   + ++ L+ N    +L +      L  L  L L  N +  ++   +  L +L 
Sbjct: 62  QGIQYLPNVTKLFLNGN----KLTDIKPLANLKNLGWLFLDENKVK-DL-SSLKDLKKLK 115

Query: 808 YLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN----TTLHERYNNGSSL 863
            L L HN +     +    L QL+ L L NN +     +         TL    N  S +
Sbjct: 116 SLSLEHNGISDINGLV--HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI 171

Query: 864 QPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPP 923
            P                                       + L  L LS N  I  +  
Sbjct: 172 VPLAG-----------------------------------LTKLQNLYLSKNH-ISDLRA 195

Query: 924 QIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFS 983
            +  L  +  L L          +  SNL    ++  +   L    P  + +       +
Sbjct: 196 -LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV--TPEIISDDGDYEKPN 252

Query: 984 VAYNNLSGK 992
           V ++     
Sbjct: 253 VKWHLPEFT 261

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  102 bits (256), Expect = 2e-23
 Identities = 53/284 (18%), Positives = 105/284 (36%), Gaps = 29/284 (10%)

Query: 564 LRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPS-SFGNMNFLQFLDLSNNQ 622
           ++ LD+S N    +I          L    ++ N ++ +I   SF ++  L+ LDLS N 
Sbjct: 54  VKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNY 111

Query: 623 LTGEIPEHLAMGCVSLRSLALSNNNL----EGHMFSRNFNLTNLIWLQLEGNHFVGEIP- 677
           L+  +         SL  L L  N      E  +FS   +LT L  L++       +I  
Sbjct: 112 LS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFS---HLTKLQILRVGNMDTFTKIQR 167

Query: 678 QSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQIL 737
           +  +  + L+ L +  + L    P+ L ++  + H+I+        + +       ++ L
Sbjct: 168 KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECL 227

Query: 738 DISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIP 797
           ++ D ++                    + L    +  +     T   + ++   L   + 
Sbjct: 228 ELRDTDLD---------------TFHFSELS-TGETNSLIKKFTFRNVKITDESLF-QVM 270

Query: 798 DRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH 841
             ++ +S L  L  + N L+        RL  LQ + L  N   
Sbjct: 271 KLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  102 bits (255), Expect = 2e-23
 Identities = 57/307 (18%), Positives = 106/307 (34%), Gaps = 54/307 (17%)

Query: 153 SSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFD 212
            ++ SLDLS NR+   I   +L    +L+ L +  N I+                     
Sbjct: 52  EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN--------------------T 90

Query: 213 LSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEV 272
           +  + F++        L SL  L L  N L  ++    F  LS+L  L++  N       
Sbjct: 91  IEEDSFSS--------LGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGE 141

Query: 273 PQACSGLRKLSYLHLLRVGIRDGSKLLQSM--GSF---PSLNTLDLSYNNFTETVTTTTQ 327
               S L KL  L +              +    F     L  L++  ++       +  
Sbjct: 142 TSLFSHLTKLQILRVGN------MDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS-- 193

Query: 328 GFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRT-----LDQG 382
                +++  L +   +       L+I  +   S++ L L ++ +     +         
Sbjct: 194 -LKSIQNVSHLILHMKQH---ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNS 249

Query: 383 LCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLI 442
           L      + + + D  L   +   L  ++ L  L+ S NQL  S+       LTS++ + 
Sbjct: 250 LIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIW 307

Query: 443 LSDNHFQ 449
           L  N + 
Sbjct: 308 LHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 95.6 bits (238), Expect = 4e-21
 Identities = 59/278 (21%), Positives = 116/278 (41%), Gaps = 27/278 (9%)

Query: 129 SNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRN 188
             +K L+L  N       S L R  +L +L L++N +  +I+     SL  LE L++  N
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYN 110

Query: 189 MIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNN-SILSSLARLSSLRSLLLYDNRLEGSID 247
            +     +        L++L   +L GN +      S  + L+ L+ L + +      I 
Sbjct: 111 YL----SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166

Query: 248 VKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHL-------LRVGIRDGSKLLQ 300
            K+F  L+ LEEL++  +++ ++E P++   ++ +S+L L       L     D +  ++
Sbjct: 167 RKDFAGLTFLEELEIDASDLQSYE-PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVE 225

Query: 301 SMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMP 360
            +     L   DL   +F+E  T  T       + + + + D  +      L      + 
Sbjct: 226 CL----ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLN----QIS 277

Query: 361 SIQYLSLSNSSVSNNSRTLDQGLC-PLVHLQELHMADN 397
            +  L  S     N  +++  G+   L  LQ++ +  N
Sbjct: 278 GLLELEFSR----NQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 87.1 bits (216), Expect = 2e-18
 Identities = 52/301 (17%), Positives = 101/301 (33%), Gaps = 44/301 (14%)

Query: 676 IPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQ 735
           IP  L+   +++ L LSNN ++      L     L+ +++  N I       F  L  L+
Sbjct: 46  IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103

Query: 736 ILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGN 795
            LD+S N +S +L S                         F    +L  L+L  N     
Sbjct: 104 HLDLSYNYLS-NLSS-----------------------SWFKPLSSLTFLNLLGNPYKTL 139

Query: 796 IPDRV-DGLSQLSYLILAHNNLEGEVPIQ-LCRLNQLQLLDLSNNNLHGHIPSCFDN--- 850
               +   L++L  L + + +   ++  +    L  L+ L++  ++L  + P    +   
Sbjct: 140 GETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQN 199

Query: 851 -TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSL--- 906
            + L         L        +   +    +   L   D  T   +    G   SL   
Sbjct: 200 VSHLILHMKQHILLLE--IFVDVTSSV----ECLELRDTDLDTFHFSELSTGETNSLIKK 253

Query: 907 --LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNK 964
                + ++   L   +   +  ++ +  L  S N L       F  L +++ + L  N 
Sbjct: 254 FTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312

Query: 965 L 965
            
Sbjct: 313 W 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 78.6 bits (194), Expect = 1e-15
 Identities = 48/255 (18%), Positives = 92/255 (36%), Gaps = 39/255 (15%)

Query: 92  LNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLAR 151
           +    F+    LE LDL  N             LS LS+                S    
Sbjct: 91  IEEDSFSSLGSLEHLDLSYN------------YLSNLSS----------------SWFKP 122

Query: 152 LSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVF 211
           LSSLT L+L  N  K   +      L  L+ L +G       +     K  + L  L+  
Sbjct: 123 LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI---QRKDFAGLTFLEEL 179

Query: 212 DLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFE 271
           ++  +   +    SL  + ++  L+L+  +    +     D  S++E L++   ++D F 
Sbjct: 180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFH 238

Query: 272 VPQACSG----LRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQ 327
             +  +G    L K      +++      ++++ +     L  L+ S N      +    
Sbjct: 239 FSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK---SVPDG 295

Query: 328 GFPHFKSLKELYMDD 342
            F    SL+++++  
Sbjct: 296 IFDRLTSLQKIWLHT 310

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 74.0 bits (182), Expect = 5e-14
 Identities = 49/280 (17%), Positives = 92/280 (32%), Gaps = 57/280 (20%)

Query: 230 SSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLR 289
            +++SL L +NR+   I   +     NL+ L ++ N I+  E   + S L  L +L L  
Sbjct: 52  EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIE-EDSFSSLGSLEHLDL-- 107

Query: 290 VGIRDGSKLLQSM--GSF---PSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDAR 344
                    L ++    F    SL  L+L  N +     T+   F H   L+ L + +  
Sbjct: 108 -----SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL--FSHLTKLQILRVGN-- 158

Query: 345 IALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLP 404
                         M +   +               +    L  L+EL +  +DL+   P
Sbjct: 159 --------------MDTFTKIQ-------------RKDFAGLTFLEELEIDASDLQSYEP 191

Query: 405 WCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQI-------PISLEPL 457
             L ++ ++  L +   Q    +    +   +S+E L L D                  L
Sbjct: 192 KSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSL 250

Query: 458 FNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSS 497
                 +     +  +   +   + ++     L  L  S 
Sbjct: 251 IKKFTFRNVKITDESLFQVMKLLNQIS----GLLELEFSR 286

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 72.1 bits (177), Expect = 2e-13
 Identities = 58/314 (18%), Positives = 108/314 (34%), Gaps = 70/314 (22%)

Query: 411 TSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAEN 470
            +++ LD+S+N+ I  IS+S L    +++ L+L+ N      ++E          F    
Sbjct: 52  EAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNGIN---TIEE-------DSFS--- 97

Query: 471 NEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFP 530
                      SL      L+ L LS              N        LS++       
Sbjct: 98  -----------SLG----SLEHLDLSY-------------NY-------LSNL------S 116

Query: 531 NWLLENNTKLRQLSLVNDSL--VGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSR 588
           +   +  + L  L+L+ +    +G   L      +L++L V   +    I  +    L+ 
Sbjct: 117 SSWFKPLSSLTFLNLLGNPYKTLGETSLF-SHLTKLQILRVGNMDTFTKIQRKDFAGLTF 175

Query: 589 LTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNL 648
           L    I  + L    P S  ++  +  L L   Q    + E       S+  L L + +L
Sbjct: 176 LEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDL 234

Query: 649 EGH--------MFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKI 700
           +            +          +++       ++ + L++ S L  L  S N L   +
Sbjct: 235 DTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-V 292

Query: 701 PRW-LGNLTVLRHI 713
           P      LT L+ I
Sbjct: 293 PDGIFDRLTSLQKI 306

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 70.1 bits (172), Expect = 8e-13
 Identities = 45/255 (17%), Positives = 75/255 (29%), Gaps = 51/255 (20%)

Query: 781  TLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQL-CRLNQLQLLDLSNN 838
             +  LDLS N +   I +        L  L+L  N +   +       L  L+ LDLS N
Sbjct: 53   AVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYN 110

Query: 839  NLHGHIPSCFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKS 894
             L     S F      T L+   N   +L                        F   TK 
Sbjct: 111  YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL-------------------FSHLTK- 150

Query: 895  ITYTYQGRVPSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLR 953
                        L  L +        I  +    LT ++ L +  ++L    P +  +++
Sbjct: 151  ------------LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ 198

Query: 954  NIESLDLSYNKLSWKIPY---------QLVELNTLAVFSVAYNNLSGKIPERAAQFATFN 1004
            N+  L L   +    +           + +EL    + +  ++ LS        +  TF 
Sbjct: 199  NVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR 257

Query: 1005 ESSYEGNPFLCGPPL 1019
                          L
Sbjct: 258  NVKITDESLFQVMKL 272

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 65.1 bits (159), Expect = 3e-11
 Identities = 60/352 (17%), Positives = 107/352 (30%), Gaps = 93/352 (26%)

Query: 303 GSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGE----S 358
           G   ++ +LDLS N  T    +         +L+ L        L ++ +  I E    S
Sbjct: 49  GLTEAVKSLDLSNNRITYISNSD---LQRCVNLQALV-------LTSNGINTIEEDSFSS 98

Query: 359 MPSIQYLSLSNSSVSNNSRTLDQGL-CPLVHLQELHMADNDLRGSLPW-CLANMTSLRIL 416
           + S+++L LS     N    L      PL  L  L++  N  +        +++T L+IL
Sbjct: 99  LGSLEHLDLSY----NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQIL 154

Query: 417 DVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAE 476
            V +      I       LT +E+L +  +  Q   S EP       K            
Sbjct: 155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ---SYEP-------KSLK--------- 195

Query: 477 IIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLEN 536
                S+      +  L+L                Q          +          ++ 
Sbjct: 196 -----SIQ----NVSHLILH-------------MKQ-------HILL------LEIFVDV 220

Query: 537 NTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISM 596
            + +  L L            + +     L     N+                    I+ 
Sbjct: 221 TSSVECLEL--------RDTDLDTFHFSELSTGETNSLIK---------KFTFRNVKITD 263

Query: 597 NALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNL 648
            +L   +      ++ L  L+ S NQL   +P+ +     SL+ + L  N  
Sbjct: 264 ESL-FQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 59.7 bits (145), Expect = 2e-09
 Identities = 28/179 (15%), Positives = 60/179 (33%), Gaps = 35/179 (19%)

Query: 91  YLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLA 150
            +    F     LE L++  +             L                      SL 
Sbjct: 164 KIQRKDFAGLTFLEELEIDAS------------DLQSYEP----------------KSLK 195

Query: 151 RLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPK----RLSRLN 206
            + +++ L L   +    +    +D    +E L +    +D F  S+        L +  
Sbjct: 196 SIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKF 254

Query: 207 NLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYN 265
             +   ++       ++  L ++S L  L    N+L+ S+    FD L++L+++ +  N
Sbjct: 255 TFRNVKITDESL-FQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTN 311

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  103 bits (258), Expect = 4e-23
 Identities = 66/345 (19%), Positives = 110/345 (31%), Gaps = 53/345 (15%)

Query: 129 SNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRN 188
            N             +   S  +L++LTSLD   + +    D+  ++ L  L KL    N
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT---DMTGIEKLTGLTKLICTSN 74

Query: 189 MIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDV 248
            I    +S+         NL       N   N  ++    L+ L  L    N+L   +D 
Sbjct: 75  NITTLDLSQ-------NTNLTYLACDSNKLTNLDVTP---LTKLTYLNCDTNKLT-KLD- 122

Query: 249 KEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSL 308
                   L  L+ + N +   +V    S   +L+ L            +         L
Sbjct: 123 --VSQNPLLTYLNCARNTLTEIDV----SHNTQLTELDCHLNKKITKLDV----TPQTQL 172

Query: 309 NTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLS 368
            TLD S+N  TE            K L  L  D   I       ++       + +L  S
Sbjct: 173 TTLDCSFNKITEL------DVSQNKLLNRLNCDTNNIT------KLDLNQNIQLTFLDCS 220

Query: 369 NSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSIS 428
           +    N    +D  + PL  L     + N L   L   ++ ++ L  L      L     
Sbjct: 221 S----NKLTEID--VTPLTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDL----L 267

Query: 429 SSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEI 473
              L H T +             I    + ++++L + D +   I
Sbjct: 268 EIDLTHNTQLIYFQAEGCRK---IKELDVTHNTQLYLLDCQAAGI 309

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  102 bits (257), Expect = 5e-23
 Identities = 63/378 (16%), Positives = 112/378 (29%), Gaps = 65/378 (17%)

Query: 97  FTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLT 156
                 L  L    N+I        L+ LS+ +NL  L    N   N  ++    L+ LT
Sbjct: 60  IEKLTGLTKLICTSNNI------TTLD-LSQNTNLTYLACDSNKLTNLDVTP---LTKLT 109

Query: 157 SLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGN 216
            L+   N+L   +D+ +      L  LN  RN + +  VS           L   D   N
Sbjct: 110 YLNCDTNKLT-KLDVSQNPL---LTYLNCARNTLTEIDVSH-------NTQLTELDCHLN 158

Query: 217 LFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQAC 276
                    +   + L +L    N++   +D         L  L+   N I   ++    
Sbjct: 159 --KKITKLDVTPQTQLTTLDCSFNKIT-ELD---VSQNKLLNRLNCDTNNITKLDL---- 208

Query: 277 SGLRKLSYLHLLRVGIRDGSKLLQ-SMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSL 335
           +   +L++L          +KL +  +     L   D S N  TE              L
Sbjct: 209 NQNIQLTFLDC------SSNKLTEIDVTPLTQLTYFDCSVNPLTE------LDVSTLSKL 256

Query: 336 KELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMA 395
             L+     +             +       L         +  +  +     L  L   
Sbjct: 257 TTLHCIQTDL-----------LEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQ 305

Query: 396 DNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLE 455
              +   L   L+    L  L +++ +L    +   + H T ++ L   + H Q      
Sbjct: 306 AAGIT-ELD--LSQNPKLVYLYLNNTEL----TELDVSHNTKLKSLSCVNAHIQ---DFS 355

Query: 456 PLFNHSRLKIFDAENNEI 473
            +     L        + 
Sbjct: 356 SVGKIPALNNNFEAEGQT 373

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  102 bits (257), Expect = 5e-23
 Identities = 69/409 (16%), Positives = 134/409 (32%), Gaps = 74/409 (18%)

Query: 92  LNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILS-SLA 150
            +         L SLD  ++ I        +  + +L+ L  L       +N+I +  L+
Sbjct: 33  TDTISEEQLATLTSLDCHNSSI------TDMTGIEKLTGLTKL----ICTSNNITTLDLS 82

Query: 151 RLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKV 210
           + ++LT L   +N+L  ++D+     L  L  LN   N + K  VS+          L  
Sbjct: 83  QNTNLTYLACDSNKLT-NLDV---TPLTKLTYLNCDTNKLTKLDVSQ-------NPLLTY 131

Query: 211 FDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNF 270
            + + N      +S     + L  L  + N+    I   +    + L  LD S+N+I   
Sbjct: 132 LNCARNTLTEIDVSH---NTQLTELDCHLNKK---ITKLDVTPQTQLTTLDCSFNKITEL 185

Query: 271 EVPQACSGLRKLSYLHLLRVGIRDGSKLLQ-SMGSFPSLNTLDLSYNNFTETVTTTTQGF 329
           +V    S  + L+ L+       D + + +  +     L  LD S N        T    
Sbjct: 186 DV----SQNKLLNRLNC------DTNNITKLDLNQNIQLTFLDCSSNKL------TEIDV 229

Query: 330 PHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHL 389
                L         +       ++   ++  +  L         +   +D  L     L
Sbjct: 230 TPLTQLTYFDCSVNPLT------ELDVSTLSKLTTLHCIQ----TDLLEID--LTHNTQL 277

Query: 390 QELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQ 449
                        L   + + T L +LD  +      I+   L     +  L L++    
Sbjct: 278 IYFQAEGCRKIKELD--VTHNTQLYLLDCQAAG----ITELDLSQNPKLVYLYLNNTELT 331

Query: 450 -IPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSS 497
            + +S     ++++LK     N  I  +      +      L +   + 
Sbjct: 332 ELDVS-----HNTKLKSLSCVNAHIQ-DFSSVGKIP----ALNNNFEAE 370

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  100 bits (251), Expect = 3e-22
 Identities = 66/395 (16%), Positives = 127/395 (32%), Gaps = 49/395 (12%)

Query: 597 NALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRN 656
             +  +   S   +  L  LD  N+ +T ++          L  L  ++NN+     S  
Sbjct: 28  FEMQATDTISEEQLATLTSLDCHNSSIT-DMTG--IEKLTGLTKLICTSNNITTLDLS-- 82

Query: 657 FNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMP 716
              TNL +L  + N     +   ++  + L  L    N L+ K+   +    +L ++   
Sbjct: 83  -QNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT-KLD--VSQNPLLTYLNCA 135

Query: 717 KNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTF 776
           +N +     ++      L  LD   N    +         +  +  S N    ++ E   
Sbjct: 136 RNTLT---EIDVSHNTQLTELDCHLNKKI-TKLDVTPQTQLTTLDCSFN----KITELDV 187

Query: 777 FNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLS 836
                L  L+   N++   +   ++   QL++L  + N L     I +  L QL   D S
Sbjct: 188 SQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLTE---IDVTPLTQLTYFDCS 241

Query: 837 NNNLHGHIPSCFDN-TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSI 895
            N L     S     TTLH    +   +             D+    Q++       + I
Sbjct: 242 VNPLTELDVSTLSKLTTLHCIQTDLLEI-------------DLTHNTQLIYFQAEGCRKI 288

Query: 896 TYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNI 955
                     L   LD     +   +   +    K+  L L++  L   +    S+   +
Sbjct: 289 KELDVTHNTQLYL-LDCQAAGIT-ELD--LSQNPKLVYLYLNNTELTE-LD--VSHNTKL 341

Query: 956 ESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLS 990
           +SL      +       + ++  L     A     
Sbjct: 342 KSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTI 374

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 95.9 bits (239), Expect = 1e-20
 Identities = 75/454 (16%), Positives = 142/454 (31%), Gaps = 75/454 (16%)

Query: 385 PLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILS 444
           P  +      A  +++ +       + +L  LD  ++ +      + +  LT +  LI +
Sbjct: 16  PDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSI---TDMTGIEKLTGLTKLICT 72

Query: 445 DNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGIT 504
            N+    I+   L  ++ L     ++N++    +      TP  +L  L   +     + 
Sbjct: 73  SNN----ITTLDLSQNTNLTYLACDSNKLTNLDV------TPLTKLTYLNCDTNKLTKLD 122

Query: 505 FPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQL 564
             +       L Y+  +   + E      + +NT+L +L    +  +    L +    QL
Sbjct: 123 VSQN----PLLTYLNCARNTLTE----IDVSHNTQLTELDCHLNKKITK--LDVTPQTQL 172

Query: 565 RLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLT 624
             LD S N       L++      L   N   N +   +         L FLD S+N+LT
Sbjct: 173 TTLDCSFNKITE---LDVSQ-NKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT 225

Query: 625 GEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCS 684
            EI          L     S N L     S    L+ L  L       + EI   L+  +
Sbjct: 226 -EIDVT---PLTQLTYFDCSVNPLTELDVS---TLSKLTTLHCIQTDLL-EID--LTHNT 275

Query: 685 SLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNI 744
            L            ++   + + T L  +      I     L+  Q   L  L +++  +
Sbjct: 276 QLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTEL 330

Query: 745 SGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLS 804
           +  L                             +   L  L     H+  +    V  + 
Sbjct: 331 T-ELD--------------------------VSHNTKLKSLSCVNAHIQ-DFSS-VGKIP 361

Query: 805 QLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNN 838
            L+    A       +P +    N L +    + 
Sbjct: 362 ALNNNFEAEGQTI-TMPKETLTNNSLTIAVSPDL 394

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 91.7 bits (228), Expect = 2e-19
 Identities = 79/468 (16%), Positives = 132/468 (28%), Gaps = 51/468 (10%)

Query: 540  LRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNAL 599
                      +     +       L  LD   ++      +E    L+ LT    + N +
Sbjct: 20   FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEK---LTGLTKLICTSNNI 76

Query: 600  DGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNL 659
              ++         L +L   +N+LT  +          L  L    N L     S     
Sbjct: 77   T-TLD--LSQNTNLTYLACDSNKLT-NLDVT---PLTKLTYLNCDTNKLTKLDVS---QN 126

Query: 660  TNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNH 719
              L +L    N    EI   +S  + L  L    N    K+   +   T L  +    N 
Sbjct: 127  PLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNK 181

Query: 720  IEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNC 779
            I     L+  Q ++L  L+   NNI+  L      + +  +  S N    +L E      
Sbjct: 182  ITE---LDVSQNKLLNRLNCDTNNIT-KLDLN-QNIQLTFLDCSSN----KLTEIDVTPL 232

Query: 780  LTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNN 839
              L   D S N L   +   V  LS+L+ L     +L     I L    QL         
Sbjct: 233  TQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDLLE---IDLTHNTQLIYFQAEGCR 286

Query: 840  LHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTY 899
                +     NT L+      + +   + S           +   L         +T   
Sbjct: 287  KIKELDVT-HNTQLYLLDCQAAGITELDLS-----------QNPKLVYLYLNNTELTELD 334

Query: 900  QGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLD 959
                  L S L      +       +G +  +     +          T +N     ++ 
Sbjct: 335  VSHNTKLKS-LSCVNAHIQD-FSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVS 391

Query: 960  LSYNKLSW---KIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFN 1004
                        I      +   A  ++ + NLS   P     F + N
Sbjct: 392  PDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSEN 439

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 88.2 bits (219), Expect = 3e-18
 Identities = 67/435 (15%), Positives = 122/435 (28%), Gaps = 74/435 (17%)

Query: 534 LENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFN 593
           +E  T L +L   ++++     L +  +  L  L    N    ++ +     L++LT  N
Sbjct: 60  IEKLTGLTKLICTSNNITT---LDLSQNTNLTYLACDSNKLT-NLDV---TPLTKLTYLN 112

Query: 594 ISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMF 653
              N L             L +L+ + N LT EI          L  L    N       
Sbjct: 113 CDTNKL---TKLDVSQNPLLTYLNCARNTLT-EIDVS---HNTQLTELDCHLNKKIT--K 163

Query: 654 SRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHI 713
                 T L  L    N         +S+   L  L    N+++ K+   L     L  +
Sbjct: 164 LDVTPQTQLTTLDCSFNKITEL---DVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFL 217

Query: 714 IMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKE 773
               N +     ++   L  L   D S N ++  L        +  +H  +      L E
Sbjct: 218 DCSSNKLTE---IDVTPLTQLTYFDCSVNPLT-ELDVS-TLSKLTTLHCIQT----DLLE 268

Query: 774 GTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLL 833
               +   L+            +   V   +QL  L      +     + L +  +L  L
Sbjct: 269 IDLTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYL 323

Query: 834 DLSNNNLHGHIPSCFDN-TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTT 892
            L+N  L     S      +L     +                                 
Sbjct: 324 YLNNTELTELDVSHNTKLKSLSCVNAHIQDFSSVGKI----------------------- 360

Query: 893 KSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNL 952
                         L+    +  + I  +P +      + T+ +S + L           
Sbjct: 361 ------------PALNNNFEAEGQTI-TMPKETLTNNSL-TIAVSPDLLDQFGNPMNIEP 406

Query: 953 RNIESLDLSYNKLSW 967
            +    D + N ++W
Sbjct: 407 GDGGVYDQATNTITW 421

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 78.6 bits (194), Expect = 3e-15
 Identities = 62/385 (16%), Positives = 118/385 (30%), Gaps = 80/385 (20%)

Query: 97  FTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLT 156
            +    L  L+   N +        ++ +S  + L  L+   N         +   + LT
Sbjct: 123 VSQNPLLTYLNCARNTL------TEID-VSHNTQLTELDCHLN--KKITKLDVTPQTQLT 173

Query: 157 SLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGN 216
           +LD S N++   +D+ +      L +LN   N I K  +++          L   D S N
Sbjct: 174 TLDCSFNKIT-ELDVSQNKL---LNRLNCDTNNITKLDLNQ-------NIQLTFLDCSSN 222

Query: 217 LFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQAC 276
                    +  L+ L       N L   +DV    +LS L  L     ++   ++    
Sbjct: 223 KLTE---IDVTPLTQLTYFDCSVNPLT-ELDVS---TLSKLTTLHCIQTDLLEIDLTH-N 274

Query: 277 SGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLK 336
           + L         ++   D +           L  LD      TE                
Sbjct: 275 TQLIYFQAEGCRKIKELDVTHN-------TQLYLLDCQAAGITE---------------- 311

Query: 337 ELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMAD 396
                     L+ S         P + YL L+N         LD  +     L+ L   +
Sbjct: 312 ----------LDLSQN-------PKLVYLYLNN----TELTELD--VSHNTKLKSLSCVN 348

Query: 397 NDLRGSLPWCLANMTSLRILDVSSNQLI----GSISSSPLIHLTSIEDLILSDNHFQIPI 452
             ++      +  + +L     +  Q I     +++++ L    S + L    N   I  
Sbjct: 349 AHIQ-DFS-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEP 406

Query: 453 SLEPLFNHSRLKIFDAENNEINAEI 477
               +++ +   I     +  N  +
Sbjct: 407 GDGGVYDQATNTITWENLSTDNPAV 431

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 72.0 bits (177), Expect = 4e-13
 Identities = 60/310 (19%), Positives = 96/310 (30%), Gaps = 62/310 (20%)

Query: 658 NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPK 717
           N  + +    E          S  + ++L  L   N+S++      +  LT L  +I   
Sbjct: 19  NFASEVAAAFEMQAT---DTISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTS 73

Query: 718 NHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFF 777
           N+I     L+  Q   L  L    N ++ +L        +  ++   N    +L +    
Sbjct: 74  NNITT---LDLSQNTNLTYLACDSNKLT-NLD-VTPLTKLTYLNCDTN----KLTKLDVS 124

Query: 778 NCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSN 837
               L  L+ + N L   I   V   +QL+ L    N       + +    QL  LD S 
Sbjct: 125 QNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKIT--KLDVTPQTQLTTLDCSF 179

Query: 838 NNLHGHIPSCFDN-TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSIT 896
           N +     S       L+   NN                         +   D       
Sbjct: 180 NKITELDVSQNKLLNRLNCDTNN-------------------------ITKLDLNQ---- 210

Query: 897 YTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIE 956
                     L+ LD S N+L   I   +  LT++   + S N L     ST S L    
Sbjct: 211 -------NIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLTELDVSTLSKL---T 257

Query: 957 SLDLSYNKLS 966
           +L      L 
Sbjct: 258 TLHCIQTDLL 267

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  103 bits (258), Expect = 4e-23
 Identities = 93/491 (18%), Positives = 165/491 (33%), Gaps = 79/491 (16%)

Query: 101 QQLESLDLRDNDIAGCVENEGLERLSR-LSNLKMLNLVGNLFNN----SILSSLARLSSL 155
             ++SLD++  ++     +     L   L   +++ L            I S+L    +L
Sbjct: 3   LDIQSLDIQCEEL----SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPAL 58

Query: 156 TSLDLSANRLKGSIDIKEL-DSLRD----LEKLNIGRNMIDKFVVSKGPKRLSRLNNLKV 210
             L+L +N L G + +  +   L+     ++KL++    +           L  L  L+ 
Sbjct: 59  AELNLRSNEL-GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQE 117

Query: 211 FDLSGNLFNNSILSSLARL-----SSLRSLLLYDNRL--EGSIDV-KEFDSLSNLEELDM 262
             LS NL  ++ L  L          L  L L    L       +     +  + +EL +
Sbjct: 118 LHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 177

Query: 263 SYNEIDNFEVPQACSGLR----KLSYLHLLRVGIRD--GSKLLQSMGSFPSLNTLDLSYN 316
           S N+I+   V   C GL+    +L  L L   G+       L   + S  SL  L L  N
Sbjct: 178 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 237

Query: 317 NFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNS 376
                                   D     L    L         ++ L +    ++   
Sbjct: 238 KLG---------------------DVGMAELCPGLLH----PSSRLRTLWIWECGITAKG 272

Query: 377 -RTLDQGLCPLVHLQELHMADNDLRGSLPWCLANM-----TSLRILDVSSNQLIGSIS-- 428
              L + L     L+EL +A N+L       L          L  L V S     +    
Sbjct: 273 CGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCS 331

Query: 429 --SSPLIHLTSIEDLILSDNHFQ----IPISLEPLFNHSRLKIFDAENNEINAEIIE--S 480
             SS L     + +L +S+N  +      +        S L++    + +++       +
Sbjct: 332 HFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA 391

Query: 481 HSLTTPNFQLQSLLLSS---GYRDGITFPKFL-YNQHDLEYVRLSHIKMNEEFPNWL--- 533
            +L   N  L+ L LS+   G    +   + +      LE + L  I  +EE  + L   
Sbjct: 392 ATLLA-NHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 450

Query: 534 LENNTKLRQLS 544
            ++   LR +S
Sbjct: 451 EKDKPSLRVIS 461

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  101 bits (253), Expect = 2e-22
 Identities = 80/431 (18%), Positives = 153/431 (35%), Gaps = 77/431 (17%)

Query: 94  ASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRL-----SNLKMLNLVGNLFNN----S 144
           +S       L  L+LR N++     + G+  + +        ++ L+L            
Sbjct: 49  SSALRVNPALAELNLRSNEL----GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 104

Query: 145 ILSSLARLSSLTSLDLSANRLKGSIDIKEL-DSLRD----LEKLNIGRNMIDKFVVSKGP 199
           + S+L  L +L  L LS N L G   ++ L + L D    LEKL +    +         
Sbjct: 105 LSSTLRTLPTLQELHLSDNLL-GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163

Query: 200 KRLSRLNNLKVFDLSGNLFNNSILSSLARL-----SSLRSLLLYDNRL--EGSIDVKE-F 251
             L    + K   +S N  N + +  L +        L +L L    +  +   D+    
Sbjct: 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV 223

Query: 252 DSLSNLEELDMSYNEIDNFEVPQACSGLRK----LSYLHLLRVGIRD--GSKLLQSMGSF 305
            S ++L EL +  N++ +  + + C GL      L  L +   GI       L + + + 
Sbjct: 224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK 283

Query: 306 PSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYL 365
            SL  L L+ N                        D+    L     + + E    ++ L
Sbjct: 284 ESLKELSLAGNELG---------------------DEGARLL----CETLLEPGCQLESL 318

Query: 366 SLSNSSVSNNS-RTLDQGLCPLVHLQELHMADNDLRGSLPWCLA-----NMTSLRILDVS 419
            + + S +          L     L EL +++N L  +    L        + LR+L ++
Sbjct: 319 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLA 378

Query: 420 SNQL----IGSISSSPLIHLTSIEDLILSDNHF------QIPISLEPLFNHSRLKIFDAE 469
              +      S++++ L+   S+ +L LS+N        Q+  S+        L+     
Sbjct: 379 DCDVSDSSCSSLAAT-LLANHSLRELDLSNNCLGDAGILQLVESVR--QPGCLLEQLVLY 435

Query: 470 NNEINAEIIES 480
           +   + E+ + 
Sbjct: 436 DIYWSEEMEDR 446

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 94.6 bits (236), Expect = 2e-20
 Identities = 92/486 (18%), Positives = 173/486 (35%), Gaps = 74/486 (15%)

Query: 207 NLKVFDLSGNLFNNSILSSLAR-LSSLRSLLLYDNRLEGSIDVKEFDSL----SNLEELD 261
           +++  D+     +++  + L   L   + + L D  L      K+  S       L EL+
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL-TEARCKDISSALRVNPALAELN 62

Query: 262 MSYNEIDNFEVPQACSGLR----KLSYLHLLRVGIRD-GSKLLQSM-GSFPSLNTLDLSY 315
           +  NE+ +  V     GL+    K+  L L    +   G  +L S   + P+L  L LS 
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 316 NNFTET-VTTTTQGFPH-FKSLKELYMDDARIALNTSFLQIIGE---SMPSIQYLSLSNS 370
           N   +  +    +G       L++L ++   +  + +  + +     + P  + L++SN+
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL--SAASCEPLASVLRAKPDFKELTVSNN 180

Query: 371 SVSNNS-RTLDQGL-CPLVHLQELHMADNDLR----GSLPWCLANMTSLRILDVSSNQL- 423
            ++    R L QGL      L+ L +    +       L   +A+  SLR L + SN+L 
Sbjct: 181 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240

Query: 424 ---IGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLF----NHSRLKIFDAENNEINAE 476
              +  +    L   + +  L + +           L         LK      NE+  E
Sbjct: 241 DVGMAELCPGLLHPSSRLRTLWIWECGIT-AKGCGDLCRVLRAKESLKELSLAGNELGDE 299

Query: 477 IIE--SHSLTTPNFQLQSLLLSS---GYRDGITFPKFLYNQHDLEYVRLSHIKMNEE--- 528
                  +L  P  QL+SL + S          F   L     L  +++S+ ++ +    
Sbjct: 300 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 359

Query: 529 -FPNWLLENNTKLRQLSLVNDSL----VGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIG 583
                L +  + LR L L +  +           + ++  LR LD+S N         +G
Sbjct: 360 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC--------LG 411

Query: 584 DILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLAL 643
           D           +  L  S+         L+ L L +   + E           L++L  
Sbjct: 412 D---------AGILQLVESVRQ---PGCLLEQLVLYDIYWSEE-------MEDRLQALEK 452

Query: 644 SNNNLE 649
              +L 
Sbjct: 453 DKPSLR 458

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 82.3 bits (204), Expect = 2e-16
 Identities = 64/363 (17%), Positives = 128/363 (35%), Gaps = 48/363 (13%)

Query: 94  ASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRL-----SNLKMLNLVGNLFNN----S 144
           +S       L+ L L DN +     + GL+ L          L+ L L     +      
Sbjct: 106 SSTLRTLPTLQELHLSDNLL----GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161

Query: 145 ILSSLARLSSLTSLDLSANRLKGSIDIKEL-DSLRD----LEKLNIGRNMIDKFVVSKGP 199
           + S L        L +S N +     ++ L   L+D    LE L +    +         
Sbjct: 162 LASVLRAKPDFKELTVSNNDI-NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC 220

Query: 200 KRLSRLNNLKVFDLSGNLFNNSILSSLAR-----LSSLRSLLLYDNRLEGSIDVKEF--- 251
             ++   +L+   L  N   +  ++ L        S LR+L +++  +  +    +    
Sbjct: 221 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI-TAKGCGDLCRV 279

Query: 252 -DSLSNLEELDMSYNEIDNFEVPQACSGLRK----LSYLHLLRVGIRDGS--KLLQSMGS 304
             +  +L+EL ++ NE+ +      C  L +    L  L +                +  
Sbjct: 280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQ 339

Query: 305 FPSLNTLDLSYNNFTET-VTTTTQGFPHF-KSLKELYMDDARIALNTSFLQIIGESM--- 359
              L  L +S N   +  V    QG       L+ L++ D  ++ ++     +  ++   
Sbjct: 340 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSS--CSSLAATLLAN 397

Query: 360 PSIQYLSLSNSSVSNN-SRTLDQGL-CPLVHLQELHMADNDLR----GSLPWCLANMTSL 413
            S++ L LSN+ + +     L + +  P   L++L + D          L     +  SL
Sbjct: 398 HSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSL 457

Query: 414 RIL 416
           R++
Sbjct: 458 RVI 460

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 80.8 bits (200), Expect = 6e-16
 Identities = 90/480 (18%), Positives = 157/480 (32%), Gaps = 108/480 (22%)

Query: 255 SNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGS--KLLQSMGSFPSLNTLD 312
            +++ LD+   E+ +    +    L++   + L   G+ +     +  ++   P+L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 313 LSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSV 372
           L  N   +              +  +             LQ +      IQ LSL N  +
Sbjct: 63  LRSNELGD------------VGVHCV-------------LQGLQTPSCKIQKLSLQNCCL 97

Query: 373 SNNS-RTLDQGLCPLVHLQELHMADNDLRGSLPWCLANM-----TSLRILDVSSNQLIGS 426
           +      L   L  L  LQELH++DN L  +    L          L  L +     + +
Sbjct: 98  TGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSA 156

Query: 427 IS----SSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHS 482
            S    +S L      ++L +S+N                        NE    ++    
Sbjct: 157 ASCEPLASVLRAKPDFKELTVSNNDI----------------------NEAGVRVL-CQG 193

Query: 483 LTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQ 542
           L     QL++L L S    G+T               L  I          + +   LR+
Sbjct: 194 LKDSPCQLEALKLESC---GVT---------SDNCRDLCGI----------VASKASLRE 231

Query: 543 LSLVNDSL--VGPFRL---PIHSHKQLRLLDVSKNNFQGHIPLEIGDIL---SRLTVFNI 594
           L+L ++ L  VG   L    +H   +LR L + +         ++  +L     L   ++
Sbjct: 232 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSL 291

Query: 595 SMNALDGS----IPSSFGNMNF-LQFLDLSNNQLTGEIPEHLA---MGCVSLRSLALSNN 646
           + N L       +  +       L+ L + +   T     H +        L  L +SNN
Sbjct: 292 AGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN 351

Query: 647 NLEG---HMFSR--NFNLTNLIWLQLEGNHF----VGEIPQSLSKCSSLQGLFLSNNSLS 697
            LE        +      + L  L L            +  +L    SL+ L LSNN L 
Sbjct: 352 RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 79.6 bits (197), Expect = 1e-15
 Identities = 77/467 (16%), Positives = 156/467 (33%), Gaps = 83/467 (17%)

Query: 333 KSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNS-RTLDQGLCPLVHLQE 391
             ++ L +    +  + +    +   +   Q + L +  ++    + +   L     L E
Sbjct: 3   LDIQSLDIQCEEL--SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 60

Query: 392 LHMADNDLRGSLPWCLANM-----TSLRILDVSSNQL----IGSISSSPLIHLTSIEDLI 442
           L++  N+L      C+          ++ L + +  L     G +SS+ L  L ++++L 
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST-LRTLPTLQELH 119

Query: 443 LSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSS---GY 499
           LSDN                         +   +++    L  P  +L+ L L       
Sbjct: 120 LSDNLLG----------------------DAGLQLL-CEGLLDPQCRLEKLQLEYCSLSA 156

Query: 500 RDGITFPKFLYNQHDLEYVRLSHIKMNEE----FPNWLLENNTKLRQLSLVNDSL----V 551
                    L  + D + + +S+  +NE         L ++  +L  L L +  +     
Sbjct: 157 ASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC 216

Query: 552 GPFRLPIHSHKQLRLLDVSKNNFQG----HIPLEIGDILSRLTVFNISMNALD----GSI 603
                 + S   LR L +  N         +   +    SRL    I    +     G +
Sbjct: 217 RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL 276

Query: 604 PSSFGNMNFLQFLDLSNNQLTGE----IPEHLAMGCVSLRSLALSNNNLE-------GHM 652
                    L+ L L+ N+L  E    + E L      L SL + + +           +
Sbjct: 277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV 336

Query: 653 FSRNFNLTNLIWLQLEGNHFVGEIPQSLSK-----CSSLQGLFLSNNSLSGK----IPRW 703
            ++N     L+ LQ+  N       + L +      S L+ L+L++  +S      +   
Sbjct: 337 LAQN---RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT 393

Query: 704 LGNLTVLRHIIMPKNHIEGPIPLEFCQL-----RILQILDISDNNIS 745
           L     LR + +  N +     L+  +       +L+ L + D   S
Sbjct: 394 LLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 73.8 bits (182), Expect = 1e-13
 Identities = 82/488 (16%), Positives = 141/488 (28%), Gaps = 109/488 (22%)

Query: 411 TSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLF----NHSRLKIF 466
             ++ LD+   +L  +  +  L  L   + + L D         + +      +  L   
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLT-EARCKDISSALRVNPALAEL 61

Query: 467 DAENNEINAEIIE--SHSLTTPNFQLQSLLLSS---GYRDGITFPKFLYNQHDLEYVRLS 521
           +  +NE+    +      L TP+ ++Q L L +              L     L+ + LS
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 522 HIKMNEE----FPNWLLENNTKLRQLSLVNDSL----VGPFRLPIHSHKQLRLLDVSKNN 573
              + +         LL+   +L +L L   SL      P    + +    + L VS N+
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181

Query: 574 FQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLA- 632
                   +   L                      +   L+ L L +  +T +    L  
Sbjct: 182 INEAGVRVLCQGLKD--------------------SPCQLEALKLESCGVTSDNCRDLCG 221

Query: 633 --MGCVSLRSLALSNNNL--EGHMF---SRNFNLTNLIWLQLEGNHF----VGEIPQSLS 681
                 SLR LAL +N L   G            + L  L +          G++ + L 
Sbjct: 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR 281

Query: 682 KCSSLQGLFLSNNSLSGKIPRWLGNL-----TVLRHIIMPKNHIEGPIPLEFCQ------ 730
              SL+ L L+ N L  +  R L          L  + +             C       
Sbjct: 282 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA----ACCSHFSSVL 337

Query: 731 --LRILQILDISDNNISGS----------LPSCYDFVCIEQVHLSKNMLHGQLKEGTFF- 777
              R L  L IS+N +  +           P       +  + L+   +           
Sbjct: 338 AQNRFLLELQISNNRLEDAGVRELCQGLGQPGS----VLRVLWLADCDVSD---SSCSSL 390

Query: 778 -----NCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQL 832
                   +L  LDLS N L         G+ QL    +                  L+ 
Sbjct: 391 AATLLANHSLRELDLSNNCLG------DAGILQLV-ESVRQPG------------CLLEQ 431

Query: 833 LDLSNNNL 840
           L L +   
Sbjct: 432 LVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 70.0 bits (172), Expect = 2e-12
 Identities = 76/454 (16%), Positives = 139/454 (30%), Gaps = 94/454 (20%)

Query: 562 KQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALD----GSIPSSFGNMNFLQFLD 617
             ++ LD+           E+  +L +  V  +    L       I S+      L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 618 LSNNQLTGE----IPEHLAMGCVSLRSLALSNNNLE-------GHMFSRNFNLTNLIWLQ 666
           L +N+L       + + L      ++ L+L N  L                    L  L 
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTL---PTLQELH 119

Query: 667 LEGNHFVGEIPQSLSK-----CSSLQGLFLSNNSLSGK----IPRWLGNLTVLRHIIMPK 717
           L  N       Q L +        L+ L L   SLS      +   L      + + +  
Sbjct: 120 LSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 179

Query: 718 NHIEGPIPLEFCQL-----RILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLK 772
           N I        CQ        L+ L +    ++    +C D   I    ++         
Sbjct: 180 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD--NCRDLCGI----VASKA------ 227

Query: 773 EGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQL 832
                   +L  L L  N L         G+++L   +L  ++             +L+ 
Sbjct: 228 --------SLRELALGSNKLGD------VGMAELCPGLLHPSS-------------RLRT 260

Query: 833 LDLSNNNLH----GHIPSCF-DNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILES 887
           L +    +     G +        +L E    G+ L       +    ++   +   LES
Sbjct: 261 LWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQ---LES 317

Query: 888 FDFTTKSITYTYQGRVPSLLSG------LDLSCNRLIGHIPPQIG-----NLTKIQTLNL 936
               + S T        S+L+       L +S NRL      ++        + ++ L L
Sbjct: 318 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL 377

Query: 937 SHNNL----AGPIPSTFSNLRNIESLDLSYNKLS 966
           +  ++       + +T     ++  LDLS N L 
Sbjct: 378 ADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 93.9 bits (234), Expect = 4e-21
 Identities = 53/240 (22%), Positives = 80/240 (33%), Gaps = 38/240 (15%)

Query: 584 DILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLAL 643
            I +      +  N +     +SF     L  L L +N L   I      G   L  L L
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDL 87

Query: 644 SNNN----LEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQ-SLSKCSSLQGLFLSNNSLSG 698
           S+N     ++   F     L  L  L L+      E+        ++LQ L+L +N+L  
Sbjct: 88  SDNAQLRSVDPATFH---GLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ- 142

Query: 699 KIP-RWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCI 757
            +P     +L  L H+ +  N I       F  L  L  L +  N ++            
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA------------ 190

Query: 758 EQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNL 816
                        +    F +   LM L L  N+L+  +P      L  L YL L  N  
Sbjct: 191 ------------HVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 93.5 bits (233), Expect = 6e-21
 Identities = 49/201 (24%), Positives = 77/201 (38%), Gaps = 20/201 (9%)

Query: 92  LNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSL-- 149
           + A+ F   + L  L L  N +A  ++      L+ L  L       +L +N+ L S+  
Sbjct: 47  VPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQL-------DLSDNAQLRSVDP 98

Query: 150 ---ARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLN 206
                L  L +L L    L+  +       L  L+ L +  N +    +         L 
Sbjct: 99  ATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ--ALPDDT--FRDLG 153

Query: 207 NLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNE 266
           NL    L GN  ++    +   L SL  LLL+ NR+   +    F  L  L  L +  N 
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANN 212

Query: 267 IDNFEVPQACSGLRKLSYLHL 287
           +      +A + LR L YL L
Sbjct: 213 LSALP-TEALAPLRALQYLRL 232

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 92.0 bits (229), Expect = 2e-20
 Identities = 53/246 (21%), Positives = 84/246 (34%), Gaps = 38/246 (15%)

Query: 602 SIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNL---EGHMFSRNFN 658
           ++P         Q + L  N+++  +P      C +L  L L +N L   +   F+    
Sbjct: 25  AVPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFT---G 78

Query: 659 LTNLIWLQLEGNHFVGEIPQS-LSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPK 717
           L  L  L L  N  +  +  +       L  L L    L    P     L  L+++ +  
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138

Query: 718 NHIEGPIPLE-FCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTF 776
           N ++  +P + F  L  L  L +  N IS                         + E  F
Sbjct: 139 NALQA-LPDDTFRDLGNLTHLFLHGNRIS------------------------SVPERAF 173

Query: 777 FNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDL 835
               +L  L L  N +  ++       L +L  L L  NNL       L  L  LQ L L
Sbjct: 174 RGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 232

Query: 836 SNNNLH 841
           ++N   
Sbjct: 233 NDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 91.6 bits (228), Expect = 3e-20
 Identities = 53/218 (24%), Positives = 85/218 (38%), Gaps = 19/218 (8%)

Query: 129 SNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRN 188
           +  + + L GN  ++   +S     +LT L L +N L   ID      L  LE+L++  N
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDN 90

Query: 189 MIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDV 248
              + V    P     L  L    L               L++L+ L L DN L+ ++  
Sbjct: 91  AQLRSV---DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPD 146

Query: 249 KEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQ-SMGSF-- 305
             F  L NL  L +  N I +    +A  GL  L  L L        +++      +F  
Sbjct: 147 DTFRDLGNLTHLFLHGNRISSVP-ERAFRGLHSLDRLLL------HQNRVAHVHPHAFRD 199

Query: 306 -PSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDD 342
              L TL L  NN +      T+     ++L+ L ++D
Sbjct: 200 LGRLMTLYLFANNLS---ALPTEALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 84.3 bits (209), Expect = 8e-18
 Identities = 48/211 (22%), Positives = 81/211 (38%), Gaps = 12/211 (5%)

Query: 564 LRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQL 623
            + + +  N    H+P         LT+  +  N L     ++F  +  L+ LDLS+N  
Sbjct: 34  SQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 624 TGEIPEHLAMGCVSLRSLALSNNNL---EGHMFSRNFNLTNLIWLQLEGNHFVGEIP-QS 679
              +      G   L +L L    L      +F     L  L +L L+ N     +P  +
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR---GLAALQYLYLQDNALQ-ALPDDT 148

Query: 680 LSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDI 739
                +L  LFL  N +S    R    L  L  +++ +N +    P  F  L  L  L +
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 740 SDNNISGSLPSC--YDFVCIEQVHLSKNMLH 768
             NN+S +LP+        ++ + L+ N   
Sbjct: 209 FANNLS-ALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 82.3 bits (204), Expect = 3e-17
 Identities = 48/198 (24%), Positives = 75/198 (37%), Gaps = 11/198 (5%)

Query: 675 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRIL 734
            +P  +   ++ Q +FL  N +S            L  + +  N +       F  L +L
Sbjct: 25  AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 735 QILDISDNNISGSLPSC--YDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHL 792
           + LD+SDN    S+     +    +  +HL +  L  +L  G F     L  L L  N L
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNAL 141

Query: 793 NGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN- 850
              +PD     L  L++L L  N +          L+ L  L L  N +    P  F + 
Sbjct: 142 Q-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200

Query: 851 ---TTLHERYNNGSSLQP 865
               TL+   NN S+L  
Sbjct: 201 GRLMTLYLFANNLSALPT 218

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 79.3 bits (196), Expect = 3e-16
 Identities = 56/246 (22%), Positives = 80/246 (32%), Gaps = 39/246 (15%)

Query: 178 RDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLL 237
              +++ +  N I                NL +  L  N+      ++   L+ L  L L
Sbjct: 32  AASQRIFLHGNRI----SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87

Query: 238 YDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSK 297
            DN    S+D   F  L  L  L +    +     P    GL  L YL+L          
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG-PGLFRGLAALQYLYL-------QDN 139

Query: 298 LLQSM--GSF---PSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIAL--NTS 350
            LQ++   +F    +L  L L  N  +         F    SL  L +   R+A     +
Sbjct: 140 ALQALPDDTFRDLGNLTHLFLHGNRISSVPERA---FRGLHSLDRLLLHQNRVAHVHPHA 196

Query: 351 FLQIIGESMPSIQYLSLSNSSVSNNSRTLDQG-LCPLVHLQELHMADNDLRGSLPW-CLA 408
           F       +  +  L L      NN   L    L PL  LQ L + DN      PW C  
Sbjct: 197 F-----RDLGRLMTLYLFA----NNLSALPTEALAPLRALQYLRLNDN------PWVCDC 241

Query: 409 NMTSLR 414
               L 
Sbjct: 242 RARPLW 247

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 73.1 bits (180), Expect = 5e-14
 Identities = 47/242 (19%), Positives = 73/242 (30%), Gaps = 42/242 (17%)

Query: 781  TLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNL 840
                + L  N ++            L+ L L  N L          L  L+ LDLS+N  
Sbjct: 33   ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 841  HGHIPS-CFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSI 895
               +    F       TLH        L P                      F       
Sbjct: 93   LRSVDPATFHGLGRLHTLHLDRCGLQELGP--------------------GLFRGLAA-- 130

Query: 896  TYTYQGRVPSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRN 954
                       L  L L  N  +  +P     +L  +  L L  N ++      F  L +
Sbjct: 131  -----------LQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS 178

Query: 955  IESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSY-EGNPF 1013
            ++ L L  N+++   P+   +L  L    +  NNLS  +P  A       +      NP+
Sbjct: 179  LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

Query: 1014 LC 1015
            +C
Sbjct: 238  VC 239

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 65.4 bits (160), Expect = 2e-11
 Identities = 49/290 (16%), Positives = 79/290 (27%), Gaps = 85/290 (29%)

Query: 360 PSIQYLSLSNSSVSNNSRTLDQG-LCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDV 418
            + Q + L      N    +         +L  L +  N L          +  L  LD+
Sbjct: 32  AASQRIFLHG----NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87

Query: 419 SSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEII 478
           S N  + S+  +    L  +  L L     Q    L P        +F            
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ---ELGP-------GLFR----------- 126

Query: 479 ESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNT 538
               L      LQ L L               N        L  +      P+    +  
Sbjct: 127 ---GLA----ALQYLYLQ-------------DNA-------LQAL------PDDTFRDLG 153

Query: 539 KLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNA 598
            L  L L                 ++    V +  F+G         L  L    +  N 
Sbjct: 154 NLTHLFL--------------HGNRIS--SVPERAFRG---------LHSLDRLLLHQNR 188

Query: 599 LDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNL 648
           +    P +F ++  L  L L  N L+  +P        +L+ L L++N  
Sbjct: 189 VAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 60.0 bits (146), Expect = 9e-10
 Identities = 34/200 (17%), Positives = 67/200 (33%), Gaps = 27/200 (13%)

Query: 305 FPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIAL--NTSFLQIIGESMPSI 362
             +   + L  N  +         F   ++L  L++    +A     +F       +  +
Sbjct: 31  PAASQRIFLHGNRIS---HVPAASFRACRNLTILWLHSNVLARIDAAAF-----TGLALL 82

Query: 363 QYLSLSNSSVSNNS-RTLDQG-LCPLVHLQELHMADNDLRGSLPW-CLANMTSLRILDVS 419
           + L LS+    N   R++D      L  L  LH+    L+  L       + +L+ L + 
Sbjct: 83  EQLDLSD----NAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQ 137

Query: 420 SNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEP-LFNH-SRLKIFDAENNEINAEI 477
            N  + ++       L ++  L L  N      S+    F     L       N +    
Sbjct: 138 DNA-LQALPDDTFRDLGNLTHLFLHGNRIS---SVPERAFRGLHSLDRLLLHQNRVAH-- 191

Query: 478 IESHSLTTPNFQLQSLLLSS 497
           +  H+      +L +L L +
Sbjct: 192 VHPHAF-RDLGRLMTLYLFA 210

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 59.2 bits (144), Expect = 2e-09
 Identities = 35/200 (17%), Positives = 58/200 (29%), Gaps = 41/200 (20%)

Query: 804 SQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN----TTLHERYNN 859
           +    + L  N +             L +L L +N L     + F        L    N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 860 G-SSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLI 918
              S+ P                     +F    +             L  L L     +
Sbjct: 92  QLRSVDP--------------------ATFHGLGR-------------LHTLHLDRCG-L 117

Query: 919 GHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELN 977
             + P +   L  +Q L L  N L      TF +L N+  L L  N++S         L+
Sbjct: 118 QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 177

Query: 978 TLAVFSVAYNNLSGKIPERA 997
           +L    +  N ++  +   A
Sbjct: 178 SLDRLLLHQNRVA-HVHPHA 196

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 49.2 bits (118), Expect = 4e-06
 Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 10/100 (10%)

Query: 903 VPSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLS 961
           +P+    + L  NR I H+P         +  L L  N LA    + F+ L  +E LDLS
Sbjct: 30  IPAASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 962 YNKLSWKIP----YQLVELNTLAVFSVAYNNLSGKIPERA 997
            N     +     + L  L+TL    +    L  ++    
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTL---HLDRCGLQ-ELGPGL 124

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 93.9 bits (234), Expect = 8e-21
 Identities = 70/368 (19%), Positives = 114/368 (30%), Gaps = 85/368 (23%)

Query: 612 FLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNN---LEGHMFSRNFNLTNLIWLQLE 668
            L+ +  S+  L   +P+ ++        L L NN+   L    F     L +L  L L 
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS---PDTTLLDLQNNDISELRKDDFK---GLQHLYALVLV 86

Query: 669 GNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEF 728
            N       ++ S    LQ L++S N L  +IP  L           P +          
Sbjct: 87  NNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL-----------PSS---------- 124

Query: 729 CQLRILQILDISDNNISGSLP--SCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILD 786
                L  L I DN I   +P         +  + +  N L     E   F+ L L  L 
Sbjct: 125 -----LVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLR 178

Query: 787 LSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPS 846
           +S   L   IP  +     L+ L L HN ++      L R ++L  L L +N +      
Sbjct: 179 ISEAKLT-GIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENG 235

Query: 847 CFDN-TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPS 905
                 TL E + + + L         +                                
Sbjct: 236 SLSFLPTLRELHLDNNKLSRVPAGLPDL-------------------------------K 264

Query: 906 LLSGLDLSCNRLIGHIPPQI-------GNLTKIQTLNLSHNNLAGPI--PSTFSNLRNIE 956
           LL  + L  N  I  +                   ++L +N +      P+TF  + +  
Sbjct: 265 LLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRL 323

Query: 957 SLDLSYNK 964
           ++     K
Sbjct: 324 AIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 92.0 bits (229), Expect = 4e-20
 Identities = 61/335 (18%), Positives = 104/335 (31%), Gaps = 59/335 (17%)

Query: 50  LDWVDDEGATDC-----CQWERVSCNNTM---------GRVVVLDLSQTHRGEYWYLNAS 95
           LD +    +  C     C    V C++               +LDL      E   L   
Sbjct: 16  LDSLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISE---LRKD 72

Query: 96  LFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGN---------------- 139
            F   Q L +L L +N I+  +  +     S L  L+ L +  N                
Sbjct: 73  DFKGLQHLYALVLVNNKISK-IHEKAF---SPLRKLQKLYISKNHLVEIPPNLPSSLVEL 128

Query: 140 -LFNNSILS----SLARLSSLTSLDLSANRLK-GSIDIKELDSLRDLEKLNIGRNMIDKF 193
            + +N I        + L ++  +++  N L+    +    D L+ L  L I    +   
Sbjct: 129 RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTG- 186

Query: 194 VVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDS 253
           +    P+ L+ L       L  N      L  L R S L  L L  N++   I+      
Sbjct: 187 IPKDLPETLNEL------HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSF 239

Query: 254 LSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHL----LRVGIRDGSKLLQSMGSFPSLN 309
           L  L EL +  N++    VP     L+ L  ++L    +     +    +         N
Sbjct: 240 LPTLRELHLDNNKLS--RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYN 297

Query: 310 TLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDAR 344
            + L  N            F        +   + +
Sbjct: 298 GISLFNNPVPYW-EVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 87.0 bits (216), Expect = 2e-18
 Identities = 63/352 (17%), Positives = 112/352 (31%), Gaps = 85/352 (24%)

Query: 153 SSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFD 212
              T LDL  N +   +   +   L+ L  L +  N I K       K  S L  L+   
Sbjct: 54  PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKI----HEKAFSPLRKLQKLY 108

Query: 213 LSGNLFNNSILSSLAR--LSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNF 270
           +S N      L  +     SSL  L ++DNR+   +    F  L N+  ++M  N ++N 
Sbjct: 109 ISKNH-----LVEIPPNLPSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENS 162

Query: 271 EV-PQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGF 329
              P A  GL                            LN L +S    T          
Sbjct: 163 GFEPGAFDGL---------------------------KLNYLRISEAKLTGIPKDL---- 191

Query: 330 PHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHL 389
              ++L EL++D  +I               +I+   L                     L
Sbjct: 192 --PETLNELHLDHNKIQ--------------AIELEDLLR----------------YSKL 219

Query: 390 QELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQ 449
             L +  N +R      L+ + +LR L + +N+L   + +  L  L  ++ + L  N+  
Sbjct: 220 YRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAG-LPDLKLLQVVYLHTNNIT 277

Query: 450 -IPI----SLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLS 496
            + +     +      +        NN +    ++  +         ++   
Sbjct: 278 KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF-RCVTDRLAIQFG 328

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 87.0 bits (216), Expect = 2e-18
 Identities = 47/256 (18%), Positives = 85/256 (33%), Gaps = 30/256 (11%)

Query: 562 KQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNN 621
           ++L+ L +SKN+    IP    ++ S L    I  N +       F  +  +  +++  N
Sbjct: 102 RKLQKLYISKNHLV-EIP---PNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN 157

Query: 622 QLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQ-SL 680
            L     E  A   + L  L +S   L   +         L  L L+ N     I    L
Sbjct: 158 PLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLP--ETLNELHLDHNKIQ-AIELEDL 213

Query: 681 SKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDIS 740
            + S L  L L +N +       L  L  LR + +  N +   +P     L++LQ++ + 
Sbjct: 214 LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLH 272

Query: 741 DNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHL-NGNIPDR 799
            NNI+                +  N        G          + L  N +    +   
Sbjct: 273 TNNIT---------------KVGVNDFCPV---GFGVKRAYYNGISLFNNPVPYWEVQPA 314

Query: 800 V-DGLSQLSYLILAHN 814
               ++    +   + 
Sbjct: 315 TFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 82.8 bits (205), Expect = 5e-17
 Identities = 53/247 (21%), Positives = 93/247 (37%), Gaps = 25/247 (10%)

Query: 757 IEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNN 815
              + L  N +  +L++  F     L  L L  N ++  I ++    L +L  L ++ N+
Sbjct: 56  TTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNH 113

Query: 816 LEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN----TTLHERYNNGSSLQPFETSFV 871
           L  E+P  L   + L  L + +N +       F        +    N   +      +F 
Sbjct: 114 LV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170

Query: 872 IMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQI-GNLTK 930
            +           L     +   +T      +P  L+ L L  N+ I  I  +     +K
Sbjct: 171 GLK----------LNYLRISEAKLT-GIPKDLPETLNELHLDHNK-IQAIELEDLLRYSK 218

Query: 931 IQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLS 990
           +  L L HN +      + S L  +  L L  NKLS ++P  L +L  L V  +  NN++
Sbjct: 219 LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277

Query: 991 GKIPERA 997
            K+    
Sbjct: 278 -KVGVND 283

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 65.4 bits (160), Expect = 3e-11
 Identities = 61/331 (18%), Positives = 112/331 (33%), Gaps = 65/331 (19%)

Query: 305 FPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIAL--NTSFLQIIGESMPSI 362
            P    LDL  N+ +E        F   + L  L + + +I+     +F       +  +
Sbjct: 53  SPDTTLLDLQNNDISEL---RKDDFKGLQHLYALVLVNNKISKIHEKAF-----SPLRKL 104

Query: 363 QYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQ 422
           Q L +S     N+   +   L     L EL + DN +R       + + ++  +++  N 
Sbjct: 105 QKLYISK----NHLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP 158

Query: 423 LIGSISSSPLIHLTSIEDLILSDNHF-QIPISLEPLFNHSRLKIFDAENNEINAEIIESH 481
           L  S           +  L +S+     IP  L        L     ++N+I  + IE  
Sbjct: 159 LENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL-----PETLNELHLDHNKI--QAIELE 211

Query: 482 SLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLR 541
            L     +L  L L              +NQ       +  I       N  L     LR
Sbjct: 212 DLL-RYSKLYRLGLG-------------HNQ-------IRMI------ENGSLSFLPTLR 244

Query: 542 QLSLVNDSLVGPFRLP--IHSHKQLRLLDVSKNNFQGHIP------LEIGDILSRLTVFN 593
           +L L N+ L    R+P  +   K L+++ +  NN    +       +  G   +     +
Sbjct: 245 ELHLDNNKLS---RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGIS 300

Query: 594 ISMNALDGSI--PSSFGNMNFLQFLDLSNNQ 622
           +  N +      P++F  +     +   N +
Sbjct: 301 LFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 45.4 bits (108), Expect = 7e-05
 Identities = 41/221 (18%), Positives = 66/221 (29%), Gaps = 52/221 (23%)

Query: 784 ILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGH 843
           ++  S   L   +P  +      + L L +N++          L  L  L L NN +   
Sbjct: 37  VVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI 93

Query: 844 IPSCFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTY 899
               F        L+   N+   + P                                  
Sbjct: 94  HEKAFSPLRKLQKLYISKNHLVEIPP---------------------------------- 119

Query: 900 QGRVPSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPI--PSTFSNLRNIE 956
              +PS L  L +  NR I  +P  +   L  +  + +  N L      P  F  L  + 
Sbjct: 120 --NLPSSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLN 175

Query: 957 SLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERA 997
            L +S  KL+  IP  L    TL    + +N +   I    
Sbjct: 176 YLRISEAKLT-GIPKDL--PETLNELHLDHNKIQ-AIELED 212

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 93.0 bits (231), Expect = 1e-20
 Identities = 62/271 (22%), Positives = 93/271 (34%), Gaps = 25/271 (9%)

Query: 564 LRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQL 623
           L+ +D   +  Q    ++    L RLTV    + +           ++ LQ L L N ++
Sbjct: 49  LKRVDTEADLGQFTDIIKSLS-LKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEV 107

Query: 624 TGEIP-EHLAMGCVSLRSLALSNNNLEGHMFS----RNFNLTNLIWLQLEGNHFVGEIPQ 678
           TG  P   L      L  L L N +           + +    L  L +   H +    +
Sbjct: 108 TGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCE 167

Query: 679 SLSKCSSLQGLFLSNNSLSGKI-------PRWLGNLTVLRHIIMPKNHIEGPIPLEFCQL 731
            +    +L  L LS+N   G+        P     L VL           G         
Sbjct: 168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR 227

Query: 732 RILQILDISDNNISGSLP--SCYDFVCIEQVHLSKNMLHGQLKEGTFFNCL--TLMILDL 787
             LQ LD+S N++  +    SC     +  ++LS   L            L   L +LDL
Sbjct: 228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK------QVPKGLPAKLSVLDL 281

Query: 788 SYNHLNGNIPDRVDGLSQLSYLILAHNNLEG 818
           SYN L+   P   D L Q+  L L  N    
Sbjct: 282 SYNRLDR-NPS-PDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 86.5 bits (214), Expect = 2e-18
 Identities = 61/304 (20%), Positives = 88/304 (28%), Gaps = 17/304 (5%)

Query: 406 CLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKI 465
           C  N +  +    S+   +G+          S+E L+   +          +     LK 
Sbjct: 13  CSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKR 72

Query: 466 FDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQH-DLEYVRLSHIK 524
                  I + I+           LQ L L +    G   P  L     DL  + L ++ 
Sbjct: 73  LTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS 132

Query: 525 MNEEFPNWLLE----NNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPL 580
                  WL E        L+ LS+     +      +     L  LD+S N   G   L
Sbjct: 133 WAT-RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191

Query: 581 EIGDI------LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMG 634
                      L  L + N  M    G   +       LQ LDLS+N L           
Sbjct: 192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251

Query: 635 CVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNN 694
              L SL LS   L+  +         L  L L  N      P    +   +  L L  N
Sbjct: 252 PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRL-DRNPSPD-ELPQVGNLSLKGN 306

Query: 695 SLSG 698
               
Sbjct: 307 PFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 78.8 bits (194), Expect = 7e-16
 Identities = 48/248 (19%), Positives = 82/248 (33%), Gaps = 18/248 (7%)

Query: 102 QLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLS 161
            L+ L +R   I   +    L  L  +S L+ L L       +    L   +      L+
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLG-ISGLQELTLENLEVTGTAPPPLLEATGPDLNILN 127

Query: 162 ANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSR-LNNLKVFDLSGNLFNN 220
              +  +     L  L+   K  +    I +           R    L   DLS N    
Sbjct: 128 LRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG 187

Query: 221 SILSSLA----RLSSLRSLLLYDNRLEGSIDVKE--FDSLSNLEELDMSYNEIDNFEVPQ 274
                 A    +  +L+ L L +  +E    V      +   L+ LD+S+N + +     
Sbjct: 188 ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP 247

Query: 275 ACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKS 334
           +C    +L+ L+L   G++   K     G    L+ LDLSYN      +           
Sbjct: 248 SCDWPSQLNSLNLSFTGLKQVPK-----GLPAKLSVLDLSYNRLDRNPSPD-----ELPQ 297

Query: 335 LKELYMDD 342
           +  L +  
Sbjct: 298 VGNLSLKG 305

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 76.9 bits (189), Expect = 3e-15
 Identities = 56/294 (19%), Positives = 106/294 (36%), Gaps = 11/294 (3%)

Query: 161 SANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNN 220
           SA    G+ D++     R LE L    +            +   L  L V          
Sbjct: 26  SAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRIL 85

Query: 221 SILSSLARLSSLRSLLLYDNRLEGSIDVKEFD-SLSNLEELDMSYNEIDNFEVPQACSGL 279
                +  +S L+ L L +  + G+      + +  +L  L++        +   A    
Sbjct: 86  FGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQ 145

Query: 280 RKLSYLHLLRV-GIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPH-FKSLKE 337
                L +L +      +   + +  FP+L+TLDLS N         +   P  F +L+ 
Sbjct: 146 WLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQV 205

Query: 338 LYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADN 397
           L + +A +   +     +  +   +Q L LS++S+ + +            L  L+++  
Sbjct: 206 LALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS--QLNSLNLSFT 263

Query: 398 DLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIP 451
            L+  +P  L     L +LD+S N+L     +     L  + +L L  N F   
Sbjct: 264 GLK-QVPKGLP--AKLSVLDLSYNRLD---RNPSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 76.5 bits (188), Expect = 4e-15
 Identities = 67/368 (18%), Positives = 105/368 (28%), Gaps = 95/368 (25%)

Query: 592 FNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGH 651
           ++ + N L  +    +G    L++L    +           +  +SL+ L +    +   
Sbjct: 24  WSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSR 83

Query: 652 MFS---RNFNLTNLIWLQLEGNHFVGEIPQSLSKCS--SLQGLFLSNNSLSGKIPRWLGN 706
           +     R   ++ L  L LE     G  P  L + +   L  L L N S +     WL  
Sbjct: 84  ILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAE 142

Query: 707 L-----TVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVH 761
           L       L+ + + + H       +      L  LD+SDN   G               
Sbjct: 143 LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG------------ 190

Query: 762 LSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVP 821
                L   L    F     L +L L    +                         G   
Sbjct: 191 -----LISALCPLKFPT---LQVLALRNAGME---------------------TPSGVCS 221

Query: 822 IQLCRLNQLQLLDLSNNNLHGHIP--SCFDNTTLHE---RYNNGSSLQPFETSFVIMGGM 876
                  QLQ LDLS+N+L       SC   + L+     +     +             
Sbjct: 222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKG---------- 271

Query: 877 DVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNL 936
                                     +P+ LS LDLS NRL     P    L ++  L+L
Sbjct: 272 --------------------------LPAKLSVLDLSYNRL--DRNPSPDELPQVGNLSL 303

Query: 937 SHNNLAGP 944
             N     
Sbjct: 304 KGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 75.3 bits (185), Expect = 1e-14
 Identities = 47/305 (15%), Positives = 82/305 (26%), Gaps = 41/305 (13%)

Query: 102 QLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLS 161
            LE L  R +  A   +   + +   L  L +               +  +S L  L L 
Sbjct: 44  SLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103

Query: 162 ANRLKGSIDIKELD-SLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNN 220
              + G+     L+ +  DL  LN+               +      LKV  ++     N
Sbjct: 104 NLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLN 163

Query: 221 SILSSLARLSSLRSLLLYDNRLEGSIDVKE---FDSLSNLEELDMSYNEIDNFEVPQACS 277
                +    +L +L L DN   G   +           L+ L +    ++         
Sbjct: 164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS------ 217

Query: 278 GLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKE 337
                                     +   L  LDLS+N+  +              L  
Sbjct: 218 ------------------GVCSALAAARVQLQGLDLSHNSLRDAAGAP--SCDWPSQLNS 257

Query: 338 LYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADN 397
           L +        T   Q+       +  L LS + +  N    +     L  +  L +  N
Sbjct: 258 LNLS------FTGLKQVPKGLPAKLSVLDLSYNRLDRNPSPDE-----LPQVGNLSLKGN 306

Query: 398 DLRGS 402
               S
Sbjct: 307 PFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 74.5 bits (183), Expect = 2e-14
 Identities = 43/225 (19%), Positives = 72/225 (32%), Gaps = 30/225 (13%)

Query: 96  LFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSL 155
           L      L  L+LR+   A         +      LK+L++      N     +    +L
Sbjct: 116 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL 175

Query: 156 TSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSG 215
           ++LDLS N   G   +                        +  P +   L  L + +   
Sbjct: 176 STLDLSDNPELGERGLIS----------------------ALCPLKFPTLQVLALRNAGM 213

Query: 216 NLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQA 275
              +    +  A    L+ L L  N L  +      D  S L  L++S+  +   +VP+ 
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK--QVPKG 271

Query: 276 CSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTE 320
                KLS L L    +       +     P +  L L  N F +
Sbjct: 272 LP--AKLSVLDLSYNRLDRNPSPDE----LPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 73.0 bits (179), Expect = 6e-14
 Identities = 57/296 (19%), Positives = 100/296 (33%), Gaps = 30/296 (10%)

Query: 216 NLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQ- 274
           + FN    + +      RSL     R++   D+ +F     ++ L +    +    +P  
Sbjct: 26  SAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQF--TDIIKSLSLKRLTVRAARIPSR 83

Query: 275 ------ACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQG 328
                    G+  L  L L  + +   +       + P LN L+L   ++        + 
Sbjct: 84  ILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAEL 143

Query: 329 FPHFK-SLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCP-- 385
               K  LK L +  A      +F        P++  L LS++        L   LCP  
Sbjct: 144 QQWLKPGLKVLSIAQAHS---LNFSCEQVRVFPALSTLDLSDNPELGER-GLISALCPLK 199

Query: 386 LVHLQELHMADNDLR---GSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLI 442
              LQ L + +  +    G      A    L+ LD+S N L  +  +      + +  L 
Sbjct: 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259

Query: 443 LSDNHF-QIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSS 497
           LS     Q+P  L       +L + D   N ++        L     Q+ +L L  
Sbjct: 260 LSFTGLKQVPKGLPA-----KLSVLDLSYNRLD-RNPSPDELP----QVGNLSLKG 305

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 72.2 bits (177), Expect = 1e-13
 Identities = 42/171 (24%), Positives = 58/171 (33%), Gaps = 15/171 (8%)

Query: 78  VLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLV 137
           VL ++Q H       +      F  L +LDL DN   G           +   L++L L 
Sbjct: 153 VLSIAQAHSLN---FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALR 209

Query: 138 GNLFN---NSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFV 194
                       +  A    L  LDLS N L+ +      D    L  LN+    + +  
Sbjct: 210 NAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV- 268

Query: 195 VSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGS 245
               PK L     L V DLS N  +     S   L  + +L L  N    S
Sbjct: 269 ----PKGLPA--KLSVLDLSYNRLDR--NPSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 66.5 bits (162), Expect = 8e-12
 Identities = 58/360 (16%), Positives = 103/360 (28%), Gaps = 83/360 (23%)

Query: 640 SLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGK 699
           S        +  ++    +L  L  L+             + K  SL+ L +    +  +
Sbjct: 26  SAFNCLGAADVELYGGGRSLEYL--LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSR 83

Query: 700 IPRW---LGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVC 756
           I      +  ++ L+ + +    + G  P    +     +  ++  N+S +         
Sbjct: 84  ILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-------- 135

Query: 757 IEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNL 816
                         L E   +    L +L ++  H      ++V     LS L L+ N  
Sbjct: 136 ----------RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE 185

Query: 817 EGEVP----IQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVI 872
            GE      +   +   LQ+L L N                        +     ++   
Sbjct: 186 LGERGLISALCPLKFPTLQVLALRN--------------------AGMETPSGVCSALA- 224

Query: 873 MGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQI-GNLTKI 931
                                             L GLDLS N L            +++
Sbjct: 225 -----------------------------AARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255

Query: 932 QTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSG 991
            +LNLS   L        + L     LDLSYN+L  + P    EL  +   S+  N    
Sbjct: 256 NSLNLSFTGLKQVPKGLPAKL---SVLDLSYNRLD-RNP-SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 29/112 (25%), Positives = 41/112 (36%), Gaps = 6/112 (5%)

Query: 69  CNNTMGRVVVLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRL 128
           C      + VL L          + ++L     QL+ LDL  N +       G       
Sbjct: 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA---AGAPSCDWP 252

Query: 129 SNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDL 180
           S L  LNL        +   L   + L+ LDLS NRL  +    EL  + +L
Sbjct: 253 SQLNSLNLSFTGL-KQVPKGL--PAKLSVLDLSYNRLDRNPSPDELPQVGNL 301

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 88.9 bits (221), Expect = 3e-20
 Identities = 34/188 (18%), Positives = 76/188 (40%), Gaps = 21/188 (11%)

Query: 100 FQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLD 159
           F+   +  L  +  A   E +       +++L  + L      +  L+ +    ++  L 
Sbjct: 22  FKAYLNGLLGQSSTANITEAQ-------MNSLTYITLANINVTD--LTGIEYAHNIKDLT 72

Query: 160 LSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFN 219
           ++        +   +  L +LE+L I    +     S     LS L +L + D+S +  +
Sbjct: 73  INNIHAT---NYNPISGLSNLERLRIMGKDV----TSDKIPNLSGLTSLTLLDISHSAHD 125

Query: 220 NSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGL 279
           +SIL+ +  L  + S+ L  N      D+    +L  L+ L++ ++ + ++         
Sbjct: 126 DSILTKINTLPKVNSIDLSYNGAIT--DIMPLKTLPELKSLNIQFDGVHDYR---GIEDF 180

Query: 280 RKLSYLHL 287
            KL+ L+ 
Sbjct: 181 PKLNQLYA 188

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 75.4 bits (186), Expect = 1e-15
 Identities = 27/172 (15%), Positives = 61/172 (35%), Gaps = 39/172 (22%)

Query: 100 FQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLD 159
              ++ L + +              +S LSNL+ L ++G    +  + +L+ L+SLT LD
Sbjct: 65  AHNIKDLTINNIHA------TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118

Query: 160 LSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFN 219
           +S +       + ++++L  +  +++  N                               
Sbjct: 119 ISHSAHD-DSILTKINTLPKVNSIDLSYNG-----------------------------A 148

Query: 220 NSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFE 271
            + +  L  L  L+SL +  + +    D +  +    L +L      I   +
Sbjct: 149 ITDIMPLKTLPELKSLNIQFDGVH---DYRGIEDFPKLNQLYAFSQTIGGKK 197

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 73.5 bits (181), Expect = 6e-15
 Identities = 28/176 (15%), Positives = 67/176 (38%), Gaps = 18/176 (10%)

Query: 301 SMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMP 360
           +     SL  + L+  N T+       G  +  ++K+L +++     N + +      + 
Sbjct: 39  TEAQMNSLTYITLANINVTDL-----TGIEYAHNIKDLTINNIHAT-NYNPI----SGLS 88

Query: 361 SIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSS 420
           +++ L +    V+++       L  L  L  L ++ +    S+   +  +  +  +D+S 
Sbjct: 89  NLERLRIMGKDVTSDKIP---NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSY 145

Query: 421 NQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAE 476
           N  I  I   PL  L  ++ L +  +          + +  +L    A +  I  +
Sbjct: 146 NGAITDI--MPLKTLPELKSLNIQFDGVH---DYRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 70.0 bits (172), Expect = 1e-13
 Identities = 25/161 (15%), Positives = 56/161 (34%), Gaps = 8/161 (4%)

Query: 586 LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSN 645
           ++ LT   ++   +   + +     + ++ L ++N   T      ++ G  +L  L +  
Sbjct: 43  MNSLTYITLANINVT-DL-TGIEYAHNIKDLTINNIHATN--YNPIS-GLSNLERLRIMG 97

Query: 646 NNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLG 705
            ++          LT+L  L +  +     I   ++    +  + LS N     I   L 
Sbjct: 98  KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LK 156

Query: 706 NLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISG 746
            L  L+ + +  + +     +E      L  L      I G
Sbjct: 157 TLPELKSLNIQFDGVHDYRGIE--DFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 27/183 (14%), Positives = 62/183 (33%), Gaps = 31/183 (16%)

Query: 658 NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPK 717
            + +L ++ L   + V ++   +    +++ L ++N   +   P  +  L+ L  + +  
Sbjct: 42  QMNSLTYITLANIN-VTDL-TGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMG 97

Query: 718 NHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFF 777
             +          L  L +LDIS +    S+ +                           
Sbjct: 98  KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT------------------------KIN 133

Query: 778 NCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSN 837
               +  +DLSYN    +I   +  L +L  L +  + +     I+     +L  L   +
Sbjct: 134 TLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRGIE--DFPKLNQLYAFS 190

Query: 838 NNL 840
             +
Sbjct: 191 QTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.1 bits (136), Expect = 5e-09
 Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 8/94 (8%)

Query: 97  FTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLT 156
            +    L  LD+  +      ++  L +++ L  +  ++L  N     I   L  L  L 
Sbjct: 108 LSGLTSLTLLDISHSAH----DDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELK 162

Query: 157 SLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMI 190
           SL++  + +    D + ++    L +L      I
Sbjct: 163 SLNIQFDGVH---DYRGIEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.8 bits (130), Expect = 4e-08
 Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 1/84 (1%)

Query: 907 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 966
           L  L +    +     P +  LT +  L++SH+     I +  + L  + S+DLSYN   
Sbjct: 90  LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI 149

Query: 967 WKIPYQLVELNTLAVFSVAYNNLS 990
             I   L  L  L   ++ ++ + 
Sbjct: 150 TDIM-PLKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 15/87 (17%), Positives = 35/87 (40%), Gaps = 2/87 (2%)

Query: 907 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 966
           +  L ++      +  P I  L+ ++ L +   ++        S L ++  LD+S++   
Sbjct: 68  IKDLTINNIH-ATNYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125

Query: 967 WKIPYQLVELNTLAVFSVAYNNLSGKI 993
             I  ++  L  +    ++YN     I
Sbjct: 126 DSILTKINTLPKVNSIDLSYNGAITDI 152

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 30/224 (13%), Positives = 67/224 (29%), Gaps = 73/224 (32%)

Query: 408 ANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFD 467
           A M SL  + +++   +  ++   + +  +I+DL +++ H     +  P+   S L+   
Sbjct: 41  AQMNSLTYITLANIN-VTDLT--GIEYAHNIKDLTINNIHAT---NYNPISGLSNLERLR 94

Query: 468 AENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNE 527
               ++ ++ I +                                               
Sbjct: 95  IMGKDVTSDKIPN----------------------------------------------- 107

Query: 528 EFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDI-- 585
                 L   T L  L + + +        I++  ++  +D+S N         I DI  
Sbjct: 108 ------LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG-------AITDIMP 154

Query: 586 ---LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGE 626
              L  L   NI  + +         +   L  L   +  + G+
Sbjct: 155 LKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.3 bits (121), Expect = 6e-07
 Identities = 21/166 (12%), Positives = 60/166 (36%), Gaps = 12/166 (7%)

Query: 706 NLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKN 765
                 + ++ ++       +   Q+  L  + +++ N++  L        I+ + ++  
Sbjct: 21  TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVT-DLTGIEYAHNIKDLTINNI 76

Query: 766 MLHGQLKEGTFFNCLT-LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQL 824
                       + L+ L  L +    +  +    + GL+ L+ L ++H+  +  +  ++
Sbjct: 77  ----HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132

Query: 825 CRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE---RYNNGSSLQPFE 867
             L ++  +DLS N     I        L     +++     +  E
Sbjct: 133 NTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIE 178

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 29/220 (13%), Positives = 65/220 (29%), Gaps = 51/220 (23%)

Query: 730 QLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLT-LMILDLS 788
             +      +  ++ +    +      +  + L+       + + T       +  L ++
Sbjct: 21  TFKAYLNGLLGQSSTANITEA--QMNSLTYITLANI----NVTDLTGIEYAHNIKDLTIN 74

Query: 789 YNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCF 848
             H     P  + GLS L  L +   ++  +    L  L  L LLD+S++     I +  
Sbjct: 75  NIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132

Query: 849 DN----TTLHERYNNG-SSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRV 903
           +      ++   YN   + + P +T                L                  
Sbjct: 133 NTLPKVNSIDLSYNGAITDIMPLKT----------------LPE---------------- 160

Query: 904 PSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAG 943
              L  L++  +  +      I +  K+  L      + G
Sbjct: 161 ---LKSLNIQFDG-VHDYRG-IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 14/89 (15%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 907 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 966
           L+ + L+    +  +   I     I+ L +++ +      +  S L N+E L +    ++
Sbjct: 46  LTYITLANIN-VTDLTG-IEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVT 101

Query: 967 WKIPYQLVELNTLAVFSVAYNNLSGKIPE 995
                 L  L +L +  ++++     I  
Sbjct: 102 SDKIPNLSGLTSLTLLDISHSAHDDSILT 130

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 94.7 bits (235), Expect = 5e-20
 Identities = 59/315 (18%), Positives = 103/315 (32%), Gaps = 73/315 (23%)

Query: 533 LLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVF 592
             +   K        +  V    L      Q   L +++ N    +P  +     ++TV 
Sbjct: 32  AWDKWEKQALPGENRNEAVS--LLKECLINQFSELQLNRLNLS-SLPDNLP---PQITVL 85

Query: 593 NISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHM 652
            I+ NAL  S+P    +   L++LD  +N+L+  +PE  A    SL+ L + NN L    
Sbjct: 86  EITQNALI-SLPELPAS---LEYLDACDNRLS-TLPELPA----SLKHLDVDNNQLT--- 133

Query: 653 FSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRH 712
                                  +P+  +    L+ +   NN L+  +P    +L VL  
Sbjct: 134 ----------------------MLPELPA---LLEYINADNNQLT-MLPELPTSLEVLS- 166

Query: 713 IIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLK 772
             +  N +     L       L+ LD+S N +  SLP+        + H S+        
Sbjct: 167 --VRNNQLTFLPEL----PESLEALDVSTNLLE-SLPAV-----PVRNHHSEETE----- 209

Query: 773 EGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQL 832
                     +      N +  +IP+ +  L     +IL  N L   +   L +      
Sbjct: 210 ----------IFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPD 258

Query: 833 LDLSNNNLHGHIPSC 847
                          
Sbjct: 259 YHGPRIYFSMSDGQQ 273

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 86.6 bits (214), Expect = 2e-17
 Identities = 60/365 (16%), Positives = 99/365 (27%), Gaps = 100/365 (27%)

Query: 609 NMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHM-FSRNFNLTNLIWLQL 667
           N NF    +   N ++                 AL   N    +   +   +     LQL
Sbjct: 8   NNNFSLSQNSFYNTIS-GTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQL 66

Query: 668 EGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLE 727
              +    +P +L     +  L ++ N+L   +P    +L  L       N +   +P  
Sbjct: 67  NRLNLS-SLPDNL--PPQITVLEITQNALI-SLPELPASLEYL---DACDNRLST-LPEL 118

Query: 728 FCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDL 787
              L   + LD+ +N ++  LP                 L   L+            ++ 
Sbjct: 119 PASL---KHLDVDNNQLT-MLPE----------------LPALLEY-----------INA 147

Query: 788 SYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSC 847
             N L   +P+     + L  L + +N L   +P        L+ LD+S N L   +P+ 
Sbjct: 148 DNNQLT-MLPEL---PTSLEVLSVRNNQLT-FLPELP---ESLEALDVSTNLLE-SLPAV 198

Query: 848 FDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLL 907
                  E                                                    
Sbjct: 199 PVRNHHSEE-------------------------------------------------TE 209

Query: 908 SGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSW 967
                  NR I HIP  I +L    T+ L  N L+  I  + S               S 
Sbjct: 210 IFFRCRENR-ITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSM 268

Query: 968 KIPYQ 972
               Q
Sbjct: 269 SDGQQ 273

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 80.0 bits (197), Expect = 2e-15
 Identities = 51/321 (15%), Positives = 105/321 (32%), Gaps = 48/321 (14%)

Query: 128 LSNLKMLNLVGNLFNNSILSS----LARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKL 183
           L      +L  N F N+I  +     +         L       ++ + +   +    +L
Sbjct: 5   LPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSEL 64

Query: 184 NIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSL-ARLSSLRSLLLYDNRL 242
            + R  +        P  L     + V +++ N      L SL    +SL  L   DNRL
Sbjct: 65  QLNRLNLSSL-----PDNL--PPQITVLEITQNA-----LISLPELPASLEYLDACDNRL 112

Query: 243 EGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSM 302
             ++     +  ++L+ LD+  N++    +P+  + L  ++          D ++L    
Sbjct: 113 S-TLP----ELPASLKHLDVDNNQLT--MLPELPALLEYINA---------DNNQLTMLP 156

Query: 303 GSFPSLNTLDLSYNNFTETVTTTTQGFPHF-KSLKELYMDDARI-ALNTSFLQIIGESMP 360
               SL  L +  N  T          P   +SL+ L +    + +L    ++    S  
Sbjct: 157 ELPTSLEVLSVRNNQLTF--------LPELPESLEALDVSTNLLESLPAVPVRNHH-SEE 207

Query: 361 SIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSS 420
           +  +         N    + + +  L     + + DN L   +   L+  T+        
Sbjct: 208 TEIFFRCRE----NRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPR 263

Query: 421 NQLIGSISSSPLIHLTSIEDL 441
                S      +H    + +
Sbjct: 264 IYFSMSDGQQNTLHRPLADAV 284

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 78.1 bits (192), Expect = 7e-15
 Identities = 55/304 (18%), Positives = 92/304 (30%), Gaps = 73/304 (24%)

Query: 688 GLFLSNNSLSGKIPRWLGNLTVLRHIIMPK-NHIEGPIPLEFCQLRILQILDISDNNISG 746
                 N++SG    +           +P  N  E    L+ C +     L ++  N+S 
Sbjct: 14  SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS- 72

Query: 747 SLPSCYDFVCIEQVHLSKNMLH------GQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV 800
           SLP       I  + +++N L         L+            LD   N L+  +P+  
Sbjct: 73  SLPDN-LPPQITVLEITQNALISLPELPASLEY-----------LDACDNRLS-TLPEL- 118

Query: 801 DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN-TTLHERYNN 859
              + L +L + +N L   +P        L+ ++  NN L   +P    +   L  R N 
Sbjct: 119 --PASLKHLDVDNNQLT-MLPELPA---LLEYINADNNQLT-MLPELPTSLEVLSVRNNQ 171

Query: 860 GSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIG 919
            + L                                        P  L  LD+S N L  
Sbjct: 172 LTFLPEL-------------------------------------PESLEALDVSTNLLE- 193

Query: 920 HIPPQIGNLTKIQT----LNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVE 975
            +P         +          N +   IP    +L    ++ L  N LS +I   L +
Sbjct: 194 SLPAVPVRNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQ 252

Query: 976 LNTL 979
               
Sbjct: 253 QTAQ 256

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 75.8 bits (186), Expect = 4e-14
 Identities = 62/307 (20%), Positives = 108/307 (35%), Gaps = 47/307 (15%)

Query: 450 IPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGIT--FPK 507
           + I L P+ N+  L   ++  N I+    +  S      + +   L    R+       +
Sbjct: 1   MSIML-PINNNFSLSQ-NSFYNTISGTYADYFSAWD---KWEKQALPGENRNEAVSLLKE 55

Query: 508 FLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLL 567
            L NQ     ++L+ + +    P+ L      +  L +  ++L+    LP      L  L
Sbjct: 56  CLINQ--FSELQLNRLNL-SSLPDNLPPQ---ITVLEITQNALI---SLP-ELPASLEYL 105

Query: 568 DVSKNNFQGHIPLEIG----------------DILSRLTVFNISMNALDGSIPSSFGNMN 611
           D   N     +P                    ++ + L   N   N L   +P    +  
Sbjct: 106 DACDNRLS-TLPELPASLKHLDVDNNQLTMLPELPALLEYINADNNQL-TMLPELPTS-- 161

Query: 612 FLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEG--HMFSRNFNLTNL-IWLQLE 668
            L+ L + NNQLT  +PE       SL +L +S N LE    +  RN +     I+ +  
Sbjct: 162 -LEVLSVRNNQLT-FLPELPE----SLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCR 215

Query: 669 GNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEF 728
            N     IP+++        + L +N LS +I   L   T       P+ +       + 
Sbjct: 216 ENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQN 274

Query: 729 CQLRILQ 735
              R L 
Sbjct: 275 TLHRPLA 281

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 73.1 bits (179), Expect = 2e-13
 Identities = 42/225 (18%), Positives = 78/225 (34%), Gaps = 42/225 (18%)

Query: 100 FQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSL-ARLSSLTSL 158
             Q   L L   +++   +N           + +L +  N      L SL    +SL  L
Sbjct: 58  INQFSELQLNRLNLSSLPDNLP-------PQITVLEITQNA-----LISLPELPASLEYL 105

Query: 159 DLSANRLKGSIDIKEL-DSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNL 217
           D   NRL        L +    L+ L++  N +        P+  + L  +       N 
Sbjct: 106 DACDNRL------STLPELPASLKHLDVDNNQLTML-----PELPALLEYI-------NA 147

Query: 218 FNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACS 277
            NN +       +SL  L + +N+L         +   +LE LD+S N ++   +P    
Sbjct: 148 DNNQLTMLPELPTSLEVLSVRNNQLTFL-----PELPESLEALDVSTNLLE--SLPAVPV 200

Query: 278 GLRKLSYLHLLRVGIRDG--SKLLQSMGSFPSLNTLDLSYNNFTE 320
                     +    R+   + + +++ S     T+ L  N  + 
Sbjct: 201 RNHHSEET-EIFFRCRENRITHIPENILSLDPTCTIILEDNPLSS 244

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 63.1 bits (153), Expect = 3e-10
 Identities = 48/221 (21%), Positives = 75/221 (33%), Gaps = 54/221 (24%)

Query: 778 NCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVP-IQLCRLNQLQLLDLS 836
           N    +  +  YN ++G   D      +     L   N    V  ++ C +NQ   L L+
Sbjct: 8   NNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLN 67

Query: 837 NNNLHGHIPSCFDN--TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKS 894
             NL   +P       T L    N   SL                P+             
Sbjct: 68  RLNLS-SLPDNLPPQITVLEITQNALISL----------------PE------------- 97

Query: 895 ITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRN 954
                   +P+ L  LD   NRL   +P    +L     L++ +N L   +P   + L  
Sbjct: 98  --------LPASLEYLDACDNRLS-TLPELPASLKH---LDVDNNQLTM-LPELPALL-- 142

Query: 955 IESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPE 995
            E ++   N+L+  +P     L  L   SV  N L+  +PE
Sbjct: 143 -EYINADNNQLT-MLPELPTSLEVL---SVRNNQLT-FLPE 177

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 87.0 bits (216), Expect = 5e-19
 Identities = 39/200 (19%), Positives = 70/200 (35%), Gaps = 24/200 (12%)

Query: 122 LERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLE 181
           +     L+N    NL      +  L S   LS + + +   + ++    +  +    +L+
Sbjct: 12  VFPDPGLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQ---SLAGMQFFTNLK 66

Query: 182 KLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNR 241
           +L++  N I           L  L  L+   ++ N   N  L+ +     L  L L +N 
Sbjct: 67  ELHLSHNQISDL------SPLKDLTKLEELSVNRNRLKN--LNGIPSA-CLSRLFLDNNE 117

Query: 242 LEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQS 301
           L    D      L NLE L +  N++ +         L KL  L L    I +       
Sbjct: 118 LR---DTDSLIHLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHGNEITN----TGG 167

Query: 302 MGSFPSLNTLDLSYNNFTET 321
           +     +N +DL+       
Sbjct: 168 LTRLKKVNWIDLTGQKCVNE 187

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 78.5 bits (194), Expect = 5e-16
 Identities = 40/190 (21%), Positives = 77/190 (40%), Gaps = 27/190 (14%)

Query: 100 FQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLD 159
              +++ +  +++I      + L  +   +NLK L+L  N    S LS L  L+ L  L 
Sbjct: 40  LSGVQNFNGDNSNI------QSLAGMQFFTNLKELHLSHN--QISDLSPLKDLTKLEELS 91

Query: 160 LSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFN 219
           ++ NRLK   ++  + S   L +L +  N +           L  L NL++  +  N   
Sbjct: 92  VNRNRLK---NLNGIPSAC-LSRLFLDNNELRDT------DSLIHLKNLEILSIRNNKLK 141

Query: 220 NSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGL 279
           +  +  L  LS L  L L+ N +    +      L  +  +D++  +  N  V       
Sbjct: 142 S--IVMLGFLSKLEVLDLHGNEIT---NTGGLTRLKKVNWIDLTGQKCVNEPVKY----Q 192

Query: 280 RKLSYLHLLR 289
            +L   + ++
Sbjct: 193 PELYITNTVK 202

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 76.2 bits (188), Expect = 3e-15
 Identities = 39/210 (18%), Positives = 68/210 (32%), Gaps = 29/210 (13%)

Query: 142 NNSI--LSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGP 199
              I  +     L++    +L    +    D+     L  ++  N   + I         
Sbjct: 6   PTPINQVFPDPGLANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNSNIQSL------ 56

Query: 200 KRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEE 259
             +    NLK   LS N    S LS L  L+ L  L +  NR    +        + L  
Sbjct: 57  AGMQFFTNLKELHLSHN--QISDLSPLKDLTKLEELSVNRNR----LKNLNGIPSACLSR 110

Query: 260 LDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFT 319
           L +  NE+ + +   +   L+ L  L +    ++     +  +G    L  LDL  N  T
Sbjct: 111 LFLDNNELRDTD---SLIHLKNLEILSIRNNKLKS----IVMLGFLSKLEVLDLHGNEIT 163

Query: 320 ETVTTTTQGFPHFKSLKELYMDDARIALNT 349
                 T G    K +  + +   +     
Sbjct: 164 N-----TGGLTRLKKVNWIDLTGQKCVNEP 188

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 67.0 bits (164), Expect = 4e-12
 Identities = 42/178 (23%), Positives = 61/178 (34%), Gaps = 34/178 (19%)

Query: 100 FQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGN-----------------LFN 142
           F  L+ L L  N I        L  L  L+ L+ L++  N                 L N
Sbjct: 62  FTNLKELHLSHNQI------SDLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDN 115

Query: 143 NSI--LSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPK 200
           N +    SL  L +L  L +  N+LK    I  L  L  LE L++  N I          
Sbjct: 116 NELRDTDSLIHLKNLEILSIRNNKLK---SIVMLGFLSKLEVLDLHGNEITNT------G 166

Query: 201 RLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLE 258
            L+RL  +   DL+G    N  +     L    ++   D R      +    S  +  
Sbjct: 167 GLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGC 224

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 39/263 (14%), Positives = 77/263 (29%), Gaps = 80/263 (30%)

Query: 219 NNSI--LSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQAC 276
              I  +     L++     L    +    D+     LS ++  +   + I +       
Sbjct: 6   PTPINQVFPDPGLANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNSNIQS------- 55

Query: 277 SGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLK 336
                                 L  M  F +L  L LS+N  ++              L+
Sbjct: 56  ----------------------LAGMQFFTNLKELHLSHNQISDL-----SPLKDLTKLE 88

Query: 337 ELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMAD 396
           EL ++  R+        + G     +  L L N+ + +                      
Sbjct: 89  ELSVNRNRLK------NLNGIPSACLSRLFLDNNELRDTD-------------------- 122

Query: 397 NDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEP 456
                     L ++ +L IL + +N+ + SI    L  L+ +E L L  N      +   
Sbjct: 123 ---------SLIHLKNLEILSIRNNK-LKSI--VMLGFLSKLEVLDLHGNEIT---NTGG 167

Query: 457 LFNHSRLKIFDAENNEINAEIIE 479
           L    ++   D    +   E ++
Sbjct: 168 LTRLKKVNWIDLTGQKCVNEPVK 190

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 47.7 bits (114), Expect = 7e-06
 Identities = 47/270 (17%), Positives = 81/270 (30%), Gaps = 49/270 (18%)

Query: 430 SPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQ 489
            P   L +     L          L      S ++ F+ +N+ I   +      T     
Sbjct: 13  FPDPGLANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNSNIQ-SLAGMQFFT----N 64

Query: 490 LQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDS 549
           L+ L LS             +NQ       +S +          L++ TKL +LS+  + 
Sbjct: 65  LKELHLS-------------HNQ-------ISDLSP--------LKDLTKLEELSVNRNR 96

Query: 550 LVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGN 609
           L     L       L  L +  N  +    L     L  L + +I  N L  SI    G 
Sbjct: 97  LK---NLNGIPSACLSRLFLDNNELRDTDSLI---HLKNLEILSIRNNKLK-SI-VMLGF 148

Query: 610 MNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEG 669
           ++ L+ LDL  N++T             +  + L+              L     ++   
Sbjct: 149 LSKLEVLDLHGNEITNTGGLT---RLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPD 205

Query: 670 NHFVGEIPQSLSKCSSLQGLFLSNNSLSGK 699
             ++   P  +S   S     +        
Sbjct: 206 GRWIS--PYYISNGGSYVDGCVLWELPVYT 233

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 47.7 bits (114), Expect = 8e-06
 Identities = 36/267 (13%), Positives = 73/267 (27%), Gaps = 72/267 (26%)

Query: 714 IMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKE 773
           I     I    P     L      ++   +++       D V  +               
Sbjct: 3   IQRPTPINQVFPDP--GLANAVKQNLGKQSVT-------DLVSQK--------------- 38

Query: 774 GTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLL 833
                   +   +   +++  ++   +   + L  L L+HN +    P  L  L +L+ L
Sbjct: 39  ----ELSGVQNFNGDNSNIQ-SLAG-MQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90

Query: 834 DLSNNNLHGHIPSCFDN-TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTT 892
            ++ N L           + L    N                                  
Sbjct: 91  SVNRNRLKNLNGIPSACLSRLFLDNNELRDTDSLIHL----------------------- 127

Query: 893 KSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNL 952
                         L  L +  N+ +  I   +G L+K++ L+L  N +        + L
Sbjct: 128 ------------KNLEILSIRNNK-LKSIVM-LGFLSKLEVLDLHGNEITNTGG--LTRL 171

Query: 953 RNIESLDLSYNKLSWKIPYQLVELNTL 979
           + +  +DL+  K   +      EL   
Sbjct: 172 KKVNWIDLTGQKCVNEPVKYQPELYIT 198

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 33/221 (14%), Positives = 70/221 (31%), Gaps = 39/221 (17%)

Query: 534 LENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFN 593
           ++  T L++L L ++ +      P+    +L  L V++N  +    +      + L+   
Sbjct: 59  MQFFTNLKELHLSHNQISDLS--PLKDLTKLEELSVNRNRLKNLNGIP----SACLSRLF 112

Query: 594 ISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMF 653
           +  N L      S  ++  L+ L + NN+L             S+  L            
Sbjct: 113 LDNNEL--RDTDSLIHLKNLEILSIRNNKLK------------SIVMLG----------- 147

Query: 654 SRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHI 713
                L+ L  L L GN  +      L++   +  + L+      +  ++   L +   +
Sbjct: 148 ----FLSKLEVLDLHGNE-ITNTG-GLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTV 201

Query: 714 IMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDF 754
             P      P  +            +       +    Y F
Sbjct: 202 KDPDGRWISPYYIS--NGGSYVDGCVLWELPVYTDEVSYKF 240

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 32/225 (14%), Positives = 80/225 (35%), Gaps = 47/225 (20%)

Query: 407 LANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIF 466
              + +    ++     +  +       L+ +++    +++ Q   SL  +   + LK  
Sbjct: 15  DPGLANAVKQNLGKQS-VTDL--VSQKELSGVQNFNGDNSNIQ---SLAGMQFFTNLKEL 68

Query: 467 DAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMN 526
              +N+I+ ++     LT    +L+ L ++              N+       L ++   
Sbjct: 69  HLSHNQIS-DLSPLKDLT----KLEELSVN-------------RNR-------LKNLNGI 103

Query: 527 EEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDIL 586
                     +  L +L L N+ L       +   K L +L +  N  +  + L     L
Sbjct: 104 P---------SACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIVMLG---FL 149

Query: 587 SRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHL 631
           S+L V ++  N +  +       +  + ++DL+  +   E  ++ 
Sbjct: 150 SKLEVLDLHGNEI--TNTGGLTRLKKVNWIDLTGQKCVNEPVKYQ 192

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 79.2 bits (196), Expect = 3e-16
 Identities = 57/238 (23%), Positives = 95/238 (39%), Gaps = 53/238 (22%)

Query: 153 SSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMI-----DKFVVSKGPKRLSRLNN 207
            S  +LDLS N L+  +      S  +L+ L++ R  I       +           L++
Sbjct: 28  FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAY---------QSLSH 77

Query: 208 LKVFDLSGNLFNNSILSSLA-----RLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDM 262
           L    L+GN      + SLA      LSSL+ L+  +  L  S++      L  L+EL++
Sbjct: 78  LSTLILTGNP-----IQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNV 131

Query: 263 SYNEIDNFEVPQACSGLRKLSYLHL-------LRVGIRDGSKLLQSMGSFPSLNTLDLSY 315
           ++N I +F++P+  S L  L +L L       +          +  +       +LDLS 
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL-----NLSLDLSL 186

Query: 316 NNFTETVTTTTQGFPH--FK--SLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSN 369
           N                 FK   LKEL +D  ++    S    I + + S+Q + L  
Sbjct: 187 NPMNF--------IQPGAFKEIRLKELALDTNQL---KSVPDGIFDRLTSLQKIWLHT 233

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 76.5 bits (189), Expect = 3e-15
 Identities = 59/205 (28%), Positives = 87/205 (42%), Gaps = 25/205 (12%)

Query: 92  LNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLA- 150
           L +  F  F +L+ LDL   +I      +G      LS+L  L L GN      + SLA 
Sbjct: 43  LGSYSFFSFPELQVLDLSRCEIQ--TIEDGA--YQSLSHLSTLILTGNP-----IQSLAL 93

Query: 151 ----RLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLN 206
                LSSL  L      L  S++   +  L+ L++LN+  N+I  F   K P+  S L 
Sbjct: 94  GAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSF---KLPEYFSNLT 149

Query: 207 NLKVFDLSGNLF---NNSILSSLARLSSLR-SLLLYDNRLEGSIDVKEFDSLSNLEELDM 262
           NL+  DLS N       + L  L ++  L  SL L  N +   I    F  +  L+EL +
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEI-RLKELAL 207

Query: 263 SYNEIDNFEVPQACSGLRKLSYLHL 287
             N++ +         L  L  + L
Sbjct: 208 DTNQLKSVP-DGIFDRLTSLQKIWL 231

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 75.4 bits (186), Expect = 6e-15
 Identities = 53/236 (22%), Positives = 95/236 (40%), Gaps = 31/236 (13%)

Query: 584 DILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLAL 643
           ++       ++S N L      SF +   LQ LDLS  ++   I +        L +L L
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLIL 83

Query: 644 SNNNL---EGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSL-SGK 699
           + N +       FS    L++L  L     +        +    +L+ L +++N + S K
Sbjct: 84  TGNPIQSLALGAFS---GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 700 IPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQ 759
           +P +  NLT L H+ +  N I+     +   L  + +L++                    
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL-------------------S 181

Query: 760 VHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHN 814
           + LS N ++  ++ G F   + L  L L  N L  ++PD + D L+ L  + L  N
Sbjct: 182 LDLSLNPMN-FIQPGAFKE-IRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 73.5 bits (181), Expect = 2e-14
 Identities = 54/232 (23%), Positives = 90/232 (38%), Gaps = 34/232 (14%)

Query: 230 SSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLR 289
            S ++L L  N L   +    F S   L+ LD+S  EI   E   A   L  LS L L  
Sbjct: 28  FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLIL-- 83

Query: 290 VGIRDGSKLLQSM--GSF---PSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDAR 344
                    +QS+  G+F    SL  L     N     +       H K+LKEL +    
Sbjct: 84  -----TGNPIQSLALGAFSGLSSLQKLVAVETNLA---SLENFPIGHLKTLKELNVAHNL 135

Query: 345 IALNTSFLQIIG--ESMPSIQYLSLSNSSVSNNSRTLDQG-LCPLVHLQ----ELHMADN 397
           I       ++     ++ ++++L LS+    N  +++    L  L  +      L ++ N
Sbjct: 136 I----QSFKLPEYFSNLTNLEHLDLSS----NKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 398 DLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQ 449
            +   +         L+ L + +NQL  S+       LTS++ + L  N + 
Sbjct: 188 PMN-FIQPGAFKEIRLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNPWD 237

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 73.5 bits (181), Expect = 3e-14
 Identities = 48/238 (20%), Positives = 86/238 (36%), Gaps = 41/238 (17%)

Query: 734 LQILDISDNNISGSLPSC--YDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNH 791
            + LD+S N +   L S   + F  ++ + LS+  +   +++G + +   L  L L+ N 
Sbjct: 30  TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP 87

Query: 792 LNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHG-HIPSCFD 849
           +  ++      GLS L  L+    NL       +  L  L+ L++++N +    +P  F 
Sbjct: 88  IQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 850 N----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPS 905
           N      L    N   S+                             +         +P 
Sbjct: 147 NLTNLEHLDLSSNKIQSIYC--------------------TDLRVLHQ---------MPL 177

Query: 906 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYN 963
           L   LDLS N  +  I P      +++ L L  N L       F  L +++ + L  N
Sbjct: 178 LNLSLDLSLNP-MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 70.0 bits (172), Expect = 5e-13
 Identities = 48/226 (21%), Positives = 89/226 (39%), Gaps = 33/226 (14%)

Query: 103 LESLDLRDNDIAGCVENEGLER--LSRLSNLKMLNLVGNLFNNSILSSL-----ARLSSL 155
            ++LDL  N +        L          L++L+L         + ++       LS L
Sbjct: 30  TKNLDLSFNPLRH------LGSYSFFSFPELQVLDLSRC-----EIQTIEDGAYQSLSHL 78

Query: 156 TSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSG 215
           ++L L+ N ++ S+ +     L  L+KL      +    +   P  +  L  LK  +++ 
Sbjct: 79  STLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLAS--LENFP--IGHLKTLKELNVAH 133

Query: 216 NLFNNSILSSL-ARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLE----ELDMSYNEIDNF 270
           NL  +  L    + L++L  L L  N+++ SI   +   L  +      LD+S N ++  
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192

Query: 271 EVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYN 316
           + P A   + +L  L L    ++  S          SL  + L  N
Sbjct: 193 Q-PGAFKEI-RLKELALDTNQLK--SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 57.7 bits (140), Expect = 6e-09
 Identities = 38/189 (20%), Positives = 63/189 (33%), Gaps = 58/189 (30%)

Query: 781 TLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNN 839
           +   LDLS+N L  ++         +L  L L+   ++         L+ L  L L+ N 
Sbjct: 29  STKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 840 LHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTY 899
           +                     SL                       +F   +       
Sbjct: 88  I--------------------QSLAL--------------------GAFSGLSS------ 101

Query: 900 QGRVPSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNL-AGPIPSTFSNLRNIES 957
                  L  L       +  +     G+L  ++ LN++HN + +  +P  FSNL N+E 
Sbjct: 102 -------LQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153

Query: 958 LDLSYNKLS 966
           LDLS NK+ 
Sbjct: 154 LDLSSNKIQ 162

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 53.8 bits (130), Expect = 8e-08
 Identities = 54/266 (20%), Positives = 97/266 (36%), Gaps = 65/266 (24%)

Query: 387 VHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDN 446
              + L ++ N LR    +   +   L++LD+S  + I +I       L+ +  LIL+ N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGN 86

Query: 447 HFQIPISLEP-LFNH-SRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGIT 504
             Q   SL    F+  S L+   A    +    +E+  +      L+ L ++        
Sbjct: 87  PIQ---SLALGAFSGLSSLQKLVAVETNL--ASLENFPIGHLK-TLKELNVA-------- 132

Query: 505 FPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQL 564
                +N        +   K+ E F                   +L             L
Sbjct: 133 -----HNL-------IQSFKLPEYF------------------SNLT-----------NL 151

Query: 565 RLLDVSKNNFQGHIPLEIGDILSRLTVFNISM----NALDGSIPSSFGNMNFLQFLDLSN 620
             LD+S N  Q  I      +L ++ + N+S+    N ++   P +F  +  L+ L L  
Sbjct: 152 EHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDT 209

Query: 621 NQLTGEIPEHLAMGCVSLRSLALSNN 646
           NQL   +P+ +     SL+ + L  N
Sbjct: 210 NQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 38/182 (20%), Positives = 64/182 (35%), Gaps = 47/182 (25%)

Query: 92  LNASLFTPFQQLESLDLRDNDI----AGCVENEGLERLSRLSNLKMLNLVGN-------- 139
           +    +     L +L L  N I     G          S LS+L+ L  V          
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGA--------FSGLSSLQKLVAVETNLASLENF 118

Query: 140 ------------LFNNSILS-----SLARLSSLTSLDLSANRLKGSIDIKELDSLRDLE- 181
                       + +N I S       + L++L  LDLS+N+++ SI   +L  L  +  
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPL 177

Query: 182 ---KLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLY 238
               L++  N ++            +   LK   L  N   +       RL+SL+ + L+
Sbjct: 178 LNLSLDLSLNPMNFI-----QPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 232

Query: 239 DN 240
            N
Sbjct: 233 TN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 33/147 (22%), Positives = 56/147 (38%), Gaps = 38/147 (25%)

Query: 305 FPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQY 364
             S   LDLS+N      + +      F S  EL                        Q 
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYS------FFSFPEL------------------------QV 56

Query: 365 LSLSNSSVSNNSRTLDQGLC-PLVHLQELHMADNDLRGSLPW-CLANMTSLRILDVSSNQ 422
           L LS        +T++ G    L HL  L +  N ++ SL     + ++SL+ L      
Sbjct: 57  LDLSR----CEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETN 111

Query: 423 LIGSISSSPLIHLTSIEDLILSDNHFQ 449
            + S+ + P+ HL ++++L ++ N  Q
Sbjct: 112 -LASLENFPIGHLKTLKELNVAHNLIQ 137

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 79.4 bits (196), Expect = 1e-15
 Identities = 53/350 (15%), Positives = 116/350 (33%), Gaps = 61/350 (17%)

Query: 125 LSRLSNLKMLNLVGNLFNN----SILSSLARLSSLTSLDLSANRL--KGSIDIKE-LDSL 177
           ++R S ++  +L  +        S+ + L    S+  + LS N +  + +  + E + S 
Sbjct: 1   MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 178 RDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLL 237
           +DLE                          +K            +L +L +   L ++ L
Sbjct: 60  KDLEIAEFSDIFT---------------GRVKDEIPEA---LRLLLQALLKCPKLHTVRL 101

Query: 238 YDNRLEGSIDVKEFDSL----SNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIR 293
            DN   G    +         + LE L +  N +      +    L++L+     +    
Sbjct: 102 SDNAF-GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNA-- 158

Query: 294 DGSKLLQSMGSFPSLNTLDLSYNNFT-ETVTTTTQGFPHFKSLKELYMDDARIALNTSFL 352
                       P L ++    N     ++    + F   + L  + M    I       
Sbjct: 159 ------------PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIR-PEGIE 205

Query: 353 QIIGE---SMPSIQYLSLSNSSVSNN-SRTLDQGLCPLVHLQELHMADNDLRGSLPWCLA 408
            ++ E       ++ L L +++ ++  S  L   L    +L+EL + D  L       + 
Sbjct: 206 HLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 265

Query: 409 NM------TSLRILDVSSNQL----IGSISSSPLIHLTSIEDLILSDNHF 448
           +         L+ L +  N++    + ++ +     +  +  L L+ N F
Sbjct: 266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 77.4 bits (191), Expect = 5e-15
 Identities = 51/259 (19%), Positives = 86/259 (33%), Gaps = 40/259 (15%)

Query: 101 QQLESLDLRDNDIAGCVENEGL-------ERLSRLSNLKMLNLVGNLFNN----SILSSL 149
           + LE  +  D    G V++E         + L +   L  + L  N F       ++  L
Sbjct: 60  KDLEIAEFSDIFT-GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFL 118

Query: 150 ARLSSLTSLDLSANR------------LKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSK 197
           ++ + L  L L  N             L+     K+  +   L  +  GRN ++   + +
Sbjct: 119 SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE 178

Query: 198 GPKRLSRLNNLKVFDLSGNLFNNS-----ILSSLARLSSLRSLLLYDNRL--EGSIDVKE 250
             K       L    +  N          +L  LA    L+ L L DN     GS  +  
Sbjct: 179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238

Query: 251 -FDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRD-------GSKLLQSM 302
              S  NL EL ++   +             KL  + L  + ++           L   +
Sbjct: 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI 298

Query: 303 GS-FPSLNTLDLSYNNFTE 320
               P L  L+L+ N F+E
Sbjct: 299 DEKMPDLLFLELNGNRFSE 317

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 77.1 bits (190), Expect = 6e-15
 Identities = 39/260 (15%), Positives = 73/260 (28%), Gaps = 43/260 (16%)

Query: 101 QQLESLDLRDNDI--AGCVENEGL-ERLSRLSNLKMLNLVGNLFNN----------SILS 147
             ++ + L  N I          L E ++   +L++                     +L 
Sbjct: 32  DSVKEIVLSGNTIGTEAA---RWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQ 88

Query: 148 SLARLSSLTSLDLSANRL--KGSIDIKE-LDSLRDLEKLNIGRNMI---------DKFVV 195
           +L +   L ++ LS N         + + L     LE L +  N +              
Sbjct: 89  ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQE 148

Query: 196 SKGPKRLSRLNNLKVFDLSGNLFNN----SILSSLARLSSLRSLLLYDNRL--EGSIDV- 248
               K+      L+      N   N        +      L ++ +  N +  EG   + 
Sbjct: 149 LAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLL 208

Query: 249 -KEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVG---IRD-GSKLLQSM- 302
            +       L+ LD+  N   +         L+    L  L +    +   G+  +    
Sbjct: 209 LEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF 268

Query: 303 --GSFPSLNTLDLSYNNFTE 320
                  L TL L YN    
Sbjct: 269 SKLENIGLQTLRLQYNEIEL 288

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 63.2 bits (154), Expect = 2e-10
 Identities = 47/267 (17%), Positives = 85/267 (31%), Gaps = 62/267 (23%)

Query: 534 LENNTKLRQLSLVNDSL-------VGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDIL 586
           L  +  ++++ L  +++       +      I S K L + + S + F G +  EI + L
Sbjct: 28  LLEDDSVKEIVLSGNTIGTEAARWLSEN---IASKKDLEIAEFS-DIFTGRVKDEIPEAL 83

Query: 587 ----------SRLTVFNISMNAL--DG--SIPSSFGNMNFLQFLDLSNNQLTGE------ 626
                      +L    +S NA        +         L+ L L NN L  +      
Sbjct: 84  RLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA 143

Query: 627 ------IPEHLAMGCVSLRSLALSNNNLE-------GHMFSRNFNLTNLIWLQLEGNHF- 672
                      A     LRS+    N LE          F  +     L  +++  N   
Sbjct: 144 RALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH---RLLHTVKMVQNGIR 200

Query: 673 ----VGEIPQSLSKCSSLQGLFLSNNSLSGK----IPRWLGNLTVLRHIIMPKNHI--EG 722
                  + + L+ C  L+ L L +N+ +      +   L +   LR + +    +   G
Sbjct: 201 PEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG 260

Query: 723 PIP----LEFCQLRILQILDISDNNIS 745
                      +   LQ L +  N I 
Sbjct: 261 AAAVVDAFSKLENIGLQTLRLQYNEIE 287

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 57.0 bits (138), Expect = 1e-08
 Identities = 48/272 (17%), Positives = 80/272 (29%), Gaps = 55/272 (20%)

Query: 609 NMNFLQFLDLSNNQLTGEIPEHLAMG---CVSLRSLALSNNNL-----EGHMFSRNF--- 657
             + ++ + LS N +  E    L+        L     S+        E     R     
Sbjct: 30  EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89

Query: 658 --NLTNLIWLQLEGNHF----VGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLR 711
                 L  ++L  N F       +   LSK + L+ L+L NN L  +    +     L+
Sbjct: 90  LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--ALQ 147

Query: 712 HIIMPKNHIEGPIPLEFCQLRILQILDISDNNI--------SGSLPSCYDFVCIEQVHLS 763
            + + K     P          L+ +    N +        + +  S      +  V + 
Sbjct: 148 ELAVNKKAKNAP---------PLRSIICGRNRLENGSMKEWAKTFQSH---RLLHTVKMV 195

Query: 764 KNMLHGQ-----LKEGTFFNCLTLMILDLSYNHLNGN----IPDRVDGLSQLSYLILAHN 814
           +N +  +     L EG    C  L +LDL  N         +   +     L  L L   
Sbjct: 196 QNGIRPEGIEHLLLEG-LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 254

Query: 815 NLEGE------VPIQLCRLNQLQLLDLSNNNL 840
            L                   LQ L L  N +
Sbjct: 255 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 55.5 bits (134), Expect = 6e-08
 Identities = 51/319 (15%), Positives = 96/319 (30%), Gaps = 65/319 (20%)

Query: 487 NFQLQSLLLSS---GYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWL---LENNTKL 540
            F ++   L        D  +    L     ++ + LS   +  E   WL   + +   L
Sbjct: 3   RFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 62

Query: 541 RQLSLVNDSLVGPFRLPI-----------HSHKQLRLLDVSKNNFQGHIPLEIGDILSR- 588
                 +D   G  +  I               +L  + +S N F       + D LS+ 
Sbjct: 63  EIAEF-SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH 121

Query: 589 --LTVFNISMN------------ALDGSIPSSFGNMNF-LQFLDLSNNQLTGEIPEHLAM 633
             L    +  N            AL     +        L+ +    N+L     +  A 
Sbjct: 122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181

Query: 634 G---CVSLRSLALSNNNLE--------GHMFSRNFNLTNLIWLQLEGNHF----VGEIPQ 678
                  L ++ +  N +             +       L  L L+ N F       +  
Sbjct: 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC---QELKVLDLQDNTFTHLGSSALAI 238

Query: 679 SLSKCSSLQGLFLSNNSLS-------GKIPRWLGNLTVLRHIIMPKNHI--EGPIPLEFC 729
           +L    +L+ L L++  LS             L N+  L+ + +  N I  +    L+  
Sbjct: 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG-LQTLRLQYNEIELDAVRTLKTV 297

Query: 730 ---QLRILQILDISDNNIS 745
              ++  L  L+++ N  S
Sbjct: 298 IDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 52.4 bits (126), Expect = 5e-07
 Identities = 48/328 (14%), Positives = 107/328 (32%), Gaps = 57/328 (17%)

Query: 361 SIQYLSLSNSSVSNNS-RTLDQGLCPLVHLQELHMADNDL--RG--SLPWCLANMTSLRI 415
           SI+  SL   +++    +++   L     ++E+ ++ N +       L   +A+   L I
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 416 LDVSSNQLIGSIS----------SSPLIHLTSIEDLILSDNHF----QIPISLEPLFNHS 461
            + S     G +              L+    +  + LSDN F    Q P+  + L  H+
Sbjct: 65  AEFSDIF-TGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLI-DFLSKHT 122

Query: 462 RLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLS 521
            L+     NN +  +                  ++   ++     K       L  +   
Sbjct: 123 PLEHLYLHNNGLGPQAGAK--------------IARALQELAVNKKAKNAPP-LRSIICG 167

Query: 522 HIKMNEEFPNWL---LENNTKLRQLSLVNDSL-----VGPFRLPIHSHKQLRLLDVSKNN 573
             ++            +++  L  + +V + +            +   ++L++LD+  N 
Sbjct: 168 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT 227

Query: 574 FQGHIPLEIGDILSR---LTVFNISMNALDG----SIPSSFGNMNF--LQFLDLSNNQLT 624
           F       +   L     L    ++   L      ++  +F  +    LQ L L  N++ 
Sbjct: 228 FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287

Query: 625 GE----IPEHLAMGCVSLRSLALSNNNL 648
            +    +   +      L  L L+ N  
Sbjct: 288 LDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 37/197 (18%), Positives = 74/197 (37%), Gaps = 32/197 (16%)

Query: 94  ASLFTPFQQLESLDLRDNDIAGCVENEGLER-----LSRLSNLKMLNLVGNLFNN----S 144
           A  F   + L ++ +  N I      EG+E      L+    LK+L+L  N F +    +
Sbjct: 180 AKTFQSHRLLHTVKMVQNGI----RPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA 235

Query: 145 ILSSLARLSSLTSLDLSANRL--KGSIDIKE---LDSLRDLEKLNIGRNMIDKFVVSKGP 199
           +  +L    +L  L L+   L  +G+  + +         L+ L +  N I+        
Sbjct: 236 LAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE----LDAV 291

Query: 200 KRLSR-----LNNLKVFDLSGNLFNNS--ILSSLAR-LSSLRSLLLYDNRLEGSIDVKEF 251
           + L       + +L   +L+GN F+    ++  +    S+     L +      +  +E 
Sbjct: 292 RTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEELTDEEE 351

Query: 252 DSLSNLEELDMSYNEID 268
           +     EE +    E +
Sbjct: 352 EDE--EEEAESQSPEPE 366

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 48.2 bits (115), Expect = 9e-06
 Identities = 33/229 (14%), Positives = 73/229 (31%), Gaps = 34/229 (14%)

Query: 279 LRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTET-VTTTTQGFPHFKSLKE 337
           +   S L L  +   D   +   +    S+  + LS N          ++     K L+ 
Sbjct: 6   IEGKS-LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 338 LYMDDARI----ALNTSFLQIIGESM---PSIQYLSLSNSSVSNNS-RTLDQGLCPLVHL 389
               D             L+++ +++   P +  + LS+++    +   L   L     L
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 124

Query: 390 QELHMADNDL-------------RGSLPWCLANMTSLRILDVSSNQLIGSIS----SSPL 432
           + L++ +N L               ++     N   LR +    N+ + + S    +   
Sbjct: 125 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAKTF 183

Query: 433 IHLTSIEDLILSDNHF-----QIPISLEPLFNHSRLKIFDAENNEINAE 476
                +  + +  N       +  +  E L     LK+ D ++N     
Sbjct: 184 QSHRLLHTVKMVQNGIRPEGIEHLLL-EGLAYCQELKVLDLQDNTFTHL 231

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 65/364 (17%), Positives = 107/364 (29%), Gaps = 89/364 (24%)

Query: 302 MGSFPSLNTLDLSYNNFT-ETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGE--- 357
           M  F S+    L  +  T E   +         S+KE+ +    I   T   + + E   
Sbjct: 1   MARF-SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTI--GTEAARWLSENIA 57

Query: 358 SMPSIQYLSLSNSSVSN-------NSRTLDQGLCPLVHLQELHMADNDL--RGSLPWC-- 406
           S   ++    S+              R L Q L     L  + ++DN        P    
Sbjct: 58  SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDF 117

Query: 407 LANMTSLRILDVSSNQ------------LIGSISSSPLIHLTSIEDLILSDNHFQ----I 450
           L+  T L  L + +N             L     +    +   +  +I   N  +     
Sbjct: 118 LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK 177

Query: 451 PISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLY 510
             + +   +H  L       N I  E IE              LL  G          L 
Sbjct: 178 EWA-KTFQSHRLLHTVKMVQNGIRPEGIEH-------------LLLEG----------LA 213

Query: 511 NQHDLEYVRLSHIKMNEEFPNWL---LENNTKLRQLSLVNDSLVGPF-------RLPIHS 560
              +L+ + L          + L   L++   LR+L L ND L+                
Sbjct: 214 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL-NDCLLSARGAAAVVDAFSKLE 272

Query: 561 HKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSN 620
           +  L+ L +  N        EI            ++  L   I      M  L FL+L+ 
Sbjct: 273 NIGLQTLRLQYN--------EIELD---------AVRTLKTVIDE---KMPDLLFLELNG 312

Query: 621 NQLT 624
           N+ +
Sbjct: 313 NRFS 316

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 77.9 bits (192), Expect = 2e-15
 Identities = 42/229 (18%), Positives = 77/229 (33%), Gaps = 21/229 (9%)

Query: 92  LNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILS---- 147
           +    F+ F  LE +++  ND+   +E +    L +L  +++         N++L     
Sbjct: 45  IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK------ANNLLYINPE 98

Query: 148 SLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNN 207
           +   L +L  L +S   +K  +             L+I  N+    +       LS    
Sbjct: 99  AFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS--FE 155

Query: 208 LKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEI 267
             +  L+ N       S+          L  +N LE  +    F   S    LD+S   I
Sbjct: 156 SVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRI 214

Query: 268 DNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYN 316
            +         L+KL       +      K L ++    +L    L+Y 
Sbjct: 215 HSLP-SYGLENLKKLRARSTYNL------KKLPTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 74.5 bits (183), Expect = 3e-14
 Identities = 45/282 (15%), Positives = 89/282 (31%), Gaps = 45/282 (15%)

Query: 565 RLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLT 624
           R+    ++     IP    D+          +  L      +F     L+ +++S N + 
Sbjct: 12  RVFLCQESKVT-EIP---SDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 67

Query: 625 GEIPEHLAMGCVSLRSLALSNNN----LEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQ-S 679
             I   +      L  + +   N    +    F    NL NL +L +        +P   
Sbjct: 68  EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ---NLPNLQYLLISNTGIK-HLPDVH 123

Query: 680 LSKCSSLQGLFLSNNSLSGKIP-RWLGNLTV-LRHIIMPKNHIEGPIPLEFCQLRILQIL 737
                    L + +N     I       L+     + + KN I+      F   ++ ++ 
Sbjct: 124 KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELN 183

Query: 738 DISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIP 797
              +NN+                         +L    F      +ILD+S   ++ ++P
Sbjct: 184 LSDNNNLE------------------------ELPNDVFHGASGPVILDISRTRIH-SLP 218

Query: 798 DRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNN 838
               + L +L        NL+ ++P  L +L  L    L+  
Sbjct: 219 SYGLENLKKLRARST--YNLK-KLPT-LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 68.7 bits (168), Expect = 2e-12
 Identities = 51/300 (17%), Positives = 80/300 (26%), Gaps = 77/300 (25%)

Query: 675 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLE-FCQLRI 733
           EIP  L    +   L      L             L  I + +N +   I  + F  L  
Sbjct: 23  EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80

Query: 734 LQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLN 793
           L  + I   N    +                           F N   L  L +S   + 
Sbjct: 81  LHEIRIEKANNLLYINP-----------------------EAFQNLPNLQYLLISNTGIK 117

Query: 794 GNIPDRV-DGLSQLSYLILAHNN----LEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCF 848
            ++PD       Q   L +  N     +E    + L    +  +L L+ N +     S F
Sbjct: 118 -HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS--FESVILWLNKNGIQEIHNSAF 174

Query: 849 DNTTLHE----RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVP 904
           + T L E      NN   L                      + F   +            
Sbjct: 175 NGTQLDELNLSDNNNLEELPN--------------------DVFHGASG----------- 203

Query: 905 SLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYN 963
                LD+S  R I  +P     NL K++  +  +             L  +    L+Y 
Sbjct: 204 --PVILDISRTR-IHSLPSYGLENLKKLRARSTYNLKKLPT----LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 66.0 bits (161), Expect = 2e-11
 Identities = 39/246 (15%), Positives = 79/246 (32%), Gaps = 26/246 (10%)

Query: 207 NLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMS-YN 265
           N                 + +    L  + +  N +   I+   F +L  L E+ +   N
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 266 EIDNFEVPQACSGLRKLSYLHLLRVGIR---DGSKLLQSMGSFPSLNTLDLSYNNFTETV 322
            +     P+A   L  L YL +   GI+   D  K+            LD+  N    T+
Sbjct: 91  NLLYIN-PEAFQNLPNLQYLLISNTGIKHLPDVHKI-----HSLQKVLLDIQDNINIHTI 144

Query: 323 TTTT-QGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQ 381
              +  G         L+++   I      +     +   +  L+LS+   +NN   L  
Sbjct: 145 ERNSFVGLSF--ESVILWLNKNGI----QEIHNSAFNGTQLDELNLSD---NNNLEELPN 195

Query: 382 G-LCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIED 440
                      L ++   +     + L N+  LR     + + + ++       L ++ +
Sbjct: 196 DVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLE-----KLVALME 250

Query: 441 LILSDN 446
             L+  
Sbjct: 251 ASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 65.2 bits (159), Expect = 3e-11
 Identities = 43/253 (16%), Positives = 77/253 (30%), Gaps = 37/253 (14%)

Query: 230 SSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLR 289
            +   L     +L   I    F    +LE++++S N++         S L KL  + + +
Sbjct: 30  RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 290 VGIRDGSKLLQSM--GSF---PSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDAR 344
                 +  L  +   +F   P+L  L +S                H      L + D  
Sbjct: 89  ------ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVH---KIHSLQKVLLDIQD-- 137

Query: 345 IALNTSFLQIIGES-----MPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELH-MADND 398
              N + +  I  +           L L+     N  + +         L EL+   +N+
Sbjct: 138 ---NIN-IHTIERNSFVGLSFESVILWLNK----NGIQEIHNSAFNGTQLDELNLSDNNN 189

Query: 399 LRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLF 458
           L           +   ILD+S  + I S+ S  L +L  +      +        L  L 
Sbjct: 190 LEELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRARSTYNL-----KKLPTLE 243

Query: 459 NHSRLKIFDAENN 471
               L        
Sbjct: 244 KLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 64.1 bits (156), Expect = 7e-11
 Identities = 40/257 (15%), Positives = 77/257 (29%), Gaps = 48/257 (18%)

Query: 734 LQILDISDNNISGSLPSC--YDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLS-YN 790
              L      +   +       F  +E++ +S+N +   ++   F N   L  + +   N
Sbjct: 32  AIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 791 HLNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPS-CF 848
           +L   I       L  L YL++++  ++    +      Q  LLD+ +N     I    F
Sbjct: 91  NLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149

Query: 849 DN-----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRV 903
                    L    N    +                       +F+ T            
Sbjct: 150 VGLSFESVILWLNKNGIQEIHN--------------------SAFNGTQ----------- 178

Query: 904 PSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSY 962
              L  L+LS N  +  +P  +    +    L++S   +         NL+ + +     
Sbjct: 179 ---LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN 235

Query: 963 NKLSWKIPYQLVELNTL 979
            K       +LV L   
Sbjct: 236 LK-KLPTLEKLVALMEA 251

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 60.2 bits (146), Expect = 1e-09
 Identities = 40/279 (14%), Positives = 89/279 (31%), Gaps = 57/279 (20%)

Query: 305 FPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGES----MP 360
             +   L                 F  F  L+++ +    +      L++I       +P
Sbjct: 29  PRNAIELRFVLTKLR---VIQKGAFSGFGDLEKIEISQNDV------LEVIEADVFSNLP 79

Query: 361 SIQYLSLSNSSVSNNSRTLDQGLC-PLVHLQELHMADNDLRGSLPWCLANMTSLRILDVS 419
            +  + +     +NN   ++      L +LQ L +++  ++        +     +LD+ 
Sbjct: 80  KLHEIRIEK---ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQ 136

Query: 420 SNQLIGSISSSPLIHLTS-IEDLILSDNHFQIPISLEP-LFNHSRL-KIFDAENNEINAE 476
            N  I +I  +  + L+     L L+ N  Q    +    FN ++L ++  ++NN +  E
Sbjct: 137 DNINIHTIERNSFVGLSFESVILWLNKNGIQ---EIHNSAFNGTQLDELNLSDNNNL--E 191

Query: 477 IIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLEN 536
            + +                             +       + +S  ++    P++ LEN
Sbjct: 192 ELPNDV--------------------------FHGASGPVILDISRTRI-HSLPSYGLEN 224

Query: 537 NTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQ 575
             KLR  S  N   +            L    ++     
Sbjct: 225 LKKLRARSTYNLKKLPTL----EKLVALMEASLT-YPSH 258

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 33/189 (17%), Positives = 58/189 (30%), Gaps = 12/189 (6%)

Query: 511 NQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVS 570
           N   L  +R+              +N   L+ L + N  +     +      Q  LLD+ 
Sbjct: 77  NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQ 136

Query: 571 KNNFQGHIPLE-IGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPE 629
            N     I       +     +  ++ N +     S+F      +     NN L  E+P 
Sbjct: 137 DNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPN 195

Query: 630 HLAMGCVSLRSLALSNNNLE---GHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSL 686
            +  G      L +S   +     +      NL  L            ++P +L K  +L
Sbjct: 196 DVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLK---KLP-TLEKLVAL 248

Query: 687 QGLFLSNNS 695
               L+  S
Sbjct: 249 MEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 55.6 bits (134), Expect = 4e-08
 Identities = 41/202 (20%), Positives = 68/202 (33%), Gaps = 12/202 (5%)

Query: 514 DLEYVRLSHIKMNEEFPNWLLENNTKLRQLSL-VNDSLVGPFRLPIHSHKQLRLLDVSKN 572
                +L  I+               L ++ +  ND L         +  +L  + + K 
Sbjct: 36  RFVLTKLRVIQKGA------FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 573 NFQGHIPLEIGDILSRLTVFNISMNALDGSIPS-SFGNMNFLQFLDLSNNQLTGEIPEHL 631
           N   +I  E    L  L    IS   +   +P     +      LD+ +N     I  + 
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHTIERNS 148

Query: 632 AMGCVS-LRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQ-SLSKCSSLQGL 689
            +G       L L+ N ++  + +  FN T L  L L  N+ + E+P       S    L
Sbjct: 149 FVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVIL 207

Query: 690 FLSNNSLSGKIPRWLGNLTVLR 711
            +S   +       L NL  LR
Sbjct: 208 DISRTRIHSLPSYGLENLKKLR 229

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 55.6 bits (134), Expect = 4e-08
 Identities = 33/245 (13%), Positives = 64/245 (26%), Gaps = 59/245 (24%)

Query: 757 IEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNN 815
             ++      L   +++G F     L  +++S N +   I   V   L +L  + +   N
Sbjct: 32  AIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 816 LEGEVPIQLCR-LNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMG 874
               +  +  + L  LQ L +SN  +                      L           
Sbjct: 91  NLLYINPEAFQNLPNLQYLLISNTGI--------------------KHLPDV-------- 122

Query: 875 GMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQI--GNLTKIQ 932
                           + +                LD+  N  I  I      G   +  
Sbjct: 123 ------------HKIHSLQ-------------KVLLDIQDNINIHTIERNSFVGLSFESV 157

Query: 933 TLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGK 992
            L L+ N +     S F+  +  E      N L           +   +  ++   +   
Sbjct: 158 ILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-S 216

Query: 993 IPERA 997
           +P   
Sbjct: 217 LPSYG 221

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 77.4 bits (191), Expect = 4e-15
 Identities = 63/338 (18%), Positives = 116/338 (34%), Gaps = 44/338 (13%)

Query: 101 QQLESLDLRDNDIAGCVENEGLERLSRL-----SNLKMLNLVGNLFNNSILSSLARL--- 152
             + SLDL  N++     +     L +      +++  LNL GN         L ++   
Sbjct: 22  HGVTSLDLSLNNL----YSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 153 --SSLTSLDLSANRLKGSIDIKEL-----DSLRDLEKLNIGRNMIDKFVVSKGPKRLSRL 205
             +++TSL+LS N L       EL          +  L++G N       S+  +  S L
Sbjct: 78  IPANVTSLNLSGNFL-SYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL 136

Query: 206 N-NLKVFDLSGNLFNNSILSSLARL-----SSLRSLLLYDNRL--EGSIDVKEFDSLSN- 256
             ++   +L GN         L ++     +++ SL L  N L  +   ++ +F +    
Sbjct: 137 PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPA 196

Query: 257 -LEELDMSYNEIDNFEVPQACSGLR----KLSYLHLLRVGIRD--GSKLLQSMGSFPSLN 309
            +  LD+S N +      +           +  L+L    +       L     S   L 
Sbjct: 197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQ 256

Query: 310 TLDLSYNNFT----ETVTTTTQGFPHFKSLKELYMDDARI--ALNTSFLQIIGESMPSIQ 363
           T+ L Y+       E        FP+ + +  +  +   I  + +     +I E      
Sbjct: 257 TVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKAD 316

Query: 364 YLSLSNSSVSNNSR--TLDQGLCPLVHLQELHMADNDL 399
             SL N  +    +  T  + L     L+E       L
Sbjct: 317 VPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 71.7 bits (176), Expect = 3e-13
 Identities = 58/358 (16%), Positives = 118/358 (32%), Gaps = 57/358 (15%)

Query: 140 LFNNSILSSLARL--------SSLTSLDLSANRLKGSIDIKEL-DSLRD----LEKLNIG 186
           +     L   +            +TSLDLS N L  SI   EL  +  +    +  LN+ 
Sbjct: 1   MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNL-YSISTVELIQAFANTPASVTSLNLS 59

Query: 187 RNMIDKFVVSKGPKRLSRL-----NNLKVFDLSGNLFNNSILSSLARL-----SSLRSLL 236
            N +      K    L ++      N+   +LSGN  +      L +       ++  L 
Sbjct: 60  GNSLG----FKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLD 115

Query: 237 LYDNRLEGSIDVKEFDSL-----SNLEELDMSYNEIDNFEVPQACSGLR----KLSYLHL 287
           L  N    S    EF        +++  L++  N++      +    L      ++ L+L
Sbjct: 116 LGWNDF-SSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNL 174

Query: 288 LRVGIRD-GSKLLQSMGSFP--SLNTLDLSYNNFT-ETVTTTTQGFPHFK-SLKELYMDD 342
               +       L    +    S+ +LDLS N    ++       F      +  L +  
Sbjct: 175 RGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCL 234

Query: 343 ARI-ALNTSFLQIIGESMPSIQYLSLSNSSVSNNS----RTLDQGLCPLVHLQELHMADN 397
             +   +   L+++ +S+  +Q + L    V N S    + L      +  +  +     
Sbjct: 235 NCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK 294

Query: 398 DLRGSLPWCLANM-----TSLRILDVSSNQLI----GSISSSPLIHLTSIEDLILSDN 446
           ++  S    ++N+         +  + +  LI       +   L     + + I +  
Sbjct: 295 EIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCK 352

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 69.7 bits (171), Expect = 1e-12
 Identities = 43/264 (16%), Positives = 87/264 (32%), Gaps = 46/264 (17%)

Query: 91  YLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRL-----SNLKMLNLVGNLFNNSI 145
            L  +L      +  LDL  ND      ++      +      +++  LNL GN      
Sbjct: 99  ELVKTLAAIPFTITVLDLGWNDF----SSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS 154

Query: 146 LSSLARL-----SSLTSLDLSANRLKGSIDIKEL-DSLRD----LEKLNIGRNMIDKFVV 195
              L ++     +++ SL+L  N L  S +  EL   L      +  L++  N++     
Sbjct: 155 SDELIQILAAIPANVNSLNLRGNNL-ASKNCAELAKFLASIPASVTSLDLSANLLG---- 209

Query: 196 SKGPKRLSRL-----NNLKVFDLSGNLFNNS----ILSSLARLSSLRSLLLYDNRL---- 242
            K    L+ +     N++   +L  N  +      +      L  L+++ L  + +    
Sbjct: 210 LKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMS 269

Query: 243 -EGSIDVKE-FDSLSNLEELDMSYNEIDNFEVPQACSGLR----KLSYLHLLRVGIRDGS 296
            E    +   F ++  +  +D +  EI         + +R    K     LL   +    
Sbjct: 270 KEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQ 329

Query: 297 KLLQSMGSFP---SLNTLDLSYNN 317
           K   ++        L     +   
Sbjct: 330 KHQTNIEDLNIPDELRESIQTCKP 353

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 68.2 bits (167), Expect = 4e-12
 Identities = 63/314 (20%), Positives = 108/314 (34%), Gaps = 54/314 (17%)

Query: 71  NTMGRVVVLDLSQTHRGE--YWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRL 128
           NT   V  L+LS    G      L   L      + SL+L  N +      +  + L + 
Sbjct: 48  NTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL----SYKSSDELVKT 103

Query: 129 -----SNLKMLNLVGNLFNNSILSSLARL-----SSLTSLDLSANRLKGSIDIKEL-DSL 177
                  + +L+L  N F++   S   +      +S+TSL+L  N L G     EL   L
Sbjct: 104 LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDL-GIKSSDELIQIL 162

Query: 178 RD----LEKLNIGRNMIDKFVVSKGPKRLSRL-----NNLKVFDLSGNLFNNSILSSLAR 228
                 +  LN+  N +     SK    L++       ++   DLS NL      + LA 
Sbjct: 163 AAIPANVNSLNLRGNNLA----SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY 218

Query: 229 L-----SSLRSLLLYDNRL--EGSIDVKE-FDSLSNLEELDMSYNEIDNFEVPQAC---S 277
           +     + + SL L  N L      ++K   DSL +L+ + + Y+ + N    Q     +
Sbjct: 219 IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGA 278

Query: 278 GLRKLSYLHLLRV--------GIRDGSKLLQSMGSFPSLNTLDLSYNNFTET--VTTTTQ 327
               +  + L+               S L++ +      +   L            T  +
Sbjct: 279 AFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSG--KADVPSLLNQCLIFAQKHQTNIE 336

Query: 328 GFPHFKSLKELYMD 341
                  L+E    
Sbjct: 337 DLNIPDELRESIQT 350

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 53.6 bits (129), Expect = 2e-07
 Identities = 53/276 (19%), Positives = 94/276 (34%), Gaps = 49/276 (17%)

Query: 613 LQFLDLSNNQLTGEIPEHLAMG----CVSLRSLALSNNNLE---GHMFSR--NFNLTNLI 663
           +  LDLS N L       L         S+ SL LS N+L         +       N+ 
Sbjct: 24  VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83

Query: 664 WLQLEGNHF----VGEIPQSLSKC-SSLQGLFLSNNSLSGKIPRWLGNL-----TVLRHI 713
            L L GN        E+ ++L+    ++  L L  N  S K               +  +
Sbjct: 84  SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL 143

Query: 714 IMPKNHIEGPIPLEFCQL-----RILQILDISDNNI--------SGSLPSCYDFVCIEQV 760
            +  N +      E  Q+       +  L++  NN+        +  L S      +  +
Sbjct: 144 NLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIP--ASVTSL 201

Query: 761 HLSKNMLHGQ----LKEGTFFNCLTLMILDLSYNHLNG----NIPDRVDGLSQLSYLILA 812
            LS N+L  +    L          ++ L+L  N L+G    N+    D L  L  + L 
Sbjct: 202 DLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD 261

Query: 813 HNNLEGEVPIQ-------LCRLNQLQLLDLSNNNLH 841
           ++ ++     Q          + ++ L+D +   +H
Sbjct: 262 YDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 48.9 bits (117), Expect = 6e-06
 Identities = 52/362 (14%), Positives = 99/362 (27%), Gaps = 71/362 (19%)

Query: 407 LANMTSLRILDVSSNQL----IGSISSSPLIHLTSIEDLILSDNHFQ----IPISLEPLF 458
            +    +  LD+S N L       +  +      S+  L LS N         +      
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 459 NHSRLKIFDAENNEINAEIIE--SHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLE 516
             + +   +   N ++ +  +    +L    F +  L L              +N    +
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLG-------------WNDFSSK 124

Query: 517 YVRLSHIKMNEEFPNWLLENNTKLRQLSLVN--------DSLVGPFRLPIHSHKQLRLLD 568
                      EF          +  L+L          D L+            +  L+
Sbjct: 125 SS--------SEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILA---AIPANVNSLN 173

Query: 569 VSKNNFQGHIPLEIGDIL----SRLTVFNISMNALDGSIPSSFG-----NMNFLQFLDLS 619
           +  NN       E+   L    + +T  ++S N L     +          N +  L+L 
Sbjct: 174 LRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLC 233

Query: 620 NNQLTGEIPEHLAMG---CVSLRSLALSNNNLEG-------HMFSRNFNLTNLIWLQLEG 669
            N L G   E+L +       L+++ L  + ++         + +   N+  +I +   G
Sbjct: 234 LNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG 293

Query: 670 NHFVGEIPQSLSK-----CSSLQGLFLSNNSLS-----GKIPRWLGNLTVLRHIIMPKNH 719
                     +S              L N  L            L     LR  I     
Sbjct: 294 KEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKP 353

Query: 720 IE 721
           + 
Sbjct: 354 LL 355

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 56/362 (15%), Positives = 114/362 (31%), Gaps = 65/362 (17%)

Query: 255 SNLEELDMSYNEIDNFEVPQACSGLRK----LSYLHLLRVGIRD-GSKLLQSM--GSFPS 307
             +  LD+S N + +    +           ++ L+L    +    S  L  +      +
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81

Query: 308 LNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSL 367
           + +L+LS N  +             KS  EL       A+             +I  L L
Sbjct: 82  VTSLNLSGNFLSY------------KSSDELV--KTLAAIPF-----------TITVLDL 116

Query: 368 SNSSVSNNS-RTLDQGLCPL-VHLQELHMADNDLRGSLPWCLANM-----TSLRILDVSS 420
             +  S+ S     Q    L   +  L++  NDL       L  +      ++  L++  
Sbjct: 117 GWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG 176

Query: 421 NQLIGSIS----SSPLIHL-TSIEDLILSDNHFQ----IPISLEPLFNHSRLKIFDAENN 471
           N  + S +    +  L  +  S+  L LS N         ++       + +   +   N
Sbjct: 177 NN-LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN 235

Query: 472 EINAEIIES-HSLTTPNFQLQSLLLSSGYRDGIT------FPKFLYNQHDLEYVRLSHIK 524
            ++   +E+   L      LQ++ L       ++            N   +  V  +  +
Sbjct: 236 CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295

Query: 525 MNEE----FPNWLLENNTKLRQLSLVNDSLVGPFRLPIHS-----HKQLRLLDVSKNNFQ 575
           ++        N + E + K    SL+N  L+   +   +        +LR    +     
Sbjct: 296 IHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLL 355

Query: 576 GH 577
            H
Sbjct: 356 EH 357

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 46.2 bits (110), Expect = 4e-05
 Identities = 46/344 (13%), Positives = 102/344 (29%), Gaps = 44/344 (12%)

Query: 357 ESMPSIQYLSLSNSSVSNNS-RTLDQGLC-PLVHLQELHMADNDLRGSLPWCLANM---- 410
                +  L LS +++ + S   L Q        +  L+++ N L       L  +    
Sbjct: 19  SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI 78

Query: 411 -TSLRILDVSSNQL----IGSISSSPLIHLTSIEDLILSDNHFQ----IPISLEPLFNHS 461
             ++  L++S N L       +  +      +I  L L  N F                +
Sbjct: 79  PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPA 138

Query: 462 RLKIFDAENNEINAEIIE--SHSLTTPNFQLQSLLLSS---GYRDGITFPKFLYNQHD-L 515
            +   +   N++  +  +     L      + SL L       ++     KFL +    +
Sbjct: 139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASV 198

Query: 516 EYVRLSHIKMNEEFPNWLLE----NNTKLRQLSLVNDSL----VGPFRLPIHSHKQLRLL 567
             + LS   +  +    L          +  L+L  + L    +   +L   S K L+ +
Sbjct: 199 TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV 258

Query: 568 DVSKNNFQGHIPLEIGDILS------RLTVFNISMNALDGS----IPSSFGNMNF-LQFL 616
            +  +  +     +   + +      ++ + + +   +  S    I +    ++      
Sbjct: 259 YLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVP 318

Query: 617 DLSNNQLTGE----IPEHLAMGCVSLRSLALSNNNLEGHMFSRN 656
            L N  L                  LR    +   L  H    +
Sbjct: 319 SLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLLEHHHHHH 362

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 73.3 bits (180), Expect = 7e-14
 Identities = 45/184 (24%), Positives = 71/184 (38%), Gaps = 34/184 (18%)

Query: 675 EIPQSLSKCSSLQGLFLSNNSLSGKIPRW-LGNLTVLRHIIMPKNHIEGPIPLEFCQLRI 733
            +PQSL   S    L LS+N+LS     W    LT L  +++  NH+       F  +  
Sbjct: 32  NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN 89

Query: 734 LQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLN 793
           L+ LD+S N++  +L                           F +   L +L L  NH+ 
Sbjct: 90  LRYLDLSSNHLH-TLDE-----------------------FLFSDLQALEVLLLYNNHIV 125

Query: 794 GNIPDRV-DGLSQLSYLILAHNNLEGEVP----IQLCRLNQLQLLDLSNNNLHGHIPSCF 848
             +     + ++QL  L L+ N +    P        +L +L LLDLS+N L     +  
Sbjct: 126 -VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDL 183

Query: 849 DNTT 852
               
Sbjct: 184 QKLP 187

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 70.6 bits (173), Expect = 7e-13
 Identities = 37/168 (22%), Positives = 59/168 (35%), Gaps = 18/168 (10%)

Query: 207 NLKVFDLSGN-LFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYN 265
              + DLS N L       +  RL++L SLLL  N L   I  + F  + NL  LD+S N
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSN 98

Query: 266 EIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSM--GSF---PSLNTLDLSYNNFTE 320
            +   +     S L+ L  L L        +  +  +   +F     L  L LS N  + 
Sbjct: 99  HLHTLD-EFLFSDLQALEVLLL------YNNH-IVVVDRNAFEDMAQLQKLYLSQNQISR 150

Query: 321 TVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLS 368
                 +       L  L +   ++           + +P+     L 
Sbjct: 151 FPVELIKDGNKLPKLMLLDLSSNKL---KKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 69.5 bits (170), Expect = 1e-12
 Identities = 43/157 (27%), Positives = 63/157 (40%), Gaps = 14/157 (8%)

Query: 564 LRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPS-SFGNMNFLQFLDLSNNQ 622
             LLD+S NN            L+ L    +S N L+  I S +F  +  L++LDLS+N 
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNH 99

Query: 623 LTGEIPEHLAMGCVSLRSLALSNNNL---EGHMFSRNFNLTNLIWLQLEGNHFVGEIP-- 677
           L   + E L     +L  L L NN++   + + F    ++  L  L L  N      P  
Sbjct: 100 LH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFE---DMAQLQKLYLSQNQIS-RFPVE 154

Query: 678 --QSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRH 712
             +  +K   L  L LS+N L       L  L     
Sbjct: 155 LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK 191

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 65.2 bits (159), Expect = 3e-11
 Identities = 36/166 (21%), Positives = 62/166 (37%), Gaps = 20/166 (12%)

Query: 103 LESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILS----SLARLSSLTSL 158
              LDL  N+++         RL+ L +L        L +N +      +   + +L  L
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSL-------LLSHNHLNFISSEAFVPVPNLRYL 93

Query: 159 DLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNL- 217
           DLS+N L  ++D      L+ LE L +  N I              +  L+   LS N  
Sbjct: 94  DLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVV----DRNAFEDMAQLQKLYLSQNQI 148

Query: 218 --FNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELD 261
             F   ++    +L  L  L L  N+L+  + + +   L    +  
Sbjct: 149 SRFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNG 193

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 63.7 bits (155), Expect = 1e-10
 Identities = 63/259 (24%), Positives = 90/259 (34%), Gaps = 53/259 (20%)

Query: 614 QFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNL----EGHMFSRNFNLTNLIWLQLEG 669
             L  S  QL   +P+ L         L LS+NNL         +    LTNL  L L  
Sbjct: 21  NILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLSRLRAEWTPT---RLTNLHSLLLSH 73

Query: 670 NHFVGEIP-QSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLE- 727
           NH +  I  ++     +L+ L LS+N L         +L  L  +++  NHI   +    
Sbjct: 74  NH-LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV-VDRNA 131

Query: 728 FCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCL---TLMI 784
           F  +  LQ L +S N IS   P                            +      LM+
Sbjct: 132 FEDMAQLQKLYLSQNQIS-RFP-----------------------VELIKDGNKLPKLML 167

Query: 785 LDLSYNHLNGNIPDRVDGLSQLSYLILA-HNNLEGEVPIQ-LCRL----NQLQLLDLSNN 838
           LDLS N L       +  L       L  HNN     P++  C+L    +  Q   LS+ 
Sbjct: 168 LDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN-----PLECDCKLYQLFSHWQYRQLSSV 222

Query: 839 NLHGHIPSCFDNTTLHERY 857
                   C  +  LH  +
Sbjct: 223 MDFQEDLYCMHSKKLHNIF 241

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 62.9 bits (153), Expect = 2e-10
 Identities = 40/189 (21%), Positives = 61/189 (32%), Gaps = 33/189 (17%)

Query: 514 DLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNN 573
               + LSH  ++     W     T L  L L              SH  L  +      
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLL--------------SHNHLNFIS--SEA 83

Query: 574 FQGHIPLEIGDILSRLTVFNISMNALDGSIPS-SFGNMNFLQFLDLSNNQLTGEIPEHLA 632
           F           +  L   ++S N L  ++    F ++  L+ L L NN +   +  +  
Sbjct: 84  FVP---------VPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAF 132

Query: 633 MGCVSLRSLALSNNNL---EGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSL--Q 687
                L+ L LS N +      +      L  L+ L L  N         L K  +    
Sbjct: 133 EDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKN 192

Query: 688 GLFLSNNSL 696
           GL+L NN L
Sbjct: 193 GLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 59.9 bits (145), Expect = 2e-09
 Identities = 38/140 (27%), Positives = 59/140 (42%), Gaps = 11/140 (7%)

Query: 613 LQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNL---EGHMFSRNFNLTNLIWLQLEG 669
              LDLS+N L+    E       +L SL LS+N+L       F     + NL +L L  
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV---PVPNLRYLDLSS 97

Query: 670 NHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLE-- 727
           NH         S   +L+ L L NN +         ++  L+ + + +N I    P+E  
Sbjct: 98  NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELI 156

Query: 728 --FCQLRILQILDISDNNIS 745
               +L  L +LD+S N + 
Sbjct: 157 KDGNKLPKLMLLDLSSNKLK 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 58.3 bits (141), Expect = 5e-09
 Identities = 45/196 (22%), Positives = 78/196 (39%), Gaps = 16/196 (8%)

Query: 97  FTPFQQLESLDLRDNDIAGCVENEGLER--LSRLSNLKMLNLVGNLFNNSILSSLARLSS 154
            T    L SL L  N +        +       + NL+ L+L  N  +       + L +
Sbjct: 60  PTRLTNLHSLLLSHNHL------NFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQA 113

Query: 155 LTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLS 214
           L  L L  N +   +D    + +  L+KL + +N I      +  K  ++L  L + DLS
Sbjct: 114 LEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQI-SRFPVELIKDGNKLPKLMLLDLS 171

Query: 215 GNLFNNSILSSLARLSSL--RSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEV 272
            N      L+ L +L +     L L++N L    D K +   S+ +   +S   + +F+ 
Sbjct: 172 SNKLKKLPLTDLQKLPAWVKNGLYLHNNPL--ECDCKLYQLFSHWQYRQLS--SVMDFQE 227

Query: 273 PQACSGLRKLSYLHLL 288
              C   +KL  +  L
Sbjct: 228 DLYCMHSKKLHNIFSL 243

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.8 bits (137), Expect = 2e-08
 Identities = 40/200 (20%), Positives = 70/200 (35%), Gaps = 51/200 (25%)

Query: 830  LQLLDLSNNNLHGHIPS--CFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQ 883
              LLDLS+NNL   + +           +L   +N+ + +                    
Sbjct: 41   TALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISS------------------ 81

Query: 884  ILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLA 942
              E+F                  L  LDLS N L   +   +  +L  ++ L L +N++ 
Sbjct: 82   --EAFVPVPN-------------LRYLDLSSNHL-HTLDEFLFSDLQALEVLLLYNNHIV 125

Query: 943  GPIPSTFSNLRNIESLDLSYNKLSWKIP----YQLVELNTLAVFSVAYNNLSGKIPERAA 998
                + F ++  ++ L LS N++S   P        +L  L +  ++ N L  K+P    
Sbjct: 126  VVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDL 183

Query: 999  QFATFNESSY---EGNPFLC 1015
            Q       +      NP  C
Sbjct: 184  QKLPAWVKNGLYLHNNPLEC 203

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.8 bits (137), Expect = 2e-08
 Identities = 44/216 (20%), Positives = 78/216 (36%), Gaps = 51/216 (23%)

Query: 255 SNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSF---PSLNTL 311
           S    LD+S+N +         + L  L  L L    +      + S  +F   P+L  L
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF----ISS-EAFVPVPNLRYL 93

Query: 312 DLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSS 371
           DLS N+                             L+          + +++ L L N  
Sbjct: 94  DLSSNHLH--------------------------TLDEFLFS----DLQALEVLLLYN-- 121

Query: 372 VSNNSRTLDQG-LCPLVHLQELHMADNDLRGSLPW----CLANMTSLRILDVSSNQLIGS 426
             N+   +D+     +  LQ+L+++ N +    P         +  L +LD+SSN+ +  
Sbjct: 122 --NHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNK-LKK 177

Query: 427 ISSSPLIHLTSI--EDLILSDNHFQIPISLEPLFNH 460
           +  + L  L +     L L +N  +    L  LF+H
Sbjct: 178 LPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSH 213

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 54.1 bits (130), Expect = 1e-07
 Identities = 34/151 (22%), Positives = 59/151 (39%), Gaps = 18/151 (11%)

Query: 305 FPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIAL--NTSFLQIIGESMPSI 362
                 LDLS+NN +      T       +L  L +    +    + +F       +P++
Sbjct: 38  PSYTALLDLSHNNLSRLRAEWT--PTRLTNLHSLLLSHNHLNFISSEAF-----VPVPNL 90

Query: 363 QYLSLSNSSVSNNSRTLDQG-LCPLVHLQELHMADNDLRGSLPW-CLANMTSLRILDVSS 420
           +YL LS+    N+  TLD+     L  L+ L + +N +   +      +M  L+ L +S 
Sbjct: 91  RYLDLSS----NHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQ 145

Query: 421 NQL--IGSISSSPLIHLTSIEDLILSDNHFQ 449
           NQ+             L  +  L LS N  +
Sbjct: 146 NQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 50.2 bits (120), Expect = 2e-06
 Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 10/100 (10%)

Query: 903 VPSLLSGLDLSCNRLIGHIPPQI--GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDL 960
           +PS  + LDLS N  +  +  +     LT + +L LSHN+L       F  + N+  LDL
Sbjct: 37  LPSYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95

Query: 961 SYNKLS---WKIPYQLVELNTLAVFSVAYNNLSGKIPERA 997
           S N L      +   L  L  L    +  N++   +   A
Sbjct: 96  SSNHLHTLDEFLFSDLQALEVL---LLYNNHIV-VVDRNA 131

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.5 bits (118), Expect = 4e-06
 Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 12/118 (10%)

Query: 360 PSIQYLSLSNSSVSNNSRTLDQG--LCPLVHLQELHMADNDLRGSLPWCLANMTSLRILD 417
                L LS+    NN   L        L +L  L ++ N L          + +LR LD
Sbjct: 39  SYTALLDLSH----NNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94

Query: 418 VSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEP-LFNH-SRLKIFDAENNEI 473
           +SSN L  ++       L ++E L+L +NH      ++   F   ++L+      N+I
Sbjct: 95  LSSNHL-HTLDEFLFSDLQALEVLLLYNNHIV---VVDRNAFEDMAQLQKLYLSQNQI 148

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 41/242 (16%), Positives = 80/242 (33%), Gaps = 28/242 (11%)

Query: 60  DCCQWERVSCNNTMGRVV--------VLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDN 111
           +C Q E         + +         L L +TH      + +  F+    +  + +  +
Sbjct: 9   ECHQEEDFRVTCKDIQRIPSLPPSTQTLKLIETHLRT---IPSHAFSNLPNISRIYVSID 65

Query: 112 DIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLAR-----LSSLTSLDLSANRLK 166
                +E+     LS+++++        + N   L+ +       L  L  L +    LK
Sbjct: 66  VTLQQLESHSFYNLSKVTHI-------EIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK 118

Query: 167 GSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSL 226
              D+ ++ S      L I  N     +     + L   N      L  N F  S+    
Sbjct: 119 MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC--NETLTLKLYNNGF-TSVQGYA 175

Query: 227 ARLSSLRSLLLYDNRLEGSIDVKEFDSL-SNLEELDMSYNEIDNFEVPQACSGLRKLSYL 285
              + L ++ L  N+    ID   F  + S    LD+S   +      +    L++L   
Sbjct: 176 FNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALP-SKGLEHLKELIAR 234

Query: 286 HL 287
           + 
Sbjct: 235 NT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 67.0 bits (164), Expect = 2e-12
 Identities = 43/213 (20%), Positives = 81/213 (38%), Gaps = 20/213 (9%)

Query: 613 LQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNN----LEGHMFSRNFNLTNLIWLQLE 668
            Q L L    L   IP H      ++  + +S +     LE H F    NL+ +  +++ 
Sbjct: 33  TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFY---NLSKVTHIEIR 88

Query: 669 GNHFVGEIPQS-LSKCSSLQGLFLSNNSLSGKIP--RWLGNLTVLRHIIMPKNHIEGPIP 725
               +  I    L +   L+ L + N  L    P    + +  +   + +  N     IP
Sbjct: 89  NTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIP 147

Query: 726 LE-FCQLR-ILQILDISDNNISGSLPSC-YDFVCIEQVHLSKNMLHGQLKEGTFFNCLT- 781
           +  F  L      L + +N  + S+    ++   ++ V+L+KN     + +  F    + 
Sbjct: 148 VNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSG 206

Query: 782 LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHN 814
             +LD+S   +   +P    GL  L  LI  + 
Sbjct: 207 PSLLDVSQTSVT-ALPS--KGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 35/290 (12%), Positives = 79/290 (27%), Gaps = 87/290 (30%)

Query: 683 CSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDN 742
           C   +   ++   +  +IP    +   L+   + + H+       F  L  +  + +S +
Sbjct: 10  CHQEEDFRVTCKDIQ-RIPSLPPSTQTLK---LIETHLRTIPSHAFSNLPNISRIYVSID 65

Query: 743 NISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV-D 801
                L S                        +F+N   +  +++        I      
Sbjct: 66  VTLQQLES-----------------------HSFYNLSKVTHIEIRNTRNLTYIDPDALK 102

Query: 802 GLSQLSYLILAHNNLEGEVP--IQLCRLNQLQLLDLSNNNLHGHI-PSCFDNTTLHERYN 858
            L  L +L + +  L+   P   ++   +   +L++++N     I  + F          
Sbjct: 103 ELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQG-------- 153

Query: 859 NGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLI 918
                                                       + +    L L  N   
Sbjct: 154 --------------------------------------------LCNETLTLKLYNNG-F 168

Query: 919 GHIPPQIGNLTKIQTLNLSHNNLAGPIPS-TFSNLRN-IESLDLSYNKLS 966
             +     N TK+  + L+ N     I    F  + +    LD+S   ++
Sbjct: 169 TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 63.9 bits (156), Expect = 3e-11
 Identities = 36/193 (18%), Positives = 81/193 (41%), Gaps = 9/193 (4%)

Query: 564 LRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPS-SFGNMNFLQFLDLSNNQ 622
            + L + + + +  IP      L  ++   +S++     + S SF N++ +  +++ N +
Sbjct: 33  TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 623 LTGEIPEHLAMGCVSLRSLALSNNNLEG-HMFSRNFNLTNLIWLQLEGNHFVGEIPQSL- 680
               I          L+ L + N  L+     ++ ++      L++  N ++  IP +  
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAF 151

Query: 681 -SKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKN-HIEGPIPLEFCQLR-ILQIL 737
              C+    L L NN  +  +  +  N T L  + + KN ++       F  +     +L
Sbjct: 152 QGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLL 210

Query: 738 DISDNNISGSLPS 750
           D+S  +++ +LPS
Sbjct: 211 DVSQTSVT-ALPS 222

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 29/175 (16%), Positives = 53/175 (30%), Gaps = 40/175 (22%)

Query: 152 LSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVF 211
             S  +L L    L+ +I      +L ++ ++ +  +                   L+  
Sbjct: 30  PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSID-----------------VTLQ-- 69

Query: 212 DLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFE 271
            L  + F N        LS +  + + + R    ID      L  L+ L +    +  F 
Sbjct: 70  QLESHSFYN--------LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFP 121

Query: 272 VPQACSGLRKLSYLHLLRVGIRDGSKLLQSM--GSFPSLN----TLDLSYNNFTE 320
                        L +        +  + S+   +F  L     TL L  N FT 
Sbjct: 122 DLTKVYSTDIFFILEIT------DNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS 170

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 14/95 (14%), Positives = 33/95 (34%), Gaps = 5/95 (5%)

Query: 907 LSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPS-TFSNLRNIESLDLSYNK 964
           +S + +S +  +  +      NL+K+  + + +      I       L  ++ L +    
Sbjct: 57  ISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG 116

Query: 965 LSWKIP--YQLVELNTLAVFSVAYNNLSGKIPERA 997
           L    P   ++   +   +  +  N     IP  A
Sbjct: 117 LK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 20/141 (14%), Positives = 55/141 (39%), Gaps = 9/141 (6%)

Query: 360 PSIQYLSLSNSSVSNNSRTLDQG-LCPLVHLQELHMADNDLRGSLPW-CLANMTSLRILD 417
           PS Q L L       + RT+       L ++  ++++ +     L      N++ +  ++
Sbjct: 31  PSTQTLKLIE----THLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIE 86

Query: 418 VSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFD-AENNEINAE 476
           + + + +  I    L  L  ++ L + +   ++   L  +++     I +  +N  +   
Sbjct: 87  IRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYM--T 144

Query: 477 IIESHSLTTPNFQLQSLLLSS 497
            I  ++      +  +L L +
Sbjct: 145 SIPVNAFQGLCNETLTLKLYN 165

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 70.9 bits (174), Expect = 2e-13
 Identities = 55/254 (21%), Positives = 79/254 (31%), Gaps = 59/254 (23%)

Query: 606 SFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWL 665
               +     ++     LT  +P  L         L LS N L     +     T L  L
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 666 QLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIP 725
            L+    + ++         L  L LS+N L                           +P
Sbjct: 61  NLDRAE-LTKLQ-VDGTLPVLGTLDLSHNQLQS-------------------------LP 93

Query: 726 LEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMIL 785
           L    L  L +LD+S N ++ SLP                        G       L  L
Sbjct: 94  LLGQTLPALTVLDVSFNRLT-SLP-----------------------LGALRGLGELQEL 129

Query: 786 DLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLC-RLNQLQLLDLSNNNLHGH 843
            L  N L   +P  +     +L  L LA+NNL  E+P  L   L  L  L L  N+L+  
Sbjct: 130 YLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTI 187

Query: 844 IPSCFDNTTLHERY 857
               F +  L   +
Sbjct: 188 PKGFFGSHLLPFAF 201

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 70.1 bits (172), Expect = 4e-13
 Identities = 44/185 (23%), Positives = 70/185 (37%), Gaps = 14/185 (7%)

Query: 538 TKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMN 597
                L L  + L       +  + +L  L++ +        L++   L  L   ++S N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK---LQVDGTLPVLGTLDLSHN 87

Query: 598 ALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNN---NLEGHMFS 654
            L  S+P     +  L  LD+S N+LT  +P     G   L+ L L  N    L   + +
Sbjct: 88  QLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 655 RNFNLTNLIWLQLEGNHFVGEIPQSL-SKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHI 713
                  L  L L  N+   E+P  L +   +L  L L  NSL   IP+      +L   
Sbjct: 146 P---TPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFA 200

Query: 714 IMPKN 718
            +  N
Sbjct: 201 FLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 65.5 bits (160), Expect = 1e-11
 Identities = 48/198 (24%), Positives = 75/198 (37%), Gaps = 33/198 (16%)

Query: 129 SNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRN 188
            +  +L+L  NL     L++L   + LT L+L    L     ++   +L  L  L++  N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT---KLQVDGTLPVLGTLDLSHN 87

Query: 189 MIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSL-----ARLSSLRSLLLYDNRLE 243
            +        P     L  L V D+S N      L+SL       L  L+ L L  N L+
Sbjct: 88  QLQSL-----PLLGQTLPALTVLDVSFNR-----LTSLPLGALRGLGELQELYLKGNELK 137

Query: 244 GSIDVKEFDSLSNLEELDMSYNEIDNFEVPQ-ACSGLRKLSYLHLLRVGIRDGSKLLQSM 302
            ++          LE+L ++ N +   E+P    +GL  L  L L           L ++
Sbjct: 138 -TLPPGLLTPTPKLEKLSLANNNLT--ELPAGLLNGLENLDTLLL-------QENSLYTI 187

Query: 303 --GSF--PSLNTLDLSYN 316
             G F    L    L  N
Sbjct: 188 PKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 43/191 (22%), Positives = 67/191 (35%), Gaps = 42/191 (21%)

Query: 781 TLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNL 840
              IL LS N L       +   ++L+ L L    L  ++ +    L  L  LDLS+N L
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHNQL 89

Query: 841 HGHIPSCFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSIT 896
              +P         T L   +N  +SL                       +     +   
Sbjct: 90  Q-SLPLLGQTLPALTVLDVSFNRLTSLPL--------------------GALRGLGE--- 125

Query: 897 YTYQGRVPSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNI 955
                     L  L L  N L   +PP +     K++ L+L++NNL        + L N+
Sbjct: 126 ----------LQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174

Query: 956 ESLDLSYNKLS 966
           ++L L  N L 
Sbjct: 175 DTLLLQENSLY 185

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 60.9 bits (148), Expect = 5e-10
 Identities = 45/216 (20%), Positives = 71/216 (32%), Gaps = 45/216 (20%)

Query: 152 LSSLTSLDLSANRLK--------------------GSIDIKELDSLRDLEKLNIGRNMID 191
           ++S   ++     L                      +  +  L     L +LN+ R  + 
Sbjct: 9   VASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68

Query: 192 KFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEF 251
           K  V         L  L   DLS N    S+      L +L  L +  NRL  S+ +   
Sbjct: 69  KLQVD------GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLT-SLPLGAL 120

Query: 252 DSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSM--GSF---P 306
             L  L+EL +  NE+     P   +   KL  L L        +  L  +  G      
Sbjct: 121 RGLGELQELYLKGNELKTLP-PGLLTPTPKLEKLSL-------ANNNLTELPAGLLNGLE 172

Query: 307 SLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDD 342
           +L+TL L  N+      T  +GF     L   ++  
Sbjct: 173 NLDTLLLQENSL----YTIPKGFFGSHLLPFAFLHG 204

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 60.5 bits (147), Expect = 6e-10
 Identities = 48/196 (24%), Positives = 73/196 (37%), Gaps = 25/196 (12%)

Query: 255 SNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLS 314
            +   L +S N +  F          +L+ L+L R  +      LQ  G+ P L TLDLS
Sbjct: 31  KDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAELTK----LQVDGTLPVLGTLDLS 85

Query: 315 YNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSN 374
           +N                 +L  L +   R+   TS        +  +Q L L      N
Sbjct: 86  HNQLQSLPLL----GQTLPALTVLDVSFNRL---TSLPLGALRGLGELQELYLKG----N 134

Query: 375 NSRTLDQGLC-PLVHLQELHMADNDLRGSLPW-CLANMTSLRILDVSSNQLIGSISSSP- 431
             +TL  GL  P   L++L +A+N+L   LP   L  + +L  L +  N L     + P 
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL----YTIPK 189

Query: 432 -LIHLTSIEDLILSDN 446
                  +    L  N
Sbjct: 190 GFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 58.2 bits (141), Expect = 4e-09
 Identities = 39/189 (20%), Positives = 65/189 (34%), Gaps = 18/189 (9%)

Query: 584 DILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLAL 643
           D+    T+ ++S N L     ++      L  L+L   +LT ++     +    L +L L
Sbjct: 28  DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGTL--PVLGTLDL 84

Query: 644 SNNNLEGHMFSRNF-NLTNLIWLQLEGNHFVGEIPQSLS-----KCSSLQGLFLSNNSLS 697
           S+N L           L  L  L +  N        SL          LQ L+L  N L 
Sbjct: 85  SHNQL--QSLPLLGQTLPALTVLDVSFNRL-----TSLPLGALRGLGELQELYLKGNELK 137

Query: 698 GKIPRWLGNLTVLRHIIMPKNHIEGPIPLE-FCQLRILQILDISDNNISGSLPSCYDFVC 756
              P  L     L  + +  N++   +P      L  L  L + +N++       +    
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL 196

Query: 757 IEQVHLSKN 765
           +    L  N
Sbjct: 197 LPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 49/252 (19%), Positives = 81/252 (32%), Gaps = 61/252 (24%)

Query: 777  FNCLT-LMILDLSYNHLN---GNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQL 832
             + +   + ++    +L     ++P         + L L+ N L       L    +L  
Sbjct: 6    VSKVASHLEVNCDKRNLTALPPDLP------KDTTILHLSENLLYTFSLATLMPYTRLTQ 59

Query: 833  LDLSNNNLHGHIPSCFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESF 888
            L+L    L   +           TL   +N   SL                         
Sbjct: 60   LNLDRAEL-TKLQV-DGTLPVLGTLDLSHNQLQSLPL---------------------LG 96

Query: 889  DFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPS 947
                              L+ LD+S NR +  +P      L ++Q L L  N L    P 
Sbjct: 97   QTLPA-------------LTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPG 142

Query: 948  TFSNLRNIESLDLSYNKLSWKIPY----QLVELNTLAVFSVAYNNLSGKIPERAAQFATF 1003
              +    +E L L+ N L+ ++P      L  L+TL +     N+L   IP+        
Sbjct: 143  LLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQE---NSLYT-IPKGFFGSHLL 197

Query: 1004 NESSYEGNPFLC 1015
              +   GNP+LC
Sbjct: 198  PFAFLHGNPWLC 209

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 44.7 bits (106), Expect = 9e-05
 Identities = 53/236 (22%), Positives = 74/236 (31%), Gaps = 62/236 (26%)

Query: 387 VHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDN 446
                LH+++N L       L   T L  L++   +L           L  +  L LS N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL---TKLQVDGTLPVLGTLDLSHN 87

Query: 447 HFQIPISLEPLFNH-SRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITF 505
             Q   SL  L      L + D   N                 +L S  L  G   G+  
Sbjct: 88  QLQ---SLPLLGQTLPALTVLDVSFN-----------------RLTS--LPLGALRGLGE 125

Query: 506 PKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLR 565
            + LY    L+   L  +      P  LL    KL +LSL N                  
Sbjct: 126 LQELY----LKGNELKTL------PPGLLTPTPKLEKLSLAN------------------ 157

Query: 566 LLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNN 621
                 NN    +P  + + L  L    +  N+L  +IP  F   + L F  L  N
Sbjct: 158 ------NNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 72.3 bits (177), Expect = 4e-13
 Identities = 64/397 (16%), Positives = 125/397 (31%), Gaps = 48/397 (12%)

Query: 92  LNASLFTPFQQLESLDLRD----------NDIAGCVENEGLERLSR-LSNLKMLNLVGNL 140
               L   F  L SL L+            +  G      +  +S  L  LK ++    +
Sbjct: 64  TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMI 123

Query: 141 FNNSILSSLAR--LSSLTSLDLSANRLKGSIDIKEL-DSLRDLEKLNIGRNMIDK---FV 194
            ++  L  LA+     L +L L       +  +  +    R ++ L +  +   +     
Sbjct: 124 VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKW 183

Query: 195 VSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLA-RLSSLRSLLLYDNRLEGSIDVKEFDS 253
           + +  +  + L  L  +       +   L ++A    SL S+ +     E    V  F +
Sbjct: 184 LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKV--GDFEILELVGFFKA 241

Query: 254 LSNLEELDMS--YNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTL 311
            +NLEE        +I   E        RKL  L L  +G  +   L         +  L
Sbjct: 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFA---AQIRKL 298

Query: 312 DLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSN-- 369
           DL Y         T       +    L + + R  +    L+++ +    ++ L +    
Sbjct: 299 DLLYALL-----ETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGA 353

Query: 370 ---SSVSNNSRTLDQGLCPLVH----LQELHMADNDLR----GSLPWCLANMTSLRILDV 418
                         +GL  L      L+ + +  +D+      S+   L N+   R++ +
Sbjct: 354 DEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLL 413

Query: 419 SSNQLIGSIS-----SSPLIHLTSIEDLILSDNHFQI 450
              + I  +       S LI    +           +
Sbjct: 414 DREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGL 450

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 66.9 bits (163), Expect = 2e-11
 Identities = 68/502 (13%), Positives = 163/502 (32%), Gaps = 53/502 (10%)

Query: 200 KRLSRLNNLKVFDLS-GNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLE 258
           +R  ++++     ++    +  +      R  +LRSL            +K     +   
Sbjct: 42  RRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSL-----------KLKGKPRAAMFN 90

Query: 259 ELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSY-NN 317
            +  ++       V +  + LR+L  +H  R+ + D      +      L TL L   + 
Sbjct: 91  LIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG 150

Query: 318 FTETVTTTTQGFPHFKSLKELYMDD-ARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNS 376
           FT           H + +K L M++ +    +  +L  + +   S++ L+   +  +  S
Sbjct: 151 FTTD--GLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKIS 208

Query: 377 RTLDQGLCPLVH----LQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPL 432
               + L  +      L  + + D ++   L        +L      S      +     
Sbjct: 209 ---PKDLETIARNCRSLVSVKVGDFEI-LELVGFFKAAANLEEFCGGSLNEDIGMPEK-Y 263

Query: 433 IHLTSIEDLILSDNHFQIPISLEPLFNH-SRLKIFDAENNEINAEIIESHSLTTPNFQLQ 491
           ++L     L      +  P  +  LF   ++++  D     +  E  +  +L      L+
Sbjct: 264 MNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETE--DHCTLIQKCPNLE 321

Query: 492 SLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNW-----------LLENNTKL 540
            L   +   D             L+ +R+      +   +            L +   +L
Sbjct: 322 VLETRNVIGD-RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQEL 380

Query: 541 RQLSL----VNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDI--------LSR 588
             +++    + +  +      + +    RL+ + +      +PL+ G          L R
Sbjct: 381 EYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRR 440

Query: 589 LTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNL 648
              +       D  +         ++++ L     + E     + GC +L+ L +     
Sbjct: 441 FAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF 500

Query: 649 -EGHMFSRNFNLTNLIWLQLEG 669
            E  + +    L +L +L ++G
Sbjct: 501 SERAIAAAVTKLPSLRYLWVQG 522

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 65.3 bits (159), Expect = 7e-11
 Identities = 53/324 (16%), Positives = 109/324 (33%), Gaps = 29/324 (8%)

Query: 93  NASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVG--NLFNNSILSSLA 150
               F     LE       +     +    E+   L   + L  +G   +  N +     
Sbjct: 235 LVGFFKAAANLEEFCGGSLN----EDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFP 290

Query: 151 RLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDK--FVVSKGPKRLSRLN-- 206
             + +  LDL    L+       +    +LE L     + D+   V+++  K+L RL   
Sbjct: 291 FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIE 350

Query: 207 ---NLKVFDLSGNLFNNSILSSLAR-LSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDM 262
              + +  +    L +   L +LA+    L  + +Y + +           L NL +  +
Sbjct: 351 RGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRL 410

Query: 263 SY--------NEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSF-PSLNTLDL 313
                     +   +  V     G +KL                L  +G + P++  + L
Sbjct: 411 VLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLL 470

Query: 314 SYNNFT-ETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSV 372
            Y   + E +   ++G P   +L++L M       +   +      +PS++YL +     
Sbjct: 471 GYVGESDEGLMEFSRGCP---NLQKLEMRGCCF--SERAIAAAVTKLPSLRYLWVQGYRA 525

Query: 373 SNNSRTLDQGLCPLVHLQELHMAD 396
           S   + L Q   P  +++ +    
Sbjct: 526 SMTGQDLMQMARPYWNIELIPSRR 549

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 61.9 bits (150), Expect = 8e-10
 Identities = 78/583 (13%), Positives = 148/583 (25%), Gaps = 84/583 (14%)

Query: 137 VGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVS 196
           +   +  +      R  +L SL L               ++ +L   N G        V+
Sbjct: 57  MALCYTATPDRLSRRFPNLRSLKLKGKP---------RAAMFNLIPENWGG------YVT 101

Query: 197 KGPKRLSR-LNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLS 255
                +S  L  LK       + ++  L  LA+                           
Sbjct: 102 PWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKA-----------------------RAD 138

Query: 256 NLEELDMSY-NEIDNFEVPQACSGLRKLSYLHLLR-VGIRDGSKLLQSMG-SFPSLNTLD 312
           +LE L +   +      +    +  RK+  L +          K L  +     SL  L+
Sbjct: 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLN 198

Query: 313 LSYNNFTE-TVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSS 371
                F + +         + +SL  + + D  I     F +       +++     + +
Sbjct: 199 FYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA----AANLEEFCGGSLN 254

Query: 372 VSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSP 431
                      L     L  L ++       +P        +R LD+    L      + 
Sbjct: 255 EDIGMPEKYMNLVFPRKLCRLGLSYMGPNE-MPILFPFAAQIRKLDLLYALLETEDHCTL 313

Query: 432 LIHLTSIEDLILSDNHFQIPISLEPLFNH-SRLKIFDAENNEINAEIIESHSLTTPNFQL 490
           +    ++E L   +        LE L  +  +LK    E       + +   L +     
Sbjct: 314 IQKCPNLEVLETRNVIGD--RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR--- 368

Query: 491 QSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVN--- 547
                                  +LEY+ +    +  E    +      L    LV    
Sbjct: 369 -------------GLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDR 415

Query: 548 ------DSLVGPFRLPIHSHKQLRLLDVSKN--NFQGHIPLEIGDILSRLTVFNISMNAL 599
                   L    R  +   K+LR                  IG     +    +     
Sbjct: 416 EERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGE 475

Query: 600 -DGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNL---EGHMFSR 655
            D  +         LQ L++     +            SLR L +           +   
Sbjct: 476 SDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQM 535

Query: 656 NFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSG 698
                N+  +       V +  +            L+  SL+G
Sbjct: 536 ARPYWNIELIPSRRVPEVNQQGEIREMEHPAH--ILAYYSLAG 576

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 59.6 bits (144), Expect = 4e-09
 Identities = 41/305 (13%), Positives = 87/305 (28%), Gaps = 37/305 (12%)

Query: 94  ASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLS 153
             LF    Q+  LDL    +      +    + +  NL++L     + +  +        
Sbjct: 286 PILFPFAAQIRKLDLLYALL---ETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCK 342

Query: 154 SLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSR-LNNLKVFD 212
            L  L +     +                   G    +  V  +G   L++    L+   
Sbjct: 343 QLKRLRIERGADE------------------QGMEDEEGLVSQRGLIALAQGCQELEYMA 384

Query: 213 LSGNLFNNSILSSLAR----LSSLRSLLLYDNRLEGSIDVKE-----FDSLSNLEELDMS 263
           +  +   N  L S+      L   R +LL        + +             L      
Sbjct: 385 VYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFY 444

Query: 264 YN--EIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTET 321
                + +  +         + ++ L  VG  D   L++     P+L  L++    F+E 
Sbjct: 445 LRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEG-LMEFSRGCPNLQKLEMRGCCFSE- 502

Query: 322 VTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSN-SSVSNNSRTLD 380
                       SL+ L++   R ++    L  +     +I+ +       V+      +
Sbjct: 503 -RAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIRE 561

Query: 381 QGLCP 385
                
Sbjct: 562 MEHPA 566

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 68.2 bits (167), Expect = 4e-13
 Identities = 49/168 (29%), Positives = 65/168 (38%), Gaps = 27/168 (16%)

Query: 105 SLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANR 164
            L      I           LS L   K L L  N      +SSL+ + +L  L L  N 
Sbjct: 29  ELHGMIPPIEKMDAT-----LSTLKACKHLALSTNNI--EKISSLSGMENLRILSLGRNL 81

Query: 165 LKGSIDIKELDSLRD-LEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNN-SI 222
           +K    I+ LD++ D LE+L I  N I           + +L NL+V  +S N   N   
Sbjct: 82  IK---KIENLDAVADTLEELWISYNQIASL------SGIEKLVNLRVLYMSNNKITNWGE 132

Query: 223 LSSLARLSSLRSLLLYDNRLEGSIDVKEFDS---------LSNLEELD 261
           +  LA L  L  LLL  N L          S         L NL++LD
Sbjct: 133 IDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 62.4 bits (152), Expect = 5e-11
 Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 15/118 (12%)

Query: 100 FQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLS-SLTSL 158
            +  + L L  N+I      E +  LS + NL++L+L  NL     + +L  ++ +L  L
Sbjct: 47  LKACKHLALSTNNI------EKISSLSGMENLRILSLGRNLI--KKIENLDAVADTLEEL 98

Query: 159 DLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGN 216
            +S N++     +  ++ L +L  L +  N I  +       +L+ L+ L+   L+GN
Sbjct: 99  WISYNQIA---SLSGIEKLVNLRVLYMSNNKITNW---GEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 62.0 bits (151), Expect = 6e-11
 Identities = 34/171 (19%), Positives = 66/171 (38%), Gaps = 37/171 (21%)

Query: 117 VENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDS 176
            E       +    +++  ++  +    + ++L+ L +   L LS N ++    I  L  
Sbjct: 14  FEERKSVVATEAEKVELHGMIPPIEK--MDATLSTLKACKHLALSTNNIE---KISSLSG 68

Query: 177 LRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLL 236
           + +L  L++GRN+I         K++  L+ +                      +L  L 
Sbjct: 69  MENLRILSLGRNLI---------KKIENLDAV--------------------ADTLEELW 99

Query: 237 LYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHL 287
           +  N++     +   + L NL  L MS N+I N+      + L KL  L L
Sbjct: 100 ISYNQIA---SLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLL 147

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 30/140 (21%), Positives = 57/140 (40%), Gaps = 21/140 (15%)

Query: 331 HFKSLKELYMDDARIALNTSFLQIIG-ESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHL 389
             K+ K L +    I       +I     M +++ LSL      N  + ++        L
Sbjct: 46  TLKACKHLALSTNNIE------KISSLSGMENLRILSLGR----NLIKKIENLDAVADTL 95

Query: 390 QELHMADN---DLRGSLPWCLANMTSLRILDVSSNQLIGSISS-SPLIHLTSIEDLILSD 445
           +EL ++ N    L G     +  + +LR+L +S+N+ I +      L  L  +EDL+L+ 
Sbjct: 96  EELWISYNQIASLSG-----IEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAG 149

Query: 446 NHFQIPISLEPLFNHSRLKI 465
           N            +  R+++
Sbjct: 150 NPLYNDYKENNATSEYRIEV 169

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 26/128 (20%), Positives = 58/128 (45%), Gaps = 9/128 (7%)

Query: 357 ESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRIL 416
            ++ + ++L+LS     NN   +   L  + +L+ L +  N ++  +    A   +L  L
Sbjct: 45  STLKACKHLALST----NNIEKIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEEL 98

Query: 417 DVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAE 476
            +S NQ I S+S   +  L ++  L +S+N       ++ L    +L+      N +  +
Sbjct: 99  WISYNQ-IASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155

Query: 477 IIESHSLT 484
             E+++ +
Sbjct: 156 YKENNATS 163

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 37/171 (21%), Positives = 65/171 (38%), Gaps = 40/171 (23%)

Query: 675 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRIL 734
           ++  +LS   + + L LS N++  KI   L  +  LR + + +N I+    L+      L
Sbjct: 39  KMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIKKIENLDAV-ADTL 95

Query: 735 QILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNG 794
           + L IS N I+           +  +                   + L +L +S N +  
Sbjct: 96  EELWISYNQIA----------SLSGIE----------------KLVNLRVLYMSNNKITN 129

Query: 795 -NIPDRVDGLSQLSYLILAHNNLEGEVPIQ----------LCRLNQLQLLD 834
               D++  L +L  L+LA N L  +              + RL  L+ LD
Sbjct: 130 WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 18/119 (15%)

Query: 558 IHSHKQLRLLDVSKNNFQGHIPLEIGDI-----LSRLTVFNISMNALDGSIPSSFGNMNF 612
           + + K  + L +S NN        I  I     +  L + ++  N +   I +     + 
Sbjct: 44  LSTLKACKHLALSTNN--------IEKISSLSGMENLRILSLGRNLIK-KIENLDAVADT 94

Query: 613 LQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEG-HMFSRNFNLTNLIWLQLEGN 670
           L+ L +S NQ+   +   +    V+LR L +SNN +       +   L  L  L L GN
Sbjct: 95  LEELWISYNQIA-SL-SGIE-KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 5/81 (6%)

Query: 910 LDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKI 969
           L LS N  I  I   +  +  ++ L+L  N +   I +  +    +E L +SYN+++  +
Sbjct: 53  LALSTNN-IEKISS-LSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIA-SL 108

Query: 970 PYQLVELNTLAVFSVAYNNLS 990
              + +L  L V  ++ N ++
Sbjct: 109 S-GIEKLVNLRVLYMSNNKIT 128

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 72.1 bits (176), Expect = 4e-13
 Identities = 35/155 (22%), Positives = 59/155 (38%), Gaps = 15/155 (9%)

Query: 118 ENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLS-----SLTSLDLSANRLKGSIDIK 172
           E E L+  S L  +  +         S       +       +  L L+   L     + 
Sbjct: 401 EKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT---VLC 457

Query: 173 ELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSL 232
            L+ L  +  L++  N +        P  L+ L  L+V   S N   N  +  +A L  L
Sbjct: 458 HLEQLLLVTHLDLSHNRL-----RALPPALAALRCLEVLQASDNALEN--VDGVANLPRL 510

Query: 233 RSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEI 267
           + LLL +NRL+ S  ++   S   L  L++  N +
Sbjct: 511 QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 69.4 bits (169), Expect = 3e-12
 Identities = 41/201 (20%), Positives = 72/201 (35%), Gaps = 18/201 (8%)

Query: 95  SLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLK----MLNLVGNLFNNSILSSLA 150
            LF     +E   +  +++  C E + LE  ++   L     M  L   L+    L   +
Sbjct: 350 QLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS 409

Query: 151 RLSSLTSLDLSANRLKGSIDI----KELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLN 206
            L ++  +  +      S  +           D+  L++    +           L +L 
Sbjct: 410 TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL------CHLEQLL 463

Query: 207 NLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNE 266
            +   DLS N    ++  +LA L  L  L   DN LE   +V    +L  L+EL +  N 
Sbjct: 464 LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE---NVDGVANLPRLQELLLCNNR 519

Query: 267 IDNFEVPQACSGLRKLSYLHL 287
           +      Q      +L  L+L
Sbjct: 520 LQQSAAIQPLVSCPRLVLLNL 540

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 68.6 bits (167), Expect = 7e-12
 Identities = 46/273 (16%), Positives = 101/273 (36%), Gaps = 34/273 (12%)

Query: 206 NNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYN 265
            +L    L+  L  ++         S +  +L  +R E     ++  +   L   ++S  
Sbjct: 302 CDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWC--RDSATDEQLFRCELSVE 359

Query: 266 EIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTT 325
           +    +           S   L  +   +   LL  +    +L+ L              
Sbjct: 360 KSTVLQSEL-------ESCKELQELEPENKWCLLTIILLMRALDPLLYE----------- 401

Query: 326 TQGFPHFKSLKEL-----YMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLD 380
            +   +F +LK +        D   +       ++      ++ L L++  ++       
Sbjct: 402 KETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC---- 457

Query: 381 QGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIED 440
             L  L+ +  L ++ N LR +LP  LA +  L +L  S N L    +   + +L  +++
Sbjct: 458 -HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE---NVDGVANLPRLQE 512

Query: 441 LILSDNHFQIPISLEPLFNHSRLKIFDAENNEI 473
           L+L +N  Q   +++PL +  RL + + + N +
Sbjct: 513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 63.6 bits (154), Expect = 2e-10
 Identities = 52/361 (14%), Positives = 102/361 (28%), Gaps = 44/361 (12%)

Query: 38  LKLFFIDPYN--------YLLDWVDDEGATDCCQWER----------VSCNNTMGRVVVL 79
              FF DP +        +LL   +      C    R                     +L
Sbjct: 216 QNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLL 275

Query: 80  DLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGN 139
            +         +           +   DL    +   +       +   S+ +   ++  
Sbjct: 276 LMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLK 335

Query: 140 LFNNSILSSLARLSSLTSLDLSANRLKGS-------IDIKELDSLRDLEKLNIGRNMIDK 192
                     A    L   +LS  +            +++EL+       L I   M   
Sbjct: 336 DRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRAL 395

Query: 193 FVVSKGPKRLSRLNNLKVFDLSGNLFNNSILS--------SLARLSSLRSLLLYDNRLEG 244
             +    + L   + LK  D     + + + S             + +R L L    L  
Sbjct: 396 DPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT- 454

Query: 245 SIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGS 304
              +   + L  +  LD+S+N +    +P A + LR L  L      + +    +  + +
Sbjct: 455 --VLCHLEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALEN----VDGVAN 506

Query: 305 FPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQY 364
            P L  L L  N   ++     Q       L  L +    +       + + E +PS+  
Sbjct: 507 LPRLQELLLCNNRLQQS--AAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564

Query: 365 L 365
           +
Sbjct: 565 I 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 62.5 bits (151), Expect = 6e-10
 Identities = 39/261 (14%), Positives = 80/261 (30%), Gaps = 15/261 (5%)

Query: 737 LDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNI 796
               ++ +              Q          +           L   +LS       +
Sbjct: 306 AASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKST-VL 364

Query: 797 PDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHER 856
              ++   +L  L   +      + + +  L+ L     +              +TL   
Sbjct: 365 QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF----------STLKAV 414

Query: 857 YNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNR 916
               ++      S  ++    +  +   +       K +T         L++ LDLS NR
Sbjct: 415 DPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNR 474

Query: 917 LIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS-WKIPYQLVE 975
           L   +PP +  L  ++ L  S N L   +    +NL  ++ L L  N+L        LV 
Sbjct: 475 LR-ALPPALAALRCLEVLQASDNALEN-VDG-VANLPRLQELLLCNNRLQQSAAIQPLVS 531

Query: 976 LNTLAVFSVAYNNLSGKIPER 996
              L + ++  N+L  +   +
Sbjct: 532 CPRLVLLNLQGNSLCQEEGIQ 552

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.5 bits (138), Expect = 2e-08
 Identities = 46/299 (15%), Positives = 96/299 (32%), Gaps = 20/299 (6%)

Query: 373 SNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPL 432
                +    L  +V    L +      G        +  L    ++      +      
Sbjct: 264 PLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWT 323

Query: 433 IHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQS 492
              +  E ++L D                R ++   ++  + +E+     L     + + 
Sbjct: 324 GSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKW 383

Query: 493 LLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVG 552
            LL+      I   + L +    E   L +    +            LR   L+      
Sbjct: 384 CLLTI-----ILLMRAL-DPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLE----- 432

Query: 553 PFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNF 612
              +    +  +R+L ++  +      L   + L  +T  ++S N L  ++P +   +  
Sbjct: 433 -NSVLKMEYADVRVLHLAHKDLTV---LCHLEQLLLVTHLDLSHNRLR-ALPPALAALRC 487

Query: 613 LQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNF-NLTNLIWLQLEGN 670
           L+ L  S+N L   +   +A     L+ L L NN L+     +   +   L+ L L+GN
Sbjct: 488 LEVLQASDNALE-NVDG-VA-NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 70.3 bits (172), Expect = 2e-12
 Identities = 77/514 (14%), Positives = 154/514 (29%), Gaps = 74/514 (14%)

Query: 202 LSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELD 261
           + R   ++  +L G              +    +                 S + LEE+ 
Sbjct: 62  IRRFPKVRSVELKGKP----------HFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIR 111

Query: 262 MSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTE- 320
           +    + +  +       +    L L          L     +  +L  LDL  ++  + 
Sbjct: 112 LKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDV 171

Query: 321 TVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLD 380
           +    +     + SL  L +      ++ S L+ +    P+++ L L+ +       TL 
Sbjct: 172 SGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLL 231

Query: 381 QGLCPLVHL---QELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTS 437
           Q    L  L           D+   L   L+    LR L    +        + L  + S
Sbjct: 232 QRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWD-----AVPAYLPAVYS 286

Query: 438 IEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSS 497
                                  SRL   +     + +  +       P   LQ L +  
Sbjct: 287 ---------------------VCSRLTTLNLSYATVQSYDLVKLLCQCPK--LQRLWVLD 323

Query: 498 GYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLP 557
              D            DL  +R+   +         +E N  L +  LV  S+       
Sbjct: 324 YIED-AGLEVLASTCKDLRELRVFPSEPFV------MEPNVALTEQGLV--SVS------ 368

Query: 558 IHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNIS-----------MNALDGSIPSS 606
                +L  +            + I      +T F +            +  LD    + 
Sbjct: 369 -MGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAI 427

Query: 607 FGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNL--EGHMFSRNFNLTNLIW 664
             +   L+ L LS   LT ++ E++      +  L+++       G M        +L  
Sbjct: 428 VEHCKDLRRLSLSGL-LTDKVFEYIGTYAKKMEMLSVAFAGDSDLG-MHHVLSGCDSLRK 485

Query: 665 LQLEGNHFVGE-IPQSLSKCSSLQGLFLSNNSLS 697
           L++    F  + +  + SK  +++ L++S+ S+S
Sbjct: 486 LEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 69.5 bits (170), Expect = 4e-12
 Identities = 61/414 (14%), Positives = 136/414 (32%), Gaps = 67/414 (16%)

Query: 92  LNASLFTPFQQLESLDLR-----------DNDIAGCVENEGLERLSRLSNLKMLNLVGNL 140
             A++   F ++ S++L+            +   G V        S  + L+ + L   +
Sbjct: 57  SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV 116

Query: 141 FNNSILSSLAR-LSSLTSLDLSANRLKGSIDIKEL-DSLRDLEKLNIGRNMIDKF----- 193
             +  L  +A+   +   L LS+     +  +  +  + R+L++L++  + +D       
Sbjct: 117 VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWL 176

Query: 194 -VVSKGPKRLSRLN---------------------NLKVFDLSGNLFNNSILSSLARLSS 231
                    L  LN                     NLK   L+  +    + + L R   
Sbjct: 177 SHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQ 236

Query: 232 LRSLLLYDNRLEGSIDV-----KEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLH 286
           L  L       E   DV             L  L   ++      +P   S   +L+ L+
Sbjct: 237 LEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWD-AVPAYLPAVYSVCSRLTTLN 295

Query: 287 LLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLK----ELYMDD 342
           L    ++    L++ +   P L  L +        +          + L+    E ++ +
Sbjct: 296 LSYATVQSYD-LVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVME 354

Query: 343 ARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNS-RTLDQG--------LCPLVHLQELH 393
             +AL    L  +    P ++ +      ++N +  T+ +         LC +      +
Sbjct: 355 PNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDY 414

Query: 394 MADNDLRGSLPWCLANMTSLRILDVS---SNQLIGSISSSPLIHLTSIEDLILS 444
           +    L       + +   LR L +S   ++++   I +    +   +E L ++
Sbjct: 415 LTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGT----YAKKMEMLSVA 464

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 64.9 bits (158), Expect = 1e-10
 Identities = 75/558 (13%), Positives = 172/558 (30%), Gaps = 77/558 (13%)

Query: 124 RLSRLSNLKMLNL-VGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEK 182
               +       + +GN +  S  + + R   + S++L                      
Sbjct: 36  SWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPH--------------FAD 81

Query: 183 LNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLAR-LSSLRSLLLYDNR 241
            N+  +    +V        S    L+   L   +  +  L  +A+   + + L+L    
Sbjct: 82  FNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE 141

Query: 242 LEGSIDVKEF-DSLSNLEELDMSYNEIDNFE---VPQACSGLRKLSYLHLLRVGIRDGSK 297
              +  +     +  NL+ELD+  +++D+     +         L  L++  +       
Sbjct: 142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFS 201

Query: 298 LLQSMGSF-PSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIG 356
            L+ + +  P+L +L L+       +            L+EL            +   + 
Sbjct: 202 ALERLVTRCPNLKSLKLNRA---VPLEKLATLLQRAPQLEELGT--------GGYTAEVR 250

Query: 357 ESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRIL 416
             + S   ++LS                    L+ L    + +   LP   +  + L  L
Sbjct: 251 PDVYSGLSVALSG----------------CKELRCLSGFWDAVPAYLPAVYSVCSRLTTL 294

Query: 417 DVSSNQLIGSISSSPLIHLTSIEDLIL----SDNHFQIPISLEPLFNHSRLKIFDAENNE 472
           ++S   +        L     ++ L +     D   ++  S        R+   +    E
Sbjct: 295 NLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVME 354

Query: 473 INAEIIES--HSLTTPNFQLQSLLLSSGYRDGIT---FPKFLYNQHDLEYVRLSHIKMNE 527
            N  + E    S++    +L+S+L    +   +T         N+ ++   RL  I+   
Sbjct: 355 PNVALTEQGLVSVSMGCPKLESVLY---FCRQMTNAALITIARNRPNMTRFRLCIIEPKA 411

Query: 528 EFPNW----------LLENNTKLRQLSL---VNDSLVGPFRLPIHSHKQLRLLDVSKNNF 574
                          ++E+   LR+LSL   + D +           K++ +L V+    
Sbjct: 412 PDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYI---GTYAKKMEMLSVAFAGD 468

Query: 575 QGHIPLEIGDILSRLTVFNIS-MNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAM 633
                  +      L    I      D ++ ++   +  ++ L +S+  ++    + L  
Sbjct: 469 SDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQ 528

Query: 634 GCVSLRSLALSNNNLEGH 651
               L    +        
Sbjct: 529 KMPKLNVEVIDERGAPDS 546

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 58.8 bits (142), Expect = 8e-09
 Identities = 47/350 (13%), Positives = 100/350 (28%), Gaps = 56/350 (16%)

Query: 94  ASLFTPFQQLESLDLRD--NDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLAR 151
           A+L     QLE L       ++   V +     LS    L+ L+   +     + +  + 
Sbjct: 228 ATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSV 287

Query: 152 LSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVF 211
            S LT+L+LS   +             DL KL                  L +   L+  
Sbjct: 288 CSRLTTLNLSYATV---QS-------YDLVKL------------------LCQCPKLQRL 319

Query: 212 DLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEF---------DSLSNLEELDM 262
            +   + +  +    +    LR L ++ +                         LE +  
Sbjct: 320 WVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY 379

Query: 263 SYNEIDN---FEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMG------SFPSLNTLDL 313
              ++ N     + +    + +     +        +     +G          L  L L
Sbjct: 380 FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSL 439

Query: 314 SYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVS 373
           S      T         + K ++ L +  A  +     +  +     S++ L + +    
Sbjct: 440 SGL---LTDKVFEYIGTYAKKMEMLSVAFAGDSDLG--MHHVLSGCDSLRKLEIRDCPFG 494

Query: 374 NNSRTLDQGLCPLVHLQELHMADNDL-RGSLPWCLANMTSLRILDVSSNQ 422
           +  + L      L  ++ L M+   +  G+       M  L +  +    
Sbjct: 495 D--KALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG 542

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 68.6 bits (168), Expect = 3e-12
 Identities = 57/369 (15%), Positives = 114/369 (30%), Gaps = 52/369 (14%)

Query: 81  LSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNL 140
           LS  +R     + A L  P + L++L+          +  G      L   ++L+ +   
Sbjct: 7   LSAHNRA----VLAQLGCPIKNLDALEN----AQAIKKKLGKLGRQVLPPSELLDHLFFH 58

Query: 141 FN-NSILSSLARLSSLTSLDLSANRLKGSIDIKEL-----DSLRDLEKLNIGRNMIDKFV 194
           +   +   S   LSSL  L+L+  R+   +    +          L+++N+    +D   
Sbjct: 59  YEFQNQRFSAEVLSSLRQLNLAGVRM-TPVKCTVVAAVLGSGRHALDEVNLASCQLD--- 114

Query: 195 VSKGPKRLSR-LNNLKVFDLSGNLFNNSILSSLARL-----SSLRSLLLYDNRLEGSIDV 248
              G + L       +   L  N         L  L       + +L L +N L  +  V
Sbjct: 115 -PAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPL-TAAGV 172

Query: 249 KEF-DSLS---NLEELDMSYNEIDNFEVPQACSGLR---KLSYLHLLRVGIRD-GSKLLQ 300
               + L+   ++  L + +  + +  +    + L    +L  L++   G  D  +  L 
Sbjct: 173 AVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALA 232

Query: 301 SM-GSFPSLNTLDLSYNNFTET-VTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGES 358
                 PSL  L L +N  +              +    + +        + +       
Sbjct: 233 RAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY------- 285

Query: 359 MPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANM----TSLR 414
                 LS       N +      +   + L    + D+      PW  A +      +R
Sbjct: 286 --WSVILS---EVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVR 340

Query: 415 ILDVSSNQL 423
            L       
Sbjct: 341 ALLEQLGSS 349

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 42/255 (16%), Positives = 81/255 (31%), Gaps = 27/255 (10%)

Query: 609 NMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLE-------GHMFSRNFNLTN 661
             + L  ++L++ QL       L    +  R L L  N+L          +     +   
Sbjct: 99  GRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH--DQCQ 156

Query: 662 LIWLQLEGNHF----VGEIPQSLSKCSSLQGLFLSNNSLSGK----IPRWLGNLTVLRHI 713
           +  L+L  N      V  + + L+  +S+  L L +  L  +    +   L     L+ +
Sbjct: 157 ITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQEL 216

Query: 714 IMPKNHIEGPIPLEFCQL----RILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHG 769
            +  N       L   +       L++L +  N +S           +         +  
Sbjct: 217 NVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE--GRQVLRDLGGAAEGGARVVV 274

Query: 770 QLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQL---CR 826
            L EGT  +    +IL     +LN     RV    +L    L  +      P +     R
Sbjct: 275 SLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLR 334

Query: 827 LNQ-LQLLDLSNNNL 840
           +   ++ L     + 
Sbjct: 335 VEGEVRALLEQLGSS 349

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 28/220 (12%), Positives = 60/220 (27%), Gaps = 39/220 (17%)

Query: 102 QLESLDLRDNDIAGCVENEGLERLSRL----SNLKMLNLVGNLFNN----SILSSLARLS 153
           Q+ +L L +N +       G+  L       +++  L+L+     +     + + L R  
Sbjct: 156 QITTLRLSNNPL----TAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR 211

Query: 154 SLTSLDLSANRL--KGSIDIKE-LDSLRDLEKLNIGRNMIDKFVV---SKGPKRLSRLNN 207
            L  L+++ N      ++ +         LE L++  N +                    
Sbjct: 212 QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGAR 271

Query: 208 LKVFDLSGNLFNNSILSSLA---------------RLSSLRSLLLYDNRL--EGSIDVKE 250
           + V    G   +      L+               R   L    L D+R          +
Sbjct: 272 VVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQ 331

Query: 251 FDSL-SNLEELDMSYNEIDNFEVPQACSGLRK---LSYLH 286
              +   +  L        +     +     K     + H
Sbjct: 332 LLRVEGEVRALLEQLGSSGSPSGSWSHPQFEKGAGHHHHH 371

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 43/288 (14%), Positives = 97/288 (33%), Gaps = 39/288 (13%)

Query: 235 LLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRD 294
           LL   NR   +       +L  LE       ++      Q       L +L       ++
Sbjct: 6   LLSAHNRAVLAQLGCPIKNLDALENAQAIKKKL-GKLGRQVLPPSELLDHLFFHY-EFQN 63

Query: 295 GSKLLQSMGSFPSLNTLDLSYNNFT--------ETVTTTTQGFPHFKSLKELYMDDARIA 346
                + +    SL  L+L+    T          + +         +L E+ +   ++ 
Sbjct: 64  QRFSAEVL---SSLRQLNLAGVRMTPVKCTVVAAVLGSGR------HALDEVNLASCQL- 113

Query: 347 LNTSFLQIIGESMPSIQYLSLSNSSVSNNS-RTLDQGLC-PLVHLQELHMADNDLRGS-- 402
            + + L+ +       + L L  +S+   + + L   L      +  L +++N L  +  
Sbjct: 114 -DPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGV 172

Query: 403 --LPWCLANMTSLRILDVSSNQL----IGSISSSPLIHLTSIEDLILSDNHFQIP--ISL 454
             L   LA  TS+  L +    L    +  +++  L     +++L ++ N       ++L
Sbjct: 173 AVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ-LDRNRQLQELNVAYNGAGDTAALAL 231

Query: 455 -EPLFNHSRLKIFDAENNEINAE----IIESHSLTTPNFQLQSLLLSS 497
                 H  L++     NE+++E    + +         ++   L   
Sbjct: 232 ARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEG 279

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 63.8 bits (156), Expect = 5e-11
 Identities = 51/202 (25%), Positives = 80/202 (39%), Gaps = 47/202 (23%)

Query: 92  LNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLAR 151
           L +  F    +L  L L DN            +L  L           +F          
Sbjct: 52  LPSKAFHRLTKLRLLYLNDN------------KLQTLPA--------GIFK--------E 83

Query: 152 LSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRL-SRLNNLKV 210
           L +L +L ++ N+L+ ++ I   D L +L +L + RN +        P R+   L  L  
Sbjct: 84  LKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSL-----PPRVFDSLTKLTY 137

Query: 211 FDLSGNLFNNSILSSL-----ARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYN 265
             L  N      L SL      +L+SL+ L LY+N+L+  +    FD L+ L+ L +  N
Sbjct: 138 LSLGYNE-----LQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNN 191

Query: 266 EIDNFEVPQACSGLRKLSYLHL 287
           ++       A   L KL  L L
Sbjct: 192 QLKRVP-EGAFDSLEKLKMLQL 212

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 63.8 bits (156), Expect = 5e-11
 Identities = 50/225 (22%), Positives = 81/225 (36%), Gaps = 54/225 (24%)

Query: 230 SSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLR 289
           +  + L L  N+L  S+  K F  L+ L  L ++ N++           L+ L  L +  
Sbjct: 37  ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLP-AGIFKELKNLETLWV-- 92

Query: 290 VGIRDGSKLLQSM--GSF---PSLNTLDLSYNNFTETVTTTTQGFPH--FKSLKELYMDD 342
                    LQ++  G F    +L  L L  N             P   F SL +L    
Sbjct: 93  -----TDNKLQALPIGVFDQLVNLAELRLDRNQLKS--------LPPRVFDSLTKL---- 135

Query: 343 ARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLC-PLVHLQELHMADNDLRG 401
                                YLSL      N  ++L +G+   L  L+EL + +N L+ 
Sbjct: 136 --------------------TYLSLGY----NELQSLPKGVFDKLTSLKELRLYNNQLKR 171

Query: 402 SLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDN 446
                   +T L+ L + +NQL   +       L  ++ L L +N
Sbjct: 172 VPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 62.7 bits (153), Expect = 1e-10
 Identities = 48/193 (24%), Positives = 79/193 (40%), Gaps = 19/193 (9%)

Query: 129 SNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRN 188
           ++ K L+L  N  ++    +  RL+ L  L L+ N+L+ ++       L++LE L +  N
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDN 95

Query: 189 MIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSL-----ARLSSLRSLLLYDNRLE 243
            +     +       +L NL    L  N      L SL       L+ L  L L  N L+
Sbjct: 96  KL----QALPIGVFDQLVNLAELRLDRNQ-----LKSLPPRVFDSLTKLTYLSLGYNELQ 146

Query: 244 GSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMG 303
            S+    FD L++L+EL +  N++       A   L +L  L L    ++       +  
Sbjct: 147 -SLPKGVFDKLTSLKELRLYNNQLKRVP-EGAFDKLTELKTLKLDNNQLK--RVPEGAFD 202

Query: 304 SFPSLNTLDLSYN 316
           S   L  L L  N
Sbjct: 203 SLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 59.6 bits (145), Expect = 9e-10
 Identities = 49/198 (24%), Positives = 78/198 (39%), Gaps = 34/198 (17%)

Query: 660 TNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNN---SLSGKIPRWLGNLTVLRHIIMP 716
            +   L L+ N       ++  + + L+ L+L++N   +L   I + L NL  L    + 
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW---VT 93

Query: 717 KNHIEGPIPLE-FCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGT 775
            N ++  +P+  F QL  L  L +  N +  SLP                          
Sbjct: 94  DNKLQA-LPIGVFDQLVNLAELRLDRNQLK-SLPP-----------------------RV 128

Query: 776 FFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLD 834
           F +   L  L L YN L  ++P  V D L+ L  L L +N L+        +L +L+ L 
Sbjct: 129 FDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLK 187

Query: 835 LSNNNLHGHIPSCFDNTT 852
           L NN L       FD+  
Sbjct: 188 LDNNQLKRVPEGAFDSLE 205

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 59.2 bits (144), Expect = 1e-09
 Identities = 54/210 (25%), Positives = 73/210 (34%), Gaps = 44/210 (20%)

Query: 761 HLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEGE 819
            L  N L   L    F     L +L L+ N L   +P  +   L  L  L +  N L+  
Sbjct: 43  DLQSNKL-SSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-A 99

Query: 820 VPIQL-CRLNQLQLLDLSNNNLHGHIPSCFDN----TTLHERYNNGSSLQPFETSFVIMG 874
           +PI +  +L  L  L L  N L    P  FD+    T L   YN   SL           
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK--------- 150

Query: 875 GMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQI-GNLTKIQT 933
                        FD  T              L  L L  N+L   +P      LT+++T
Sbjct: 151 -----------GVFDKLTS-------------LKELRLYNNQL-KRVPEGAFDKLTELKT 185

Query: 934 LNLSHNNLAGPIPSTFSNLRNIESLDLSYN 963
           L L +N L       F +L  ++ L L  N
Sbjct: 186 LKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 56.1 bits (136), Expect = 1e-08
 Identities = 48/193 (24%), Positives = 69/193 (35%), Gaps = 43/193 (22%)

Query: 781 TLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLC-RLNQLQLLDLSNNN 839
               LDL  N L+         L++L  L L  N L+  +P  +   L  L+ L +++N 
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNK 96

Query: 840 LHGHIPSC-FDN----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKS 894
           L   +P   FD       L    N   SL P            V         FD  TK 
Sbjct: 97  LQ-ALPIGVFDQLVNLAELRLDRNQLKSLPP-----------RV---------FDSLTK- 134

Query: 895 ITYTYQGRVPSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLR 953
                       L+ L L  N L   +P  +   LT ++ L L +N L       F  L 
Sbjct: 135 ------------LTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLT 181

Query: 954 NIESLDLSYNKLS 966
            +++L L  N+L 
Sbjct: 182 ELKTLKLDNNQLK 194

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 56/214 (26%), Positives = 83/214 (38%), Gaps = 36/214 (16%)

Query: 617 DLSNNQLT---GEIPEHLAMGCVSLRSLALSNNN---LEGHMFSRNFNLTNLIWLQLEGN 670
           D S+ +LT     IP          + L L +N    L    F R   LT L  L L  N
Sbjct: 22  DCSSKKLTAIPSNIP-------ADTKKLDLQSNKLSSLPSKAFHR---LTKLRLLYLNDN 71

Query: 671 HFVGEIPQSLS-----KCSSLQGLFLSNN---SLSGKIPRWLGNLTVLRHIIMPKNHIEG 722
                  Q+L      +  +L+ L++++N   +L   +   L NL  LR   + +N ++ 
Sbjct: 72  KL-----QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR---LDRNQLKS 123

Query: 723 PIPLEFCQLRILQILDISDNNISGSLPS--CYDFVCIEQVHLSKNMLHGQLKEGTFFNCL 780
             P  F  L  L  L +  N +  SLP         ++++ L  N L  ++ EG F    
Sbjct: 124 LPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLT 181

Query: 781 TLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHN 814
            L  L L  N L        D L +L  L L  N
Sbjct: 182 ELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 39/174 (22%), Positives = 75/174 (43%), Gaps = 20/174 (11%)

Query: 585 ILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALS 644
           I +     ++  N L      +F  +  L+ L L++N+L   +P  +     +L +L ++
Sbjct: 35  IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVT 93

Query: 645 NNNLE---GHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLS-----KCSSLQGLFLSNNSL 696
           +N L+     +F     L NL  L+L+ N       +SL        + L  L L  N L
Sbjct: 94  DNKLQALPIGVFD---QLVNLAELRLDRNQL-----KSLPPRVFDSLTKLTYLSLGYNEL 145

Query: 697 SGKIPRWL-GNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLP 749
              +P+ +   LT L+ + +  N ++      F +L  L+ L + +N +   +P
Sbjct: 146 Q-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVP 197

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 40/154 (25%), Positives = 57/154 (37%), Gaps = 19/154 (12%)

Query: 92  LNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSL-- 149
           L A +F   + LE+L + DN +             +L NL  L L  N      L SL  
Sbjct: 76  LPAGIFKELKNLETLWVTDNKLQALPIGV----FDQLVNLAELRLDRNQ-----LKSLPP 126

Query: 150 ---ARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLN 206
                L+ LT L L  N L+ S+     D L  L++L +  N +             +L 
Sbjct: 127 RVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK----RVPEGAFDKLT 181

Query: 207 NLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDN 240
            LK   L  N        +   L  L+ L L +N
Sbjct: 182 ELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 56/240 (23%), Positives = 84/240 (35%), Gaps = 65/240 (27%)

Query: 411 TSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEP-LFNH-SRLKIFDA 468
              + LD+ SN+ + S+ S     LT +  L L+DN  Q   +L   +F     L+    
Sbjct: 37  ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNKLQ---TLPAGIFKELKNLETLWV 92

Query: 469 ENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEE 528
            +N                 +LQ+L    G  D +     L                   
Sbjct: 93  TDN-----------------KLQAL--PIGVFDQLVNLAELR------------------ 115

Query: 529 FPNWLLENNTKLRQLSL-VNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILS 587
                L+ N +L+ L   V DSL            +L  L +  N  Q  +P  + D L+
Sbjct: 116 -----LDRN-QLKSLPPRVFDSLT-----------KLTYLSLGYNELQ-SLPKGVFDKLT 157

Query: 588 RLTVFNISMNALDGSIPSS-FGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNN 646
            L    +  N L   +P   F  +  L+ L L NNQL   +PE        L+ L L  N
Sbjct: 158 SLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.0 bits (102), Expect = 3e-04
 Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 11/96 (11%)

Query: 907 LSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKL 965
           L  L ++ N+L   +P  +   L  +  L L  N L    P  F +L  +  L L YN+L
Sbjct: 87  LETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL 145

Query: 966 SWKIPY----QLVELNTLAVFSVAYNNLSGKIPERA 997
              +P     +L  L  L +    YNN   ++PE A
Sbjct: 146 -QSLPKGVFDKLTSLKELRL----YNNQLKRVPEGA 176

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 39/158 (24%), Positives = 72/158 (45%), Gaps = 16/158 (10%)

Query: 296 SKLLQSM--GSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQ 353
           SK L ++          LDL  N  +   +     F     L+ LY++D ++    +   
Sbjct: 25  SKKLTAIPSNIPADTKKLDLQSNKLSSLPSKA---FHRLTKLRLLYLNDNKL---QTLPA 78

Query: 354 IIGESMPSIQYLSLSNSSVSNNSRTLDQGL-CPLVHLQELHMADNDLRGSLP-WCLANMT 411
            I + + +++ L +++    N  + L  G+   LV+L EL +  N L+ SLP     ++T
Sbjct: 79  GIFKELKNLETLWVTD----NKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLT 133

Query: 412 SLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQ 449
            L  L +  N+L  S+       LTS+++L L +N  +
Sbjct: 134 KLTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNNQLK 170

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 60.1 bits (146), Expect = 2e-10
 Identities = 27/132 (20%), Positives = 52/132 (39%), Gaps = 11/132 (8%)

Query: 158 LDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNL 217
           + L+A  ++      +  +     +L++    I            + L+     D S N 
Sbjct: 2   VKLTAELIE---QAAQYTNAVRDRELDLRGYKIPVI-----ENLGATLDQFDAIDFSDNE 53

Query: 218 FNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACS 277
                L     L  L++LL+ +NR+   I      +L +L EL ++ N +         +
Sbjct: 54  IRK--LDGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPLA 110

Query: 278 GLRKLSYLHLLR 289
            L+ L+YL +LR
Sbjct: 111 SLKSLTYLCILR 122

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 58.9 bits (143), Expect = 5e-10
 Identities = 29/140 (20%), Positives = 48/140 (34%), Gaps = 12/140 (8%)

Query: 133 MLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDS-LRDLEKLNIGRNMID 191
           M+ L   L   +  +          LDL   ++     I+ L + L   + ++   N I 
Sbjct: 1   MVKLTAELIEQA--AQYTNAVRDRELDLRGYKIP---VIENLGATLDQFDAIDFSDNEIR 55

Query: 192 KFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEF 251
           K            L  LK   ++ N            L  L  L+L +N L    D+   
Sbjct: 56  KL------DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPL 109

Query: 252 DSLSNLEELDMSYNEIDNFE 271
            SL +L  L +  N + N +
Sbjct: 110 ASLKSLTYLCILRNPVTNKK 129

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 56.6 bits (137), Expect = 3e-09
 Identities = 28/119 (23%), Positives = 44/119 (36%), Gaps = 9/119 (7%)

Query: 123 ERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEK 182
            + +     + L+L G      I +  A L    ++D S N ++    +     LR L+ 
Sbjct: 13  AQYTNAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEIR---KLDGFPLLRRLKT 68

Query: 183 LNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNN-SILSSLARLSSLRSLLLYDN 240
           L +  N I +     G      L +L    L+ N       L  LA L SL  L +  N
Sbjct: 69  LLVNNNRICRI----GEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 55.4 bits (134), Expect = 7e-09
 Identities = 25/115 (21%), Positives = 40/115 (34%), Gaps = 11/115 (9%)

Query: 102 QLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLS 161
           +   LDLR   I      E L     L     ++   N      L     L  L +L ++
Sbjct: 20  RDRELDLRGYKIP---VIENLGAT--LDQFDAIDFSDNEIRK--LDGFPLLRRLKTLLVN 72

Query: 162 ANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGN 216
            NR+   I      +L DL +L +  N + +         L+ L +L    +  N
Sbjct: 73  NNRIC-RIGEGLDQALPDLTELILTNNSLVEL---GDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 28/93 (30%), Positives = 37/93 (39%), Gaps = 6/93 (6%)

Query: 96  LFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSL 155
           L     Q +++D  DN+I        L+    L  LK L +  N            L  L
Sbjct: 37  LGATLDQFDAIDFSDNEI------RKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90

Query: 156 TSLDLSANRLKGSIDIKELDSLRDLEKLNIGRN 188
           T L L+ N L    D+  L SL+ L  L I RN
Sbjct: 91  TELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 24/131 (18%), Positives = 49/131 (37%), Gaps = 11/131 (8%)

Query: 317 NFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNS 376
             T  +      + +    +EL +   +I      ++ +G ++     +  S+    N  
Sbjct: 3   KLTAELIEQAAQYTNAVRDRELDLRGYKI----PVIENLGATLDQFDAIDFSD----NEI 54

Query: 377 RTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISS-SPLIHL 435
           R LD G   L  L+ L + +N +          +  L  L +++N  +  +    PL  L
Sbjct: 55  RKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS-LVELGDLDPLASL 112

Query: 436 TSIEDLILSDN 446
            S+  L +  N
Sbjct: 113 KSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 29/154 (18%), Positives = 53/154 (34%), Gaps = 11/154 (7%)

Query: 212 DLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFE 271
            L+  L   +  +        R L L   ++    ++    +L   + +D S NEI   +
Sbjct: 3   KLTAELIEQA--AQYTNAVRDRELDLRGYKIPVIENLGA--TLDQFDAIDFSDNEIRKLD 58

Query: 272 VPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPH 331
                  LR+L  L +    I    + L    + P L  L L+ N+  E           
Sbjct: 59  ---GFPLLRRLKTLLVNNNRICRIGEGLDQ--ALPDLTELILTNNSLVE--LGDLDPLAS 111

Query: 332 FKSLKELYMDDARIALNTSFLQIIGESMPSIQYL 365
            KSL  L +    +     +   +   +P ++ L
Sbjct: 112 LKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL 145

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 23/117 (19%), Positives = 43/117 (36%), Gaps = 7/117 (5%)

Query: 357 ESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRIL 416
            +    + L L           ++     L     +  +DN++R  L      +  L+ L
Sbjct: 16  TNAVRDRELDLRG----YKIPVIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTL 69

Query: 417 DVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEI 473
            V++N+ I  I       L  + +LIL++N       L+PL +   L       N +
Sbjct: 70  LVNNNR-ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 3/88 (3%)

Query: 658 NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPK 717
           N      L L G   +  I    +       +  S+N +  K+      L  L+ +++  
Sbjct: 17  NAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIR-KLDG-FPLLRRLKTLLVNN 73

Query: 718 NHIEGPIPLEFCQLRILQILDISDNNIS 745
           N I          L  L  L +++N++ 
Sbjct: 74  NRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 9/107 (8%)

Query: 736 ILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLN-- 793
           ++ ++   I        + V   ++ L    +   + E           +D S N +   
Sbjct: 1   MVKLTAELIE-QAAQYTNAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEIRKL 57

Query: 794 GNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNL 840
              P     L +L  L++ +N +          L  L  L L+NN+L
Sbjct: 58  DGFP----LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 100

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 27/115 (23%), Positives = 44/115 (38%), Gaps = 8/115 (6%)

Query: 534 LENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFN 593
             N  + R+L L    +     L   +  Q   +D S N  +    L+   +L RL    
Sbjct: 15  YTNAVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIR---KLDGFPLLRRLKTLL 70

Query: 594 ISMNALDGSIPSSFGNMNFLQFLDLSNNQLT--GEIPEHLAMGCVSLRSLALSNN 646
           ++ N +          +  L  L L+NN L   G++ + LA    SL  L +  N
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLA-SLKSLTYLCILRN 123

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 60.0 bits (146), Expect = 4e-10
 Identities = 29/113 (25%), Positives = 44/113 (38%), Gaps = 7/113 (6%)

Query: 604 PSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLE---GHMFSRNFNLT 660
           P +F     L+ +DLSNNQ++ E+      G  SL SL L  N +      +F     L 
Sbjct: 49  PGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEG---LF 104

Query: 661 NLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHI 713
           +L  L L  N        +     +L  L L +N L          L  ++ +
Sbjct: 105 SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTM 157

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 22/137 (16%)

Query: 139 NLFNNSILS----SLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFV 194
            L  N+I      + +    L  +DLS N++   +       LR L  L +  N I +  
Sbjct: 38  RLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITEL- 95

Query: 195 VSKGPKRL-SRLNNLKVFDLSGNLFNNSILSSLAR-----LSSLRSLLLYDNRLEGSIDV 248
               PK L   L +L++  L+ N      ++ L       L +L  L LYDN+L+ +I  
Sbjct: 96  ----PKSLFEGLFSLQLLLLNANK-----INCLRVDAFQDLHNLNLLSLYDNKLQ-TIAK 145

Query: 249 KEFDSLSNLEELDMSYN 265
             F  L  ++ + ++ N
Sbjct: 146 GTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 38/165 (23%), Positives = 57/165 (34%), Gaps = 28/165 (16%)

Query: 675 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRIL 734
           EIP +L    ++  + L  N++    P        LR I +  N I    P  F  LR L
Sbjct: 25  EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82

Query: 735 QILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNG 794
             L +  N I+  LP                          F    +L +L L+ N +N 
Sbjct: 83  NSLVLYGNKIT-ELPK-----------------------SLFEGLFSLQLLLLNANKIN- 117

Query: 795 NIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNN 838
            +       L  L+ L L  N L+         L  +Q + L+ N
Sbjct: 118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 10/132 (7%)

Query: 567 LDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPS-SFGNMNFLQFLDLSNNQLTG 625
           + + +N  +  IP        +L   ++S N +   +   +F  +  L  L L  N++T 
Sbjct: 37  IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT- 93

Query: 626 EIPEHLAMGCVSLRSLALSNNNLEG---HMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSK 682
           E+P+ L  G  SL+ L L+ N +       F    +L NL  L L  N        + S 
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQ---DLHNLNLLSLYDNKLQTIAKGTFSP 150

Query: 683 CSSLQGLFLSNN 694
             ++Q + L+ N
Sbjct: 151 LRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 32/182 (17%), Positives = 54/182 (29%), Gaps = 59/182 (32%)

Query: 785 LDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLC-RLNQLQLLDLSNNNLHG 842
           + L  N +   IP        +L  + L++N +  E+       L  L  L L  N +  
Sbjct: 37  IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKI-- 92

Query: 843 HIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGR 902
                             + L                        F+             
Sbjct: 93  ------------------TELPK--------------------SLFEGLFS--------- 105

Query: 903 VPSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLS 961
               L  L L+ N++   +      +L  +  L+L  N L      TFS LR I+++ L+
Sbjct: 106 ----LQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLA 160

Query: 962 YN 963
            N
Sbjct: 161 QN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 10/121 (8%)

Query: 735 QILDISDNNISGSLPSCYDFVCIEQV---HLSKNMLHGQLKEGTFFNCLTLMILDLSYNH 791
             + +  N I   +P    F   +++    LS N +  +L    F    +L  L L  N 
Sbjct: 35  TEIRLEQNTIK-VIPP-GAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNK 91

Query: 792 LNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQL-CRLNQLQLLDLSNNNLHGHIPSCFD 849
           +   +P  + +GL  L  L+L  N +   + +     L+ L LL L +N L       F 
Sbjct: 92  IT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149

Query: 850 N 850
            
Sbjct: 150 P 150

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 33/135 (24%), Positives = 57/135 (42%), Gaps = 23/135 (17%)

Query: 92  LNASLFTPFQQLESLDLRDNDIAGCVENEGLER--LSRLSNLKMLNLVGNLFNNSILSSL 149
           +    F+P+++L  +DL +N I        L       L +L  L L GN      ++ L
Sbjct: 47  IPPGAFSPYKKLRRIDLSNNQI------SELAPDAFQGLRSLNSLVLYGNK-----ITEL 95

Query: 150 -----ARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSR 204
                  L SL  L L+AN++   + +     L +L  L++  N +    ++KG    S 
Sbjct: 96  PKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQT--IAKGT--FSP 150

Query: 205 LNNLKVFDLSGNLFN 219
           L  ++   L+ N F 
Sbjct: 151 LRAIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 31/147 (21%), Positives = 53/147 (36%), Gaps = 24/147 (16%)

Query: 230 SSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHL-- 287
            ++  + L  N ++  I    F     L  +D+S N+I     P A  GLR L+ L L  
Sbjct: 32  ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELA-PDAFQGLRSLNSLVLYG 89

Query: 288 -----LRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDD 342
                L   + +G           SL  L L+ N            F    +L  L + D
Sbjct: 90  NKITELPKSLFEG---------LFSLQLLLLNANKIN---CLRVDAFQDLHNLNLLSLYD 137

Query: 343 ARIALNTSFLQIIGESMPSIQYLSLSN 369
            ++    +  +     + +IQ + L+ 
Sbjct: 138 NKL---QTIAKGTFSPLRAIQTMHLAQ 161

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 28/158 (17%), Positives = 48/158 (30%), Gaps = 40/158 (25%)

Query: 296 SKLLQSM--GSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQ 353
            K L  +      ++  + L  N               F   K+L               
Sbjct: 20  GKGLTEIPTNLPETITEIRLEQNTIKVIPPGA------FSPYKKL--------------- 58

Query: 354 IIGESMPSIQYLSLSNSSVSNNSRTLDQGLC-PLVHLQELHMADNDLRGSLPW-CLANMT 411
                    + + LSN    N    L       L  L  L +  N +   LP      + 
Sbjct: 59  ---------RRIDLSN----NQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLF 104

Query: 412 SLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQ 449
           SL++L +++N++   +       L ++  L L DN  Q
Sbjct: 105 SLQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQ 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 32/133 (24%), Positives = 49/133 (36%), Gaps = 9/133 (6%)

Query: 614 QFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNN---NLEGHMFSRNFNLTNLIWLQLEGN 670
             + L  N +   IP         LR + LSNN    L    F     L +L  L L GN
Sbjct: 35  TEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG---LRSLNSLVLYGN 90

Query: 671 HFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWL-GNLTVLRHIIMPKNHIEGPIPLEFC 729
                         SLQ L L+ N ++  +      +L  L  + +  N ++      F 
Sbjct: 91  KITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149

Query: 730 QLRILQILDISDN 742
            LR +Q + ++ N
Sbjct: 150 PLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 907 LSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKL 965
           L+ L L  N++   +P  +   L  +Q L L+ N +       F +L N+  L L  NKL
Sbjct: 82  LNSLVLYGNKI-TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL 140

Query: 966 S 966
            
Sbjct: 141 Q 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 9/92 (9%)

Query: 910 LDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS-- 966
           + L  N  I  IPP       K++ ++LS+N ++   P  F  LR++ SL L  NK++  
Sbjct: 37  IRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL 95

Query: 967 -WKIPYQLVELNTLAVFSVAYNNLSGKIPERA 997
              +   L  L  L    +  N ++  +   A
Sbjct: 96  PKSLFEGLFSLQLL---LLNANKIN-CLRVDA 123

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 61.4 bits (149), Expect = 5e-10
 Identities = 59/309 (19%), Positives = 113/309 (36%), Gaps = 41/309 (13%)

Query: 58  ATDCCQWERVSCNNTMGRVVVLDLSQTHRGEYWYLNASL-------FTPFQQLESLDLRD 110
           A+D   W+ +          V     +     +    S             +++ +DL +
Sbjct: 43  ASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSN 102

Query: 111 NDIAGCVENEGLERL-SRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSI 169
           +     +E   L  + S+ S L+ L+L G   ++ I+++LA+ S+L  L+LS        
Sbjct: 103 S----VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF 158

Query: 170 DIKEL-DSLRDLEKLNIGR--NMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSL 226
            ++ L  S   L++LN+    +  +K V          +  L +     NL  + + + +
Sbjct: 159 ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV 218

Query: 227 ARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLH 286
            R  +L  L L D+ +  +   +EF  L+ L+ L +S            C          
Sbjct: 219 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR-----------CY--------- 258

Query: 287 LLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIA 346
                I   +  L  +G  P+L TL +       T+    +  PH +     +   AR  
Sbjct: 259 ----DIIPET--LLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIARPT 312

Query: 347 LNTSFLQII 355
           +     Q I
Sbjct: 313 IGNKKNQEI 321

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 60.7 bits (147), Expect = 9e-10
 Identities = 44/250 (17%), Positives = 88/250 (35%), Gaps = 9/250 (3%)

Query: 200 KRLSRLNNLKVFDLSGNLFNNSILSS-LARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLE 258
           KR  RL + +    + +L   ++      RL S   +     R      + E  S   ++
Sbjct: 37  KRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQ 96

Query: 259 ELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSY-NN 317
            +D+S + I+   +    S   KL  L L  + + D    + ++    +L  L+LS  + 
Sbjct: 97  HMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPI--VNTLAKNSNLVRLNLSGCSG 154

Query: 318 FT-ETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNS 376
           F+   + T          L EL +              +     +I  L+LS    +   
Sbjct: 155 FSEFALQTLLSSCSR---LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK 211

Query: 377 RTLDQGLCPLVHLQELHMAD-NDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHL 435
             L   +    +L  L ++D   L+         +  L+ L +S    I   +   L  +
Sbjct: 212 SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI 271

Query: 436 TSIEDLILSD 445
            +++ L +  
Sbjct: 272 PTLKTLQVFG 281

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 46.4 bits (110), Expect = 3e-05
 Identities = 39/187 (20%), Positives = 71/187 (37%), Gaps = 8/187 (4%)

Query: 515 LEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSK-NN 573
           ++++ LS+  +     + +L   +KL+ LSL    L  P    +  +  L  L++S  + 
Sbjct: 95  VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG 154

Query: 574 FQGHIPLEIGDILSRLTVFNIS--MNALDGSIPSSFG-NMNFLQFLDLS--NNQLTGEIP 628
           F       +    SRL   N+S   +  +  +  +       +  L+LS     L     
Sbjct: 155 FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDL 214

Query: 629 EHLAMGCVSLRSLALSN-NNLEGHMFSRNFNLTNLIWLQLEGNHFVGEI-PQSLSKCSSL 686
             L   C +L  L LS+   L+   F   F L  L  L L   + +       L +  +L
Sbjct: 215 STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL 274

Query: 687 QGLFLSN 693
           + L +  
Sbjct: 275 KTLQVFG 281

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 59.7 bits (145), Expect = 6e-10
 Identities = 33/142 (23%), Positives = 50/142 (35%), Gaps = 18/142 (12%)

Query: 153 SSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFD 212
                L L+ N             L  L K+N   N I               + +    
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI----EEGAFEGASGVNEIL 87

Query: 213 LSGNLFNNSILSSL-----ARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEI 267
           L+ N      L ++       L SL++L+L  NR+   +    F  LS++  L +  N+I
Sbjct: 88  LTSNR-----LENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQI 141

Query: 268 DNFEVPQ-ACSGLRKLSYLHLL 288
               V   A   L  LS L+LL
Sbjct: 142 TT--VAPGAFDTLHSLSTLNLL 161

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 37/166 (22%), Positives = 65/166 (39%), Gaps = 41/166 (24%)

Query: 104 ESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILS----SLARLSSLTSLD 159
             L L +N+          ++L +L  +       N  NN I      +    S +  + 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKI-------NFSNNKITDIEEGAFEGASGVNEIL 87

Query: 160 LSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFN 219
           L++NRL+ ++  K    L  L+ L +  N            R++ + N   F        
Sbjct: 88  LTSNRLE-NVQHKMFKGLESLKTLMLRSN------------RITCVGN-DSFI------- 126

Query: 220 NSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYN 265
                    LSS+R L LYDN++  ++    FD+L +L  L++  N
Sbjct: 127 --------GLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 56.2 bits (136), Expect = 7e-09
 Identities = 30/131 (22%), Positives = 51/131 (38%), Gaps = 7/131 (5%)

Query: 567 LDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGE 626
           L ++ N F       I   L +L   N S N +      +F   + +  + L++N+L   
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-N 95

Query: 627 IPEHLAMGCVSLRSLALSNNNLE---GHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKC 683
           +   +  G  SL++L L +N +       F     L+++  L L  N      P +    
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRITCVGNDSFI---GLSSVRLLSLYDNQITTVAPGAFDTL 152

Query: 684 SSLQGLFLSNN 694
            SL  L L  N
Sbjct: 153 HSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 7/120 (5%)

Query: 735 QILDISDNNISGSLPSCYDFVCIEQVH---LSKNMLHGQLKEGTFFNCLTLMILDLSYNH 791
             L +++N  +  L +   F  + Q+     S N +   ++EG F     +  + L+ N 
Sbjct: 35  AELRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNR 92

Query: 792 LNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN 850
           L  N+  ++  GL  L  L+L  N +          L+ ++LL L +N +    P  FD 
Sbjct: 93  LE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.3 bits (113), Expect = 8e-06
 Identities = 26/181 (14%), Positives = 50/181 (27%), Gaps = 56/181 (30%)

Query: 785 LDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGH 843
           L L+ N         +   L QL  +  ++N +           + +  + L++N L   
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL--- 93

Query: 844 IPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRV 903
                    +  +                               F               
Sbjct: 94  -------ENVQHK------------------------------MFKGLES---------- 106

Query: 904 PSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSY 962
              L  L L  NR+   +       L+ ++ L+L  N +    P  F  L ++ +L+L  
Sbjct: 107 ---LKTLMLRSNRI-TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA 162

Query: 963 N 963
           N
Sbjct: 163 N 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 29/132 (21%), Positives = 49/132 (37%), Gaps = 23/132 (17%)

Query: 95  SLFTPFQQLESLDLRDNDIAGCVENEGLER--LSRLSNLKMLNLVGNLFNNSILSSL--- 149
            +F    QL  ++  +N I        +E       S +  + L  N      L ++   
Sbjct: 51  GIFKKLPQLRKINFSNNKI------TDIEEGAFEGASGVNEILLTSNR-----LENVQHK 99

Query: 150 --ARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNN 207
               L SL +L L +NR+   +       L  +  L++  N I    V+ G      L++
Sbjct: 100 MFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITT--VAPGA--FDTLHS 154

Query: 208 LKVFDLSGNLFN 219
           L   +L  N FN
Sbjct: 155 LSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 8/92 (8%)

Query: 360 PSIQYLSLSNSSVSNNSRTLDQG-LCPLVHLQELHMADNDLRGSLPW-CLANMTSLRILD 417
           P ++ ++ SN    N    +++G       + E+ +  N L  ++       + SL+ L 
Sbjct: 57  PQLRKINFSN----NKITDIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLM 111

Query: 418 VSSNQLIGSISSSPLIHLTSIEDLILSDNHFQ 449
           + SN++   + +   I L+S+  L L DN   
Sbjct: 112 LRSNRI-TCVGNDSFIGLSSVRLLSLYDNQIT 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 907 LSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKL 965
           ++ + L+ NRL   +  ++   L  ++TL L  N +      +F  L ++  L L  N++
Sbjct: 83  VNEILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI 141

Query: 966 S 966
           +
Sbjct: 142 T 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 44.3 bits (105), Expect = 8e-05
 Identities = 29/132 (21%), Positives = 49/132 (37%), Gaps = 6/132 (4%)

Query: 614 QFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNN---NLEGHMFSRNFNLTNLIWLQLEGN 670
             L L+NN+ T      +      LR +  SNN   ++E   F      + +  + L  N
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG---ASGVNEILLTSN 91

Query: 671 HFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQ 730
                  +      SL+ L L +N ++         L+ +R + +  N I    P  F  
Sbjct: 92  RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151

Query: 731 LRILQILDISDN 742
           L  L  L++  N
Sbjct: 152 LHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 32/145 (22%), Positives = 55/145 (37%), Gaps = 19/145 (13%)

Query: 230 SSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLR 289
                L L +N          F  L  L +++ S N+I + E   A  G   ++ + L  
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILL-- 88

Query: 290 VGIRDGSKLLQSM--GSF---PSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDAR 344
                 S  L+++    F    SL TL L  N  T     +   F    S++ L + D +
Sbjct: 89  -----TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDS---FIGLSSVRLLSLYDNQ 140

Query: 345 IALNTSFLQIIGESMPSIQYLSLSN 369
           I   T+      +++ S+  L+L  
Sbjct: 141 I---TTVAPGAFDTLHSLSTLNLLA 162

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 9/86 (10%)

Query: 910 LDLSCNRLIGHIPPQIG--NLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS- 966
           L L+ N     +        L +++ +N S+N +       F     +  + L+ N+L  
Sbjct: 37  LRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95

Query: 967 --WKIPYQLVELNTLAVFSVAYNNLS 990
              K+   L  L TL    +  N ++
Sbjct: 96  VQHKMFKGLESLKTL---MLRSNRIT 118

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 24/121 (19%), Positives = 44/121 (36%), Gaps = 6/121 (4%)

Query: 151 RLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKV 210
             +++  L L   +              +LE L++    +           L +L  LK 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV------SNLPKLPKLKK 75

Query: 211 FDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNF 270
            +LS N     +     +L +L  L L  N+L+    ++    L  L+ LD+   E+ N 
Sbjct: 76  LELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL 135

Query: 271 E 271
            
Sbjct: 136 N 136

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 55.9 bits (135), Expect = 4e-09
 Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 10/136 (7%)

Query: 153 SSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFD 212
           S  + +D+   R+   +  +   ++R+L   N   N        K     +   NL+   
Sbjct: 3   SGSSGMDMK-RRIHLELRNRTPAAVRELVLDNCKSNDG------KIEGLTAEFVNLEFLS 55

Query: 213 LSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEV 272
           L         +S+L +L  L+ L L +NR+         + L NL  L++S N++ +   
Sbjct: 56  LINVGL--ISVSNLPKLPKLKKLELSENRIF-GGLDMLAEKLPNLTHLNLSGNKLKDIST 112

Query: 273 PQACSGLRKLSYLHLL 288
            +    L  L  L L 
Sbjct: 113 LEPLKKLECLKSLDLF 128

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 54.4 bits (131), Expect = 1e-08
 Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 10/111 (9%)

Query: 78  VLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLV 137
           VLD  +++ G+       L   F  LE L L +  +        +  L +L  LK L L 
Sbjct: 30  VLDNCKSNDGKI----EGLTAEFVNLEFLSLINVGL------ISVSNLPKLPKLKKLELS 79

Query: 138 GNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRN 188
            N     +     +L +LT L+LS N+LK    ++ L  L  L+ L++   
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 54.0 bits (130), Expect = 2e-08
 Identities = 32/139 (23%), Positives = 51/139 (36%), Gaps = 12/139 (8%)

Query: 100 FQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLD 159
              +  L L   D     + +     +   NL+ L+L+        +S+L +L  L  L+
Sbjct: 23  PAAVRELVL---DNCKSNDGKIEGLTAEFVNLEFLSLINVGL--ISVSNLPKLPKLKKLE 77

Query: 160 LSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGN--- 216
           LS NR+         + L +L  LN+  N +         + L +L  LK  DL      
Sbjct: 78  LSENRIF-GGLDMLAEKLPNLTHLNLSGNKLKDI---STLEPLKKLECLKSLDLFNCEVT 133

Query: 217 LFNNSILSSLARLSSLRSL 235
             N+   S    L  L  L
Sbjct: 134 NLNDYRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.4 bits (118), Expect = 7e-07
 Identities = 26/116 (22%), Positives = 57/116 (49%), Gaps = 9/116 (7%)

Query: 332 FKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQE 391
             +++EL +D+ +   N   ++ +     ++++LSL N        ++   L  L  L++
Sbjct: 23  PAAVRELVLDNCKS--NDGKIEGLTAEFVNLEFLSLIN----VGLISVS-NLPKLPKLKK 75

Query: 392 LHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISS-SPLIHLTSIEDLILSDN 446
           L +++N + G L      + +L  L++S N+ +  IS+  PL  L  ++ L L + 
Sbjct: 76  LELSENRIFGGLDMLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.4 bits (118), Expect = 8e-07
 Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 5/122 (4%)

Query: 352 LQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMT 411
           L++   +  +++ L L N    +N   ++      V+L+ L + +  L  S+   L  + 
Sbjct: 16  LELRNRTPAAVRELVLDNCK--SNDGKIEGLTAEFVNLEFLSLINVGLI-SVS-NLPKLP 71

Query: 412 SLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENN 471
            L+ L++S N+ I          L ++  L LS N  +   +LEPL     LK  D  N 
Sbjct: 72  KLKKLELSENR-IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

Query: 472 EI 473
           E+
Sbjct: 131 EV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 28/106 (26%), Positives = 38/106 (35%), Gaps = 3/106 (2%)

Query: 616 LDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGE 675
           L L N +      E L    V+L  L+L N  L     S    L  L  L+L  N   G 
Sbjct: 29  LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS--VSNLPKLPKLKKLELSENRIFGG 86

Query: 676 IPQSLSKCSSLQGLFLSNNSLSG-KIPRWLGNLTVLRHIIMPKNHI 720
           +     K  +L  L LS N L        L  L  L+ + +    +
Sbjct: 87  LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 5/114 (4%)

Query: 726 LEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMIL 785
                +R L +LD   +N         +FV +E + L    L              L  L
Sbjct: 21  RTPAAVREL-VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI---SVSNLPKLPKLKKL 76

Query: 786 DLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQ-LCRLNQLQLLDLSNN 838
           +LS N + G +    + L  L++L L+ N L+    ++ L +L  L+ LDL N 
Sbjct: 77  ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.5 bits (95), Expect = 7e-04
 Identities = 29/170 (17%), Positives = 54/170 (31%), Gaps = 43/170 (25%)

Query: 253 SLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLD 312
           + + + EL                        L   +       K+      F +L  L 
Sbjct: 22  TPAAVRELV-----------------------LDNCKSND---GKIEGLTAEFVNLEFLS 55

Query: 313 LSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSV 372
           L           +    P    LK+L + + RI      L ++ E +P++ +L+LS    
Sbjct: 56  LINVGL-----ISVSNLPKLPKLKKLELSENRI---FGGLDMLAEKLPNLTHLNLSG--- 104

Query: 373 SNNSRTLD--QGLCPLVHLQELHMADN---DLRGSLPWCLANMTSLRILD 417
            N  + +   + L  L  L+ L + +    +L          +  L  LD
Sbjct: 105 -NKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD 153

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 27/121 (22%), Positives = 46/121 (38%), Gaps = 6/121 (4%)

Query: 151 RLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKV 210
             S +  L L  +R          D   +LE L+     +           L +LN LK 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI------ANLPKLNKLKK 68

Query: 211 FDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNF 270
            +LS N  +  +     +  +L  L L  N+++    ++    L NL+ LD+   E+ N 
Sbjct: 69  LELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL 128

Query: 271 E 271
            
Sbjct: 129 N 129

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 52.4 bits (126), Expect = 5e-08
 Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 10/114 (8%)

Query: 75  RVVVLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKML 134
           + +VLD S+++ G+       L   F++LE L   +  +        +  L +L+ LK L
Sbjct: 20  KELVLDNSRSNEGK----LEGLTDEFEELEFLSTINVGL------TSIANLPKLNKLKKL 69

Query: 135 NLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRN 188
            L  N  +  +     +  +LT L+LS N++K    I+ L  L +L+ L++   
Sbjct: 70  ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 5/122 (4%)

Query: 352 LQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMT 411
           L++   +   ++ L L NS   +N   L+        L+ L   +  L  S+   L  + 
Sbjct: 9   LELRNRTPSDVKELVLDNSR--SNEGKLEGLTDEFEELEFLSTINVGLT-SIA-NLPKLN 64

Query: 412 SLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENN 471
            L+ L++S N+ +            ++  L LS N  +   ++EPL     LK  D  N 
Sbjct: 65  KLKKLELSDNR-VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

Query: 472 EI 473
           E+
Sbjct: 124 EV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 28/138 (20%), Positives = 54/138 (39%), Gaps = 7/138 (5%)

Query: 228 RLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHL 287
             S ++ L+L ++R          D    LE L      + +         L KL  L L
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN---LPKLNKLKKLEL 71

Query: 288 LRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIAL 347
               +  G ++L      P+L  L+LS N   +   +T +     ++LK L + +  +  
Sbjct: 72  SDNRVSGGLEVL--AEKCPNLTHLNLSGNKIKD--LSTIEPLKKLENLKSLDLFNCEVTN 127

Query: 348 NTSFLQIIGESMPSIQYL 365
              + + + + +P + YL
Sbjct: 128 LNDYRENVFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 9/117 (7%)

Query: 331 HFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQ 390
               +KEL +D++R   N   L+ + +    +++LS  N        ++   L  L  L+
Sbjct: 15  TPSDVKELVLDNSRS--NEGKLEGLTDEFEELEFLSTIN----VGLTSIA-NLPKLNKLK 67

Query: 391 ELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISS-SPLIHLTSIEDLILSDN 446
           +L ++DN + G L        +L  L++S N+ I  +S+  PL  L +++ L L + 
Sbjct: 68  KLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 26/107 (24%), Positives = 37/107 (34%), Gaps = 5/107 (4%)

Query: 616 LDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNF-NLTNLIWLQLEGNHFVG 674
           L L N++      E L      L  L+  N  L       N   L  L  L+L  N   G
Sbjct: 22  LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA---NLPKLNKLKKLELSDNRVSG 78

Query: 675 EIPQSLSKCSSLQGLFLSNNSLSG-KIPRWLGNLTVLRHIIMPKNHI 720
            +     KC +L  L LS N +        L  L  L+ + +    +
Sbjct: 79  GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 7/84 (8%)

Query: 907 LSGLDLSCNRL--IGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNK 964
           L  L      L  I ++P     L K++ L LS N ++G +        N+  L+LS NK
Sbjct: 44  LEFLSTINVGLTSIANLP----KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK 99

Query: 965 L-SWKIPYQLVELNTLAVFSVAYN 987
           +        L +L  L    +   
Sbjct: 100 IKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 18/99 (18%), Positives = 40/99 (40%), Gaps = 3/99 (3%)

Query: 893 KSITYTYQGRVPSLLSGLDLSCNRL-IGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSN 951
           + I    + R PS +  L L  +R   G +        +++ L+  +  L     +    
Sbjct: 5   RRIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT--SIANLPK 62

Query: 952 LRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLS 990
           L  ++ L+LS N++S  +     +   L   +++ N + 
Sbjct: 63  LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.6 bits (146), Expect = 2e-09
 Identities = 94/668 (14%), Positives = 193/668 (28%), Gaps = 220/668 (32%)

Query: 450  IPISLEPLFNHSRLK-IFDAENNEINAEIIESHSLTTPNFQLQS-----LLLSSGYRDGI 503
            + +  +   ++   K + D   + ++ E I+ H + + +    +      LLS       
Sbjct: 22   LSVFEDAFVDNFDCKDVQDMPKSILSKEEID-HIIMSKDAVSGTLRLFWTLLSKQEE--- 77

Query: 504  TFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLEN-NTKLRQLSLVNDSLVGPFRLPIHSHK 562
               KF+     + Y              +L+    T+ RQ S++    +   R  +++  
Sbjct: 78   MVQKFVEEVLRINY-------------KFLMSPIKTEQRQPSMMTRMYI-EQRDRLYNDN 123

Query: 563  QLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQ 622
            Q+     +K N            +SRL  +     AL                L+L   +
Sbjct: 124  QV----FAKYN------------VSRLQPYLKLRQAL----------------LELRPAK 151

Query: 623  ---LTGEIPEHLAM-GC--VSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGN----HF 672
               + G       + G     +      +  ++  M  + F      WL L  N      
Sbjct: 152  NVLIDG-------VLGSGKTWVALDVCLSYKVQCKMDFKIF------WLNL-KNCNSPET 197

Query: 673  VGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNL-TVLRHIIMPKNHIEGPIPL-EFCQ 730
            V E+ Q L     +   + S +  S  I   + ++   LR ++  K +    + L     
Sbjct: 198  VLEMLQKL--LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255

Query: 731  LRILQILDIS--------DNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKE--GTFFNC- 779
             +     ++S           ++  L +      I   H S  +   ++K     + +C 
Sbjct: 256  AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH-ISLDHHSMTLTPDEVKSLLLKYLDCR 314

Query: 780  -------------LTL--------------------------MILDLSYNHL-------- 792
                           L                           I++ S N L        
Sbjct: 315  PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374

Query: 793  ---------NGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGH 843
                     + +IP  +     LS  ++  + ++ +V + + +L++  L++         
Sbjct: 375  FDRLSVFPPSAHIPTIL-----LS--LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427

Query: 844  IPSCF--------DNTTLH----ERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFT 891
            IPS +        +   LH    + YN   +                D     L+ + ++
Sbjct: 428  IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD------------DLIPPYLDQYFYS 475

Query: 892  TKSITY----TYQGRVPSLLSG--LDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPI 945
               I +           +L     LD    R +           KI+  + + N  +G I
Sbjct: 476  --HIGHHLKNIEHPERMTLFRMVFLDF---RFLE---------QKIRHDSTAWNA-SGSI 520

Query: 946  PSTFSNLRN----IESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPE-RAAQF 1000
             +T   L+     I   D  Y +L          +N +  F                 + 
Sbjct: 521  LNTLQQLKFYKPYICDNDPKYERL----------VNAILDFLPKIEENLICSKYTDLLRI 570

Query: 1001 ATFNESSY 1008
            A   E   
Sbjct: 571  ALMAEDEA 578

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.9 bits (139), Expect = 2e-08
 Identities = 104/684 (15%), Positives = 193/684 (28%), Gaps = 192/684 (28%)

Query: 84  THRGEYWYLNASLFTPFQQ--LESLDLRD--------------NDIAGCVENEGLERLSR 127
              GE+ Y    + + F+   +++ D +D              + I      + +    R
Sbjct: 9   FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIM--SKDAVSGTLR 66

Query: 128 LSNL---KMLNLVGNLFNNS-------ILSSLARLSSLTSLDLSA-----NRLKGSIDI- 171
           L      K   +V              ++S +       S+         +RL     + 
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126

Query: 172 --------KELDSLRD-LEKLNIGRN-----M--IDKFVVSKGPKRLSRLNNLKVFDLSG 215
                   +    LR  L +L   +N     +    K  V+     L    + KV     
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA-----LDVCLSYKVQCK-- 179

Query: 216 NLFNNSIL-SSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQ 274
              +  I   +L   +S  ++L    +L   ID   + S S     D S N         
Sbjct: 180 --MDFKIFWLNLKNCNSPETVLEMLQKLLYQID-PNWTSRS-----DHSSNIKLRIH--S 229

Query: 275 ACSGLRKL----SYLHLLRVGIRD------------GSKLLQSMGSFPSLNTLDLSYNNF 318
             + LR+L     Y + L V + +              K+L        L T      +F
Sbjct: 230 IQAELRRLLKSKPYENCLLV-LLNVQNAKAWNAFNLSCKIL--------LTTRFKQVTDF 280

Query: 319 TETVTTTTQGFPHFKSLKELYMDDARIALNTS-----FLQIIGESMPSIQYLSLSNSSVS 373
               TT             + +D   + L         L+ +           L    ++
Sbjct: 281 LSAATT-----------THISLDHHSMTLTPDEVKSLLLKYLDCRPQ-----DLPREVLT 324

Query: 374 NNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSL-RILDVSSNQLIGSISSSPL 432
            N R L   +        L   DN       W   N   L  I++ S N L       P 
Sbjct: 325 TNPRRL--SIIAESIRDGLATWDN-------WKHVNCDKLTTIIESSLNVL------EPA 369

Query: 433 IHLTSIEDL-ILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQ 491
            +    + L +   +   IP  L        L +   +  + +  ++ +           
Sbjct: 370 EYRKMFDRLSVFPPS-AHIPTIL--------LSLIWFDVIKSDVMVVVNK------LHKY 414

Query: 492 SLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLV 551
           SL+     +      +   +   +                  LE   KL     ++ S+V
Sbjct: 415 SLVE----KQP---KESTISIPSI-----------------YLELKVKLENEYALHRSIV 450

Query: 552 GPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMN 611
             + +P    K     D+       +    IG  L      NI            F +  
Sbjct: 451 DHYNIP----KTFDSDDLIPPYLDQYFYSHIGHHLK-----NIEHPERMTLFRMVFLDFR 501

Query: 612 FLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNH 671
           FL+       ++  +     A G  S+ +        + ++   +     L+   L    
Sbjct: 502 FLE------QKIRHDSTAWNASG--SILNTLQQLKFYKPYICDNDPKYERLVNAIL---D 550

Query: 672 FVGEIPQSL--SKCSSLQGLFLSN 693
           F+ +I ++L  SK + L  + L  
Sbjct: 551 FLPKIEENLICSKYTDLLRIALMA 574

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.9 bits (139), Expect = 2e-08
 Identities = 76/467 (16%), Positives = 138/467 (29%), Gaps = 140/467 (29%)

Query: 1   MGGS-KSKMVVMFVL---LLIIFEGG--W-SEGCLNHERFALLQLKLFF--IDP------ 45
           + GS K+ + +   L   +    +    W +    N     L  L+     IDP      
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217

Query: 46  -----YNYLLDWVDDEGATDCCQWERVSCNNTMGRVVVLDLSQTHRGEYWYLNASLFTPF 100
                    +  +  E           +C      ++VL             NA  +  F
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENC------LLVLL-------NVQ--NAKAWNAF 262

Query: 101 QQLESLDL--------RDNDIA------------------GCVENEGLERLSRLSNLKML 134
                 +L        R   +                       +E    L +  + +  
Sbjct: 263 ------NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316

Query: 135 NL-----VGNLFNNSILSSLARLSSLTS---LDLSANRLKGSIDIKELDSLRDLEKLNIG 186
           +L       N    SI++   R    T      ++ ++L   I+     SL  LE     
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES----SLNVLEPAEY- 371

Query: 187 RNMIDKFVV----SKGP-KRLSRL-NNLKVFDLSGNLFNNSILSSLARLS---------- 230
           R M D+  V    +  P   LS +  ++   D+        +++ L + S          
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM------VVVNKLHKYSLVEKQPKEST 425

Query: 231 -SLRSLLLYDNRLEGSID-------VKEFDSLSNLEELDMSYNEIDNF------------ 270
            S+ S+ L + +++   +       V  ++     +  D+    +D +            
Sbjct: 426 ISIPSIYL-ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484

Query: 271 EVPQACSGLRKLSYLHL--LRVGIRDGSKLLQSMGSFPSLNTL-DLS-YNNF-TETVTTT 325
           E P+  +  R + +L    L   IR  S    + GS   LNTL  L  Y  +  +     
Sbjct: 485 EHPERMTLFRMV-FLDFRFLEQKIRHDSTAWNASGS--ILNTLQQLKFYKPYICDNDPKY 541

Query: 326 TQ---GFPHF------KSLKELYMDDARIALNTSFLQIIGESMPSIQ 363
            +       F        +   Y D  RIAL      I  E+   +Q
Sbjct: 542 ERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 57.1 bits (137), Expect = 1e-08
 Identities = 17/84 (20%), Positives = 39/84 (46%), Gaps = 2/84 (2%)

Query: 907 LSGLDLSCNRLIGHIPPQ-IGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKL 965
           L+ L +   + + H+  + +  L +++ L +  + L    P  F     +  L+LS+N L
Sbjct: 33  LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92

Query: 966 SWKIPYQLVELNTLAVFSVAYNNL 989
              + ++ V+  +L    ++ N L
Sbjct: 93  ES-LSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 56.7 bits (136), Expect = 2e-08
 Identities = 16/107 (14%), Positives = 34/107 (31%), Gaps = 3/107 (2%)

Query: 911  DLSC-NRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPS-TFSNLRNIESLDLSYNKLSWK 968
             L C           +     +  L + +      +       L  + +L +  + L + 
Sbjct: 12   GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV 71

Query: 969  IPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLC 1015
             P        L+  ++++N L   +  +  Q  +  E    GNP  C
Sbjct: 72   APDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.5 bits (133), Expect = 4e-08
 Identities = 22/98 (22%), Positives = 29/98 (29%), Gaps = 7/98 (7%)

Query: 602 SIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNL---EGHMFSRNFN 658
                      L  L + N Q    +      G   LR+L +  + L       F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH---F 78

Query: 659 LTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSL 696
              L  L L  N     +     +  SLQ L LS N L
Sbjct: 79  TPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 51.3 bits (122), Expect = 1e-06
 Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 4/99 (4%)

Query: 221 SILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLR 280
             L  L    +L  L + + +    +++++   L  L  L +  + +     P A     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA-PDAFHFTP 80

Query: 281 KLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFT 319
           +LS L+L    +     L        SL  L LS N   
Sbjct: 81  RLSRLNLSFNAL---ESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.7 bits (118), Expect = 3e-06
 Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 1/84 (1%)

Query: 782 LMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNL 840
           L  L +       ++  R   GL +L  L +  + L    P       +L  L+LS N L
Sbjct: 33  LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92

Query: 841 HGHIPSCFDNTTLHERYNNGSSLQ 864
                      +L E   +G+ L 
Sbjct: 93  ESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.4 bits (117), Expect = 4e-06
 Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 6/96 (6%)

Query: 381 QGLCPLVHLQELHMADNDLRGSLPW-CLANMTSLRILDVSSNQLIGSISSSPLIHLTSIE 439
             L    +L EL++ +      L    L  +  LR L +  +  +  ++         + 
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLS 83

Query: 440 DLILSDNHFQIPISLEP-LFNHSRLKIFDAENNEIN 474
            L LS N  +   SL         L+      N ++
Sbjct: 84  RLNLSFNALE---SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.8 bits (113), Expect = 1e-05
 Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 5/99 (5%)

Query: 144 SILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLS 203
             L  L    +LT L +   +    +++++L  L +L  L I ++ +        P    
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR----FVAPDAFH 77

Query: 204 RLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRL 242
               L   +LS N    S+     +  SL+ L+L  N L
Sbjct: 78  FTPRLSRLNLSFNAL-ESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.0 bits (111), Expect = 2e-05
 Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 1/95 (1%)

Query: 675 EIPQSLSKCSSLQGLFLSNNSLSGKIPRW-LGNLTVLRHIIMPKNHIEGPIPLEFCQLRI 733
           +    L    +L  L++ N      +    L  L  LR++ + K+ +    P  F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 734 LQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLH 768
           L  L++S N +          + ++++ LS N LH
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.9 bits (108), Expect = 5e-05
 Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 2/87 (2%)

Query: 562 KQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNN 621
           + L  L +       H+ L     L  L    I  + L    P +F     L  L+LS N
Sbjct: 31  ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90

Query: 622 QLTGEIPEHLAMGCVSLRSLALSNNNL 648
            L     + +    +SL+ L LS N L
Sbjct: 91  ALESLSWKTVQG--LSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.6 bits (102), Expect = 3e-04
 Identities = 20/128 (15%), Positives = 36/128 (28%), Gaps = 19/128 (14%)

Query: 275 ACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKS 334
              G   L                L  +    +L  L +      + +            
Sbjct: 6   CPHGSSGLRCTR------DGALDSLHHLPGAENLTELYIENQQHLQHLELRD--LRGLGE 57

Query: 335 LKELYMDDARIAL--NTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQEL 392
           L+ L +  + +      +F        P +  L+LS     N   +L       + LQEL
Sbjct: 58  LRNLTIVKSGLRFVAPDAF-----HFTPRLSRLNLSF----NALESLSWKTVQGLSLQEL 108

Query: 393 HMADNDLR 400
            ++ N L 
Sbjct: 109 VLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 4e-04
 Identities = 22/119 (18%), Positives = 31/119 (26%), Gaps = 26/119 (21%)

Query: 724 IPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLM 783
                     L  L I +      L                                 L 
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLEL-----------------------RDLRGLGELR 59

Query: 784 ILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH 841
            L +  + L   +         +LS L L+ N LE  +  +  +   LQ L LS N LH
Sbjct: 60  NLTIVKSGLR-FVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 32/135 (23%), Positives = 51/135 (37%), Gaps = 14/135 (10%)

Query: 585 ILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLT---GEIPEHLAMGCVSLRSL 641
           I +   +  +  N +    P  F ++  L+ L L +NQL      + + L      L  L
Sbjct: 38  IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL----TQLTVL 93

Query: 642 ALSNN---NLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSG 698
            L  N    L   +F R   L +L  L +  N    E+P+ + + + L  L L  N L  
Sbjct: 94  DLGTNQLTVLPSAVFDR---LVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKS 149

Query: 699 KIPRWLGNLTVLRHI 713
                   L+ L H 
Sbjct: 150 IPHGAFDRLSSLTHA 164

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 39/118 (33%), Positives = 54/118 (45%), Gaps = 5/118 (4%)

Query: 735 QILDISDNNISGSLPSCYD-FVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLN 793
           QIL + DN I+   P  +D  + +++++L  N L   L  G F +   L +LDL  N L 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 794 GNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN 850
             +P  V D L  L  L +  N L  E+P  + RL  L  L L  N L       FD 
Sbjct: 102 -VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDR 157

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 44.7 bits (106), Expect = 7e-05
 Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 9/138 (6%)

Query: 129 SNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRN 188
           +N ++L L  N            L +L  L L +N+L  ++ +   DSL  L  L++G N
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTN 98

Query: 189 MIDKFVVSKGPKRL-SRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSID 247
            +        P  +  RL +LK   +  N     +   + RL+ L  L L  N+L+ SI 
Sbjct: 99  QLTVL-----PSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLK-SIP 151

Query: 248 VKEFDSLSNLEELDMSYN 265
              FD LS+L    +  N
Sbjct: 152 HGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 41/181 (22%), Positives = 54/181 (29%), Gaps = 56/181 (30%)

Query: 784 ILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLC-RLNQLQLLDLSNNNLHG 842
           IL L  N +    P   D L  L  L L  N L   +P+ +   L QL +LDL  N L  
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQL-- 100

Query: 843 HIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGR 902
                             + L            +           FD             
Sbjct: 101 ------------------TVLPS---------AV-----------FDRLVH--------- 113

Query: 903 VPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSY 962
               L  L + CN+L   +P  I  LT +  L L  N L       F  L ++    L  
Sbjct: 114 ----LKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG 168

Query: 963 N 963
           N
Sbjct: 169 N 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 41.2 bits (97), Expect = 9e-04
 Identities = 41/149 (27%), Positives = 60/149 (40%), Gaps = 30/149 (20%)

Query: 179 DLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSL-----ARLSSLR 233
           + + L +  N I K      P     L NLK   L  N      L +L       L+ L 
Sbjct: 41  NAQILYLHDNQITKL----EPGVFDSLINLKELYLGSNQ-----LGALPVGVFDSLTQLT 91

Query: 234 SLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIR 293
            L L  N+L   +    FD L +L+EL M  N++   E+P+    L  L++L L      
Sbjct: 92  VLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT--ELPRGIERLTHLTHLAL------ 142

Query: 294 DGSKLLQSM--GSF---PSLNTLDLSYNN 317
                L+S+  G+F    SL    L + N
Sbjct: 143 -DQNQLKSIPHGAFDRLSSLTHAYL-FGN 169

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 9/97 (9%)

Query: 602 SIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLE---GHMFSRNFN 658
            +P    N   L  +DLSNN+++  +          L +L LS N L       F     
Sbjct: 45  LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDG--- 100

Query: 659 LTNLIWLQLEGNHFVGEIPQ-SLSKCSSLQGLFLSNN 694
           L +L  L L GN  +  +P+ + +  S+L  L +  N
Sbjct: 101 LKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 44.2 bits (105), Expect = 6e-05
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 6/92 (6%)

Query: 761 HLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEGE 819
           +L  N     L      N   L ++DLS N ++  + ++    ++QL  LIL++N L   
Sbjct: 37  YLDGNQF--TLVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRCI 93

Query: 820 VPIQLCRLNQLQLLDLSNNNLHGHIP-SCFDN 850
            P     L  L+LL L  N++   +P   F++
Sbjct: 94  PPRTFDGLKSLRLLSLHGNDISV-VPEGAFND 124

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 910 LDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 966
           L L  N+    +P ++ N   +  ++LS+N ++     +FSN+  + +L LSYN+L 
Sbjct: 36  LYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.1 bits (97), Expect = 6e-04
 Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 34/133 (25%)

Query: 156 TSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSG 215
           T L L  N+   ++  KEL + + L  +++  N            R+S L+N + F    
Sbjct: 34  TELYLDGNQF--TLVPKELSNYKHLTLIDLSNN------------RISTLSN-QSFS--- 75

Query: 216 NLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQ- 274
                        ++ L +L+L  NRL   I  + FD L +L  L +  N+I    VP+ 
Sbjct: 76  ------------NMTQLLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDIS--VVPEG 120

Query: 275 ACSGLRKLSYLHL 287
           A + L  LS+L +
Sbjct: 121 AFNDLSALSHLAI 133

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 43/187 (22%), Positives = 72/187 (38%), Gaps = 36/187 (19%)

Query: 132 KMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMID 191
           + L+L          ++   L+ LT L+L  N+L+ ++     D L +L  L +  N + 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA 96

Query: 192 KFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEF 251
                  P          VFD                L+ L  L L  N+L+ S+    F
Sbjct: 97  SL-----PLG--------VFD---------------HLTQLDKLYLGGNQLK-SLPSGVF 127

Query: 252 DSLSNLEELDMSYNEIDNFEVPQ-ACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNT 310
           D L+ L+EL ++ N++    +P  A   L  L  L L    ++  S    +      L T
Sbjct: 128 DRLTKLKELRLNTNQLQ--SIPAGAFDKLTNLQTLSLSTNQLQ--SVPHGAFDRLGKLQT 183

Query: 311 LDLSYNN 317
           + L + N
Sbjct: 184 ITL-FGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 38/137 (27%), Positives = 54/137 (39%), Gaps = 8/137 (5%)

Query: 718 NHIEGPIPLEFCQLRILQILDISDNNISGSLPS--CYDFVCIEQVHLSKNMLHGQLKEGT 775
             +       F  L  L  L++  N +  +L +    D   +  + L+ N L   L  G 
Sbjct: 45  TGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA-SLPLGV 102

Query: 776 FFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLC-RLNQLQLL 833
           F +   L  L L  N L   +P  V D L++L  L L  N L+  +P     +L  LQ L
Sbjct: 103 FDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTL 160

Query: 834 DLSNNNLHGHIPSCFDN 850
            LS N L       FD 
Sbjct: 161 SLSTNQLQSVPHGAFDR 177

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 45.1 bits (107), Expect = 5e-05
 Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 23/157 (14%)

Query: 597 NALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNN---NLEGHMF 653
             L     ++F  +  L +L+L  NQL   +   +      L +L L+NN   +L   +F
Sbjct: 45  TGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLASLPLGVF 103

Query: 654 SRNFNLTNLIWLQLEGNHFVGEIPQSLS-----KCSSLQGLFLSNNSLSGKIPRWLG--- 705
                LT L  L L GN       +SL      + + L+ L L+ N L   IP   G   
Sbjct: 104 DH---LTQLDKLYLGGNQL-----KSLPSGVFDRLTKLKELRLNTNQLQ-SIPA--GAFD 152

Query: 706 NLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDN 742
            LT L+ + +  N ++      F +L  LQ + +  N
Sbjct: 153 KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 44.3 bits (105), Expect = 8e-05
 Identities = 48/201 (23%), Positives = 64/201 (31%), Gaps = 50/201 (24%)

Query: 639 RSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSG 698
             L L +  L     +    LT L WL L+ N               LQ       +LS 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYN--------------QLQ-------TLSA 76

Query: 699 KIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIE 758
            +   L  L  L    +  N +       F  L  L  L +  N +  SLP         
Sbjct: 77  GVFDDLTELGTLG---LANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLP--------- 123

Query: 759 QVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLE 817
                          G F     L  L L+ N L  +IP    D L+ L  L L+ N L+
Sbjct: 124 --------------SGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ 168

Query: 818 GEVPIQLCRLNQLQLLDLSNN 838
                   RL +LQ + L  N
Sbjct: 169 SVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 44.3 bits (105), Expect = 8e-05
 Identities = 39/161 (24%), Positives = 63/161 (39%), Gaps = 33/161 (20%)

Query: 92  LNASLFTPFQQLESLDLRDNDIAGCVENEGLER--LSRLSNLKMLNLVGNLFNNSILSSL 149
           L+ + F    +L  L+L  N +        L       L+ L  L L  N      L+SL
Sbjct: 50  LSDATFRGLTKLTWLNLDYNQLQT------LSAGVFDDLTELGTLGLANNQ-----LASL 98

Query: 150 -----ARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLS- 203
                  L+ L  L L  N+LK S+     D L  L++L +  N +         + +  
Sbjct: 99  PLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQL---------QSIPA 148

Query: 204 ----RLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDN 240
               +L NL+   LS N   +    +  RL  L+++ L+ N
Sbjct: 149 GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 50/184 (27%), Positives = 69/184 (37%), Gaps = 39/184 (21%)

Query: 785 LDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHI 844
           LDL    L         GL++L++L L +N L+         L +L  L L+NN L    
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99

Query: 845 PSCFDNTT----LHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQ 900
              FD+ T    L+   N   SL           G+           FD  TK       
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKSLPS---------GV-----------FDRLTK------- 132

Query: 901 GRVPSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLD 959
                 L  L L+ N+L   IP      LT +QTL+LS N L       F  L  ++++ 
Sbjct: 133 ------LKELRLNTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTIT 185

Query: 960 LSYN 963
           L  N
Sbjct: 186 LFGN 189

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 51.1 bits (121), Expect = 1e-06
 Identities = 34/237 (14%), Positives = 70/237 (29%), Gaps = 40/237 (16%)

Query: 122 LERLSRLSNLKMLNLVGNLFNNSILSSL------ARLSSLTSLDLSANRLKGSIDIKELD 175
           +E   + ++ + L      F    +S +        L ++  L+    +   ++ I +  
Sbjct: 132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKP 191

Query: 176 SLRDLEKLNIGRNMI-DKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLA------R 228
               L+ L I    + D  V       L  L  L ++    +   +  ++         R
Sbjct: 192 RPN-LKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDR 250

Query: 229 LSSLRSLLLYDNRL--EGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLH 286
             +L+ L + D            E D L  LE +D+S   +                   
Sbjct: 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL------------------- 291

Query: 287 LLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFT-ETVTTTTQGFPHFKSLKELYMDD 342
                      LL  +     L  +++ YN  + E      +  P    + +    D
Sbjct: 292 ----TDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVSDSQEYD 344

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.9 bits (110), Expect = 2e-05
 Identities = 27/180 (15%), Positives = 62/180 (34%), Gaps = 15/180 (8%)

Query: 255 SNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLS 314
               ++D    EI   E       L   +   L  + I+  + L       P+L +L++ 
Sbjct: 144 LFWGDIDFEEQEISWIEQVDLSPVLD--AMPLLNNLKIKGTNNLSIGKKPRPNLKSLEII 201

Query: 315 YNNFTETVTT--TTQGFPHFKSLK-----ELYMDDARIALNTSFLQIIGESMPSIQYLSL 367
                ++V         P+ + L      E Y  D  + +         +  P++++L +
Sbjct: 202 SGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS--KDRFPNLKWLGI 259

Query: 368 SNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGS----LPWCLANMTSLRILDVSSNQL 423
            ++   N    +      L  L+ + ++   L       L   +  +  L+ +++  N L
Sbjct: 260 VDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.1 bits (108), Expect = 4e-05
 Identities = 20/178 (11%), Positives = 51/178 (28%), Gaps = 35/178 (19%)

Query: 532 WLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGD----ILS 587
            +L+    L  L +   +      +       L+ L++        +  +I       L 
Sbjct: 166 PVLDAMPLLNNLKIKGTN---NLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLE 222

Query: 588 RLTVFNISMNALDGSIPSSF------GNMNFLQFLDLSNNQLTGEIPEHLAMGCV--SLR 639
           +L ++    +       + F           L++L + + +    + E      +   L 
Sbjct: 223 KLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLE 282

Query: 640 SLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLS 697
           ++ +S   L                     +     +   + K   L+ + +  N LS
Sbjct: 283 TMDISAGVL--------------------TDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 40/167 (23%), Positives = 69/167 (41%), Gaps = 26/167 (15%)

Query: 104 ESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSAN 163
              +L+   +            + L+++  +    +      +  +  L ++  L L  N
Sbjct: 22  IKANLKKKSVTD------AVTQNELNSIDQIIANNSDI--KSVQGIQYLPNVRYLALGGN 73

Query: 164 RLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSIL 223
           +L    DI  L  L +L  L +  N +   + +    +L+ L  L        L  N  L
Sbjct: 74  KLH---DISALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKEL-------VLVENQ-L 121

Query: 224 SSL-----ARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYN 265
            SL      +L++L  L L  N+L+ S+    FD L+NL ELD+SYN
Sbjct: 122 QSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYN 167

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 44.6 bits (106), Expect = 8e-05
 Identities = 52/242 (21%), Positives = 93/242 (38%), Gaps = 69/242 (28%)

Query: 616 LDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFN-LTNLIWLQLEGNHFVG 674
            +L    +T  + ++      S+  +  +N++++     +    L N+ +L L GN    
Sbjct: 24  ANLKKKSVTDAVTQN---ELNSIDQIIANNSDIK---SVQGIQYLPNVRYLALGGNKL-- 75

Query: 675 EIPQSLS---KCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQL 731
                +S   + ++L  L L+ N L   +P                          F +L
Sbjct: 76  ---HDISALKELTNLTYLILTGNQLQ-SLP-----------------------NGVFDKL 108

Query: 732 RILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNH 791
             L+ L + +N +  SLP                        G F     L  L+L++N 
Sbjct: 109 TNLKELVLVENQLQ-SLPD-----------------------GVFDKLTNLTYLNLAHNQ 144

Query: 792 LNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLC-RLNQLQLLDLSNNNLHGHIPS-CF 848
           L  ++P  V D L+ L+ L L++N L+  +P  +  +L QL+ L L  N L   +P   F
Sbjct: 145 LQ-SLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKS-VPDGVF 201

Query: 849 DN 850
           D 
Sbjct: 202 DR 203

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 44.6 bits (106), Expect = 8e-05
 Identities = 49/238 (20%), Positives = 96/238 (40%), Gaps = 54/238 (22%)

Query: 216 NLFNNSI--LSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVP 273
           NL   S+    +   L+S+  ++  ++ ++    V+    L N+  L +  N+       
Sbjct: 25  NLKKKSVTDAVTQNELNSIDQIIANNSDIKS---VQGIQYLPNVRYLALGGNK------- 74

Query: 274 QACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLN---TLDLSYNNFTETVTTTTQGFP 330
                                    L  + +   L     L L+ N    ++      F 
Sbjct: 75  -------------------------LHDISALKELTNLTYLILTGNQLQ-SLPNGV--FD 106

Query: 331 HFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLC-PLVHL 389
              +LKEL + + ++    S    + + + ++ YL+L++    N  ++L +G+   L +L
Sbjct: 107 KLTNLKELVLVENQL---QSLPDGVFDKLTNLTYLNLAH----NQLQSLPKGVFDKLTNL 159

Query: 390 QELHMADNDLRGSLPW-CLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDN 446
            EL ++ N L+ SLP      +T L+ L +  NQL  S+       LTS++ + L DN
Sbjct: 160 TELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQL-KSVPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 45/175 (25%), Positives = 69/175 (39%), Gaps = 11/175 (6%)

Query: 681 SKCS-SLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDI 739
                      L   S++  + +    L  +  II   + I+         L  ++ L +
Sbjct: 15  DDAFAETIKANLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVRYLAL 70

Query: 740 SDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDR 799
             N +   + +  +   +  + L+ N L   L  G F     L  L L  N L  ++PD 
Sbjct: 71  GGNKLH-DISALKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKELVLVENQLQ-SLPDG 127

Query: 800 V-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPS-CFDNTT 852
           V D L+ L+YL LAHN L+        +L  L  LDLS N L   +P   FD  T
Sbjct: 128 VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLT 181

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 39/138 (28%), Positives = 56/138 (40%), Gaps = 19/138 (13%)

Query: 585 ILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALS 644
           I ++ T  ++  N+L       F  +  L  L L  N+L   +P  +     SL  L LS
Sbjct: 26  IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLS 84

Query: 645 NN---NLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLS-----KCSSLQGLFLSNNSL 696
            N   +L   +F +   LT L  L L  N       QSL      K + L+ L L  N L
Sbjct: 85  TNQLQSLPNGVFDK---LTQLKELALNTNQL-----QSLPDGVFDKLTQLKDLRLYQNQL 136

Query: 697 SGKIPR-WLGNLTVLRHI 713
              +P      LT L++I
Sbjct: 137 KS-VPDGVFDRLTSLQYI 153

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 44.3 bits (105), Expect = 8e-05
 Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 18/140 (12%)

Query: 132 KMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMID 191
             L+L  N   +        L+SLT L L  N+L+ S+     + L  L  LN+  N + 
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ 89

Query: 192 KFVVSKGPKRL-SRLNNLKVFDLSGNLFNNSILSSL-----ARLSSLRSLLLYDNRLEGS 245
                  P  +  +L  LK   L+ N      L SL      +L+ L+ L LY N+L+ S
Sbjct: 90  SL-----PNGVFDKLTQLKELALNTNQ-----LQSLPDGVFDKLTQLKDLRLYQNQLK-S 138

Query: 246 IDVKEFDSLSNLEELDMSYN 265
           +    FD L++L+ + +  N
Sbjct: 139 VPDGVFDRLTSLQYIWLHDN 158

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 4/92 (4%)

Query: 761 HLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEGE 819
            L+ N L     +G F     L+ L+L  N L   I     +G S +  L L  N ++ E
Sbjct: 35  LLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIK-E 92

Query: 820 VPIQLC-RLNQLQLLDLSNNNLHGHIPSCFDN 850
           +  ++   L+QL+ L+L +N +   +P  F++
Sbjct: 93  ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH 124

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 29/150 (19%), Positives = 53/150 (35%), Gaps = 30/150 (20%)

Query: 614 QFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNN---NLEGHMFSRNFNLTNLIWLQLEGN 670
             L L++N+L     + L      L  L L  N    +E + F      +++  LQL  N
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG---ASHIQELQLGEN 88

Query: 671 HFVGEIPQSLS-----KCSSLQGLFLSNNSLSGKIPRWLG---NLTVLRHIIMPKNHIEG 722
                  + +S         L+ L L +N +S  +    G   +L  L  + +  N    
Sbjct: 89  KI-----KEISNKMFLGLHQLKTLNLYDNQISC-VMP--GSFEHLNSLTSLNLASN---- 136

Query: 723 PIPLEFCQLRILQILD-ISDNNISGSLPSC 751
             P   C   +    + +   +++G    C
Sbjct: 137 --PFN-CNCHLAWFAEWLRKKSLNGGAARC 163

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 30/134 (22%), Positives = 49/134 (36%), Gaps = 32/134 (23%)

Query: 156 TSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSG 215
           T L L+ N L           L  L KL + RN            +L+ +     F+   
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRN------------QLTGIEP-NAFE--- 75

Query: 216 NLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQ- 274
                         S ++ L L +N+++  I  K F  L  L+ L++  N+I    V   
Sbjct: 76  ------------GASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISC--VMPG 120

Query: 275 ACSGLRKLSYLHLL 288
           +   L  L+ L+L 
Sbjct: 121 SFEHLNSLTSLNLA 134

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.8 bits (104), Expect = 9e-05
 Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 9/92 (9%)

Query: 607 FGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLE---GHMFSRNFNLTNLI 663
           FG +  L  L+L  NQLT  I  +   G   ++ L L  N ++     MF     L  L 
Sbjct: 50  FGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIKEISNKMFLG---LHQLK 105

Query: 664 WLQLEGNHFVGEIPQ-SLSKCSSLQGLFLSNN 694
            L L  N  +  +   S    +SL  L L++N
Sbjct: 106 TLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASN 136

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	1102
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.98
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.98
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.89
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.84
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.83
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.83
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.82
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.81
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.8
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.79
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.79
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.79
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.79
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.77
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.76
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.76
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.76
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.75
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.75
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.73
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.73
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.72
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.71
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.7
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.7
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.7
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.68
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.67
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.65
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.65
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.64
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.64
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.63
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.61
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.6
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.6
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.58
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.57
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.57
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.57
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.55
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.55
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.51
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.47
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.45
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.44
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.42
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.41
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.4
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.36
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.35
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.33
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.29
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.22
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.2
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.19
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.17
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.04
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.98
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.53
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.51
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.51
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.46
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.31
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.18
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.9
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.8
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.48
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.06
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.84
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.71

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.8e-88  Score=844.98  Aligned_cols=730  Identities=30%  Similarity=0.436  Sum_probs=491.8

Q ss_pred             cccccHHHHHHHHhhhhhccCCCCCCCCCCCCCCCCCCcCcCceEecCCCCcEEEEEcCCCCCCcccccccccCCCCCCC
Q 001313           24 SEGCLNHERFALLQLKLFFIDPYNYLLDWVDDEGATDCCQWERVSCNNTMGRVVVLDLSQTHRGEYWYLNASLFTPFQQL  103 (1102)
Q Consensus        24 ~~~c~~~~~~all~~k~~~~~~~~~l~~w~~~~~~~~cc~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~~~L  103 (1102)
                      ++.+.++||+|||+||+++.||. .+++|+. +  +|||+|+||+|+  +|||++|||++....|....-++.|.++++|
T Consensus         6 ~~~~~~~~~~all~~k~~~~~~~-~l~~W~~-~--~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L   79 (768)
T 3rgz_A            6 PSQSLYREIHQLISFKDVLPDKN-LLPDWSS-N--KNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGL   79 (768)
T ss_dssp             --CCHHHHHHHHHHHHTTCSCTT-SSTTCCT-T--SCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTC
T ss_pred             cccCCHHHHHHHHHHHhhCCCcc-cccCCCC-C--CCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcc
Confidence            45558899999999999999998 9999974 3  799999999998  7999999999987766532223556778888


Q ss_pred             CEEeCCCCCCCCcccchhhhhhcCCCCCcEEeCCCCcCCcchhH--hhhcCCCcCEEEcCCCcccCCCChhhhccCCCCc
Q 001313          104 ESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILS--SLARLSSLTSLDLSANRLKGSIDIKELDSLRDLE  181 (1102)
Q Consensus       104 ~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~  181 (1102)
                      +.++++.+.+...+     ..++++++||+|+|++|.+.+.+|.  .++++++|++||+++|.+.+.++...+.++++|+
T Consensus        80 ~~l~~~~~~~~~l~-----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~  154 (768)
T 3rgz_A           80 ESLFLSNSHINGSV-----SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE  154 (768)
T ss_dssp             CEEECTTSCEEECC-----CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCS
T ss_pred             cccCCcCCCcCCCc-----hhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCC
Confidence            88888877654322     2467788888888888888777777  7888888888888888777655443335666666


Q ss_pred             EEEcCCCcCCcccccCCccc---cCCCCCcCEEEcCCCcCChhhhHhhhccCCCcEEEccCCcCCCCCchhhccCCCCCc
Q 001313          182 KLNIGRNMIDKFVVSKGPKR---LSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLE  258 (1102)
Q Consensus       182 ~L~Ls~n~~~~~~~~~~~~~---l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~  258 (1102)
                      +|++++|.+++..+    ..   +.++++|++|++++|.+++..+.  ..+++|++|++++|.+.+.++.  ++++++|+
T Consensus       155 ~L~Ls~n~l~~~~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~  226 (768)
T 3rgz_A          155 VLDLSANSISGANV----VGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF--LGDCSALQ  226 (768)
T ss_dssp             EEECCSSCCEEETH----HHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB--CTTCCSCC
T ss_pred             EEECCCCccCCcCC----hhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc--cccCCCCC
Confidence            66666666655433    22   45566666666666655543332  5555566666665555544442  55555555


Q ss_pred             EEecccCccCCcchhhhhccccccceeccccccccCchhhhhhcCCCCCCCEEeCCCCCcccccccccccccccccccee
Q 001313          259 ELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKEL  338 (1102)
Q Consensus       259 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L  338 (1102)
                      +|++++|.+++.                           .+..++.                                  
T Consensus       227 ~L~Ls~n~l~~~---------------------------~~~~l~~----------------------------------  245 (768)
T 3rgz_A          227 HLDISGNKLSGD---------------------------FSRAIST----------------------------------  245 (768)
T ss_dssp             EEECCSSCCCSC---------------------------HHHHTTT----------------------------------
T ss_pred             EEECcCCcCCCc---------------------------ccHHHhc----------------------------------
Confidence            555555554421                           1222333                                  


Q ss_pred             ecccchhhhchhhHHHhhccCCCCcEEecccCcCcCCcccccCCccCCCCccEEEcCCCcCCCCcchhccCC-CCCcEEE
Q 001313          339 YMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANM-TSLRILD  417 (1102)
Q Consensus       339 ~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~  417 (1102)
                                          +++|++|++++|.+.+..|.   .  .+++|++|++++|.+++.+|..+... ++|++|+
T Consensus       246 --------------------l~~L~~L~Ls~n~l~~~~~~---~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~  300 (768)
T 3rgz_A          246 --------------------CTELKLLNISSNQFVGPIPP---L--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD  300 (768)
T ss_dssp             --------------------CSSCCEEECCSSCCEESCCC---C--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEE
T ss_pred             --------------------CCCCCEEECCCCcccCccCc---c--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEE
Confidence                                34444444444444433332   1  34455555555555554444444443 5555555


Q ss_pred             cCCCccccccCCcccccCCccCeeecCCcccccccCccccccCCcceEEecCCCccchhhhccccCCCCcccceeeeecc
Q 001313          418 VSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSS  497 (1102)
Q Consensus       418 Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~l~~l~l~~  497 (1102)
                      +++|.+.+.+ +..+.++++|++|++++|.+.+.++...                                         
T Consensus       301 Ls~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~ip~~~-----------------------------------------  338 (768)
T 3rgz_A          301 LSGNHFYGAV-PPFFGSCSLLESLALSSNNFSGELPMDT-----------------------------------------  338 (768)
T ss_dssp             CCSSEEEECC-CGGGGGCTTCCEEECCSSEEEEECCHHH-----------------------------------------
T ss_pred             CcCCcCCCcc-chHHhcCCCccEEECCCCcccCcCCHHH-----------------------------------------
Confidence            5555554433 3444444444444444444433322221                                         


Q ss_pred             CCCCCCccCccccCCCcccEEEeccccCCCCCChhhhhcCCCCcEEEccCCCCcCCCcCCCCCCC-CcCEEEccCCcCCC
Q 001313          498 GYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHK-QLRLLDVSKNNFQG  576 (1102)
Q Consensus       498 ~~~~~~~~p~~l~~~~~L~~L~ls~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~-~L~~L~ls~n~l~~  576 (1102)
                                                          +..+++|++|++++|.+.+..+..+..++ +|++|++++|.+++
T Consensus       339 ------------------------------------l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~  382 (768)
T 3rgz_A          339 ------------------------------------LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG  382 (768)
T ss_dssp             ------------------------------------HTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEE
T ss_pred             ------------------------------------HhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCC
Confidence                                                22223333333333333322222233333 56777777777777


Q ss_pred             CCCchhhhc-CCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCccccc
Q 001313          577 HIPLEIGDI-LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSR  655 (1102)
Q Consensus       577 ~ip~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~  655 (1102)
                      .+|..++.. +++|++|++++|++++.+|..|.++++|++|++++|++++.+|..+ ..+++|++|++++|.+++.+|..
T Consensus       383 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~  461 (768)
T 3rgz_A          383 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL-GSLSKLRDLKLWLNMLEGEIPQE  461 (768)
T ss_dssp             ECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCCSCCCGG
T ss_pred             CcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHH-hcCCCCCEEECCCCcccCcCCHH
Confidence            666665432 4667777777777777777777777777777777777776666655 46777777777777777777777


Q ss_pred             ccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCccc
Q 001313          656 NFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQ  735 (1102)
Q Consensus       656 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  735 (1102)
                      +..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|.+++.+++|++|++++|++++.+|..+..+++|+
T Consensus       462 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  541 (768)
T 3rgz_A          462 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI  541 (768)
T ss_dssp             GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCC
T ss_pred             HcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCC
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             EEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccE---------EEccCccCcccCCccccCCCCC
Q 001313          736 ILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMI---------LDLSYNHLNGNIPDRVDGLSQL  806 (1102)
Q Consensus       736 ~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~---------L~Ls~n~l~~~~p~~~~~l~~L  806 (1102)
                      .|++++|+++|.+|..+                        ..+..+..         ..+.++...        .....
T Consensus       542 ~L~Ls~N~l~g~ip~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~  589 (768)
T 3rgz_A          542 WLDLNTNLFNGTIPAAM------------------------FKQSGKIAANFIAGKRYVYIKNDGMK--------KECHG  589 (768)
T ss_dssp             EEECCSSEEESBCCGGG------------------------GTTTTCBCCSTTCSCEEEEEECCSCC--------TTCCS
T ss_pred             EEECCCCccCCcCChHH------------------------hcccchhhhhcccccccccccccccc--------ccccc
Confidence            77777777666555432                        22222222         222222111        00011


Q ss_pred             CEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccc
Q 001313          807 SYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILE  886 (1102)
Q Consensus       807 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  886 (1102)
                      ....   -.+.+..+..+..++.++.++++.|.++|.+|..+++++                                  
T Consensus       590 ~~~~---~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~----------------------------------  632 (768)
T 3rgz_A          590 AGNL---LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG----------------------------------  632 (768)
T ss_dssp             SEEE---EECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSB----------------------------------
T ss_pred             cccc---cccccccchhhhccccccccccccceecccCchhhhccc----------------------------------
Confidence            1111   134567777888888888899999999999988876654                                  


Q ss_pred             eeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCc
Q 001313          887 SFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS  966 (1102)
Q Consensus       887 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  966 (1102)
                                         .|+.|||++|+++|.+|.+|+++++|+.|||++|+++|.+|..|+++++|++||||+|+++
T Consensus       633 -------------------~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~  693 (768)
T 3rgz_A          633 -------------------SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD  693 (768)
T ss_dssp             -------------------CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred             -------------------cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCccc
Confidence                               6899999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCchhhhcCCCCCEEEcccCcCcccCCccccccCCCCccccCCCCCCCCCCCCCCCCCCC
Q 001313          967 WKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICISPTT 1027 (1102)
Q Consensus       967 ~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~gN~~lC~~~~~~~c~~~~ 1027 (1102)
                      |.+|..+.++++|++||+++|+++|.||. .++|.+|...+|.|||++||.|+. .|.+..
T Consensus       694 g~ip~~l~~l~~L~~L~ls~N~l~g~iP~-~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~  752 (768)
T 3rgz_A          694 GRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFETFPPAKFLNNPGLCGYPLP-RCDPSN  752 (768)
T ss_dssp             ECCCGGGGGCCCCSEEECCSSEEEEECCS-SSSGGGSCGGGGCSCTEEESTTSC-CCCSCC
T ss_pred             CcCChHHhCCCCCCEEECcCCcccccCCC-chhhccCCHHHhcCCchhcCCCCc-CCCCCc
Confidence            99999999999999999999999999999 789999999999999999999987 665443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.1e-68  Score=666.68  Aligned_cols=656  Identities=28%  Similarity=0.399  Sum_probs=396.8

Q ss_pred             CCcEEeCCCCcCCcc---hhHhhhcCCCcCEEEcCCCcccCCCChhhhccCCCCcEEEcCCCcCCcccccCCccccCCCC
Q 001313          130 NLKMLNLVGNLFNNS---ILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLN  206 (1102)
Q Consensus       130 ~L~~L~Ls~n~~~~~---~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~  206 (1102)
                      +++.|+|+++.+.+.   +|+++.++++|+.++++.+.+...                              +..+++++
T Consensus        51 ~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l------------------------------~~~~~~l~  100 (768)
T 3rgz_A           51 KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGS------------------------------VSGFKCSA  100 (768)
T ss_dssp             EEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEEC------------------------------CCCCCCCT
T ss_pred             cEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCC------------------------------chhhccCC
Confidence            566677777777766   777788888888887777755321                              13566677


Q ss_pred             CcCEEEcCCCcCChhhhH--hhhccCCCcEEEccCCcCCCCCchhhccCCCCCcEEecccCccCCcchhhhhccccccce
Q 001313          207 NLKVFDLSGNLFNNSILS--SLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSY  284 (1102)
Q Consensus       207 ~L~~L~Ls~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~  284 (1102)
                      +|++|+|++|.+++.+|.  .++++++|++|++++|.+.+.++...+.++++|++|++++|.+++..+..          
T Consensus       101 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----------  170 (768)
T 3rgz_A          101 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVG----------  170 (768)
T ss_dssp             TCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHH----------
T ss_pred             CCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChh----------
Confidence            777777777777766666  77777777777777777776666544467777777777777765322110          


Q ss_pred             eccccccccCchhhhhhcCCCCCCCEEeCCCCCccccccccccccccccccceeecccchhhhchhhHHHhhccCCCCcE
Q 001313          285 LHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQY  364 (1102)
Q Consensus       285 L~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~  364 (1102)
                                    ...+..+++|++|++++|.+......                               . .+++|++
T Consensus       171 --------------~~~~~~l~~L~~L~Ls~n~l~~~~~~-------------------------------~-~l~~L~~  204 (768)
T 3rgz_A          171 --------------WVLSDGCGELKHLAISGNKISGDVDV-------------------------------S-RCVNLEF  204 (768)
T ss_dssp             --------------HHHTTCCTTCCEEECCSSEEESCCBC-------------------------------T-TCTTCCE
T ss_pred             --------------hhhhccCCCCCEEECCCCcccccCCc-------------------------------c-cCCcCCE
Confidence                          01134444555555555443211000                               0 1445555


Q ss_pred             EecccCcCcCCcccccCCccCCCCccEEEcCCCcCCCCcchhccCCCCCcEEEcCCCccccccCCcccccCCccCeeecC
Q 001313          365 LSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILS  444 (1102)
Q Consensus       365 L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~  444 (1102)
                      |++++|.+.+..|.    ++.+++|++|++++|.+++.+|..+..+++|++|++++|.+.+.++..   .+         
T Consensus       205 L~Ls~n~l~~~~~~----l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l---------  268 (768)
T 3rgz_A          205 LDVSSNNFSTGIPF----LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PL---------  268 (768)
T ss_dssp             EECCSSCCCSCCCB----CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CC---------
T ss_pred             EECcCCcCCCCCcc----cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---cc---------
Confidence            55555554443332    344445555555555554444444444444444444444443322110   22         


Q ss_pred             CcccccccCccccccCCcceEEecCCCccchhhhccccCCCCcccceeeeeccCCCCCCccCccccCCCcccEEEecccc
Q 001313          445 DNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIK  524 (1102)
Q Consensus       445 ~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~p~~l~~~~~L~~L~ls~~~  524 (1102)
                                                                                                      
T Consensus       269 --------------------------------------------------------------------------------  268 (768)
T 3rgz_A          269 --------------------------------------------------------------------------------  268 (768)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCChhhhhcCCCCcEEEccCCCCcCCCcCCCCCCCCcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCC
Q 001313          525 MNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIP  604 (1102)
Q Consensus       525 ~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~  604 (1102)
                                                           ++|++|++++|.++|.+|..++..+++|++|++++|++++.+|
T Consensus       269 -------------------------------------~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p  311 (768)
T 3rgz_A          269 -------------------------------------KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP  311 (768)
T ss_dssp             -------------------------------------TTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCC
T ss_pred             -------------------------------------CCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccc
Confidence                                                 2233333333333334444443323444555555555444445


Q ss_pred             cccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCC-ccCeeeccCccCcccCCCCcCC-
Q 001313          605 SSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLT-NLIWLQLEGNHFVGEIPQSLSK-  682 (1102)
Q Consensus       605 ~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~-  682 (1102)
                      ..|+++++|++|++++|+++|.+|...+..+++|++|++++|++++..|..+.+++ +|++|++++|.+++.+|..+.. 
T Consensus       312 ~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~  391 (768)
T 3rgz_A          312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN  391 (768)
T ss_dssp             GGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCS
T ss_pred             hHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhc
Confidence            55555555555555555554445544334455555555555555544444444444 5555555555555555544444 


Q ss_pred             -CCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCC-CCccccEE
Q 001313          683 -CSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCY-DFVCIEQV  760 (1102)
Q Consensus       683 -l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~-~~~~L~~L  760 (1102)
                       +++|++|++++|++++.+|..++++++|+.|++++|++++.+|..+..+++|+.|++++|++++.+|..+ .+++|++|
T Consensus       392 ~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  471 (768)
T 3rgz_A          392 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL  471 (768)
T ss_dssp             TTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred             ccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEE
Confidence             4555555555555555555555555555555555555555555555555555555555555555555443 34555555


Q ss_pred             EccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccC
Q 001313          761 HLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNL  840 (1102)
Q Consensus       761 ~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  840 (1102)
                      ++++|++.+.+|. .+.++++|++|++++|++++.+|.+++.+++|++|+|++|+++|.+|..+..+++|+.||+++|++
T Consensus       472 ~L~~N~l~~~~p~-~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  550 (768)
T 3rgz_A          472 ILDFNDLTGEIPS-GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF  550 (768)
T ss_dssp             ECCSSCCCSCCCG-GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred             EecCCcccCcCCH-HHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence            5555666666666 777888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCCCCcccccccccccccCCCCCCCccchhhhcCCccCCcccc-ccceeeeeccceeeeccCCcCCCCceEECCCCCCCC
Q 001313          841 HGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQ-ILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIG  919 (1102)
Q Consensus       841 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~  919 (1102)
                      +|.+|.++...............     .+............. ......+.  +..... -.....+..++++.|.+.|
T Consensus       551 ~g~ip~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~l~~~~~~~l~~~~~~g  622 (768)
T 3rgz_A          551 NGTIPAAMFKQSGKIAANFIAGK-----RYVYIKNDGMKKECHGAGNLLEFQ--GIRSEQ-LNRLSTRNPCNITSRVYGG  622 (768)
T ss_dssp             ESBCCGGGGTTTTCBCCSTTCSC-----EEEEEECCSCCTTCCSSEEEEECT--TCCGGG-GGGGGGTCCSCTTSCEEEE
T ss_pred             CCcCChHHhcccchhhhhccccc-----cccccccccccccccccccccccc--cccchh-hhccccccccccccceecc
Confidence            88888776554321111000000     000000000000000 00000000  000000 0011235668899999999


Q ss_pred             CCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCCccccc
Q 001313          920 HIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQ  999 (1102)
Q Consensus       920 ~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~  999 (1102)
                      .+|..++.+++|++||||+|+++|.+|..|+++++|+.|||++|+++|.+|..++++++|++||+++|+++|.+|..+..
T Consensus       623 ~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~  702 (768)
T 3rgz_A          623 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA  702 (768)
T ss_dssp             ECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGG
T ss_pred             cCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998899


Q ss_pred             cCCCCccccCCCCC
Q 001313         1000 FATFNESSYEGNPF 1013 (1102)
Q Consensus      1000 ~~~~~~~~~~gN~~ 1013 (1102)
                      +..+..+++.+|+.
T Consensus       703 l~~L~~L~ls~N~l  716 (768)
T 3rgz_A          703 LTMLTEIDLSNNNL  716 (768)
T ss_dssp             CCCCSEEECCSSEE
T ss_pred             CCCCCEEECcCCcc
Confidence            99999999999974

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=6.2e-56  Score=550.22  Aligned_cols=394  Identities=23%  Similarity=0.207  Sum_probs=253.5

Q ss_pred             CCCcEEEccCCCCcCCCcCCCCCCC--CcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcE
Q 001313          538 TKLRQLSLVNDSLVGPFRLPIHSHK--QLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQF  615 (1102)
Q Consensus       538 ~~L~~L~L~~n~l~~~~~~~~~~~~--~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  615 (1102)
                      ++|++|++++|.+.+..+..+..++  +|++|++++|.+++..|..+.. +++|++|++++|++.+..|..|.++++|++
T Consensus       222 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  300 (680)
T 1ziw_A          222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW-LPQLEYFFLEYNNIQHLFSHSLHGLFNVRY  300 (680)
T ss_dssp             SCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTT-CTTCCEEECCSCCBSEECTTTTTTCTTCCE
T ss_pred             ccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccC-cccccEeeCCCCccCccChhhhcCCCCccE
Confidence            3444444444444444444444333  3667777777766444444433 677777777777777777777777777777


Q ss_pred             EEccCcccccccc--------hhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccCccCccc--CCCCcCCC--
Q 001313          616 LDLSNNQLTGEIP--------EHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGE--IPQSLSKC--  683 (1102)
Q Consensus       616 L~Ls~n~l~~~ip--------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l--  683 (1102)
                      |++++|...+.++        ...+..+++|++|++++|.+++..+..+.++++|++|++++|.+...  .+..|..+  
T Consensus       301 L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~  380 (680)
T 1ziw_A          301 LNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH  380 (680)
T ss_dssp             EECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTT
T ss_pred             EeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhccccc
Confidence            7777765443221        12233444555555555555554444444555555555555443211  11122211  


Q ss_pred             CCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCc-ccccCCCcccEEEccCcccccCCCCCCCCccccEEEc
Q 001313          684 SSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIP-LEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHL  762 (1102)
Q Consensus       684 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l  762 (1102)
                      ++|+.|++++|++++..|..+..+++|+.|++++|.+++.+| ..|..++                       +|++|++
T Consensus       381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~-----------------------~L~~L~L  437 (680)
T 1ziw_A          381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLE-----------------------NIFEIYL  437 (680)
T ss_dssp             SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCT-----------------------TCCEEEC
T ss_pred             CcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcc-----------------------cccEEec
Confidence            244444444444444444444444444444444444443332 3344444                       4445555


Q ss_pred             cCcccccccCcccccCccCccEEEccCccCc--ccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccC
Q 001313          763 SKNMLHGQLKEGTFFNCLTLMILDLSYNHLN--GNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNL  840 (1102)
Q Consensus       763 ~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  840 (1102)
                      ++|++.+..+ ..|..+++|+.|++++|.++  +.+|..+..+++|+.|++++|++++..|..|..+++|++|++++|++
T Consensus       438 s~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l  516 (680)
T 1ziw_A          438 SYNKYLQLTR-NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL  516 (680)
T ss_dssp             CSCSEEECCT-TTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCCcceeCh-hhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCc
Confidence            5555443333 37888889999999999887  57888899999999999999999988888899999999999999998


Q ss_pred             CCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCC
Q 001313          841 HGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGH  920 (1102)
Q Consensus       841 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~  920 (1102)
                      ++..+..+......       .                                      -.-.+.|+.|+|++|+++..
T Consensus       517 ~~~~~~~~~~~~~~-------~--------------------------------------~~~l~~L~~L~L~~N~l~~i  551 (680)
T 1ziw_A          517 ARLWKHANPGGPIY-------F--------------------------------------LKGLSHLHILNLESNGFDEI  551 (680)
T ss_dssp             GGGGSTTSTTSCCC-------T--------------------------------------TTTCTTCCEEECCSSCCCCC
T ss_pred             cccchhhccCCcch-------h--------------------------------------hcCCCCCCEEECCCCCCCCC
Confidence            86543322110000       0                                      00123689999999999955


Q ss_pred             CcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhh-cCCCCCEEEcccCcCcccCCccccc
Q 001313          921 IPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLV-ELNTLAVFSVAYNNLSGKIPERAAQ  999 (1102)
Q Consensus       921 ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~l~ls~N~l~~~~p~~~~~  999 (1102)
                      .+..|.++++|++|+|++|++++..+..|.++++|+.|+|++|+|++..|..+. .+++|+.+++++|++.|.++. ..+
T Consensus       552 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~-~~~  630 (680)
T 1ziw_A          552 PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES-IAW  630 (680)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC-CSS
T ss_pred             CHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc-HHH
Confidence            555799999999999999999988888899999999999999999998888887 789999999999999998874 244


Q ss_pred             cCC
Q 001313         1000 FAT 1002 (1102)
Q Consensus      1000 ~~~ 1002 (1102)
                      |..
T Consensus       631 ~~~  633 (680)
T 1ziw_A          631 FVN  633 (680)
T ss_dssp             EEC
T ss_pred             HHH
Confidence            433

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=4.5e-56  Score=551.47  Aligned_cols=574  Identities=20%  Similarity=0.225  Sum_probs=484.3

Q ss_pred             CCCCcEEecccCcCcCCcccccCCccCCCCccEEEcCCCcCCCCcchhccCCCCCcEEEcCCCccccccCCcccccCCcc
Q 001313          359 MPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSI  438 (1102)
Q Consensus       359 l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L  438 (1102)
                      .+++++|++++|.+.+..+.   .+..+++|++|++++|.+.+..|..+.++++|++|++++|.+. .+++..+.++++|
T Consensus        24 ~~~l~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L   99 (680)
T 1ziw_A           24 PTNITVLNLTHNQLRRLPAA---NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNL   99 (680)
T ss_dssp             CTTCSEEECCSSCCCCCCGG---GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred             CCCCcEEECCCCCCCCcCHH---HHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCC
Confidence            35788888888888776655   6777888999999988888888888888899999999988877 4546678888899


Q ss_pred             CeeecCCcccccccCccccccCCcceEEecCCCccchhhhccccCCCCcccceeeeeccCCCCCCccCccccCCCcccEE
Q 001313          439 EDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYV  518 (1102)
Q Consensus       439 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~p~~l~~~~~L~~L  518 (1102)
                      ++|++++|.++ .++...+.++++|++|++++|.+...                            .|..+..+++|+.|
T Consensus       100 ~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~----------------------------~~~~~~~l~~L~~L  150 (680)
T 1ziw_A          100 TELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSST----------------------------KLGTQVQLENLQEL  150 (680)
T ss_dssp             SEEECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCC----------------------------CCCSSSCCTTCCEE
T ss_pred             CEEECCCCccC-ccChhHccccCCCCEEECCCCccccc----------------------------CchhhcccccCCEE
Confidence            99999988886 44445678888899998888876532                            34455678899999


Q ss_pred             EeccccCCCCCChhhh-hcCCCCcEEEccCCCCcCCCcCCCCCCCCcCEEEccCCcCCCCCCchhhh--cCCCCcEEEcc
Q 001313          519 RLSHIKMNEEFPNWLL-ENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGD--ILSRLTVFNIS  595 (1102)
Q Consensus       519 ~ls~~~~~~~~p~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~--~l~~L~~L~Ls  595 (1102)
                      ++++|.+.+..+..+. ..+++|++|++++|.+.+..+..+..+++|+.++++++.+.+.....+..  ..++|+.|+++
T Consensus       151 ~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~  230 (680)
T 1ziw_A          151 LLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS  230 (680)
T ss_dssp             ECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECT
T ss_pred             EccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEcc
Confidence            9999998887766542 35689999999999999888888889999999999998876432222211  14789999999


Q ss_pred             CCcccccCCcccCCCCC--CcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccCccCc
Q 001313          596 MNALDGSIPSSFGNMNF--LQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFV  673 (1102)
Q Consensus       596 ~n~l~~~~~~~~~~l~~--L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  673 (1102)
                      +|.+++..|..|.+++.  |++|++++|++++ ++...+..+++|++|++++|++++..+..+.++++|++|++++|...
T Consensus       231 ~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~  309 (680)
T 1ziw_A          231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK  309 (680)
T ss_dssp             TSCCCEECTTTTGGGGGSCCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCC
T ss_pred             CCcccccChhHhhccCcCCCCEEECCCCCcCc-cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhh
Confidence            99999999999988865  9999999999985 44444568999999999999999999999999999999999987655


Q ss_pred             c-----cCC----CCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCC--CcccccCC--CcccEEEcc
Q 001313          674 G-----EIP----QSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGP--IPLEFCQL--RILQILDIS  740 (1102)
Q Consensus       674 ~-----~~~----~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l--~~L~~L~ls  740 (1102)
                      +     .+|    ..|..+++|++|++++|.+++..|..|.++++|++|++++|.+...  .+..|..+  ++|+.|+++
T Consensus       310 ~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~  389 (680)
T 1ziw_A          310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLT  389 (680)
T ss_dssp             C------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECT
T ss_pred             cccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECC
Confidence            3     233    3788999999999999999998899999999999999999986432  22334433  589999999


Q ss_pred             CcccccCCCCCC-CCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCcccc--
Q 001313          741 DNNISGSLPSCY-DFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLE--  817 (1102)
Q Consensus       741 ~n~l~~~~p~~~-~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~--  817 (1102)
                      +|++++..|..+ .+++|+.|++++|.+.+.+|...|.++++|++|++++|++++..+..|..+++|+.|++++|.++  
T Consensus       390 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~  469 (680)
T 1ziw_A          390 KNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV  469 (680)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCT
T ss_pred             CCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccccccc
Confidence            999999888766 57899999999999999888779999999999999999999999999999999999999999987  


Q ss_pred             ccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceee
Q 001313          818 GEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITY  897 (1102)
Q Consensus       818 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  897 (1102)
                      +.+|..+..+++|+.|++++|++++..|..|.+++                                             
T Consensus       470 ~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~---------------------------------------------  504 (680)
T 1ziw_A          470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE---------------------------------------------  504 (680)
T ss_dssp             TCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT---------------------------------------------
T ss_pred             ccCCcccccCCCCCEEECCCCCCCcCChhhhcccc---------------------------------------------
Confidence            57899999999999999999999988887776654                                             


Q ss_pred             eccCCcCCCCceEECCCCCCCCCC--------cccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccC
Q 001313          898 TYQGRVPSLLSGLDLSCNRLIGHI--------PPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKI  969 (1102)
Q Consensus       898 ~~~~~~~~~L~~L~Ls~N~l~~~i--------p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  969 (1102)
                              .|+.|+|++|++++..        +..|.++++|++|+|++|+++...+..|.++++|+.|||++|++++..
T Consensus       505 --------~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~  576 (680)
T 1ziw_A          505 --------KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLP  576 (680)
T ss_dssp             --------TCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             --------ccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCC
Confidence                    6899999999998642        234889999999999999999766678999999999999999999877


Q ss_pred             chhhhcCCCCCEEEcccCcCcccCCcccc-ccCCCCccccCCCCCCCCCCC
Q 001313          970 PYQLVELNTLAVFSVAYNNLSGKIPERAA-QFATFNESSYEGNPFLCGPPL 1019 (1102)
Q Consensus       970 p~~l~~l~~L~~l~ls~N~l~~~~p~~~~-~~~~~~~~~~~gN~~lC~~~~ 1019 (1102)
                      +..|.++++|+.|++++|++++..|..+. .+..+..+++.+||+.|+|+.
T Consensus       577 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          577 ASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             HhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence            77889999999999999999998877555 678888999999999999874

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=3.2e-52  Score=525.99  Aligned_cols=546  Identities=23%  Similarity=0.185  Sum_probs=369.3

Q ss_pred             CCCCcEEecccCcCcCCcccccCCccCCCCccEEEcCCCcCCCCc-chhccCCCCCcEEEcCCCccccccCCcccccCCc
Q 001313          359 MPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSL-PWCLANMTSLRILDVSSNQLIGSISSSPLIHLTS  437 (1102)
Q Consensus       359 l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~  437 (1102)
                      .+++++|++++|.+++..+.   .+..+++|++|+|++|...+.+ |..|.++++|++|++++|.+.+.. +..+.++++
T Consensus        23 p~~l~~LdLs~N~i~~i~~~---~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~-p~~~~~l~~   98 (844)
T 3j0a_A           23 LNTTERLLLSFNYIRTVTAS---SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH-PDAFQGLFH   98 (844)
T ss_dssp             CTTCCEEEEESCCCCEECSS---SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC-TTSSCSCSS
T ss_pred             CCCcCEEECCCCcCCccChh---HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC-HhHccCCcc
Confidence            56777777777777665554   6667777777777777555544 566777777777777777766443 666777777


Q ss_pred             cCeeecCCcccccccC-ccccccCCcceEEecCCCccchhhhccccCCCCcccceeeeeccCCCCCCccCccccCCCccc
Q 001313          438 IEDLILSDNHFQIPIS-LEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLE  516 (1102)
Q Consensus       438 L~~L~L~~n~l~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~p~~l~~~~~L~  516 (1102)
                      |++|++++|.+++..+ ...+.++++|++|++++|.+....                           .+..+..+++|+
T Consensus        99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~---------------------------~~~~~~~L~~L~  151 (844)
T 3j0a_A           99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY---------------------------LHPSFGKLNSLK  151 (844)
T ss_dssp             CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC---------------------------CCGGGGTCSSCC
T ss_pred             cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccc---------------------------cchhHhhCCCCC
Confidence            7777777777665332 223556666666666666543211                           123345555666


Q ss_pred             EEEeccccCCCCCChhhhhcC--CCCcEEEccCCCCcCCCcCCCCCCCC------cCEEEccCCcCCCCCCchhhhcC--
Q 001313          517 YVRLSHIKMNEEFPNWLLENN--TKLRQLSLVNDSLVGPFRLPIHSHKQ------LRLLDVSKNNFQGHIPLEIGDIL--  586 (1102)
Q Consensus       517 ~L~ls~~~~~~~~p~~~~~~~--~~L~~L~L~~n~l~~~~~~~~~~~~~------L~~L~ls~n~l~~~ip~~~~~~l--  586 (1102)
                      .|++++|.+.+..+..+. .+  ++|+.|++++|.+.+..+..+..+++      |+.|++++|.+++.++..+...+  
T Consensus       152 ~L~Ls~N~i~~~~~~~l~-~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~  230 (844)
T 3j0a_A          152 SIDFSSNQIFLVCEHELE-PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK  230 (844)
T ss_dssp             EEEEESSCCCCCCSGGGH-HHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCS
T ss_pred             EEECCCCcCCeeCHHHcc-cccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCc
Confidence            666666666555554432 22  45555555555555544444333333      55555555555544444443221  


Q ss_pred             CCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcC--CCCcEEEccccccCCcccccccCCCccCe
Q 001313          587 SRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGC--VSLRSLALSNNNLEGHMFSRNFNLTNLIW  664 (1102)
Q Consensus       587 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  664 (1102)
                      +.++.+.++.+....               ++..+++. .+....+.++  ++|+.|++++|.+.+..+..+..+++|++
T Consensus       231 ~~l~~L~l~~~~~~~---------------~~~~~~l~-~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  294 (844)
T 3j0a_A          231 SQAFSLILAHHIMGA---------------GFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV  294 (844)
T ss_dssp             CCBSEEECCSSCCBC---------------SSSCSSST-TGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCE
T ss_pred             ccccceecccccccc---------------cccccccC-CCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCE
Confidence            234444444222110               01122232 1222222333  67888888888888888888888888888


Q ss_pred             eeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCccc
Q 001313          665 LQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNI  744 (1102)
Q Consensus       665 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l  744 (1102)
                      |++++|.+++..|..|..+++|++|++++|.+++..|..|..+++|+.|++++|.+++..+..|..+++|+.|++++|.+
T Consensus       295 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l  374 (844)
T 3j0a_A          295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL  374 (844)
T ss_dssp             EEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCS
T ss_pred             EECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCC
Confidence            88888888888888888888888888888888877788888888888888888888877777888888888888888888


Q ss_pred             ccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCC-ccccCCCCCCEEEccCccccccCch-
Q 001313          745 SGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIP-DRVDGLSQLSYLILAHNNLEGEVPI-  822 (1102)
Q Consensus       745 ~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~-  822 (1102)
                      ++.. .   +++|+.+++++|++. .+|. .   ..+++.|++++|++++... ..+..+++|++|+|++|++++..+. 
T Consensus       375 ~~i~-~---~~~L~~L~l~~N~l~-~l~~-~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  445 (844)
T 3j0a_A          375 TTIH-F---IPSIPDIFLSGNKLV-TLPK-I---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ  445 (844)
T ss_dssp             CCCS-S---CCSCSEEEEESCCCC-CCCC-C---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSS
T ss_pred             Cccc-C---CCCcchhccCCCCcc-cccc-c---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccc
Confidence            7432 2   667888888888887 4555 2   4578889999998886432 2355788999999999998865443 


Q ss_pred             hhcCCCCCCEEECcCccCCCCCC-----cccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceee
Q 001313          823 QLCRLNQLQLLDLSNNNLHGHIP-----SCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITY  897 (1102)
Q Consensus       823 ~~~~l~~L~~L~Ls~N~l~~~~p-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  897 (1102)
                      .+..+++|+.|++++|.+++..+     ..|.++                                              
T Consensus       446 ~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l----------------------------------------------  479 (844)
T 3j0a_A          446 TPSENPSLEQLFLGENMLQLAWETELCWDVFEGL----------------------------------------------  479 (844)
T ss_dssp             SSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCB----------------------------------------------
T ss_pred             ccccCCccccccCCCCccccccccccchhhhcCc----------------------------------------------
Confidence            45668889999999998874433     222222                                              


Q ss_pred             eccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCC
Q 001313          898 TYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELN  977 (1102)
Q Consensus       898 ~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  977 (1102)
                             +.|+.|+|++|++++..|..|..+++|+.|+|++|+|++..|..+.  ++|+.|||++|+|++.+|..+.   
T Consensus       480 -------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---  547 (844)
T 3j0a_A          480 -------SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---  547 (844)
T ss_dssp             -------CCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---
T ss_pred             -------ccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---
Confidence                   2688899999999988888899999999999999999988887776  7899999999999998887754   


Q ss_pred             CCCEEEcccCcCcccCCccccccCCCCccccCCCCCCCCCCCCCCCC
Q 001313          978 TLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICIS 1024 (1102)
Q Consensus       978 ~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~gN~~lC~~~~~~~c~ 1024 (1102)
                      +|+.+++++|++.|.++.  .+   |..+....|..+||.+....|.
T Consensus       548 ~L~~l~l~~Np~~C~c~~--~~---f~~~~~~~~~~~~~~~~~~~C~  589 (844)
T 3j0a_A          548 SLSVLDITHNKFICECEL--ST---FINWLNHTNVTIAGPPADIYCV  589 (844)
T ss_dssp             SCCEEEEEEECCCCSSSC--CS---HHHHHHHTTTTTCCCGGGCCCS
T ss_pred             CcCEEEecCCCccccccc--HH---HHHHHHhcCcccccccccCccC
Confidence            678899999999887763  22   2222334455566665555554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.4e-50  Score=495.31  Aligned_cols=494  Identities=22%  Similarity=0.240  Sum_probs=233.8

Q ss_pred             CCcEEecccCcCcCCcccccCCccCCCCccEEEcCCCcCCCCcchhccCCCCCcEEEcCCCccccccCCcccccCCccCe
Q 001313          361 SIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIED  440 (1102)
Q Consensus       361 ~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~  440 (1102)
                      .+++|++++|.+++..+.   .+..+++|++|++++|.+.+..|..|.++++|++|++++|++.+.. +..+.++++|++
T Consensus        34 ~l~~L~Ls~n~i~~~~~~---~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~  109 (606)
T 3t6q_A           34 STECLEFSFNVLPTIQNT---TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMA-ETALSGPKALKH  109 (606)
T ss_dssp             TCCEEECTTCCCSEECTT---TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEEC-TTTTSSCTTCCE
T ss_pred             cCcEEEccCCccCcCChh---HhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccC-hhhhcccccccE
Confidence            455666666655544443   4555566666666666655555555666666666666666555322 444555555555


Q ss_pred             eecCCcccccccCccccccCCcceEEecCCCccchhhhccccCCCCcccceeeeeccCCCCCCccCccccCCCcccEEEe
Q 001313          441 LILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRL  520 (1102)
Q Consensus       441 L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~p~~l~~~~~L~~L~l  520 (1102)
                      |++++|.+++. +...+                                                    .          
T Consensus       110 L~L~~n~i~~l-~~~~~----------------------------------------------------~----------  126 (606)
T 3t6q_A          110 LFFIQTGISSI-DFIPL----------------------------------------------------H----------  126 (606)
T ss_dssp             EECTTSCCSCG-GGSCC----------------------------------------------------T----------
T ss_pred             eeccccCcccC-Ccchh----------------------------------------------------c----------
Confidence            55555554421 01111                                                    2          


Q ss_pred             ccccCCCCCChhhhhcCCCCcEEEccCCCCcCCCcCCCCCCCCcCEEEccCCcCCCCCCchhhhcCCCCc--EEEccCCc
Q 001313          521 SHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLT--VFNISMNA  598 (1102)
Q Consensus       521 s~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~--~L~Ls~n~  598 (1102)
                                     ++++|++|++++|.+.+.....+..+++|++|++++|.+++..|..+.. +++|+  .|++++|.
T Consensus       127 ---------------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~l~L~l~~n~  190 (606)
T 3t6q_A          127 ---------------NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS-LQQATNLSLNLNGND  190 (606)
T ss_dssp             ---------------TCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHT-TTTCCSEEEECTTCC
T ss_pred             ---------------cCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhh-hcccceeEEecCCCc
Confidence                           3333444444444433322222223445555555555555332333322 45555  55555555


Q ss_pred             ccccCCcccCCCCCCcEEEccCcccc-------------------------cccchhHhhcCC--CCcEEEccccccCCc
Q 001313          599 LDGSIPSSFGNMNFLQFLDLSNNQLT-------------------------GEIPEHLAMGCV--SLRSLALSNNNLEGH  651 (1102)
Q Consensus       599 l~~~~~~~~~~l~~L~~L~Ls~n~l~-------------------------~~ip~~~~~~l~--~L~~L~L~~n~l~~~  651 (1102)
                      +++..|..|.. ..|+.|++++|...                         ..++...+.++.  +|+.|++++|.+++.
T Consensus       191 l~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~  269 (606)
T 3t6q_A          191 IAGIEPGAFDS-AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI  269 (606)
T ss_dssp             CCEECTTTTTT-CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSC
T ss_pred             cCccChhHhhh-ccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCcc
Confidence            55554444433 34555555555311                         012222222222  445555555555555


Q ss_pred             ccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcc-cccC
Q 001313          652 MFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPL-EFCQ  730 (1102)
Q Consensus       652 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~  730 (1102)
                      .+..+.++++|++|++++|.++ .+|..+..+++|++|++++|++.+..|..+..+++|++|++++|.+.+.+|. .+..
T Consensus       270 ~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~  348 (606)
T 3t6q_A          270 SSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN  348 (606)
T ss_dssp             CTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTT
T ss_pred             CHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhc
Confidence            4444555555555555555554 3444455555555555555555544444455555555555555554433332 2445


Q ss_pred             CCcccEEEccCcccccCC--CC-CCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCc-cccCCCCC
Q 001313          731 LRILQILDISDNNISGSL--PS-CYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPD-RVDGLSQL  806 (1102)
Q Consensus       731 l~~L~~L~ls~n~l~~~~--p~-~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~-~~~~l~~L  806 (1102)
                      +++|++|++++|.+++..  |. ...+++|++|++++|++.+..|. .|..+++|++|++++|++++..|. .+..+++|
T Consensus       349 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  427 (606)
T 3t6q_A          349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE-AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL  427 (606)
T ss_dssp             CTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTT-TTTTCTTCSEEECTTCCEECCTTCCTTTTCTTC
T ss_pred             cCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHH-HhcCCccCCeEECCCCcCCCcccchhhhCcccC
Confidence            555555555555554432  22 12344455555555544443333 444445555555555554444332 24444555


Q ss_pred             CEEEccCccccccCchhhcCCCCCCEEECcCccCCCCC---CcccccccccccccCCCCCCCccchhhhcCCccCCcccc
Q 001313          807 SYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHI---PSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQ  883 (1102)
Q Consensus       807 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  883 (1102)
                      ++|++++|++++..|..+..+++|++|++++|++++..   +..+..++                               
T Consensus       428 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~-------------------------------  476 (606)
T 3t6q_A          428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG-------------------------------  476 (606)
T ss_dssp             CEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCT-------------------------------
T ss_pred             CEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCC-------------------------------
Confidence            55555555554444444444555555555555444311   11111111                               


Q ss_pred             ccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCC
Q 001313          884 ILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYN  963 (1102)
Q Consensus       884 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  963 (1102)
                                            .|+.|++++|++++..|..|+.+++|++|+|++|++++.+|..|.+++.| .|||++|
T Consensus       477 ----------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N  533 (606)
T 3t6q_A          477 ----------------------RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN  533 (606)
T ss_dssp             ----------------------TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS
T ss_pred             ----------------------CccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC
Confidence                                  34445555555554444455555555555555555555555555555555 5555555


Q ss_pred             cCcccCchhhhcCCCCCEEEcccCcCcccCC
Q 001313          964 KLSWKIPYQLVELNTLAVFSVAYNNLSGKIP  994 (1102)
Q Consensus       964 ~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p  994 (1102)
                      ++++.+|..+..+++|+++++++|++.|.++
T Consensus       534 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          534 HISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             CCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             cccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            5554444444444555555555555544443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=6.5e-51  Score=498.28  Aligned_cols=304  Identities=26%  Similarity=0.296  Sum_probs=237.7

Q ss_pred             CCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeec
Q 001313          588 RLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQL  667 (1102)
Q Consensus       588 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  667 (1102)
                      +|+.|++++|.+++..+..|+.+++|++|++++|+++ .+|..+ ..+++|++|++++|.+++..+..+.++++|++|++
T Consensus       255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  332 (606)
T 3t6q_A          255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGL-VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI  332 (606)
T ss_dssp             EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSC-CSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEEC
T ss_pred             ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhh-cccccCCEEECccCCcCcCchhhhhccCcCCEEEC
Confidence            4566666666666665666666666666666666666 566554 35666666666666666666666667777777777


Q ss_pred             cCccCcccCCC-CcCCCCCCcEEEccCCcCCCCC--CccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCccc
Q 001313          668 EGNHFVGEIPQ-SLSKCSSLQGLFLSNNSLSGKI--PRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNI  744 (1102)
Q Consensus       668 ~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~--p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l  744 (1102)
                      ++|.+.+.+|. .+..+++|++|++++|.+++..  |..+..+++|++|++++|.+++..|..|..+++|+.|++++|++
T Consensus       333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  412 (606)
T 3t6q_A          333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL  412 (606)
T ss_dssp             CSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCE
T ss_pred             CCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcC
Confidence            77777655544 4777778888888888777554  66677777888888888877777777777777777777777776


Q ss_pred             ccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCcccccc---Cc
Q 001313          745 SGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGE---VP  821 (1102)
Q Consensus       745 ~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~---~p  821 (1102)
                      .+.                       .+...|.++++|++|++++|.+++..|..+..+++|++|++++|++++.   .+
T Consensus       413 ~~~-----------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  469 (606)
T 3t6q_A          413 KVK-----------------------DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKT  469 (606)
T ss_dssp             ECC-----------------------TTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSS
T ss_pred             CCc-----------------------ccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccc
Confidence            643                       3332577788899999999999888888899999999999999999863   34


Q ss_pred             hhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccC
Q 001313          822 IQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQG  901 (1102)
Q Consensus       822 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  901 (1102)
                      ..+..+++|++|++++|++++..|..|.+++                                                 
T Consensus       470 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-------------------------------------------------  500 (606)
T 3t6q_A          470 NSLQTLGRLEILVLSFCDLSSIDQHAFTSLK-------------------------------------------------  500 (606)
T ss_dssp             CGGGGCTTCCEEECTTSCCCEECTTTTTTCT-------------------------------------------------
T ss_pred             hhhccCCCccEEECCCCccCccChhhhcccc-------------------------------------------------
Confidence            6788999999999999999988888776654                                                 


Q ss_pred             CcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCc
Q 001313          902 RVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIP  970 (1102)
Q Consensus       902 ~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  970 (1102)
                          .|+.|||++|++++.+|+.|.+++.| +|+|++|++++.+|..|..+++|+.|++++|.+++..+
T Consensus       501 ----~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          501 ----MMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             ----TCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             ----CCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence                68999999999999999999999999 99999999999999999999999999999999998665

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.7e-50  Score=510.27  Aligned_cols=528  Identities=20%  Similarity=0.212  Sum_probs=413.0

Q ss_pred             EEecccCcCcCCcccccCCccCCCCccEEEcCCCcCCCCcchhccCCCCCcEEEcCCCccccccCCcccccCCccCeeec
Q 001313          364 YLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLIL  443 (1102)
Q Consensus       364 ~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L  443 (1102)
                      ..+.+++.++....       -.+++++|+|++|.+++..|..|.++++|++|++++|...+.+++..+.++++|++|++
T Consensus         8 ~~dcs~~~L~~vP~-------lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~L   80 (844)
T 3j0a_A            8 IAFYRFCNLTQVPQ-------VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL   80 (844)
T ss_dssp             EEEESCCCSSCCCS-------SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEEC
T ss_pred             EEEccCCCCCCCCC-------CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEEC
Confidence            45556666554321       24678888888888887777788888888888888887777777777788888888888


Q ss_pred             CCcccccccCccccccCCcceEEecCCCccchhhhccccCCCCcccceeeeeccCCCCCCccCccccCCCcccEEEeccc
Q 001313          444 SDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHI  523 (1102)
Q Consensus       444 ~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~p~~l~~~~~L~~L~ls~~  523 (1102)
                      ++|.+.+. ....+.++++|+                                                    +|++++|
T Consensus        81 s~N~l~~~-~p~~~~~l~~L~----------------------------------------------------~L~Ls~n  107 (844)
T 3j0a_A           81 GSSKIYFL-HPDAFQGLFHLF----------------------------------------------------ELRLYFC  107 (844)
T ss_dssp             TTCCCCEE-CTTSSCSCSSCC----------------------------------------------------CEECTTC
T ss_pred             CCCcCccc-CHhHccCCcccC----------------------------------------------------EeeCcCC
Confidence            88777632 223344445444                                                    4555555


Q ss_pred             cCCCCCCh-hhhhcCCCCcEEEccCCCCcCCCc-CCCCCCCCcCEEEccCCcCCCCCCchhhhcC--CCCcEEEccCCcc
Q 001313          524 KMNEEFPN-WLLENNTKLRQLSLVNDSLVGPFR-LPIHSHKQLRLLDVSKNNFQGHIPLEIGDIL--SRLTVFNISMNAL  599 (1102)
Q Consensus       524 ~~~~~~p~-~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l--~~L~~L~Ls~n~l  599 (1102)
                      .+.+.+|. ..+.++++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..+..+.. +  ++|+.|+++.|.+
T Consensus       108 ~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~-l~~~~L~~L~L~~n~l  186 (844)
T 3j0a_A          108 GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP-LQGKTLSFFSLAANSL  186 (844)
T ss_dssp             CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH-HHHCSSCCCEECCSBS
T ss_pred             CCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc-ccCCccceEECCCCcc
Confidence            54443332 224466666777777766665443 34667777778888887777666666554 4  7788888888888


Q ss_pred             cccCCcccCCCCC------CcEEEccCcccccccchhHhhcC--CCCcEEEccc---------cccCCcccccccCC--C
Q 001313          600 DGSIPSSFGNMNF------LQFLDLSNNQLTGEIPEHLAMGC--VSLRSLALSN---------NNLEGHMFSRNFNL--T  660 (1102)
Q Consensus       600 ~~~~~~~~~~l~~------L~~L~Ls~n~l~~~ip~~~~~~l--~~L~~L~L~~---------n~l~~~~~~~~~~l--~  660 (1102)
                      .+..|..+..+.+      |++|++++|++++.+|..+....  .+++.+.++.         +.+.......+.++  +
T Consensus       187 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~  266 (844)
T 3j0a_A          187 YSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARS  266 (844)
T ss_dssp             CCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTS
T ss_pred             ccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccC
Confidence            8877777766665      88888888888877776654332  5677777763         34444445555554  7


Q ss_pred             ccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEcc
Q 001313          661 NLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDIS  740 (1102)
Q Consensus       661 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls  740 (1102)
                      +|++|++++|.+.+..+..|..+++|+.|++++|++++..|..|..+++|+.|++++|.+++..|..|..+++|+.|+++
T Consensus       267 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  346 (844)
T 3j0a_A          267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ  346 (844)
T ss_dssp             CCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECC
T ss_pred             CccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECC
Confidence            89999999999999999999999999999999999999999999999999999999999999989999999999999999


Q ss_pred             CcccccCCCCCC-CCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCcccccc
Q 001313          741 DNNISGSLPSCY-DFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGE  819 (1102)
Q Consensus       741 ~n~l~~~~p~~~-~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  819 (1102)
                      +|++.+..+..+ .+++|+.|++++|.+++      +..+++|+.|++++|+++ .+|..   ..+++.|++++|++++.
T Consensus       347 ~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~------i~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l  416 (844)
T 3j0a_A          347 KNHIAIIQDQTFKFLEKLQTLDLRDNALTT------IHFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENL  416 (844)
T ss_dssp             SCCCCCCCSSCSCSCCCCCEEEEETCCSCC------CSSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSS
T ss_pred             CCCCCccChhhhcCCCCCCEEECCCCCCCc------ccCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccC
Confidence            999987777655 57999999999999974      333789999999999998 45544   46799999999999975


Q ss_pred             C-chhhcCCCCCCEEECcCccCCCCCCccc-ccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceee
Q 001313          820 V-PIQLCRLNQLQLLDLSNNNLHGHIPSCF-DNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITY  897 (1102)
Q Consensus       820 ~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  897 (1102)
                      . +..+..+++|+.|+|++|++++..+... ..                                               
T Consensus       417 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~-----------------------------------------------  449 (844)
T 3j0a_A          417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSE-----------------------------------------------  449 (844)
T ss_dssp             TTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCS-----------------------------------------------
T ss_pred             chhhhhhcCCccceeeCCCCccccccccccccc-----------------------------------------------
Confidence            3 3456789999999999999986554321 11                                               


Q ss_pred             eccCCcCCCCceEECCCCCCC-----CCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchh
Q 001313          898 TYQGRVPSLLSGLDLSCNRLI-----GHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQ  972 (1102)
Q Consensus       898 ~~~~~~~~~L~~L~Ls~N~l~-----~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  972 (1102)
                            .+.|+.|+|++|.++     +..|..|..+++|++|+|++|++++.+|..|.++++|+.|||++|+|++..|..
T Consensus       450 ------~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~  523 (844)
T 3j0a_A          450 ------NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHND  523 (844)
T ss_dssp             ------CTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCC
T ss_pred             ------CCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhh
Confidence                  236899999999997     556677999999999999999999999999999999999999999999887777


Q ss_pred             hhcCCCCCEEEcccCcCcccCCccccccCCCCccccCCCCCCCCCCCC
Q 001313          973 LVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLP 1020 (1102)
Q Consensus       973 l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~gN~~lC~~~~~ 1020 (1102)
                      +.  ++|++||+++|++++.+|..   +..+..+++.+||+.|+|++.
T Consensus       524 ~~--~~L~~L~Ls~N~l~~~~~~~---~~~L~~l~l~~Np~~C~c~~~  566 (844)
T 3j0a_A          524 LP--ANLEILDISRNQLLAPNPDV---FVSLSVLDITHNKFICECELS  566 (844)
T ss_dssp             CC--SCCCEEEEEEECCCCCCSCC---CSSCCEEEEEEECCCCSSSCC
T ss_pred             hh--ccccEEECCCCcCCCCChhH---hCCcCEEEecCCCcccccccH
Confidence            66  89999999999999999874   456777889999999999763

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=8.6e-50  Score=488.36  Aligned_cols=531  Identities=18%  Similarity=0.186  Sum_probs=389.5

Q ss_pred             cEEecccCcCcCCcccccCCccCCCCccEEEcCCCcCCCCcchhccCCCCCcEEEcCCCccccccCCcccccCCccCeee
Q 001313          363 QYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLI  442 (1102)
Q Consensus       363 ~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~  442 (1102)
                      ++++.+++.++....    .+  .+++++|++++|.+.+..+..|.++++|++|++++|.+++ +.+..|.++++|++|+
T Consensus        14 ~~~~c~~~~l~~ip~----~~--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-i~~~~~~~l~~L~~L~   86 (606)
T 3vq2_A           14 ITYQCMDQKLSKVPD----DI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET-IEDKAWHGLHHLSNLI   86 (606)
T ss_dssp             TEEECTTSCCSSCCT----TS--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEE
T ss_pred             CceEccCCCcccCCC----CC--CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccc-cCHHHhhchhhcCEeE
Confidence            355555555543322    22  2567777777777776666677777777777777777663 3356666777777777


Q ss_pred             cCCcccccccCccccccCCcceEEecCCCccchhhhccccCCCCcccceeeeeccCCCCCCccCccccCCCcccEEEecc
Q 001313          443 LSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSH  522 (1102)
Q Consensus       443 L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~p~~l~~~~~L~~L~ls~  522 (1102)
                      +++|.+++..                                                     |..+..+++|++|++++
T Consensus        87 Ls~n~l~~~~-----------------------------------------------------p~~~~~l~~L~~L~L~~  113 (606)
T 3vq2_A           87 LTGNPIQSFS-----------------------------------------------------PGSFSGLTSLENLVAVE  113 (606)
T ss_dssp             CTTCCCCCCC-----------------------------------------------------TTSSTTCTTCCEEECTT
T ss_pred             CCCCcccccC-----------------------------------------------------hhhcCCcccCCEEEccC
Confidence            7776655221                                                     22233344444455555


Q ss_pred             ccCCCCCChhhhhcCCCCcEEEccCCCCcC-CCcCCCCCCCCcCEEEccCCcCCCCCCchhhhcCCC----CcEEEccCC
Q 001313          523 IKMNEEFPNWLLENNTKLRQLSLVNDSLVG-PFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSR----LTVFNISMN  597 (1102)
Q Consensus       523 ~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~----L~~L~Ls~n  597 (1102)
                      |.+.+..+.. ++++++|++|++++|.+.+ ..+..+..+++|++|++++|++++..|..+.. +++    +.+|++++|
T Consensus       114 n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~~l~~L~l~~n  191 (606)
T 3vq2_A          114 TKLASLESFP-IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF-LRENPQVNLSLDMSLN  191 (606)
T ss_dssp             SCCCCSSSSC-CTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHH-HHHCTTCCCEEECTTC
T ss_pred             Cccccccccc-cCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhh-hhccccccceeeccCC
Confidence            5444433333 4688999999999999987 45778899999999999999998665655543 444    458999999


Q ss_pred             cccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCc------ccccccCCC--ccCeeec-c
Q 001313          598 ALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGH------MFSRNFNLT--NLIWLQL-E  668 (1102)
Q Consensus       598 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~------~~~~~~~l~--~L~~L~L-~  668 (1102)
                      .+++..+..+... +|++|++++|.+++......+..++.|+.+++..+.+...      ....+.++.  .++.+++ .
T Consensus       192 ~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~  270 (606)
T 3vq2_A          192 PIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY  270 (606)
T ss_dssp             CCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECC
T ss_pred             CcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccc
Confidence            9998777777665 8999999999998655555567899999988876554321      112222222  4556666 6


Q ss_pred             CccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCC
Q 001313          669 GNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSL  748 (1102)
Q Consensus       669 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~  748 (1102)
                      .|.+.+..|. +..+++|+.|++++|.+. .+| ++..+++|+.|++++|.+ +.+| .+ .+++|+.|++++|+..+.+
T Consensus       271 ~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~  344 (606)
T 3vq2_A          271 TNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF  344 (606)
T ss_dssp             CTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC
T ss_pred             cccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch
Confidence            6677777776 788888888888888886 456 778888888888888888 5667 45 8888888888888665544


Q ss_pred             CCCCCCccccEEEccCcccccc--cCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCc-hhhc
Q 001313          749 PSCYDFVCIEQVHLSKNMLHGQ--LKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVP-IQLC  825 (1102)
Q Consensus       749 p~~~~~~~L~~L~l~~n~l~~~--i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~  825 (1102)
                       ....+++|+.|++++|++++.  +|. .+..+++|++|++++|.+++ +|..+..+++|++|++++|++.+..| ..+.
T Consensus       345 -~~~~l~~L~~L~ls~n~l~~~~~~~~-~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  421 (606)
T 3vq2_A          345 -KKVALPSLSYLDLSRNALSFSGCCSY-SDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFL  421 (606)
T ss_dssp             -CCCCCTTCCEEECCSSCEEEEEECCH-HHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTT
T ss_pred             -hhccCCCCCEEECcCCccCCCcchhh-hhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhh
Confidence             344678888888888888764  255 77888888888888888875 55778888888888888888887777 6788


Q ss_pred             CCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCC
Q 001313          826 RLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPS  905 (1102)
Q Consensus       826 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  905 (1102)
                      .+++|++|++++|.+++..|..+..++                                                     
T Consensus       422 ~l~~L~~L~l~~n~l~~~~~~~~~~l~-----------------------------------------------------  448 (606)
T 3vq2_A          422 SLEKLLYLDISYTNTKIDFDGIFLGLT-----------------------------------------------------  448 (606)
T ss_dssp             TCTTCCEEECTTSCCEECCTTTTTTCT-----------------------------------------------------
T ss_pred             ccccCCEEECcCCCCCccchhhhcCCC-----------------------------------------------------
Confidence            888888888888888887777766554                                                     


Q ss_pred             CCceEECCCCCCCC-CCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEc
Q 001313          906 LLSGLDLSCNRLIG-HIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSV  984 (1102)
Q Consensus       906 ~L~~L~Ls~N~l~~-~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l  984 (1102)
                      .|+.|++++|++++ .+|..|+.+++|++|+|++|++++.+|..|+++++|++|+|++|++++.+|..+.++++|++|++
T Consensus       449 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l  528 (606)
T 3vq2_A          449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC  528 (606)
T ss_dssp             TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEEC
Confidence            57888888888887 46778888888888888888888888888888888888888888888888888888888888888


Q ss_pred             ccCcCcccCCccccccC-CCCccccCCCCCCCCCCC
Q 001313          985 AYNNLSGKIPERAAQFA-TFNESSYEGNPFLCGPPL 1019 (1102)
Q Consensus       985 s~N~l~~~~p~~~~~~~-~~~~~~~~gN~~lC~~~~ 1019 (1102)
                      ++|+++ .+|..+..+. ++...++.+||+.|+|+.
T Consensus       529 ~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          529 SFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             TTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             CCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            888888 4555455664 477778888888888764

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=4.1e-49  Score=482.36  Aligned_cols=513  Identities=20%  Similarity=0.207  Sum_probs=427.9

Q ss_pred             CCCCcEEecccCcCcCCcccccCCccCCCCccEEEcCCCcCCCCcchhccCCCCCcEEEcCCCccccccCCcccccCCcc
Q 001313          359 MPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSI  438 (1102)
Q Consensus       359 l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L  438 (1102)
                      .+++++|++++|.+.+..+.   .+..+++|++|++++|.+++..|..|.++++|++|++++|.+.+.. +..+.++++|
T Consensus        31 ~~~l~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L  106 (606)
T 3vq2_A           31 PSSTKNIDLSFNPLKILKSY---SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS-PGSFSGLTSL  106 (606)
T ss_dssp             CTTCCEEECTTSCCCEECTT---TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCC-TTSSTTCTTC
T ss_pred             CCCcCEEECCCCCcCEeChh---hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccC-hhhcCCcccC
Confidence            46789999999988876665   7888999999999999998888888999999999999999987544 7888999999


Q ss_pred             CeeecCCcccccccCccccccCCcceEEecCCCccchhhhccccCCCCcccceeeeeccCCCCCCccCccccCCCcccEE
Q 001313          439 EDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYV  518 (1102)
Q Consensus       439 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~p~~l~~~~~L~~L  518 (1102)
                      ++|++++|.+++.. ...+.+++                                                    +|++|
T Consensus       107 ~~L~L~~n~l~~~~-~~~~~~l~----------------------------------------------------~L~~L  133 (606)
T 3vq2_A          107 ENLVAVETKLASLE-SFPIGQLI----------------------------------------------------TLKKL  133 (606)
T ss_dssp             CEEECTTSCCCCSS-SSCCTTCT----------------------------------------------------TCCEE
T ss_pred             CEEEccCCcccccc-ccccCCCC----------------------------------------------------CCCEE
Confidence            99999999876322 12244444                                                    45555


Q ss_pred             EeccccCCC-CCChhhhhcCCCCcEEEccCCCCcCCCcCCCCCCCCcC----EEEccCCcCCCCCCchhhhcCCCCcEEE
Q 001313          519 RLSHIKMNE-EFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLR----LLDVSKNNFQGHIPLEIGDILSRLTVFN  593 (1102)
Q Consensus       519 ~ls~~~~~~-~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~----~L~ls~n~l~~~ip~~~~~~l~~L~~L~  593 (1102)
                      ++++|.+.+ .+|.. +.++++|++|++++|.+++..+..+..+++|+    ++++++|.++ .++...+. ..+|++|+
T Consensus       134 ~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~-~~~L~~L~  210 (606)
T 3vq2_A          134 NVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQ-GIKLHELT  210 (606)
T ss_dssp             ECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCC-EECTTTTT-TCEEEEEE
T ss_pred             eCCCCcccceechHh-HhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcc-eeCccccc-Cceeeeee
Confidence            555555544 44554 46899999999999999988777777666654    8999999998 56666666 35899999


Q ss_pred             ccCCccc-ccCCcccCCCCCCcEEEccCccccc-----ccchhHhhcCC--CCcEEEc-cccccCCcccccccCCCccCe
Q 001313          594 ISMNALD-GSIPSSFGNMNFLQFLDLSNNQLTG-----EIPEHLAMGCV--SLRSLAL-SNNNLEGHMFSRNFNLTNLIW  664 (1102)
Q Consensus       594 Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~-----~ip~~~~~~l~--~L~~L~L-~~n~l~~~~~~~~~~l~~L~~  664 (1102)
                      +++|.+. +..|..+.+++.|+.+++..+.+.+     .++...+.++.  .++.+++ ..|.+++..+. +..+++|+.
T Consensus       211 L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~  289 (606)
T 3vq2_A          211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSA  289 (606)
T ss_dssp             EESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSE
T ss_pred             ccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCE
Confidence            9999987 5677889999999999987654432     22333333333  4667777 77788888877 889999999


Q ss_pred             eeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCccc
Q 001313          665 LQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNI  744 (1102)
Q Consensus       665 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l  744 (1102)
                      |++++|.+. .+| .+..+++|++|++++|.+ +.+|. + .+++|+.|++++|+..+.+  .+..+++|++|++++|.+
T Consensus       290 L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l  362 (606)
T 3vq2_A          290 MSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNAL  362 (606)
T ss_dssp             EEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCE
T ss_pred             EEecCccch-hhh-hccccccCCEEEcccccC-ccccc-C-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCcc
Confidence            999999997 455 889999999999999999 58884 4 9999999999999655443  677899999999999999


Q ss_pred             ccCC--CCC-CCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCC-ccccCCCCCCEEEccCccccccC
Q 001313          745 SGSL--PSC-YDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIP-DRVDGLSQLSYLILAHNNLEGEV  820 (1102)
Q Consensus       745 ~~~~--p~~-~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~  820 (1102)
                      ++..  |.. ..+++|++|++++|.+.+ +|. .|.++++|+.|++++|++.+..| ..+..+++|++|++++|++++..
T Consensus       363 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  440 (606)
T 3vq2_A          363 SFSGCCSYSDLGTNSLRHLDLSFNGAII-MSA-NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF  440 (606)
T ss_dssp             EEEEECCHHHHCCSCCCEEECCSCSEEE-ECC-CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECC
T ss_pred             CCCcchhhhhccCCcccEeECCCCcccc-chh-hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccc
Confidence            8762  433 367899999999999885 665 89999999999999999999888 78999999999999999999999


Q ss_pred             chhhcCCCCCCEEECcCccCCC-CCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeec
Q 001313          821 PIQLCRLNQLQLLDLSNNNLHG-HIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTY  899 (1102)
Q Consensus       821 p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  899 (1102)
                      |..+..+++|++|++++|++++ .+|..|..++                                               
T Consensus       441 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-----------------------------------------------  473 (606)
T 3vq2_A          441 DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT-----------------------------------------------  473 (606)
T ss_dssp             TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT-----------------------------------------------
T ss_pred             hhhhcCCCCCCEEECCCCcCCCcchHHhhccCC-----------------------------------------------
Confidence            9999999999999999999998 4677776654                                               


Q ss_pred             cCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCC-C
Q 001313          900 QGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELN-T  978 (1102)
Q Consensus       900 ~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~  978 (1102)
                            .|+.|+|++|++++..|..|+.+++|++|+|++|++++.+|..|+++++|+.|||++|+++ .+|..+..++ +
T Consensus       474 ------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~  546 (606)
T 3vq2_A          474 ------NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKS  546 (606)
T ss_dssp             ------TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTT
T ss_pred             ------CCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhccc
Confidence                  6899999999999999999999999999999999999999999999999999999999999 6787899987 6


Q ss_pred             CCEEEcccCcCcccCCc
Q 001313          979 LAVFSVAYNNLSGKIPE  995 (1102)
Q Consensus       979 L~~l~ls~N~l~~~~p~  995 (1102)
                      |+++++++|++.|.++.
T Consensus       547 L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          547 LAFFNLTNNSVACICEH  563 (606)
T ss_dssp             CCEEECCSCCCCCSSTT
T ss_pred             CcEEEccCCCcccCCcc
Confidence            99999999999998875

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=7.8e-50  Score=486.95  Aligned_cols=331  Identities=21%  Similarity=0.272  Sum_probs=189.0

Q ss_pred             CCCcEEEccCCCCcCCCcCCCCCCCCcCEEEccCCc-CCC-CCCchhhhc-----CCCCcEEEccCCcccccCCc--ccC
Q 001313          538 TKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNN-FQG-HIPLEIGDI-----LSRLTVFNISMNALDGSIPS--SFG  608 (1102)
Q Consensus       538 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~-l~~-~ip~~~~~~-----l~~L~~L~Ls~n~l~~~~~~--~~~  608 (1102)
                      ++|++|++++|.+.+..+..+..+++|++|++++|+ ++| .+|..++..     +++|++|++++|+++ .+|.  .|+
T Consensus       249 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~  327 (636)
T 4eco_A          249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQ  327 (636)
T ss_dssp             TTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHT
T ss_pred             CCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhc
Confidence            333333333333333334444455566666666665 665 566665541     266666666666666 5665  666


Q ss_pred             CCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCc-cCeeeccCccCcccCCCCcCCCC--C
Q 001313          609 NMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTN-LIWLQLEGNHFVGEIPQSLSKCS--S  685 (1102)
Q Consensus       609 ~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~--~  685 (1102)
                      ++++|++|++++|+++|.+|  .+..+++|++|++++|+++ .+|..+.++++ |++|++++|.++ .+|..+..++  +
T Consensus       328 ~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~  403 (636)
T 4eco_A          328 KMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSV  403 (636)
T ss_dssp             TCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSC
T ss_pred             cCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCc
Confidence            66666666666666666666  2345556666666666555 44444555555 666666666655 4555554433  5


Q ss_pred             CcEEEccCCcCCCCCCcccc-------CCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCcccc
Q 001313          686 LQGLFLSNNSLSGKIPRWLG-------NLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIE  758 (1102)
Q Consensus       686 L~~L~l~~n~l~~~~p~~~~-------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~  758 (1102)
                      |++|++++|++++.+|..+.       .+++|+.|++++|++++..+..+..+++|+.|++++|+++ .+|....     
T Consensus       404 L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~-----  477 (636)
T 4eco_A          404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSL-----  477 (636)
T ss_dssp             EEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSS-----
T ss_pred             cCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHh-----
Confidence            66666666666666665555       4555666666666555333333444555555555555554 2222110     


Q ss_pred             EEEccCcccccccCcccccCccCccEEEccCccCcccCCcccc--CCCCCCEEEccCccccccCchhhcCCCCCCEEECc
Q 001313          759 QVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVD--GLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLS  836 (1102)
Q Consensus       759 ~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls  836 (1102)
                               . ..+. .+.++++|++|++++|+++ .+|..+.  .+++|+.|+|++|++++ +|..+..+++|+.|+|+
T Consensus       478 ---------~-~~~~-~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls  544 (636)
T 4eco_A          478 ---------K-DENE-NFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIR  544 (636)
T ss_dssp             ---------E-ETTE-ECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECC
T ss_pred             ---------c-cccc-cccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECC
Confidence                     0 0000 1223346666666666666 4555554  66666666666666665 56666666666666666


Q ss_pred             CccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCC
Q 001313          837 NNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNR  916 (1102)
Q Consensus       837 ~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~  916 (1102)
                      +|+                                                                       ++++|+
T Consensus       545 ~N~-----------------------------------------------------------------------~ls~N~  553 (636)
T 4eco_A          545 NQR-----------------------------------------------------------------------DAQGNR  553 (636)
T ss_dssp             SCB-----------------------------------------------------------------------CTTCCB
T ss_pred             CCc-----------------------------------------------------------------------ccccCc
Confidence            553                                                                       124566


Q ss_pred             CCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCc
Q 001313          917 LIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS  966 (1102)
Q Consensus       917 l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  966 (1102)
                      +.+.+|..++.+++|++|+|++|++ +.+|..+.  ++|+.|||++|++.
T Consensus       554 l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          554 TLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI  600 (636)
T ss_dssp             CCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred             ccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence            6667777777777777777777777 46666655  56777777777665

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=8.4e-47  Score=465.32  Aligned_cols=509  Identities=18%  Similarity=0.234  Sum_probs=266.1

Q ss_pred             cccccHHHHHHHHhhhhhccCCCCCCCCCCCCCC--CCCC--cCc------------CceEecCCCCcEEEEEcCCCCCC
Q 001313           24 SEGCLNHERFALLQLKLFFIDPYNYLLDWVDDEG--ATDC--CQW------------ERVSCNNTMGRVVVLDLSQTHRG   87 (1102)
Q Consensus        24 ~~~c~~~~~~all~~k~~~~~~~~~l~~w~~~~~--~~~c--c~w------------~gv~c~~~~~~v~~L~L~~~~~~   87 (1102)
                      ...+..+|++||++||+++.+|     +|+..++  ..+|  |.|            .||+|+. .|||++|+|+++.+.
T Consensus       263 ~~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~  336 (876)
T 4ecn_A          263 ETAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAK  336 (876)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCE
T ss_pred             ccccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCC
Confidence            3456789999999999999877     7965210  1355  999            9999996 799999999999887


Q ss_pred             cccccccccCCCCCCCCEEeC-CCCCCCCcccchhhh-------------------------------------------
Q 001313           88 EYWYLNASLFTPFQQLESLDL-RDNDIAGCVENEGLE-------------------------------------------  123 (1102)
Q Consensus        88 ~~~~~~~~~~~~~~~L~~L~L-s~~~~~~~~~~~~~~-------------------------------------------  123 (1102)
                      |.+   +..|+.+++|++||| ++|.+.|..+.....                                           
T Consensus       337 G~i---p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~  413 (876)
T 4ecn_A          337 GRV---PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE  413 (876)
T ss_dssp             EEE---CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTT
T ss_pred             CcC---chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcc
Confidence            753   467899999999999 888766542210000                                           


Q ss_pred             --hh--cCCCCCcEEeCCC--CcCCcchhHhhhcCCCcCEEEcCCCcccCC-CChhhhccCCCCcEEEcCCCcCCccccc
Q 001313          124 --RL--SRLSNLKMLNLVG--NLFNNSILSSLARLSSLTSLDLSANRLKGS-IDIKELDSLRDLEKLNIGRNMIDKFVVS  196 (1102)
Q Consensus       124 --~l--~~l~~L~~L~Ls~--n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~l~~l~~L~~L~Ls~n~~~~~~~~  196 (1102)
                        .+  .....++.+.+..  |.+++ +|..++++++|++|+|++|++++. ++...         +..+.+...+..  
T Consensus       414 ~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~---------~~~s~n~~~g~i--  481 (876)
T 4ecn_A          414 MKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDW---------EDANSDYAKQYE--  481 (876)
T ss_dssp             SCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSC---------SCTTSHHHHHHT--
T ss_pred             ccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccc---------cccccccccccC--
Confidence              00  0111222222222  44444 555555555555555555555541 00000         000000000011  


Q ss_pred             CCccccC--CCCCcCEEEcCCCcCChhhhHhhhccCCCcEEEccCCc-CCC-CCchhhcc-------CCCCCcEEecccC
Q 001313          197 KGPKRLS--RLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNR-LEG-SIDVKEFD-------SLSNLEELDMSYN  265 (1102)
Q Consensus       197 ~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~~l~-------~l~~L~~L~L~~n  265 (1102)
                        |..++  ++++|++|+|++|.+.+.+|..++++++|++|++++|. +++ .+|. .++       .+++|++|++++|
T Consensus       482 --P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~-~i~~L~~~~~~l~~L~~L~Ls~N  558 (876)
T 4ecn_A          482 --NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKA-DWTRLADDEDTGPKIQIFYMGYN  558 (876)
T ss_dssp             --TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHH-HHHHHHHCTTTTTTCCEEECCSS
T ss_pred             --ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchH-HHHhhhhcccccCCccEEEeeCC
Confidence              23444  55566666666655555555556666666666666655 544 3332 222       3346666666666


Q ss_pred             ccCCcchhhhhccccccceeccccccccCchhhhhhcCCCCCCCEEeCCCCCccccccccccccccccccceeecccchh
Q 001313          266 EIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARI  345 (1102)
Q Consensus       266 ~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  345 (1102)
                      .++.++.                          ...++.+++|++|++++|.+.                          
T Consensus       559 ~L~~ip~--------------------------~~~l~~L~~L~~L~Ls~N~l~--------------------------  586 (876)
T 4ecn_A          559 NLEEFPA--------------------------SASLQKMVKLGLLDCVHNKVR--------------------------  586 (876)
T ss_dssp             CCCBCCC--------------------------HHHHTTCTTCCEEECTTSCCC--------------------------
T ss_pred             cCCccCC--------------------------hhhhhcCCCCCEEECCCCCcc--------------------------
Confidence            6542110                          002333444444444444332                          


Q ss_pred             hhchhhHHHhhccCCCCcEEecccCcCcCCcccccCCccCCCCccEEEcCCCcCCCCcchhccCCCC-CcEEEcCCCccc
Q 001313          346 ALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTS-LRILDVSSNQLI  424 (1102)
Q Consensus       346 ~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~Ls~n~l~  424 (1102)
                                                   .+|    .+..+++|+.|++++|.+. .+|..+..+++ |++|++++|.+.
T Consensus       587 -----------------------------~lp----~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~  632 (876)
T 4ecn_A          587 -----------------------------HLE----AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK  632 (876)
T ss_dssp             -----------------------------BCC----CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC
T ss_pred             -----------------------------cch----hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC
Confidence                                         111    2233344444444444444 34444444444 444444444444


Q ss_pred             cccCCcccccCC--ccCeeecCCcccccccCccccccCCcceEEecCCCccchhhhccccCCCCcccceeeeeccCCCCC
Q 001313          425 GSISSSPLIHLT--SIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDG  502 (1102)
Q Consensus       425 ~~i~~~~l~~l~--~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~  502 (1102)
                       .+ |..+..++  +|+.|++++|++.+.++.                                                
T Consensus       633 -~l-p~~~~~~~~~~L~~L~Ls~N~l~g~ip~------------------------------------------------  662 (876)
T 4ecn_A          633 -YI-PNIFNAKSVYVMGSVDFSYNKIGSEGRN------------------------------------------------  662 (876)
T ss_dssp             -SC-CSCCCTTCSSCEEEEECCSSCTTTTSSS------------------------------------------------
T ss_pred             -cC-chhhhccccCCCCEEECcCCcCCCcccc------------------------------------------------
Confidence             23 22222222  244444444444322110                                                


Q ss_pred             CccCcccc--CCCcccEEEeccccCCCCCChhhhhcCCCCcEEEccCCCCcCCCcCCCCCCCCcCEEEccCCcCCCCCCc
Q 001313          503 ITFPKFLY--NQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPL  580 (1102)
Q Consensus       503 ~~~p~~l~--~~~~L~~L~ls~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~  580 (1102)
                        ++..+.  ...+|+.|++++|.+. .+|..++..+++|+.|++++|.+.                         .+|.
T Consensus       663 --l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-------------------------~ip~  714 (876)
T 4ecn_A          663 --ISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-------------------------SIPE  714 (876)
T ss_dssp             --CSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-------------------------CCCT
T ss_pred             --chhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-------------------------ccCh
Confidence              000000  1235566666666665 566666666666666666666555                         2333


Q ss_pred             hhhhc-------CCCCcEEEccCCcccccCCcccC--CCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCc
Q 001313          581 EIGDI-------LSRLTVFNISMNALDGSIPSSFG--NMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGH  651 (1102)
Q Consensus       581 ~~~~~-------l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~  651 (1102)
                      .++..       +++|+.|+|++|+++ .+|..+.  .+++|+.|+|++|++++ +|..++ .+++|+.|+|++|+    
T Consensus       715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~-~L~~L~~L~Ls~N~----  787 (876)
T 4ecn_A          715 NSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPL-NSSQLKAFGIRHQR----  787 (876)
T ss_dssp             TSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGG-GCTTCCEEECCCCB----
T ss_pred             HHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhh-cCCCCCEEECCCCC----
Confidence            22221       225666666666666 4555554  66666666666666663 565553 56666666666654    


Q ss_pred             ccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCC
Q 001313          652 MFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQL  731 (1102)
Q Consensus       652 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  731 (1102)
                                    ++++|.+.+.+|..+..+++|+.|++++|++ +.+|..+.  ++|+.|++++|++....+..++..
T Consensus       788 --------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~  850 (876)
T 4ecn_A          788 --------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPY  850 (876)
T ss_dssp             --------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHH
T ss_pred             --------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHcccc
Confidence                          3445555555666666666666666666666 45555544  466666666666654444444444


Q ss_pred             CcccEEEccCccc
Q 001313          732 RILQILDISDNNI  744 (1102)
Q Consensus       732 ~~L~~L~ls~n~l  744 (1102)
                      ..+..+.+.+|+.
T Consensus       851 ~~~~~~~L~~n~~  863 (876)
T 4ecn_A          851 IEAGMYVLLYDKT  863 (876)
T ss_dssp             HHTTCCEEECCTT
T ss_pred             ccchheeecCCCc
Confidence            4444444554443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.4e-45  Score=444.68  Aligned_cols=397  Identities=20%  Similarity=0.246  Sum_probs=315.0

Q ss_pred             cCCCCcEEEccCCCCcCC-CcCCCCCCCCcCEEEccCCcCCCCCCchhhhcCCCC----cEEEccCCcccccCCcccCCC
Q 001313          536 NNTKLRQLSLVNDSLVGP-FRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRL----TVFNISMNALDGSIPSSFGNM  610 (1102)
Q Consensus       536 ~~~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L----~~L~Ls~n~l~~~~~~~~~~l  610 (1102)
                      ++++|++|++++|.+.+. .+..+..+++|++|++++|.+++..|..+.. +++|    +.+++++|.+++..|..|...
T Consensus       122 ~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~~~~~L~l~~n~l~~~~~~~~~~~  200 (570)
T 2z63_A          122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV-LHQMPLLNLSLDLSLNPMNFIQPGAFKEI  200 (570)
T ss_dssp             TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHH-HHTCTTCCCEEECTTCCCCEECTTTTTTC
T ss_pred             ccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccc-hhccchhhhhcccCCCCceecCHHHhccC
Confidence            444455555555544442 2444556667777777777776444444443 5666    788888888888777777766


Q ss_pred             CCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCC------cccccccCCC--ccCeeeccCc-cCcccCCCCcC
Q 001313          611 NFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEG------HMFSRNFNLT--NLIWLQLEGN-HFVGEIPQSLS  681 (1102)
Q Consensus       611 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~--~L~~L~L~~n-~l~~~~~~~~~  681 (1102)
                       +|+.|++++|............+++.++.+.+....+..      .....+..++  .++.++++++ .+.+..|..+.
T Consensus       201 -~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~  279 (570)
T 2z63_A          201 -RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN  279 (570)
T ss_dssp             -EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTG
T ss_pred             -cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhc
Confidence             788888888755433223334567777776665443321      2222233333  3567777777 67778888899


Q ss_pred             CCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEE
Q 001313          682 KCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVH  761 (1102)
Q Consensus       682 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~  761 (1102)
                      .+++|++|++++|.+. .+|.++..+ +|+.|++++|.+. .+|.  ..+++|+.|++++|.+.+..+. ..+++|+.|+
T Consensus       280 ~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~  353 (570)
T 2z63_A          280 CLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLD  353 (570)
T ss_dssp             GGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEE
T ss_pred             CcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc-ccCCCCCEEe
Confidence            9999999999999998 688888888 9999999999988 5554  4678999999999998877766 6788999999


Q ss_pred             ccCccccccc--CcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCc-hhhcCCCCCCEEECcCc
Q 001313          762 LSKNMLHGQL--KEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVP-IQLCRLNQLQLLDLSNN  838 (1102)
Q Consensus       762 l~~n~l~~~i--~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N  838 (1102)
                      +++|++.+..  |. .+.++++|++|++++|.+++..+. +..+++|++|++++|++++..| ..+..+++|++|++++|
T Consensus       354 l~~n~l~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n  431 (570)
T 2z63_A          354 LSRNGLSFKGCCSQ-SDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT  431 (570)
T ss_dssp             CCSSCCBEEEEEEH-HHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTS
T ss_pred             CcCCccCccccccc-cccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCC
Confidence            9999988643  44 788999999999999999976555 9999999999999999998776 57899999999999999


Q ss_pred             cCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCC
Q 001313          839 NLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLI  918 (1102)
Q Consensus       839 ~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~  918 (1102)
                      .+++..|..|..++                                                     .|+.|+|++|+++
T Consensus       432 ~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~l~~n~l~  458 (570)
T 2z63_A          432 HTRVAFNGIFNGLS-----------------------------------------------------SLEVLKMAGNSFQ  458 (570)
T ss_dssp             CCEECCTTTTTTCT-----------------------------------------------------TCCEEECTTCEEG
T ss_pred             cccccchhhhhcCC-----------------------------------------------------cCcEEECcCCcCc
Confidence            99988888776654                                                     6899999999998


Q ss_pred             -CCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCCc
Q 001313          919 -GHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPE  995 (1102)
Q Consensus       919 -~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~  995 (1102)
                       +.+|..+..+++|++|+|++|++++..|..|+++++|+.|++++|++++.+|..+..+++|+.+++++|+++|.+|.
T Consensus       459 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             cccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence             67999999999999999999999999999999999999999999999999888999999999999999999999987

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.6e-45  Score=448.83  Aligned_cols=356  Identities=21%  Similarity=0.289  Sum_probs=262.5

Q ss_pred             CCcCCCCCCchhhhcCCCCcEEEccCCccccc-----------------CCcccC--CCCCCcEEEccCcccccccchhH
Q 001313          571 KNNFQGHIPLEIGDILSRLTVFNISMNALDGS-----------------IPSSFG--NMNFLQFLDLSNNQLTGEIPEHL  631 (1102)
Q Consensus       571 ~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~-----------------~~~~~~--~l~~L~~L~Ls~n~l~~~ip~~~  631 (1102)
                      .|+++| +|..++. +++|++|++++|.+++.                 +|..++  ++++|++|++++|++.|.+|..+
T Consensus       192 ~n~l~~-ip~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l  269 (636)
T 4eco_A          192 SNNITF-VSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL  269 (636)
T ss_dssp             SCEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT
T ss_pred             cCCCcc-CCHHHhc-ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH
Confidence            456665 6666655 67777777777777764                 677766  77777777777777777777555


Q ss_pred             hhcCCCCcEEEccccc-cCC-cccccccCC------CccCeeeccCccCcccCCC--CcCCCCCCcEEEccCCcCCCCCC
Q 001313          632 AMGCVSLRSLALSNNN-LEG-HMFSRNFNL------TNLIWLQLEGNHFVGEIPQ--SLSKCSSLQGLFLSNNSLSGKIP  701 (1102)
Q Consensus       632 ~~~l~~L~~L~L~~n~-l~~-~~~~~~~~l------~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~p  701 (1102)
                       ..+++|++|++++|+ +++ .+|..+..+      ++|++|++++|.++ .+|.  .+..+++|++|++++|+++|.+|
T Consensus       270 -~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip  347 (636)
T 4eco_A          270 -KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP  347 (636)
T ss_dssp             -TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC
T ss_pred             -hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh
Confidence             366777777777776 666 666655554      77777777777777 6666  77777777777777777777777


Q ss_pred             ccccCCCCccEEECCCCcccCCCcccccCCCc-ccEEEccCcccccCCCCCCC---CccccEEEccCcccccccCccccc
Q 001313          702 RWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRI-LQILDISDNNISGSLPSCYD---FVCIEQVHLSKNMLHGQLKEGTFF  777 (1102)
Q Consensus       702 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~ls~n~l~~~~p~~~~---~~~L~~L~l~~n~l~~~i~~~~~~  777 (1102)
                       .++.+++|+.|++++|+++ .+|..+..+++ |+.|++++|.++ .+|..+.   +++|+.|++++|++.+.+|. .|.
T Consensus       348 -~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~  423 (636)
T 4eco_A          348 -AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGK-NFD  423 (636)
T ss_dssp             -CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTC-SSC
T ss_pred             -hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchh-hhc
Confidence             7777777777777777777 66667777777 777777777777 5665543   23677777777777776666 565


Q ss_pred             -------CccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchh-hcCCC-------CCCEEECcCccCCC
Q 001313          778 -------NCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQ-LCRLN-------QLQLLDLSNNNLHG  842 (1102)
Q Consensus       778 -------~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~l~-------~L~~L~Ls~N~l~~  842 (1102)
                             .+++|++|++++|++++..+..+..+++|++|+|++|+++ .+|.. +....       +|+.|+|++|+++ 
T Consensus       424 ~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-  501 (636)
T 4eco_A          424 PLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-  501 (636)
T ss_dssp             TTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-
T ss_pred             ccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-
Confidence                   6678888888888888544445566888888888888888 55543 33232       8888888888888 


Q ss_pred             CCCcccc--cccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCC
Q 001313          843 HIPSCFD--NTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGH  920 (1102)
Q Consensus       843 ~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~  920 (1102)
                      .+|..+.  .++                                                     .|+.|+|++|++++ 
T Consensus       502 ~lp~~~~~~~l~-----------------------------------------------------~L~~L~Ls~N~l~~-  527 (636)
T 4eco_A          502 KLSDDFRATTLP-----------------------------------------------------YLVGIDLSYNSFSK-  527 (636)
T ss_dssp             BCCGGGSTTTCT-----------------------------------------------------TCCEEECCSSCCSS-
T ss_pred             ccChhhhhccCC-----------------------------------------------------CcCEEECCCCCCCC-
Confidence            5665543  332                                                     67888888888887 


Q ss_pred             CcccccCCCcCCEEEC------CCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccC
Q 001313          921 IPPQIGNLTKIQTLNL------SHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKI  993 (1102)
Q Consensus       921 ip~~~~~l~~L~~L~L------s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~  993 (1102)
                      +|..+..+++|++|+|      ++|++.+.+|..|+++++|+.|||++|++ +.+|..+.  ++|++||+++|++...-
T Consensus       528 ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          528 FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISID  603 (636)
T ss_dssp             CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred             cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcccc
Confidence            8888888888888888      56788889999999999999999999999 57888766  78999999999876533

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=7.8e-44  Score=432.70  Aligned_cols=441  Identities=22%  Similarity=0.218  Sum_probs=312.4

Q ss_pred             cccEEEeccccCCCCCChhhhhcCCCCcEEEccCCCCcCCCcCCCCCCCCcCEEEccCCcCCCCCCchhhhcCCCCcEEE
Q 001313          514 DLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFN  593 (1102)
Q Consensus       514 ~L~~L~ls~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~  593 (1102)
                      +++.|++++|.+.+..+.. +.++++|++|++++|.+.+..+..+..+++|++|++++|.+++..|..+. .+++|++|+
T Consensus        29 ~l~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~  106 (570)
T 2z63_A           29 STKNLDLSFNPLRHLGSYS-FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLV  106 (570)
T ss_dssp             SCCEEECCSCCCCEECTTT-TTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT-TCTTCCEEE
T ss_pred             cccEEEccCCccCccChhH-hhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhc-Ccccccccc
Confidence            4555555555554433332 33555555555555555555444555555555555555555532222222 255555555


Q ss_pred             ccCCcccccCCcccCCCCCCcEEEccCccccc-ccchhHhhcCCCCcEEEccccccCCcccccccCCCcc----Ceeecc
Q 001313          594 ISMNALDGSIPSSFGNMNFLQFLDLSNNQLTG-EIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNL----IWLQLE  668 (1102)
Q Consensus       594 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L----~~L~L~  668 (1102)
                      +++|++++..+..|+++++|++|++++|++++ .+|..+ .++++|++|++++|++++..+..+..+++|    +.|+++
T Consensus       107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~  185 (570)
T 2z63_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF-SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS  185 (570)
T ss_dssp             CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGG-GGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred             ccccccccCCCccccccccccEEecCCCccceecChhhh-cccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence            55555554444445555555555555555553 234433 345555555555555555555555555555    555555


Q ss_pred             CccCcccCCCCcCCCCCCcEEEccCC------------------------------------------------------
Q 001313          669 GNHFVGEIPQSLSKCSSLQGLFLSNN------------------------------------------------------  694 (1102)
Q Consensus       669 ~n~l~~~~~~~~~~l~~L~~L~l~~n------------------------------------------------------  694 (1102)
                      +|.+.+..|..+..+ +|+.|++++|                                                      
T Consensus       186 ~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l  264 (570)
T 2z63_A          186 LNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL  264 (570)
T ss_dssp             TCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEE
T ss_pred             CCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhh
Confidence            555555544444433 4555555444                                                      


Q ss_pred             ----cCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccc
Q 001313          695 ----SLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQ  770 (1102)
Q Consensus       695 ----~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~  770 (1102)
                          .+.+..|..+..+++|+.|++++|.++ .+|..+..+ +|+.|++++|.+. .+|. ..+++|+.|++++|.+.+.
T Consensus       265 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~-~~l~~L~~L~l~~n~~~~~  340 (570)
T 2z63_A          265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT-LKLKSLKRLTFTSNKGGNA  340 (570)
T ss_dssp             EETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB-CBCSSCCEEEEESCBSCCB
T ss_pred             hcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc-ccccccCEEeCcCCccccc
Confidence                455566777778888888888888887 467777777 8888888888887 4554 4667888888888887765


Q ss_pred             cCcccccCccCccEEEccCccCcccC--CccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCC-cc
Q 001313          771 LKEGTFFNCLTLMILDLSYNHLNGNI--PDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIP-SC  847 (1102)
Q Consensus       771 i~~~~~~~~~~L~~L~Ls~n~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~  847 (1102)
                      ++.   ..+++|++|++++|++++..  |..+.++++|++|++++|++++..+. +..+++|+.|++++|.+++..| ..
T Consensus       341 ~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~  416 (570)
T 2z63_A          341 FSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSV  416 (570)
T ss_dssp             CCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCT
T ss_pred             ccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhh
Confidence            544   56788888888888887654  66778888888888888888865444 8888888888888888877655 33


Q ss_pred             cccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccC
Q 001313          848 FDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGN  927 (1102)
Q Consensus       848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~  927 (1102)
                      +.+++                                                     .|+.|++++|.+++..|..|..
T Consensus       417 ~~~l~-----------------------------------------------------~L~~L~l~~n~l~~~~~~~~~~  443 (570)
T 2z63_A          417 FLSLR-----------------------------------------------------NLIYLDISHTHTRVAFNGIFNG  443 (570)
T ss_dssp             TTTCT-----------------------------------------------------TCCEEECTTSCCEECCTTTTTT
T ss_pred             hhcCC-----------------------------------------------------CCCEEeCcCCcccccchhhhhc
Confidence            43332                                                     6899999999999999999999


Q ss_pred             CCcCCEEECCCCCCC-CCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCCccccccCCCCcc
Q 001313          928 LTKIQTLNLSHNNLA-GPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNES 1006 (1102)
Q Consensus       928 l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~ 1006 (1102)
                      +++|++|+|++|.++ +.+|..|+.+++|+.|||++|++++..|..+..+++|++|++++|++++..|..+..+..+..+
T Consensus       444 l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  523 (570)
T 2z63_A          444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKI  523 (570)
T ss_dssp             CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEE
Confidence            999999999999998 6899999999999999999999999999999999999999999999999888777888899999


Q ss_pred             ccCCCCCCCCCCC
Q 001313         1007 SYEGNPFLCGPPL 1019 (1102)
Q Consensus      1007 ~~~gN~~lC~~~~ 1019 (1102)
                      ++.+||+.|+++.
T Consensus       524 ~l~~N~~~~~~~~  536 (570)
T 2z63_A          524 WLHTNPWDCSCPR  536 (570)
T ss_dssp             ECCSSCBCCCTTT
T ss_pred             EecCCcccCCCcc
Confidence            9999999998764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.2e-43  Score=428.55  Aligned_cols=465  Identities=20%  Similarity=0.207  Sum_probs=351.4

Q ss_pred             CCccEEEcCCCcCCCCcchhccCCCCCcEEEcCCCccccccCCcccccCCccCeeecCCcccccccCccccccCCcceEE
Q 001313          387 VHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIF  466 (1102)
Q Consensus       387 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L  466 (1102)
                      ++|++|++++|.+++..|..+.++++|++|++++|++.+ +++..+.++++|++|++++|.++                 
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~-----------------   87 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT-IEGDAFYSLGSLEHLDLSDNHLS-----------------   87 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCC-----------------
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc-cChhhccccccCCEEECCCCccC-----------------
Confidence            466677777776666556666666666666666666653 22445555555555555555443                 


Q ss_pred             ecCCCccchhhhccccCCCCcccceeeeeccCCCCCCccCccccCCCcccEEEeccccCCCCCChhhhhcCCCCcEEEcc
Q 001313          467 DAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLV  546 (1102)
Q Consensus       467 ~l~~n~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~p~~l~~~~~L~~L~ls~~~~~~~~p~~~~~~~~~L~~L~L~  546 (1102)
                                                                                  +..|. .+..+++|++|+++
T Consensus        88 ------------------------------------------------------------~~~~~-~~~~l~~L~~L~Ls  106 (549)
T 2z81_A           88 ------------------------------------------------------------SLSSS-WFGPLSSLKYLNLM  106 (549)
T ss_dssp             ------------------------------------------------------------SCCHH-HHTTCTTCCEEECT
T ss_pred             ------------------------------------------------------------ccCHH-HhccCCCCcEEECC
Confidence                                                                        22222 23456666666666


Q ss_pred             CCCCcCC-CcCCCCCCCCcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEEccCccccc
Q 001313          547 NDSLVGP-FRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTG  625 (1102)
Q Consensus       547 ~n~l~~~-~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  625 (1102)
                      +|.+++. .+..+..+++|++|++++|.+.+.+|...+..+++|++|++++|.+++..|..++.+++|++|+++.|.+. 
T Consensus       107 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-  185 (549)
T 2z81_A          107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-  185 (549)
T ss_dssp             TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-
T ss_pred             CCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-
Confidence            6666542 23456677888888888888656777554555899999999999999999999999999999999999987 


Q ss_pred             ccchhHhhcCCCCcEEEccccccCCcc---cccccCCCccCeeeccCccCcccCC----CCcCCCCCCcEEEccCCcCCC
Q 001313          626 EIPEHLAMGCVSLRSLALSNNNLEGHM---FSRNFNLTNLIWLQLEGNHFVGEIP----QSLSKCSSLQGLFLSNNSLSG  698 (1102)
Q Consensus       626 ~ip~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~  698 (1102)
                      .+|...+..+++|++|++++|++++..   ......+++|+.|++++|.+++..+    ..+..+++|+.+++++|.+.+
T Consensus       186 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~  265 (549)
T 2z81_A          186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG  265 (549)
T ss_dssp             THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEEC
T ss_pred             ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccc
Confidence            788887778899999999999998753   1223457889999999998876443    344667889999999998775


Q ss_pred             CC------CccccCCCCccEEECCCCcccCC-----CcccccCCCcccEEEccCcccccCCCCCC--CCccccEEEccCc
Q 001313          699 KI------PRWLGNLTVLRHIIMPKNHIEGP-----IPLEFCQLRILQILDISDNNISGSLPSCY--DFVCIEQVHLSKN  765 (1102)
Q Consensus       699 ~~------p~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~ls~n~l~~~~p~~~--~~~~L~~L~l~~n  765 (1102)
                      ..      ...+..+++|+.|++.++.+...     ++..+...++|+.|++++|.+. .+|..+  .+++|+.|++++|
T Consensus       266 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N  344 (549)
T 2z81_A          266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSEN  344 (549)
T ss_dssp             CSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSS
T ss_pred             cccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCC
Confidence            31      13456678889999888876532     1222344578999999999886 556544  4788999999999


Q ss_pred             ccccccCc--ccccCccCccEEEccCccCcccCC--ccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCC
Q 001313          766 MLHGQLKE--GTFFNCLTLMILDLSYNHLNGNIP--DRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH  841 (1102)
Q Consensus       766 ~l~~~i~~--~~~~~~~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  841 (1102)
                      ++.+.+|.  ..+..+++|++|++++|++++..+  ..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++
T Consensus       345 ~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~  423 (549)
T 2z81_A          345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR  423 (549)
T ss_dssp             CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS
T ss_pred             ccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc
Confidence            99887653  246788999999999999986543  45888999999999999998 68888888999999999999987


Q ss_pred             CCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCC
Q 001313          842 GHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHI  921 (1102)
Q Consensus       842 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~i  921 (1102)
                      +. |.+                                                       +++.|+.|||++|++++.+
T Consensus       424 ~l-~~~-------------------------------------------------------~~~~L~~L~Ls~N~l~~~~  447 (549)
T 2z81_A          424 VV-KTC-------------------------------------------------------IPQTLEVLDVSNNNLDSFS  447 (549)
T ss_dssp             CC-CTT-------------------------------------------------------SCTTCSEEECCSSCCSCCC
T ss_pred             cc-cch-------------------------------------------------------hcCCceEEECCCCChhhhc
Confidence            32 221                                                       1236889999999998753


Q ss_pred             cccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCCc
Q 001313          922 PPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPE  995 (1102)
Q Consensus       922 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~  995 (1102)
                          ..+++|++|+|++|+|+ .+|. .+.+++|+.|||++|++++.+|..+..+++|++|++++|++.|.+|.
T Consensus       448 ----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  515 (549)
T 2z81_A          448 ----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  515 (549)
T ss_dssp             ----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred             ----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence                57889999999999999 6676 56789999999999999999898899999999999999999998885

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2.4e-43  Score=425.98  Aligned_cols=472  Identities=20%  Similarity=0.219  Sum_probs=331.6

Q ss_pred             CCCCcEEecccCcCcCCcccccCCccCCCCccEEEcCCCcCCCCcchhccCCCCCcEEEcCCCccccccCCcccccCCcc
Q 001313          359 MPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSI  438 (1102)
Q Consensus       359 l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L  438 (1102)
                      .++|++|++++|.+++..+.   .+..+++|++|++++|.+.+..|..|.++++|++|++++|.+.+.. +..+.++++|
T Consensus        25 ~~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L  100 (549)
T 2z81_A           25 TAAMKSLDLSFNKITYIGHG---DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS-SSWFGPLSSL  100 (549)
T ss_dssp             CTTCCEEECCSSCCCEECSS---TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCC-HHHHTTCTTC
T ss_pred             CCCccEEECcCCccCccChh---hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccC-HHHhccCCCC
Confidence            46788888888888766555   6788889999999999888877788889999999999999887543 5667888888


Q ss_pred             CeeecCCcccccccCccccccCCcceEEecCCCccchhhhccccCCCCcccceeeeeccCCCCCCccCccccCCCcccEE
Q 001313          439 EDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYV  518 (1102)
Q Consensus       439 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~p~~l~~~~~L~~L  518 (1102)
                      ++|++++|.+++..                                                    .|..+..+++|+.|
T Consensus       101 ~~L~Ls~n~l~~~~----------------------------------------------------~~~~~~~l~~L~~L  128 (549)
T 2z81_A          101 KYLNLMGNPYQTLG----------------------------------------------------VTSLFPNLTNLQTL  128 (549)
T ss_dssp             CEEECTTCCCSSSC----------------------------------------------------SSCSCTTCTTCCEE
T ss_pred             cEEECCCCcccccc----------------------------------------------------hhhhhhccCCccEE
Confidence            88888888766311                                                    12223344555666


Q ss_pred             EeccccCCCCCChhhhhcCCCCcEEEccCCCCcCCCcCCCCCCCCcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCc
Q 001313          519 RLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNA  598 (1102)
Q Consensus       519 ~ls~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~  598 (1102)
                      ++++|...+.+|...+..+++|++|++++|.+.+..+..+..+++|+.|+++.|.+. .+|..++..+++|++|++++|+
T Consensus       129 ~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~  207 (549)
T 2z81_A          129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTN  207 (549)
T ss_dssp             EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCB
T ss_pred             ECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCc
Confidence            666665545555444567788888888888888777777888888999999988876 6676666668899999999999


Q ss_pred             ccccC--C-cccCCCCCCcEEEccCcccccccchhHh---hcCCCCcEEEccccccCCccc------ccccCCCccCeee
Q 001313          599 LDGSI--P-SSFGNMNFLQFLDLSNNQLTGEIPEHLA---MGCVSLRSLALSNNNLEGHMF------SRNFNLTNLIWLQ  666 (1102)
Q Consensus       599 l~~~~--~-~~~~~l~~L~~L~Ls~n~l~~~ip~~~~---~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~  666 (1102)
                      +++..  | .....+++|+.|++++|++++..+..+.   ..+++|+.+++++|.+.+...      ..+..+++|+.|+
T Consensus       208 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~  287 (549)
T 2z81_A          208 LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVT  287 (549)
T ss_dssp             CTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEE
T ss_pred             cccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccccc
Confidence            88642  2 2334678899999999988865554432   345677888888877655321      1223444555555


Q ss_pred             ccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccc-cCCCcccEEEccCcccc
Q 001313          667 LEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEF-CQLRILQILDISDNNIS  745 (1102)
Q Consensus       667 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~ls~n~l~  745 (1102)
                      +.++.+....  .+.                 .++..+...++|+.|++++|.++ .+|..+ ..+++|++|++++|+++
T Consensus       288 l~~~~i~~~~--~~~-----------------~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~  347 (549)
T 2z81_A          288 IRRLHIPQFY--LFY-----------------DLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMV  347 (549)
T ss_dssp             EESCBCSCGG--GSC-----------------CCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCC
T ss_pred             ccccccchhh--hcc-----------------cchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccc
Confidence            5554433210  000                 01111122334555555555544 333332 34555555555555555


Q ss_pred             cCCCC----CCCCccccEEEccCcccccccC-cccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccC
Q 001313          746 GSLPS----CYDFVCIEQVHLSKNMLHGQLK-EGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEV  820 (1102)
Q Consensus       746 ~~~p~----~~~~~~L~~L~l~~n~l~~~i~-~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~  820 (1102)
                      +.+|.    ...+++|+.|++++|++++..+ ...+..+++|++|++++|+++ .+|..+..+++|++|++++|+++ .+
T Consensus       348 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l  425 (549)
T 2z81_A          348 EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VV  425 (549)
T ss_dssp             HHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CC
T ss_pred             cccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cc
Confidence            43321    1234555555555555544221 125888999999999999999 68889999999999999999998 44


Q ss_pred             chhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeecc
Q 001313          821 PIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQ  900 (1102)
Q Consensus       821 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  900 (1102)
                      |..+  .++|++||+++|++++.++    .+                                                 
T Consensus       426 ~~~~--~~~L~~L~Ls~N~l~~~~~----~l-------------------------------------------------  450 (549)
T 2z81_A          426 KTCI--PQTLEVLDVSNNNLDSFSL----FL-------------------------------------------------  450 (549)
T ss_dssp             CTTS--CTTCSEEECCSSCCSCCCC----CC-------------------------------------------------
T ss_pred             cchh--cCCceEEECCCCChhhhcc----cC-------------------------------------------------
Confidence            5443  3689999999999986531    11                                                 


Q ss_pred             CCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCc
Q 001313          901 GRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIP  970 (1102)
Q Consensus       901 ~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  970 (1102)
                          +.|+.|+|++|+++ .+|+ ...+++|++|||++|++++.+|..|+.+++|+.||+++|++++..|
T Consensus       451 ----~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          451 ----PRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             ----TTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             ----ChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence                26899999999998 6776 5789999999999999999999999999999999999999998887

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.5e-43  Score=434.49  Aligned_cols=356  Identities=19%  Similarity=0.221  Sum_probs=198.4

Q ss_pred             CCCchhh-hcCCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcc-ccc-ccchhHhh------cCCCCcEEEccccc
Q 001313          577 HIPLEIG-DILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQ-LTG-EIPEHLAM------GCVSLRSLALSNNN  647 (1102)
Q Consensus       577 ~ip~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~-~ip~~~~~------~l~~L~~L~L~~n~  647 (1102)
                      .+|..++ ..+++|++|+|++|++.+.+|..|+++++|++|++++|+ ++| .+|..+..      .+++|++|++++|+
T Consensus       480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~  559 (876)
T 4ecn_A          480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN  559 (876)
T ss_dssp             HTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred             cCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence            3555553 125666666666666666666666666666666666665 655 55554421      12255555555555


Q ss_pred             cCCcccc--cccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCC-ccEEECCCCcccCCC
Q 001313          648 LEGHMFS--RNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTV-LRHIIMPKNHIEGPI  724 (1102)
Q Consensus       648 l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~-L~~L~l~~n~l~~~~  724 (1102)
                      ++ .+|.  .+.++++|++|++++|.++ .+| .+..+++|+.|++++|+++ .+|..+..+++ |+.|++++|.++ .+
T Consensus       560 L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~l  634 (876)
T 4ecn_A          560 LE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YI  634 (876)
T ss_dssp             CC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SC
T ss_pred             CC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cC
Confidence            55 3444  4555555555555555555 444 5555555555555555555 45555555555 555555555554 44


Q ss_pred             cccccCCCc--ccEEEccCcccccCCCCCCCCccccEEEccCcccccccCccccc--CccCccEEEccCccCcccCCcc-
Q 001313          725 PLEFCQLRI--LQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFF--NCLTLMILDLSYNHLNGNIPDR-  799 (1102)
Q Consensus       725 ~~~~~~l~~--L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~--~~~~L~~L~Ls~n~l~~~~p~~-  799 (1102)
                      |..+..++.  |+.|++++|++.+.+|...                    . .+.  .+++|+.|++++|+++ .+|.. 
T Consensus       635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~--------------------~-~l~~~~~~~L~~L~Ls~N~L~-~lp~~~  692 (876)
T 4ecn_A          635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNIS--------------------C-SMDDYKGINASTVTLSYNEIQ-KFPTEL  692 (876)
T ss_dssp             CSCCCTTCSSCEEEEECCSSCTTTTSSSCS--------------------S-CTTTCCCCCEEEEECCSSCCC-SCCHHH
T ss_pred             chhhhccccCCCCEEECcCCcCCCccccch--------------------h-hhccccCCCcCEEEccCCcCC-ccCHHH
Confidence            444444332  5555555555554443221                    0 111  2335666666666665 23333 


Q ss_pred             ccCCCCCCEEEccCccccccCchhhcC--------CCCCCEEECcCccCCCCCCcccc--cccccccccCCCCCCCccch
Q 001313          800 VDGLSQLSYLILAHNNLEGEVPIQLCR--------LNQLQLLDLSNNNLHGHIPSCFD--NTTLHERYNNGSSLQPFETS  869 (1102)
Q Consensus       800 ~~~l~~L~~L~L~~N~l~~~~p~~~~~--------l~~L~~L~Ls~N~l~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~  869 (1102)
                      +..+++|+.|+|++|+++ .+|..+..        +++|+.|+|++|+++ .+|..+.  .+.                 
T Consensus       693 ~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~-----------------  753 (876)
T 4ecn_A          693 FATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLP-----------------  753 (876)
T ss_dssp             HHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCT-----------------
T ss_pred             HccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCC-----------------
Confidence            235566666666666665 44443322        126666666666666 4444432  221                 


Q ss_pred             hhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCC------CCCCC
Q 001313          870 FVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSH------NNLAG  943 (1102)
Q Consensus       870 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~------N~l~~  943 (1102)
                                                          .|+.|+|++|++++ +|..+..+++|+.|+|++      |++.+
T Consensus       754 ------------------------------------~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~  796 (876)
T 4ecn_A          754 ------------------------------------YLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILR  796 (876)
T ss_dssp             ------------------------------------TCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCC
T ss_pred             ------------------------------------CcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccc
Confidence                                                46666666666665 566666666666666654      77777


Q ss_pred             CCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCCccccccCCCCccccCCCCCCC--CCC
Q 001313          944 PIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLC--GPP 1018 (1102)
Q Consensus       944 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~gN~~lC--~~~ 1018 (1102)
                      .+|..|.++++|+.|+|++|++ +.+|..+.  ++|+.||+++|++....+.............+.+|+..+  ||+
T Consensus       797 ~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~  870 (876)
T 4ecn_A          797 QWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCD  870 (876)
T ss_dssp             CCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEEESCG
T ss_pred             cChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccccCCCC
Confidence            8888888888888888888888 57777655  578888888887765544433333233334445554433  554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.8e-43  Score=421.91  Aligned_cols=455  Identities=18%  Similarity=0.168  Sum_probs=294.4

Q ss_pred             cEEecccCcCcCCcccccCCccCCCCccEEEcCCCcCCCCcchhccCCCCCcEEEcCCCccccccCCcccccCCccCeee
Q 001313          363 QYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLI  442 (1102)
Q Consensus       363 ~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~  442 (1102)
                      ++|++++|.++. +|.   .+.  ++|++|++++|.+.+..|..+.++++|++|++++|++++.. +..+.++++|++|+
T Consensus         3 ~~l~ls~n~l~~-ip~---~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~   75 (520)
T 2z7x_B            3 FLVDRSKNGLIH-VPK---DLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD-ISVFKFNQELEYLD   75 (520)
T ss_dssp             CEEECTTSCCSS-CCC---SCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEE-GGGGTTCTTCCEEE
T ss_pred             ceEecCCCCccc-ccc---ccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcC-hHHhhcccCCCEEe
Confidence            467888888774 333   333  78888888888888877788888888888888888877543 66777777777777


Q ss_pred             cCCcccccccCccccccCCcceEEecCCCccchhhhccccCCCCcccceeeeeccCCCCCCccCccccCCCcccEEEecc
Q 001313          443 LSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSH  522 (1102)
Q Consensus       443 L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~p~~l~~~~~L~~L~ls~  522 (1102)
                      +++|+++. ++.                                                     .  .+++|++|++++
T Consensus        76 Ls~N~l~~-lp~-----------------------------------------------------~--~l~~L~~L~L~~   99 (520)
T 2z7x_B           76 LSHNKLVK-ISC-----------------------------------------------------H--PTVNLKHLDLSF   99 (520)
T ss_dssp             CCSSCCCE-EEC-----------------------------------------------------C--CCCCCSEEECCS
T ss_pred             cCCCceee-cCc-----------------------------------------------------c--ccCCccEEeccC
Confidence            77776651 111                                                     1  123344444444


Q ss_pred             ccCCC-CCChhhhhcCCCCcEEEccCCCCcCCCcCCCCCCCCcCEEEccCCcCCCCCCchhhhcCCCC--cEEEccCCcc
Q 001313          523 IKMNE-EFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRL--TVFNISMNAL  599 (1102)
Q Consensus       523 ~~~~~-~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L--~~L~Ls~n~l  599 (1102)
                      |.+.+ .+|.. ++++++|++|++++|.+.+   ..+..                         +++|  ++|++++|.+
T Consensus       100 N~l~~~~~p~~-~~~l~~L~~L~L~~n~l~~---~~~~~-------------------------l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B          100 NAFDALPICKE-FGNMSQLKFLGLSTTHLEK---SSVLP-------------------------IAHLNISKVLLVLGET  150 (520)
T ss_dssp             SCCSSCCCCGG-GGGCTTCCEEEEEESSCCG---GGGGG-------------------------GTTSCEEEEEEEECTT
T ss_pred             Cccccccchhh-hccCCcceEEEecCcccch---hhccc-------------------------cccceeeEEEeecccc
Confidence            44433 23332 2344444444444444332   11222                         3444  5555555555


Q ss_pred             --cccCCcccCCCC-CCcEEEccCcccccccchhHhhcCCCCcEEEccccc-------cCCcccccccCCCccCeeeccC
Q 001313          600 --DGSIPSSFGNMN-FLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNN-------LEGHMFSRNFNLTNLIWLQLEG  669 (1102)
Q Consensus       600 --~~~~~~~~~~l~-~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~L~~  669 (1102)
                        .+..|..+..+. ....+++++|++.+.++...+..+++|+.|++++|.       +.+.++ .+..+++|+.|++++
T Consensus       151 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~  229 (520)
T 2z7x_B          151 YGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNN  229 (520)
T ss_dssp             TTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEE
T ss_pred             cccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccc
Confidence              445555554443 233445555555555555444455555555555554       333333 344555555555555


Q ss_pred             ccCcccCCCCcC---CCCCCcEEEccCCcCCCCCCccc-----cCCCCccEEECCCCcccCCCc-ccccCC---CcccEE
Q 001313          670 NHFVGEIPQSLS---KCSSLQGLFLSNNSLSGKIPRWL-----GNLTVLRHIIMPKNHIEGPIP-LEFCQL---RILQIL  737 (1102)
Q Consensus       670 n~l~~~~~~~~~---~l~~L~~L~l~~n~l~~~~p~~~-----~~l~~L~~L~l~~n~l~~~~~-~~~~~l---~~L~~L  737 (1102)
                      |.+++..+..+.   ..++|++|++++|+++|.+|..+     +.+++|+.+++++|.+  .+| ..+..+   .+|+.|
T Consensus       230 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L  307 (520)
T 2z7x_B          230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNF  307 (520)
T ss_dssp             EEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEE
T ss_pred             cccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEE
Confidence            544432111110   12355666666666655555555     5555555555555554  222 222222   344555


Q ss_pred             EccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCcccc
Q 001313          738 DISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLE  817 (1102)
Q Consensus       738 ~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~  817 (1102)
                      ++++|.                       +.+. +  .+..+++|++|++++|++++.+|..++.+++|++|++++|+++
T Consensus       308 ~l~~n~-----------------------l~~~-~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  361 (520)
T 2z7x_B          308 TVSGTR-----------------------MVHM-L--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK  361 (520)
T ss_dssp             EEESSC-----------------------CCCC-C--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCC
T ss_pred             EcCCCc-----------------------cccc-c--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccC
Confidence            554444                       3321 1  1257788999999999999988999999999999999999999


Q ss_pred             c--cCchhhcCCCCCCEEECcCccCCCCCCcc-cccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccc
Q 001313          818 G--EVPIQLCRLNQLQLLDLSNNNLHGHIPSC-FDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKS  894 (1102)
Q Consensus       818 ~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  894 (1102)
                      +  .+|..+..+++|++|++++|++++.+|.. +..+                                           
T Consensus       362 ~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l-------------------------------------------  398 (520)
T 2z7x_B          362 ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT-------------------------------------------  398 (520)
T ss_dssp             BHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCC-------------------------------------------
T ss_pred             ccccchHHHhhCCCCCEEECCCCcCCcccccchhccC-------------------------------------------
Confidence            7  56788999999999999999998866643 3322                                           


Q ss_pred             eeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchh-h
Q 001313          895 ITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQ-L  973 (1102)
Q Consensus       895 ~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l  973 (1102)
                                +.|+.|++++|++++.+|..+.  ++|++|+|++|+++ .+|..+..+++|+.|||++|++++ +|.. +
T Consensus       399 ----------~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~  464 (520)
T 2z7x_B          399 ----------KSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIF  464 (520)
T ss_dssp             ----------TTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTT
T ss_pred             ----------ccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHh
Confidence                      2689999999999988888775  79999999999999 788888899999999999999995 6655 8


Q ss_pred             hcCCCCCEEEcccCcCcccCCc
Q 001313          974 VELNTLAVFSVAYNNLSGKIPE  995 (1102)
Q Consensus       974 ~~l~~L~~l~ls~N~l~~~~p~  995 (1102)
                      ..+++|++|++++|+++|.++.
T Consensus       465 ~~l~~L~~L~l~~N~~~c~c~~  486 (520)
T 2z7x_B          465 DRLTSLQKIWLHTNPWDCSCPR  486 (520)
T ss_dssp             TTCTTCCEEECCSSCBCCCHHH
T ss_pred             ccCCcccEEECcCCCCcccCCc
Confidence            8999999999999999998763

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.7e-42  Score=415.11  Aligned_cols=436  Identities=20%  Similarity=0.218  Sum_probs=371.0

Q ss_pred             CcccEEEeccccCCCCCChhhhhcCCCCcEEEccCCCCcCCCcCCCCCCCCcCEEEccCCcCCCCCCchhhhcCCCCcEE
Q 001313          513 HDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVF  592 (1102)
Q Consensus       513 ~~L~~L~ls~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L  592 (1102)
                      ++++.|++++|.+.+..|.. +.++++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..   .+++|++|
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L   95 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSD-ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH---PTVNLKHL   95 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHH-HTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC---CCCCCSEE
T ss_pred             ccccEEECCCCcccccChhh-ccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc---ccCCccEE
Confidence            78999999999998866655 568999999999999999988888999999999999999998 68876   38999999


Q ss_pred             EccCCcccc-cCCcccCCCCCCcEEEccCcccccccchhHhhcCCCC--cEEEcccccc--CCcccccccCCC-ccCeee
Q 001313          593 NISMNALDG-SIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSL--RSLALSNNNL--EGHMFSRNFNLT-NLIWLQ  666 (1102)
Q Consensus       593 ~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L--~~L~L~~n~l--~~~~~~~~~~l~-~L~~L~  666 (1102)
                      ++++|.+++ .+|..|+++++|++|++++|++++    ..+..+++|  +.|++++|.+  .+..|..+..+. +...++
T Consensus        96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~  171 (520)
T 2z7x_B           96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV  171 (520)
T ss_dssp             ECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEE
T ss_pred             eccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeecccccccccccccccccccceEEEE
Confidence            999999997 478999999999999999999985    234567888  9999999999  788888777665 455678


Q ss_pred             ccCccCcccCCC-CcCCCCCCcEEEccCCc-------CCCCCCccccCCCCccEEECCCCcccCCCccccc---CCCccc
Q 001313          667 LEGNHFVGEIPQ-SLSKCSSLQGLFLSNNS-------LSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFC---QLRILQ  735 (1102)
Q Consensus       667 L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~-------l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~---~l~~L~  735 (1102)
                      +++|.+.+.++. .+..+++|+.|++++|.       +.+.+| .++.+++|+.|++++|.+++..+..+.   ..++|+
T Consensus       172 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~  250 (520)
T 2z7x_B          172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW  250 (520)
T ss_dssp             CCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred             eccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence            899988876654 67889999999999997       666666 788999999999999988764332221   246899


Q ss_pred             EEEccCcccccCCCCCC------CCccccEEEccCcccccccCcccccCc---cCccEEEccCccCcccCCccccCCCCC
Q 001313          736 ILDISDNNISGSLPSCY------DFVCIEQVHLSKNMLHGQLKEGTFFNC---LTLMILDLSYNHLNGNIPDRVDGLSQL  806 (1102)
Q Consensus       736 ~L~ls~n~l~~~~p~~~------~~~~L~~L~l~~n~l~~~i~~~~~~~~---~~L~~L~Ls~n~l~~~~p~~~~~l~~L  806 (1102)
                      +|++++|+++|.+|..+      .++.|+.+++++|.+  .+|...+..+   .+|+.|++++|.+.+..  .+..+++|
T Consensus       251 ~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L  326 (520)
T 2z7x_B          251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPF  326 (520)
T ss_dssp             EEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCC
T ss_pred             EEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcc
Confidence            99999999999888764      578999999999999  5774355554   67999999999987532  23688999


Q ss_pred             CEEEccCccccccCchhhcCCCCCCEEECcCccCCC--CCCcccccccccccccCCCCCCCccchhhhcCCccCCccccc
Q 001313          807 SYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHG--HIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQI  884 (1102)
Q Consensus       807 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  884 (1102)
                      ++|++++|++++.+|..+..+++|++|++++|++++  .+|..+..++                                
T Consensus       327 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~--------------------------------  374 (520)
T 2z7x_B          327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK--------------------------------  374 (520)
T ss_dssp             CEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCT--------------------------------
T ss_pred             cEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCC--------------------------------
Confidence            999999999999999999999999999999999986  4455555443                                


Q ss_pred             cceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCccc-ccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCC
Q 001313          885 LESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQ-IGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYN  963 (1102)
Q Consensus       885 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  963 (1102)
                                           .|+.|||++|++++.+|.. +..+++|++|+|++|++++.+|..+.  ++|+.|||++|
T Consensus       375 ---------------------~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N  431 (520)
T 2z7x_B          375 ---------------------SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN  431 (520)
T ss_dssp             ---------------------TCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSS
T ss_pred             ---------------------CCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCC
Confidence                                 6899999999999877765 88999999999999999999888875  79999999999


Q ss_pred             cCcccCchhhhcCCCCCEEEcccCcCcccCCcc-ccccCCCCccccCCCCCCCCCCC
Q 001313          964 KLSWKIPYQLVELNTLAVFSVAYNNLSGKIPER-AAQFATFNESSYEGNPFLCGPPL 1019 (1102)
Q Consensus       964 ~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~gN~~lC~~~~ 1019 (1102)
                      +++ .+|..+..+++|++|++++|++++ +|.. +..+..+..+++.+||+.|+|+.
T Consensus       432 ~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~  486 (520)
T 2z7x_B          432 KIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR  486 (520)
T ss_dssp             CCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             ccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCCc
Confidence            999 789888899999999999999995 5553 66778888899999999998753

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.3e-40  Score=408.42  Aligned_cols=165  Identities=24%  Similarity=0.311  Sum_probs=117.8

Q ss_pred             cCccCccEEEccCccCcccCC-ccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCC-CCCCccccccccc
Q 001313          777 FNCLTLMILDLSYNHLNGNIP-DRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH-GHIPSCFDNTTLH  854 (1102)
Q Consensus       777 ~~~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~~~~~  854 (1102)
                      ..+++|+.++++.|......+ ..+..+++++.++++.|.+.+..|..+..++.|+.|++++|++. +.+|..|..++  
T Consensus       417 ~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~--  494 (635)
T 4g8a_A          417 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR--  494 (635)
T ss_dssp             TTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT--
T ss_pred             cccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcc--
Confidence            334444444444443333222 23445555555555555555555555555666666666666532 23444444333  


Q ss_pred             ccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEE
Q 001313          855 ERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTL  934 (1102)
Q Consensus       855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L  934 (1102)
                                                                         .|+.|||++|++++.+|..|+++++|++|
T Consensus       495 ---------------------------------------------------~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L  523 (635)
T 4g8a_A          495 ---------------------------------------------------NLTFLDLSQCQLEQLSPTAFNSLSSLQVL  523 (635)
T ss_dssp             ---------------------------------------------------TCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             ---------------------------------------------------ccCEEECCCCccCCcChHHHcCCCCCCEE
Confidence                                                               56777888888888888889999999999


Q ss_pred             ECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcC-CCCCEEEcccCcCcccCC
Q 001313          935 NLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVEL-NTLAVFSVAYNNLSGKIP  994 (1102)
Q Consensus       935 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~l~ls~N~l~~~~p  994 (1102)
                      +|++|+|++.+|..|+++++|++|||++|+|++.+|..+..+ ++|++|++++|+++|.+.
T Consensus       524 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~  584 (635)
T 4g8a_A          524 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  584 (635)
T ss_dssp             ECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred             ECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence            999999999999999999999999999999999999999988 689999999999999775

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=3.6e-40  Score=406.60  Aligned_cols=514  Identities=21%  Similarity=0.237  Sum_probs=372.2

Q ss_pred             CccEEEcCCCcCCCCcchhccCCCCCcEEEcCCCccccccCCcccccCCccCeeecCCcccccccCccccccCCcceEEe
Q 001313          388 HLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFD  467 (1102)
Q Consensus       388 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~  467 (1102)
                      ++++|+|++|.+++..+..|.++++|++|++++|+++ .+++..|.++++|++|+|++|+++ .++...|.++++|++|+
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L~  130 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLV  130 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEEE
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEEE
Confidence            5667777777766555566677777777777777665 344556666666666666666655 23333444455555554


Q ss_pred             cCCCccchhhhccccCCCCcccceeeeeccCCCCCCccCccccCCCcccEEEeccccCCCCCChhhhhcCCCCcEEEccC
Q 001313          468 AENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVN  547 (1102)
Q Consensus       468 l~~n~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~p~~l~~~~~L~~L~ls~~~~~~~~p~~~~~~~~~L~~L~L~~  547 (1102)
                      +++|.+..                                                     +|...++++++|++|++++
T Consensus       131 Ls~N~l~~-----------------------------------------------------l~~~~~~~L~~L~~L~Ls~  157 (635)
T 4g8a_A          131 AVETNLAS-----------------------------------------------------LENFPIGHLKTLKELNVAH  157 (635)
T ss_dssp             CTTSCCCC-----------------------------------------------------STTCCCTTCTTCCEEECCS
T ss_pred             CCCCcCCC-----------------------------------------------------CChhhhhcCcccCeecccc
Confidence            44444332                                                     1111134555555566655


Q ss_pred             CCCcCC-CcCCCCCCCCcCEEEccCCcCCCCCCchhhhcCC----CCcEEEccCCcccccCCcccCCCCCCcEEEccCcc
Q 001313          548 DSLVGP-FRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILS----RLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQ  622 (1102)
Q Consensus       548 n~l~~~-~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~----~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~  622 (1102)
                      |.+.+. .+..+..+++|++|++++|++++..|..+.. +.    ....++++.|.+....+..+. ...++.+++.+|.
T Consensus       158 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~-L~~l~~~~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~  235 (635)
T 4g8a_A          158 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV-LHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNF  235 (635)
T ss_dssp             SCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH-HHTCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCC
T ss_pred             CccccCCCchhhccchhhhhhcccCccccccccccccc-hhhhhhhhhhhhcccCcccccCccccc-chhhhhhhhhccc
Confidence            555442 2334456677777777777777544444432 22    345788888888866655554 3457788888887


Q ss_pred             cccccchhHhhcCCCCcEEEcccccc------CCcccccccCCCccCeeeccCccCc---ccCCCCcCCCCCCcEEEccC
Q 001313          623 LTGEIPEHLAMGCVSLRSLALSNNNL------EGHMFSRNFNLTNLIWLQLEGNHFV---GEIPQSLSKCSSLQGLFLSN  693 (1102)
Q Consensus       623 l~~~ip~~~~~~l~~L~~L~L~~n~l------~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~l~~  693 (1102)
                      ....++...+.++..++...+..+..      .......+.....+....+..+...   ...+..+..+.+++.+++.+
T Consensus       236 ~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~  315 (635)
T 4g8a_A          236 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVS  315 (635)
T ss_dssp             SSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEES
T ss_pred             ccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccc
Confidence            76666666677788888777654433      2333344455556666665554432   22344566778899999998


Q ss_pred             CcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCccccc--cc
Q 001313          694 NSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHG--QL  771 (1102)
Q Consensus       694 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~--~i  771 (1102)
                      +.+....  .+.....++.|++.+|.+.+..+.   .+..|+.++++.|.+.. .+....+++|+.++++.|.+..  ..
T Consensus       316 ~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~-~~~~~~l~~L~~L~ls~n~l~~~~~~  389 (635)
T 4g8a_A          316 VTIERVK--DFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGN-AFSEVDLPSLEFLDLSRNGLSFKGCC  389 (635)
T ss_dssp             CEEEECG--GGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCC-BCCCCBCTTCCEEECCSSCCBEEEEC
T ss_pred             ccccccc--ccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCC-Ccccccccccccchhhcccccccccc
Confidence            8876432  355667899999999988765443   45678889999888764 3445578899999999998853  33


Q ss_pred             CcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCc-hhhcCCCCCCEEECcCccCCCCCCccccc
Q 001313          772 KEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVP-IQLCRLNQLQLLDLSNNNLHGHIPSCFDN  850 (1102)
Q Consensus       772 ~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  850 (1102)
                      +. .+..+.+|+.++++.|.+.. .+..+..+++|+.+++++|+.....+ ..+..+++++.+++++|.+.+..|..+..
T Consensus       390 ~~-~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~  467 (635)
T 4g8a_A          390 SQ-SDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG  467 (635)
T ss_dssp             CH-HHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTT
T ss_pred             cc-chhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccccccccccccccccccccccccc
Confidence            44 66778899999999999875 55678889999999999888876654 56888999999999999999888876655


Q ss_pred             ccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCC-CCCcccccCCC
Q 001313          851 TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLI-GHIPPQIGNLT  929 (1102)
Q Consensus       851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-~~ip~~~~~l~  929 (1102)
                      ..                                                     .++.|+|++|++. +.+|..|..++
T Consensus       468 ~~-----------------------------------------------------~L~~L~Ls~N~~~~~~~~~~~~~l~  494 (635)
T 4g8a_A          468 LS-----------------------------------------------------SLEVLKMAGNSFQENFLPDIFTELR  494 (635)
T ss_dssp             CT-----------------------------------------------------TCCEEECTTCEEGGGEECSCCTTCT
T ss_pred             ch-----------------------------------------------------hhhhhhhhhcccccccCchhhhhcc
Confidence            43                                                     6889999999854 46788999999


Q ss_pred             cCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCCcccccc-CCCCcccc
Q 001313          930 KIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQF-ATFNESSY 1008 (1102)
Q Consensus       930 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~-~~~~~~~~ 1008 (1102)
                      +|++|||++|+|++.+|..|+++++|++|+|++|+|++..|..|.++++|++||+++|++++.+|..+..+ .++..+++
T Consensus       495 ~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L  574 (635)
T 4g8a_A          495 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL  574 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEEC
T ss_pred             ccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999877766 57888999


Q ss_pred             CCCCCCCCCCC
Q 001313         1009 EGNPFLCGPPL 1019 (1102)
Q Consensus      1009 ~gN~~lC~~~~ 1019 (1102)
                      .+||+.|+|.+
T Consensus       575 ~~Np~~C~C~~  585 (635)
T 4g8a_A          575 TQNDFACTCEH  585 (635)
T ss_dssp             TTCCBCCSGGG
T ss_pred             eCCCCcccCCc
Confidence            99999999864

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=4e-40  Score=387.76  Aligned_cols=376  Identities=20%  Similarity=0.197  Sum_probs=318.7

Q ss_pred             CEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEcc
Q 001313          565 RLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALS  644 (1102)
Q Consensus       565 ~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~  644 (1102)
                      +.++.+++.++ .+|. +   .++|++|++++|.+++..|..|.++++|++|++++|.+.+.++...+.++++|++|+++
T Consensus        13 ~~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls   87 (455)
T 3v47_A           13 YNAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD   87 (455)
T ss_dssp             TEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred             cccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence            45677777776 6776 2   47889999999999888888899999999999999988878877777788999999999


Q ss_pred             ccccCCcccccccCCCccCeeeccCccCcccCCC--CcCCCCCCcEEEccCCcCCCCCCcc-ccCCCCccEEECCCCccc
Q 001313          645 NNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQ--SLSKCSSLQGLFLSNNSLSGKIPRW-LGNLTVLRHIIMPKNHIE  721 (1102)
Q Consensus       645 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~l~~n~l~  721 (1102)
                      +|++++..+..+.++++|++|++++|.+++..+.  .+..+++|++|++++|++++..|.. +.++++|++|++++|.++
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  167 (455)
T 3v47_A           88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK  167 (455)
T ss_dssp             TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred             CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence            9999888888888999999999999998875544  3888899999999999998877765 788999999999999998


Q ss_pred             CCCcccccCC--CcccEEEccCcccccCCCCC---------CCCccccEEEccCcccccccCcccccCc---cCccEEEc
Q 001313          722 GPIPLEFCQL--RILQILDISDNNISGSLPSC---------YDFVCIEQVHLSKNMLHGQLKEGTFFNC---LTLMILDL  787 (1102)
Q Consensus       722 ~~~~~~~~~l--~~L~~L~ls~n~l~~~~p~~---------~~~~~L~~L~l~~n~l~~~i~~~~~~~~---~~L~~L~L  787 (1102)
                      +..+..+..+  .+|+.|++++|.+.+..+..         +..++|++|++++|++.+.+|. .+...   ++|+.|++
T Consensus       168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~~~~~~~L~~L~l  246 (455)
T 3v47_A          168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK-RFFDAIAGTKIQSLIL  246 (455)
T ss_dssp             CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHH-HHHHHTTTCCEEEEEC
T ss_pred             ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchh-hhhccccccceeeEee
Confidence            8888887766  68899999999888655443         2457899999999999887776 55543   78999999


Q ss_pred             cCccCcccC----------CccccC--CCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccc
Q 001313          788 SYNHLNGNI----------PDRVDG--LSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE  855 (1102)
Q Consensus       788 s~n~l~~~~----------p~~~~~--l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~  855 (1102)
                      ++|.+.+..          +..+.+  .++|++|++++|++++.+|..+..+++|+.|++++|++++..|..|.+++   
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~---  323 (455)
T 3v47_A          247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT---  323 (455)
T ss_dssp             TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT---
T ss_pred             ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcc---
Confidence            988655422          222222  36899999999999999999999999999999999999988888776654   


Q ss_pred             cccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEE
Q 001313          856 RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLN  935 (1102)
Q Consensus       856 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~  935 (1102)
                                                                        .|+.|+|++|++++..|..|+.+++|++|+
T Consensus       324 --------------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  353 (455)
T 3v47_A          324 --------------------------------------------------HLLKLNLSQNFLGSIDSRMFENLDKLEVLD  353 (455)
T ss_dssp             --------------------------------------------------TCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred             --------------------------------------------------cCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence                                                              689999999999998899999999999999


Q ss_pred             CCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCCcccccc
Q 001313          936 LSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQF 1000 (1102)
Q Consensus       936 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~ 1000 (1102)
                      |++|++++..|..|.++++|++|||++|++++..+..+..+++|++|++++|+++|.+|. ..++
T Consensus       354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~l  417 (455)
T 3v47_A          354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR-IDYL  417 (455)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT-THHH
T ss_pred             CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc-chHH
Confidence            999999999999999999999999999999987777889999999999999999999996 4444

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=3.5e-38  Score=380.64  Aligned_cols=412  Identities=21%  Similarity=0.205  Sum_probs=267.8

Q ss_pred             CcccEEEeccccCCCCCChhhhhcCCCCcEEEccCCCCcCCCcCCCCCCCCcCEEEccCCcCCCCCCchhhhcCCCCcEE
Q 001313          513 HDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVF  592 (1102)
Q Consensus       513 ~~L~~L~ls~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L  592 (1102)
                      ...+.++++++.+++ +|..+.   ++|++|++++|.+.+..+..+..+++|++|++++|++++..|..+.. +++|++|
T Consensus        31 ~~~~~l~ls~~~L~~-ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L  105 (562)
T 3a79_B           31 ELESMVDYSNRNLTH-VPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLF-NQDLEYL  105 (562)
T ss_dssp             --CCEEECTTSCCCS-CCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTT-CTTCCEE
T ss_pred             CCCcEEEcCCCCCcc-CCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCC-CCCCCEE
Confidence            344789999998886 666433   78899999999998888788888999999999999988555555544 8899999


Q ss_pred             EccCCcccccCCcccCCCCCCcEEEccCccccc-ccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccCcc
Q 001313          593 NISMNALDGSIPSSFGNMNFLQFLDLSNNQLTG-EIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNH  671 (1102)
Q Consensus       593 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  671 (1102)
                      ++++|+++ .+|..  .+++|++|++++|++++ .+|.. +.++++|++|++++|++++.....+.++ +|++|++++|.
T Consensus       106 ~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~L-~L~~L~L~~n~  180 (562)
T 3a79_B          106 DVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKE-FGNLTKLTFLGLSAAKFRQLDLLPVAHL-HLSCILLDLVS  180 (562)
T ss_dssp             ECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGG-GGGCTTCCEEEEECSBCCTTTTGGGTTS-CEEEEEEEESS
T ss_pred             ECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHh-hcccCcccEEecCCCccccCchhhhhhc-eeeEEEeeccc
Confidence            99999988 45555  78899999999999884 22344 4678899999999998876433333333 34999999998


Q ss_pred             C--cccCCCCcCCCC-CCcEEEccCCcCCCCCCc-cccCCCCccEEECCCCc----------------------------
Q 001313          672 F--VGEIPQSLSKCS-SLQGLFLSNNSLSGKIPR-WLGNLTVLRHIIMPKNH----------------------------  719 (1102)
Q Consensus       672 l--~~~~~~~~~~l~-~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~l~~n~----------------------------  719 (1102)
                      +  ++..|..+..+. ..-.+++++|.+.+.++. .+..+++|+.+++++|.                            
T Consensus       181 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~  260 (562)
T 3a79_B          181 YHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE  260 (562)
T ss_dssp             CCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEE
T ss_pred             ccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCc
Confidence            8  777777666543 111334455554443332 23334444444444442                            


Q ss_pred             ccCC----CcccccCCCcccEEEccCcccccCCCCCC------CC--------------------------ccccEEEcc
Q 001313          720 IEGP----IPLEFCQLRILQILDISDNNISGSLPSCY------DF--------------------------VCIEQVHLS  763 (1102)
Q Consensus       720 l~~~----~~~~~~~l~~L~~L~ls~n~l~~~~p~~~------~~--------------------------~~L~~L~l~  763 (1102)
                      +++.    ++.. ...++|++|++++|.++|.+|..+      .+                          .+++.|+++
T Consensus       261 l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~  339 (562)
T 3a79_B          261 TTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS  339 (562)
T ss_dssp             ECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEE
T ss_pred             CcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEcc
Confidence            1110    0111 112367777777777776666543      12                          235555555


Q ss_pred             CcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCcccccc--CchhhcCCCCCCEEECcCccCC
Q 001313          764 KNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGE--VPIQLCRLNQLQLLDLSNNNLH  841 (1102)
Q Consensus       764 ~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~Ls~N~l~  841 (1102)
                      +|.+....   ....+++|++|++++|++++..|..+.++++|++|++++|++++.  +|..+..+++|++|++++|+++
T Consensus       340 ~n~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~  416 (562)
T 3a79_B          340 DTPFIHMV---CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN  416 (562)
T ss_dssp             SSCCCCCC---CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCB
T ss_pred             CCCccccc---CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCC
Confidence            55553211   114566677777777777766677777777777777777777652  3455667777777777777776


Q ss_pred             CCCCcc-cccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCC
Q 001313          842 GHIPSC-FDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGH  920 (1102)
Q Consensus       842 ~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~  920 (1102)
                      +.+|.. +..+                                                     +.|+.|+|++|++++.
T Consensus       417 ~~~~~~~~~~l-----------------------------------------------------~~L~~L~l~~n~l~~~  443 (562)
T 3a79_B          417 SHAYDRTCAWA-----------------------------------------------------ESILVLNLSSNMLTGS  443 (562)
T ss_dssp             SCCSSCCCCCC-----------------------------------------------------TTCCEEECCSSCCCGG
T ss_pred             CccChhhhcCc-----------------------------------------------------ccCCEEECCCCCCCcc
Confidence            644432 2222                                                     2567777777777766


Q ss_pred             CcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchh-hhcCCCCCEEEcccCcCcccCCc
Q 001313          921 IPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQ-LVELNTLAVFSVAYNNLSGKIPE  995 (1102)
Q Consensus       921 ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~l~ls~N~l~~~~p~  995 (1102)
                      +|..+.  ++|++|+|++|+|+ .+|..+..+++|+.|||++|+|++ +|.. +..+++|+++++++|++.|.+|.
T Consensus       444 ~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          444 VFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             GGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred             hhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence            665554  56777777777777 555555577777777777777773 4444 67777777777777777776653

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2.3e-38  Score=368.20  Aligned_cols=321  Identities=25%  Similarity=0.288  Sum_probs=163.1

Q ss_pred             CCCccEEEcCCCcCCCCcchhccCCCCCcEEEcCCCccccccCCcccccCCccCeeecCCcccccccCccccccCCcceE
Q 001313          386 LVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKI  465 (1102)
Q Consensus       386 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~  465 (1102)
                      .++|++|++++|.+ +.+|..++++++|++|++++|.+.+.+ |..++++.+|+.+++..|..            .+++ 
T Consensus        10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~-p~~~~~l~~L~~l~l~~c~~------------~~l~-   74 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNA-PPGNGEQREMAVSRLRDCLD------------RQAH-   74 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTS-CTTSCCCHHHHHHHHHHHHH------------HTCS-
T ss_pred             cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccC-Ccccccchhcchhhhhhhhc------------cCCC-
Confidence            46778888888877 677877888888888888888877766 66677777766666665532            1233 


Q ss_pred             EecCCCccchhhhccccCCCCcccceeeeeccCCCCCCccCccccCCCcccEEEeccccCCCCCChhhhhcCCCCcEEEc
Q 001313          466 FDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSL  545 (1102)
Q Consensus       466 L~l~~n~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~p~~l~~~~~L~~L~ls~~~~~~~~p~~~~~~~~~L~~L~L  545 (1102)
                                                                         .|++++|.+.+ +|.    ..++|++|++
T Consensus        75 ---------------------------------------------------~L~l~~~~l~~-lp~----~~~~L~~L~l   98 (454)
T 1jl5_A           75 ---------------------------------------------------ELELNNLGLSS-LPE----LPPHLESLVA   98 (454)
T ss_dssp             ---------------------------------------------------EEECTTSCCSC-CCS----CCTTCSEEEC
T ss_pred             ---------------------------------------------------EEEecCCcccc-CCC----CcCCCCEEEc
Confidence                                                               33333333332 111    1234555555


Q ss_pred             cCCCCcCCCcCCCCCCCCcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEEccCccccc
Q 001313          546 VNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTG  625 (1102)
Q Consensus       546 ~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  625 (1102)
                      ++|.+++...    ..++|++|++++|.+++ +|..    .++|++|++++|++++ +| .|+++++|++|++++|+++ 
T Consensus        99 ~~n~l~~lp~----~~~~L~~L~l~~n~l~~-l~~~----~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-  166 (454)
T 1jl5_A           99 SCNSLTELPE----LPQSLKSLLVDNNNLKA-LSDL----PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-  166 (454)
T ss_dssp             CSSCCSSCCC----CCTTCCEEECCSSCCSC-CCSC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-
T ss_pred             cCCcCCcccc----ccCCCcEEECCCCccCc-ccCC----CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-
Confidence            5555554221    13566677777776662 3321    2567777777777775 55 4777777777777777776 


Q ss_pred             ccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCcccc
Q 001313          626 EIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLG  705 (1102)
Q Consensus       626 ~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~  705 (1102)
                      .+|..    ..+|++|++++|++++. | .+.++++|++|++++|.+++ +|...   ++|++|++++|.++ .+|. ++
T Consensus       167 ~lp~~----~~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp~-~~  234 (454)
T 1jl5_A          167 KLPDL----PPSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILE-ELPE-LQ  234 (454)
T ss_dssp             CCCCC----CTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCS-SCCC-CT
T ss_pred             ccCCC----cccccEEECcCCcCCcC-c-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCC-cccc-cC
Confidence            35542    24666666666666653 2 45666666666666666654 33221   35666666666665 4443 55


Q ss_pred             CCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEE
Q 001313          706 NLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMIL  785 (1102)
Q Consensus       706 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L  785 (1102)
                      .+++|++|++++|++++ +|..   .++|+.|++++|++++                        +|. .   +++|++|
T Consensus       235 ~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~------------------------l~~-~---~~~L~~L  282 (454)
T 1jl5_A          235 NLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD------------------------LPE-L---PQSLTFL  282 (454)
T ss_dssp             TCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC------------------------CCC-C---CTTCCEE
T ss_pred             CCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc------------------------cCc-c---cCcCCEE
Confidence            56666666666666553 2321   2455555555555543                        332 1   1445555


Q ss_pred             EccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCC-CCCCEEECcCccCCC
Q 001313          786 DLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRL-NQLQLLDLSNNNLHG  842 (1102)
Q Consensus       786 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~  842 (1102)
                      ++++|++++. |..   .++|++|++++|++++ ++    .+ ++|+.|++++|++++
T Consensus       283 ~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~  331 (454)
T 1jl5_A          283 DVSENIFSGL-SEL---PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE  331 (454)
T ss_dssp             ECCSSCCSEE-SCC---CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC
T ss_pred             ECcCCccCcc-cCc---CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc
Confidence            5555555541 111   1355555565555553 11    12 355666666666554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=6.7e-38  Score=368.79  Aligned_cols=367  Identities=21%  Similarity=0.193  Sum_probs=292.3

Q ss_pred             CCCcEEEccCCCCcCCCcCCCCCCCCcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEE
Q 001313          538 TKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLD  617 (1102)
Q Consensus       538 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  617 (1102)
                      ++|++|++++|.+++..+..+..+++|++|++++|.+.+.++...+..+++|++|++++|++++..|..|+++++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            56788888888887777777788888888888888887777666555588888888888888888888888888888888


Q ss_pred             ccCcccccccchh-HhhcCCCCcEEEccccccCCccccc-ccCCCccCeeeccCccCcccCCCCcCCC--CCCcEEEccC
Q 001313          618 LSNNQLTGEIPEH-LAMGCVSLRSLALSNNNLEGHMFSR-NFNLTNLIWLQLEGNHFVGEIPQSLSKC--SSLQGLFLSN  693 (1102)
Q Consensus       618 Ls~n~l~~~ip~~-~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~l~~  693 (1102)
                      +++|++++.+|.. .+..+++|++|++++|.+++..+.. +.++++|++|++++|.+++..+..+..+  .+|+.|++++
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~  189 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS  189 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence            8888887644432 3456788888888888888777665 6778888888888888887777777665  6778888888


Q ss_pred             CcCCCCCCccc--------cCCCCccEEECCCCcccCCCcccccCC---CcccEEEccCcccccCCCCCCCCccccEEEc
Q 001313          694 NSLSGKIPRWL--------GNLTVLRHIIMPKNHIEGPIPLEFCQL---RILQILDISDNNISGSLPSCYDFVCIEQVHL  762 (1102)
Q Consensus       694 n~l~~~~p~~~--------~~l~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l  762 (1102)
                      |.+.+..+.++        ..+++|++|++++|++++..|..+...   ++|+.|++++|...+.....           
T Consensus       190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-----------  258 (455)
T 3v47_A          190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH-----------  258 (455)
T ss_dssp             CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTC-----------
T ss_pred             CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccch-----------
Confidence            88875544432        255678888888888877777665543   67788888777665432211           


Q ss_pred             cCcccccccCcccccC--ccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccC
Q 001313          763 SKNMLHGQLKEGTFFN--CLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNL  840 (1102)
Q Consensus       763 ~~n~l~~~i~~~~~~~--~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  840 (1102)
                        +.+.+..+. .+..  .++|+.|++++|++++..|..+..+++|++|+|++|++++..|..|..+++|++|+|++|.+
T Consensus       259 --~~~~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  335 (455)
T 3v47_A          259 --TNFKDPDNF-TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL  335 (455)
T ss_dssp             --CSSCCCCTT-TTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             --hhhccCccc-ccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCcc
Confidence              111111111 3333  36899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCC
Q 001313          841 HGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGH  920 (1102)
Q Consensus       841 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~  920 (1102)
                      ++..|..|.+++                                                     .|+.|+|++|++++.
T Consensus       336 ~~~~~~~~~~l~-----------------------------------------------------~L~~L~Ls~N~l~~~  362 (455)
T 3v47_A          336 GSIDSRMFENLD-----------------------------------------------------KLEVLDLSYNHIRAL  362 (455)
T ss_dssp             CEECGGGGTTCT-----------------------------------------------------TCCEEECCSSCCCEE
T ss_pred             CCcChhHhcCcc-----------------------------------------------------cCCEEECCCCccccc
Confidence            888887776654                                                     689999999999999


Q ss_pred             CcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCch
Q 001313          921 IPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPY  971 (1102)
Q Consensus       921 ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  971 (1102)
                      .|..|..+++|++|+|++|++++..+..|..+++|+.|++++|++++.+|.
T Consensus       363 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          363 GDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             ChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            999999999999999999999998888899999999999999999998873

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=6.4e-38  Score=378.35  Aligned_cols=414  Identities=23%  Similarity=0.253  Sum_probs=327.4

Q ss_pred             cCCCCcEEEccCCCCcCCCcCCCCCCCCcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcE
Q 001313          536 NNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQF  615 (1102)
Q Consensus       536 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  615 (1102)
                      .+...+.+++++|.+++... .+  .+++++|++++|.+++..|..+. .+++|++|++++|++++..|.+|.++++|++
T Consensus        29 ~~~~~~~l~ls~~~L~~ip~-~~--~~~L~~L~Ls~N~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  104 (562)
T 3a79_B           29 SNELESMVDYSNRNLTHVPK-DL--PPRTKALSLSQNSISELRMPDIS-FLSELRVLRLSHNRIRSLDFHVFLFNQDLEY  104 (562)
T ss_dssp             ----CCEEECTTSCCCSCCT-TS--CTTCCEEECCSSCCCCCCGGGTT-TCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred             ccCCCcEEEcCCCCCccCCC-CC--CCCcCEEECCCCCccccChhhhc-cCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence            45556899999999997433 22  38999999999999954444554 4999999999999999999999999999999


Q ss_pred             EEccCcccccccchhHhhcCCCCcEEEccccccCCc-ccccccCCCccCeeeccCccCcccCCCCcCCCCCC--cEEEcc
Q 001313          616 LDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGH-MFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSL--QGLFLS  692 (1102)
Q Consensus       616 L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~l~  692 (1102)
                      |++++|+++ .+|..   .+++|++|++++|++++. .|..+.++++|++|++++|.+++.   .+..+++|  ++|+++
T Consensus       105 L~Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~  177 (562)
T 3a79_B          105 LDVSHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLD  177 (562)
T ss_dssp             EECTTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEE
T ss_pred             EECCCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEee
Confidence            999999998 88876   699999999999999985 468899999999999999999853   45566666  999999


Q ss_pred             CCcC--CCCCCccccCCC-CccEEECCCCcccCCCcc-cccCCCcccEEEccCccc------------------------
Q 001313          693 NNSL--SGKIPRWLGNLT-VLRHIIMPKNHIEGPIPL-EFCQLRILQILDISDNNI------------------------  744 (1102)
Q Consensus       693 ~n~l--~~~~p~~~~~l~-~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~ls~n~l------------------------  744 (1102)
                      +|.+  ++..|..+..+. ..-.+++++|.+.+.++. .+..+++|+.+++++|+.                        
T Consensus       178 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~  257 (562)
T 3a79_B          178 LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ  257 (562)
T ss_dssp             ESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEE
T ss_pred             cccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEec
Confidence            9999  888888887765 222568889988876554 466778888888888741                        


Q ss_pred             ----cc----CCCCCCCCccccEEEccCcccccccCcccc----cCcc--------------------------CccEEE
Q 001313          745 ----SG----SLPSCYDFVCIEQVHLSKNMLHGQLKEGTF----FNCL--------------------------TLMILD  786 (1102)
Q Consensus       745 ----~~----~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~----~~~~--------------------------~L~~L~  786 (1102)
                          ++    .++......+|++|++++|.+.|.+|...|    .+++                          +|+.|+
T Consensus       258 ~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~  337 (562)
T 3a79_B          258 HIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLS  337 (562)
T ss_dssp             EEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEE
T ss_pred             CCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEE
Confidence                10    001111234899999999999998988332    3333                          355666


Q ss_pred             ccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCC--CcccccccccccccCCCCCC
Q 001313          787 LSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHI--PSCFDNTTLHERYNNGSSLQ  864 (1102)
Q Consensus       787 Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~~~~~~~~~~~~~~~  864 (1102)
                      +++|.+....  ....+++|++|++++|++++.+|..+..+++|+.|++++|++++..  |..+.+++            
T Consensus       338 l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~------------  403 (562)
T 3a79_B          338 ISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS------------  403 (562)
T ss_dssp             EESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCT------------
T ss_pred             ccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCC------------
Confidence            6666554221  1267788888888888888888888888888888888888887632  34444333            


Q ss_pred             CccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcc-cccCCCcCCEEECCCCCCCC
Q 001313          865 PFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPP-QIGNLTKIQTLNLSHNNLAG  943 (1102)
Q Consensus       865 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~-~~~~l~~L~~L~Ls~N~l~~  943 (1102)
                                                               .|+.|+|++|++++.+|. .+..+++|++|+|++|++++
T Consensus       404 -----------------------------------------~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~  442 (562)
T 3a79_B          404 -----------------------------------------SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG  442 (562)
T ss_dssp             -----------------------------------------TCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCG
T ss_pred             -----------------------------------------CCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCc
Confidence                                                     689999999999986665 48899999999999999998


Q ss_pred             CCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCCcc-ccccCCCCccccCCCCCCCCCCC
Q 001313          944 PIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPER-AAQFATFNESSYEGNPFLCGPPL 1019 (1102)
Q Consensus       944 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~gN~~lC~~~~ 1019 (1102)
                      .+|..+.  ++|+.|||++|+++ .+|..+..+++|++|++++|++++ +|.. +..+..+..+++.+||+.|+|+.
T Consensus       443 ~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          443 SVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             GGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred             chhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence            8887765  78999999999999 788888899999999999999995 5553 67788888899999999998753

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=4.7e-37  Score=357.14  Aligned_cols=377  Identities=24%  Similarity=0.292  Sum_probs=257.1

Q ss_pred             CCcccEEEeccccCCCCCChhhhhcCCCCcEEEccCCCCcCCCcCCCCCCCCc-------------CEEEccCCcCCCCC
Q 001313          512 QHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQL-------------RLLDVSKNNFQGHI  578 (1102)
Q Consensus       512 ~~~L~~L~ls~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L-------------~~L~ls~n~l~~~i  578 (1102)
                      .+.|+.+++++|.+ +.+|..+ +++++|++|++++|.+.+..+..+..+.+|             ++|++++|.++ .+
T Consensus        10 ~~~L~~L~l~~n~l-~~iP~~i-~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~l   86 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMPVEA-ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SL   86 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CC
T ss_pred             cccchhhhcccCch-hhCChhH-hcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cC
Confidence            45778888888888 7777764 678888888888888887777777777664             88888888887 45


Q ss_pred             CchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccC
Q 001313          579 PLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFN  658 (1102)
Q Consensus       579 p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  658 (1102)
                      |..    .++|++|++++|.+++ +|..   +++|++|++++|+++ .+|..    .++|++|++++|++++ +| .+.+
T Consensus        87 p~~----~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l~~-lp-~~~~  151 (454)
T 1jl5_A           87 PEL----PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLEK-LP-ELQN  151 (454)
T ss_dssp             CSC----CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCSS-CC-CCTT
T ss_pred             CCC----cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccCC----CCCCCEEECcCCCCCC-Cc-ccCC
Confidence            541    4788889999888886 5643   378888899988887 45532    2688888998888887 44 5888


Q ss_pred             CCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEE
Q 001313          659 LTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILD  738 (1102)
Q Consensus       659 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  738 (1102)
                      +++|++|++++|++++ +|..+   ++|++|++++|++++ +| .++.+++|++|++++|++++ +|..   .++|+.|+
T Consensus       152 l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~  221 (454)
T 1jl5_A          152 SSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIV  221 (454)
T ss_dssp             CTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEE
T ss_pred             CCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEE
Confidence            8888899998888885 55433   488888998888885 56 58888888899998888875 4432   25788888


Q ss_pred             ccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccc
Q 001313          739 ISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEG  818 (1102)
Q Consensus       739 ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~  818 (1102)
                      +++|.++ .+|....+++|+.|++++|++.+ +|. .   +++|+.|++++|++++ +|..   .++|++|++++|++++
T Consensus       222 l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~-l~~-~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~  291 (454)
T 1jl5_A          222 AGNNILE-ELPELQNLPFLTTIYADNNLLKT-LPD-L---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG  291 (454)
T ss_dssp             CCSSCCS-SCCCCTTCTTCCEEECCSSCCSS-CCS-C---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE
T ss_pred             CcCCcCC-cccccCCCCCCCEEECCCCcCCc-ccc-c---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc
Confidence            8888887 66766677888888888888875 554 2   3688889999998886 5543   3788889999998886


Q ss_pred             cCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeee
Q 001313          819 EVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYT  898 (1102)
Q Consensus       819 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  898 (1102)
                      . |..   .++|+.|++++|++++. |                                                     
T Consensus       292 l-~~~---~~~L~~L~l~~N~l~~i-~-----------------------------------------------------  313 (454)
T 1jl5_A          292 L-SEL---PPNLYYLNASSNEIRSL-C-----------------------------------------------------  313 (454)
T ss_dssp             E-SCC---CTTCCEEECCSSCCSEE-C-----------------------------------------------------
T ss_pred             c-cCc---CCcCCEEECcCCcCCcc-c-----------------------------------------------------
Confidence            2 211   26788889988887641 1                                                     


Q ss_pred             ccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcc--cCchhhhcC
Q 001313          899 YQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSW--KIPYQLVEL  976 (1102)
Q Consensus       899 ~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l  976 (1102)
                         ..++.|+.|++++|++++ +|..   +++|++|++++|++++ +|.   .+++|++||+++|++++  .+|.++..+
T Consensus       314 ---~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L  382 (454)
T 1jl5_A          314 ---DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDL  382 (454)
T ss_dssp             ---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred             ---CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhh
Confidence               112368899999999996 6664   5789999999999994 666   47899999999999998  788888887


Q ss_pred             -------------CCCCEEEcccCcCcc--cCCc
Q 001313          977 -------------NTLAVFSVAYNNLSG--KIPE  995 (1102)
Q Consensus       977 -------------~~L~~l~ls~N~l~~--~~p~  995 (1102)
                                   ++|++|++++|++++  .+|.
T Consensus       383 ~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~  416 (454)
T 1jl5_A          383 RMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE  416 (454)
T ss_dssp             ECCC------------------------------
T ss_pred             hhcccccccccccCcCCEEECCCCcCCccccchh
Confidence                         889999999999998  7776

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=7.6e-36  Score=353.02  Aligned_cols=323  Identities=22%  Similarity=0.240  Sum_probs=241.9

Q ss_pred             CEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEcc
Q 001313          565 RLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALS  644 (1102)
Q Consensus       565 ~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~  644 (1102)
                      +.++.+++.++ .+|..+   .++++.|++++|++++..+..|.++++|++|+|++|++++..|. .+.++++|++|+++
T Consensus        14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~   88 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPG-AFNNLFNLRTLGLR   88 (477)
T ss_dssp             TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChh-hhhCCccCCEEECC
Confidence            57888888887 778765   46888999999999888888888899999999999888843344 44578888888888


Q ss_pred             ccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCC
Q 001313          645 NNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPI  724 (1102)
Q Consensus       645 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~  724 (1102)
                      +|+++...+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|..+++|+.|++++|.+++..
T Consensus        89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  168 (477)
T 2id5_A           89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP  168 (477)
T ss_dssp             SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred             CCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence            88888777777777888888888888887777777777888888888888777777777777777777777777777666


Q ss_pred             cccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCC
Q 001313          725 PLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLS  804 (1102)
Q Consensus       725 ~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~  804 (1102)
                      +..+..+++|+.|++++|.+.+                        ++...|..+++|+.|++++|...+.+|.......
T Consensus       169 ~~~l~~l~~L~~L~l~~n~i~~------------------------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~  224 (477)
T 2id5_A          169 TEALSHLHGLIVLRLRHLNINA------------------------IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL  224 (477)
T ss_dssp             HHHHTTCTTCCEEEEESCCCCE------------------------ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTC
T ss_pred             hhHhcccCCCcEEeCCCCcCcE------------------------eChhhcccCcccceeeCCCCccccccCcccccCc
Confidence            6667777777777777766652                        2333677778888888888877777777666666


Q ss_pred             CCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccc
Q 001313          805 QLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQI  884 (1102)
Q Consensus       805 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  884 (1102)
                      +|+.|++++|++++..+..+..+++|+.|+|++|++++..+..|.++.                                
T Consensus       225 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--------------------------------  272 (477)
T 2id5_A          225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL--------------------------------  272 (477)
T ss_dssp             CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCT--------------------------------
T ss_pred             cccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccc--------------------------------
Confidence            888888888888755556777788888888888877766655554433                                


Q ss_pred             cceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCc
Q 001313          885 LESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNK  964 (1102)
Q Consensus       885 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  964 (1102)
                                           .|+.|+|++|++++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|.
T Consensus       273 ---------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          273 ---------------------RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP  331 (477)
T ss_dssp             ---------------------TCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred             ---------------------cCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence                                 56777777777777777777777777777777777777666677777777777777777


Q ss_pred             CcccC
Q 001313          965 LSWKI  969 (1102)
Q Consensus       965 l~~~~  969 (1102)
                      +.+..
T Consensus       332 l~c~c  336 (477)
T 2id5_A          332 LACDC  336 (477)
T ss_dssp             EECSG
T ss_pred             ccCcc
Confidence            76543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=5.1e-36  Score=331.84  Aligned_cols=296  Identities=28%  Similarity=0.406  Sum_probs=181.3

Q ss_pred             ccccHHHHHHHHhhhhhccCCCCCCCCCCCCCCCCCCcC--cCceEecCCC--CcEEEEEcCCCCCCcccccccccCCCC
Q 001313           25 EGCLNHERFALLQLKLFFIDPYNYLLDWVDDEGATDCCQ--WERVSCNNTM--GRVVVLDLSQTHRGEYWYLNASLFTPF  100 (1102)
Q Consensus        25 ~~c~~~~~~all~~k~~~~~~~~~l~~w~~~~~~~~cc~--w~gv~c~~~~--~~v~~L~L~~~~~~~~~~~~~~~~~~~  100 (1102)
                      +.|.++|++||++||+++.||. .+++|.. +  +|||.  |.||+|+..+  ++|+.|+|+++.+.+...+ +..|+.+
T Consensus         1 ~~c~~~~~~aL~~~k~~~~~~~-~l~~W~~-~--~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~-~~~l~~l   75 (313)
T 1ogq_A            1 ELCNPQDKQALLQIKKDLGNPT-TLSSWLP-T--TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPI-PSSLANL   75 (313)
T ss_dssp             CCSCHHHHHHHHHHHHHTTCCG-GGTTCCT-T--SCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEEC-CGGGGGC
T ss_pred             CCCCHHHHHHHHHHHHhcCCcc-cccCCCC-C--CCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCccc-ChhHhCC
Confidence            3699999999999999998886 7999965 3  78998  9999998655  8999999998866552111 2345566


Q ss_pred             CCCCEEeCCC-CCCCCcccchhhhhhcCCCCCcEEeCCCCcCCcchhHhhhcCCCcCEEEcCCCcccCCCChhhhccCCC
Q 001313          101 QQLESLDLRD-NDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRD  179 (1102)
Q Consensus       101 ~~L~~L~Ls~-~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~  179 (1102)
                      ++|++|++++ |.+.+..+    ..++++++|++|++++|.+++.+|..++++++|++|++++|.+.+.+ +        
T Consensus        76 ~~L~~L~L~~~n~l~~~~p----~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p--------  142 (313)
T 1ogq_A           76 PYLNFLYIGGINNLVGPIP----PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL-P--------  142 (313)
T ss_dssp             TTCSEEEEEEETTEESCCC----GGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCC-C--------
T ss_pred             CCCCeeeCCCCCcccccCC----hhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcC-C--------
Confidence            6666666663 55554433    23455555555555555555555555555555555555555555432 2        


Q ss_pred             CcEEEcCCCcCCcccccCCccccCCCCCcCEEEcCCCcCChhhhHhhhccC-CCcEEEccCCcCCCCCchhhccCCCCCc
Q 001313          180 LEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLS-SLRSLLLYDNRLEGSIDVKEFDSLSNLE  258 (1102)
Q Consensus       180 L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~l~~l~~L~  258 (1102)
                                          ..+.++++|++|++++|.+++.+|..++.++ +|++|++++|.+.+.++. .+..++ |+
T Consensus       143 --------------------~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~-~~~~l~-L~  200 (313)
T 1ogq_A          143 --------------------PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP-TFANLN-LA  200 (313)
T ss_dssp             --------------------GGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCG-GGGGCC-CS
T ss_pred             --------------------hHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCCh-HHhCCc-cc
Confidence                                3444445555555555555444445555554 555555555555433332 444444 55


Q ss_pred             EEecccCccCCcchhhhhccccccceeccccccccCchhhhhhcCCCCCCCEEeCCCCCcccccccccccccccccccee
Q 001313          259 ELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKEL  338 (1102)
Q Consensus       259 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L  338 (1102)
                      +|++++|.+++..                           +..+..                                  
T Consensus       201 ~L~Ls~N~l~~~~---------------------------~~~~~~----------------------------------  219 (313)
T 1ogq_A          201 FVDLSRNMLEGDA---------------------------SVLFGS----------------------------------  219 (313)
T ss_dssp             EEECCSSEEEECC---------------------------GGGCCT----------------------------------
T ss_pred             EEECcCCcccCcC---------------------------CHHHhc----------------------------------
Confidence            5555555443211                           111222                                  


Q ss_pred             ecccchhhhchhhHHHhhccCCCCcEEecccCcCcCCcccccCCccCCCCccEEEcCCCcCCCCcchhccCCCCCcEEEc
Q 001313          339 YMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDV  418 (1102)
Q Consensus       339 ~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  418 (1102)
                                          +++|++|++++|.+++..+    .+..+++|++|++++|.+++.+|..+..+++|++|++
T Consensus       220 --------------------l~~L~~L~L~~N~l~~~~~----~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  275 (313)
T 1ogq_A          220 --------------------DKNTQKIHLAKNSLAFDLG----KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV  275 (313)
T ss_dssp             --------------------TSCCSEEECCSSEECCBGG----GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEEC
T ss_pred             --------------------CCCCCEEECCCCceeeecC----cccccCCCCEEECcCCcccCcCChHHhcCcCCCEEEC
Confidence                                2233333333333332222    1344667788888888887778888888888888888


Q ss_pred             CCCccccccCCcccccCCccCeeecCCcc
Q 001313          419 SSNQLIGSISSSPLIHLTSIEDLILSDNH  447 (1102)
Q Consensus       419 s~n~l~~~i~~~~l~~l~~L~~L~L~~n~  447 (1102)
                      ++|++++.++. . .++++|+.+++++|+
T Consensus       276 s~N~l~~~ip~-~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          276 SFNNLCGEIPQ-G-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             CSSEEEEECCC-S-TTGGGSCGGGTCSSS
T ss_pred             cCCcccccCCC-C-ccccccChHHhcCCC
Confidence            88888877743 2 778888888888886

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2.5e-34  Score=338.04  Aligned_cols=347  Identities=26%  Similarity=0.317  Sum_probs=223.3

Q ss_pred             cCCCCcEEEccCCCCcCCCcCCCCCCCCcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcE
Q 001313          536 NNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQF  615 (1102)
Q Consensus       536 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  615 (1102)
                      .+++++.|++.++.+....  .+..+++|++|++++|.+++ +|. +. .+++|++|++++|.+.+..+  +.++++|++
T Consensus        44 ~l~~l~~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~~-~~~-~~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~  116 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTD-ITP-LK-NLTKLVDILMNNNQIADITP--LANLTNLTG  116 (466)
T ss_dssp             HHHTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCC-CGG-GT-TCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             HhccccEEecCCCCCccCc--chhhhcCCCEEECCCCccCC-chh-hh-ccccCCEEECCCCccccChh--hcCCCCCCE
Confidence            3456666666666655422  24455556666666665552 232 22 25555666665555554333  555555555


Q ss_pred             EEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCc
Q 001313          616 LDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNS  695 (1102)
Q Consensus       616 L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  695 (1102)
                      |++++|+++ .++.  +..+++|++|++++|.+++..  .+..+++|++|+++ |.+.+..  .+..+++|++|++++|.
T Consensus       117 L~L~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~  188 (466)
T 1o6v_A          117 LTLFNNQIT-DIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNK  188 (466)
T ss_dssp             EECCSSCCC-CCGG--GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSC
T ss_pred             EECCCCCCC-CChH--HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCc
Confidence            555555555 3332  334555555555555554432  24445555555553 2222211  14444555555555554


Q ss_pred             CCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCccc
Q 001313          696 LSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGT  775 (1102)
Q Consensus       696 l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~  775 (1102)
                      ++                        +.  ..+..+++|+.|++++|.+.+..| ...+++|+.|++++|++.+ ++  .
T Consensus       189 l~------------------------~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~--~  238 (466)
T 1o6v_A          189 VS------------------------DI--SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD-IG--T  238 (466)
T ss_dssp             CC------------------------CC--GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-CG--G
T ss_pred             CC------------------------CC--hhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCccc-ch--h
Confidence            44                        32  124444455555555554444333 2234455555555555543 22  5


Q ss_pred             ccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccc
Q 001313          776 FFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE  855 (1102)
Q Consensus       776 ~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~  855 (1102)
                      +..+++|+.|++++|.+++..|  +..+++|+.|++++|++++..+  +..+++|+.|++++|++++..|  +..+    
T Consensus       239 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l----  308 (466)
T 1o6v_A          239 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNL----  308 (466)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGC----
T ss_pred             hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCC----
Confidence            7788899999999999987655  8888999999999999986554  8889999999999999886544  3322    


Q ss_pred             cccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEE
Q 001313          856 RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLN  935 (1102)
Q Consensus       856 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~  935 (1102)
                                                                       +.|+.|+|++|++++..|  +..+++|+.|+
T Consensus       309 -------------------------------------------------~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~  337 (466)
T 1o6v_A          309 -------------------------------------------------KNLTYLTLYFNNISDISP--VSSLTKLQRLF  337 (466)
T ss_dssp             -------------------------------------------------TTCSEEECCSSCCSCCGG--GGGCTTCCEEE
T ss_pred             -------------------------------------------------CCCCEEECcCCcCCCchh--hccCccCCEeE
Confidence                                                             268899999999998766  78899999999


Q ss_pred             CCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCccc
Q 001313          936 LSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGK  992 (1102)
Q Consensus       936 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~  992 (1102)
                      +++|.+++.  ..++++++|+.|++++|++++.+|  +..+++|+.|++++|++++.
T Consensus       338 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          338 FYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             CCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             CCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence            999999976  478899999999999999998877  88899999999999999873

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=5.9e-35  Score=339.75  Aligned_cols=354  Identities=18%  Similarity=0.145  Sum_probs=208.1

Q ss_pred             cCCCCcEEEccCCCCcCCCcCCCCCCCCcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcE
Q 001313          536 NNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQF  615 (1102)
Q Consensus       536 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  615 (1102)
                      ++++|++|++++|.+++..  .+..+++|++|++++|.+++ +|  +. .+++|++|++++|.+++. +  ++++++|++
T Consensus        40 ~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~-~~--~~-~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~  110 (457)
T 3bz5_A           40 QLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITT-LD--LS-QNTNLTYLACDSNKLTNL-D--VTPLTKLTY  110 (457)
T ss_dssp             HHTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSC-CC--CT-TCTTCSEEECCSSCCSCC-C--CTTCTTCCE
T ss_pred             HcCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCe-Ec--cc-cCCCCCEEECcCCCCcee-e--cCCCCcCCE
Confidence            3444444444444444431  34444555555555555542 22  22 245555555555555542 2  455555555


Q ss_pred             EEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCc
Q 001313          616 LDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNS  695 (1102)
Q Consensus       616 L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  695 (1102)
                      |++++|++++ +|   +..+++|++|++++|++++.   .+..+++|++|++++|...+.+  .+..+++|++|++++|+
T Consensus       111 L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~  181 (457)
T 3bz5_A          111 LNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK  181 (457)
T ss_dssp             EECCSSCCSC-CC---CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC
T ss_pred             EECCCCcCCe-ec---CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc
Confidence            5555555552 33   23455555555555555553   1445555555555555433333  34555556666666665


Q ss_pred             CCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCccc
Q 001313          696 LSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGT  775 (1102)
Q Consensus       696 l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~  775 (1102)
                      +++ +|  ++.+++|+.|++++|++++.   .+..+++|+.|++++|++++ +| ...+++|+.|++++|++++. |   
T Consensus       182 l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N~l~~~-~---  249 (457)
T 3bz5_A          182 ITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID-VTPLTQLTYFDCSVNPLTEL-D---  249 (457)
T ss_dssp             CCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSCCSCC-C---
T ss_pred             cce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC-ccccCCCCEEEeeCCcCCCc-C---
Confidence            554 33  55555566666666655543   25555566666666666555 33 33445555555555555542 2   


Q ss_pred             ccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccc
Q 001313          776 FFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE  855 (1102)
Q Consensus       776 ~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~  855 (1102)
                      +..+++|+.|++++|              +|+.|++++|++.+.+|  +..+++|+.|++++|+..+.+|.....++.  
T Consensus       250 ~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~--  311 (457)
T 3bz5_A          250 VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITE--  311 (457)
T ss_dssp             CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSC--
T ss_pred             HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceE--
Confidence            234455666666554              34556677777666666  456677777777777776666643222210  


Q ss_pred             cccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEE
Q 001313          856 RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLN  935 (1102)
Q Consensus       856 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~  935 (1102)
                                                      +++.           -.+.|+.|+|++|++++. +  ++.+++|+.|+
T Consensus       312 --------------------------------L~l~-----------~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~  345 (457)
T 3bz5_A          312 --------------------------------LDLS-----------QNPKLVYLYLNNTELTEL-D--VSHNTKLKSLS  345 (457)
T ss_dssp             --------------------------------CCCT-----------TCTTCCEEECTTCCCSCC-C--CTTCTTCSEEE
T ss_pred             --------------------------------echh-----------hcccCCEEECCCCccccc-c--cccCCcCcEEE
Confidence                                            0000           012689999999999984 3  89999999999


Q ss_pred             CCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCCcc
Q 001313          936 LSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPER  996 (1102)
Q Consensus       936 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~  996 (1102)
                      +++|+|++        ++.|+.|++++|+++|.     ..+..|..+++++|+++|.+|..
T Consensus       346 l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~  393 (457)
T 3bz5_A          346 CVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD  393 (457)
T ss_dssp             CCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred             CCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence            99999996        24677789999999987     24566788899999999999973

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=4e-34  Score=336.32  Aligned_cols=348  Identities=26%  Similarity=0.344  Sum_probs=288.7

Q ss_pred             CCcccEEEeccccCCCCCChhhhhcCCCCcEEEccCCCCcCCCcCCCCCCCCcCEEEccCCcCCCCCCchhhhcCCCCcE
Q 001313          512 QHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTV  591 (1102)
Q Consensus       512 ~~~L~~L~ls~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~  591 (1102)
                      +.+++.|++.++.+.. +|.  +..+++|++|++++|.+.+..+  +..+++|++|++++|.+++. +. +. .+++|++
T Consensus        45 l~~l~~L~l~~~~i~~-l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~-~l~~L~~  116 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKS-IDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI-TP-LA-NLTNLTG  116 (466)
T ss_dssp             HHTCCEEECCSSCCCC-CTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GT-TCTTCCE
T ss_pred             hccccEEecCCCCCcc-Ccc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccC-hh-hc-CCCCCCE
Confidence            5789999999998865 554  5689999999999999998765  88999999999999999854 43 44 4899999


Q ss_pred             EEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccCcc
Q 001313          592 FNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNH  671 (1102)
Q Consensus       592 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  671 (1102)
                      |++++|.+++..+  +.++++|++|++++|+++ .++.  +..+++|+.|+++ |.+.+..+  +.++++|++|++++|.
T Consensus       117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~-~~~~~~~~--~~~l~~L~~L~l~~n~  188 (466)
T 1o6v_A          117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNK  188 (466)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCSEEEEEEEEEC-CCGG--GTTCTTCSEEEEE-ESCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             EECCCCCCCCChH--HcCCCCCCEEECCCCccC-CChh--hccCCcccEeecC-CcccCchh--hccCCCCCEEECcCCc
Confidence            9999999997543  899999999999999998 5664  4689999999997 55655433  7899999999999999


Q ss_pred             CcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCC
Q 001313          672 FVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSC  751 (1102)
Q Consensus       672 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~  751 (1102)
                      +.+.  ..+..+++|++|++++|.+.+..|  ++.+++|+.|++++|.+++.  ..+..+++|+.|++++|.+++.    
T Consensus       189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~----  258 (466)
T 1o6v_A          189 VSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL----  258 (466)
T ss_dssp             CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC----
T ss_pred             CCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccc----
Confidence            8854  358889999999999999986655  77889999999999998754  3577888888888888877632    


Q ss_pred             CCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCC
Q 001313          752 YDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQ  831 (1102)
Q Consensus       752 ~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  831 (1102)
                                          +  .+..+++|+.|++++|.+++..+  +..+++|+.|++++|++++..|  +..+++|+
T Consensus       259 --------------------~--~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~  312 (466)
T 1o6v_A          259 --------------------A--PLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLT  312 (466)
T ss_dssp             --------------------G--GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCS
T ss_pred             --------------------h--hhhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCC
Confidence                                1  25667888888888888886544  7888899999999999886554  78899999


Q ss_pred             EEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEE
Q 001313          832 LLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLD  911 (1102)
Q Consensus       832 ~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  911 (1102)
                      .|++++|++++..|  +..++                                                     .|+.|+
T Consensus       313 ~L~L~~n~l~~~~~--~~~l~-----------------------------------------------------~L~~L~  337 (466)
T 1o6v_A          313 YLTLYFNNISDISP--VSSLT-----------------------------------------------------KLQRLF  337 (466)
T ss_dssp             EEECCSSCCSCCGG--GGGCT-----------------------------------------------------TCCEEE
T ss_pred             EEECcCCcCCCchh--hccCc-----------------------------------------------------cCCEeE
Confidence            99999999887655  33222                                                     688999


Q ss_pred             CCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCch
Q 001313          912 LSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPY  971 (1102)
Q Consensus       912 Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  971 (1102)
                      +++|++++.  +.+..+++|+.|++++|++++.+|  +..+++|+.|++++|++++ +|.
T Consensus       338 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~-~p~  392 (466)
T 1o6v_A          338 FYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN-APV  392 (466)
T ss_dssp             CCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC-CCB
T ss_pred             CCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC-Cch
Confidence            999999875  478999999999999999998887  8999999999999999996 343

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.4e-34  Score=342.30  Aligned_cols=345  Identities=18%  Similarity=0.142  Sum_probs=219.0

Q ss_pred             cEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccC
Q 001313          590 TVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEG  669 (1102)
Q Consensus       590 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  669 (1102)
                      +.++.++++++ .+|..+.  +.+++|++++|+++ .++...+..+++|++|+|++|.+++..+..|.++++|++|+|++
T Consensus        14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~   89 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS   89 (477)
T ss_dssp             TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence            45566666665 3454442  46667777777766 34433445666777777777777666666666777777777777


Q ss_pred             ccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCC
Q 001313          670 NHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLP  749 (1102)
Q Consensus       670 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p  749 (1102)
                      |.+++..+..|..+++|++|++++|++.+..|..|..+++|++|++++|.+++..+..|..+++|+.|++++|++++   
T Consensus        90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---  166 (477)
T 2id5_A           90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS---  166 (477)
T ss_dssp             SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS---
T ss_pred             CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc---
Confidence            77665555566667777777777777766666666667777777777777666666666666666666666666542   


Q ss_pred             CCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCC
Q 001313          750 SCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQ  829 (1102)
Q Consensus       750 ~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  829 (1102)
                                           ++...|.++++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+.+|.......+
T Consensus       167 ---------------------~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  225 (477)
T 2id5_A          167 ---------------------IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN  225 (477)
T ss_dssp             ---------------------CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCC
T ss_pred             ---------------------cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCcc
Confidence                                 33335666666777777777776666666666777777777776666666666555566


Q ss_pred             CCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCce
Q 001313          830 LQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSG  909 (1102)
Q Consensus       830 L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  909 (1102)
                      |+.|++++|.+++..+..|..+.                                                     .|+.
T Consensus       226 L~~L~l~~n~l~~~~~~~~~~l~-----------------------------------------------------~L~~  252 (477)
T 2id5_A          226 LTSLSITHCNLTAVPYLAVRHLV-----------------------------------------------------YLRF  252 (477)
T ss_dssp             CSEEEEESSCCCSCCHHHHTTCT-----------------------------------------------------TCCE
T ss_pred             ccEEECcCCcccccCHHHhcCcc-----------------------------------------------------ccCe
Confidence            77777777766644333343332                                                     4666


Q ss_pred             EECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcC
Q 001313          910 LDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNL  989 (1102)
Q Consensus       910 L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l  989 (1102)
                      |+|++|++++..+..|..+++|+.|+|++|++++..|..|.++++|+.|||++|+|++..+..|..+++|+.|++++|++
T Consensus       253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  332 (477)
T 2id5_A          253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL  332 (477)
T ss_dssp             EECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred             eECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence            77777777666666666677777777777777766666777777777777777777766555666666777777777777


Q ss_pred             cccCCcccccc-CCCCccccCCCCCCCCC
Q 001313          990 SGKIPERAAQF-ATFNESSYEGNPFLCGP 1017 (1102)
Q Consensus       990 ~~~~p~~~~~~-~~~~~~~~~gN~~lC~~ 1017 (1102)
                      .|.++.  .++ .......+.++...|..
T Consensus       333 ~c~c~~--~~~~~~~~~~~~~~~~~~C~~  359 (477)
T 2id5_A          333 ACDCRL--LWVFRRRWRLNFNRQQPTCAT  359 (477)
T ss_dssp             ECSGGG--HHHHTTTTSSCCTTCCCBEEE
T ss_pred             cCccch--HhHHhhhhccccCccCceeCC
Confidence            665543  121 22222344555556643

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=3.8e-34  Score=332.92  Aligned_cols=271  Identities=20%  Similarity=0.151  Sum_probs=162.1

Q ss_pred             CCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCee
Q 001313          586 LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWL  665 (1102)
Q Consensus       586 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  665 (1102)
                      +++|++|++++|++++.   .++.+++|++|++++|+..+.++   +..+++|++|++++|++++..   +..+++|++|
T Consensus       126 l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L  196 (457)
T 3bz5_A          126 NPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITELD---VSQNKLLNRL  196 (457)
T ss_dssp             CTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCCC---CTTCTTCCEE
T ss_pred             CCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccceec---cccCCCCCEE
Confidence            44444444444444432   14444455555555553333332   223455555555555554431   4455556666


Q ss_pred             eccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccc
Q 001313          666 QLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNIS  745 (1102)
Q Consensus       666 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~  745 (1102)
                      ++++|.+++.   .+..+++|++|++++|++++ +|  ++.+++|+.|++++|++++..   +..+++|+.|++++|+  
T Consensus       197 ~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~--  265 (457)
T 3bz5_A          197 NCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTD--  265 (457)
T ss_dssp             ECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCC--
T ss_pred             ECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCC--
Confidence            6666665543   25556666666666666664 44  566666666666666666543   3445566666666653  


Q ss_pred             cCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhc
Q 001313          746 GSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLC  825 (1102)
Q Consensus       746 ~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~  825 (1102)
                                 |+.+++++|.+.+.+|   +.++++|+.|++++|...+.+|.   ..++|+.|++++|           
T Consensus       266 -----------L~~L~l~~n~~~~~~~---~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-----------  317 (457)
T 3bz5_A          266 -----------LLEIDLTHNTQLIYFQ---AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-----------  317 (457)
T ss_dssp             -----------CSCCCCTTCTTCCEEE---CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-----------
T ss_pred             -----------CCEEECCCCccCCccc---ccccccCCEEECCCCcccceecc---CCCcceEechhhc-----------
Confidence                       3456666676666665   35667788888888877766664   3345555555544           


Q ss_pred             CCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCC
Q 001313          826 RLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPS  905 (1102)
Q Consensus       826 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  905 (1102)
                        ++|+.|++++|++++. |  +++++                                                     
T Consensus       318 --~~L~~L~L~~N~l~~l-~--l~~l~-----------------------------------------------------  339 (457)
T 3bz5_A          318 --PKLVYLYLNNTELTEL-D--VSHNT-----------------------------------------------------  339 (457)
T ss_dssp             --TTCCEEECTTCCCSCC-C--CTTCT-----------------------------------------------------
T ss_pred             --ccCCEEECCCCccccc-c--cccCC-----------------------------------------------------
Confidence              5777888888887763 2  33322                                                     


Q ss_pred             CCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhc
Q 001313          906 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVE  975 (1102)
Q Consensus       906 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~  975 (1102)
                      .|+.||+++|++++        ++.|..|++++|.++|.     +.+..|+.+|+++|+++|.+|..+..
T Consensus       340 ~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~  396 (457)
T 3bz5_A          340 KLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLD  396 (457)
T ss_dssp             TCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred             cCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhc
Confidence            57778888888875        24566677888888876     34566778888888888888876543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=7.4e-34  Score=326.34  Aligned_cols=333  Identities=22%  Similarity=0.189  Sum_probs=208.2

Q ss_pred             CCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEc
Q 001313          612 FLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFL  691 (1102)
Q Consensus       612 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  691 (1102)
                      ++++|++++|.++ .+|..++..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus        46 ~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  124 (390)
T 3o6n_A           46 NQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  124 (390)
T ss_dssp             CCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence            3444444444443 344444444444444444444444444444444444444444444444444444444555555555


Q ss_pred             cCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCccccccc
Q 001313          692 SNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQL  771 (1102)
Q Consensus       692 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i  771 (1102)
                      ++|+++...+..|..+++|++|++++|.+++..|..+..+++|+.|++++|++++.  ....+++|+.+++++|.+.+  
T Consensus       125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~L~~L~l~~n~l~~--  200 (390)
T 3o6n_A          125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNLLST--  200 (390)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC--CGGGCTTCSEEECCSSCCSE--
T ss_pred             CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc--ccccccccceeecccccccc--
Confidence            55544432222334445555555555555444444444555555555555554432  11223455555555555442  


Q ss_pred             CcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccc
Q 001313          772 KEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNT  851 (1102)
Q Consensus       772 ~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~  851 (1102)
                          +...++|+.|++++|.++.. |..  ..++|+.|++++|++++.  ..+..+++|+.|++++|.+++..|..|..+
T Consensus       201 ----~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l  271 (390)
T 3o6n_A          201 ----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKM  271 (390)
T ss_dssp             ----EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred             ----cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcccc
Confidence                23335678888888887754 222  246788888888888753  467788888888888888887777766554


Q ss_pred             cccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcC
Q 001313          852 TLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKI  931 (1102)
Q Consensus       852 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L  931 (1102)
                      +                                                     .|+.|+|++|++++ +|..+..+++|
T Consensus       272 ~-----------------------------------------------------~L~~L~L~~n~l~~-~~~~~~~l~~L  297 (390)
T 3o6n_A          272 Q-----------------------------------------------------RLERLYISNNRLVA-LNLYGQPIPTL  297 (390)
T ss_dssp             S-----------------------------------------------------SCCEEECCSSCCCE-EECSSSCCTTC
T ss_pred             c-----------------------------------------------------cCCEEECCCCcCcc-cCcccCCCCCC
Confidence            4                                                     67888888888875 56677788999


Q ss_pred             CEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCCccccccCCCCccccCCC
Q 001313          932 QTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGN 1011 (1102)
Q Consensus       932 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~gN 1011 (1102)
                      ++|+|++|+++ .+|..+..+++|+.|+|++|+++.. |  +..+++|+.|++++|++.+....  ..+..+....+.++
T Consensus       298 ~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~~~  371 (390)
T 3o6n_A          298 KVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVDDA  371 (390)
T ss_dssp             CEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBCCC
T ss_pred             CEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH--HHHHHHHhhccccc
Confidence            99999999998 5677788899999999999999854 3  67788999999999999886443  55667777778888


Q ss_pred             CCCCCCC
Q 001313         1012 PFLCGPP 1018 (1102)
Q Consensus      1012 ~~lC~~~ 1018 (1102)
                      +..|.++
T Consensus       372 ~~~c~~~  378 (390)
T 3o6n_A          372 DQHCKID  378 (390)
T ss_dssp             CSCCCTT
T ss_pred             Cceeccc
Confidence            8888764

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=3.9e-34  Score=346.84  Aligned_cols=333  Identities=22%  Similarity=0.183  Sum_probs=216.2

Q ss_pred             CCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEc
Q 001313          612 FLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFL  691 (1102)
Q Consensus       612 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  691 (1102)
                      +++.+++++|.+. .+|..++..+++|++|++++|.+++..+..|.++++|++|+|++|.+++..|..|+.+++|++|++
T Consensus        52 ~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  130 (597)
T 3oja_B           52 NQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  130 (597)
T ss_dssp             CCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence            3444444444443 344444444444444444444444444444444445555555555544444444445555555555


Q ss_pred             cCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCccccccc
Q 001313          692 SNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQL  771 (1102)
Q Consensus       692 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i  771 (1102)
                      ++|.+++..+..|+++++|++|++++|.+++..|..|..+++|+.|++++|.+++..  ...+++|+.|++++|.+.+  
T Consensus       131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~--  206 (597)
T 3oja_B          131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLST--  206 (597)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSE--
T ss_pred             eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCcccc--
Confidence            555554333333444555555555555555444444555555555555555544321  1223455555555555542  


Q ss_pred             CcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccc
Q 001313          772 KEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNT  851 (1102)
Q Consensus       772 ~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~  851 (1102)
                          +...++|+.|++++|.++...+..   .++|+.|+|++|.+++  +..+..+++|+.|+|++|.+++.+|..|..+
T Consensus       207 ----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l  277 (597)
T 3oja_B          207 ----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKM  277 (597)
T ss_dssp             ----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred             ----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCc
Confidence                233456888888888887544332   2578888888888886  3678888888888888888888888777655


Q ss_pred             cccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcC
Q 001313          852 TLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKI  931 (1102)
Q Consensus       852 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L  931 (1102)
                      +                                                     .|+.|+|++|++++ +|..+..+++|
T Consensus       278 ~-----------------------------------------------------~L~~L~Ls~N~l~~-l~~~~~~l~~L  303 (597)
T 3oja_B          278 Q-----------------------------------------------------RLERLYISNNRLVA-LNLYGQPIPTL  303 (597)
T ss_dssp             S-----------------------------------------------------SCCEEECTTSCCCE-EECSSSCCTTC
T ss_pred             c-----------------------------------------------------CCCEEECCCCCCCC-CCcccccCCCC
Confidence            4                                                     68889999998886 57777889999


Q ss_pred             CEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCCccccccCCCCccccCCC
Q 001313          932 QTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGN 1011 (1102)
Q Consensus       932 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~gN 1011 (1102)
                      +.|+|++|.++ .+|..+..+++|+.|+|++|++++. |  +..+++|+.|++++|+++|..+.  ..+..+....+.++
T Consensus       304 ~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~~~  377 (597)
T 3oja_B          304 KVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVDDA  377 (597)
T ss_dssp             CEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBCCC
T ss_pred             cEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH--HHHHHHhhhccccc
Confidence            99999999999 6788889999999999999999865 3  66788999999999999987543  56777777788899


Q ss_pred             CCCCCCC
Q 001313         1012 PFLCGPP 1018 (1102)
Q Consensus      1012 ~~lC~~~ 1018 (1102)
                      +..|+.+
T Consensus       378 ~~~C~~~  384 (597)
T 3oja_B          378 DQHCKID  384 (597)
T ss_dssp             CCCCCTT
T ss_pred             cccCCcc
Confidence            9999864

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=5.2e-34  Score=315.71  Aligned_cols=258  Identities=33%  Similarity=0.533  Sum_probs=216.7

Q ss_pred             CCCcEEEccCCcCCC--CCCccccCCCCccEEECCC-CcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEE
Q 001313          684 SSLQGLFLSNNSLSG--KIPRWLGNLTVLRHIIMPK-NHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQV  760 (1102)
Q Consensus       684 ~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L  760 (1102)
                      .+++.|++++|.+++  .+|..+.++++|++|++++ |.+.+.+|..|.++++|++|++++|++++              
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--------------  115 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG--------------  115 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE--------------
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC--------------
Confidence            356677777777766  6677777777777777774 67777777777777777777777766653              


Q ss_pred             EccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCC-CCCEEECcCcc
Q 001313          761 HLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLN-QLQLLDLSNNN  839 (1102)
Q Consensus       761 ~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~Ls~N~  839 (1102)
                               .+|. .|.++++|++|++++|.+++.+|..+..+++|++|++++|++++.+|..+..++ +|+.|++++|+
T Consensus       116 ---------~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~  185 (313)
T 1ogq_A          116 ---------AIPD-FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR  185 (313)
T ss_dssp             ---------ECCG-GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred             ---------cCCH-HHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe
Confidence                     3444 677788888888888888888888888888888899988888888888888887 88999999999


Q ss_pred             CCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCC
Q 001313          840 LHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIG  919 (1102)
Q Consensus       840 l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~  919 (1102)
                      +++.+|..+..+.                                                      |+.|+|++|++++
T Consensus       186 l~~~~~~~~~~l~------------------------------------------------------L~~L~Ls~N~l~~  211 (313)
T 1ogq_A          186 LTGKIPPTFANLN------------------------------------------------------LAFVDLSRNMLEG  211 (313)
T ss_dssp             EEEECCGGGGGCC------------------------------------------------------CSEEECCSSEEEE
T ss_pred             eeccCChHHhCCc------------------------------------------------------ccEEECcCCcccC
Confidence            8888887765432                                                      7889999999999


Q ss_pred             CCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCCccccc
Q 001313          920 HIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQ  999 (1102)
Q Consensus       920 ~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~  999 (1102)
                      .+|..|..+++|++|+|++|.+++.+|. +..+++|++|||++|++++.+|..+..+++|++|++++|+++|.+|. ..+
T Consensus       212 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~  289 (313)
T 1ogq_A          212 DASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGN  289 (313)
T ss_dssp             CCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STT
T ss_pred             cCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC-Ccc
Confidence            9999999999999999999999988777 88999999999999999999999999999999999999999999999 488


Q ss_pred             cCCCCccccCCCCCCCCCCCCC
Q 001313         1000 FATFNESSYEGNPFLCGPPLPI 1021 (1102)
Q Consensus      1000 ~~~~~~~~~~gN~~lC~~~~~~ 1021 (1102)
                      +..+....+.+||++||.|+..
T Consensus       290 l~~L~~l~l~~N~~lc~~p~~~  311 (313)
T 1ogq_A          290 LQRFDVSAYANNKCLCGSPLPA  311 (313)
T ss_dssp             GGGSCGGGTCSSSEEESTTSSC
T ss_pred             ccccChHHhcCCCCccCCCCCC
Confidence            9999999999999999988764

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=7.7e-32  Score=309.52  Aligned_cols=314  Identities=22%  Similarity=0.247  Sum_probs=223.8

Q ss_pred             CCCcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcE
Q 001313          561 HKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRS  640 (1102)
Q Consensus       561 ~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~  640 (1102)
                      +++++.+++++|.++ .+|..++..+++|++|++++|.+++..+..|..+++|++|++++|+++ .++...+.++++|++
T Consensus        44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred             cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCE
Confidence            466777777777776 667666555778888888888877777777777888888888888777 444444456677777


Q ss_pred             EEccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcc
Q 001313          641 LALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHI  720 (1102)
Q Consensus       641 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l  720 (1102)
                      |++++|.++...+..+.++++|++|++++|.+++..+..+..+++|++|++++|++++.   .++.+++|+.|++++|.+
T Consensus       122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l  198 (390)
T 3o6n_A          122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL  198 (390)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred             EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence            77777777655555556666666666666666665566666666666666666666543   134455566666666655


Q ss_pred             cCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccc
Q 001313          721 EGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV  800 (1102)
Q Consensus       721 ~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~  800 (1102)
                      ++     +...++|+.|++++|.+.                       . +|.   ...++|+.|++++|.+++.  ..+
T Consensus       199 ~~-----~~~~~~L~~L~l~~n~l~-----------------------~-~~~---~~~~~L~~L~l~~n~l~~~--~~l  244 (390)
T 3o6n_A          199 ST-----LAIPIAVEELDASHNSIN-----------------------V-VRG---PVNVELTILKLQHNNLTDT--AWL  244 (390)
T ss_dssp             SE-----EECCSSCSEEECCSSCCC-----------------------E-EEC---CCCSSCCEEECCSSCCCCC--GGG
T ss_pred             cc-----cCCCCcceEEECCCCeee-----------------------e-ccc---cccccccEEECCCCCCccc--HHH
Confidence            42     122234555555555443                       2 233   1236788899999988864  578


Q ss_pred             cCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCc
Q 001313          801 DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDP  880 (1102)
Q Consensus       801 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  880 (1102)
                      ..+++|++|++++|++++..|..+..+++|+.|++++|++++. |..+..+                             
T Consensus       245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l-----------------------------  294 (390)
T 3o6n_A          245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPI-----------------------------  294 (390)
T ss_dssp             GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSSSCC-----------------------------
T ss_pred             cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-CcccCCC-----------------------------
Confidence            8889999999999999988888999999999999999988753 3222211                             


Q ss_pred             cccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeC
Q 001313          881 KKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDL  960 (1102)
Q Consensus       881 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  960 (1102)
                                              +.|+.|+|++|+++ .+|..+..+++|++|+|++|.+++. |  +..+++|+.|++
T Consensus       295 ------------------------~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l  346 (390)
T 3o6n_A          295 ------------------------PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTL  346 (390)
T ss_dssp             ------------------------TTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEEC
T ss_pred             ------------------------CCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEc
Confidence                                    26899999999998 5788889999999999999999965 3  778899999999


Q ss_pred             CCCcCcccCch
Q 001313          961 SYNKLSWKIPY  971 (1102)
Q Consensus       961 s~N~l~~~~p~  971 (1102)
                      ++|++++.-..
T Consensus       347 ~~N~~~~~~~~  357 (390)
T 3o6n_A          347 SHNDWDCNSLR  357 (390)
T ss_dssp             CSSCEEHHHHH
T ss_pred             CCCCccchhHH
Confidence            99999975433

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.98  E-value=4e-31  Score=298.68  Aligned_cols=304  Identities=23%  Similarity=0.329  Sum_probs=183.2

Q ss_pred             CCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCee
Q 001313          586 LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWL  665 (1102)
Q Consensus       586 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  665 (1102)
                      +++|++|++++|.+.. ++ .+..+++|++|++++|+++ .++.  +..+++|++|++++|.++..  ..+.++++|++|
T Consensus        43 l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L  115 (347)
T 4fmz_A           43 LESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL  115 (347)
T ss_dssp             HTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred             cccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence            4455555555555542 22 2555555555555555555 3333  33455555555555555443  234555666666


Q ss_pred             eccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccc
Q 001313          666 QLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNIS  745 (1102)
Q Consensus       666 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~  745 (1102)
                      ++++|.+.+..+  +..+++|++|++++|.....++ .+..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+.
T Consensus       116 ~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~  190 (347)
T 4fmz_A          116 YLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE  190 (347)
T ss_dssp             ECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred             ECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc
Confidence            666666553322  5566666666666665443333 25666666666666666654333  556666666666666554


Q ss_pred             cCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhc
Q 001313          746 GSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLC  825 (1102)
Q Consensus       746 ~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~  825 (1102)
                      +                        ++  .+..+++|+.|++++|.+++..+  +..+++|++|++++|++++..+  +.
T Consensus       191 ~------------------------~~--~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~  240 (347)
T 4fmz_A          191 D------------------------IS--PLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LA  240 (347)
T ss_dssp             C------------------------CG--GGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GT
T ss_pred             c------------------------cc--cccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hh
Confidence            2                        22  14555666666666666665433  5666677777777777764433  66


Q ss_pred             CCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCC
Q 001313          826 RLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPS  905 (1102)
Q Consensus       826 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  905 (1102)
                      .+++|++|++++|.+++. + .+..+                                                     +
T Consensus       241 ~l~~L~~L~l~~n~l~~~-~-~~~~l-----------------------------------------------------~  265 (347)
T 4fmz_A          241 NLSQLTWLEIGTNQISDI-N-AVKDL-----------------------------------------------------T  265 (347)
T ss_dssp             TCTTCCEEECCSSCCCCC-G-GGTTC-----------------------------------------------------T
T ss_pred             cCCCCCEEECCCCccCCC-h-hHhcC-----------------------------------------------------C
Confidence            677777777777766542 1 12111                                                     2


Q ss_pred             CCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcc
Q 001313          906 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA  985 (1102)
Q Consensus       906 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls  985 (1102)
                      .|+.|++++|++++.  +.+..+++|+.|++++|.+++..|..|+.+++|+.|++++|++++..|  +..+++|++|+++
T Consensus       266 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~  341 (347)
T 4fmz_A          266 KLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFA  341 (347)
T ss_dssp             TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSS
T ss_pred             CcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehh
Confidence            567777777777654  357777888888888888887778888888888888888888886655  7778888888888


Q ss_pred             cCcCc
Q 001313          986 YNNLS  990 (1102)
Q Consensus       986 ~N~l~  990 (1102)
                      +|+++
T Consensus       342 ~N~i~  346 (347)
T 4fmz_A          342 NQVIK  346 (347)
T ss_dssp             CC---
T ss_pred             hhccc
Confidence            88764

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.98  E-value=2.5e-31  Score=322.17  Aligned_cols=315  Identities=22%  Similarity=0.252  Sum_probs=230.6

Q ss_pred             CCCcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcE
Q 001313          561 HKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRS  640 (1102)
Q Consensus       561 ~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~  640 (1102)
                      +.+++.+++++|.+. .+|..++..+++|++|++++|.+++..|..|+.+++|++|+|++|.++ .+|...+.++++|++
T Consensus        50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~  127 (597)
T 3oja_B           50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV  127 (597)
T ss_dssp             GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred             CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCE
Confidence            456677777777776 667766666788888888888888777778888888888888888887 455555556777777


Q ss_pred             EEccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcc
Q 001313          641 LALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHI  720 (1102)
Q Consensus       641 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l  720 (1102)
                      |++++|.+++..+..|.++++|++|++++|.+++..|..|..+++|++|++++|.+++..   ++.+++|+.|++++|.+
T Consensus       128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l  204 (597)
T 3oja_B          128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLL  204 (597)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCC
T ss_pred             EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcc
Confidence            777777777666666666777777777777776666666666777777777777666432   34455666666666655


Q ss_pred             cCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccc
Q 001313          721 EGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV  800 (1102)
Q Consensus       721 ~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~  800 (1102)
                      ++     +...++|+.|++++|.+.                       . ++. .+  .++|+.|++++|.+++  +..+
T Consensus       205 ~~-----l~~~~~L~~L~ls~n~l~-----------------------~-~~~-~~--~~~L~~L~L~~n~l~~--~~~l  250 (597)
T 3oja_B          205 ST-----LAIPIAVEELDASHNSIN-----------------------V-VRG-PV--NVELTILKLQHNNLTD--TAWL  250 (597)
T ss_dssp             SE-----EECCTTCSEEECCSSCCC-----------------------E-EEC-SC--CSCCCEEECCSSCCCC--CGGG
T ss_pred             cc-----ccCCchhheeeccCCccc-----------------------c-ccc-cc--CCCCCEEECCCCCCCC--Chhh
Confidence            43     223345555555555554                       2 222 11  2578888999998886  4678


Q ss_pred             cCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCc
Q 001313          801 DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDP  880 (1102)
Q Consensus       801 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  880 (1102)
                      ..+++|+.|+|++|.+++.+|..|..+++|+.|+|++|.+++. |..+..+                             
T Consensus       251 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l-----------------------------  300 (597)
T 3oja_B          251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPI-----------------------------  300 (597)
T ss_dssp             GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-ECSSSCC-----------------------------
T ss_pred             ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC-CcccccC-----------------------------
Confidence            8889999999999999988899999999999999999988763 3322222                             


Q ss_pred             cccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeC
Q 001313          881 KKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDL  960 (1102)
Q Consensus       881 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  960 (1102)
                                              +.|+.|+|++|.++ .+|..++.+++|+.|+|++|.+++..   +..+++|+.|+|
T Consensus       301 ------------------------~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l  352 (597)
T 3oja_B          301 ------------------------PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTL  352 (597)
T ss_dssp             ------------------------TTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEEC
T ss_pred             ------------------------CCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEe
Confidence                                    26899999999998 68888999999999999999999663   677889999999


Q ss_pred             CCCcCcccCchh
Q 001313          961 SYNKLSWKIPYQ  972 (1102)
Q Consensus       961 s~N~l~~~~p~~  972 (1102)
                      ++|.+++..+..
T Consensus       353 ~~N~~~~~~~~~  364 (597)
T 3oja_B          353 SHNDWDCNSLRA  364 (597)
T ss_dssp             CSSCEEHHHHHH
T ss_pred             eCCCCCChhHHH
Confidence            999999764433

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=1.2e-30  Score=294.92  Aligned_cols=304  Identities=26%  Similarity=0.352  Sum_probs=217.7

Q ss_pred             CCCcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcE
Q 001313          561 HKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRS  640 (1102)
Q Consensus       561 ~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~  640 (1102)
                      +++|+.|++++|.+. .+|. +. .+++|++|++++|.+++..+  +..+++|++|++++|+++ .+|.  +..+++|++
T Consensus        43 l~~L~~L~l~~~~i~-~~~~-~~-~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~  114 (347)
T 4fmz_A           43 LESITKLVVAGEKVA-SIQG-IE-YLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DISA--LQNLTNLRE  114 (347)
T ss_dssp             HTTCSEEECCSSCCC-CCTT-GG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCSE
T ss_pred             cccccEEEEeCCccc-cchh-hh-hcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-CchH--HcCCCcCCE
Confidence            445555555555554 3332 22 26667777777776664332  667777777777777776 4442  346777777


Q ss_pred             EEccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcc
Q 001313          641 LALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHI  720 (1102)
Q Consensus       641 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l  720 (1102)
                      |++++|.+++..+  +..+++|++|++++|......+ .+..+++|++|++++|.+.+..+  +..+++|+.|++++|.+
T Consensus       115 L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l  189 (347)
T 4fmz_A          115 LYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQI  189 (347)
T ss_dssp             EECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCC
T ss_pred             EECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcc
Confidence            7777777766544  6677788888888876554433 47788888888888888874433  77888888888888888


Q ss_pred             cCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccc
Q 001313          721 EGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV  800 (1102)
Q Consensus       721 ~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~  800 (1102)
                      ++..+  +..+++|+.|++++|.+.+.                        +  .+..+++|++|++++|++++..+  +
T Consensus       190 ~~~~~--~~~l~~L~~L~l~~n~l~~~------------------------~--~~~~~~~L~~L~l~~n~l~~~~~--~  239 (347)
T 4fmz_A          190 EDISP--LASLTSLHYFTAYVNQITDI------------------------T--PVANMTRLNSLKIGNNKITDLSP--L  239 (347)
T ss_dssp             CCCGG--GGGCTTCCEEECCSSCCCCC------------------------G--GGGGCTTCCEEECCSSCCCCCGG--G
T ss_pred             ccccc--ccCCCccceeecccCCCCCC------------------------c--hhhcCCcCCEEEccCCccCCCcc--h
Confidence            75443  77788888888888877632                        1  25566778888888888775443  7


Q ss_pred             cCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCc
Q 001313          801 DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDP  880 (1102)
Q Consensus       801 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  880 (1102)
                      ..+++|++|++++|++++.  ..+..+++|+.|++++|++++. | .+..+                             
T Consensus       240 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~~~~l-----------------------------  286 (347)
T 4fmz_A          240 ANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-S-VLNNL-----------------------------  286 (347)
T ss_dssp             TTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-G-GGGGC-----------------------------
T ss_pred             hcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC-h-hhcCC-----------------------------
Confidence            7788888888888888753  4577888888888888888753 2 22222                             


Q ss_pred             cccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeC
Q 001313          881 KKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDL  960 (1102)
Q Consensus       881 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  960 (1102)
                                              +.|+.|++++|++++..|..|+.+++|++|+|++|.+++..|  +..+++|+.||+
T Consensus       287 ------------------------~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l  340 (347)
T 4fmz_A          287 ------------------------SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADF  340 (347)
T ss_dssp             ------------------------TTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESS
T ss_pred             ------------------------CCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeeh
Confidence                                    268889999999988888889999999999999999998777  888999999999


Q ss_pred             CCCcCc
Q 001313          961 SYNKLS  966 (1102)
Q Consensus       961 s~N~l~  966 (1102)
                      ++|+|+
T Consensus       341 ~~N~i~  346 (347)
T 4fmz_A          341 ANQVIK  346 (347)
T ss_dssp             SCC---
T ss_pred             hhhccc
Confidence            999886

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.3e-29  Score=283.86  Aligned_cols=291  Identities=23%  Similarity=0.281  Sum_probs=202.0

Q ss_pred             CCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEc
Q 001313          612 FLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFL  691 (1102)
Q Consensus       612 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  691 (1102)
                      +++.++++++.++ .+|..+   .+.++.|++++|++++..+..+.++++|++|++++|.+++..|..|..+++|++|++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            3555555555555 455433   245666666666666655556666777777777777777666777777777777777


Q ss_pred             cCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCccccccc
Q 001313          692 SNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQL  771 (1102)
Q Consensus       692 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i  771 (1102)
                      ++|+++ .+|..+.  ++|++|++++|.+++..+..|..+++|+.|++++|.+...                     +..
T Consensus       108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------~~~  163 (330)
T 1xku_A          108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS---------------------GIE  163 (330)
T ss_dssp             CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG---------------------GBC
T ss_pred             CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc---------------------CcC
Confidence            777776 4554443  5777777877777776666777777777777777776421                     112


Q ss_pred             CcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccc
Q 001313          772 KEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNT  851 (1102)
Q Consensus       772 ~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~  851 (1102)
                      +. .|.++++|++|++++|.++. +|..+.  ++|++|++++|++++..|..+..+++|+.|++++|.+++..|..+..+
T Consensus       164 ~~-~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  239 (330)
T 1xku_A          164 NG-AFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT  239 (330)
T ss_dssp             TT-GGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred             hh-hccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCC
Confidence            22 66677777777777777774 444433  678888888888877777778888888888888888777666555544


Q ss_pred             cccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcC
Q 001313          852 TLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKI  931 (1102)
Q Consensus       852 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L  931 (1102)
                      +                                                     .|+.|+|++|+++ .+|..+..+++|
T Consensus       240 ~-----------------------------------------------------~L~~L~L~~N~l~-~lp~~l~~l~~L  265 (330)
T 1xku_A          240 P-----------------------------------------------------HLRELHLNNNKLV-KVPGGLADHKYI  265 (330)
T ss_dssp             T-----------------------------------------------------TCCEEECCSSCCS-SCCTTTTTCSSC
T ss_pred             C-----------------------------------------------------CCCEEECCCCcCc-cCChhhccCCCc
Confidence            3                                                     5777888888887 677788888888


Q ss_pred             CEEECCCCCCCCCCcccccCC------CcCCEEeCCCCcCcc--cCchhhhcCCCCCEEEcccCc
Q 001313          932 QTLNLSHNNLAGPIPSTFSNL------RNIESLDLSYNKLSW--KIPYQLVELNTLAVFSVAYNN  988 (1102)
Q Consensus       932 ~~L~Ls~N~l~~~~p~~~~~l------~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~l~ls~N~  988 (1102)
                      ++|+|++|+|++..+..|...      ..|+.|++++|.+..  ..|..|..+..++.+++++|+
T Consensus       266 ~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          266 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             CEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            888888888888777777543      678888888888863  556778888888888888874

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=7.5e-30  Score=285.78  Aligned_cols=288  Identities=23%  Similarity=0.269  Sum_probs=165.9

Q ss_pred             CCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEc
Q 001313          612 FLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFL  691 (1102)
Q Consensus       612 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  691 (1102)
                      .++.++++++.++ .+|..+   .++|+.|++++|.+++..+..+.++++|++|++++|.+++..|..|..+++|++|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            4555666666555 555443   245666666666666555555666666666666666666665666666666666666


Q ss_pred             cCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCccccc--CCCCCCCCccccEEEccCccccc
Q 001313          692 SNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISG--SLPSCYDFVCIEQVHLSKNMLHG  769 (1102)
Q Consensus       692 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~--~~p~~~~~~~L~~L~l~~n~l~~  769 (1102)
                      ++|+++ .+|..+.  ++|++|++++|++++..+..|..+++|+.|++++|.++.  ..|.                   
T Consensus       110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-------------------  167 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPG-------------------  167 (332)
T ss_dssp             CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTT-------------------
T ss_pred             CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcc-------------------
Confidence            666666 4444433  566666676666665555556666667666666666642  2222                   


Q ss_pred             ccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccc
Q 001313          770 QLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFD  849 (1102)
Q Consensus       770 ~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  849 (1102)
                           .|..+ +|++|++++|++++ +|..+.  ++|++|++++|++++..|..+..+++|+.|++++|++++..|..+.
T Consensus       168 -----~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~  238 (332)
T 2ft3_A          168 -----AFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS  238 (332)
T ss_dssp             -----SSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG
T ss_pred             -----cccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh
Confidence                 33333 45555555555543 333222  4555555555555555555555555555555555555554444443


Q ss_pred             cccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCC
Q 001313          850 NTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLT  929 (1102)
Q Consensus       850 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~  929 (1102)
                      .++                                                     .|+.|+|++|+++ .+|..+..++
T Consensus       239 ~l~-----------------------------------------------------~L~~L~L~~N~l~-~lp~~l~~l~  264 (332)
T 2ft3_A          239 FLP-----------------------------------------------------TLRELHLDNNKLS-RVPAGLPDLK  264 (332)
T ss_dssp             GCT-----------------------------------------------------TCCEEECCSSCCC-BCCTTGGGCT
T ss_pred             CCC-----------------------------------------------------CCCEEECCCCcCe-ecChhhhcCc
Confidence            332                                                     4555666666665 5566666666


Q ss_pred             cCCEEECCCCCCCCCCcccccCC------CcCCEEeCCCCcCc--ccCchhhhcCCCCCEEEcccCc
Q 001313          930 KIQTLNLSHNNLAGPIPSTFSNL------RNIESLDLSYNKLS--WKIPYQLVELNTLAVFSVAYNN  988 (1102)
Q Consensus       930 ~L~~L~Ls~N~l~~~~p~~~~~l------~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~l~ls~N~  988 (1102)
                      +|++|++++|.+++..+..|...      ..|+.|++++|.+.  +..|..|..++.|+.+++++|+
T Consensus       265 ~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          265 LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             TCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             cCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            66666666666666666655543      45667777777666  4556666667777777776663

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=3.1e-29  Score=280.60  Aligned_cols=252  Identities=22%  Similarity=0.301  Sum_probs=155.9

Q ss_pred             CCcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEE
Q 001313          562 KQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSL  641 (1102)
Q Consensus       562 ~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L  641 (1102)
                      .+++.++++++.++ .+|..+   .+++++|++++|++++..+..|.++++|++|++++|++++..|..+ ..+++|++|
T Consensus        31 c~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L  105 (330)
T 1xku_A           31 CHLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF-APLVKLERL  105 (330)
T ss_dssp             EETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT-TTCTTCCEE
T ss_pred             CCCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHh-cCCCCCCEE
Confidence            36777777777776 566544   3567777777777776666667777777777777776663333332 345555555


Q ss_pred             EccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCccc
Q 001313          642 ALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIE  721 (1102)
Q Consensus       642 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~  721 (1102)
                      ++++|+++.                         +|..+.  ++|++|++++|++++..+..+.++++|+.|++++|.++
T Consensus       106 ~Ls~n~l~~-------------------------l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  158 (330)
T 1xku_A          106 YLSKNQLKE-------------------------LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK  158 (330)
T ss_dssp             ECCSSCCSB-------------------------CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCC
T ss_pred             ECCCCcCCc-------------------------cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCC
Confidence            555555442                         232222  45566666666665555555566666666666666553


Q ss_pred             C--CCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCcc
Q 001313          722 G--PIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDR  799 (1102)
Q Consensus       722 ~--~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~  799 (1102)
                      .  ..+..+..+++|+.|++++|.++. +|.... ++|++|++++|++.+..|. .|..+++|+.|++++|++++..+..
T Consensus       159 ~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~-~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~  235 (330)
T 1xku_A          159 SSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP-PSLTELHLDGNKITKVDAA-SLKGLNNLAKLGLSFNSISAVDNGS  235 (330)
T ss_dssp             GGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC-TTCSEEECTTSCCCEECTG-GGTTCTTCCEEECCSSCCCEECTTT
T ss_pred             ccCcChhhccCCCCcCEEECCCCcccc-CCcccc-ccCCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCcCceeChhh
Confidence            2  455566666666666666666653 222221 4555555555555544344 6777777777777777777766667


Q ss_pred             ccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccc
Q 001313          800 VDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFD  849 (1102)
Q Consensus       800 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  849 (1102)
                      +..+++|++|+|++|+++ .+|..+..+++|++|++++|++++..+..|.
T Consensus       236 ~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~  284 (330)
T 1xku_A          236 LANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC  284 (330)
T ss_dssp             GGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred             ccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcC
Confidence            777777777777777777 6676777777777777777777765555443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=2.3e-29  Score=281.78  Aligned_cols=250  Identities=27%  Similarity=0.318  Sum_probs=148.8

Q ss_pred             CcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEE
Q 001313          563 QLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLA  642 (1102)
Q Consensus       563 ~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~  642 (1102)
                      +++.++++++.++ .+|..+   .++|++|++++|.+++..|..|.++++|++|++++|+++                  
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~------------------   91 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS------------------   91 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC------------------
T ss_pred             cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC------------------
Confidence            4566666666665 555544   245666666666666555555666666666666666555                  


Q ss_pred             ccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCccc-
Q 001313          643 LSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIE-  721 (1102)
Q Consensus       643 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~-  721 (1102)
                             +..+..+.++++|++|++++|.++ .+|..+.  ++|++|++++|++++..+..+..+++|+.|++++|.++ 
T Consensus        92 -------~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~  161 (332)
T 2ft3_A           92 -------KIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN  161 (332)
T ss_dssp             -------EECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG
T ss_pred             -------ccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc
Confidence                   333344444455555555555444 2333222  45666666666665444445566666666666666654 


Q ss_pred             -CCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccc
Q 001313          722 -GPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV  800 (1102)
Q Consensus       722 -~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~  800 (1102)
                       +..+..+..+ +|+.|++++|++++ +|.... ++|++|++++|.+.+..+. .|.++++|+.|++++|++++..+..+
T Consensus       162 ~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~-~~L~~L~l~~n~i~~~~~~-~l~~l~~L~~L~L~~N~l~~~~~~~~  237 (332)
T 2ft3_A          162 SGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP-ETLNELHLDHNKIQAIELE-DLLRYSKLYRLGLGHNQIRMIENGSL  237 (332)
T ss_dssp             GGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC-SSCSCCBCCSSCCCCCCTT-SSTTCTTCSCCBCCSSCCCCCCTTGG
T ss_pred             CCCCcccccCC-ccCEEECcCCCCCc-cCcccc-CCCCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCcCCcCChhHh
Confidence             2455555555 66666666666654 232221 4555555555555543333 67777777777777777777666677


Q ss_pred             cCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccc
Q 001313          801 DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFD  849 (1102)
Q Consensus       801 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  849 (1102)
                      ..+++|++|++++|+++ .+|..+..+++|+.|++++|++++..+..|.
T Consensus       238 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~  285 (332)
T 2ft3_A          238 SFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFC  285 (332)
T ss_dssp             GGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSS
T ss_pred             hCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcc
Confidence            77777777777777777 6676777777777777777777765555544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=4.2e-33  Score=328.55  Aligned_cols=363  Identities=19%  Similarity=0.137  Sum_probs=247.5

Q ss_pred             CCcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccc----cCCcccCCCCCCcEEEccCcccccccchhHhhcCC-
Q 001313          562 KQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDG----SIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCV-  636 (1102)
Q Consensus       562 ~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~-  636 (1102)
                      ++|++||+++|+++......++..+++|++|++++|.++.    .++..+..+++|++|++++|++++..+..++..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            5678888888888744444445558899999999998874    34667788899999999999887655666665666 


Q ss_pred             ---CCcEEEccccccCC----cccccccCCCccCeeeccCccCcccCCCCc-----CCCCCCcEEEccCCcCCCCC----
Q 001313          637 ---SLRSLALSNNNLEG----HMFSRNFNLTNLIWLQLEGNHFVGEIPQSL-----SKCSSLQGLFLSNNSLSGKI----  700 (1102)
Q Consensus       637 ---~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~----  700 (1102)
                         +|++|++++|.++.    .++..+..+++|++|++++|.+++..+..+     ...++|++|++++|++++..    
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               68888888888874    446667777888888888887764333222     22456777777777776532    


Q ss_pred             CccccCCCCccEEECCCCcccCCCccccc-----CCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCccc
Q 001313          701 PRWLGNLTVLRHIIMPKNHIEGPIPLEFC-----QLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGT  775 (1102)
Q Consensus       701 p~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~  775 (1102)
                      +..+..+++|++|++++|.+++..+..+.     ..++|++|++++|.+++...                   ..++. .
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~-------------------~~l~~-~  222 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC-------------------RDLCG-I  222 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH-------------------HHHHH-H
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHH-------------------HHHHH-H
Confidence            44455566777777777766544333332     24466666666665542100                   01344 5


Q ss_pred             ccCccCccEEEccCccCcccC-----CccccCCCCCCEEEccCcccccc----CchhhcCCCCCCEEECcCccCCCCCCc
Q 001313          776 FFNCLTLMILDLSYNHLNGNI-----PDRVDGLSQLSYLILAHNNLEGE----VPIQLCRLNQLQLLDLSNNNLHGHIPS  846 (1102)
Q Consensus       776 ~~~~~~L~~L~Ls~n~l~~~~-----p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~  846 (1102)
                      +..+++|++|++++|.+++..     +..+..+++|++|++++|++++.    ++..+..+++|++|++++|.+++..+.
T Consensus       223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~  302 (461)
T 1z7x_W          223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR  302 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred             HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence            667778888888888776532     23334577888888888888754    566777788888888888877643332


Q ss_pred             ccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCC----Cc
Q 001313          847 CFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGH----IP  922 (1102)
Q Consensus       847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~----ip  922 (1102)
                      .+...-                                                ....+.|+.|+|++|.+++.    +|
T Consensus       303 ~l~~~l------------------------------------------------~~~~~~L~~L~L~~n~l~~~~~~~l~  334 (461)
T 1z7x_W          303 LLCETL------------------------------------------------LEPGCQLESLWVKSCSFTAACCSHFS  334 (461)
T ss_dssp             HHHHHH------------------------------------------------TSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             HHHHHh------------------------------------------------ccCCccceeeEcCCCCCchHHHHHHH
Confidence            222110                                                00012578888888888765    46


Q ss_pred             ccccCCCcCCEEECCCCCCCCCCcccccC-----CCcCCEEeCCCCcCcc----cCchhhhcCCCCCEEEcccCcCccc
Q 001313          923 PQIGNLTKIQTLNLSHNNLAGPIPSTFSN-----LRNIESLDLSYNKLSW----KIPYQLVELNTLAVFSVAYNNLSGK  992 (1102)
Q Consensus       923 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~l~ls~N~l~~~  992 (1102)
                      ..+..+++|++|+|++|.+++..+..+..     .++|+.|+|++|++++    .+|..+..+++|++|++++|++++.
T Consensus       335 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence            66777788888888888888665555543     5688888888888886    7788888888888888888888753

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=2.7e-32  Score=321.58  Aligned_cols=309  Identities=18%  Similarity=0.121  Sum_probs=176.4

Q ss_pred             CcccEEEeccccCCCCCChhhhhcCCCCcEEEccCCCCcCC----CcCCCCCCCCcCEEEccCCcCCCCCCchhhhcCC-
Q 001313          513 HDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGP----FRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILS-  587 (1102)
Q Consensus       513 ~~L~~L~ls~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~-  587 (1102)
                      ++++.|+++++.+.......++..+++|++|++++|.+...    .+..+..+++|++|++++|.+.+..+..++..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            46788999998887665555577888999999999987643    2334556788999999998887555555555455 


Q ss_pred             ---CCcEEEccCCcccc----cCCcccCCCCCCcEEEccCcccccccchhHhh----cCCCCcEEEccccccCCcc----
Q 001313          588 ---RLTVFNISMNALDG----SIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAM----GCVSLRSLALSNNNLEGHM----  652 (1102)
Q Consensus       588 ---~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~----~l~~L~~L~L~~n~l~~~~----  652 (1102)
                         +|++|++++|+++.    .++..+..+++|++|++++|++++..+..+..    ..++|++|++++|.+++..    
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               68899999988874    45778888888999999888887544443332    2346777777777776533    


Q ss_pred             cccccCCCccCeeeccCccCcccCCCCcC-----CCCCCcEEEccCCcCCCC----CCccccCCCCccEEECCCCcccCC
Q 001313          653 FSRNFNLTNLIWLQLEGNHFVGEIPQSLS-----KCSSLQGLFLSNNSLSGK----IPRWLGNLTVLRHIIMPKNHIEGP  723 (1102)
Q Consensus       653 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~  723 (1102)
                      +..+..+++|++|++++|.+....+..+.     ..++|++|++++|.+++.    ++..+..+++|++|++++|.+++.
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  242 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  242 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence            33334455666666666655433222221     133555555555555432    233344444444444444444322


Q ss_pred             C-----cccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCc
Q 001313          724 I-----PLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPD  798 (1102)
Q Consensus       724 ~-----~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~  798 (1102)
                      .     +..+..+++|++|++++|.+++.-.                   ..++. .+.++++|++|++++|.+++..+.
T Consensus       243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~-------------------~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~  302 (461)
T 1z7x_W          243 GMAELCPGLLHPSSRLRTLWIWECGITAKGC-------------------GDLCR-VLRAKESLKELSLAGNELGDEGAR  302 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHH-------------------HHHHH-HHHHCTTCCEEECTTCCCHHHHHH
T ss_pred             HHHHHHHHHhcCCCCceEEECcCCCCCHHHH-------------------HHHHH-HHhhCCCcceEECCCCCCchHHHH
Confidence            1     1111123334444444433321000                   00333 444555666666666655543322


Q ss_pred             ccc-----CCCCCCEEEccCcccccc----CchhhcCCCCCCEEECcCccCC
Q 001313          799 RVD-----GLSQLSYLILAHNNLEGE----VPIQLCRLNQLQLLDLSNNNLH  841 (1102)
Q Consensus       799 ~~~-----~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~  841 (1102)
                      .+.     ..++|++|++++|.+++.    ++..+..+++|++||+++|.++
T Consensus       303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  354 (461)
T 1z7x_W          303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE  354 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCH
T ss_pred             HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccc
Confidence            222     124566666666665543    3444455556666666665554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=1.8e-28  Score=277.06  Aligned_cols=210  Identities=24%  Similarity=0.225  Sum_probs=149.6

Q ss_pred             CCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcE
Q 001313          609 NMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQG  688 (1102)
Q Consensus       609 ~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  688 (1102)
                      .|+.....+++++.++ .+|..++   ++|++|++++|.+++..+..+.++++|++|++++|.+++..|..|..+++|++
T Consensus        29 ~C~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  104 (353)
T 2z80_A           29 SCDRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH  104 (353)
T ss_dssp             EECTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             CCCCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence            3445556677777777 6776543   46777777777777666666677777777777777777666667777777777


Q ss_pred             EEccCCcCCCCCCccccCCCCccEEECCCCcccCCCc-ccccCCCcccEEEccCcc-cccCCCCCCCCccccEEEccCcc
Q 001313          689 LFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIP-LEFCQLRILQILDISDNN-ISGSLPSCYDFVCIEQVHLSKNM  766 (1102)
Q Consensus       689 L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~ls~n~-l~~~~p~~~~~~~L~~L~l~~n~  766 (1102)
                      |++++|++++..+..++++++|++|++++|++++..+ ..+..+++|++|++++|+ +.                     
T Consensus       105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~---------------------  163 (353)
T 2z80_A          105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT---------------------  163 (353)
T ss_dssp             EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC---------------------
T ss_pred             EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc---------------------
Confidence            7777777775444446777777777777777764333 356666777777766663 32                     


Q ss_pred             cccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCc
Q 001313          767 LHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPS  846 (1102)
Q Consensus       767 l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  846 (1102)
                         .++...|.++++|++|++++|++++..|..+..+++|++|++++|+++...+..+..+++|+.|++++|.+++..+.
T Consensus       164 ---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  240 (353)
T 2z80_A          164 ---KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFS  240 (353)
T ss_dssp             ---EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC
T ss_pred             ---ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccc
Confidence               34333778888889999999998888888888889999999999988744444455688899999999888765543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=5.4e-28  Score=267.51  Aligned_cols=273  Identities=21%  Similarity=0.259  Sum_probs=184.0

Q ss_pred             eeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCC--CcccccCCCcccEEEccC
Q 001313          664 WLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGP--IPLEFCQLRILQILDISD  741 (1102)
Q Consensus       664 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~ls~  741 (1102)
                      .++.+++.++ .+|..+.  ++|++|++++|+++...+..|.++++|++|++++|.++..  .+..+..+++|++|++++
T Consensus        11 ~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~   87 (306)
T 2z66_A           11 EIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF   87 (306)
T ss_dssp             EEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred             EEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence            4444554444 3333322  4566666666666633333456666666666666665522  244455566666666666


Q ss_pred             cccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCC-ccccCCCCCCEEEccCccccccC
Q 001313          742 NNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIP-DRVDGLSQLSYLILAHNNLEGEV  820 (1102)
Q Consensus       742 n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~  820 (1102)
                      |.+.                        .+|. .+..+++|++|++++|++++..+ ..+..+++|++|++++|++++..
T Consensus        88 n~i~------------------------~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  142 (306)
T 2z66_A           88 NGVI------------------------TMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF  142 (306)
T ss_dssp             CSEE------------------------EEEE-EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS
T ss_pred             Cccc------------------------cChh-hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc
Confidence            6554                        2444 46667777777777777776554 56777777888888888777777


Q ss_pred             chhhcCCCCCCEEECcCccCCC-CCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeec
Q 001313          821 PIQLCRLNQLQLLDLSNNNLHG-HIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTY  899 (1102)
Q Consensus       821 p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  899 (1102)
                      |..+..+++|++|++++|.+++ .+|..+..++                                               
T Consensus       143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-----------------------------------------------  175 (306)
T 2z66_A          143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR-----------------------------------------------  175 (306)
T ss_dssp             TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT-----------------------------------------------
T ss_pred             hhhcccCcCCCEEECCCCccccccchhHHhhCc-----------------------------------------------
Confidence            7777778888888888887765 4555554433                                               


Q ss_pred             cCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCC-C
Q 001313          900 QGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELN-T  978 (1102)
Q Consensus       900 ~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~  978 (1102)
                            .|+.|+|++|++++..|..|..+++|++|+|++|.+++..+..|..+++|+.|||++|++++..|..+..++ +
T Consensus       176 ------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~  249 (306)
T 2z66_A          176 ------NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS  249 (306)
T ss_dssp             ------TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTT
T ss_pred             ------CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhcc
Confidence                  577888888888877788888888888888888888888787888888899999999988888888888874 8


Q ss_pred             CCEEEcccCcCcccCCcc--ccccCCCCccccCCCCCCCCC
Q 001313          979 LAVFSVAYNNLSGKIPER--AAQFATFNESSYEGNPFLCGP 1017 (1102)
Q Consensus       979 L~~l~ls~N~l~~~~p~~--~~~~~~~~~~~~~gN~~lC~~ 1017 (1102)
                      |++|++++|+++|.++..  ..++..........+...|..
T Consensus       250 L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~  290 (306)
T 2z66_A          250 LAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECAT  290 (306)
T ss_dssp             CCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEE
T ss_pred             CCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCC
Confidence            889999999888765421  122333333344455556654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=7.3e-28  Score=272.16  Aligned_cols=281  Identities=19%  Similarity=0.193  Sum_probs=223.7

Q ss_pred             cCCCCcEEEccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEE
Q 001313          634 GCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHI  713 (1102)
Q Consensus       634 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  713 (1102)
                      .|+.....+.+++.++.+.. .+  .++|++|++++|.+++..+..+..+++|++|++++|++++..|..|.++++|++|
T Consensus        29 ~C~~~~~c~~~~~~l~~iP~-~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           29 SCDRNGICKGSSGSLNSIPS-GL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             EECTTSEEECCSTTCSSCCT-TC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCeEeeCCCCCcccccc-cc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence            34555667788888776543 22  2478888888888887666678888888888888888887777778888888888


Q ss_pred             ECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCc-ccccCccCccEEEccCc-c
Q 001313          714 IMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKE-GTFFNCLTLMILDLSYN-H  791 (1102)
Q Consensus       714 ~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~-~~~~~~~~L~~L~Ls~n-~  791 (1102)
                      ++++|++++..+..|.++++|++|++++|+++                        .+|. ..|.++++|++|++++| .
T Consensus       106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~------------------------~l~~~~~~~~l~~L~~L~l~~n~~  161 (353)
T 2z80_A          106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK------------------------TLGETSLFSHLTKLQILRVGNMDT  161 (353)
T ss_dssp             ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS------------------------SSCSSCSCTTCTTCCEEEEEESSS
T ss_pred             ECCCCcCCcCCHhHhCCCccCCEEECCCCCCc------------------------ccCchhhhccCCCCcEEECCCCcc
Confidence            88888887665556777888888888877765                        2343 46888999999999999 5


Q ss_pred             CcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhh
Q 001313          792 LNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFV  871 (1102)
Q Consensus       792 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  871 (1102)
                      +++..|..+.++++|++|++++|++++..|..+..+++|++|++++|.++...+..+..+                    
T Consensus       162 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~--------------------  221 (353)
T 2z80_A          162 FTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVT--------------------  221 (353)
T ss_dssp             CCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHT--------------------
T ss_pred             ccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhc--------------------
Confidence            777778899999999999999999999999999999999999999999863322222211                    


Q ss_pred             hcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCccccc---CCCcCCEEECCCCCCCC----C
Q 001313          872 IMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIG---NLTKIQTLNLSHNNLAG----P  944 (1102)
Q Consensus       872 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~---~l~~L~~L~Ls~N~l~~----~  944 (1102)
                                                       +.|+.|++++|++++..+..+.   ..+.++.++|++|.+++    .
T Consensus       222 ---------------------------------~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~  268 (353)
T 2z80_A          222 ---------------------------------SSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ  268 (353)
T ss_dssp             ---------------------------------TTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHH
T ss_pred             ---------------------------------ccccEEECCCCccccccccccccccccchhhccccccccccCcchhh
Confidence                                             2689999999999987665543   46778999999999987    4


Q ss_pred             CcccccCCCcCCEEeCCCCcCcccCchh-hhcCCCCCEEEcccCcCcccCCc
Q 001313          945 IPSTFSNLRNIESLDLSYNKLSWKIPYQ-LVELNTLAVFSVAYNNLSGKIPE  995 (1102)
Q Consensus       945 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~l~ls~N~l~~~~p~  995 (1102)
                      +|..+..+++|+.|||++|+++ .+|.. |..+++|++|++++|++.|.+|.
T Consensus       269 l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~  319 (353)
T 2z80_A          269 VMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR  319 (353)
T ss_dssp             HHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             hHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence            7888999999999999999999 56655 68999999999999999998875

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=2.6e-27  Score=262.01  Aligned_cols=169  Identities=22%  Similarity=0.299  Sum_probs=105.2

Q ss_pred             cccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccc-cCchhhcCCCCCCEEECcCccCCCCCCcccccccc
Q 001313          775 TFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEG-EVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTL  853 (1102)
Q Consensus       775 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~  853 (1102)
                      .+..+++|++|++++|.+++..|..+..+++|++|++++|++++ .+|..+..+++|++|++++|.+++..|..|..++ 
T Consensus       121 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-  199 (306)
T 2z66_A          121 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS-  199 (306)
T ss_dssp             TTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT-
T ss_pred             hhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCC-
Confidence            34445555555555555555555555556666666666666654 3555566666666666666666655555544332 


Q ss_pred             cccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCE
Q 001313          854 HERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQT  933 (1102)
Q Consensus       854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~  933 (1102)
                                                                          .|+.|+|++|++++..+..+..+++|++
T Consensus       200 ----------------------------------------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~  227 (306)
T 2z66_A          200 ----------------------------------------------------SLQVLNMSHNNFFSLDTFPYKCLNSLQV  227 (306)
T ss_dssp             ----------------------------------------------------TCCEEECTTSCCSBCCSGGGTTCTTCCE
T ss_pred             ----------------------------------------------------CCCEEECCCCccCccChhhccCcccCCE
Confidence                                                                4666666666666666666777788888


Q ss_pred             EECCCCCCCCCCcccccCC-CcCCEEeCCCCcCcccCch--hhhcCCCCCEEEcccCcCcccCCcc
Q 001313          934 LNLSHNNLAGPIPSTFSNL-RNIESLDLSYNKLSWKIPY--QLVELNTLAVFSVAYNNLSGKIPER  996 (1102)
Q Consensus       934 L~Ls~N~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~l~ls~N~l~~~~p~~  996 (1102)
                      |+|++|++++.+|..+..+ ++|+.|+|++|.+++..+.  ...-+...+.+.+..+.+.|..|..
T Consensus       228 L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~  293 (306)
T 2z66_A          228 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD  293 (306)
T ss_dssp             EECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGG
T ss_pred             eECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchh
Confidence            8888888888888888877 4788888888888764321  1111223334455667777777763

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=9.8e-27  Score=258.76  Aligned_cols=235  Identities=19%  Similarity=0.268  Sum_probs=154.3

Q ss_pred             CCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEE
Q 001313          658 NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQIL  737 (1102)
Q Consensus       658 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  737 (1102)
                      ..++++.|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|.++ .+|..+..+++|++|
T Consensus        79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L  155 (328)
T 4fcg_A           79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL  155 (328)
T ss_dssp             TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred             cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence            3567888888888887 67777888888888888888888 78888888888888888888887 677778888888888


Q ss_pred             EccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCcccc
Q 001313          738 DISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLE  817 (1102)
Q Consensus       738 ~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~  817 (1102)
                      ++++|++.+.+|..+..          .    .++. .|.++++|++|++++|+++ .+|..++.+++|++|+|++|+++
T Consensus       156 ~L~~n~~~~~~p~~~~~----------~----~~~~-~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~  219 (328)
T 4fcg_A          156 SIRACPELTELPEPLAS----------T----DASG-EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS  219 (328)
T ss_dssp             EEEEETTCCCCCSCSEE----------E----C-CC-CEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred             ECCCCCCccccChhHhh----------c----cchh-hhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence            88887777666653311          0    0111 3444555555555555554 44444555555555555555544


Q ss_pred             ccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceee
Q 001313          818 GEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITY  897 (1102)
Q Consensus       818 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  897 (1102)
                      + +|..+..+++                                                                    
T Consensus       220 ~-l~~~l~~l~~--------------------------------------------------------------------  230 (328)
T 4fcg_A          220 A-LGPAIHHLPK--------------------------------------------------------------------  230 (328)
T ss_dssp             C-CCGGGGGCTT--------------------------------------------------------------------
T ss_pred             c-CchhhccCCC--------------------------------------------------------------------
Confidence            2 3333444444                                                                    


Q ss_pred             eccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCC
Q 001313          898 TYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELN  977 (1102)
Q Consensus       898 ~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  977 (1102)
                               |+.|+|++|++.+.+|..|+.+++|++|+|++|++.+.+|..|+++++|+.|||++|++.+.+|..+.+++
T Consensus       231 ---------L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~  301 (328)
T 4fcg_A          231 ---------LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP  301 (328)
T ss_dssp             ---------CCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSC
T ss_pred             ---------CCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhcc
Confidence                     45555555555555666666666666666666666666666666666677777777666666777676777


Q ss_pred             CCCEEEcccCcC
Q 001313          978 TLAVFSVAYNNL  989 (1102)
Q Consensus       978 ~L~~l~ls~N~l  989 (1102)
                      +|+.+++..|.+
T Consensus       302 ~L~~l~l~~~~~  313 (328)
T 4fcg_A          302 ANCIILVPPHLQ  313 (328)
T ss_dssp             TTCEEECCGGGS
T ss_pred             CceEEeCCHHHH
Confidence            776666665543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=2.6e-26  Score=267.58  Aligned_cols=251  Identities=22%  Similarity=0.225  Sum_probs=206.9

Q ss_pred             cCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccC
Q 001313          662 LIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISD  741 (1102)
Q Consensus       662 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~  741 (1102)
                      ...++.+++.++ .+|..+.  ++++.|++++|++++..+..|.++++|+.|++++|.+++..+..|.++++|++|+|++
T Consensus        45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            456677776666 4555443  5677777777777776667777777777777777777776667777777777777777


Q ss_pred             cccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCcc-ccccC
Q 001313          742 NNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNN-LEGEV  820 (1102)
Q Consensus       742 n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~  820 (1102)
                      |+++                        .+|...|.++++|++|++++|++++..+..|..+++|++|+|++|+ +....
T Consensus       122 n~l~------------------------~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~  177 (440)
T 3zyj_A          122 NRLT------------------------TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS  177 (440)
T ss_dssp             SCCS------------------------SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred             CcCC------------------------eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeC
Confidence            7665                        3555478899999999999999998888899999999999999954 55444


Q ss_pred             chhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeecc
Q 001313          821 PIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQ  900 (1102)
Q Consensus       821 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  900 (1102)
                      +..|.++++|++|++++|.++. +|. +..+                                                 
T Consensus       178 ~~~~~~l~~L~~L~L~~n~l~~-~~~-~~~l-------------------------------------------------  206 (440)
T 3zyj_A          178 EGAFEGLSNLRYLNLAMCNLRE-IPN-LTPL-------------------------------------------------  206 (440)
T ss_dssp             TTTTTTCSSCCEEECTTSCCSS-CCC-CTTC-------------------------------------------------
T ss_pred             cchhhcccccCeecCCCCcCcc-ccc-cCCC-------------------------------------------------
Confidence            5579999999999999999983 332 2221                                                 


Q ss_pred             CCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCC
Q 001313          901 GRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLA  980 (1102)
Q Consensus       901 ~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  980 (1102)
                          +.|+.|+|++|++++..|..|.++++|+.|+|++|++++..|..|.++++|+.|||++|+|++..+..+..+++|+
T Consensus       207 ----~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  282 (440)
T 3zyj_A          207 ----IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE  282 (440)
T ss_dssp             ----SSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCC
T ss_pred             ----cccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCC
Confidence                2689999999999999999999999999999999999999999999999999999999999988888899999999


Q ss_pred             EEEcccCcCcccCC
Q 001313          981 VFSVAYNNLSGKIP  994 (1102)
Q Consensus       981 ~l~ls~N~l~~~~p  994 (1102)
                      .|++++|++.|.+.
T Consensus       283 ~L~L~~Np~~CdC~  296 (440)
T 3zyj_A          283 RIHLHHNPWNCNCD  296 (440)
T ss_dssp             EEECCSSCEECSST
T ss_pred             EEEcCCCCccCCCC
Confidence            99999999998765

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=3e-26  Score=268.03  Aligned_cols=252  Identities=20%  Similarity=0.167  Sum_probs=201.6

Q ss_pred             cCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccC
Q 001313          662 LIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISD  741 (1102)
Q Consensus       662 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~  741 (1102)
                      ...++.+++.++ .+|..+.  +++++|++++|++++..|..|.++++|+.|++++|.+++..+..|.++++|++|+|++
T Consensus        56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            345666666665 3444433  4667777777777666666666777777777777776666666666666666666666


Q ss_pred             cccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCc-cccccC
Q 001313          742 NNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHN-NLEGEV  820 (1102)
Q Consensus       742 n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~  820 (1102)
                      |+++                        .+|...|.++++|++|++++|++++..+..|..+++|+.|++++| .+....
T Consensus       133 n~l~------------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~  188 (452)
T 3zyi_A          133 NWLT------------------------VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS  188 (452)
T ss_dssp             SCCS------------------------BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred             CcCC------------------------ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccC
Confidence            6655                        355547889999999999999999888889999999999999995 555444


Q ss_pred             chhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeecc
Q 001313          821 PIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQ  900 (1102)
Q Consensus       821 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  900 (1102)
                      +..|..+++|++|+|++|++++. |. +..+                                                 
T Consensus       189 ~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l-------------------------------------------------  217 (452)
T 3zyi_A          189 EGAFEGLFNLKYLNLGMCNIKDM-PN-LTPL-------------------------------------------------  217 (452)
T ss_dssp             TTTTTTCTTCCEEECTTSCCSSC-CC-CTTC-------------------------------------------------
T ss_pred             hhhccCCCCCCEEECCCCccccc-cc-cccc-------------------------------------------------
Confidence            55799999999999999999854 32 2221                                                 


Q ss_pred             CCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCC
Q 001313          901 GRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLA  980 (1102)
Q Consensus       901 ~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  980 (1102)
                          +.|+.|+|++|++++..|..|.++++|+.|+|++|++++..|..|.++++|+.|||++|+|++..+..+..+++|+
T Consensus       218 ----~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  293 (452)
T 3zyi_A          218 ----VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV  293 (452)
T ss_dssp             ----TTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCC
T ss_pred             ----ccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCC
Confidence                2689999999999999999999999999999999999999999999999999999999999988888899999999


Q ss_pred             EEEcccCcCcccCCc
Q 001313          981 VFSVAYNNLSGKIPE  995 (1102)
Q Consensus       981 ~l~ls~N~l~~~~p~  995 (1102)
                      .|++++|++.|.+..
T Consensus       294 ~L~L~~Np~~CdC~~  308 (452)
T 3zyi_A          294 ELHLHHNPWNCDCDI  308 (452)
T ss_dssp             EEECCSSCEECSTTT
T ss_pred             EEEccCCCcCCCCCc
Confidence            999999999987653

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=4.4e-26  Score=266.64  Aligned_cols=250  Identities=23%  Similarity=0.232  Sum_probs=220.8

Q ss_pred             CCcEEEccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECC
Q 001313          637 SLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMP  716 (1102)
Q Consensus       637 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  716 (1102)
                      ....++.++..++.+. ..+  .+++++|+|++|.+++..+..|..+++|++|++++|++++..|..|.++++|++|+++
T Consensus        55 ~~~~v~c~~~~l~~iP-~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           55 QFSKVVCTRRGLSEVP-QGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SSCEEECCSSCCSSCC-SCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCcEEEECCCCcCccC-CCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            4567888888887643 333  3689999999999999989999999999999999999998888999999999999999


Q ss_pred             CCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccC-ccCccc
Q 001313          717 KNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSY-NHLNGN  795 (1102)
Q Consensus       717 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~-n~l~~~  795 (1102)
                      +|++++..+..|..+++|++|++++|+++                        .+|...|.++++|+.|++++ |.+...
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~------------------------~~~~~~~~~l~~L~~L~l~~~~~l~~i  187 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIE------------------------SIPSYAFNRVPSLMRLDLGELKKLEYI  187 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCC------------------------EECTTTTTTCTTCCEEECCCCTTCCEE
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcc------------------------eeCHhHHhcCCcccEEeCCCCCCcccc
Confidence            99999888888999999999999999886                        34555788999999999999 455555


Q ss_pred             CCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCC
Q 001313          796 IPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGG  875 (1102)
Q Consensus       796 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  875 (1102)
                      .+..|.++++|++|+|++|++++. | .+..+++|+.|+|++|++++..|..|.+++                       
T Consensus       188 ~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----------------------  242 (452)
T 3zyi_A          188 SEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLS-----------------------  242 (452)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCT-----------------------
T ss_pred             ChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCcc-----------------------
Confidence            556799999999999999999954 4 588899999999999999998888877655                       


Q ss_pred             ccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcC
Q 001313          876 MDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNI  955 (1102)
Q Consensus       876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  955 (1102)
                                                    .|+.|+|++|++++..|..|..+++|+.|+|++|+|++..+..|..+++|
T Consensus       243 ------------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  292 (452)
T 3zyi_A          243 ------------------------------SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL  292 (452)
T ss_dssp             ------------------------------TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred             ------------------------------CCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCC
Confidence                                          68999999999999999999999999999999999999999999999999


Q ss_pred             CEEeCCCCcCccc
Q 001313          956 ESLDLSYNKLSWK  968 (1102)
Q Consensus       956 ~~L~Ls~N~l~~~  968 (1102)
                      +.|+|++|.+...
T Consensus       293 ~~L~L~~Np~~Cd  305 (452)
T 3zyi_A          293 VELHLHHNPWNCD  305 (452)
T ss_dssp             CEEECCSSCEECS
T ss_pred             CEEEccCCCcCCC
Confidence            9999999998753

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=2.1e-26  Score=256.11  Aligned_cols=189  Identities=20%  Similarity=0.231  Sum_probs=161.3

Q ss_pred             cCCCCcEEEccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEE
Q 001313          634 GCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHI  713 (1102)
Q Consensus       634 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  713 (1102)
                      ....++.|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|
T Consensus        79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L  155 (328)
T 4fcg_A           79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL  155 (328)
T ss_dssp             TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred             cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence            3578999999999999 55677888999999999999999 88999999999999999999999 889999999999999


Q ss_pred             ECCCCcccCCCcccccC---------CCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccE
Q 001313          714 IMPKNHIEGPIPLEFCQ---------LRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMI  784 (1102)
Q Consensus       714 ~l~~n~l~~~~~~~~~~---------l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~  784 (1102)
                      ++++|++.+.+|..+..         +++|++|++++|++                       + .+|. .+.++++|++
T Consensus       156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l-----------------------~-~lp~-~l~~l~~L~~  210 (328)
T 4fcg_A          156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-----------------------R-SLPA-SIANLQNLKS  210 (328)
T ss_dssp             EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC-----------------------C-CCCG-GGGGCTTCCE
T ss_pred             ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCc-----------------------C-cchH-hhcCCCCCCE
Confidence            99999998899887654         55555555555554                       4 5676 7889999999


Q ss_pred             EEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccc
Q 001313          785 LDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNT  851 (1102)
Q Consensus       785 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~  851 (1102)
                      |++++|++++ +|..+..+++|++|+|++|++.+.+|..+..+++|+.|+|++|++.+.+|..+.++
T Consensus       211 L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l  276 (328)
T 4fcg_A          211 LKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL  276 (328)
T ss_dssp             EEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGC
T ss_pred             EEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcC
Confidence            9999999995 67789999999999999999999999888888888888887777766666554433

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=6.4e-26  Score=264.28  Aligned_cols=249  Identities=27%  Similarity=0.240  Sum_probs=217.8

Q ss_pred             CCcEEEccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECC
Q 001313          637 SLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMP  716 (1102)
Q Consensus       637 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  716 (1102)
                      ....++.+++.++.+.. .+  .++++.|+|++|++++..+..|..+++|++|++++|++++..+..|.++++|++|+++
T Consensus        44 ~~~~v~c~~~~l~~iP~-~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           44 QFSKVICVRKNLREVPD-GI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             TSCEEECCSCCCSSCCS-CC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCCEEEeCCCCcCcCCC-CC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            45678888888876543 33  3689999999999998888999999999999999999998888899999999999999


Q ss_pred             CCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCc-cCccc
Q 001313          717 KNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYN-HLNGN  795 (1102)
Q Consensus       717 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n-~l~~~  795 (1102)
                      +|++++..+..|..+++|+.|++++|+++                        .++...|.++++|++|++++| .+...
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~------------------------~~~~~~~~~l~~L~~L~l~~~~~l~~i  176 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIE------------------------SIPSYAFNRIPSLRRLDLGELKRLSYI  176 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCC------------------------EECTTTTTTCTTCCEEECCCCTTCCEE
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCccc------------------------ccCHHHhhhCcccCEeCCCCCCCccee
Confidence            99999877778999999999999999886                        344447888999999999994 55555


Q ss_pred             CCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCC
Q 001313          796 IPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGG  875 (1102)
Q Consensus       796 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  875 (1102)
                      .+..|.++++|++|+|++|+++ .+| .+..+++|+.|+|++|++++..|..|.+++                       
T Consensus       177 ~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----------------------  231 (440)
T 3zyj_A          177 SEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLM-----------------------  231 (440)
T ss_dssp             CTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCT-----------------------
T ss_pred             CcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCc-----------------------
Confidence            5568999999999999999998 555 488899999999999999988888877655                       


Q ss_pred             ccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcC
Q 001313          876 MDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNI  955 (1102)
Q Consensus       876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  955 (1102)
                                                    .|+.|+|++|++++..|..|.++++|+.|+|++|+|++..+..|..+++|
T Consensus       232 ------------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  281 (440)
T 3zyj_A          232 ------------------------------HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL  281 (440)
T ss_dssp             ------------------------------TCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred             ------------------------------cCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence                                          68999999999999999999999999999999999999999999999999


Q ss_pred             CEEeCCCCcCcc
Q 001313          956 ESLDLSYNKLSW  967 (1102)
Q Consensus       956 ~~L~Ls~N~l~~  967 (1102)
                      +.|+|++|.+..
T Consensus       282 ~~L~L~~Np~~C  293 (440)
T 3zyj_A          282 ERIHLHHNPWNC  293 (440)
T ss_dssp             CEEECCSSCEEC
T ss_pred             CEEEcCCCCccC
Confidence            999999999874

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=2.2e-26  Score=251.56  Aligned_cols=89  Identities=25%  Similarity=0.206  Sum_probs=50.9

Q ss_pred             CCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcc
Q 001313          906 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA  985 (1102)
Q Consensus       906 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls  985 (1102)
                      .|+.|+|++|++++..+..|..+++|++|+|++|.+++..|..|..+++|+.|++++|++++..+..+..+++|++|+++
T Consensus       154 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  233 (285)
T 1ozn_A          154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN  233 (285)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECC
T ss_pred             CccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEecc
Confidence            34455555555554444445555566666666666665556666666666666666666665544555556666666666


Q ss_pred             cCcCcccCC
Q 001313          986 YNNLSGKIP  994 (1102)
Q Consensus       986 ~N~l~~~~p  994 (1102)
                      +|++.+.++
T Consensus       234 ~N~~~c~~~  242 (285)
T 1ozn_A          234 DNPWVCDCR  242 (285)
T ss_dssp             SSCEECSGG
T ss_pred             CCCccCCCC
Confidence            666655444

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.94  E-value=5.3e-27  Score=285.83  Aligned_cols=392  Identities=14%  Similarity=0.054  Sum_probs=214.1

Q ss_pred             CCCCcCEEEcCCCcCChhhhHhhhcc--CCCcEEEccCCcCCCCCc-hhhccCCCCCcEEecccCccCCcchhhhhcccc
Q 001313          204 RLNNLKVFDLSGNLFNNSILSSLARL--SSLRSLLLYDNRLEGSID-VKEFDSLSNLEELDMSYNEIDNFEVPQACSGLR  280 (1102)
Q Consensus       204 ~l~~L~~L~Ls~n~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~  280 (1102)
                      .+++|++|+|++|.+++..+..++..  .+|++|++++|....... ......+++|++|++++|.+++.....      
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~------  183 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKW------  183 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHH------
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhH------
Confidence            56666666666666666555555553  337777766665110000 111235666777777666654332100      


Q ss_pred             ccceeccccccccCchhhhhhcCCCCCCCEEeCCCCCcccccc-ccccccccccccceeecccchhhhchhhHHHhhccC
Q 001313          281 KLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVT-TTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESM  359 (1102)
Q Consensus       281 ~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l  359 (1102)
                                       +......+++|++|++++|.+..... .....+..+++|+.|++++|..   ..++..+.. +
T Consensus       184 -----------------l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~---~~l~~~~~~-~  242 (592)
T 3ogk_B          184 -----------------LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI---LELVGFFKA-A  242 (592)
T ss_dssp             -----------------HHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG---GGGHHHHHH-C
T ss_pred             -----------------HHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH---HHHHHHHhh-h
Confidence                             11122234444444444444431110 0111123344455555544432   234444444 7


Q ss_pred             CCCcEEecccCcCcCCcccccCCccCCCCccEEEcCCCcCCCCcchhccCCCCCcEEEcCCCccccccCCcccccCCccC
Q 001313          360 PSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIE  439 (1102)
Q Consensus       360 ~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~  439 (1102)
                      ++|++|+++.+............+..+++|+.++++++. ...+|..+..+++|++|++++|.+.+......+..+++|+
T Consensus       243 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~  321 (592)
T 3ogk_B          243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLE  321 (592)
T ss_dssp             TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred             hHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence            888888887643332222333467778899999998753 3467777888889999999998866543234457888899


Q ss_pred             eeecCCcccccccCccccccCCcceEEecCC-----------CccchhhhccccCCCCcccceeeeeccCCCCCCccCcc
Q 001313          440 DLILSDNHFQIPISLEPLFNHSRLKIFDAEN-----------NEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKF  508 (1102)
Q Consensus       440 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~-----------n~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~p~~  508 (1102)
                      +|+++ +.+...........+++|+.|++++           +.+....                           ++..
T Consensus       322 ~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~---------------------------~~~l  373 (592)
T 3ogk_B          322 VLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRG---------------------------LIAL  373 (592)
T ss_dssp             EEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHH---------------------------HHHH
T ss_pred             EEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHH---------------------------HHHH
Confidence            99888 4333222222235677788888772           3333211                           1222


Q ss_pred             ccCCCcccEEEeccccCCCCCChhhhhcCCCCcEEEcc----CCCCcCCC-----cCCCCCCCCcCEEEccCCc--CCCC
Q 001313          509 LYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLV----NDSLVGPF-----RLPIHSHKQLRLLDVSKNN--FQGH  577 (1102)
Q Consensus       509 l~~~~~L~~L~ls~~~~~~~~p~~~~~~~~~L~~L~L~----~n~l~~~~-----~~~~~~~~~L~~L~ls~n~--l~~~  577 (1102)
                      ...+++|++|+++.+.+++..+..+...+++|++|+++    .+.+++..     ...+..+++|+.|+++.|.  +++.
T Consensus       374 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~  453 (592)
T 3ogk_B          374 AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDL  453 (592)
T ss_dssp             HHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHH
T ss_pred             HhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHH
Confidence            33456778888877777766666655567777777775    33444321     1113345666666665432  4444


Q ss_pred             CCchhhhcCCCCcEEEccCCcccc-cCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCc
Q 001313          578 IPLEIGDILSRLTVFNISMNALDG-SIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGH  651 (1102)
Q Consensus       578 ip~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~  651 (1102)
                      .+..++..+++|++|++++|++++ .++..+.++++|++|++++|.+++.....+...+++|++|++++|+++..
T Consensus       454 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          454 GLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             HHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            444444445666666666666554 22333455666666666666655433333334556666666666665543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=3e-26  Score=250.56  Aligned_cols=253  Identities=23%  Similarity=0.252  Sum_probs=182.7

Q ss_pred             CeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCc
Q 001313          663 IWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDN  742 (1102)
Q Consensus       663 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n  742 (1102)
                      ++++.+++.++ .+|..+  .++|++|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|
T Consensus        14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            34555555554 233322  346666666666666555556666666666666666666655666666666666666666


Q ss_pred             c-cccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCc
Q 001313          743 N-ISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVP  821 (1102)
Q Consensus       743 ~-l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  821 (1102)
                      . +.                        .++...|..+++|++|++++|.+++..|..+.++++|++|++++|++++..+
T Consensus        91 ~~l~------------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  146 (285)
T 1ozn_A           91 AQLR------------------------SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD  146 (285)
T ss_dssp             TTCC------------------------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CCcc------------------------ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH
Confidence            5 43                        2322266777788888888888887777788888888888888888887767


Q ss_pred             hhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccC
Q 001313          822 IQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQG  901 (1102)
Q Consensus       822 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  901 (1102)
                      ..+..+++|++|++++|++++..+..|..++                                                 
T Consensus       147 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-------------------------------------------------  177 (285)
T 1ozn_A          147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLH-------------------------------------------------  177 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCT-------------------------------------------------
T ss_pred             hHhccCCCccEEECCCCcccccCHHHhcCcc-------------------------------------------------
Confidence            7788888888888888888766655555443                                                 


Q ss_pred             CcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCE
Q 001313          902 RVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAV  981 (1102)
Q Consensus       902 ~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  981 (1102)
                          .|+.|+|++|++++..|..|..+++|+.|+|++|.+++..+..|..+++|+.|++++|.+.+..+.. .-...++.
T Consensus       178 ----~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~  252 (285)
T 1ozn_A          178 ----SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQK  252 (285)
T ss_dssp             ----TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHH
T ss_pred             ----ccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHh
Confidence                6888999999998888999999999999999999999888888999999999999999998655432 11123444


Q ss_pred             EEcccCcCcccCCcc
Q 001313          982 FSVAYNNLSGKIPER  996 (1102)
Q Consensus       982 l~ls~N~l~~~~p~~  996 (1102)
                      +..+.|.+.|..|..
T Consensus       253 ~~~~~~~~~c~~p~~  267 (285)
T 1ozn_A          253 FRGSSSEVPCSLPQR  267 (285)
T ss_dssp             CCSEECCCBEEESGG
T ss_pred             cccccCccccCCchH
Confidence            557788888888874

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.94  E-value=1.9e-28  Score=298.64  Aligned_cols=377  Identities=12%  Similarity=0.044  Sum_probs=233.9

Q ss_pred             CCCCcCEEEccCCcCCCCCCchhhhcCCC-CcEEEccCCcc-cc-cCCcccCCCCCCcEEEccCcccccccch---hHhh
Q 001313          560 SHKQLRLLDVSKNNFQGHIPLEIGDILSR-LTVFNISMNAL-DG-SIPSSFGNMNFLQFLDLSNNQLTGEIPE---HLAM  633 (1102)
Q Consensus       560 ~~~~L~~L~ls~n~l~~~ip~~~~~~l~~-L~~L~Ls~n~l-~~-~~~~~~~~l~~L~~L~Ls~n~l~~~ip~---~~~~  633 (1102)
                      .+++|++|++++|.+++..+..+...+++ |++|++++|.- +. .++.....+++|++|+|++|.+++.-..   .+..
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            45666677777666654444444432333 77777766651 10 1112223566777777777766543211   1334


Q ss_pred             cCCCCcEEEccccccCC----cccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCC---CCCCccccC
Q 001313          634 GCVSLRSLALSNNNLEG----HMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLS---GKIPRWLGN  706 (1102)
Q Consensus       634 ~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---~~~p~~~~~  706 (1102)
                      .+++|++|++++|.+++    ..+..+.++++|++|++++|.+.+ +|..+..+++|++|+++.....   +..+..+..
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  268 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF  268 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence            56777777777777662    223334456777777777776664 4556666777777777643222   233445666


Q ss_pred             CCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCC--CCCCccccEEEccCcccccccCcccccCccCccE
Q 001313          707 LTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPS--CYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMI  784 (1102)
Q Consensus       707 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~--~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~  784 (1102)
                      +++|+.|+++++.. +.+|..+..+++|++|++++|.+++....  ...+++|+.|+++++...+.++. .+..+++|++
T Consensus       269 ~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~-~~~~~~~L~~  346 (592)
T 3ogk_B          269 PRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEV-LAQYCKQLKR  346 (592)
T ss_dssp             CTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHH-HHHHCTTCCE
T ss_pred             cccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHH-HHHhCCCCCE
Confidence            67777777766432 34566666677777777777775543221  12456777777773322223333 4466788888


Q ss_pred             EEccC-----------ccCcccC-CccccCCCCCCEEEccCccccccCchhhcC-CCCCCEEECc----CccCCCCCC--
Q 001313          785 LDLSY-----------NHLNGNI-PDRVDGLSQLSYLILAHNNLEGEVPIQLCR-LNQLQLLDLS----NNNLHGHIP--  845 (1102)
Q Consensus       785 L~Ls~-----------n~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-l~~L~~L~Ls----~N~l~~~~p--  845 (1102)
                      |++++           |.+++.. +.....+++|++|+++.|++++..+..+.. +++|+.|+++    .|.+++...  
T Consensus       347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~  426 (592)
T 3ogk_B          347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN  426 (592)
T ss_dssp             EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred             EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence            88883           5555432 222445788888888888888777777765 8888888886    555554211  


Q ss_pred             ---cccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCC--CCCC
Q 001313          846 ---SCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNR--LIGH  920 (1102)
Q Consensus       846 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~--l~~~  920 (1102)
                         ..+.+                                                     .+.|+.|+|++|.  +++.
T Consensus       427 ~~~~~~~~-----------------------------------------------------~~~L~~L~L~~~~~~l~~~  453 (592)
T 3ogk_B          427 GVRSLLIG-----------------------------------------------------CKKLRRFAFYLRQGGLTDL  453 (592)
T ss_dssp             HHHHHHHH-----------------------------------------------------CTTCCEEEEECCGGGCCHH
T ss_pred             HHHHHHHh-----------------------------------------------------CCCCCEEEEecCCCCccHH
Confidence               11111                                                     1257888887543  6655


Q ss_pred             Cccccc-CCCcCCEEECCCCCCCC-CCcccccCCCcCCEEeCCCCcCccc-CchhhhcCCCCCEEEcccCcCccc
Q 001313          921 IPPQIG-NLTKIQTLNLSHNNLAG-PIPSTFSNLRNIESLDLSYNKLSWK-IPYQLVELNTLAVFSVAYNNLSGK  992 (1102)
Q Consensus       921 ip~~~~-~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~l~ls~N~l~~~  992 (1102)
                      .+..++ .+++|++|+|++|++++ .++..+..+++|+.|+|++|++++. ++.....+++|++|++++|+++..
T Consensus       454 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          454 GLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             HHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            555554 37889999999998886 3455567888899999999998755 344456788899999999988754

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=1.6e-27  Score=263.77  Aligned_cols=247  Identities=23%  Similarity=0.268  Sum_probs=151.7

Q ss_pred             CCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCC-CCCCcccc-------CCCCccEEECCCCcccCCCcccc-
Q 001313          658 NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLS-GKIPRWLG-------NLTVLRHIIMPKNHIEGPIPLEF-  728 (1102)
Q Consensus       658 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~p~~~~-------~l~~L~~L~l~~n~l~~~~~~~~-  728 (1102)
                      ..++|++|++++|.+  .+|..+...  |+.|++++|.+. +.+|..+.       ++++|++|++++|.+++.+|..+ 
T Consensus        41 ~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  116 (312)
T 1wwl_A           41 GGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL  116 (312)
T ss_dssp             EEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred             cCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence            344555555555555  344433322  555555555552 23443333       44555555555555555555443 


Q ss_pred             -cCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCc-----cCccEEEccCccCcccCCccccC
Q 001313          729 -CQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNC-----LTLMILDLSYNHLNGNIPDRVDG  802 (1102)
Q Consensus       729 -~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~-----~~L~~L~Ls~n~l~~~~p~~~~~  802 (1102)
                       ..+++|++|++++|++++.                        |. .+..+     ++|++|++++|++++..|..++.
T Consensus       117 ~~~l~~L~~L~Ls~N~l~~~------------------------~~-~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~  171 (312)
T 1wwl_A          117 EATGPDLNILNLRNVSWATR------------------------DA-WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV  171 (312)
T ss_dssp             SCCSCCCSEEEEESCBCSSS------------------------SS-HHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred             HhcCCCccEEEccCCCCcch------------------------hH-HHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence             4555555555555555432                        22 33333     67777777777777766677777


Q ss_pred             CCCCCEEEccCcccccc--Cchhh--cCCCCCCEEECcCccCCCCC--Cc-ccccccccccccCCCCCCCccchhhhcCC
Q 001313          803 LSQLSYLILAHNNLEGE--VPIQL--CRLNQLQLLDLSNNNLHGHI--PS-CFDNTTLHERYNNGSSLQPFETSFVIMGG  875 (1102)
Q Consensus       803 l~~L~~L~L~~N~l~~~--~p~~~--~~l~~L~~L~Ls~N~l~~~~--p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  875 (1102)
                      +++|++|+|++|++.+.  .|..+  ..+++|++|++++|++++..  +. .+.++                        
T Consensus       172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l------------------------  227 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR------------------------  227 (312)
T ss_dssp             CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTT------------------------
T ss_pred             CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcC------------------------
Confidence            77777777777776654  23333  67777777777777776311  11 11111                        


Q ss_pred             ccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCc-ccccCCCcCCEEECCCCCCCCCCcccccCCCc
Q 001313          876 MDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIP-PQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRN  954 (1102)
Q Consensus       876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  954 (1102)
                                                   +.|+.|||++|++++.+| ..+..+++|++|+|++|+|+ .+|..+.  ++
T Consensus       228 -----------------------------~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~  275 (312)
T 1wwl_A          228 -----------------------------VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AK  275 (312)
T ss_dssp             -----------------------------CCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SE
T ss_pred             -----------------------------CCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CC
Confidence                                         257778888888877665 45666788888888888888 6676665  77


Q ss_pred             CCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcc
Q 001313          955 IESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSG  991 (1102)
Q Consensus       955 L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~  991 (1102)
                      |+.|||++|+|++. |. +..+++|++|++++|++++
T Consensus       276 L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          276 LSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             EEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             ceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            88888888888865 55 7788888888888888775

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=9.2e-25  Score=260.87  Aligned_cols=67  Identities=27%  Similarity=0.338  Sum_probs=42.1

Q ss_pred             CCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCC
Q 001313          906 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELN  977 (1102)
Q Consensus       906 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  977 (1102)
                      .|+.|+|++|+++ .+|.   .+++|+.|+|++|+|+ .+|..|.++++|+.|+|++|++++.+|..+..++
T Consensus       242 ~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          242 ELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             TCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             cCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            4566666666666 3444   3456666667766666 5566666666667777777766666666655443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=2.4e-27  Score=263.08  Aligned_cols=246  Identities=22%  Similarity=0.190  Sum_probs=162.8

Q ss_pred             CCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEc
Q 001313          683 CSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHL  762 (1102)
Q Consensus       683 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l  762 (1102)
                      +++|++|++++|++++..|..|..+++|++|++++|.+++..+  +..+++|++|++++|++++..+    .++|+.|++
T Consensus        33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l  106 (317)
T 3o53_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHA  106 (317)
T ss_dssp             GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred             CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccC----CCCcCEEEC
Confidence            3344444444444443333444444444444444444443322  4444444444444444443211    134555555


Q ss_pred             cCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhc-CCCCCCEEECcCccCC
Q 001313          763 SKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLC-RLNQLQLLDLSNNNLH  841 (1102)
Q Consensus       763 ~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~  841 (1102)
                      ++|++.+..+.    .+++|++|++++|++++..|..+..+++|++|++++|++++..|..+. .+++|++|++++|.++
T Consensus       107 ~~n~l~~~~~~----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  182 (317)
T 3o53_A          107 ANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (317)
T ss_dssp             CSSCCSEEEEC----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             CCCccCCcCcc----ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence            55555443222    246788888888888887777888888888888888888877777664 6888999999998887


Q ss_pred             CCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCC
Q 001313          842 GHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHI  921 (1102)
Q Consensus       842 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~i  921 (1102)
                      +..+..                                                       ..+.|+.|+|++|++++. 
T Consensus       183 ~~~~~~-------------------------------------------------------~l~~L~~L~Ls~N~l~~l-  206 (317)
T 3o53_A          183 DVKGQV-------------------------------------------------------VFAKLKTLDLSSNKLAFM-  206 (317)
T ss_dssp             EEECCC-------------------------------------------------------CCTTCCEEECCSSCCCEE-
T ss_pred             cccccc-------------------------------------------------------ccccCCEEECCCCcCCcc-
Confidence            441111                                                       022688899999998854 


Q ss_pred             cccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCc-ccCchhhhcCCCCCEEEcc-cCcCcccCCc
Q 001313          922 PPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS-WKIPYQLVELNTLAVFSVA-YNNLSGKIPE  995 (1102)
Q Consensus       922 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~l~ls-~N~l~~~~p~  995 (1102)
                      |+.+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|+++ +.+|..+..++.|+.++++ .+.+.|..|.
T Consensus       207 ~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          207 GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred             hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence            445888899999999999998 46778888899999999999998 7788888888888888888 4455655443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=4.3e-27  Score=260.39  Aligned_cols=249  Identities=26%  Similarity=0.240  Sum_probs=149.0

Q ss_pred             CCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccCccCcccCCCCcC------
Q 001313          608 GNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLS------  681 (1102)
Q Consensus       608 ~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~------  681 (1102)
                      +..++|+.|++++|.+  .+|..+...   |+.|++++|.++.                       ..+|..+.      
T Consensus        40 ~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~-----------------------~~~~~~~~~~~~~~   91 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRA-----------------------ARIPSRILFGALRV   91 (312)
T ss_dssp             EEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEE-----------------------EECBHHHHHHHHHH
T ss_pred             ccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccC-----------------------CCcCHHHHHHHHHh
Confidence            3445566666666666  556555422   5555555555532                       12222222      


Q ss_pred             -CCCCCcEEEccCCcCCCCCCccc--cCCCCccEEECCCCcccCCCcccccCC-----CcccEEEccCcccccCCCCCCC
Q 001313          682 -KCSSLQGLFLSNNSLSGKIPRWL--GNLTVLRHIIMPKNHIEGPIPLEFCQL-----RILQILDISDNNISGSLPSCYD  753 (1102)
Q Consensus       682 -~l~~L~~L~l~~n~l~~~~p~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~ls~n~l~~~~p~~~~  753 (1102)
                       .+++|++|++++|++++.+|..+  ..+++|++|++++|++++. |..+..+     ++|++|++++|++++.      
T Consensus        92 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~------  164 (312)
T 1wwl_A           92 LGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNF------  164 (312)
T ss_dssp             HTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCC------
T ss_pred             cCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccc------
Confidence             34455555555555554444443  4555555555555555544 4444443     5555555555555422      


Q ss_pred             CccccEEEccCcccccccCcccccCccCccEEEccCccCccc--CCccc--cCCCCCCEEEccCccccc--cCc-hhhcC
Q 001313          754 FVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGN--IPDRV--DGLSQLSYLILAHNNLEG--EVP-IQLCR  826 (1102)
Q Consensus       754 ~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~--~p~~~--~~l~~L~~L~L~~N~l~~--~~p-~~~~~  826 (1102)
                                        +...|.++++|++|++++|++.+.  .|..+  ..+++|++|+|++|++++  .++ ..+..
T Consensus       165 ------------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~  226 (312)
T 1wwl_A          165 ------------------SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA  226 (312)
T ss_dssp             ------------------CTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHT
T ss_pred             ------------------hHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhc
Confidence                              211455555566666666655443  12222  566777777777777763  122 34456


Q ss_pred             CCCCCEEECcCccCCCCCCc-ccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCC
Q 001313          827 LNQLQLLDLSNNNLHGHIPS-CFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPS  905 (1102)
Q Consensus       827 l~~L~~L~Ls~N~l~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  905 (1102)
                      +++|++|++++|++++.+|. .+..                                                     .+
T Consensus       227 l~~L~~L~Ls~N~l~~~~~~~~~~~-----------------------------------------------------l~  253 (312)
T 1wwl_A          227 RVQLQGLDLSHNSLRDAAGAPSCDW-----------------------------------------------------PS  253 (312)
T ss_dssp             TCCCSEEECTTSCCCSSCCCSCCCC-----------------------------------------------------CT
T ss_pred             CCCCCEEECCCCcCCcccchhhhhh-----------------------------------------------------cC
Confidence            78888888888888776642 2211                                                     12


Q ss_pred             CCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcc
Q 001313          906 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSW  967 (1102)
Q Consensus       906 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  967 (1102)
                      .|+.|+|++|+++ .+|..+.  ++|++|||++|+|++. |. +..+++|+.|+|++|++++
T Consensus       254 ~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          254 QLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             TCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             CCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            6788888888888 7777776  7899999999999876 65 8889999999999999885

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=2.5e-26  Score=269.75  Aligned_cols=234  Identities=21%  Similarity=0.172  Sum_probs=129.3

Q ss_pred             CCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEcc
Q 001313          684 SSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLS  763 (1102)
Q Consensus       684 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~  763 (1102)
                      ++|++|++++|.+++..|..|+.+++|+.|++++|.+++..|  +..+++|++|++++|.+++..+.    ++|+.|+++
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~  107 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG----PSIETLHAA  107 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC----TTCCEEECC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC----CCcCEEECc
Confidence            355555555555555555555555555555555555554443  55555666666666555532211    344444444


Q ss_pred             CcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhc-CCCCCCEEECcCccCCC
Q 001313          764 KNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLC-RLNQLQLLDLSNNNLHG  842 (1102)
Q Consensus       764 ~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~  842 (1102)
                      +|.+.+..+.    .+++|+.|++++|.+++..|..++.+++|+.|+|++|.+++.+|..+. .+++|+.|+|++|.+++
T Consensus       108 ~N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~  183 (487)
T 3oja_A          108 NNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (487)
T ss_dssp             SSCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             CCcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence            4444432221    235667777777777766666666667777777777777666666654 56666666666666654


Q ss_pred             CCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCc
Q 001313          843 HIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIP  922 (1102)
Q Consensus       843 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip  922 (1102)
                      ..+..  .                                                     .+.|+.|+|++|.+++..|
T Consensus       184 ~~~~~--~-----------------------------------------------------l~~L~~L~Ls~N~l~~~~~  208 (487)
T 3oja_A          184 VKGQV--V-----------------------------------------------------FAKLKTLDLSSNKLAFMGP  208 (487)
T ss_dssp             EECCC--C-----------------------------------------------------CTTCCEEECCSSCCCEECG
T ss_pred             ccccc--c-----------------------------------------------------CCCCCEEECCCCCCCCCCH
Confidence            32111  0                                                     1145556666666654333


Q ss_pred             ccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCc-ccCchhhhcCCCCCEEEc
Q 001313          923 PQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS-WKIPYQLVELNTLAVFSV  984 (1102)
Q Consensus       923 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~l~l  984 (1102)
                       .|..+++|+.|+|++|.|++ +|..++.+++|+.|++++|.+. +.+|..+..++.|+.+++
T Consensus       209 -~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~  269 (487)
T 3oja_A          209 -EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK  269 (487)
T ss_dssp             -GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred             -hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence             35555666666666666663 4445555566666666666655 444555555544444444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=6.2e-27  Score=259.73  Aligned_cols=269  Identities=19%  Similarity=0.160  Sum_probs=191.8

Q ss_pred             CCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEc
Q 001313          612 FLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFL  691 (1102)
Q Consensus       612 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  691 (1102)
                      .++..+++.+.+. ..+..++..+++|++|++++|++++..+..+.++++|++|++++|.+++..+  +..+++|++|++
T Consensus        11 ~l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L   87 (317)
T 3o53_A           11 RYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL   87 (317)
T ss_dssp             EEEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred             ceeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence            3556677777776 5566666666677777777777777766667777777777777777665443  666666666666


Q ss_pred             cCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCccccccc
Q 001313          692 SNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQL  771 (1102)
Q Consensus       692 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i  771 (1102)
                      ++|++++..     ..++|++|++++|++++..+..   +++|+.|++++|                       ++++..
T Consensus        88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N-----------------------~l~~~~  136 (317)
T 3o53_A           88 NNNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANN-----------------------KITMLR  136 (317)
T ss_dssp             CSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSS-----------------------CCCSGG
T ss_pred             cCCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCC-----------------------CCCCcc
Confidence            666665321     2255666666666555433322   334555555555                       444433


Q ss_pred             CcccccCccCccEEEccCccCcccCCcccc-CCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCccccc
Q 001313          772 KEGTFFNCLTLMILDLSYNHLNGNIPDRVD-GLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN  850 (1102)
Q Consensus       772 ~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  850 (1102)
                      +. .|..+++|++|++++|.+++..|..+. .+++|++|+|++|++++. |. ...+++|++|+|++|++++..|. +..
T Consensus       137 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~~-~~~  212 (317)
T 3o53_A          137 DL-DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPE-FQS  212 (317)
T ss_dssp             GB-CTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGG-GGG
T ss_pred             ch-hhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcchhh-hcc
Confidence            33 777888899999999998887777664 688999999999998855 32 33588999999999998865443 443


Q ss_pred             ccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCc
Q 001313          851 TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTK  930 (1102)
Q Consensus       851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~  930 (1102)
                      ++                                                     .|+.|+|++|+++ .+|..+..+++
T Consensus       213 l~-----------------------------------------------------~L~~L~L~~N~l~-~l~~~~~~l~~  238 (317)
T 3o53_A          213 AA-----------------------------------------------------GVTWISLRNNKLV-LIEKALRFSQN  238 (317)
T ss_dssp             GT-----------------------------------------------------TCSEEECTTSCCC-EECTTCCCCTT
T ss_pred             cC-----------------------------------------------------cccEEECcCCccc-chhhHhhcCCC
Confidence            32                                                     6889999999998 57888999999


Q ss_pred             CCEEECCCCCCC-CCCcccccCCCcCCEEeCC-CCcCcccCchh
Q 001313          931 IQTLNLSHNNLA-GPIPSTFSNLRNIESLDLS-YNKLSWKIPYQ  972 (1102)
Q Consensus       931 L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls-~N~l~~~~p~~  972 (1102)
                      |+.|+|++|.++ +.+|..+..+++|+.|+++ .+.++|..|..
T Consensus       239 L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~  282 (317)
T 3o53_A          239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE  282 (317)
T ss_dssp             CCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred             CCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhc
Confidence            999999999999 8889999999999999999 55677766643

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=2.5e-24  Score=257.19  Aligned_cols=268  Identities=27%  Similarity=0.331  Sum_probs=171.9

Q ss_pred             CCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeec
Q 001313          588 RLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQL  667 (1102)
Q Consensus       588 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  667 (1102)
                      +++.|++++|.++ .+|..+.  ++|++|++++|+++ .+|.    .+++|++|++++|+++++                
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l----------------   96 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL----------------   96 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCC----------------
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcC----------------
Confidence            5677777777776 5555544  56777777777766 5554    245555555555555432                


Q ss_pred             cCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccC
Q 001313          668 EGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGS  747 (1102)
Q Consensus       668 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~  747 (1102)
                               |.   .+++|++|++++|++++ +|.   .+++|+.|++++|++++ +|..   +++|++|++++|++++ 
T Consensus        97 ---------p~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-  155 (622)
T 3g06_A           97 ---------PV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-  155 (622)
T ss_dssp             ---------CC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-
T ss_pred             ---------CC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-
Confidence                     22   23444444444444442 222   23445555555555443 2221   2455555555555542 


Q ss_pred             CCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCC
Q 001313          748 LPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRL  827 (1102)
Q Consensus       748 ~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l  827 (1102)
                                             +|.    .+++|+.|++++|.+++ +|   ..+++|+.|++++|++++ +|..   +
T Consensus       156 -----------------------l~~----~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~  200 (622)
T 3g06_A          156 -----------------------LPA----LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---P  200 (622)
T ss_dssp             -----------------------CCC----CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---C
T ss_pred             -----------------------cCC----ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---c
Confidence                                   221    12356666666666664 33   345667777777777764 3332   4


Q ss_pred             CCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCC
Q 001313          828 NQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLL  907 (1102)
Q Consensus       828 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  907 (1102)
                      ++|+.|++++|.++. +|..                                                        ++.|
T Consensus       201 ~~L~~L~L~~N~l~~-l~~~--------------------------------------------------------~~~L  223 (622)
T 3g06_A          201 SELYKLWAYNNRLTS-LPAL--------------------------------------------------------PSGL  223 (622)
T ss_dssp             TTCCEEECCSSCCSS-CCCC--------------------------------------------------------CTTC
T ss_pred             chhhEEECcCCcccc-cCCC--------------------------------------------------------CCCC
Confidence            677888888887763 2221                                                        1257


Q ss_pred             ceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccC
Q 001313          908 SGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYN  987 (1102)
Q Consensus       908 ~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N  987 (1102)
                      +.|+|++|++++ +|   ..+++|+.|+|++|+|++ +|.   .+++|+.|+|++|+|+ .+|..+.++++|+.|++++|
T Consensus       224 ~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N  294 (622)
T 3g06_A          224 KELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGN  294 (622)
T ss_dssp             CEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSC
T ss_pred             CEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCC
Confidence            889999999986 66   456899999999999994 565   5789999999999999 78999999999999999999


Q ss_pred             cCcccCCccccccC
Q 001313          988 NLSGKIPERAAQFA 1001 (1102)
Q Consensus       988 ~l~~~~p~~~~~~~ 1001 (1102)
                      ++++.+|..+..+.
T Consensus       295 ~l~~~~~~~l~~L~  308 (622)
T 3g06_A          295 PLSERTLQALREIT  308 (622)
T ss_dssp             CCCHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHhcc
Confidence            99998887554443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=5.8e-26  Score=266.57  Aligned_cols=235  Identities=22%  Similarity=0.197  Sum_probs=174.9

Q ss_pred             CccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEc
Q 001313          660 TNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDI  739 (1102)
Q Consensus       660 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  739 (1102)
                      ++|++|+|++|.+++..|..|..+++|++|++++|.+++..|  +..+++|++|++++|.+++..+     .++|+.|++
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L  106 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA  106 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence            355555555555555445555555556666666555554433  5556666666666666553322     256666666


Q ss_pred             cCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCcccc-CCCCCCEEEccCccccc
Q 001313          740 SDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVD-GLSQLSYLILAHNNLEG  818 (1102)
Q Consensus       740 s~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~N~l~~  818 (1102)
                      ++|.+++..+..  +++|+.|++++|.+++..|. .|.++++|+.|++++|.+++..|..+. .+++|+.|+|++|.+++
T Consensus       107 ~~N~l~~~~~~~--l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~  183 (487)
T 3oja_A          107 ANNNISRVSCSR--GQGKKNIYLANNKITMLRDL-DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (487)
T ss_dssp             CSSCCCCEEECC--CSSCEEEECCSSCCCSGGGB-CGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             cCCcCCCCCccc--cCCCCEEECCCCCCCCCCch-hhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence            666666554432  35677777777777765565 888999999999999999998888886 79999999999999997


Q ss_pred             cCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeee
Q 001313          819 EVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYT  898 (1102)
Q Consensus       819 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  898 (1102)
                      ..+  ...+++|+.|+|++|.+++.+|. +..++                                              
T Consensus       184 ~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~----------------------------------------------  214 (487)
T 3oja_A          184 VKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAA----------------------------------------------  214 (487)
T ss_dssp             EEC--CCCCTTCCEEECCSSCCCEECGG-GGGGT----------------------------------------------
T ss_pred             ccc--cccCCCCCEEECCCCCCCCCCHh-HcCCC----------------------------------------------
Confidence            633  34699999999999999976554 54433                                              


Q ss_pred             ccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCC-CCCcccccCCCcCCEEeCC
Q 001313          899 YQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLA-GPIPSTFSNLRNIESLDLS  961 (1102)
Q Consensus       899 ~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls  961 (1102)
                             .|+.|+|++|.+++ +|..++.+++|+.|++++|.++ +.+|..+..++.|+.++++
T Consensus       215 -------~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          215 -------GVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             -------TCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             -------CccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence                   68999999999996 7888999999999999999999 7888889999999888876

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=9e-27  Score=284.01  Aligned_cols=197  Identities=16%  Similarity=0.126  Sum_probs=115.1

Q ss_pred             CCcCcCceEecCCCCcEEEEEcCCCCCCcccccccccCCCCCCCCEEeCCCCCCCCccc----------chhhhh-hcCC
Q 001313           60 DCCQWERVSCNNTMGRVVVLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVE----------NEGLER-LSRL  128 (1102)
Q Consensus        60 ~cc~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~~~----------~~~~~~-l~~l  128 (1102)
                      =|++|+++...    ..+.+++......    .....+..|++|++|+++++.......          ...+.. ...+
T Consensus        33 vck~W~~~~~~----~~~~l~~~~~~~~----~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~  104 (594)
T 2p1m_B           33 VCKSWYEIERW----CRRKVFIGNCYAV----SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSY  104 (594)
T ss_dssp             SCHHHHHHHHH----HCCEEEESSTTSS----CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHC
T ss_pred             HHHHHHHhhhh----hceEEeecccccc----CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhC
Confidence            36689888322    2345666554211    123456788999999999875321110          001112 2467


Q ss_pred             CCCcEEeCCCCcCCcchhHhhh-cCCCcCEEEcCCC-cccCCCChhhhccCCCCcEEEcCCCcCCcccccCCccccCCCC
Q 001313          129 SNLKMLNLVGNLFNNSILSSLA-RLSSLTSLDLSAN-RLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLN  206 (1102)
Q Consensus       129 ~~L~~L~Ls~n~~~~~~~~~l~-~l~~L~~L~Ls~n-~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~  206 (1102)
                      ++|++|+|++|.+++..+..+. .+++|++|++++| .+.....+..+.++++|++|++++|.+++..+...+.....++
T Consensus       105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~  184 (594)
T 2p1m_B          105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT  184 (594)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred             CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence            8888888888888877777775 6888888888888 4432111223347888888888888766654432333344667


Q ss_pred             CcCEEEcCCCc--CChh-hhHhhhccCCCcEEEccCCcCCCCCchhhccCCCCCcEEecccC
Q 001313          207 NLKVFDLSGNL--FNNS-ILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYN  265 (1102)
Q Consensus       207 ~L~~L~Ls~n~--l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n  265 (1102)
                      +|++|++++|.  ++.. +...+.++++|++|++++|...+.++ ..+..+++|++|+++.+
T Consensus       185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~-~~~~~~~~L~~L~l~~~  245 (594)
T 2p1m_B          185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLA-TLLQRAPQLEELGTGGY  245 (594)
T ss_dssp             CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHH-HHHHHCTTCSEEECSBC
T ss_pred             cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHH-HHHhcCCcceEcccccc
Confidence            77888877775  3322 22223455677777776662211222 24445555666655443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=3.3e-24  Score=233.01  Aligned_cols=209  Identities=23%  Similarity=0.294  Sum_probs=124.3

Q ss_pred             CccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEcc
Q 001313          709 VLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLS  788 (1102)
Q Consensus       709 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls  788 (1102)
                      +|++|++++|.+++..+..|.++++|++|++++|++++                        ++...|.++++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------------------~~~~~~~~l~~L~~L~L~   84 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT------------------------IEDGAYQSLSHLSTLILT   84 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCE------------------------ECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCc------------------------cCHHHccCCcCCCEEECC
Confidence            34455555555444444444455555555555554432                        222244445555555555


Q ss_pred             CccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCC-CCcccccccccccccCCCCCCCcc
Q 001313          789 YNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGH-IPSCFDNTTLHERYNNGSSLQPFE  867 (1102)
Q Consensus       789 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~~~~~~~~~~~~~~~~~~  867 (1102)
                      +|++++..+..+.++++|++|++++|++++..+..+..+++|++|++++|.+++. +|..+.+++               
T Consensus        85 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~---------------  149 (276)
T 2z62_A           85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT---------------  149 (276)
T ss_dssp             TCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT---------------
T ss_pred             CCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCC---------------
Confidence            5555554445555555555555555555544444455555555555555555542 344444332               


Q ss_pred             chhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCC----EEECCCCCCCC
Q 001313          868 TSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQ----TLNLSHNNLAG  943 (1102)
Q Consensus       868 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~----~L~Ls~N~l~~  943 (1102)
                                                            .|+.|+|++|++++..+..|..+++|+    .|++++|.+++
T Consensus       150 --------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~  191 (276)
T 2z62_A          150 --------------------------------------NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF  191 (276)
T ss_dssp             --------------------------------------TCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCE
T ss_pred             --------------------------------------CCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccc
Confidence                                                  455566666666655555555555555    78888888887


Q ss_pred             CCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCCc
Q 001313          944 PIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPE  995 (1102)
Q Consensus       944 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~  995 (1102)
                      ..+..+.. .+|+.|+|++|++++..+..+..+++|+.|++++|++.|.+|.
T Consensus       192 ~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  242 (276)
T 2z62_A          192 IQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  242 (276)
T ss_dssp             ECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred             cCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence            66666654 3788888888888876666678888888888888888888775

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=5.2e-23  Score=223.57  Aligned_cols=218  Identities=24%  Similarity=0.231  Sum_probs=168.2

Q ss_pred             CCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCc
Q 001313          676 IPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFV  755 (1102)
Q Consensus       676 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~  755 (1102)
                      +|..+.  ++|++|++++|++++..+..|.++++|++|++++|++++..+..|..+++|++|++++|.+++         
T Consensus        22 ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---------   90 (276)
T 2z62_A           22 IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS---------   90 (276)
T ss_dssp             CCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE---------
T ss_pred             cCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc---------
Confidence            444432  467888888888876666677888888888888888877777778888888888888887763         


Q ss_pred             cccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCcccccc-CchhhcCCCCCCEEE
Q 001313          756 CIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGE-VPIQLCRLNQLQLLD  834 (1102)
Q Consensus       756 ~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~  834 (1102)
                                     ++...|.++++|++|++++|++++..+..+..+++|++|++++|++++. +|..+..+++|++|+
T Consensus        91 ---------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~  155 (276)
T 2z62_A           91 ---------------LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD  155 (276)
T ss_dssp             ---------------ECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred             ---------------cChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEE
Confidence                           2222677778888888888888877776788888888888888888864 588888889999999


Q ss_pred             CcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCc-eEECC
Q 001313          835 LSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLS-GLDLS  913 (1102)
Q Consensus       835 Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~Ls  913 (1102)
                      +++|++++..+..+..+..                                                  ...+. .|+++
T Consensus       156 Ls~N~l~~~~~~~~~~l~~--------------------------------------------------L~~l~l~L~ls  185 (276)
T 2z62_A          156 LSSNKIQSIYCTDLRVLHQ--------------------------------------------------MPLLNLSLDLS  185 (276)
T ss_dssp             CCSSCCCEECGGGGHHHHT--------------------------------------------------CTTCCEEEECC
T ss_pred             CCCCCCCcCCHHHhhhhhh--------------------------------------------------ccccceeeecC
Confidence            9999888776666554430                                                  00122 78999


Q ss_pred             CCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCc
Q 001313          914 CNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIP  970 (1102)
Q Consensus       914 ~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  970 (1102)
                      +|++++..+..+.. .+|+.|+|++|++++..+..|..+++|+.|+|++|++++..|
T Consensus       186 ~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          186 LNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             SSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             CCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence            99998766655554 589999999999998888889999999999999999997654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=1.7e-22  Score=218.39  Aligned_cols=207  Identities=24%  Similarity=0.256  Sum_probs=179.6

Q ss_pred             cccEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEcc
Q 001313          733 ILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILA  812 (1102)
Q Consensus       733 ~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~  812 (1102)
                      ..+.++++++.++. +|..+. .+++.|++++|++.+ ++...|.++++|++|++++|+++...+..|.++++|++|+++
T Consensus        17 ~~~~l~~~~~~l~~-ip~~~~-~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           17 NKNSVDCSSKKLTA-IPSNIP-ADTKKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTEEECTTSCCSS-CCSCCC-TTCSEEECCSSCCSC-CCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCEEEccCCCCCc-cCCCCC-CCCCEEECcCCCCCe-eCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            57899999999984 554332 689999999999985 555489999999999999999997777778899999999999


Q ss_pred             CccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeec
Q 001313          813 HNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTT  892 (1102)
Q Consensus       813 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  892 (1102)
                      +|++++..+..|..+++|++|++++|++++..|..|..++                                        
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~----------------------------------------  133 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT----------------------------------------  133 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT----------------------------------------
T ss_pred             CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCc----------------------------------------
Confidence            9999987778889999999999999999988777766554                                        


Q ss_pred             cceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchh
Q 001313          893 KSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQ  972 (1102)
Q Consensus       893 ~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  972 (1102)
                                   .|+.|+|++|++++..+..|..+++|++|+|++|++++..+..|.++++|+.|+|++|++++..+..
T Consensus       134 -------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  200 (270)
T 2o6q_A          134 -------------KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA  200 (270)
T ss_dssp             -------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred             -------------CCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHH
Confidence                         6899999999999877777999999999999999999888888999999999999999999877777


Q ss_pred             hhcCCCCCEEEcccCcCcccCCc
Q 001313          973 LVELNTLAVFSVAYNNLSGKIPE  995 (1102)
Q Consensus       973 l~~l~~L~~l~ls~N~l~~~~p~  995 (1102)
                      +..+++|+.|++++|++.+.++.
T Consensus       201 ~~~l~~L~~L~l~~N~~~c~c~~  223 (270)
T 2o6q_A          201 FDSLEKLKMLQLQENPWDCTCNG  223 (270)
T ss_dssp             TTTCTTCCEEECCSSCBCCSSSS
T ss_pred             hccccCCCEEEecCCCeeCCCcc
Confidence            88899999999999999887764

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.89  E-value=3.1e-22  Score=216.38  Aligned_cols=201  Identities=25%  Similarity=0.284  Sum_probs=101.3

Q ss_pred             ccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCC-CCccccEEEccCcccccccCcccccCccCccEEEcc
Q 001313          710 LRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCY-DFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLS  788 (1102)
Q Consensus       710 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~-~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls  788 (1102)
                      .+.++++++.++. +|..+.  ++++.|++++|++++..+..+ .+++|++|++++|++++ +|...|.++++|++|+++
T Consensus        18 ~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           18 KNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC-CCTTTTSSCTTCCEEECC
T ss_pred             CCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe-eChhhhcCCCCCCEEECC
Confidence            4455555555542 333222  345555555555554433222 34555555555555542 333344555555555555


Q ss_pred             CccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccc
Q 001313          789 YNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFET  868 (1102)
Q Consensus       789 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~  868 (1102)
                      +|++++..+..|..+++|++|++++|++++..+..|..+++|++|+|++|.+++..+..|..++                
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~----------------  157 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT----------------  157 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT----------------
T ss_pred             CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc----------------
Confidence            5555544444455555555555555555554444555555555555555555544333333222                


Q ss_pred             hhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCccc
Q 001313          869 SFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPST  948 (1102)
Q Consensus       869 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~  948 (1102)
                                                           .|+.|+|++|++++..+..|..+++|++|+|++|++++..+..
T Consensus       158 -------------------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  200 (270)
T 2o6q_A          158 -------------------------------------SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA  200 (270)
T ss_dssp             -------------------------------------TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred             -------------------------------------ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHH
Confidence                                                 3455555555555444444555555555555555555444444


Q ss_pred             ccCCCcCCEEeCCCCcCcc
Q 001313          949 FSNLRNIESLDLSYNKLSW  967 (1102)
Q Consensus       949 ~~~l~~L~~L~Ls~N~l~~  967 (1102)
                      |..+++|+.|+|++|.+..
T Consensus       201 ~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          201 FDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             TTTCTTCCEEECCSSCBCC
T ss_pred             hccccCCCEEEecCCCeeC
Confidence            5555555555555555543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.89  E-value=3.2e-25  Score=270.28  Aligned_cols=215  Identities=17%  Similarity=0.123  Sum_probs=96.8

Q ss_pred             ccCCCCCcCEEEcCCCcCChh---------------hhHhhhccCCCcEEEccCCcCCCCCchhhcc-CCCCCcEEeccc
Q 001313          201 RLSRLNNLKVFDLSGNLFNNS---------------ILSSLARLSSLRSLLLYDNRLEGSIDVKEFD-SLSNLEELDMSY  264 (1102)
Q Consensus       201 ~l~~l~~L~~L~Ls~n~l~~~---------------~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~-~l~~L~~L~L~~  264 (1102)
                      .+..+++|++|+++++.....               +......+++|++|++++|.+.+.... .+. .+++|++|++++
T Consensus        61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~-~l~~~~~~L~~L~L~~  139 (594)
T 2p1m_B           61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLE-LIAKSFKNFKVLVLSS  139 (594)
T ss_dssp             HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHH-HHHHHCTTCCEEEEES
T ss_pred             HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHH-HHHHhCCCCcEEeCCC
Confidence            455667777777777642211               112234566677777776665433222 232 466677777766


Q ss_pred             C-ccCCcchhhhhccccccceeccccccccCchhhhhhcCCCCCCCEEeCCCCCccccccccccc-cccccccceeeccc
Q 001313          265 N-EIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQG-FPHFKSLKELYMDD  342 (1102)
Q Consensus       265 n-~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~-~~~l~~L~~L~l~~  342 (1102)
                      | .+++.                          .+......+++|++|++++|.+.......... ...+++|+.|++++
T Consensus       140 ~~~~~~~--------------------------~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~  193 (594)
T 2p1m_B          140 CEGFSTD--------------------------GLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISC  193 (594)
T ss_dssp             CEEEEHH--------------------------HHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTT
T ss_pred             cCCCCHH--------------------------HHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecc
Confidence            6 33321                          12233335666666666666654322211111 12344555555554


Q ss_pred             chhhhchhhHHHhhccCCCCcEEecccCcCcCCcccccCCccCCCCccEEEcCCCcC-------CCCcchhccCCCCCcE
Q 001313          343 ARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDL-------RGSLPWCLANMTSLRI  415 (1102)
Q Consensus       343 ~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l-------~~~~p~~l~~l~~L~~  415 (1102)
                      +...........+...+++|++|++++|......+.   .+..+++|++|++..+..       . .++..+.++++|+.
T Consensus       194 ~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~---~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l~~~~~L~~  269 (594)
T 2p1m_B          194 LASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLAT---LLQRAPQLEELGTGGYTAEVRPDVYS-GLSVALSGCKELRC  269 (594)
T ss_dssp             CCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHH---HHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHHHTCTTCCE
T ss_pred             cCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHH---HHhcCCcceEcccccccCccchhhHH-HHHHHHhcCCCccc
Confidence            431111111111211256666666665522111222   344455566665443321       1 12234555555555


Q ss_pred             E-EcCCCccccccCCcccccCCccCeeecCCccc
Q 001313          416 L-DVSSNQLIGSISSSPLIHLTSIEDLILSDNHF  448 (1102)
Q Consensus       416 L-~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~l  448 (1102)
                      | .+.+... +.+ +..+..+++|++|++++|.+
T Consensus       270 Ls~~~~~~~-~~l-~~~~~~~~~L~~L~L~~~~l  301 (594)
T 2p1m_B          270 LSGFWDAVP-AYL-PAVYSVCSRLTTLNLSYATV  301 (594)
T ss_dssp             EECCBTCCG-GGG-GGGHHHHTTCCEEECTTCCC
T ss_pred             ccCCcccch-hhH-HHHHHhhCCCCEEEccCCCC
Confidence            5 2322211 111 22223445555555555543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=1e-22  Score=220.21  Aligned_cols=223  Identities=24%  Similarity=0.268  Sum_probs=176.1

Q ss_pred             cEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcc
Q 001313          687 QGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNM  766 (1102)
Q Consensus       687 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~  766 (1102)
                      ..+++..+.+...  .....+++|+.|++++|.++..  ..+..+++|++|++++|.+++                    
T Consensus        22 ~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~--------------------   77 (272)
T 3rfs_A           22 IKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD--------------------   77 (272)
T ss_dssp             HHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC--------------------
T ss_pred             HHHHhcCcccccc--cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC--------------------
Confidence            3444445544432  2244566777777777776532  235666777777777666652                    


Q ss_pred             cccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCc
Q 001313          767 LHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPS  846 (1102)
Q Consensus       767 l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  846 (1102)
                          ++  .+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|.
T Consensus        78 ----~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  151 (272)
T 3rfs_A           78 ----IS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG  151 (272)
T ss_dssp             ----CG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             ----ch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHH
Confidence                22  577788899999999999988888888999999999999999988888889999999999999999877776


Q ss_pred             ccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCccccc
Q 001313          847 CFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIG  926 (1102)
Q Consensus       847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~  926 (1102)
                      .|..++                                                     .|+.|++++|++++..|..|+
T Consensus       152 ~~~~l~-----------------------------------------------------~L~~L~l~~n~l~~~~~~~~~  178 (272)
T 3rfs_A          152 VFDKLT-----------------------------------------------------NLTELDLSYNQLQSLPEGVFD  178 (272)
T ss_dssp             TTTTCT-----------------------------------------------------TCCEEECCSSCCCCCCTTTTT
T ss_pred             HhccCc-----------------------------------------------------cCCEEECCCCCcCccCHHHhc
Confidence            665544                                                     688999999999988888889


Q ss_pred             CCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCCccccc
Q 001313          927 NLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQ  999 (1102)
Q Consensus       927 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~  999 (1102)
                      .+++|++|+|++|++++..|..|+.+++|+.|++++|.+.+..|       .|++++++.|.++|.+|...+.
T Consensus       179 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~-------~l~~l~~~~n~~~g~ip~~~~~  244 (272)
T 3rfs_A          179 KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP-------GIRYLSEWINKHSGVVRNSAGS  244 (272)
T ss_dssp             TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT-------TTHHHHHHHHHTGGGBBCTTSC
T ss_pred             CCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc-------HHHHHHHHHHhCCCcccCcccc
Confidence            99999999999999999999889999999999999999987644       6788899999999999985443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=4.7e-22  Score=216.53  Aligned_cols=180  Identities=27%  Similarity=0.254  Sum_probs=152.9

Q ss_pred             cccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEEC
Q 001313          756 CIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDL  835 (1102)
Q Consensus       756 ~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  835 (1102)
                      .++.|++++|.+.+..+. .|.++++|++|++++|.+++..+.  +.+++|++|++++|+++ .+|..+..+++|++|++
T Consensus        32 ~l~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l  107 (290)
T 1p9a_G           32 DTTILHLSENLLYTFSLA-TLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV  107 (290)
T ss_dssp             TCCEEECTTSCCSEEEGG-GGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEEC
T ss_pred             CCCEEEcCCCcCCccCHH-HhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEEC
Confidence            444555555555443344 788899999999999999875443  78899999999999998 77888899999999999


Q ss_pred             cCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCC
Q 001313          836 SNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCN  915 (1102)
Q Consensus       836 s~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N  915 (1102)
                      ++|++++..|..|..++                                                     .|+.|+|++|
T Consensus       108 ~~N~l~~l~~~~~~~l~-----------------------------------------------------~L~~L~L~~N  134 (290)
T 1p9a_G          108 SFNRLTSLPLGALRGLG-----------------------------------------------------ELQELYLKGN  134 (290)
T ss_dssp             CSSCCCCCCSSTTTTCT-----------------------------------------------------TCCEEECTTS
T ss_pred             CCCcCcccCHHHHcCCC-----------------------------------------------------CCCEEECCCC
Confidence            99999988777776654                                                     6899999999


Q ss_pred             CCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccC
Q 001313          916 RLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKI  993 (1102)
Q Consensus       916 ~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~  993 (1102)
                      ++++..+..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|+|+ .+|..+..+..|+.+++++|++.|.+
T Consensus       135 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c  211 (290)
T 1p9a_G          135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC  211 (290)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             CCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence            999888888999999999999999999888888899999999999999999 68888888899999999999998765

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=2.6e-22  Score=218.56  Aligned_cols=183  Identities=27%  Similarity=0.255  Sum_probs=162.1

Q ss_pred             cCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccC
Q 001313          780 LTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNN  859 (1102)
Q Consensus       780 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~  859 (1102)
                      ++++.|++++|.+++..|..|..+++|++|+|++|++++..+.  ..+++|++|++++|+++ .+|..+..+.       
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~-------  100 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLP-------  100 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCT-------
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCC-cCchhhccCC-------
Confidence            6899999999999999899999999999999999999965443  78999999999999998 5565544333       


Q ss_pred             CCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCC
Q 001313          860 GSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHN  939 (1102)
Q Consensus       860 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N  939 (1102)
                                                                    .|+.|+|++|++++..|..|..+++|++|+|++|
T Consensus       101 ----------------------------------------------~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N  134 (290)
T 1p9a_G          101 ----------------------------------------------ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN  134 (290)
T ss_dssp             ----------------------------------------------TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS
T ss_pred             ----------------------------------------------CCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC
Confidence                                                          6899999999999888889999999999999999


Q ss_pred             CCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCCccccccCCCCccccCCCCCCCCCCC
Q 001313          940 NLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPL 1019 (1102)
Q Consensus       940 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~gN~~lC~~~~ 1019 (1102)
                      +|++..+..|..+++|+.|+|++|+|++..+..|..+++|++|++++|+++ .+|........+..+.+.+||+.|+|.+
T Consensus       135 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~~  213 (290)
T 1p9a_G          135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEI  213 (290)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred             CCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCcc
Confidence            999998999999999999999999999777777889999999999999999 5666566677788889999999998753

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=5.6e-23  Score=222.36  Aligned_cols=227  Identities=25%  Similarity=0.248  Sum_probs=166.3

Q ss_pred             cCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccC
Q 001313          662 LIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISD  741 (1102)
Q Consensus       662 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~  741 (1102)
                      +..+++..+.+...  .....+++|+.|++++|.++ .++ .+..+++|++|++++|.+++.  ..+..+++|++|++++
T Consensus        21 l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~   94 (272)
T 3rfs_A           21 TIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTG   94 (272)
T ss_dssp             HHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTT
T ss_pred             HHHHHhcCcccccc--cccccccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCC
Confidence            33444444444322  22445666777777777665 222 366677777777777777653  3567777777777777


Q ss_pred             cccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCc
Q 001313          742 NNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVP  821 (1102)
Q Consensus       742 n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  821 (1102)
                      |.+++                        ++...|.++++|++|++++|++++..+..+..+++|++|++++|++++..+
T Consensus        95 n~l~~------------------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  150 (272)
T 3rfs_A           95 NQLQS------------------------LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK  150 (272)
T ss_dssp             SCCCC------------------------CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CccCc------------------------cChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCH
Confidence            77663                        222256677778888888888877777777888888888888888887777


Q ss_pred             hhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccC
Q 001313          822 IQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQG  901 (1102)
Q Consensus       822 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  901 (1102)
                      ..+..+++|+.|++++|++++..|..|..++                                                 
T Consensus       151 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-------------------------------------------------  181 (272)
T 3rfs_A          151 GVFDKLTNLTELDLSYNQLQSLPEGVFDKLT-------------------------------------------------  181 (272)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-------------------------------------------------
T ss_pred             HHhccCccCCEEECCCCCcCccCHHHhcCCc-------------------------------------------------
Confidence            7778888888888888888877666655443                                                 


Q ss_pred             CcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCC
Q 001313          902 RVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNT  978 (1102)
Q Consensus       902 ~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  978 (1102)
                          .|+.|+|++|++++..|..|+.+++|+.|+|++|.+++..|       +|+.|+++.|+++|.+|.+++.+..
T Consensus       182 ----~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~-------~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          182 ----QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP-------GIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             ----TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT-------TTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             ----cCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc-------HHHHHHHHHHhCCCcccCcccccCC
Confidence                67888999999988888888999999999999998886544       6889999999999999998876543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=2.3e-21  Score=207.05  Aligned_cols=181  Identities=26%  Similarity=0.255  Sum_probs=151.4

Q ss_pred             cEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcC
Q 001313          758 EQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSN  837 (1102)
Q Consensus       758 ~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~  837 (1102)
                      ++++++++.+. .+|. .+.  ++++.|++++|.+++..+..|.++++|++|+|++|++++..|..|..+++|++|+|++
T Consensus        17 ~~l~~~~~~l~-~~p~-~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   92 (251)
T 3m19_A           17 KEVDCQGKSLD-SVPS-GIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN   92 (251)
T ss_dssp             TEEECTTCCCS-SCCS-CCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             eEEecCCCCcc-ccCC-CCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence            34444444443 3555 332  5788899999999988888889999999999999999988888889999999999999


Q ss_pred             ccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCC
Q 001313          838 NNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRL  917 (1102)
Q Consensus       838 N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l  917 (1102)
                      |++++..|..|..+.                                                     .|+.|+|++|++
T Consensus        93 n~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~L~~N~l  119 (251)
T 3m19_A           93 NQLASLPLGVFDHLT-----------------------------------------------------QLDKLYLGGNQL  119 (251)
T ss_dssp             SCCCCCCTTTTTTCT-----------------------------------------------------TCCEEECCSSCC
T ss_pred             CcccccChhHhcccC-----------------------------------------------------CCCEEEcCCCcC
Confidence            999877776665544                                                     688999999999


Q ss_pred             CCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCCc
Q 001313          918 IGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPE  995 (1102)
Q Consensus       918 ~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~  995 (1102)
                      ++..+..|..+++|++|+|++|+|++..+..|+.+++|+.|||++|++++..|..+..+++|++|++++|+++|....
T Consensus       120 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~  197 (251)
T 3m19_A          120 KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCE  197 (251)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTT
T ss_pred             CCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccc
Confidence            987777789999999999999999988888899999999999999999988888899999999999999999987444

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.85  E-value=6.6e-23  Score=231.95  Aligned_cols=68  Identities=19%  Similarity=0.188  Sum_probs=42.6

Q ss_pred             CCceEECCCCCCCCCCc----ccccCCCcCCEEECCCCCCCCCCc-------ccccCCCcCCEEeCCCCcCcccCchhh
Q 001313          906 LLSGLDLSCNRLIGHIP----PQIGNLTKIQTLNLSHNNLAGPIP-------STFSNLRNIESLDLSYNKLSWKIPYQL  973 (1102)
Q Consensus       906 ~L~~L~Ls~N~l~~~ip----~~~~~l~~L~~L~Ls~N~l~~~~p-------~~~~~l~~L~~L~Ls~N~l~~~~p~~l  973 (1102)
                      .|+.|||++|.+++..+    ..+..+++|++|+|++|.+++..+       ..+..+++|+.||+++|++....|..+
T Consensus       226 ~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~  304 (362)
T 3goz_A          226 HVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPI  304 (362)
T ss_dssp             TCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHH
T ss_pred             CceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHH
Confidence            46667777776665444    234556677777777777554433       356667777777777777776544444

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=2.2e-21  Score=205.68  Aligned_cols=77  Identities=19%  Similarity=0.225  Sum_probs=41.8

Q ss_pred             CCc-eEECCCCCCCCCCccc-ccCCCcCCEEECCCCC-CCCCCcccccCC-CcCCEEeCCCCcCcccCchhhhcCCCCCE
Q 001313          906 LLS-GLDLSCNRLIGHIPPQ-IGNLTKIQTLNLSHNN-LAGPIPSTFSNL-RNIESLDLSYNKLSWKIPYQLVELNTLAV  981 (1102)
Q Consensus       906 ~L~-~L~Ls~N~l~~~ip~~-~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  981 (1102)
                      .|+ .|++++|+++ .+|.. |.. ++|+.|+|++|. +++..+..|.++ ++|+.||+++|++++ +|..  .+++|+.
T Consensus       156 ~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~  230 (239)
T 2xwt_C          156 NETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKE  230 (239)
T ss_dssp             SSEEEEECCSCCCC-EECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSE
T ss_pred             cceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCce
Confidence            345 5555555555 33332 333 566666666663 665555566666 666666666666663 3322  3455566


Q ss_pred             EEcccC
Q 001313          982 FSVAYN  987 (1102)
Q Consensus       982 l~ls~N  987 (1102)
                      |+++++
T Consensus       231 L~l~~~  236 (239)
T 2xwt_C          231 LIARNT  236 (239)
T ss_dssp             EECTTC
T ss_pred             eeccCc
Confidence            665544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.85  E-value=8.7e-23  Score=230.95  Aligned_cols=263  Identities=19%  Similarity=0.191  Sum_probs=183.1

Q ss_pred             eeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCC----ccccCCC-CccEEECCCCcccCCCcccccCC-----Cc
Q 001313          664 WLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIP----RWLGNLT-VLRHIIMPKNHIEGPIPLEFCQL-----RI  733 (1102)
Q Consensus       664 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p----~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l-----~~  733 (1102)
                      .++++.|.+++.+|..+...++|++|++++|.+++..+    ..+..++ +|++|++++|.+++..+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            35667777777666666666667777777777775555    5566666 67777777777776666655553     66


Q ss_pred             ccEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCc-cCccEEEccCccCcccCCccc----cC-CCCCC
Q 001313          734 LQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNC-LTLMILDLSYNHLNGNIPDRV----DG-LSQLS  807 (1102)
Q Consensus       734 L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~-~~L~~L~Ls~n~l~~~~p~~~----~~-l~~L~  807 (1102)
                      |++|++++|.+++..+..                   +.. .+..+ ++|++|++++|++++..+..+    .. .++|+
T Consensus        82 L~~L~Ls~n~l~~~~~~~-------------------l~~-~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~  141 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDE-------------------LVK-TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT  141 (362)
T ss_dssp             CCEEECCSSCGGGSCHHH-------------------HHH-HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCC
T ss_pred             ccEEECcCCcCChHHHHH-------------------HHH-HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCcee
Confidence            777777776665332211                   111 23444 788888888888887665443    33 36899


Q ss_pred             EEEccCccccccCc----hhhcCCC-CCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccc
Q 001313          808 YLILAHNNLEGEVP----IQLCRLN-QLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKK  882 (1102)
Q Consensus       808 ~L~L~~N~l~~~~p----~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  882 (1102)
                      +|+|++|++++..+    ..+..++ +|++|+|++|++++..+..+...-                              
T Consensus       142 ~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l------------------------------  191 (362)
T 3goz_A          142 SLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFL------------------------------  191 (362)
T ss_dssp             EEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH------------------------------
T ss_pred             EEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHH------------------------------
Confidence            99999999986444    3445565 899999999998876665443220                              


Q ss_pred             cccceeeeeccceeeeccCCcCCCCceEECCCCCCCCC----CcccccC-CCcCCEEECCCCCCCCCCc----ccccCCC
Q 001313          883 QILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGH----IPPQIGN-LTKIQTLNLSHNNLAGPIP----STFSNLR  953 (1102)
Q Consensus       883 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~----ip~~~~~-l~~L~~L~Ls~N~l~~~~p----~~~~~l~  953 (1102)
                                        ...+..|+.|||++|.+++.    ++..+.. .++|++|||++|.+++..+    ..+..++
T Consensus       192 ------------------~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~  253 (362)
T 3goz_A          192 ------------------ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLK  253 (362)
T ss_dssp             ------------------HTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTT
T ss_pred             ------------------HhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCC
Confidence                              00112689999999999864    4555555 3599999999999998766    4467789


Q ss_pred             cCCEEeCCCCcCcccCc-------hhhhcCCCCCEEEcccCcCcccCC
Q 001313          954 NIESLDLSYNKLSWKIP-------YQLVELNTLAVFSVAYNNLSGKIP  994 (1102)
Q Consensus       954 ~L~~L~Ls~N~l~~~~p-------~~l~~l~~L~~l~ls~N~l~~~~p  994 (1102)
                      +|+.|+|++|++.+..+       ..+..++.|+.||+++|++....|
T Consensus       254 ~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~  301 (362)
T 3goz_A          254 HLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS  301 (362)
T ss_dssp             TCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred             CccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence            99999999999654433       367788899999999999987644

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=1.2e-21  Score=216.59  Aligned_cols=80  Identities=29%  Similarity=0.388  Sum_probs=49.3

Q ss_pred             CCceEECCCCCCCCCCcccccCC---CcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEE
Q 001313          906 LLSGLDLSCNRLIGHIPPQIGNL---TKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVF  982 (1102)
Q Consensus       906 ~L~~L~Ls~N~l~~~ip~~~~~l---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l  982 (1102)
                      .|+.|||++|++++.+|+.+..+   ++|++|+|++|+|+ .+|..+.  ++|+.|||++|+|++. |. +..+++|+.|
T Consensus       225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L  299 (310)
T 4glp_A          225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNL  299 (310)
T ss_dssp             CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCE
T ss_pred             CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEE
Confidence            45566666666666556555555   46666666666666 4455553  5666777777777653 32 4556666777


Q ss_pred             EcccCcCc
Q 001313          983 SVAYNNLS  990 (1102)
Q Consensus       983 ~ls~N~l~  990 (1102)
                      ++++|+++
T Consensus       300 ~L~~N~l~  307 (310)
T 4glp_A          300 TLDGNPFL  307 (310)
T ss_dssp             ECSSTTTS
T ss_pred             ECcCCCCC
Confidence            77777665

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=3.4e-23  Score=236.98  Aligned_cols=247  Identities=17%  Similarity=0.224  Sum_probs=181.7

Q ss_pred             cCCCCcCCCCCCcEEEccCCcCCCCC----CccccCCCCccEEECCCC---cccCCCcccc-------cCCCcccEEEcc
Q 001313          675 EIPQSLSKCSSLQGLFLSNNSLSGKI----PRWLGNLTVLRHIIMPKN---HIEGPIPLEF-------CQLRILQILDIS  740 (1102)
Q Consensus       675 ~~~~~~~~l~~L~~L~l~~n~l~~~~----p~~~~~l~~L~~L~l~~n---~l~~~~~~~~-------~~l~~L~~L~ls  740 (1102)
                      .++..+..+++|++|++++|.+++..    +..+..+++|++|++++|   ++++.+|..+       ..+++|++|+++
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            34556677788888888888877543    344667788888888875   3444555444       566777777777


Q ss_pred             CcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCcccc----CC---------CCCC
Q 001313          741 DNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVD----GL---------SQLS  807 (1102)
Q Consensus       741 ~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~----~l---------~~L~  807 (1102)
                      +|.+++.-.                   ..+|. .+..+++|++|+|++|.+++..+..+.    .+         ++|+
T Consensus       103 ~n~l~~~~~-------------------~~l~~-~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~  162 (386)
T 2ca6_A          103 DNAFGPTAQ-------------------EPLID-FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLR  162 (386)
T ss_dssp             SCCCCTTTH-------------------HHHHH-HHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred             CCcCCHHHH-------------------HHHHH-HHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCc
Confidence            776653100                   02444 667778888888888888654443333    33         8899


Q ss_pred             EEEccCcccc-ccCc---hhhcCCCCCCEEECcCccCCC-----CCCcccccccccccccCCCCCCCccchhhhcCCccC
Q 001313          808 YLILAHNNLE-GEVP---IQLCRLNQLQLLDLSNNNLHG-----HIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDV  878 (1102)
Q Consensus       808 ~L~L~~N~l~-~~~p---~~~~~l~~L~~L~Ls~N~l~~-----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  878 (1102)
                      +|+|++|+++ +.+|   ..+..+++|++|++++|.++.     ..|..+..+                           
T Consensus       163 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~---------------------------  215 (386)
T 2ca6_A          163 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC---------------------------  215 (386)
T ss_dssp             EEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC---------------------------
T ss_pred             EEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcC---------------------------
Confidence            9999999987 4455   467788999999999998862     222233222                           


Q ss_pred             CccccccceeeeeccceeeeccCCcCCCCceEECCCCCCC----CCCcccccCCCcCCEEECCCCCCCCC----Ccccc-
Q 001313          879 DPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLI----GHIPPQIGNLTKIQTLNLSHNNLAGP----IPSTF-  949 (1102)
Q Consensus       879 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~----~~ip~~~~~l~~L~~L~Ls~N~l~~~----~p~~~-  949 (1102)
                                                +.|+.|+|++|.++    +.+|..+..+++|++|+|++|.+++.    +|..+ 
T Consensus       216 --------------------------~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~  269 (386)
T 2ca6_A          216 --------------------------QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS  269 (386)
T ss_dssp             --------------------------TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred             --------------------------CCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHh
Confidence                                      26889999999986    67888899999999999999999976    66777 


Q ss_pred             -cCCCcCCEEeCCCCcCcc----cCchhh-hcCCCCCEEEcccCcCcccCC
Q 001313          950 -SNLRNIESLDLSYNKLSW----KIPYQL-VELNTLAVFSVAYNNLSGKIP  994 (1102)
Q Consensus       950 -~~l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~l~ls~N~l~~~~p  994 (1102)
                       +.+++|+.|+|++|++++    .+|..+ .++++|++|++++|++++..|
T Consensus       270 ~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          270 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             hccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence             448999999999999998    588887 668999999999999998765

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=3.7e-21  Score=212.52  Aligned_cols=205  Identities=23%  Similarity=0.196  Sum_probs=131.7

Q ss_pred             CCccCeeeccCccCcccCCCCc--CCCCCCcEEEccCCcCCCCCC----ccccCCCCccEEECCCCcccCCCcccccCCC
Q 001313          659 LTNLIWLQLEGNHFVGEIPQSL--SKCSSLQGLFLSNNSLSGKIP----RWLGNLTVLRHIIMPKNHIEGPIPLEFCQLR  732 (1102)
Q Consensus       659 l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~p----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  732 (1102)
                      +++|++|++++|.+++..|..+  ..+++|++|++++|.+++..+    ..+..+++|++|++++|++++..+.      
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~------  163 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCE------  163 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTT------
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHH------
Confidence            3457777777777766666665  666667777777666664333    1222334444444444444333333      


Q ss_pred             cccEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCccc---C-CccccCCCCCCE
Q 001313          733 ILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGN---I-PDRVDGLSQLSY  808 (1102)
Q Consensus       733 ~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~---~-p~~~~~l~~L~~  808 (1102)
                                                                .|.++++|++|++++|++.+.   . +..+..+++|++
T Consensus       164 ------------------------------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~  201 (310)
T 4glp_A          164 ------------------------------------------QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQN  201 (310)
T ss_dssp             ------------------------------------------SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCS
T ss_pred             ------------------------------------------HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCE
Confidence                                                      444455555555555554431   1 223356677777


Q ss_pred             EEccCccccccCch----hhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccc
Q 001313          809 LILAHNNLEGEVPI----QLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQI  884 (1102)
Q Consensus       809 L~L~~N~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  884 (1102)
                      |+|++|+++. +|.    .+..+++|++|||++|++++..|..+..+.                                
T Consensus       202 L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~--------------------------------  248 (310)
T 4glp_A          202 LALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM--------------------------------  248 (310)
T ss_dssp             CBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC--------------------------------
T ss_pred             EECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc--------------------------------
Confidence            7777777762 222    246778888888888888877776654432                                


Q ss_pred             cceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCc
Q 001313          885 LESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNK  964 (1102)
Q Consensus       885 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  964 (1102)
                                        .++.|+.|+|++|+++ .+|..+.  ++|++|||++|+|++. |. +..+++|+.|+|++|+
T Consensus       249 ------------------~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          249 ------------------WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNP  305 (310)
T ss_dssp             ------------------CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTT
T ss_pred             ------------------CcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCC
Confidence                              1236888999999998 6777765  7999999999999965 33 6788999999999999


Q ss_pred             Ccc
Q 001313          965 LSW  967 (1102)
Q Consensus       965 l~~  967 (1102)
                      ++.
T Consensus       306 l~~  308 (310)
T 4glp_A          306 FLV  308 (310)
T ss_dssp             TSC
T ss_pred             CCC
Confidence            874

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.84  E-value=3.3e-20  Score=198.03  Aligned_cols=181  Identities=23%  Similarity=0.267  Sum_probs=165.0

Q ss_pred             cCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccC
Q 001313          780 LTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNN  859 (1102)
Q Consensus       780 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~  859 (1102)
                      ...+.++++++.++ .+|..+.  ++++.|+|++|++++..+..|.++++|++|+|++|.+++..|..|.+++       
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-------   83 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT-------   83 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-------
T ss_pred             CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCC-------
Confidence            45788999999998 5666655  6899999999999999999999999999999999999998887776654       


Q ss_pred             CCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCC
Q 001313          860 GSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHN  939 (1102)
Q Consensus       860 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N  939 (1102)
                                                                    .|+.|+|++|++++..+..|..+++|++|+|++|
T Consensus        84 ----------------------------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  117 (251)
T 3m19_A           84 ----------------------------------------------ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN  117 (251)
T ss_dssp             ----------------------------------------------TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             ----------------------------------------------cCCEEECCCCcccccChhHhcccCCCCEEEcCCC
Confidence                                                          6899999999999888888999999999999999


Q ss_pred             CCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCCccccccCCCCccccCCCCCCCC
Q 001313          940 NLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCG 1016 (1102)
Q Consensus       940 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~gN~~lC~ 1016 (1102)
                      +|++..+..|..+++|+.|+|++|+|++..|..+..+++|++|++++|++++..|..+..+..+..+.+.+|++.|.
T Consensus       118 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             cCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            99988888899999999999999999988777899999999999999999988887678888899999999999987

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=1.3e-20  Score=199.79  Aligned_cols=203  Identities=19%  Similarity=0.163  Sum_probs=111.3

Q ss_pred             CCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcc-cccccchhHhhcCCCCcEEEccc-cccCCcccc
Q 001313          577 HIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQ-LTGEIPEHLAMGCVSLRSLALSN-NNLEGHMFS  654 (1102)
Q Consensus       577 ~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~ip~~~~~~l~~L~~L~L~~-n~l~~~~~~  654 (1102)
                      .+|. +   .++|++|++++|++++..+..|.++++|++|++++|+ ++ .++...+.++++|++|++++ |++++..+.
T Consensus        25 ~ip~-~---~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~   99 (239)
T 2xwt_C           25 RIPS-L---PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPD   99 (239)
T ss_dssp             SCCC-C---CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred             ccCC-C---CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence            5665 2   3467777777777776666667777777777777775 55 55554444555555555555 555544444


Q ss_pred             cccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCcc---EEECCCC-cccCCCcccccC
Q 001313          655 RNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLR---HIIMPKN-HIEGPIPLEFCQ  730 (1102)
Q Consensus       655 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~  730 (1102)
                      .|.++++                        |++|++++|++++ +|. +..+++|+   .|++++| .+++..+..|..
T Consensus       100 ~f~~l~~------------------------L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~  153 (239)
T 2xwt_C          100 ALKELPL------------------------LKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQG  153 (239)
T ss_dssp             SEECCTT------------------------CCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTT
T ss_pred             HhCCCCC------------------------CCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccc
Confidence            4444444                        4444444444442 333 44444444   5555555 454444444555


Q ss_pred             CCccc-EEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCcc-CcccCCccccCC-CCCC
Q 001313          731 LRILQ-ILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNH-LNGNIPDRVDGL-SQLS  807 (1102)
Q Consensus       731 l~~L~-~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~-l~~~~p~~~~~l-~~L~  807 (1102)
                      +++|+ .|++++|+++                        .+|...|.. ++|+.|++++|+ +++..+..|.++ ++|+
T Consensus       154 l~~L~~~L~l~~n~l~------------------------~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~  208 (239)
T 2xwt_C          154 LCNETLTLKLYNNGFT------------------------SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPS  208 (239)
T ss_dssp             TBSSEEEEECCSCCCC------------------------EECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCS
T ss_pred             hhcceeEEEcCCCCCc------------------------ccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCc
Confidence            55555 5555555554                        233323333 455566666663 555555555666 6666


Q ss_pred             EEEccCccccccCchhhcCCCCCCEEECcCc
Q 001313          808 YLILAHNNLEGEVPIQLCRLNQLQLLDLSNN  838 (1102)
Q Consensus       808 ~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N  838 (1102)
                      .|++++|++++ +|..  .+++|+.|+++++
T Consensus       209 ~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          209 LLDVSQTSVTA-LPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             EEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred             EEECCCCcccc-CChh--HhccCceeeccCc
Confidence            66666666653 3322  4556666666554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.84  E-value=5.9e-22  Score=222.37  Aligned_cols=61  Identities=18%  Similarity=0.173  Sum_probs=30.6

Q ss_pred             CCCCCcEEEccCCcCCCC-CCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCc
Q 001313          682 KCSSLQGLFLSNNSLSGK-IPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDN  742 (1102)
Q Consensus       682 ~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n  742 (1102)
                      .+++|++|++++|.+++. +|..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus        91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~  152 (336)
T 2ast_B           91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC  152 (336)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred             cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCC
Confidence            345555555555554433 4444445555555555555554444444555555555555554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.83  E-value=4.2e-22  Score=227.92  Aligned_cols=248  Identities=19%  Similarity=0.224  Sum_probs=148.6

Q ss_pred             CCCchhhhcCCCCcEEEccCCcccccC----CcccCCCCCCcEEEccCc---ccccccchhH------hhcCCCCcEEEc
Q 001313          577 HIPLEIGDILSRLTVFNISMNALDGSI----PSSFGNMNFLQFLDLSNN---QLTGEIPEHL------AMGCVSLRSLAL  643 (1102)
Q Consensus       577 ~ip~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n---~l~~~ip~~~------~~~l~~L~~L~L  643 (1102)
                      .++..+.. +++|++|++++|.+....    +..+..+++|++|+|++|   ++++.+|..+      +..+++|++|++
T Consensus        23 ~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L  101 (386)
T 2ca6_A           23 SVFAVLLE-DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL  101 (386)
T ss_dssp             TTSHHHHH-CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred             HHHHHHhc-CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence            34444443 567777777777776542    234667777777777775   3444555444      234566666666


Q ss_pred             cccccCC----cccccccCCCccCeeeccCccCcccCCCCc----CCC---------CCCcEEEccCCcCC-CCCC---c
Q 001313          644 SNNNLEG----HMFSRNFNLTNLIWLQLEGNHFVGEIPQSL----SKC---------SSLQGLFLSNNSLS-GKIP---R  702 (1102)
Q Consensus       644 ~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l---------~~L~~L~l~~n~l~-~~~p---~  702 (1102)
                      ++|.++.    .++..+..+++|++|+|++|.++...+..+    ..+         ++|++|++++|+++ +.+|   .
T Consensus       102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~  181 (386)
T 2ca6_A          102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK  181 (386)
T ss_dssp             CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence            6666655    234444555566666666665543222222    222         55555566555554 2222   2


Q ss_pred             cccCCCCccEEECCCCcccC-----CCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCccccc
Q 001313          703 WLGNLTVLRHIIMPKNHIEG-----PIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFF  777 (1102)
Q Consensus       703 ~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~  777 (1102)
                      .+..+++|++|++++|.++.     ..|..+..+++|+.|+|++|.++..-                   .+.+|. .+.
T Consensus       182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g-------------------~~~l~~-~l~  241 (386)
T 2ca6_A          182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG-------------------SSALAI-ALK  241 (386)
T ss_dssp             HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH-------------------HHHHHH-HGG
T ss_pred             HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH-------------------HHHHHH-HHc
Confidence            34445555555555555541     12224444555555555555442100                   034565 777


Q ss_pred             CccCccEEEccCccCccc----CCcccc--CCCCCCEEEccCccccc----cCchhh-cCCCCCCEEECcCccCCCCCC
Q 001313          778 NCLTLMILDLSYNHLNGN----IPDRVD--GLSQLSYLILAHNNLEG----EVPIQL-CRLNQLQLLDLSNNNLHGHIP  845 (1102)
Q Consensus       778 ~~~~L~~L~Ls~n~l~~~----~p~~~~--~l~~L~~L~L~~N~l~~----~~p~~~-~~l~~L~~L~Ls~N~l~~~~p  845 (1102)
                      .+++|++|+|++|.+++.    +|..+.  .+++|+.|+|++|++++    .+|..+ .++++|+.|++++|++++..|
T Consensus       242 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          242 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            888899999999988865    556663  38899999999999987    477777 668999999999999987664

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.83  E-value=1.3e-21  Score=219.47  Aligned_cols=248  Identities=17%  Similarity=0.188  Sum_probs=172.9

Q ss_pred             cCeeeccCccCcccCCCCcCCC--CCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCC-CcccccCCCcccEEE
Q 001313          662 LIWLQLEGNHFVGEIPQSLSKC--SSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGP-IPLEFCQLRILQILD  738 (1102)
Q Consensus       662 L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~  738 (1102)
                      ++.++++++.+.   +..+..+  ++++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|+
T Consensus        49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence            455555555544   2334444  6777788888877765554 45678888888888887755 666777778888888


Q ss_pred             ccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCc-cCccc-CCccccCCCCCCEEEccCc-c
Q 001313          739 ISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYN-HLNGN-IPDRVDGLSQLSYLILAHN-N  815 (1102)
Q Consensus       739 ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n-~l~~~-~p~~~~~l~~L~~L~L~~N-~  815 (1102)
                      +++|.+++                       ..+. .+..+++|++|++++| .+++. ++..+..+++|++|++++| .
T Consensus       125 L~~~~l~~-----------------------~~~~-~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~  180 (336)
T 2ast_B          125 LEGLRLSD-----------------------PIVN-TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD  180 (336)
T ss_dssp             CTTCBCCH-----------------------HHHH-HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTT
T ss_pred             CcCcccCH-----------------------HHHH-HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCC
Confidence            77776653                       3344 5667788888888888 56652 5666777888888888888 7


Q ss_pred             cccc-CchhhcCCC-CCCEEECcCcc--CC-CCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeee
Q 001313          816 LEGE-VPIQLCRLN-QLQLLDLSNNN--LH-GHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDF  890 (1102)
Q Consensus       816 l~~~-~p~~~~~l~-~L~~L~Ls~N~--l~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  890 (1102)
                      +++. ++..+..++ +|++|++++|.  ++ +.+|..+..+                                       
T Consensus       181 l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~---------------------------------------  221 (336)
T 2ast_B          181 FTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC---------------------------------------  221 (336)
T ss_dssp             CCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHC---------------------------------------
T ss_pred             cChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhC---------------------------------------
Confidence            7754 567778888 88888888883  43 2233322222                                       


Q ss_pred             eccceeeeccCCcCCCCceEECCCCC-CCCCCcccccCCCcCCEEECCCCCCCCCCcc---cccCCCcCCEEeCCCCcCc
Q 001313          891 TTKSITYTYQGRVPSLLSGLDLSCNR-LIGHIPPQIGNLTKIQTLNLSHNNLAGPIPS---TFSNLRNIESLDLSYNKLS  966 (1102)
Q Consensus       891 ~~~~~~~~~~~~~~~~L~~L~Ls~N~-l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~Ls~N~l~  966 (1102)
                                    +.|+.|++++|. +++..+..+..+++|++|+|++|.  +..+.   .++++++|+.|++++| ++
T Consensus       222 --------------~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~l~~~~~L~~L~l~~~-i~  284 (336)
T 2ast_B          222 --------------PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY--DIIPETLLELGEIPTLKTLQVFGI-VP  284 (336)
T ss_dssp             --------------TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT--TCCGGGGGGGGGCTTCCEEECTTS-SC
T ss_pred             --------------CCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC--CCCHHHHHHHhcCCCCCEEeccCc-cC
Confidence                          267888888888 677777788888999999999885  33344   5778889999999988 44


Q ss_pred             ccCchhhhcC-CCCCEEEcccCcCcccCCcc
Q 001313          967 WKIPYQLVEL-NTLAVFSVAYNNLSGKIPER  996 (1102)
Q Consensus       967 ~~~p~~l~~l-~~L~~l~ls~N~l~~~~p~~  996 (1102)
                      ..   .+..+ ..+..|++++|++++..|..
T Consensus       285 ~~---~~~~l~~~l~~L~l~~n~l~~~~~~~  312 (336)
T 2ast_B          285 DG---TLQLLKEALPHLQINCSHFTTIARPT  312 (336)
T ss_dssp             TT---CHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred             HH---HHHHHHhhCcceEEecccCccccCCc
Confidence            22   23333 23566678899998888763

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.82  E-value=6.1e-20  Score=202.08  Aligned_cols=126  Identities=22%  Similarity=0.315  Sum_probs=61.6

Q ss_pred             CCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEE
Q 001313          682 KCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVH  761 (1102)
Q Consensus       682 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~  761 (1102)
                      .+++|++|++++|.++. +| .+..+++|+.|++++|.+++..+  +..+++|++|++++|++++               
T Consensus        39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~---------------   99 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN---------------   99 (308)
T ss_dssp             HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC---------------
T ss_pred             HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC---------------
Confidence            34555555555555542 33 34455555555555555543322  4555555555555554431               


Q ss_pred             ccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCC
Q 001313          762 LSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH  841 (1102)
Q Consensus       762 l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  841 (1102)
                               ++  .+..+++|++|++++|++++. + .+..+++|++|++++|++++..+  +..+++|+.|++++|.++
T Consensus       100 ---------~~--~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~  164 (308)
T 1h6u_A          100 ---------VS--AIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS  164 (308)
T ss_dssp             ---------CG--GGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred             ---------ch--hhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC
Confidence                     11  344445555555555555542 1 24555555555555555553322  444555555555544443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.82  E-value=8.1e-20  Score=201.08  Aligned_cols=195  Identities=24%  Similarity=0.322  Sum_probs=158.4

Q ss_pred             cCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccE
Q 001313          705 GNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMI  784 (1102)
Q Consensus       705 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~  784 (1102)
                      ..+++|+.|++++|.++. ++ .+..+++|++|++++|.++                        .++.  +..+++|++
T Consensus        38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~------------------------~~~~--~~~l~~L~~   89 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQIT------------------------DLAP--LKNLTKITE   89 (308)
T ss_dssp             HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC------------------------CCGG--GTTCCSCCE
T ss_pred             HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCC------------------------CChh--HccCCCCCE
Confidence            456667777777777664 33 4666667777777666655                        2333  788899999


Q ss_pred             EEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCC
Q 001313          785 LDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQ  864 (1102)
Q Consensus       785 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~  864 (1102)
                      |++++|++++.  ..+..+++|++|++++|++++. +. +..+++|+.|++++|.+++..+  +..++            
T Consensus        90 L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~------------  151 (308)
T 1h6u_A           90 LELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDV-TP-LAGLSNLQVLYLDLNQITNISP--LAGLT------------  151 (308)
T ss_dssp             EECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCT------------
T ss_pred             EEccCCcCCCc--hhhcCCCCCCEEECCCCCCCCc-hh-hcCCCCCCEEECCCCccCcCcc--ccCCC------------
Confidence            99999999864  4689999999999999999964 43 8999999999999999986544  33332            


Q ss_pred             CccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCC
Q 001313          865 PFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGP  944 (1102)
Q Consensus       865 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~  944 (1102)
                                                               .|+.|+|++|++++..+  +..+++|+.|+|++|.+++.
T Consensus       152 -----------------------------------------~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~  188 (308)
T 1h6u_A          152 -----------------------------------------NLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDI  188 (308)
T ss_dssp             -----------------------------------------TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred             -----------------------------------------CccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcC
Confidence                                                     68999999999997444  99999999999999999976


Q ss_pred             CcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCccc
Q 001313          945 IPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGK  992 (1102)
Q Consensus       945 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~  992 (1102)
                      .+  +..+++|+.|+|++|++++..|  +..+++|+.|++++|++++.
T Consensus       189 ~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~  232 (308)
T 1h6u_A          189 SP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQ  232 (308)
T ss_dssp             GG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECC
T ss_pred             hh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecC
Confidence            55  8899999999999999997653  88999999999999999863

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=2.4e-19  Score=201.55  Aligned_cols=244  Identities=17%  Similarity=0.117  Sum_probs=163.5

Q ss_pred             CEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcE-EEc
Q 001313          565 RLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRS-LAL  643 (1102)
Q Consensus       565 ~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~-L~L  643 (1102)
                      +.++.++++++ .||..+   .+++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+.+|...|.+++++++ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            57888888888 788765   4678888888888887666778888888888888888876777777767766654 455


Q ss_pred             cccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccC-CcCCCCCCccccCCCCccEEECCCCcccC
Q 001313          644 SNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSN-NSLSGKIPRWLGNLTVLRHIIMPKNHIEG  722 (1102)
Q Consensus       644 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  722 (1102)
                      ..|+++.+.+..|.++++|++|++++|++.+..+..+....++..+++.+ +++....+..|..+.              
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~--------------  153 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS--------------  153 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB--------------
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcc--------------
Confidence            56667666666666666666666666666655554555555555555544 333322223333322              


Q ss_pred             CCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccC
Q 001313          723 PIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDG  802 (1102)
Q Consensus       723 ~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~  802 (1102)
                               ..++.|++++|+++...+..+...+++++++.+++..+.+|...|.++++|++||+++|+++...+..+  
T Consensus       154 ---------~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~--  222 (350)
T 4ay9_X          154 ---------FESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL--  222 (350)
T ss_dssp             ---------SSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC--
T ss_pred             ---------hhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh--
Confidence                     235555555555554444444555666666655444446887789999999999999999996554444  


Q ss_pred             CCCCCEEEccCccccccCchhhcCCCCCCEEECcCcc
Q 001313          803 LSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNN  839 (1102)
Q Consensus       803 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~  839 (1102)
                       .+|+.|.+.++.--..+| .+..+++|+.++++++.
T Consensus       223 -~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          223 -ENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPS  257 (350)
T ss_dssp             -TTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred             -ccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence             456666665554444677 47889999999998654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.81  E-value=2.7e-19  Score=201.08  Aligned_cols=206  Identities=21%  Similarity=0.180  Sum_probs=127.0

Q ss_pred             cEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccCccCcccCC-CCcCCCCCCcE-EEc
Q 001313          614 QFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIP-QSLSKCSSLQG-LFL  691 (1102)
Q Consensus       614 ~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~-L~l  691 (1102)
                      ++++.++++++ .||..+   .+++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+.+| .+|.+++++++ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            45666666666 666554   2456666666666666555666667777777777776655444 35666666554 455


Q ss_pred             cCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCc-ccccCCCCCCCCccccEEEccCcccccc
Q 001313          692 SNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDN-NISGSLPSCYDFVCIEQVHLSKNMLHGQ  770 (1102)
Q Consensus       692 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n-~l~~~~p~~~~~~~L~~L~l~~n~l~~~  770 (1102)
                      +.|++++..|..|..+++|++|++++|++++..+..+....++..+++.++ ++.                        .
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~------------------------~  143 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH------------------------T  143 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC------------------------E
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc------------------------c
Confidence            566676666666677777777777777766555555555555666666442 332                        3


Q ss_pred             cCcccccCcc-CccEEEccCccCcccCCccccCCCCCCEEEccC-ccccccCchhhcCCCCCCEEECcCccCCCCCCccc
Q 001313          771 LKEGTFFNCL-TLMILDLSYNHLNGNIPDRVDGLSQLSYLILAH-NNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCF  848 (1102)
Q Consensus       771 i~~~~~~~~~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  848 (1102)
                      ++...|..+. .++.|++++|+++...+..| ...+|++|++++ |.++...+..|..+++|++|||++|+|+...+..|
T Consensus       144 l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~  222 (350)
T 4ay9_X          144 IERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL  222 (350)
T ss_dssp             ECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC
T ss_pred             ccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh
Confidence            4444555543 47777888888775444333 446677777764 55554334567777788888888887775444333

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.80  E-value=3e-19  Score=210.47  Aligned_cols=115  Identities=24%  Similarity=0.344  Sum_probs=60.7

Q ss_pred             CccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEcc
Q 001313          709 VLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLS  788 (1102)
Q Consensus       709 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls  788 (1102)
                      +++.|++++|.+++ +|..+  .++|+.|++++|+++ .+|  ..+++|+.|++++|++++ +|.  +.+  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip--~~l~~L~~L~Ls~N~l~~-ip~--l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP--ELPASLEYLDACDNRLST-LPE--LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC--CCCTTCCEEECCSSCCSC-CCC--CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc--cccCCCCEEEccCCCCCC-cch--hhc--CCCEEECC
Confidence            67777777777765 45444  256777777777766 344  223455555555555554 443  222  45555555


Q ss_pred             CccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCC
Q 001313          789 YNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHG  842 (1102)
Q Consensus       789 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  842 (1102)
                      +|++++ +|.   .+++|+.|+|++|++++ +|.   .+++|+.|+|++|++++
T Consensus       129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~  174 (571)
T 3cvr_A          129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF  174 (571)
T ss_dssp             SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred             CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC
Confidence            555554 333   34455555555555543 333   34455555555555443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.79  E-value=5.9e-19  Score=182.43  Aligned_cols=176  Identities=24%  Similarity=0.240  Sum_probs=143.3

Q ss_pred             EEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCc
Q 001313          759 QVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNN  838 (1102)
Q Consensus       759 ~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N  838 (1102)
                      .++.+++.++ .+|. .+  .++|++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|
T Consensus        11 ~v~c~~~~l~-~~p~-~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           11 TVECYSQGRT-SVPT-GI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             EEECCSSCCS-SCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEEecCCCcc-CCCC-CC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            3444444443 3454 22  357889999999998877777888999999999999999777777888999999999999


Q ss_pred             cCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCC
Q 001313          839 NLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLI  918 (1102)
Q Consensus       839 ~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~  918 (1102)
                      ++++..+..|.++.                                                     .|+.|+|++|+++
T Consensus        87 ~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~L~~N~l~  113 (208)
T 2o6s_A           87 QLQSLPNGVFDKLT-----------------------------------------------------QLKELALNTNQLQ  113 (208)
T ss_dssp             CCCCCCTTTTTTCT-----------------------------------------------------TCCEEECCSSCCC
T ss_pred             cCCccCHhHhcCcc-----------------------------------------------------CCCEEEcCCCcCc
Confidence            99877666665544                                                     6889999999999


Q ss_pred             CCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCCcccc
Q 001313          919 GHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAA  998 (1102)
Q Consensus       919 ~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~  998 (1102)
                      +..+..|..+++|++|+|++|++++..+..|..+++|+.|++++|.+.+..       +.|++|+++.|+++|.+|..++
T Consensus       114 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~-------~~l~~L~~~~n~~~g~ip~~~~  186 (208)
T 2o6s_A          114 SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC-------PGIRYLSEWINKHSGVVRNSAG  186 (208)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT-------TTTHHHHHHHHHCTTTBBCTTS
T ss_pred             ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCC-------CCHHHHHHHHHhCCceeeccCc
Confidence            877777899999999999999999888888999999999999999888643       5788899999999999997444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.79  E-value=6.3e-19  Score=207.68  Aligned_cols=138  Identities=27%  Similarity=0.359  Sum_probs=110.5

Q ss_pred             CCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccC
Q 001313          685 SLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSK  764 (1102)
Q Consensus       685 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~  764 (1102)
                      +|+.|++++|.+++ +|..+.  ++|+.|++++|.++ .+|   ..+++|+.|++++|++++ +|. +.. +|+.|++++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~-~L~~L~Ls~  129 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA-SLKHLDVDN  129 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT-TCCEEECCS
T ss_pred             CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc-CCCEEECCC
Confidence            78999999999886 676553  78999999999988 566   457889999999999987 666 322 899999999


Q ss_pred             cccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCC
Q 001313          765 NMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHI  844 (1102)
Q Consensus       765 n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  844 (1102)
                      |++++ +|.    .+++|+.|++++|++++ +|.   .+++|++|+|++|++++ +|. |.  ++|+.|+|++|+|+ .+
T Consensus       130 N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l  195 (571)
T 3cvr_A          130 NQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL  195 (571)
T ss_dssp             SCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred             CcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence            99887 665    57889999999999986 555   57889999999999986 666 55  88888888888887 44


Q ss_pred             Cc
Q 001313          845 PS  846 (1102)
Q Consensus       845 p~  846 (1102)
                      |.
T Consensus       196 p~  197 (571)
T 3cvr_A          196 PA  197 (571)
T ss_dssp             CC
T ss_pred             hh
Confidence            44

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.79  E-value=3.2e-19  Score=185.55  Aligned_cols=157  Identities=22%  Similarity=0.252  Sum_probs=130.0

Q ss_pred             cEEEccCccCcccCCccccCCCCCCEEEccCccccccCc-hhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCC
Q 001313          783 MILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVP-IQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGS  861 (1102)
Q Consensus       783 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~  861 (1102)
                      +.+++++|.++. +|..+.  ..+++|+|++|++++..| ..|..+++|+.|+|++|++++..|..|.++.         
T Consensus        14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~---------   81 (220)
T 2v70_A           14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS---------   81 (220)
T ss_dssp             TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT---------
T ss_pred             CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC---------
Confidence            467777777764 555443  356788888888887654 4577888888888888888877776666554         


Q ss_pred             CCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCC
Q 001313          862 SLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNL  941 (1102)
Q Consensus       862 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l  941 (1102)
                                                                  .|+.|+|++|++++..|..|..+++|++|+|++|+|
T Consensus        82 --------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  117 (220)
T 2v70_A           82 --------------------------------------------GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI  117 (220)
T ss_dssp             --------------------------------------------TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCC
T ss_pred             --------------------------------------------CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcC
Confidence                                                        678889999999888888899999999999999999


Q ss_pred             CCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCCc
Q 001313          942 AGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPE  995 (1102)
Q Consensus       942 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~  995 (1102)
                      ++..|..|.++++|+.|+|++|+|++..|..|..+++|++|++++|+++|.++.
T Consensus       118 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  171 (220)
T 2v70_A          118 TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL  171 (220)
T ss_dssp             CCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred             CeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence            999999999999999999999999998899999999999999999999987763

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.79  E-value=1e-18  Score=180.60  Aligned_cols=60  Identities=25%  Similarity=0.245  Sum_probs=25.8

Q ss_pred             CCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCccc
Q 001313          685 SLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNI  744 (1102)
Q Consensus       685 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l  744 (1102)
                      +|++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l   88 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL   88 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence            444444444444433333344444444444444444433333334444444444444443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.77  E-value=2.4e-18  Score=178.89  Aligned_cols=156  Identities=23%  Similarity=0.272  Sum_probs=112.1

Q ss_pred             cEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCC
Q 001313          783 MILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSS  862 (1102)
Q Consensus       783 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~  862 (1102)
                      +.++++++.++ .+|..+.  ++|+.|++++|++++..+..|..+++|+.|+|++|++++..|..|.++.          
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~----------   80 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR----------   80 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCS----------
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc----------
Confidence            34566666655 3444333  4666677777766665556666677777777777777666666655543          


Q ss_pred             CCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCC
Q 001313          863 LQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLA  942 (1102)
Q Consensus       863 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~  942 (1102)
                                                                 .|+.|+|++|++++..+..|..+++|++|+|++|+|+
T Consensus        81 -------------------------------------------~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~  117 (220)
T 2v9t_B           81 -------------------------------------------SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN  117 (220)
T ss_dssp             -------------------------------------------SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             -------------------------------------------CCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCC
Confidence                                                       5677777777777555556778888888888888888


Q ss_pred             CCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCC
Q 001313          943 GPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIP  994 (1102)
Q Consensus       943 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p  994 (1102)
                      +..|..|.++++|+.|+|++|+|++..+..+..+++|+.|++++|++.+.++
T Consensus       118 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  169 (220)
T 2v9t_B          118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH  169 (220)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence            8888888888888888888888887777778888888888888888877554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.76  E-value=5.6e-18  Score=177.45  Aligned_cols=157  Identities=22%  Similarity=0.220  Sum_probs=121.0

Q ss_pred             ccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCC
Q 001313          782 LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGS  861 (1102)
Q Consensus       782 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~  861 (1102)
                      -+.++.+++.++ .+|..+.  ++|++|+|++|++++..|..|..+++|++|+|++|++++..+..|..+.         
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~---------   88 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT---------   88 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT---------
T ss_pred             CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCC---------
Confidence            345666666665 4454433  6777777777777777777777777777888887777655555554443         


Q ss_pred             CCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCC
Q 001313          862 SLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNL  941 (1102)
Q Consensus       862 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l  941 (1102)
                                                                  .|+.|+|++|++++..+..|..+++|++|+|++|+|
T Consensus        89 --------------------------------------------~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l  124 (229)
T 3e6j_A           89 --------------------------------------------QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL  124 (229)
T ss_dssp             --------------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             --------------------------------------------CcCEEECCCCcCCccChhHhCcchhhCeEeccCCcc
Confidence                                                        577888888888877777788888999999999999


Q ss_pred             CCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCCc
Q 001313          942 AGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPE  995 (1102)
Q Consensus       942 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~  995 (1102)
                      + .+|..+..+++|+.|+|++|+|++..+..+..+++|+.|++++|++.|.++.
T Consensus       125 ~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  177 (229)
T 3e6j_A          125 T-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRD  177 (229)
T ss_dssp             C-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGG
T ss_pred             c-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcch
Confidence            8 7788888899999999999999977777788899999999999999887764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.76  E-value=1.6e-18  Score=195.51  Aligned_cols=181  Identities=25%  Similarity=0.231  Sum_probs=157.6

Q ss_pred             ccEEEccCcccccccCcccccCccCccEEEccCccCcccCCcccc-CCCCCCEEEccCccccccCchhhcCCCCCCEEEC
Q 001313          757 IEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVD-GLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDL  835 (1102)
Q Consensus       757 L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  835 (1102)
                      -+.++++++.+.. +|. .+.  ..++.|+|++|++++..+..+. ++++|++|+|++|++++..|..|..+++|++|+|
T Consensus        20 ~~~l~c~~~~l~~-iP~-~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L   95 (361)
T 2xot_A           20 SNILSCSKQQLPN-VPQ-SLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL   95 (361)
T ss_dssp             TTEEECCSSCCSS-CCS-SCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCEEEeCCCCcCc-cCc-cCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence            3688999999874 776 333  4689999999999998888888 9999999999999999888889999999999999


Q ss_pred             cCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCC
Q 001313          836 SNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCN  915 (1102)
Q Consensus       836 s~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N  915 (1102)
                      ++|++++..+..|.++.                                                     .|+.|+|++|
T Consensus        96 s~N~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~L~~N  122 (361)
T 2xot_A           96 SSNHLHTLDEFLFSDLQ-----------------------------------------------------ALEVLLLYNN  122 (361)
T ss_dssp             CSSCCCEECTTTTTTCT-----------------------------------------------------TCCEEECCSS
T ss_pred             CCCcCCcCCHHHhCCCc-----------------------------------------------------CCCEEECCCC
Confidence            99999987777776554                                                     6899999999


Q ss_pred             CCCCCCcccccCCCcCCEEECCCCCCCCCCcccc---cCCCcCCEEeCCCCcCcccCchhhhcCCC--CCEEEcccCcCc
Q 001313          916 RLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTF---SNLRNIESLDLSYNKLSWKIPYQLVELNT--LAVFSVAYNNLS  990 (1102)
Q Consensus       916 ~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~l~ls~N~l~  990 (1102)
                      ++++..|..|..+++|+.|+|++|+|++..+..|   ..+++|+.|||++|+|++..+..+..++.  ++.|++++|++.
T Consensus       123 ~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          123 HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             cccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            9999889999999999999999999998777767   67999999999999999877778888887  488999999999


Q ss_pred             ccCC
Q 001313          991 GKIP  994 (1102)
Q Consensus       991 ~~~p  994 (1102)
                      |.+.
T Consensus       203 C~C~  206 (361)
T 2xot_A          203 CDCK  206 (361)
T ss_dssp             CCHH
T ss_pred             CCcC
Confidence            8654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.76  E-value=3.3e-18  Score=177.82  Aligned_cols=157  Identities=22%  Similarity=0.295  Sum_probs=141.7

Q ss_pred             CEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccc
Q 001313          807 SYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILE  886 (1102)
Q Consensus       807 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  886 (1102)
                      +.+++++|.++ .+|..+.  ++|+.|++++|.+++..|..|..++                                  
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~----------------------------------   56 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYK----------------------------------   56 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCT----------------------------------
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCC----------------------------------
Confidence            57899999998 5676554  7899999999999987777776554                                  


Q ss_pred             eeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCc
Q 001313          887 SFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS  966 (1102)
Q Consensus       887 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  966 (1102)
                                         .|+.|+|++|++++..|..|.++++|++|+|++|+|++..+..|.++++|+.|+|++|+|+
T Consensus        57 -------------------~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~  117 (220)
T 2v9t_B           57 -------------------KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN  117 (220)
T ss_dssp             -------------------TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             -------------------CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCC
Confidence                               6899999999999999999999999999999999999888888999999999999999999


Q ss_pred             ccCchhhhcCCCCCEEEcccCcCcccCCccccccCCCCccccCCCCCCCCCCC
Q 001313          967 WKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPL 1019 (1102)
Q Consensus       967 ~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~gN~~lC~~~~ 1019 (1102)
                      +..|..|..+++|++|++++|++++..+..+..+..+..+.+.+||+.|+|.+
T Consensus       118 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l  170 (220)
T 2v9t_B          118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL  170 (220)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred             EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence            99999999999999999999999998887677888889999999999998754

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.75  E-value=3.4e-18  Score=192.86  Aligned_cols=177  Identities=27%  Similarity=0.253  Sum_probs=151.9

Q ss_pred             cEEEccCcccccCCCCCCCCccccEEEccCcccccccCccccc-CccCccEEEccCccCcccCCccccCCCCCCEEEccC
Q 001313          735 QILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFF-NCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAH  813 (1102)
Q Consensus       735 ~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~-~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~  813 (1102)
                      +.++++++.++. +|..+ ...++.|++++|++++ ++...|. ++++|+.|+|++|++++..|..|.++++|++|+|++
T Consensus        21 ~~l~c~~~~l~~-iP~~~-~~~l~~L~Ls~N~l~~-l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQSL-PSYTALLDLSHNNLSR-LRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSS-CCSSC-CTTCSEEECCSSCCCE-ECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCc-cCccC-CCCCCEEECCCCCCCc-cChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            689999999885 55433 3468999999999986 4444787 899999999999999998888999999999999999


Q ss_pred             ccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeecc
Q 001313          814 NNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTK  893 (1102)
Q Consensus       814 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  893 (1102)
                      |++++..+..|..+++|+.|+|++|++++..|..|.++.                                         
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~-----------------------------------------  136 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA-----------------------------------------  136 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-----------------------------------------
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcc-----------------------------------------
Confidence            999988888899999999999999999988888776654                                         


Q ss_pred             ceeeeccCCcCCCCceEECCCCCCCCCCcccc---cCCCcCCEEECCCCCCCCCCcccccCCCc--CCEEeCCCCcCcc
Q 001313          894 SITYTYQGRVPSLLSGLDLSCNRLIGHIPPQI---GNLTKIQTLNLSHNNLAGPIPSTFSNLRN--IESLDLSYNKLSW  967 (1102)
Q Consensus       894 ~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~---~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~--L~~L~Ls~N~l~~  967 (1102)
                                  .|+.|+|++|++++..+..|   ..+++|+.|||++|+|++..+..|..++.  ++.|+|++|.+..
T Consensus       137 ------------~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          137 ------------QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             ------------TCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             ------------cCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence                        68999999999997555555   67999999999999999888888888887  4899999999985

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.75  E-value=9.6e-18  Score=174.33  Aligned_cols=137  Identities=19%  Similarity=0.187  Sum_probs=116.9

Q ss_pred             CccEEEccCccCcccCC-ccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccC
Q 001313          781 TLMILDLSYNHLNGNIP-DRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNN  859 (1102)
Q Consensus       781 ~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~  859 (1102)
                      .+++|++++|++++..| ..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..|..|.++.       
T Consensus        33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-------  105 (220)
T 2v70_A           33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLE-------  105 (220)
T ss_dssp             TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCS-------
T ss_pred             CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCc-------
Confidence            46788888888887654 4577888888888888888877777888888888888888888877777666554       


Q ss_pred             CCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCC
Q 001313          860 GSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHN  939 (1102)
Q Consensus       860 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N  939 (1102)
                                                                    .|++|+|++|++++..|..|..+++|++|+|++|
T Consensus       106 ----------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  139 (220)
T 2v70_A          106 ----------------------------------------------SLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN  139 (220)
T ss_dssp             ----------------------------------------------SCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS
T ss_pred             ----------------------------------------------CCCEEECCCCcCCeECHhHcCCCccCCEEECCCC
Confidence                                                          6888999999999888999999999999999999


Q ss_pred             CCCCCCcccccCCCcCCEEeCCCCcCcccCc
Q 001313          940 NLAGPIPSTFSNLRNIESLDLSYNKLSWKIP  970 (1102)
Q Consensus       940 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  970 (1102)
                      +|++..|..|..+++|+.|+|++|.+++..+
T Consensus       140 ~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          140 QITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             CCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             cCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            9999999999999999999999999987655

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.73  E-value=3.6e-17  Score=171.30  Aligned_cols=157  Identities=22%  Similarity=0.292  Sum_probs=140.6

Q ss_pred             CCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccc
Q 001313          805 QLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQI  884 (1102)
Q Consensus       805 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  884 (1102)
                      +-+.++.+++.++ .+|..+.  ++|++|+|++|.+++..|..|.++.                                
T Consensus        20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~--------------------------------   64 (229)
T 3e6j_A           20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLI--------------------------------   64 (229)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCT--------------------------------
T ss_pred             eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCcc--------------------------------
Confidence            3567999999998 6776553  8999999999999998888877654                                


Q ss_pred             cceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCc
Q 001313          885 LESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNK  964 (1102)
Q Consensus       885 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  964 (1102)
                                           .|+.|+|++|++++..+..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|+
T Consensus        65 ---------------------~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~  123 (229)
T 3e6j_A           65 ---------------------NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK  123 (229)
T ss_dssp             ---------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ---------------------CCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCc
Confidence                                 68999999999987777788999999999999999999888899999999999999999


Q ss_pred             CcccCchhhhcCCCCCEEEcccCcCcccCCccccccCCCCccccCCCCCCCCCC
Q 001313          965 LSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPP 1018 (1102)
Q Consensus       965 l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~gN~~lC~~~ 1018 (1102)
                      |+ .+|..+..+++|++|++++|++++..+..+..+..+..+.+.+||+.|.++
T Consensus       124 l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          124 LT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             cc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            99 789999999999999999999998777667788888999999999999875

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.73  E-value=5.1e-20  Score=218.65  Aligned_cols=76  Identities=24%  Similarity=0.212  Sum_probs=43.8

Q ss_pred             CCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCC-cccccCCCcCCEEeCCCCcCcccCchh---hhcCCCCCE
Q 001313          906 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPI-PSTFSNLRNIESLDLSYNKLSWKIPYQ---LVELNTLAV  981 (1102)
Q Consensus       906 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~---l~~l~~L~~  981 (1102)
                      .|+.|+|++|++++ +| .|+.+++|++|+|++|+|++.+ |..|+.+++|+.|+|++|++++.+|..   +..+++|++
T Consensus       487 ~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~  564 (567)
T 1dce_A          487 CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS  564 (567)
T ss_dssp             TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred             CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence            34455555555554 44 5566666666666666666655 666666666666666666666544421   223556666


Q ss_pred             EE
Q 001313          982 FS  983 (1102)
Q Consensus       982 l~  983 (1102)
                      ||
T Consensus       565 L~  566 (567)
T 1dce_A          565 IL  566 (567)
T ss_dssp             EE
T ss_pred             cC
Confidence            54

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.72  E-value=5.8e-17  Score=176.46  Aligned_cols=152  Identities=25%  Similarity=0.343  Sum_probs=124.7

Q ss_pred             cccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCccccccccc
Q 001313          775 TFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLH  854 (1102)
Q Consensus       775 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~  854 (1102)
                      .+..+++|+.|++++|++++..+  +..+++|++|++++|++++ +| .+..+++|++|++++|++++. + .+..+   
T Consensus        63 ~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~-~-~l~~l---  133 (291)
T 1h6t_A           63 GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI-N-GLVHL---  133 (291)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC-G-GGGGC---
T ss_pred             hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC-h-hhcCC---
Confidence            46778888889999888887554  8888999999999998885 33 488889999999999988753 2 22222   


Q ss_pred             ccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEE
Q 001313          855 ERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTL  934 (1102)
Q Consensus       855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L  934 (1102)
                                                                        +.|+.|++++|++++.  +.+..+++|++|
T Consensus       134 --------------------------------------------------~~L~~L~l~~n~l~~~--~~l~~l~~L~~L  161 (291)
T 1h6t_A          134 --------------------------------------------------PQLESLYLGNNKITDI--TVLSRLTKLDTL  161 (291)
T ss_dssp             --------------------------------------------------TTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred             --------------------------------------------------CCCCEEEccCCcCCcc--hhhccCCCCCEE
Confidence                                                              2688899999999875  578899999999


Q ss_pred             ECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcc
Q 001313          935 NLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSG  991 (1102)
Q Consensus       935 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~  991 (1102)
                      +|++|++++..|  +..+++|+.|++++|++++ +| .+..+++|+.|++++|+++.
T Consensus       162 ~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          162 SLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             EccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence            999999997665  8999999999999999986 45 48899999999999999875

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=1.5e-17  Score=198.47  Aligned_cols=167  Identities=23%  Similarity=0.310  Sum_probs=90.1

Q ss_pred             CcEEEccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCC
Q 001313          638 LRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPK  717 (1102)
Q Consensus       638 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~  717 (1102)
                      +..+.+..+.+....+  +..+++|+.|++++|.+... + .+..+++|+.|+|++|++++..|  +..+++|+.|+|++
T Consensus        23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~   96 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE   96 (605)
T ss_dssp             HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred             HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence            3334444444443322  23455555555555555422 2 34555555555555555543322  44455555555555


Q ss_pred             CcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCC
Q 001313          718 NHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIP  797 (1102)
Q Consensus       718 n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p  797 (1102)
                      |.+++. | .+..+++|+.|+|++|.++                       + ++  .+..+++|+.|+|++|++++.  
T Consensus        97 N~l~~l-~-~l~~l~~L~~L~Ls~N~l~-----------------------~-l~--~l~~l~~L~~L~Ls~N~l~~l--  146 (605)
T 1m9s_A           97 NKIKDL-S-SLKDLKKLKSLSLEHNGIS-----------------------D-IN--GLVHLPQLESLYLGNNKITDI--  146 (605)
T ss_dssp             SCCCCC-T-TSTTCTTCCEEECTTSCCC-----------------------C-CG--GGGGCTTCSEEECCSSCCCCC--
T ss_pred             CCCCCC-h-hhccCCCCCEEEecCCCCC-----------------------C-Cc--cccCCCccCEEECCCCccCCc--
Confidence            544431 1 3444444444444444433                       2 22  456667777777777777654  


Q ss_pred             ccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCC
Q 001313          798 DRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHG  842 (1102)
Q Consensus       798 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  842 (1102)
                      ..+..+++|+.|+|++|++++..|  +..+++|+.|+|++|++++
T Consensus       147 ~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~  189 (605)
T 1m9s_A          147 TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD  189 (605)
T ss_dssp             GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence            456677777777777777775555  6667777777777776654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.71  E-value=2.4e-17  Score=167.41  Aligned_cols=89  Identities=27%  Similarity=0.376  Sum_probs=58.8

Q ss_pred             CCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcc
Q 001313          906 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA  985 (1102)
Q Consensus       906 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls  985 (1102)
                      .|+.|+|++|++++..|..|..+++|++|+|++|+|++..|..|.++++|+.|||++|+|++.+|..+..+++|++|+++
T Consensus        55 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  134 (192)
T 1w8a_A           55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA  134 (192)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred             CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence            35555555555555556666666666666666666666666666666667777777777766666666666667777777


Q ss_pred             cCcCcccCC
Q 001313          986 YNNLSGKIP  994 (1102)
Q Consensus       986 ~N~l~~~~p  994 (1102)
                      +|+++|.++
T Consensus       135 ~N~l~c~c~  143 (192)
T 1w8a_A          135 SNPFNCNCH  143 (192)
T ss_dssp             TCCBCCSGG
T ss_pred             CCCccCcCc
Confidence            777766655

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.70  E-value=5.3e-17  Score=164.83  Aligned_cols=176  Identities=22%  Similarity=0.305  Sum_probs=126.7

Q ss_pred             cEEEccCccCcccCCccccCCCCCCEEEccCccccccCch-hhcCCCCCCEEECcCccCCCCCCcccccccccccccCCC
Q 001313          783 MILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPI-QLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGS  861 (1102)
Q Consensus       783 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~  861 (1102)
                      +.+++++|.++ .+|..+..  +|++|++++|++++..+. .|..+++|++|+|++|++++..|..|.++.         
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~---------   78 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS---------   78 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT---------
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcc---------
Confidence            56777777775 45654433  788888888888866654 478888888888888888888787776654         


Q ss_pred             CCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCC
Q 001313          862 SLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNL  941 (1102)
Q Consensus       862 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l  941 (1102)
                                                                  .|+.|+|++|++++..|..|..+++|++|+|++|+|
T Consensus        79 --------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  114 (192)
T 1w8a_A           79 --------------------------------------------HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI  114 (192)
T ss_dssp             --------------------------------------------TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCC
T ss_pred             --------------------------------------------cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC
Confidence                                                        678889999999888888899999999999999999


Q ss_pred             CCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCCccccccCCCCccccCCCCCCCCCC
Q 001313          942 AGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPP 1018 (1102)
Q Consensus       942 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~gN~~lC~~~ 1018 (1102)
                      ++.+|..|..+++|+.|+|++|.+++..+.... ...++...+..+...+..|..   ++.....++..+.+.|..+
T Consensus       115 ~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~-~~~l~~~~~~~~~~~C~~P~~---l~~~~l~~l~~~~~~C~~~  187 (192)
T 1w8a_A          115 SCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF-AEWLRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             CEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH-HHHHHHHCCSGGGCBBCSSTT---TTTSBGGGSCTTTCCCCCC
T ss_pred             CeeCHHHhhcCCCCCEEEeCCCCccCcCcchHH-HHHHHHcCCCCCCCCCCCChH---HcCCChhhCcHhhcCcCCC
Confidence            999999999999999999999999987663211 011112233344455555542   2333334455566666544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.70  E-value=1.3e-16  Score=173.64  Aligned_cols=172  Identities=26%  Similarity=0.391  Sum_probs=115.6

Q ss_pred             CCCCCCCEEeCCCCCCCCcccchhhhhhcCCCCCcEEeCCCCcCCcchhHhhhcCCCcCEEEcCCCcccCCCChhhhccC
Q 001313           98 TPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSL  177 (1102)
Q Consensus        98 ~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l  177 (1102)
                      +.+++|++|++++|.+....      .+..+++|++|++++|.+++..+  ++++++|++|++++|.+.+   ...+..+
T Consensus        43 ~~l~~L~~L~l~~~~i~~~~------~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~---~~~l~~l  111 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSVQ------GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD---LSSLKDL  111 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCCT------TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC---GGGGTTC
T ss_pred             hhcCcccEEEccCCCcccCh------hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC---ChhhccC
Confidence            35667777777777765442      35667777777777777765333  7777777777777777764   2347777


Q ss_pred             CCCcEEEcCCCcCCcccccCCccccCCCCCcCEEEcCCCcCChhhhHhhhccCCCcEEEccCCcCCCCCchhhccCCCCC
Q 001313          178 RDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNL  257 (1102)
Q Consensus       178 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L  257 (1102)
                      ++|++|++++|.+.+.      ..+..+++|++|++++|.+++.  ..++.+++|++|++++|.+.+. +  .+..+++|
T Consensus       112 ~~L~~L~L~~n~i~~~------~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~-~--~l~~l~~L  180 (291)
T 1h6t_A          112 KKLKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-V--PLAGLTKL  180 (291)
T ss_dssp             TTCCEEECTTSCCCCC------GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC-G--GGTTCTTC
T ss_pred             CCCCEEECCCCcCCCC------hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccc-h--hhcCCCcc
Confidence            7777777777777664      3566777777777777777654  4677777777777777777632 3  26677777


Q ss_pred             cEEecccCccCCcchhhhhccccccceeccccccccCchhhhhhcCCCCCCCEEeCCCCCccc
Q 001313          258 EELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTE  320 (1102)
Q Consensus       258 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~  320 (1102)
                      ++|++++|.+++.                             ..+..+++|+.|++++|++..
T Consensus       181 ~~L~L~~N~i~~l-----------------------------~~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          181 QNLYLSKNHISDL-----------------------------RALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CEEECCSSCCCBC-----------------------------GGGTTCTTCSEEEEEEEEEEC
T ss_pred             CEEECCCCcCCCC-----------------------------hhhccCCCCCEEECcCCcccC
Confidence            7777777766532                             124566777777777776654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.70  E-value=8.9e-17  Score=191.84  Aligned_cols=148  Identities=20%  Similarity=0.260  Sum_probs=82.7

Q ss_pred             CCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccC
Q 001313          685 SLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSK  764 (1102)
Q Consensus       685 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~  764 (1102)
                      .+..+.+..+.+....+  +..+++|+.|++++|.+... + .+..+++|+.|+|++|.+++..| ...+++|+.|+|++
T Consensus        22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~   96 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDE   96 (605)
T ss_dssp             HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCS
T ss_pred             HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcC
Confidence            34445566666654333  45677788888888887643 3 47778888888888887775433 33445555555555


Q ss_pred             cccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCC
Q 001313          765 NMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHI  844 (1102)
Q Consensus       765 n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  844 (1102)
                      |.+.+ +|  .+..+++|+.|+|++|++++.  ..+..+++|+.|+|++|++++.  ..+..+++|+.|+|++|.+++..
T Consensus        97 N~l~~-l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~  169 (605)
T 1m9s_A           97 NKIKD-LS--SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV  169 (605)
T ss_dssp             SCCCC-CT--TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG
T ss_pred             CCCCC-Ch--hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch
Confidence            55543 22  344555555555555555432  2344455555555555555433  34445555555555555554433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.68  E-value=2.6e-19  Score=212.56  Aligned_cols=165  Identities=21%  Similarity=0.209  Sum_probs=130.5

Q ss_pred             cCCCcccccCCCcccEEE-ccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCcc
Q 001313          721 EGPIPLEFCQLRILQILD-ISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDR  799 (1102)
Q Consensus       721 ~~~~~~~~~~l~~L~~L~-ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~  799 (1102)
                      .+.+|..+..+++|+.|+ ++.|.+.          .|..+.+++|.+.+ +|.      ..|+.|++++|.+++ +|. 
T Consensus       398 ~~~~~~~l~~l~~L~~L~~l~~n~~~----------~L~~l~l~~n~i~~-l~~------~~L~~L~Ls~n~l~~-lp~-  458 (567)
T 1dce_A          398 LLYEKETLQYFSTLKAVDPMRAAYLD----------DLRSKFLLENSVLK-MEY------ADVRVLHLAHKDLTV-LCH-  458 (567)
T ss_dssp             GGGHHHHHHHHHHHHHHCGGGHHHHH----------HHHHHHHHHHHHHH-HHH------TTCSEEECTTSCCSS-CCC-
T ss_pred             ccCCHHHHHHHHhcccCcchhhcccc----------hhhhhhhhcccccc-cCc------cCceEEEecCCCCCC-CcC-
Confidence            345666677777777777 5666543          45556666666653 332      248899999999996 566 


Q ss_pred             ccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCC
Q 001313          800 VDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVD  879 (1102)
Q Consensus       800 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  879 (1102)
                      ++.+++|+.|+|++|+++ .+|..+..+++|+.|+|++|++++ +| .+++++                           
T Consensus       459 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~---------------------------  508 (567)
T 1dce_A          459 LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLP---------------------------  508 (567)
T ss_dssp             GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCS---------------------------
T ss_pred             ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCC---------------------------
Confidence            899999999999999999 789999999999999999999987 56 555443                           


Q ss_pred             ccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCC-cccccCCCcCCEEECCCCCCCCCCccc---ccCCCcC
Q 001313          880 PKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHI-PPQIGNLTKIQTLNLSHNNLAGPIPST---FSNLRNI  955 (1102)
Q Consensus       880 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~i-p~~~~~l~~L~~L~Ls~N~l~~~~p~~---~~~l~~L  955 (1102)
                                                .|+.|+|++|++++.+ |..|+.+++|+.|+|++|.+++.+|..   +..+++|
T Consensus       509 --------------------------~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L  562 (567)
T 1dce_A          509 --------------------------RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV  562 (567)
T ss_dssp             --------------------------SCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTC
T ss_pred             --------------------------CCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCccc
Confidence                                      6899999999999887 999999999999999999999876643   3347889


Q ss_pred             CEEeC
Q 001313          956 ESLDL  960 (1102)
Q Consensus       956 ~~L~L  960 (1102)
                      +.||+
T Consensus       563 ~~L~l  567 (567)
T 1dce_A          563 SSILT  567 (567)
T ss_dssp             SEEEC
T ss_pred             CccCC
Confidence            99875

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.68  E-value=1.1e-16  Score=163.61  Aligned_cols=155  Identities=15%  Similarity=0.224  Sum_probs=122.9

Q ss_pred             ccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccc
Q 001313          776 FFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE  855 (1102)
Q Consensus       776 ~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~  855 (1102)
                      ...+++|+.|++++|.++ .+| .+..+++|++|++++|.++  .+..+..+++|++|++++|++++..|..+..++   
T Consensus        40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~---  112 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLT---  112 (197)
T ss_dssp             HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCT---
T ss_pred             hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCC---
Confidence            356678888888888888 455 6788888999999888665  334788888999999999988876666665543   


Q ss_pred             cccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEE
Q 001313          856 RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLN  935 (1102)
Q Consensus       856 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~  935 (1102)
                                                                        .|+.|+|++|++++..|..++.+++|++|+
T Consensus       113 --------------------------------------------------~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~  142 (197)
T 4ezg_A          113 --------------------------------------------------SLTLLDISHSAHDDSILTKINTLPKVNSID  142 (197)
T ss_dssp             --------------------------------------------------TCCEEECCSSBCBGGGHHHHTTCSSCCEEE
T ss_pred             --------------------------------------------------CCCEEEecCCccCcHhHHHHhhCCCCCEEE
Confidence                                                              688899999999888888899999999999


Q ss_pred             CCCCC-CCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcc
Q 001313          936 LSHNN-LAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSG  991 (1102)
Q Consensus       936 Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~  991 (1102)
                      |++|. ++ .+| .+..+++|+.|++++|++++ ++ .+..+++|+.|++++|++.+
T Consensus       143 L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          143 LSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             ccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            99998 55 556 68889999999999999986 44 78888999999999998754

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.67  E-value=1.5e-16  Score=170.16  Aligned_cols=169  Identities=20%  Similarity=0.207  Sum_probs=138.5

Q ss_pred             ccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEE
Q 001313          755 VCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLD  834 (1102)
Q Consensus       755 ~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  834 (1102)
                      ..+..+++++|.+++ ++  .+..+++|+.|++++|.++. +| .+..+++|++|+|++|++++..+  +..+++|+.|+
T Consensus        19 ~~l~~l~l~~~~i~~-~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~   91 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTD-LV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHTCSCTTS-EE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred             HHHHHHHhcCCCccc-cc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence            344455555555543 33  46788899999999999985 45 68889999999999999996555  89999999999


Q ss_pred             CcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCC
Q 001313          835 LSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSC  914 (1102)
Q Consensus       835 Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~  914 (1102)
                      +++|++++..+...                                                        ..|+.|+|++
T Consensus        92 L~~N~l~~l~~~~~--------------------------------------------------------~~L~~L~L~~  115 (263)
T 1xeu_A           92 VNRNRLKNLNGIPS--------------------------------------------------------ACLSRLFLDN  115 (263)
T ss_dssp             CCSSCCSCCTTCCC--------------------------------------------------------SSCCEEECCS
T ss_pred             CCCCccCCcCcccc--------------------------------------------------------CcccEEEccC
Confidence            99999986322110                                                        2689999999


Q ss_pred             CCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCccc
Q 001313          915 NRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGK  992 (1102)
Q Consensus       915 N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~  992 (1102)
                      |++++. | .+..+++|+.|+|++|++++. | .++.+++|+.|+|++|++++.  ..+..+++|+.|++++|++++.
T Consensus       116 N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          116 NELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             SCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             CccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            999874 3 699999999999999999975 4 689999999999999999976  6788999999999999999876

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.65  E-value=3e-17  Score=201.35  Aligned_cols=159  Identities=23%  Similarity=0.271  Sum_probs=90.2

Q ss_pred             ccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccc
Q 001313          770 QLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFD  849 (1102)
Q Consensus       770 ~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  849 (1102)
                      .+|. .+.++++|++|+|++|.|+ .+|..|+++++|++|+|++|+|+ .+|..|..+++|++|+|++|.|+ .+|..|+
T Consensus       238 ~l~~-~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~  313 (727)
T 4b8c_D          238 NISA-NIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFG  313 (727)
T ss_dssp             CCCG-GGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTT
T ss_pred             CCCh-hhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhh
Confidence            4555 4447777888888888887 67777777888888888888887 66777888888888888888776 5566565


Q ss_pred             cccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCC
Q 001313          850 NTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLT  929 (1102)
Q Consensus       850 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~  929 (1102)
                      +++                                                     .|+.|+|++|.|++.+|..+..+.
T Consensus       314 ~l~-----------------------------------------------------~L~~L~L~~N~l~~~~p~~~~~~~  340 (727)
T 4b8c_D          314 NLC-----------------------------------------------------NLQFLGVEGNPLEKQFLKILTEKS  340 (727)
T ss_dssp             SCT-----------------------------------------------------TCCCEECTTSCCCSHHHHHHHHHH
T ss_pred             cCC-----------------------------------------------------CccEEeCCCCccCCCChHHHhhcc
Confidence            544                                                     577788888888877777765543


Q ss_pred             c-CCEEECCCCCCCCCCcccccCCCcCCEEeCCCC--------cCcccCchhhhcCCCCCEEEcccCcCcc
Q 001313          930 K-IQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYN--------KLSWKIPYQLVELNTLAVFSVAYNNLSG  991 (1102)
Q Consensus       930 ~-L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N--------~l~~~~p~~l~~l~~L~~l~ls~N~l~~  991 (1102)
                      . +..|+|++|.++|.+|..      |+.|++++|        .|.+..+..+.++..+....+++|-+.+
T Consensus       341 ~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~  405 (727)
T 4b8c_D          341 VTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQ  405 (727)
T ss_dssp             HHHHHHHHHHCCCCCCCCCC-----------------------------------------------CCCG
T ss_pred             hhhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeecccccc
Confidence            2 234677888888777764      345556666        4444444555566666777777777754

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.65  E-value=4.4e-16  Score=159.00  Aligned_cols=134  Identities=19%  Similarity=0.251  Sum_probs=91.0

Q ss_pred             ccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccc
Q 001313          776 FFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE  855 (1102)
Q Consensus       776 ~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~  855 (1102)
                      +..+++|++|++++|.++  .+..+..+++|++|++++|++++..|..+..+++|++|++++|.+++..|..+..++   
T Consensus        62 l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~---  136 (197)
T 4ezg_A           62 IEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP---  136 (197)
T ss_dssp             GGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCS---
T ss_pred             HhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCC---
Confidence            555666777777766554  234566677777777777777766666677777777777777777665555544333   


Q ss_pred             cccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEE
Q 001313          856 RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLN  935 (1102)
Q Consensus       856 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~  935 (1102)
                                                                        .|+.|++++|++.+.+| .+..+++|+.|+
T Consensus       137 --------------------------------------------------~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~  165 (197)
T 4ezg_A          137 --------------------------------------------------KVNSIDLSYNGAITDIM-PLKTLPELKSLN  165 (197)
T ss_dssp             --------------------------------------------------SCCEEECCSCTBCCCCG-GGGGCSSCCEEE
T ss_pred             --------------------------------------------------CCCEEEccCCCCccccH-hhcCCCCCCEEE
Confidence                                                              56777777777334555 578888899999


Q ss_pred             CCCCCCCCCCcccccCCCcCCEEeCCCCcCcc
Q 001313          936 LSHNNLAGPIPSTFSNLRNIESLDLSYNKLSW  967 (1102)
Q Consensus       936 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  967 (1102)
                      +++|.+++. + .+..+++|+.|++++|++.+
T Consensus       166 l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          166 IQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred             CCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence            999988863 3 68888889999999998764

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.64  E-value=3.9e-17  Score=200.39  Aligned_cols=226  Identities=21%  Similarity=0.197  Sum_probs=112.0

Q ss_pred             CccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEc
Q 001313          660 TNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDI  739 (1102)
Q Consensus       660 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  739 (1102)
                      +.++.|+|.+|.+... +..     .++.++|+.|.+.+              +++..|.+. ..+..+..++.|+.|+|
T Consensus       173 ~~~~~l~L~~n~~~~~-~~~-----~l~~l~Ls~~~i~~--------------~~~~~n~~~-~~~~~~~~l~~L~~L~L  231 (727)
T 4b8c_D          173 PLTPKIELFANGKDEA-NQA-----LLQHKKLSQYSIDE--------------DDDIENRMV-MPKDSKYDDQLWHALDL  231 (727)
T ss_dssp             ----------------------------------------------------------------------CCCCCCEEEC
T ss_pred             CccceEEeeCCCCCcc-hhh-----HhhcCccCcccccC--------------cccccccee-cChhhhccCCCCcEEEC
Confidence            5567777777776642 222     23444444444332              122223332 33444555555555555


Q ss_pred             cCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCcccccc
Q 001313          740 SDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGE  819 (1102)
Q Consensus       740 s~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  819 (1102)
                      ++|.+....+..+.+++|+.|+|++|.++ .+|. .|.++++|++|+|++|+|+ .+|..|+.+++|++|+|++|.++ .
T Consensus       232 s~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~  307 (727)
T 4b8c_D          232 SNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPA-EIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-T  307 (727)
T ss_dssp             TTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCG-GGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-C
T ss_pred             CCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccCh-hhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-c
Confidence            55555532223334555666666666665 6776 8899999999999999999 77999999999999999999998 7


Q ss_pred             CchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeec
Q 001313          820 VPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTY  899 (1102)
Q Consensus       820 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  899 (1102)
                      +|..|..+++|++|+|++|++++.+|..+.....                                              
T Consensus       308 lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~----------------------------------------------  341 (727)
T 4b8c_D          308 LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSV----------------------------------------------  341 (727)
T ss_dssp             CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHH----------------------------------------------
T ss_pred             cChhhhcCCCccEEeCCCCccCCCChHHHhhcch----------------------------------------------
Confidence            8888999999999999999999999988765431                                              


Q ss_pred             cCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCC--------CCCCCCcccccCCCcCCEEeCCCCcCccc
Q 001313          900 QGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHN--------NLAGPIPSTFSNLRNIESLDLSYNKLSWK  968 (1102)
Q Consensus       900 ~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N--------~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  968 (1102)
                            ....++|++|.++|.+|..      |+.|++++|        .+.+.++..+.++..++...+++|.+.+.
T Consensus       342 ------~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~  406 (727)
T 4b8c_D          342 ------TGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQH  406 (727)
T ss_dssp             ------HHHHHHHHHCCCCCCCCCC-----------------------------------------------CCCGG
T ss_pred             ------hhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeeccccccc
Confidence                  1224789999999999974      456677777        56666677777888888899999998743

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.64  E-value=1e-16  Score=178.43  Aligned_cols=217  Identities=14%  Similarity=0.121  Sum_probs=109.5

Q ss_pred             CCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccCcc----CcccCCCCcCCCCC
Q 001313          610 MNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNH----FVGEIPQSLSKCSS  685 (1102)
Q Consensus       610 l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~~~~~~l~~  685 (1102)
                      +++|+.+++.+ +++ .|+...|.+|++|+.+++++|.+..+.+.+|.++.++..+.+..+.    .......+|.++..
T Consensus       100 ~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~  177 (329)
T 3sb4_A          100 KQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP  177 (329)
T ss_dssp             CTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred             cCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence            55555555555 454 4555555555555555555555555555555555555555444421    12222334555555


Q ss_pred             Cc-EEEccCCcCCCCCCccc----cCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCC-CCccccE
Q 001313          686 LQ-GLFLSNNSLSGKIPRWL----GNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCY-DFVCIEQ  759 (1102)
Q Consensus       686 L~-~L~l~~n~l~~~~p~~~----~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~-~~~~L~~  759 (1102)
                      |+ .+.+....   .++..+    ....++..+.+.++-...........+++|+.+++++|+++...+..+ ++.+|++
T Consensus       178 L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~  254 (329)
T 3sb4_A          178 LETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK  254 (329)
T ss_dssp             CEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE
T ss_pred             cceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCE
Confidence            55 33332211   111100    012223333333221100000000123444444444444442222222 2334444


Q ss_pred             EEccCcccccccCcccccCccCcc-EEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEE
Q 001313          760 VHLSKNMLHGQLKEGTFFNCLTLM-ILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLD  834 (1102)
Q Consensus       760 L~l~~n~l~~~i~~~~~~~~~~L~-~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  834 (1102)
                      +++.+| +. .|+..+|.+|++|+ .+++.+ .++.+.+.+|.++++|+.+++++|+++...+.+|.++++|+.++
T Consensus       255 l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          255 IKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            444443 22 46666788888887 888877 67766677888888888888888888766777788888887775

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.63  E-value=4.5e-16  Score=166.54  Aligned_cols=170  Identities=21%  Similarity=0.282  Sum_probs=106.7

Q ss_pred             ccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEcc
Q 001313          661 NLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDIS  740 (1102)
Q Consensus       661 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls  740 (1102)
                      +++.+++++|.+++..  .+..+++|++|++++|.++ .+| .+..+++|+.|++++|++++..+  +..+++|+.|+++
T Consensus        20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~   93 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred             HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence            3444444444444222  3444455555555555554 233 34455555555555555554333  5555555555555


Q ss_pred             CcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccC
Q 001313          741 DNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEV  820 (1102)
Q Consensus       741 ~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~  820 (1102)
                      +|++++ +|.... ++|+.|++++|++++ ++  .+..+++|+.|++++|++++. + .+..+++|+.|++++|++++. 
T Consensus        94 ~N~l~~-l~~~~~-~~L~~L~L~~N~l~~-~~--~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-  165 (263)
T 1xeu_A           94 RNRLKN-LNGIPS-ACLSRLFLDNNELRD-TD--SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-  165 (263)
T ss_dssp             SSCCSC-CTTCCC-SSCCEEECCSSCCSB-SG--GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-
T ss_pred             CCccCC-cCcccc-CcccEEEccCCccCC-Ch--hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-
Confidence            555554 222222 556666666666654 33  578888999999999999865 3 688889999999999999866 


Q ss_pred             chhhcCCCCCCEEECcCccCCCCCC
Q 001313          821 PIQLCRLNQLQLLDLSNNNLHGHIP  845 (1102)
Q Consensus       821 p~~~~~l~~L~~L~Ls~N~l~~~~p  845 (1102)
                       ..+..+++|+.|++++|++++...
T Consensus       166 -~~l~~l~~L~~L~l~~N~~~~~~~  189 (263)
T 1xeu_A          166 -GGLTRLKKVNWIDLTGQKCVNEPV  189 (263)
T ss_dssp             -TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred             -HHhccCCCCCEEeCCCCcccCCcc
Confidence             678889999999999999886643

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.61  E-value=6.7e-16  Score=171.79  Aligned_cols=76  Identities=14%  Similarity=0.031  Sum_probs=52.3

Q ss_pred             CCceEECCCCCCCCCCcccccCCCcCC-EEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEE
Q 001313          906 LLSGLDLSCNRLIGHIPPQIGNLTKIQ-TLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFS  983 (1102)
Q Consensus       906 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~  983 (1102)
                      .|+.|+|++| ++..-+.+|.++++|+ .+++++ .++.+.+.+|.++++|+.+++++|+++...+..|.++++|+.+.
T Consensus       251 ~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          251 YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            4556666665 5444455677777777 777776 66666667777777777777777777766666777777777664

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.60  E-value=2.2e-14  Score=162.62  Aligned_cols=264  Identities=12%  Similarity=0.073  Sum_probs=162.2

Q ss_pred             CCCcEEEccCCCCcCCCcCCCCCCCCcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEE
Q 001313          538 TKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLD  617 (1102)
Q Consensus       538 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  617 (1102)
                      ..++.+.+.+ .++......|..+ +|+.+++..+ ++ .|+...|.. .+|+.+.+.. .+..+.+.+|.+|++|+.++
T Consensus       113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~  186 (401)
T 4fdw_A          113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKAD  186 (401)
T ss_dssp             SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred             CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeee
Confidence            4455555443 2333334445443 5677776655 43 555555554 4677777775 56656667777777777777


Q ss_pred             ccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCC
Q 001313          618 LSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLS  697 (1102)
Q Consensus       618 Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  697 (1102)
                      +++|+++ .++...|. +.+|+.+.+..+ ++.+...+|.++++|+.+++.++ ++.+...+|.+ .+|+.+.+. +.++
T Consensus       187 l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~  260 (401)
T 4fdw_A          187 LSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVT  260 (401)
T ss_dssp             CTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCC
T ss_pred             cCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCcc
Confidence            7777777 77777764 577777777633 66666667777777777777654 44444555655 567777663 3344


Q ss_pred             CCCCccccCCCCccEEECCCCccc-----CCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccC
Q 001313          698 GKIPRWLGNLTVLRHIIMPKNHIE-----GPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLK  772 (1102)
Q Consensus       698 ~~~p~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~  772 (1102)
                      ..-+.+|.++++|+.+++.+|.+.     .+.+.+|.+|++|+.+++.++ ++                        .|+
T Consensus       261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~------------------------~I~  315 (401)
T 4fdw_A          261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IR------------------------ILG  315 (401)
T ss_dssp             EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CC------------------------EEC
T ss_pred             EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eE------------------------EEh
Confidence            444556666666666666655543     233445555666665555522 22                        455


Q ss_pred             cccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCC-CCCEEECcCccC
Q 001313          773 EGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLN-QLQLLDLSNNNL  840 (1102)
Q Consensus       773 ~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l  840 (1102)
                      ..+|.+|++|+.+++..| ++.+.+.+|.++ +|+.+++++|.+....+..|..++ .++.|.+..+.+
T Consensus       316 ~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          316 QGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             TTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             hhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            557777777777777544 555566677777 777777777777655566666663 566776665543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.60  E-value=5e-15  Score=150.06  Aligned_cols=89  Identities=29%  Similarity=0.307  Sum_probs=70.7

Q ss_pred             CCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcc
Q 001313          906 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA  985 (1102)
Q Consensus       906 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls  985 (1102)
                      .|+.|+|++|++++..|..|.++++|++|+|++|+|++..|..|.++++|+.|+|++|+|++..+..|..+++|+.|+++
T Consensus        55 ~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  134 (193)
T 2wfh_A           55 HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG  134 (193)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeC
Confidence            45556666666666666677788888888888888888888888888888888888888887666678888888899999


Q ss_pred             cCcCcccCC
Q 001313          986 YNNLSGKIP  994 (1102)
Q Consensus       986 ~N~l~~~~p  994 (1102)
                      +|++.|.+.
T Consensus       135 ~N~~~C~c~  143 (193)
T 2wfh_A          135 ANPLYCDCN  143 (193)
T ss_dssp             SSCEECSGG
T ss_pred             CCCeecCCc
Confidence            998887654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.58  E-value=2.7e-15  Score=148.91  Aligned_cols=85  Identities=25%  Similarity=0.212  Sum_probs=53.1

Q ss_pred             CCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCC-cccccCCCcCCEEeCCCCcCcccCc---hhhhcCCCCCE
Q 001313          906 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPI-PSTFSNLRNIESLDLSYNKLSWKIP---YQLVELNTLAV  981 (1102)
Q Consensus       906 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~  981 (1102)
                      .|+.|+|++|++++.+|..+..+++|++|+|++|.+++.. +..+..+++|+.|++++|++++..+   ..+..+++|++
T Consensus        72 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~  151 (168)
T 2ell_A           72 KLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTY  151 (168)
T ss_dssp             SCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCE
T ss_pred             CCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcE
Confidence            3555555555555555555555666666666666666532 2566666777777777777765444   35666677777


Q ss_pred             EEcccCcCc
Q 001313          982 FSVAYNNLS  990 (1102)
Q Consensus       982 l~ls~N~l~  990 (1102)
                      |++++|.+.
T Consensus       152 L~l~~n~~~  160 (168)
T 2ell_A          152 LDGYDREDQ  160 (168)
T ss_dssp             ETTEETTSC
T ss_pred             ecCCCCChh
Confidence            777776664

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.58  E-value=4.5e-15  Score=147.28  Aligned_cols=138  Identities=23%  Similarity=0.238  Sum_probs=120.5

Q ss_pred             ccCccEEEccCccCc-ccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccc
Q 001313          779 CLTLMILDLSYNHLN-GNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERY  857 (1102)
Q Consensus       779 ~~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~  857 (1102)
                      .++|+.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|++++.+|..+..++     
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----   95 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLP-----   95 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT-----
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCC-----
Confidence            478999999999998 78898899999999999999999966  7889999999999999999987777665443     


Q ss_pred             cCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCC-cccccCCCcCCEEEC
Q 001313          858 NNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHI-PPQIGNLTKIQTLNL  936 (1102)
Q Consensus       858 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~i-p~~~~~l~~L~~L~L  936 (1102)
                                                                      .|+.|+|++|++++.. +..+..+++|++|++
T Consensus        96 ------------------------------------------------~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l  127 (168)
T 2ell_A           96 ------------------------------------------------NLTHLNLSGNKLKDISTLEPLKKLECLKSLDL  127 (168)
T ss_dssp             ------------------------------------------------TCCEEECBSSSCCSSGGGGGGSSCSCCCEEEC
T ss_pred             ------------------------------------------------CCCEEeccCCccCcchhHHHHhcCCCCCEEEe
Confidence                                                            6899999999998743 378999999999999


Q ss_pred             CCCCCCCCCc---ccccCCCcCCEEeCCCCcCcccCchh
Q 001313          937 SHNNLAGPIP---STFSNLRNIESLDLSYNKLSWKIPYQ  972 (1102)
Q Consensus       937 s~N~l~~~~p---~~~~~l~~L~~L~Ls~N~l~~~~p~~  972 (1102)
                      ++|.+++..+   ..|..+++|+.||+++|.+. .+|.+
T Consensus       128 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~  165 (168)
T 2ell_A          128 FNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS  165 (168)
T ss_dssp             CSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred             eCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence            9999997766   58999999999999999998 45543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.58  E-value=1.2e-14  Score=145.65  Aligned_cols=90  Identities=24%  Similarity=0.239  Sum_probs=65.8

Q ss_pred             CCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcc
Q 001313          906 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA  985 (1102)
Q Consensus       906 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls  985 (1102)
                      .|+.|+|++|++++..+..|+.+++|++|+|++|++++..+..|..+++|+.|++++|++++..+..+..+++|++|+++
T Consensus        53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  132 (177)
T 2o6r_A           53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH  132 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence            45566666666665555556777778888888888887777777778888888888888876655556777888888888


Q ss_pred             cCcCcccCCc
Q 001313          986 YNNLSGKIPE  995 (1102)
Q Consensus       986 ~N~l~~~~p~  995 (1102)
                      +|++.|.+|.
T Consensus       133 ~N~~~~~~~~  142 (177)
T 2o6r_A          133 TNPWDCSCPR  142 (177)
T ss_dssp             SSCBCCCHHH
T ss_pred             CCCeeccCcc
Confidence            8888877664

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.57  E-value=3.5e-15  Score=144.72  Aligned_cols=80  Identities=25%  Similarity=0.236  Sum_probs=58.8

Q ss_pred             CCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCC-CcccccCCCcCCEEeCCCCcCcccCc---hhhhcCCCCCE
Q 001313          906 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGP-IPSTFSNLRNIESLDLSYNKLSWKIP---YQLVELNTLAV  981 (1102)
Q Consensus       906 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~  981 (1102)
                      .|+.|+|++|.+++.+|..+..+++|++|++++|.+++. .|..++.+++|+.|++++|++++..+   ..+..+++|++
T Consensus        65 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~  144 (149)
T 2je0_A           65 KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTY  144 (149)
T ss_dssp             TCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCE
T ss_pred             CCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccc
Confidence            456666666666666677677777888888888888763 34777888888888888888886655   46777888888


Q ss_pred             EEcc
Q 001313          982 FSVA  985 (1102)
Q Consensus       982 l~ls  985 (1102)
                      ||++
T Consensus       145 L~l~  148 (149)
T 2je0_A          145 LDGY  148 (149)
T ss_dssp             ETTB
T ss_pred             ccCC
Confidence            8775

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.57  E-value=5.9e-14  Score=159.06  Aligned_cols=82  Identities=13%  Similarity=0.131  Sum_probs=42.6

Q ss_pred             CCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCee
Q 001313          586 LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWL  665 (1102)
Q Consensus       586 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  665 (1102)
                      +..++.+.+.+ .++.+...+|.++ +|+.+.+..+ ++ .|+...|.++ +|+.+.+.. .++.+...+|.++++|+.+
T Consensus       112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l  185 (401)
T 4fdw_A          112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA  185 (401)
T ss_dssp             CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred             cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence            45666666654 3444555666664 5777776655 44 5665555443 455555543 3443334444444444444


Q ss_pred             eccCccCc
Q 001313          666 QLEGNHFV  673 (1102)
Q Consensus       666 ~L~~n~l~  673 (1102)
                      ++.+|.++
T Consensus       186 ~l~~n~l~  193 (401)
T 4fdw_A          186 DLSKTKIT  193 (401)
T ss_dssp             ECTTSCCS
T ss_pred             ecCCCcce
Confidence            44444443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.57  E-value=1.7e-14  Score=146.02  Aligned_cols=129  Identities=28%  Similarity=0.375  Sum_probs=111.1

Q ss_pred             cEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCC
Q 001313          783 MILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSS  862 (1102)
Q Consensus       783 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~  862 (1102)
                      +.+++++|.++ .+|..+.  ++|++|+|++|+++ .+|..|..+++|+.|+|++|++++..|..|.++.          
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~----------   78 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMT----------   78 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCT----------
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCC----------
Confidence            56788888887 4565443  57889999999998 6778899999999999999999988777776655          


Q ss_pred             CCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCC
Q 001313          863 LQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLA  942 (1102)
Q Consensus       863 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~  942 (1102)
                                                                 .|+.|+|++|++++..|..|..+++|++|+|++|.|+
T Consensus        79 -------------------------------------------~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~  115 (193)
T 2wfh_A           79 -------------------------------------------QLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS  115 (193)
T ss_dssp             -------------------------------------------TCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             -------------------------------------------CCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCC
Confidence                                                       6889999999999888889999999999999999999


Q ss_pred             CCCcccccCCCcCCEEeCCCCcCccc
Q 001313          943 GPIPSTFSNLRNIESLDLSYNKLSWK  968 (1102)
Q Consensus       943 ~~~p~~~~~l~~L~~L~Ls~N~l~~~  968 (1102)
                      +..+..|..+++|+.|+|++|.+.+.
T Consensus       116 ~~~~~~~~~l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A          116 VVPEGAFNDLSALSHLAIGANPLYCD  141 (193)
T ss_dssp             BCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             eeChhhhhcCccccEEEeCCCCeecC
Confidence            88888899999999999999999853

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.56  E-value=4.3e-15  Score=144.08  Aligned_cols=129  Identities=22%  Similarity=0.282  Sum_probs=100.6

Q ss_pred             ccCccEEEccCccCc-ccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccc
Q 001313          779 CLTLMILDLSYNHLN-GNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERY  857 (1102)
Q Consensus       779 ~~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~  857 (1102)
                      .++|+.|++++|.++ +.+|..+..+++|++|++++|++++.  ..+..+++|++|++++|.+++.+|..+..++     
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-----   88 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP-----   88 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT-----
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCC-----
Confidence            356778888888877 67777777788888888888888755  6677788888888888888776666554433     


Q ss_pred             cCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCC-CcccccCCCcCCEEEC
Q 001313          858 NNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGH-IPPQIGNLTKIQTLNL  936 (1102)
Q Consensus       858 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~-ip~~~~~l~~L~~L~L  936 (1102)
                                                                      .|+.|++++|++++. .|..++.+++|++|++
T Consensus        89 ------------------------------------------------~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l  120 (149)
T 2je0_A           89 ------------------------------------------------NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL  120 (149)
T ss_dssp             ------------------------------------------------TCCEEECTTSCCCSHHHHGGGGGCTTCCEEEC
T ss_pred             ------------------------------------------------CCCEEECCCCcCCChHHHHHHhhCCCCCEEeC
Confidence                                                            577888888888763 4477888999999999


Q ss_pred             CCCCCCCCCc---ccccCCCcCCEEeCCC
Q 001313          937 SHNNLAGPIP---STFSNLRNIESLDLSY  962 (1102)
Q Consensus       937 s~N~l~~~~p---~~~~~l~~L~~L~Ls~  962 (1102)
                      ++|.+++..+   ..++.+++|+.||+++
T Consensus       121 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          121 FNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             TTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             cCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            9999998776   6788899999999874

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.55  E-value=3.2e-14  Score=142.44  Aligned_cols=133  Identities=25%  Similarity=0.262  Sum_probs=105.1

Q ss_pred             ccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCC
Q 001313          782 LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGS  861 (1102)
Q Consensus       782 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~  861 (1102)
                      .+.+++++|+++. +|..+  .++|+.|++++|++++..+..|..+++|++|++++|++++..+..|.++.         
T Consensus         9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~---------   76 (177)
T 2o6r_A            9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT---------   76 (177)
T ss_dssp             TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT---------
T ss_pred             CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCC---------
Confidence            3566777777763 44333  25788888888888866666778888888888888888766665555443         


Q ss_pred             CCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCC
Q 001313          862 SLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNL  941 (1102)
Q Consensus       862 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l  941 (1102)
                                                                  .|+.|+|++|++++..+..|..+++|++|+|++|++
T Consensus        77 --------------------------------------------~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  112 (177)
T 2o6r_A           77 --------------------------------------------KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQL  112 (177)
T ss_dssp             --------------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             --------------------------------------------ccCEEECCCCCccccCHHHhhCCcccCEEECcCCcc
Confidence                                                        678888999999887777789999999999999999


Q ss_pred             CCCCcccccCCCcCCEEeCCCCcCcccCc
Q 001313          942 AGPIPSTFSNLRNIESLDLSYNKLSWKIP  970 (1102)
Q Consensus       942 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  970 (1102)
                      ++..+..|..+++|+.|+|++|.+.+..|
T Consensus       113 ~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          113 KSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             eEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            98888788999999999999999998765

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.55  E-value=1.1e-13  Score=157.96  Aligned_cols=245  Identities=15%  Similarity=0.136  Sum_probs=124.2

Q ss_pred             CCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCccccccc
Q 001313          578 IPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNF  657 (1102)
Q Consensus       578 ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  657 (1102)
                      |....|..+.+|+.+.+.. .++.+-..+|.+|++|+.+++.++ ++ .|+...|.++.+|+.+.+..+ +..+...+|.
T Consensus        62 Ig~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~  137 (394)
T 4fs7_A           62 IGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAFK  137 (394)
T ss_dssp             ECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred             hHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceeee
Confidence            3333344455555555543 244444455555555665555433 33 455555555555555544432 3333334444


Q ss_pred             CCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEE
Q 001313          658 NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQIL  737 (1102)
Q Consensus       658 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  737 (1102)
                      ++..++......  .......+|.+|++|+.+.+.++.. ......|.++++|+.+.+..+ ++.+...+|.++..|+.+
T Consensus       138 ~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i  213 (394)
T 4fs7_A          138 GCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSME-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENM  213 (394)
T ss_dssp             TCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTCC-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBC
T ss_pred             cccccccccCcc--ccccchhhhcccCCCcEEecCCccc-eeccccccCCCCceEEEcCCC-ceEeCchhhcccccccee
Confidence            443322222211  1122334566666677766654432 244455666666766666554 333444566666666666


Q ss_pred             EccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCcccc
Q 001313          738 DISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLE  817 (1102)
Q Consensus       738 ~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~  817 (1102)
                      .+..+... .-...+....|+.+.+....-  .+...+|.++..++.+.+..+... .....|..+..++.+....+.+ 
T Consensus       214 ~~~~~~~~-i~~~~~~~~~l~~i~ip~~~~--~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i-  288 (394)
T 4fs7_A          214 EFPNSLYY-LGDFALSKTGVKNIIIPDSFT--ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV-  288 (394)
T ss_dssp             CCCTTCCE-ECTTTTTTCCCCEEEECTTCC--EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE-
T ss_pred             ecCCCceE-eehhhcccCCCceEEECCCce--ecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee-
Confidence            66554322 111223344555555543321  344456667777777777655432 4455666666666666655432 


Q ss_pred             ccCchhhcCCCCCCEEECcC
Q 001313          818 GEVPIQLCRLNQLQLLDLSN  837 (1102)
Q Consensus       818 ~~~p~~~~~l~~L~~L~Ls~  837 (1102)
                        ....|..+.+|+.+.+.+
T Consensus       289 --~~~~F~~~~~L~~i~l~~  306 (394)
T 4fs7_A          289 --PEKTFYGCSSLTEVKLLD  306 (394)
T ss_dssp             --CTTTTTTCTTCCEEEECT
T ss_pred             --cccccccccccccccccc
Confidence              223455666666666544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.51  E-value=3.4e-13  Score=153.92  Aligned_cols=330  Identities=14%  Similarity=0.136  Sum_probs=163.3

Q ss_pred             hhhhhcCCCCcEEEccCCCCcCCCcCCCCCCCCcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCC
Q 001313          531 NWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNM  610 (1102)
Q Consensus       531 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  610 (1102)
                      ...|.++++|+++.+.+ .++......|..+.+|+.+++..+ ++ .|+...+..+++|+.+.+..+ +..+...+|.++
T Consensus        64 ~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~  139 (394)
T 4fs7_A           64 YAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGC  139 (394)
T ss_dssp             TTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTC
T ss_pred             HHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceeeecc
Confidence            33355566666666653 244444555556666666666543 32 444455544555655555433 333444455555


Q ss_pred             CCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEE
Q 001313          611 NFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLF  690 (1102)
Q Consensus       611 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  690 (1102)
                      ..+........  . .+....|.+|.+|+.+.+.++ +..+....|.++++|+.+.+..+ ++.....+|.++..|+.+.
T Consensus       140 ~~~~~~~~~~~--~-~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~  214 (394)
T 4fs7_A          140 DFKEITIPEGV--T-VIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENME  214 (394)
T ss_dssp             CCSEEECCTTC--C-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCC
T ss_pred             cccccccCccc--c-ccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceee
Confidence            43333222221  1 344445555666666666433 23344445555666666665544 3333444555566665555


Q ss_pred             ccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccc
Q 001313          691 LSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQ  770 (1102)
Q Consensus       691 l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~  770 (1102)
                      +..+...  +.........|+.+.+... ++......|..+..++.+.+..+..                         .
T Consensus       215 ~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~-------------------------~  266 (394)
T 4fs7_A          215 FPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL-------------------------R  266 (394)
T ss_dssp             CCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC-------------------------E
T ss_pred             cCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcc-------------------------e
Confidence            5444322  1222223344555555332 2222233445555555555544322                         2


Q ss_pred             cCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCccccc
Q 001313          771 LKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN  850 (1102)
Q Consensus       771 i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  850 (1102)
                      ++...|.++..++.+....+.+   ....|.++.+|+.+.+.++ ++.....+|.++++|+.+++.++ ++..-..+|.+
T Consensus       267 i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~  341 (394)
T 4fs7_A          267 IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRG  341 (394)
T ss_dssp             ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTT
T ss_pred             eeccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccC
Confidence            3333555555555555544332   2234555556666655443 44344455666666666666433 33333334443


Q ss_pred             ccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCc
Q 001313          851 TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTK  930 (1102)
Q Consensus       851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~  930 (1102)
                      ++                                                     .|+.+++..| ++..-..+|.++++
T Consensus       342 c~-----------------------------------------------------~L~~i~lp~~-l~~I~~~aF~~C~~  367 (394)
T 4fs7_A          342 CT-----------------------------------------------------SLSNINFPLS-LRKIGANAFQGCIN  367 (394)
T ss_dssp             CT-----------------------------------------------------TCCEECCCTT-CCEECTTTBTTCTT
T ss_pred             CC-----------------------------------------------------CCCEEEECcc-ccEehHHHhhCCCC
Confidence            32                                                     3555555544 44334456777778


Q ss_pred             CCEEECCCCCCCCCCcccccCCCcCCEE
Q 001313          931 IQTLNLSHNNLAGPIPSTFSNLRNIESL  958 (1102)
Q Consensus       931 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  958 (1102)
                      |+.+++..+ ++ .+..+|.+.++|+.+
T Consensus       368 L~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          368 LKKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             CCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             CCEEEECCC-CE-EhhheecCCCCCcEE
Confidence            888877655 33 345667777777654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.47  E-value=7.1e-16  Score=157.58  Aligned_cols=155  Identities=22%  Similarity=0.275  Sum_probs=114.9

Q ss_pred             ccCccCccEEEccCccCcccCCc------cccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccc
Q 001313          776 FFNCLTLMILDLSYNHLNGNIPD------RVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFD  849 (1102)
Q Consensus       776 ~~~~~~L~~L~Ls~n~l~~~~p~------~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  849 (1102)
                      +.....++.++++.+.+++..|.      .+..+++|++|++++|++++ +| .+..+++|++|++++|.++ .+|..+.
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~   90 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA   90 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence            44455677777777777777776      78888888888888888886 66 7888888888888888887 4454333


Q ss_pred             cccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCC
Q 001313          850 NTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLT  929 (1102)
Q Consensus       850 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~  929 (1102)
                      .++                                                     .|+.|+|++|++++ +| .+..++
T Consensus        91 ~~~-----------------------------------------------------~L~~L~L~~N~l~~-l~-~~~~l~  115 (198)
T 1ds9_A           91 VAD-----------------------------------------------------TLEELWISYNQIAS-LS-GIEKLV  115 (198)
T ss_dssp             HHH-----------------------------------------------------HCSEEEEEEEECCC-HH-HHHHHH
T ss_pred             cCC-----------------------------------------------------cCCEEECcCCcCCc-CC-ccccCC
Confidence            222                                                     57788888888876 45 577888


Q ss_pred             cCCEEECCCCCCCCCCc-ccccCCCcCCEEeCCCCcCcccCchh----------hhcCCCCCEEEcccCcCc
Q 001313          930 KIQTLNLSHNNLAGPIP-STFSNLRNIESLDLSYNKLSWKIPYQ----------LVELNTLAVFSVAYNNLS  990 (1102)
Q Consensus       930 ~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~l~ls~N~l~  990 (1102)
                      +|++|+|++|++++..+ ..+..+++|+.|++++|++++.+|..          +..+++|++||  .|+++
T Consensus       116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            88888888888885433 46788888888888888888776653          67788888776  55554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.45  E-value=2.2e-13  Score=134.76  Aligned_cols=90  Identities=21%  Similarity=0.198  Sum_probs=85.2

Q ss_pred             CCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcc
Q 001313          906 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA  985 (1102)
Q Consensus       906 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls  985 (1102)
                      .++.|+|++|++++..|..|..+++|++|+|++|+|++..|..|.++++|+.|+|++|+|++..|..|..+++|++|+++
T Consensus        31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  110 (170)
T 3g39_A           31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL  110 (170)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence            68899999999999999999999999999999999999988899999999999999999998878789999999999999


Q ss_pred             cCcCcccCCc
Q 001313          986 YNNLSGKIPE  995 (1102)
Q Consensus       986 ~N~l~~~~p~  995 (1102)
                      +|++.+.++.
T Consensus       111 ~N~~~c~c~~  120 (170)
T 3g39_A          111 NNPWDCACSD  120 (170)
T ss_dssp             SSCBCTTBGG
T ss_pred             CCCCCCCchh
Confidence            9999998775

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.44  E-value=1e-13  Score=138.53  Aligned_cols=84  Identities=17%  Similarity=0.177  Sum_probs=57.4

Q ss_pred             CCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcc--cccCCCcCCEEeCCCCcCcccCchh----hhcCCCC
Q 001313          906 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPS--TFSNLRNIESLDLSYNKLSWKIPYQ----LVELNTL  979 (1102)
Q Consensus       906 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L  979 (1102)
                      .|+.|+|++|++++..|..|..+++|++|+|++|.|+ .+|.  .+..+++|+.|++++|+++ .+|..    +..+++|
T Consensus        65 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L  142 (176)
T 1a9n_A           65 RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQV  142 (176)
T ss_dssp             SCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTC
T ss_pred             CCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCcc
Confidence            4555666666665443344567777777778777775 4454  6777788888888888887 44553    7778888


Q ss_pred             CEEEcccCcCcc
Q 001313          980 AVFSVAYNNLSG  991 (1102)
Q Consensus       980 ~~l~ls~N~l~~  991 (1102)
                      ++||++.|....
T Consensus       143 ~~Ld~~~n~~~~  154 (176)
T 1a9n_A          143 RVLDFQKVKLKE  154 (176)
T ss_dssp             SEETTEECCHHH
T ss_pred             ceeCCCcCCHHH
Confidence            888888877653

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.42  E-value=2.7e-13  Score=135.43  Aligned_cols=135  Identities=19%  Similarity=0.161  Sum_probs=111.1

Q ss_pred             cccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCccccccccc
Q 001313          775 TFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLH  854 (1102)
Q Consensus       775 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~  854 (1102)
                      .+.++.+|+.|++++|+++. +|......++|++|++++|++++.  ..+..+++|++|++++|.+++..|..|..++  
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--   88 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP--   88 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT--
T ss_pred             hcCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC--
Confidence            57788999999999999985 455433345999999999999965  6788999999999999999876555555443  


Q ss_pred             ccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcc--cccCCCcCC
Q 001313          855 ERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPP--QIGNLTKIQ  932 (1102)
Q Consensus       855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~--~~~~l~~L~  932 (1102)
                                                                         .|+.|+|++|+++ .+|.  .+..+++|+
T Consensus        89 ---------------------------------------------------~L~~L~L~~N~i~-~~~~~~~l~~l~~L~  116 (176)
T 1a9n_A           89 ---------------------------------------------------DLTELILTNNSLV-ELGDLDPLASLKSLT  116 (176)
T ss_dssp             ---------------------------------------------------TCCEEECCSCCCC-CGGGGGGGGGCTTCC
T ss_pred             ---------------------------------------------------CCCEEECCCCcCC-cchhhHhhhcCCCCC
Confidence                                                               6899999999995 5666  788999999


Q ss_pred             EEECCCCCCCCCCcc----cccCCCcCCEEeCCCCcCcc
Q 001313          933 TLNLSHNNLAGPIPS----TFSNLRNIESLDLSYNKLSW  967 (1102)
Q Consensus       933 ~L~Ls~N~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~  967 (1102)
                      .|++++|.++. +|.    .+..+++|+.||+++|.+..
T Consensus       117 ~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          117 YLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             EEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             EEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            99999999984 455    48899999999999998763

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.41  E-value=6.1e-13  Score=132.01  Aligned_cols=90  Identities=21%  Similarity=0.205  Sum_probs=83.8

Q ss_pred             CCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcc
Q 001313          906 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA  985 (1102)
Q Consensus       906 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls  985 (1102)
                      .|+.|+|++|++++..|..|+.+++|++|+|++|+|++..+..|.++++|+.|||++|+|++..+..|..+++|++|+++
T Consensus        34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~  113 (174)
T 2r9u_A           34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY  113 (174)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred             CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence            68899999999999999999999999999999999998888889999999999999999998777779999999999999


Q ss_pred             cCcCcccCCc
Q 001313          986 YNNLSGKIPE  995 (1102)
Q Consensus       986 ~N~l~~~~p~  995 (1102)
                      +|++.+.++.
T Consensus       114 ~N~~~c~~~~  123 (174)
T 2r9u_A          114 NNPWDCECRD  123 (174)
T ss_dssp             SSCBCTTBGG
T ss_pred             CCCccccccc
Confidence            9999987664

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.40  E-value=8.5e-13  Score=130.55  Aligned_cols=109  Identities=24%  Similarity=0.282  Sum_probs=99.4

Q ss_pred             CceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEccc
Q 001313          907 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAY  986 (1102)
Q Consensus       907 L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~  986 (1102)
                      .+.+++++|+++. +|..+.  ++|++|+|++|+|++..|..|.++++|+.|||++|+|++..|..|..+++|++|++++
T Consensus        11 ~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            4789999999985 777664  8999999999999999999999999999999999999988888889999999999999


Q ss_pred             CcCcccCCccccccCCCCccccCCCCCCCCCC
Q 001313          987 NNLSGKIPERAAQFATFNESSYEGNPFLCGPP 1018 (1102)
Q Consensus       987 N~l~~~~p~~~~~~~~~~~~~~~gN~~lC~~~ 1018 (1102)
                      |++++..|..+..+..+..+.+.+||+.|.++
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            99998877767888899999999999999874

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.36  E-value=1.8e-12  Score=128.54  Aligned_cols=108  Identities=22%  Similarity=0.257  Sum_probs=97.7

Q ss_pred             ceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccC
Q 001313          908 SGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYN  987 (1102)
Q Consensus       908 ~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N  987 (1102)
                      +.+++++|+++ .+|..+.  ++|++|+|++|+|++.+|..|+++++|+.|+|++|+|++..+..|.++++|++|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            67999999996 6787775  89999999999999999999999999999999999999877777899999999999999


Q ss_pred             cCcccCCccccccCCCCccccCCCCCCCCCC
Q 001313          988 NLSGKIPERAAQFATFNESSYEGNPFLCGPP 1018 (1102)
Q Consensus       988 ~l~~~~p~~~~~~~~~~~~~~~gN~~lC~~~ 1018 (1102)
                      ++++..+..+..+..+..+.+.+|++.|.++
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            9998777657788889999999999999864

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.35  E-value=1.5e-14  Score=147.77  Aligned_cols=153  Identities=27%  Similarity=0.276  Sum_probs=98.0

Q ss_pred             CCccCeeeccCccCcccCCC------CcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCC
Q 001313          659 LTNLIWLQLEGNHFVGEIPQ------SLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLR  732 (1102)
Q Consensus       659 l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  732 (1102)
                      ...++.++++.+.+.+..|.      .+..+++|++|++++|++++ +| .+..+++|+.|++++|.++ .+|..+..++
T Consensus        17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~   93 (198)
T 1ds9_A           17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD   93 (198)
T ss_dssp             TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred             cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence            34445555555555544443      55555666666666666653 44 5555555666666665555 3444444445


Q ss_pred             cccEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCC-ccccCCCCCCEEEc
Q 001313          733 ILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIP-DRVDGLSQLSYLIL  811 (1102)
Q Consensus       733 ~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L  811 (1102)
                      +|+.|++++|+++                       + +|  .+..+++|++|++++|++++..+ ..+..+++|++|++
T Consensus        94 ~L~~L~L~~N~l~-----------------------~-l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l  147 (198)
T 1ds9_A           94 TLEELWISYNQIA-----------------------S-LS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLL  147 (198)
T ss_dssp             HCSEEEEEEEECC-----------------------C-HH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEE
T ss_pred             cCCEEECcCCcCC-----------------------c-CC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEe
Confidence            5555555555554                       2 33  46677888888888888875433 46788899999999


Q ss_pred             cCccccccCchh----------hcCCCCCCEEECcCccCCC
Q 001313          812 AHNNLEGEVPIQ----------LCRLNQLQLLDLSNNNLHG  842 (1102)
Q Consensus       812 ~~N~l~~~~p~~----------~~~l~~L~~L~Ls~N~l~~  842 (1102)
                      ++|++++.+|..          +..+++|+.||  +|.++.
T Consensus       148 ~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          148 AGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             CSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             cCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            999988776653          78899999987  676653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.33  E-value=5.5e-11  Score=135.58  Aligned_cols=78  Identities=14%  Similarity=0.282  Sum_probs=43.8

Q ss_pred             CceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEccc
Q 001313          907 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAY  986 (1102)
Q Consensus       907 L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~  986 (1102)
                      |+.++|..+ ++..-..+|.++++|+.+.+..+ ++.+-..+|.++++|+.+++.+|....   ..+...+.|+.+.+..
T Consensus       313 L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~  387 (394)
T 4gt6_A          313 LKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAP  387 (394)
T ss_dssp             CCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-------
T ss_pred             cCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCC
Confidence            444444432 33233456777788888888654 665667788888888888888876542   3556667777776665


Q ss_pred             CcC
Q 001313          987 NNL  989 (1102)
Q Consensus       987 N~l  989 (1102)
                      |.+
T Consensus       388 ~~~  390 (394)
T 4gt6_A          388 GSI  390 (394)
T ss_dssp             ---
T ss_pred             CCE
Confidence            543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.29  E-value=8.2e-11  Score=134.16  Aligned_cols=151  Identities=14%  Similarity=0.122  Sum_probs=68.4

Q ss_pred             hhcC-CCCcEEEccCCCCcCCCcCCCCCCCCcCEEEccCCc---CCCCCCchhhhcCCCCcEEEccCCcccccCCcccCC
Q 001313          534 LENN-TKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNN---FQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGN  609 (1102)
Q Consensus       534 ~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~---l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  609 (1102)
                      |.++ ..|+.+.+.+. ++......|.++.+|+.+.+..|.   ++ .|....|..+.+|+.+.+..+ ++.+...+|.+
T Consensus        59 F~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~  135 (394)
T 4gt6_A           59 FCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDSEAFHH  135 (394)
T ss_dssp             TTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECTTTTTT
T ss_pred             ccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehhhhhhh
Confidence            3344 24566655442 444444455555555555555432   22 344444444555555544432 33344445555


Q ss_pred             CCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEE
Q 001313          610 MNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGL  689 (1102)
Q Consensus       610 l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  689 (1102)
                      +.+|+.+.+..+ ++ .++...|..+.+|+.+.+..+ ++.+...+|. ..+|+.+.+..+.. .....+|..+.+++..
T Consensus       136 c~~L~~i~lp~~-~~-~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~-~i~~~af~~c~~l~~~  210 (394)
T 4gt6_A          136 CEELDTVTIPEG-VT-SVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVT-RIGTNAFSECFALSTI  210 (394)
T ss_dssp             CTTCCEEECCTT-CC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCC-EECTTTTTTCTTCCEE
T ss_pred             hcccccccccce-ee-eecccceecccccccccccce-eeEecccccc-ccceeEEEECCccc-ccccchhhhcccccee
Confidence            555555555432 22 444555555555555555433 3333333332 23455554443321 1233344444444444


Q ss_pred             Ecc
Q 001313          690 FLS  692 (1102)
Q Consensus       690 ~l~  692 (1102)
                      ...
T Consensus       211 ~~~  213 (394)
T 4gt6_A          211 TSD  213 (394)
T ss_dssp             EEC
T ss_pred             ccc
Confidence            443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.22  E-value=1.4e-11  Score=138.15  Aligned_cols=110  Identities=16%  Similarity=0.160  Sum_probs=89.6

Q ss_pred             CCceEECCC-CCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEc
Q 001313          906 LLSGLDLSC-NRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSV  984 (1102)
Q Consensus       906 ~L~~L~Ls~-N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l  984 (1102)
                      .|+.|+|++ |+|++..|..|+++++|+.|+|++|+|++.+|..|+++++|+.|||++|+|++..|..+..++ |+.|++
T Consensus        32 ~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l  110 (347)
T 2ifg_A           32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVL  110 (347)
T ss_dssp             CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEEC
T ss_pred             CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEe
Confidence            689999996 999998889999999999999999999999999999999999999999999987776776666 999999


Q ss_pred             ccCcCcccCCccccccCCC---CccccCCCCCCCCCC
Q 001313          985 AYNNLSGKIPERAAQFATF---NESSYEGNPFLCGPP 1018 (1102)
Q Consensus       985 s~N~l~~~~p~~~~~~~~~---~~~~~~gN~~lC~~~ 1018 (1102)
                      ++|++.+.++-  .+|..+   ....+..+.+.|..+
T Consensus       111 ~~N~~~c~c~l--~~~~~~~~~~~~~l~~~~~~C~~~  145 (347)
T 2ifg_A          111 SGNPLHCSCAL--RWLQRWEEEGLGGVPEQKLQCHGQ  145 (347)
T ss_dssp             CSSCCCCCGGG--HHHHHHHHTTCSSCGGGCCCCSSS
T ss_pred             eCCCccCCCcc--HHHHHHHHhCcccccccCCCCCCC
Confidence            99999986552  333222   222334456677543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.20  E-value=3.1e-11  Score=135.36  Aligned_cols=108  Identities=17%  Similarity=0.261  Sum_probs=96.7

Q ss_pred             ceEECCCC-CCCCCCcccccCCCcCCEEECCC-CCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcc
Q 001313          908 SGLDLSCN-RLIGHIPPQIGNLTKIQTLNLSH-NNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA  985 (1102)
Q Consensus       908 ~~L~Ls~N-~l~~~ip~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls  985 (1102)
                      ..++++++ +|++ +|. |..+++|+.|+|++ |.|++..|..|+++++|+.|||++|+|++.+|..|.++++|++|+|+
T Consensus        11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            35799998 8884 888 99999999999996 99999999999999999999999999999999999999999999999


Q ss_pred             cCcCcccCCccccccCCCCccccCCCCCCCCCC
Q 001313          986 YNNLSGKIPERAAQFATFNESSYEGNPFLCGPP 1018 (1102)
Q Consensus       986 ~N~l~~~~p~~~~~~~~~~~~~~~gN~~lC~~~ 1018 (1102)
                      +|+|++..|..+..+. +..+.+.+|++.|+|.
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~  120 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCA  120 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGG
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCccCCCc
Confidence            9999987666444444 7888899999999875

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.19  E-value=4.6e-12  Score=142.05  Aligned_cols=66  Identities=20%  Similarity=0.153  Sum_probs=28.9

Q ss_pred             CCCCEEeCCCCCCCCcccchhhhhhcC-CCCCcEEeCCCCcCCcchhHhhh-cCCCcCEEEcCCCccc
Q 001313          101 QQLESLDLRDNDIAGCVENEGLERLSR-LSNLKMLNLVGNLFNNSILSSLA-RLSSLTSLDLSANRLK  166 (1102)
Q Consensus       101 ~~L~~L~Ls~~~~~~~~~~~~~~~l~~-l~~L~~L~Ls~n~~~~~~~~~l~-~l~~L~~L~Ls~n~l~  166 (1102)
                      ++|++|+|++|.++..........+.. .++|++|+|++|.+++.....+. .+++|++|+|++|.++
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~  139 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLG  139 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCC
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCC
Confidence            445556665555543322111122221 24555555555555433222222 2345555555555543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.17  E-value=9.8e-12  Score=139.40  Aligned_cols=165  Identities=18%  Similarity=0.158  Sum_probs=80.1

Q ss_pred             cEEEEEcCCCCCCccc-ccccccC-CCCCCCCEEeCCCCCCCCcccchhhhhhcCCCCCcEEeCCCCcCCcchhHhhh--
Q 001313           75 RVVVLDLSQTHRGEYW-YLNASLF-TPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLA--  150 (1102)
Q Consensus        75 ~v~~L~L~~~~~~~~~-~~~~~~~-~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~--  150 (1102)
                      +++.++|+++.+.... ..-...+ ...++|++|+|++|.++.......   ...+++|++|+|++|.+++.....++  
T Consensus        73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l---~~~L~~L~~L~Ls~n~l~~~~~~~L~~~  149 (372)
T 3un9_A           73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTL---LPVFLRARKLGLQLNSLGPEACKDLRDL  149 (372)
T ss_dssp             TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHT---HHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred             hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHH---HHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence            4666677666443211 0001111 123567777777776643222111   11234667777777766644333332  


Q ss_pred             ---cCCCcCEEEcCCCcccCCCCh----hhhccCCCCcEEEcCCCcCCcccccCCccccCCCCCcCEEEcCCCcCChhh-
Q 001313          151 ---RLSSLTSLDLSANRLKGSIDI----KELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSI-  222 (1102)
Q Consensus       151 ---~l~~L~~L~Ls~n~l~~~~~~----~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-  222 (1102)
                         ..++|++|+|++|.++.. ..    ..+..+++|++|+|++|.+........+..+..+++|++|+|++|.+++.. 
T Consensus       150 L~~~~~~L~~L~Ls~n~l~~~-~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~  228 (372)
T 3un9_A          150 LLHDQCQITTLRLSNNPLTAA-GVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA  228 (372)
T ss_dssp             HHSTTCCCCEEECCSSCCHHH-HHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred             HHhcCCccceeeCCCCCCChH-HHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence               346666666666665421 11    222445556666666666554332222234445555666666666555422 


Q ss_pred             ---hHhhhccCCCcEEEccCCcCC
Q 001313          223 ---LSSLARLSSLRSLLLYDNRLE  243 (1102)
Q Consensus       223 ---~~~l~~l~~L~~L~L~~n~l~  243 (1102)
                         +..+...++|++|+|++|.+.
T Consensus       229 ~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          229 LALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHHHHhCCCCCEEeccCCCCC
Confidence               223334455555555555543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.04  E-value=1.7e-08  Score=114.44  Aligned_cols=70  Identities=10%  Similarity=0.100  Sum_probs=41.3

Q ss_pred             CCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCC
Q 001313          906 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELN  977 (1102)
Q Consensus       906 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  977 (1102)
                      .|+.+++.++.++..-..+|.++++|+.++|..+ ++.+-..+|.++++|+.+.+..+ ++..-..+|.+..
T Consensus       287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence            3555555555555444456667777777777544 55555667777777777777654 4433344555543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.98  E-value=2.6e-08  Score=112.91  Aligned_cols=313  Identities=10%  Similarity=0.057  Sum_probs=157.7

Q ss_pred             cCCCcccEEEeccccCCCCCChhhhhcCCCCcEEEccCCCCcCCCcCCCCCCCCcCEEEccCCcCCCCCCchhhhcCCCC
Q 001313          510 YNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRL  589 (1102)
Q Consensus       510 ~~~~~L~~L~ls~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L  589 (1102)
                      ....+|+.+.+...  ...+++..|.+|++|+.+.+.++ ++......|..+ +|+.+.+..+ ++ .|....+. ..+|
T Consensus        43 ~~~~~i~~v~ip~~--vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~-~~~L  115 (379)
T 4h09_A           43 KDRDRISEVRVNSG--ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQ-GTDL  115 (379)
T ss_dssp             GGGGGCSEEEECTT--EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTT-TCCC
T ss_pred             ccccCCEEEEeCCC--ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-Eeccceec-cCCc
Confidence            33445555555432  12344444556666666666543 444444445444 4555554432 22 34444444 2356


Q ss_pred             cEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccC
Q 001313          590 TVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEG  669 (1102)
Q Consensus       590 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  669 (1102)
                      +.+.+..+ +..+...+|.++ +++...+..+ ++ .+....|..+..++...+..+...........           .
T Consensus       116 ~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~-~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~-----------~  180 (379)
T 4h09_A          116 DDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VT-TIKDGIGYKAENLEKIEVSSNNKNYVAENYVL-----------Y  180 (379)
T ss_dssp             SEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECSCTTTTCTTCCEEEECTTCSSEEEETTEE-----------E
T ss_pred             ccccCCCc-cccccccccccc-eeeeeeccce-ee-ccccchhcccccccccccccccceeeccccee-----------c
Confidence            66665543 222333344443 3444444332 22 34444444555555555544332111100000           0


Q ss_pred             ccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCC
Q 001313          670 NHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLP  749 (1102)
Q Consensus       670 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p  749 (1102)
                      +. .......+..+..+..+.+....- ......+..+..|+.+.+..+ ++.....+|.++..|+.+.+..+ ++..-.
T Consensus       181 ~~-~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~  256 (379)
T 4h09_A          181 NK-NKTILESYPAAKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGS  256 (379)
T ss_dssp             ET-TSSEEEECCTTCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECT
T ss_pred             cc-ccceecccccccccccccccccee-EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCc
Confidence            00 001111223333444443332221 123334444555555555433 22233344555555555555443 221111


Q ss_pred             CC-CCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCC
Q 001313          750 SC-YDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLN  828 (1102)
Q Consensus       750 ~~-~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~  828 (1102)
                      .. .++.+++.+.+..+ +. .++..+|.+|++|+.+++.++.++.+.+.+|.++.+|+.+.|..+ ++.....+|.+|+
T Consensus       257 ~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~  333 (379)
T 4h09_A          257 FLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCK  333 (379)
T ss_dssp             TTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred             cccceeehhcccccccc-ce-eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCC
Confidence            11 13445555555433 22 466668899999999999888888777788999999999999754 6655667889999


Q ss_pred             CCCEEECcCccCCCCCCccccccc
Q 001313          829 QLQLLDLSNNNLHGHIPSCFDNTT  852 (1102)
Q Consensus       829 ~L~~L~Ls~N~l~~~~p~~~~~~~  852 (1102)
                      +|+.+.+..+ ++..-..+|.+..
T Consensus       334 ~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          334 ALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             TCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             CCCEEEECCc-cCEEchhHhhCCC
Confidence            9998888654 5544556666554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.53  E-value=2.9e-08  Score=109.93  Aligned_cols=83  Identities=22%  Similarity=0.292  Sum_probs=41.7

Q ss_pred             CccccEEEccCcccccccCcccc---cCccCccEEEccCccCccc----CCccccCCCCCCEEEccCccccccCchhhcC
Q 001313          754 FVCIEQVHLSKNMLHGQLKEGTF---FNCLTLMILDLSYNHLNGN----IPDRVDGLSQLSYLILAHNNLEGEVPIQLCR  826 (1102)
Q Consensus       754 ~~~L~~L~l~~n~l~~~i~~~~~---~~~~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  826 (1102)
                      +++|+.|++.+|.+.+..+. .+   ..+++|++|+|+.|.+++.    ++..+..+++|+.|+|++|.++...-..+..
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~-~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~  329 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVE-MFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK  329 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHH-HHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred             CCCcCEEeCCCCCCchHHHH-HHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence            34555555555544432211 11   1355667777766666653    2223344566667777666665433333332


Q ss_pred             -CCCCCEEECcCcc
Q 001313          827 -LNQLQLLDLSNNN  839 (1102)
Q Consensus       827 -l~~L~~L~Ls~N~  839 (1102)
                       +  ...+++++++
T Consensus       330 al--g~~~~~~~~~  341 (362)
T 2ra8_A          330 SL--PMKIDVSDSQ  341 (362)
T ss_dssp             HC--CSEEECCSBC
T ss_pred             Hc--CCEEEecCCc
Confidence             2  3456666654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.51  E-value=4.7e-09  Score=109.86  Aligned_cols=83  Identities=25%  Similarity=0.271  Sum_probs=52.4

Q ss_pred             hcCCCcCEEEcCCCcccCCCC-hhhhccCCCCcEEEcCCCcCCcccccCCccccCCCCCcCEEEcCCCcCChhhh-----
Q 001313          150 ARLSSLTSLDLSANRLKGSID-IKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSIL-----  223 (1102)
Q Consensus       150 ~~l~~L~~L~Ls~n~l~~~~~-~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-----  223 (1102)
                      .++++|++|+|++|++.+..+ +..+..+++|++|+|++|.+.+...   ...+..+ +|++|+|++|.+.+.+|     
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~---l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y  242 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE---LDKIKGL-KLEELWLDGNSLCDTFRDQSTY  242 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG---GGGGTTS-CCSEEECTTSTTGGGCSSHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchh---hhhcccC-CcceEEccCCcCccccCcchhH
Confidence            567788888888888775311 1345677777777777777776521   1223333 77777777777765332     


Q ss_pred             --HhhhccCCCcEEE
Q 001313          224 --SSLARLSSLRSLL  236 (1102)
Q Consensus       224 --~~l~~l~~L~~L~  236 (1102)
                        ..+..+++|+.||
T Consensus       243 ~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          243 ISAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHHCTTCCEES
T ss_pred             HHHHHHHCcccCeEC
Confidence              3456667777665

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.51  E-value=1.2e-07  Score=94.52  Aligned_cols=119  Identities=13%  Similarity=0.106  Sum_probs=56.5

Q ss_pred             hhcCCCCCcEEeCCCC-cCCcc----hhHhhhcCCCcCEEEcCCCcccCCCC---hhhhccCCCCcEEEcCCCcCCcccc
Q 001313          124 RLSRLSNLKMLNLVGN-LFNNS----ILSSLARLSSLTSLDLSANRLKGSID---IKELDSLRDLEKLNIGRNMIDKFVV  195 (1102)
Q Consensus       124 ~l~~l~~L~~L~Ls~n-~~~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~---~~~l~~l~~L~~L~Ls~n~~~~~~~  195 (1102)
                      .+...+.|++|+|++| .+...    +...+...++|++|+|++|.+.....   ...+...++|++|+|++|.+.....
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            3445555666666655 55432    33444455666666666665542100   1122333455555555555544322


Q ss_pred             cCCccccCCCCCcCEEEc--CCCcCChhhh----HhhhccCCCcEEEccCCcC
Q 001313          196 SKGPKRLSRLNNLKVFDL--SGNLFNNSIL----SSLARLSSLRSLLLYDNRL  242 (1102)
Q Consensus       196 ~~~~~~l~~l~~L~~L~L--s~n~l~~~~~----~~l~~l~~L~~L~L~~n~l  242 (1102)
                      ......+...+.|++|+|  ++|.++....    ..+...++|++|++++|.+
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            222244455556666666  5566554322    2233334555555555443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.46  E-value=3.7e-07  Score=101.07  Aligned_cols=142  Identities=23%  Similarity=0.250  Sum_probs=73.9

Q ss_pred             hhccCCCCcEEEcCCCcCCcccccCCccccCCCCCcCEEEcCCCcCChhhhHhhh--ccCCCcEEEccC--CcCCCCCch
Q 001313          173 ELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLA--RLSSLRSLLLYD--NRLEGSIDV  248 (1102)
Q Consensus       173 ~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~L~~--n~l~~~~~~  248 (1102)
                      .+..+++|+.|+++++.-...      ..+ .+++|++|++..|.++......++  .+++|++|+|+.  +...+....
T Consensus       167 ll~~~P~L~~L~L~g~~~l~l------~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~  239 (362)
T 2ra8_A          167 VLDAMPLLNNLKIKGTNNLSI------GKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDM  239 (362)
T ss_dssp             HHHTCTTCCEEEEECCBTCBC------CSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCG
T ss_pred             HHhcCCCCcEEEEeCCCCcee------ccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhH
Confidence            345556666666665521111      112 267777777777777665555554  677888887753  221111100


Q ss_pred             ----hhc--cCCCCCcEEecccCccCCcchhhhhccccccceeccccccccCchhhhhhcCCCCCCCEEeCCCCCccccc
Q 001313          249 ----KEF--DSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETV  322 (1102)
Q Consensus       249 ----~~l--~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~  322 (1102)
                          ..+  ..+++|++|++.+|.+.+.....+                        .....+|+|++|+|+.|.+....
T Consensus       240 ~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~l------------------------a~a~~~~~L~~LdLs~n~L~d~G  295 (362)
T 2ra8_A          240 NVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMF------------------------LESDILPQLETMDISAGVLTDEG  295 (362)
T ss_dssp             GGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHH------------------------HHCSSGGGCSEEECCSSCCBHHH
T ss_pred             HHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHH------------------------HhCccCCCCCEEECCCCCCChHH
Confidence                012  246778888877776653211111                        11124566666666666654422


Q ss_pred             c-ccccccccccccceeecccchh
Q 001313          323 T-TTTQGFPHFKSLKELYMDDARI  345 (1102)
Q Consensus       323 ~-~~~~~~~~l~~L~~L~l~~~~~  345 (1102)
                      . .....+..+++|+.|+++.|.+
T Consensus       296 ~~~L~~~L~~l~~L~~L~L~~n~i  319 (362)
T 2ra8_A          296 ARLLLDHVDKIKHLKFINMKYNYL  319 (362)
T ss_dssp             HHHHHTTHHHHTTCSEEECCSBBC
T ss_pred             HHHHHhhcccCCcceEEECCCCcC
Confidence            1 1122334566677777766643

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.31  E-value=4.7e-07  Score=90.33  Aligned_cols=48  Identities=10%  Similarity=0.124  Sum_probs=26.5

Q ss_pred             chhHhhhcCCCcCEEEcCCC-cccCCCCh----hhhccCCCCcEEEcCCCcCCc
Q 001313          144 SILSSLARLSSLTSLDLSAN-RLKGSIDI----KELDSLRDLEKLNIGRNMIDK  192 (1102)
Q Consensus       144 ~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~----~~l~~l~~L~~L~Ls~n~~~~  192 (1102)
                      .+...+...++|++|+|++| .+... ..    ..+...++|++|+|++|.+..
T Consensus        27 ~l~~~l~~~~~L~~L~L~~n~~i~~~-g~~~l~~~L~~~~~L~~L~Ls~n~i~~   79 (185)
T 1io0_A           27 TLKRIQNNDPDLEEVNLNNIMNIPVP-TLKACAEALKTNTYVKKFSIVGTRSND   79 (185)
T ss_dssp             HHHHHHTTCTTCCEEECTTCTTCCHH-HHHHHHHHHTTCCSCCEEECTTSCCCH
T ss_pred             HHHHHHhcCCCCCEEEecCCCCCCHH-HHHHHHHHHHhCCCcCEEECcCCCCCh
Confidence            44566777788888888887 66521 11    122334445555555544443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.18  E-value=1.3e-06  Score=91.38  Aligned_cols=65  Identities=26%  Similarity=0.332  Sum_probs=28.8

Q ss_pred             CCcCCEEECCCCCCCC--CCcccccCCCcCCEEeCCCCcCcccCchhhhcCC--CCCEEEcccCcCcccCC
Q 001313          928 LTKIQTLNLSHNNLAG--PIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELN--TLAVFSVAYNNLSGKIP  994 (1102)
Q Consensus       928 l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~l~ls~N~l~~~~p  994 (1102)
                      +++|++|+||+|+|++  .+|..+..+++|+.|||++|+|++.  ..+..+.  .|+.|++++|++++.+|
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            3444445555554444  2233344444455555555554432  1222222  44555555555544443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.90  E-value=8e-06  Score=78.80  Aligned_cols=59  Identities=17%  Similarity=0.366  Sum_probs=36.8

Q ss_pred             CCCEEeCCCCCCCCcccchhhhhhcCCCCCcEEeCCCCc-CCcchhHhhhcC----CCcCEEEcCCCc
Q 001313          102 QLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNL-FNNSILSSLARL----SSLTSLDLSANR  164 (1102)
Q Consensus       102 ~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~-~~~~~~~~l~~l----~~L~~L~Ls~n~  164 (1102)
                      .|++||+++|.++    +.++..+..+++|++|+|++|. +++.-...++.+    ++|++|+|++|.
T Consensus        62 ~L~~LDLs~~~It----d~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~  125 (176)
T 3e4g_A           62 KIQAIDATDSCIM----SIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCG  125 (176)
T ss_dssp             CEEEEEEESCCCC----GGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCT
T ss_pred             eEeEEeCcCCCcc----HHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCC
Confidence            5677777777643    3345666677777777777764 665555555554    356666666664

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.80  E-value=1.4e-05  Score=77.14  Aligned_cols=84  Identities=13%  Similarity=0.190  Sum_probs=42.5

Q ss_pred             CCcCEEEcCCCcccCCCChhhhccCCCCcEEEcCCCcCCcccccCCccccCCCCCcCEEEcCCCc-CChhhhHhhhcc--
Q 001313          153 SSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNL-FNNSILSSLARL--  229 (1102)
Q Consensus       153 ~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l--  229 (1102)
                      .+|++||+++|.++.. ....+                            .++++|++|+|++|. +++.....++.+  
T Consensus        61 ~~L~~LDLs~~~Itd~-GL~~L----------------------------~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~  111 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSI-GFDHM----------------------------EGLQYVEKIRLCKCHYIEDGCLERLSQLEN  111 (176)
T ss_dssp             CCEEEEEEESCCCCGG-GGGGG----------------------------TTCSCCCEEEEESCTTCCHHHHHHHHTCHH
T ss_pred             ceEeEEeCcCCCccHH-HHHHh----------------------------cCCCCCCEEEeCCCCccCHHHHHHHHhccc
Confidence            4677888887776532 23333                            445555555555542 444444444442  


Q ss_pred             --CCCcEEEccCCc-CCCCCchhhccCCCCCcEEecccCc
Q 001313          230 --SSLRSLLLYDNR-LEGSIDVKEFDSLSNLEELDMSYNE  266 (1102)
Q Consensus       230 --~~L~~L~L~~n~-l~~~~~~~~l~~l~~L~~L~L~~n~  266 (1102)
                        ++|++|+|++|. ++ ......+..+++|++|++++|.
T Consensus       112 ~~~~L~~L~Ls~C~~IT-D~Gl~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          112 LQKSMLEMEIISCGNVT-DKGIIALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             HHHHCCEEEEESCTTCC-HHHHHHGGGCTTCCEEEEESCT
T ss_pred             ccCCCCEEEcCCCCcCC-HHHHHHHhcCCCCCEEECCCCC
Confidence              245555555553 22 2222234455555555555553

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.48  E-value=0.00018  Score=70.72  Aligned_cols=90  Identities=13%  Similarity=0.193  Sum_probs=40.2

Q ss_pred             cCCCCCcEEeCCCC-cCCc----chhHhhhcCCCcCEEEcCCCcccCCC---ChhhhccCCCCcEEEcCCCcCCcccccC
Q 001313          126 SRLSNLKMLNLVGN-LFNN----SILSSLARLSSLTSLDLSANRLKGSI---DIKELDSLRDLEKLNIGRNMIDKFVVSK  197 (1102)
Q Consensus       126 ~~l~~L~~L~Ls~n-~~~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~~l~~l~~L~~L~Ls~n~~~~~~~~~  197 (1102)
                      .+-+.|++|+|+++ .+..    .+...+..-+.|++|+|++|++....   -.+.+..-+.|++|+|++|.|.......
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            34455555555553 4442    23344444555666666666554210   0112223344444444444444333222


Q ss_pred             CccccCCCCCcCEEEcCC
Q 001313          198 GPKRLSRLNNLKVFDLSG  215 (1102)
Q Consensus       198 ~~~~l~~l~~L~~L~Ls~  215 (1102)
                      ..+.+..-+.|++|+|++
T Consensus       118 la~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             HHHHTTTTCCCSEEECCC
T ss_pred             HHHHHhhCCceeEEECCC
Confidence            223444445555555553

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.06  E-value=0.00082  Score=66.07  Aligned_cols=74  Identities=14%  Similarity=0.202  Sum_probs=33.4

Q ss_pred             hhHhhhcCCCcCEEEcCCC-cccCCCCh----hhhccCCCCcEEEcCCCcCCcccccCCccccCCCCCcCEEEcCCCcCC
Q 001313          145 ILSSLARLSSLTSLDLSAN-RLKGSIDI----KELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFN  219 (1102)
Q Consensus       145 ~~~~l~~l~~L~~L~Ls~n-~l~~~~~~----~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~  219 (1102)
                      +...+.+-+.|++|+|++| ++... ..    +.+..-+.|++|+|++|.+.........+.+..-+.|++|+|++|.++
T Consensus        33 l~~ll~~n~~L~~L~L~~nn~igd~-ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           33 INRLREDDTDLKEVNINNMKRVSKE-RIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             HHHHHTTCSSCCEEECTTCCSSCHH-HHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             HHHHHhcCCCccEEECCCCCCCCHH-HHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            3444555677888888775 55311 11    222333444444444444443332222223333344444444444443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.84  E-value=0.0017  Score=59.68  Aligned_cols=37  Identities=24%  Similarity=0.108  Sum_probs=18.3

Q ss_pred             CCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcc
Q 001313          955 IESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSG  991 (1102)
Q Consensus       955 L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~  991 (1102)
                      |+.|||++|+|+...+..|..+++|++|+|++|++.+
T Consensus        33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             CCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            4444444444444333444445555555555555544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.71  E-value=0.0027  Score=58.32  Aligned_cols=57  Identities=21%  Similarity=0.274  Sum_probs=49.8

Q ss_pred             ceEECCCCCCC-CCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCc
Q 001313          908 SGLDLSCNRLI-GHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS  966 (1102)
Q Consensus       908 ~~L~Ls~N~l~-~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  966 (1102)
                      ..+|.+++.++ ..+|..+.  ++|+.|+|++|+|+.+.+..|..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            47999999997 46776654  47999999999999888889999999999999999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	1102
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-19
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-19
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-18
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-13
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-17
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-16
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-11
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-11
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	9e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.004
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-07
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	8e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	9e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	7e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	8e-07
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	6e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	6e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.004
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	4e-06
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	4e-05
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	2e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	7e-06
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	8e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	7e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	7e-05
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.003
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	5e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	6e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	4e-04
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.002

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 88.1 bits (217), Expect = 6e-19
 Identities = 59/385 (15%), Positives = 113/385 (29%), Gaps = 41/385 (10%)

Query: 616 LDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGE 675
             L    +T  + +        + +L      ++         L NL  +    N     
Sbjct: 27  TVLGKTNVTDTVSQ---TDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDI 81

Query: 676 IPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQ 735
            P  L   + L  + ++NN ++   P           +   +     P+       R+  
Sbjct: 82  TP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 139

Query: 736 ILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHG-------------QLKEGTFFNCLTL 782
             +   +  + S  +    +           L                           L
Sbjct: 140 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNL 199

Query: 783 MILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHG 842
             L  + N ++   P  +   + L  L L  N L+      L  L  L  LDL+NN +  
Sbjct: 200 ESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN 255

Query: 843 HIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGR 902
             P               + L   +     +  +        L + +     +       
Sbjct: 256 LAPLS-----------GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS 304

Query: 903 VPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSY 962
               L+ L L  N +    P  + +LTK+Q L  ++N ++    S+ +NL NI  L   +
Sbjct: 305 NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGH 360

Query: 963 NKLSWKIPYQLVELNTLAVFSVAYN 987
           N++S   P  L  L  +    +   
Sbjct: 361 NQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 86.6 bits (213), Expect = 2e-18
 Identities = 75/414 (18%), Positives = 135/414 (32%), Gaps = 64/414 (15%)

Query: 562 KQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNN 621
            +     + K N    +     D ++ L    + + ++DG        +N L  ++ SNN
Sbjct: 22  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNN 76

Query: 622 QLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLS 681
           QLT   P       V +        ++       N     L   Q+     +  +     
Sbjct: 77  QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 136

Query: 682 KCSSLQGLFL------------SNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFC 729
              S   +               +        + L NLT L  + +  N +         
Sbjct: 137 LELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV--LA 194

Query: 730 QLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSY 789
           +L  L+ L  ++N IS   P       ++++ L+ N L      GT  +   L  LDL+ 
Sbjct: 195 KLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD---IGTLASLTNLTDLDLAN 250

Query: 790 NHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFD 849
           N ++   P  + GL++L+ L L  N +    P+          L+ +       I +  +
Sbjct: 251 NQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKN 308

Query: 850 NTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSG 909
            T L   +NN S + P  +                                    + L  
Sbjct: 309 LTYLTLYFNNISDISPVSS-----------------------------------LTKLQR 333

Query: 910 LDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYN 963
           L  + N++       + NLT I  L+  HN ++   P   +NL  I  L L+  
Sbjct: 334 LFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 72.7 bits (177), Expect = 7e-14
 Identities = 64/401 (15%), Positives = 138/401 (34%), Gaps = 42/401 (10%)

Query: 252 DSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTL 311
            +L+   +  +    + +     + + L +++ L   R+GI+     +  +    +L  +
Sbjct: 19  TALAEKMKTVLGKTNVTD---TVSQTDLDQVTTLQADRLGIKS----IDGVEYLNNLTQI 71

Query: 312 DLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSS 371
           + S N  T+          +   L ++ M++ +IA  T    +   +  ++    +++  
Sbjct: 72  NFSNNQLTDI-----TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID 126

Query: 372 VSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSP 431
              N   L++       + ++                 +T L+ L   +      ISS+ 
Sbjct: 127 PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK 186

Query: 432 LIH------LTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTT 485
           +        LT++E LI ++N       + PL   + L       N++            
Sbjct: 187 VSDISVLAKLTNLESLIATNNQIS---DITPLGILTNLDELSLNGNQL--------KDIG 235

Query: 486 PNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSL 545
               L +L       + I+    L     L  ++L   +++   P   L   T L     
Sbjct: 236 TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNEN 295

Query: 546 VNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPS 605
                      PI + K L  L +  NN     P+     L++L     + N +  S  S
Sbjct: 296 QL-----EDISPISNLKNLTYLTLYFNNISDISPVSS---LTKLQRLFFANNKV--SDVS 345

Query: 606 SFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNN 646
           S  N+  + +L   +NQ++   P         +  L L++ 
Sbjct: 346 SLANLTNINWLSAGHNQISDLTPLA---NLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 71.2 bits (173), Expect = 2e-13
 Identities = 69/388 (17%), Positives = 127/388 (32%), Gaps = 66/388 (17%)

Query: 100 FQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLD 159
             +     L   ++   V        + L  +  L        +  +  +  L++LT ++
Sbjct: 21  LAEKMKTVLGKTNVTDTVS------QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQIN 72

Query: 160 LSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPK------------------- 200
            S N+L     +K L  L D+   N     I                             
Sbjct: 73  FSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 132

Query: 201 ----------RLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKE 250
                      +S ++ L        L   + ++ L  L++L +L   D       D+  
Sbjct: 133 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV 192

Query: 251 FDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNT 310
              L+NLE L  + N+I +       + L +LS        I        ++ S  +L  
Sbjct: 193 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI-------GTLASLTNLTD 245

Query: 311 LDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQY------ 364
           LDL+ N  +               L EL +   +I+  +    +   +   +        
Sbjct: 246 LDLANNQISNLA-----PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDI 300

Query: 365 ------LSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDV 418
                  +L+  ++  N+ +    +  L  LQ L  A+N +       LAN+T++  L  
Sbjct: 301 SPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSA 358

Query: 419 SSNQLIGSISSSPLIHLTSIEDLILSDN 446
             NQ+       PL +LT I  L L+D 
Sbjct: 359 GHNQISDLT---PLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 71.2 bits (173), Expect = 2e-13
 Identities = 74/429 (17%), Positives = 143/429 (33%), Gaps = 58/429 (13%)

Query: 170 DIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARL 229
            I    +L +  K  +G+  +   V        + L+ +           +  +  +  L
Sbjct: 14  QIFTDTALAEKMKTVLGKTNVTDTV------SQTDLDQVTTLQADRLGIKS--IDGVEYL 65

Query: 230 SSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLR 289
           ++L  +   +N+L          +L+ L ++ M+ N+I +       + L  L+  +   
Sbjct: 66  NNLTQINFSNNQLTDIT---PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQI 122

Query: 290 VGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNT 349
             I     L        S NT+         T             LK L           
Sbjct: 123 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLE---- 178

Query: 350 SFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLAN 409
                                 +S+N  +    L  L +L+ L   +N +    P     
Sbjct: 179 -------------------RLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG--I 217

Query: 410 MTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAE 469
           +T+L  L ++ NQL        L  LT++ DL L++N      +L PL   ++L      
Sbjct: 218 LTNLDELSLNGNQLKDI---GTLASLTNLTDLDLANNQIS---NLAPLSGLTKLTELKLG 271

Query: 470 NNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEF 529
            N+I+           P   L +L       + +     + N  +L Y+ L    +++  
Sbjct: 272 ANQISNIS--------PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS 323

Query: 530 PNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRL 589
           P   + + TKL++L   N+ +       + +   +  L    N      PL     L+R+
Sbjct: 324 P---VSSLTKLQRLFFANNKVSDVS--SLANLTNINWLSAGHNQISDLTPLAN---LTRI 375

Query: 590 TVFNISMNA 598
           T   ++  A
Sbjct: 376 TQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 62.3 bits (150), Expect = 1e-10
 Identities = 48/227 (21%), Positives = 85/227 (37%), Gaps = 41/227 (18%)

Query: 61  CCQWERVSCNNTMGRVVVLDLSQTHRGEYWYLNASLFTPFQ---QLESLDLRDNDIAGCV 117
             +   +S N      V+  L+            S  TP      L+ L L  N +    
Sbjct: 176 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQL---- 231

Query: 118 ENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDS- 176
             + +  L+ L+NL  L+L  N  +N  L+ L+ L+ LT L L AN++     +  L + 
Sbjct: 232 --KDIGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLAGLTAL 287

Query: 177 ------------------LRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLF 218
                             L++L  L +  N I           +S L  L+    + N  
Sbjct: 288 TNLELNENQLEDISPISNLKNLTYLTLYFNNI------SDISPVSSLTKLQRLFFANNKV 341

Query: 219 NNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYN 265
             S +SSLA L+++  L    N++          +L+ + +L ++  
Sbjct: 342 --SDVSSLANLTNINWLSAGHNQISDLT---PLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 59.2 bits (142), Expect = 1e-09
 Identities = 79/394 (20%), Positives = 150/394 (38%), Gaps = 34/394 (8%)

Query: 152 LSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVF 211
           L+      L    +  ++   +LD +     L   R  I           +  LNNL   
Sbjct: 21  LAEKMKTVLGKTNVTDTVSQTDLDQVT---TLQADRLGIKSI------DGVEYLNNLTQI 71

Query: 212 DLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFE 271
           + S N   +  ++ L  L+ L  +L+ +N++     +    +L+ L   +    +ID  +
Sbjct: 72  NFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK 129

Query: 272 VPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPH 331
                + L   S        +   + L Q        +   L+     E +  ++     
Sbjct: 130 NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD 189

Query: 332 FKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQE 391
              L +L   ++ IA N     I     P     +L   S++ N       L  L +L +
Sbjct: 190 ISVLAKLTNLESLIATNNQISDIT----PLGILTNLDELSLNGNQLKDIGTLASLTNLTD 245

Query: 392 LHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIP 451
           L +A+N +    P     +T L  L + +NQ+       PL  LT++ +L L++N  +  
Sbjct: 246 LDLANNQISNLAPLS--GLTKLTELKLGANQISNIS---PLAGLTALTNLELNENQLEDI 300

Query: 452 ISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYN 511
             +  L N   L       N I+ +I    SLT    +LQ L  ++   + ++    L N
Sbjct: 301 SPISNLKN---LTYLTLYFNNIS-DISPVSSLT----KLQRLFFAN---NKVSDVSSLAN 349

Query: 512 QHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSL 545
             ++ ++   H ++++  P   L N T++ QL L
Sbjct: 350 LTNINWLSAGHNQISDLTP---LANLTRITQLGL 380

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 58.5 bits (140), Expect = 2e-09
 Identities = 47/256 (18%), Positives = 88/256 (34%), Gaps = 23/256 (8%)

Query: 61  CCQWERVSCNNTMGRVVVLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENE 120
                    +       +  L+     E   ++++  +    L  L   ++ IA   +  
Sbjct: 151 SGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQIS 210

Query: 121 GLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDL 180
            +  L  L+NL  L+L GN   +  + +LA L++LT LDL+ N++     +  L  L +L
Sbjct: 211 DITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTEL 268

Query: 181 EKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDN 240
           +      + I           L    N        +            L +L  L LY N
Sbjct: 269 KLGANQISNISPLAGLTALTNLELNENQLEDISPIS-----------NLKNLTYLTLYFN 317

Query: 241 RLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQ 300
            +          SL+ L+ L  + N         + + L  +++L      I D    L 
Sbjct: 318 NISDIS---PVSSLTKLQRLFFANN---KVSDVSSLANLTNINWLSAGHNQISD----LT 367

Query: 301 SMGSFPSLNTLDLSYN 316
            + +   +  L L+  
Sbjct: 368 PLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.9 bits (110), Expect = 1e-05
 Identities = 51/338 (15%), Positives = 104/338 (30%), Gaps = 34/338 (10%)

Query: 658 NLTNLIWLQLEGNHFVGEIPQS-LSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMP 716
            L   +   L   +    + Q+ L + ++LQ   L   S+ G     +  L  L  I   
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFS 74

Query: 717 KNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTF 776
            N +    P     L  L  + +++N          D   +  +     +     +    
Sbjct: 75  NNQLTDITP--LKNLTKLVDILMNNNQ-------IADITPLANLTNLTGLTLFNNQITDI 125

Query: 777 FNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLS 836
                L  L+      N                +   N +    P+      +   +  +
Sbjct: 126 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN 185

Query: 837 NNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSIT 896
             +    +    +  +L    N  S + P                   L+        + 
Sbjct: 186 KVSDISVLAKLTNLESLIATNNQISDITPL-------------GILTNLDELSLNGNQLK 232

Query: 897 YTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIE 956
                   + L+ LDL+ N++    P  +  LTK+  L L  N ++   P   + L  + 
Sbjct: 233 DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALT 288

Query: 957 SLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIP 994
           +L+L+ N+   +    +  L  L   ++ +NN+S   P
Sbjct: 289 NLELNENQ--LEDISPISNLKNLTYLTLYFNNISDISP 324

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 86.2 bits (212), Expect = 9e-19
 Identities = 49/270 (18%), Positives = 94/270 (34%), Gaps = 15/270 (5%)

Query: 555 RLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQ 614
           ++P        LLD+  N        +  + L  L    +  N +    P +F  +  L+
Sbjct: 24  KVPKDLPPDTALLDLQNNKITEIKDGDFKN-LKNLHTLILINNKISKISPGAFAPLVKLE 82

Query: 615 FLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVG 674
            L LS NQL  E+PE +      LR        +   +F+   N   ++ L        G
Sbjct: 83  RLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFN-GLNQMIVVELGTNPLKSSG 140

Query: 675 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRIL 734
               +      L  + +++ +++        +LT L    +  N I          L  L
Sbjct: 141 IENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELH---LDGNKITKVDAASLKGLNNL 197

Query: 735 QILDISDNNISGSLPS-CYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLN 793
             L +S N+IS        +   + ++HL+ N L          +   + ++ L  N+++
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG--LADHKYIQVVYLHNNNIS 255

Query: 794 G------NIPDRVDGLSQLSYLILAHNNLE 817
                    P      +  S + L  N ++
Sbjct: 256 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.5 bits (179), Expect = 1e-14
 Identities = 56/275 (20%), Positives = 94/275 (34%), Gaps = 31/275 (11%)

Query: 613 LQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHF 672
           L+ +  S+  L  ++P+ L         L L NN +         NL NL  L L  N  
Sbjct: 12  LRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 673 VGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIE----------- 721
               P + +    L+ L+LS N L     +    L  LR        +            
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 127

Query: 722 ------------GPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHG 769
                       G     F  ++ L  + I+D NI+           + ++HL  N +  
Sbjct: 128 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITK 185

Query: 770 QLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQ 829
                +      L  L LS+N ++      +     L  L L +N L  +VP  L     
Sbjct: 186 VD-AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKY 243

Query: 830 LQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQ 864
           +Q++ L NNN+     + F     + +  + S + 
Sbjct: 244 IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS 278

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.1 bits (152), Expect = 4e-11
 Identities = 41/209 (19%), Positives = 68/209 (32%), Gaps = 9/209 (4%)

Query: 781 TLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNL 840
              +LDL  N +          L  L  LIL +N +    P     L +L+ L LS N L
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 841 HGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQ 900
                           + N  +         +   + V+     L+S      +     +
Sbjct: 92  KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 151

Query: 901 GRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDL 960
                 LS + ++   +   IP   G    +  L+L  N +     ++   L N+  L L
Sbjct: 152 ------LSYIRIADTNI-TTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 202

Query: 961 SYNKLSWKIPYQLVELNTLAVFSVAYNNL 989
           S+N +S      L     L    +  N L
Sbjct: 203 SFNSISAVDNGSLANTPHLRELHLNNNKL 231

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.8 bits (133), Expect = 9e-09
 Identities = 45/296 (15%), Positives = 88/296 (29%), Gaps = 47/296 (15%)

Query: 360 PSIQYLSLSNSSVSNNSRTLDQG-LCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDV 418
           P    L L N    N    +  G    L +L  L + +N +    P   A +  L  L +
Sbjct: 31  PDTALLDLQN----NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 86

Query: 419 SSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEII 478
           S NQL       P     ++++L + +N                               +
Sbjct: 87  SKNQL----KELPEKMPKTLQELRVHENEIT---------------------------KV 115

Query: 479 ESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNT 538
                   N  +   L ++  +              L Y+R++   +             
Sbjct: 116 RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP----P 171

Query: 539 KLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNA 598
            L +L L  + +       +     L  L +S N+               L   +++ N 
Sbjct: 172 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN-GSLANTPHLRELHLNNNK 230

Query: 599 LDGSIPSSFGNMNFLQFLDLSNNQLTG-----EIPEHLAMGCVSLRSLALSNNNLE 649
           L   +P    +  ++Q + L NN ++        P        S   ++L +N ++
Sbjct: 231 LV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.2 bits (121), Expect = 3e-07
 Identities = 51/296 (17%), Positives = 85/296 (28%), Gaps = 50/296 (16%)

Query: 62  CQWERVSCNNTMGRVVVLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEG 121
           C    V C++     V  DL                        LDL++N I    + + 
Sbjct: 10  CHLRVVQCSDLGLEKVPKDLPPD------------------TALLDLQNNKITEIKDGD- 50

Query: 122 LERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLE 181
                 L NL  L L+ N  +     + A L  L  L LS N+LK  +  K   +L++L 
Sbjct: 51  ---FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELR 106

Query: 182 KLNIGRNMIDKFV-------------------VSKGPKRLSRLNNLKVFDLSGNLFNNSI 222
                   + K V                             +  L    ++        
Sbjct: 107 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP 166

Query: 223 LSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKL 282
                   SL  L L  N++           L+NL +L +S+N I   +       L   
Sbjct: 167 QGL---PPSLTELHLDGNKITKVDA-ASLKGLNNLAKLGLSFNSISAVD----NGSLANT 218

Query: 283 SYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKEL 338
            +L  L +      K+   +     +  + L  NN +   +       +       
Sbjct: 219 PHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASY 274

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.3 bits (116), Expect = 1e-06
 Identities = 23/87 (26%), Positives = 35/87 (40%)

Query: 903 VPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSY 962
           +P   + LDL  N++         NL  + TL L +N ++   P  F+ L  +E L LS 
Sbjct: 29  LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 963 NKLSWKIPYQLVELNTLAVFSVAYNNL 989
           N+L          L  L V       +
Sbjct: 89  NQLKELPEKMPKTLQELRVHENEITKV 115

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.8 bits (94), Expect = 6e-04
 Identities = 49/269 (18%), Positives = 93/269 (34%), Gaps = 19/269 (7%)

Query: 255 SNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLS 314
            +   LD+  N+I   +       L+ L  L L+   I        +      L  L LS
Sbjct: 31  PDTALLDLQNNKITEIK-DGDFKNLKNLHTLILINNKIS--KISPGAFAPLVKLERLYLS 87

Query: 315 YNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSN 374
            N   E            K+L+EL + +  I   T   + +   +  +  + L  + +  
Sbjct: 88  KNQLKELPEK------MPKTLQELRVHENEI---TKVRKSVFNGLNQMIVVELGTNPL-K 137

Query: 375 NSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIH 434
           +S   +     +  L  + +AD ++  ++P  L    SL  L +  N++    ++S L  
Sbjct: 138 SSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAAS-LKG 193

Query: 435 LTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTT-PNFQLQSL 493
           L ++  L LS N      +   L N   L+     NN++                 L + 
Sbjct: 194 LNNLAKLGLSFNSISAVDN-GSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN 252

Query: 494 LLSSGYRDGITFPKFLYNQHDLEYVRLSH 522
            +S+   +    P +   +     V L  
Sbjct: 253 NISAIGSNDFCPPGYNTKKASYSGVSLFS 281

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.9 bits (203), Expect = 9e-18
 Identities = 48/259 (18%), Positives = 79/259 (30%), Gaps = 4/259 (1%)

Query: 584 DILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLAL 643
            I +      +  N +     +SF     L  L L +N L            +  +    
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 644 SNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRW 703
            N  L     +    L  L  L L+        P      ++LQ L+L +N+L       
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148

Query: 704 LGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLS 763
             +L  L H+ +  N I       F  L  L  L +  N ++   P  +  +        
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 764 KNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQ 823
                  L          L  L L+ N    +   R    + L     + + +   +P  
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQ- 266

Query: 824 LCRLNQLQLLDLSNNNLHG 842
             RL    L  L+ N+L G
Sbjct: 267 --RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.1 bits (167), Expect = 4e-13
 Identities = 52/293 (17%), Positives = 82/293 (27%), Gaps = 36/293 (12%)

Query: 675 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRIL 734
            +P  +   ++ Q +FL  N +S            L  + +  N +       F  L +L
Sbjct: 25  AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 735 QILDISDNNISGSLPSCYDFVCIEQVHLS-KNMLHGQLKEGTFFNCLTLMILDLSYNHLN 793
           + LD+SDN    S+             L        +L  G F     L  L L  N L 
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 794 GNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTL 853
               D    L  L++L L  N +          L+ L  L L  N +    P  F +   
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD--- 199

Query: 854 HERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLS 913
                                       + +         S   T        L  L L+
Sbjct: 200 --------------------------LGRLMTLYLFANNLSALPTEALAPLRALQYLRLN 233

Query: 914 CNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 966
            N  +            +Q    S + +   +P     L   +   L+ N L 
Sbjct: 234 DNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLP---QRLAGRDLKRLAANDLQ 282

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (132), Expect = 1e-08
 Identities = 54/264 (20%), Positives = 83/264 (31%), Gaps = 28/264 (10%)

Query: 602 SIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTN 661
           ++P         Q + L  N+++          C +L  L L +N L     +    L  
Sbjct: 25  AVPVGIPAA--SQRIFLHGNRISHVPAASFR-ACRNLTILWLHSNVLARIDAAAFTGLAL 81

Query: 662 LIWLQLEGNHFVGEI-PQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHI 720
           L  L L  N  +  + P +      L  L L    L    P     L  L+++ +  N +
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141

Query: 721 EGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCL 780
           +      F  L  L  L +  N IS                         + E  F    
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISS------------------------VPERAFRGLH 177

Query: 781 TLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNL 840
           +L  L L  N +    P     L +L  L L  NNL       L  L  LQ L L++N  
Sbjct: 178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

Query: 841 HGHIPSCFDNTTLHERYNNGSSLQ 864
                +      L +   + S + 
Sbjct: 238 VCDCRARPLWAWLQKFRGSSSEVP 261

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (127), Expect = 4e-08
 Identities = 37/214 (17%), Positives = 65/214 (30%), Gaps = 4/214 (1%)

Query: 806  LSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQP 865
               + L  N +             L +L L +N L     + F    L E+ +       
Sbjct: 34   SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS---DN 90

Query: 866  FETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQI 925
             +   V         +   L       + +       + +L     L  N L        
Sbjct: 91   AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL-YLQDNALQALPDDTF 149

Query: 926  GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA 985
             +L  +  L L  N ++      F  L +++ L L  N+++   P+   +L  L    + 
Sbjct: 150  RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 986  YNNLSGKIPERAAQFATFNESSYEGNPFLCGPPL 1019
             NNLS    E  A            NP++C    
Sbjct: 210  ANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 4e-04
 Identities = 44/251 (17%), Positives = 83/251 (33%), Gaps = 16/251 (6%)

Query: 206 NNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYN 265
              +   L GN  ++   +S     +L  L L+ N L               +       
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 266 EIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTT 325
           ++ + + P    GL +L  LHL R G+++            +L  L L  N        T
Sbjct: 92  QLRSVD-PATFHGLGRLHTLHLDRCGLQELGP--GLFRGLAALQYLYLQDNALQALPDDT 148

Query: 326 TQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCP 385
              F    +L  L++   RI+       +   +   +  L       +  +         
Sbjct: 149 ---FRDLGNLTHLFLHGNRIS------SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199

Query: 386 LVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSD 445
           L  L  L++  N+L       LA + +L+ L ++ N  +    + PL     ++    S 
Sbjct: 200 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL--WAWLQKFRGSS 257

Query: 446 NHF--QIPISL 454
           +     +P  L
Sbjct: 258 SEVPCSLPQRL 268

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 5e-04
 Identities = 53/298 (17%), Positives = 90/298 (30%), Gaps = 47/298 (15%)

Query: 129 SNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRN 188
           +  + + L GN  ++   +S     +LT L L +N L               +       
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 189 MIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDV 248
            +        P     L  L    L               L++L+ L L DN L+   D 
Sbjct: 92  QLRSVD----PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD- 146

Query: 249 KEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSL 308
             F  L NL  L +  N I +                              ++     SL
Sbjct: 147 DTFRDLGNLTHLFLHGNRISSVPE---------------------------RAFRGLHSL 179

Query: 309 NTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLS 368
           + L L  N               F+ L  L          ++        + ++QYL L 
Sbjct: 180 DRLLLHQNRVAHVHPHA------FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL- 232

Query: 369 NSSVSNNSRTLDQGLCPLV-HLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIG 425
               ++N    D    PL   LQ+   + +++  SLP     +    +  +++N L G
Sbjct: 233 ----NDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLP---QRLAGRDLKRLAANDLQG 283

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 82.5 bits (202), Expect = 2e-17
 Identities = 52/292 (17%), Positives = 103/292 (35%), Gaps = 34/292 (11%)

Query: 734  LQILDISDNNISGSLP---SCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYN 790
            +  LD+S  N+    P   S  +   +  +++                   L  L +++ 
Sbjct: 52   VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 791  HLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN 850
            +++G IPD +  +  L  L  ++N L G +P  +  L  L  +    N + G IP  + +
Sbjct: 112  NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 851  TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGL 910
             +        S  +           +++          +     +  + +          
Sbjct: 172  FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQ------K 225

Query: 911  DLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIP 970
                   +     ++G    +  L+L +N + G +P   + L+ + SL++S         
Sbjct: 226  IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS--------- 276

Query: 971  YQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPIC 1022
                           +NNL G+IP+       F+ S+Y  N  LCG PLP C
Sbjct: 277  ---------------FNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 79.8 bits (195), Expect = 1e-16
 Identities = 54/287 (18%), Positives = 94/287 (32%), Gaps = 32/287 (11%)

Query: 681 SKCSSLQGLFLSNNSLSGK--IPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILD 738
           ++   +  L LS  +L     IP  L NL  L  + +   +                   
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN------------------- 87

Query: 739 ISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPD 798
              N +    P+      +  ++++   + G           TL+ LD SYN L+G +P 
Sbjct: 88  ---NLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPP 143

Query: 799 RVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYN 858
            +  L  L  +    N + G +P      ++L      + N                  +
Sbjct: 144 SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVD 203

Query: 859 NGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLI 918
                            +     K   +             +  +   L+GLDL  NR+ 
Sbjct: 204 LS------RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY 257

Query: 919 GHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKL 965
           G +P  +  L  + +LN+S NNL G IP    NL+  +    + NK 
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 65.9 bits (159), Expect = 6e-12
 Identities = 39/266 (14%), Positives = 74/266 (27%), Gaps = 14/266 (5%)

Query: 386 LVHLQELHMADNDLRG--SLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLIL 443
              +  L ++  +L     +P  LAN+  L  L +     +       +  LT +  L +
Sbjct: 49  TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI 108

Query: 444 SDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTP-NFQLQSLLLSSGYRDG 502
           +  +    I        + + +  + N           SL            +S    D 
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168

Query: 503 ITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHK 562
                 L+    +   RL+           L   +                    +    
Sbjct: 169 YGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNM---------LEGDASVLFGS 219

Query: 563 QLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQ 622
                 +          L    +   L   ++  N + G++P     + FL  L++S N 
Sbjct: 220 DKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279

Query: 623 LTGEIPEHLAMGCVSLRSLALSNNNL 648
           L GEIP+            A +NN  
Sbjct: 280 LCGEIPQ--GGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 60.1 bits (144), Expect = 4e-10
 Identities = 55/250 (22%), Positives = 88/250 (35%), Gaps = 50/250 (20%)

Query: 654 SRNFNLTNLIWLQLEGNHFVG--EIPQSLSKCSSLQGLFLSNN-SLSGKIPRWLGNLTVL 710
             +     +  L L G +      IP SL+    L  L++    +L G IP  +  LT L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 711 RHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSC-YDFVCIEQVHLSKNMLHG 769
            ++ +   ++ G IP    Q++ L  LD S N +SG+LP        +  +    N + G
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 770 QLKEGTFFNCLTLMILDLSYNHLNGNIP-------------------------------- 797
            + +           + +S N L G IP                                
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 798 --------------DRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGH 843
                          +V     L+ L L +N + G +P  L +L  L  L++S NNL G 
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283

Query: 844 IPSCFDNTTL 853
           IP   +    
Sbjct: 284 IPQGGNLQRF 293

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 57.1 bits (136), Expect = 4e-09
 Identities = 63/271 (23%), Positives = 98/271 (36%), Gaps = 25/271 (9%)

Query: 482 SLTTPNFQLQSLLLSSGYRDG-ITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKL 540
              T  +++ +L LS          P  L N   L ++ +  I          +   T+L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 541 RQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALD 600
             L + + ++ G     +   K L  LD S N   G +P  I  +   L       N + 
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL-PNLVGITFDGNRIS 162

Query: 601 GSIPSSFGNMNFLQF-LDLSNNQLTGEIPEHLAMGCVSLRS------------------- 640
           G+IP S+G+ + L   + +S N+LTG+IP   A   ++                      
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222

Query: 641 --LALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSG 698
                   N       +     NL  L L  N   G +PQ L++   L  L +S N+L G
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282

Query: 699 KIPRWLGNLTVLRHIIMPKNHIEGPIPLEFC 729
           +IP+  GNL          N      PL  C
Sbjct: 283 EIPQ-GGNLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 43.6 bits (101), Expect = 8e-05
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 207 NLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYN 265
           NL   DL  N    ++   L +L  L SL +  N L G I   +  +L   +    + N
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI--PQGGNLQRFDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 42.8 bits (99), Expect = 1e-04
 Identities = 44/278 (15%), Positives = 88/278 (31%), Gaps = 15/278 (5%)

Query: 303 GSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSI 362
                +N LDLS  N  +             +L  L      I    + +  I  ++  +
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPI----PSSLANLPYLNFL--YIGGINNLVGPIPPAIAKL 100

Query: 363 QYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQ 422
             L     + +N S  +   L  +  L  L  + N L G+LP  ++++ +L  +    N+
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160

Query: 423 LIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHS 482
           + G+I  S          + +S N     I       +           E +A ++    
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSD 220

Query: 483 LTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQ 542
             T    L                  +    +L  + L + ++    P   L     L  
Sbjct: 221 KNTQKIHLA-------KNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG-LTQLKFLHS 272

Query: 543 LSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPL 580
           L++  ++L G       + ++  +   + N      PL
Sbjct: 273 LNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPL 309

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 42.8 bits (99), Expect = 1e-04
 Identities = 66/399 (16%), Positives = 111/399 (27%), Gaps = 100/399 (25%)

Query: 27  CLNHERFALLQLKLFFIDPYNYLLDWVDDEGATDCCQ--WERVSCNNTMGRVVVLDLSQT 84
           C   ++ ALLQ+K    +P   L  W+     TDCC   W  V C+       V      
Sbjct: 3   CNPQDKQALLQIKKDLGNPTT-LSSWLPT---TDCCNRTWLGVLCDTDTQTYRV------ 52

Query: 85  HRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNS 144
                               +LDL   ++                               
Sbjct: 53  -------------------NNLDLSGLNLPK--------------------------PYP 67

Query: 145 ILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSR 204
           I SSLA L  L  L +             +  L  L  L I    +   +     +    
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI--- 124

Query: 205 LNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSY 264
              L   D S N  + ++  S++ L +L  +    NR+ G+I             + +S 
Sbjct: 125 -KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183

Query: 265 NEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTT 324
           N +     P                                           N      +
Sbjct: 184 NRLTGKIPPTFA--------------------------------------NLNLAFVDLS 205

Query: 325 TTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLC 384
                     L     +  +I L  + L      +   + L+  +   +    TL QGL 
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT 265

Query: 385 PLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQL 423
            L  L  L+++ N+L G +P    N+    +   ++N+ 
Sbjct: 266 QLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 38.6 bits (88), Expect = 0.003
 Identities = 27/149 (18%), Positives = 42/149 (28%), Gaps = 11/149 (7%)

Query: 23  WSEGCLNHERFALLQLKLFFIDPYNYLLDWVDDEGATDCCQWERVSCNNTMGRVVVLDL- 81
              G +     +  +L        N L   +    A     +  +S N   G   VL   
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGS 219

Query: 82  -----SQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNL 136
                           +       + L  LDLR+N I G +       L++L  L  LN+
Sbjct: 220 DKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG----LTQLKFLHSLNV 275

Query: 137 VGNLFNNSILSSLARLSSLTSLDLSANRL 165
             N     I      L        + N+ 
Sbjct: 276 SFNNLCGEI-PQGGNLQRFDVSAYANNKC 303

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.4 bits (157), Expect = 2e-11
 Identities = 52/446 (11%), Positives = 105/446 (23%), Gaps = 17/446 (3%)

Query: 564 LRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDG----SIPSSFGNMNFLQFLDLS 619
           ++ LD+           E+  +L +  V  +    L       I S+      L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 620 NNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQS 679
           +N+L       +  G +   S  +   +L+    +          L+         +  +
Sbjct: 64  SNELGDVGVHCVLQG-LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 680 LSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDI 739
           L   + LQ L         ++ +       L                +F +L +      
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 740 SDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDR 799
                            +E + L    +             +   L       N      
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 800 VDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNN 859
           +  L        +           +       L  +          S   N    E    
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 860 GSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIG 919
                      +    +          S   +  +          S     D        
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE--- 359

Query: 920 HIPPQIGNLTKIQTLNLSHNNL----AGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVE 975
                    + ++ L L+  ++       + +T     ++  LDLS N L      QLVE
Sbjct: 360 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 419

Query: 976 -----LNTLAVFSVAYNNLSGKIPER 996
                   L    +     S ++ +R
Sbjct: 420 SVRQPGCLLEQLVLYDIYWSEEMEDR 445

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.6 bits (155), Expect = 3e-11
 Identities = 50/461 (10%), Positives = 117/461 (25%), Gaps = 25/461 (5%)

Query: 256 NLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRD--GSKLLQSMGSFPSLNTLDL 313
           +++ LD+   E+ +    +    L++   + L   G+ +     +  ++   P+L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 314 SYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVS 373
             N   +             S K   +      L  +   ++  ++ ++  L   + S +
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 374 NNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLI 433
                  Q LC  +   +  +    L        +      +L    +    ++S++ + 
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 434 HLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSL 493
                       +      +L+                 + ++          N      
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 494 LLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGP 553
           +            +          +                         + + D     
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 554 FRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSI---------P 604
               +            K+             +     F + +   +  +          
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 362

Query: 605 SSFGNMNFLQFLDLSNNQLTGEIPEHLAMG---CVSLRSLALSNNNLEGHMFSR-----N 656
                 + L+ L L++  ++      LA       SLR L LSNN L      +      
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 422

Query: 657 FNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLS 697
                L  L L   ++  E+         LQ L     SL 
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMED------RLQALEKDKPSLR 457

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (128), Expect = 5e-08
 Identities = 57/449 (12%), Positives = 120/449 (26%), Gaps = 21/449 (4%)

Query: 412 SLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQ---IPISLEPLFNHSRLKIFDA 468
            ++ LD+   +L  +  +  L  L   + + L D              L  +  L   + 
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 469 ENNEINAEIIES--HSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMN 526
            +NE+    +      L TP+ ++Q L L +    G            L  ++  H+  N
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 527 EEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDIL 586
                 L      L       + L   +     +  +     +        + +   DI 
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI- 181

Query: 587 SRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNN 646
                    +  L   +  S   +  L+                +     SLR LAL +N
Sbjct: 182 -----NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 236

Query: 647 NLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGN 706
            L     +           +L           +       + L    +     +      
Sbjct: 237 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 296

Query: 707 LTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNM 766
               R +          +   + +         S  +   +       + I      ++ 
Sbjct: 297 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR-LEDA 355

Query: 767 LHGQLKEGTFFNCLTLMILDLSYNHLNGN----IPDRVDGLSQLSYLILAHNNLEGEVPI 822
              +L +G       L +L L+   ++ +    +   +     L  L L++N L     +
Sbjct: 356 GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGIL 415

Query: 823 QLCR-----LNQLQLLDLSNNNLHGHIPS 846
           QL          L+ L L +      +  
Sbjct: 416 QLVESVRQPGCLLEQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 3e-06
 Identities = 44/476 (9%), Positives = 111/476 (23%), Gaps = 42/476 (8%)

Query: 514 DLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSL----VGPFRLPIHSHKQLRLLDV 569
           D++ + +   ++++     LL    + + + L +  L           +  +  L  L++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 570 SKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPE 629
             N         +   L   +     ++  +  +  +   +       L   Q       
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 630 HLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGL 689
            L    + L    L +           +   +    +   +    +        S+    
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 690 FLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLP 749
                 L   +      L  L+                    +         +N  G + 
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 750 SCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYL 809
                  +         L       T   C  L  +  +   L        +   + +  
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR- 301

Query: 810 ILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETS 869
                                             +       +L  +  + ++      S
Sbjct: 302 ----------------------------LLCETLLEPGCQLESLWVKSCSFTAACCSHFS 333

Query: 870 FVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRL----IGHIPPQI 925
            V+     +   +      +           G+  S+L  L L+   +       +   +
Sbjct: 334 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATL 393

Query: 926 GNLTKIQTLNLSHNNLAGPIPSTFS-----NLRNIESLDLSYNKLSWKIPYQLVEL 976
                ++ L+LS+N L                  +E L L     S ++  +L  L
Sbjct: 394 LANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 1e-05
 Identities = 12/91 (13%), Positives = 29/91 (31%)

Query: 154 SLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDL 213
            + SLD+    L  +   + L  L+  + + +    + +         L     L   +L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 214 SGNLFNNSILSSLARLSSLRSLLLYDNRLEG 244
             N   +  +  + +     S  +    L+ 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 4e-05
 Identities = 55/462 (11%), Positives = 111/462 (24%), Gaps = 30/462 (6%)

Query: 361 SIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRG----SLPWCLANMTSLRIL 416
            IQ L +    +S+      + L  L   Q + + D  L       +   L    +L  L
Sbjct: 3   DIQSLDIQCEELSDAR--WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 417 DVSSNQL----IGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNE 472
           ++ SN+L    +  +          I+ L L +                 L      +  
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120

Query: 473 INAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNW 532
            N        L                         L               +    P++
Sbjct: 121 DNLLGDAGLQLLCEGLLDP---------QCRLEKLQLEYCSLSAASCEPLASVLRAKPDF 171

Query: 533 LLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVF 592
                +           L    +      + L+L      +        I    + L   
Sbjct: 172 KELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLREL 231

Query: 593 NISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHM 652
            +  N L     +            L    +          G +     A  +       
Sbjct: 232 ALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLA 291

Query: 653 FSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRH 712
            +   +    +  +             +  CS         +S+  +    L        
Sbjct: 292 GNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR 351

Query: 713 IIMPKNHIEGPIPLEFCQLRILQILDISDNNISG----SLPSCY-DFVCIEQVHLSKNML 767
           +             +   +  L++L ++D ++S     SL +       + ++ LS N L
Sbjct: 352 LEDAGVRELCQGLGQPGSV--LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 409

Query: 768 HGQ----LKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQ 805
                  L E        L  L L   + +  + DR+  L +
Sbjct: 410 GDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 9e-05
 Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 6/82 (7%)

Query: 207 NLKVFDLSGNLFNNSILSSLA-RLSSLRSLLLYDNRLEGSIDVKE----FDSLSNLEELD 261
           +++  D+     +++  + L   L   + + L D  L      K+          L EL+
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL-TEARCKDISSALRVNPALAELN 61

Query: 262 MSYNEIDNFEVPQACSGLRKLS 283
           +  NE+ +  V     GL+  S
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPS 83

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 2e-04
 Identities = 61/460 (13%), Positives = 128/460 (27%), Gaps = 21/460 (4%)

Query: 103 LESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNN----SILSSLARLSSLTSL 158
           ++SLD++  +++   +    E L  L   +++ L            I S+L    +L  L
Sbjct: 4   IQSLDIQCEELS---DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 159 DLSANRLKGSIDIKELDSLRD----LEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLS 214
           +L +N L        L  L+     ++KL++    +           L  L  L+   LS
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120

Query: 215 GNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQ 274
            NL  ++ L  L          L   +LE                      +        
Sbjct: 121 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 180

Query: 275 ACSGLRKLSYLHLLRVGIRDG--SKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHF 332
                 ++    L     +          + S    +   +  +  +             
Sbjct: 181 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 240

Query: 333 KSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQEL 392
             + EL       +     L I    + +     L     +  S          +  +  
Sbjct: 241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 300

Query: 393 HMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPI 452
            +    L        +          +      S+ +     L         ++     +
Sbjct: 301 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 360

Query: 453 SLEPLFNHSRLKIFDAENNEINAEIIES-HSLTTPNFQLQSLLLSS---GYRDGITFPKF 508
                   S L++    + +++     S  +    N  L+ L LS+   G    +   + 
Sbjct: 361 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 420

Query: 509 LYNQH-DLEYVRLSHIKMNEEFPNWL---LENNTKLRQLS 544
           +      LE + L  I  +EE  + L    ++   LR +S
Sbjct: 421 VRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 8e-04
 Identities = 25/129 (19%), Positives = 41/129 (31%), Gaps = 9/129 (6%)

Query: 61  CCQWERVSCNNTMGRVVVLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVENE 120
           C  +  V   N     + +  ++        L   L  P   L  L L D D++    + 
Sbjct: 329 CSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSS 388

Query: 121 GLERLSRLSNLKMLNLVGNLFNNSILSSLAR-----LSSLTSLDLSANRLKGSIDIKELD 175
               L    +L+ L+L  N   ++ +  L          L  L L        +     D
Sbjct: 389 LAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEM----ED 444

Query: 176 SLRDLEKLN 184
            L+ LEK  
Sbjct: 445 RLQALEKDK 453

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (137), Expect = 2e-09
 Identities = 35/182 (19%), Positives = 60/182 (32%), Gaps = 4/182 (2%)

Query: 660 TNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNH 719
            +   L L  N        +L   + L  L L    L+         L VL  + +  N 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHNQ 88

Query: 720 IEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNC 779
           ++    L      +  +    +   S  L +      +++++L  N     L  G     
Sbjct: 89  LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPT 147

Query: 780 LTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNN 839
             L  L L+ N+L       ++GL  L  L+L  N+L   +P      + L    L  N 
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP 206

Query: 840 LH 841
             
Sbjct: 207 WL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 3e-08
 Identities = 45/179 (25%), Positives = 61/179 (34%), Gaps = 5/179 (2%)

Query: 675 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRIL 734
            +P  L K      L LS N L       L   T L  + +  +  E         L +L
Sbjct: 24  ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL--DRAELTKLQVDGTLPVL 79

Query: 735 QILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNG 794
             LD+S N +            +  + +S N L   L  G       L  L L  N L  
Sbjct: 80  GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKT 138

Query: 795 NIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTL 853
             P  +    +L  L LA+NNL       L  L  L  L L  N+L+      F +  L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL 197

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (126), Expect = 5e-08
 Identities = 33/205 (16%), Positives = 65/205 (31%), Gaps = 8/205 (3%)

Query: 564 LRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQL 623
              ++  K N    +P ++       T+ ++S N L     ++      L  L+L   + 
Sbjct: 12  HLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE- 66

Query: 624 TGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKC 683
              + +    G + +      ++N    +      L  L  L +  N        +L   
Sbjct: 67  ---LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 684 SSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNN 743
             LQ L+L  N L    P  L     L  + +  N++          L  L  L + +N+
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183

Query: 744 ISGSLPSCYDFVCIEQVHLSKNMLH 768
           +       +    +    L  N   
Sbjct: 184 LYTIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 1e-06
 Identities = 36/212 (16%), Positives = 64/212 (30%), Gaps = 12/212 (5%)

Query: 778 NCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSN 837
              + + ++    +L   +P  +      + L L+ N L       L    +L  L+L  
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 838 NNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITY 897
             L                     +L         +  +        +    F   +   
Sbjct: 65  AELTKLQVDGT--------LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116

Query: 898 TYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIES 957
               R    L  L L  N L    P  +    K++ L+L++NNL        + L N+++
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT 176

Query: 958 LDLSYNKLSWKIPYQLVELNTLAVFSVAYNNL 989
           L L  N L   IP      + L    +  N  
Sbjct: 177 LLLQENSLYT-IPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 4e-04
 Identities = 43/188 (22%), Positives = 66/188 (35%), Gaps = 8/188 (4%)

Query: 556 LPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQF 615
           LP    K   +L +S+N         +    +RLT  N     LD +  +       L  
Sbjct: 25  LPPDLPKDTTILHLSENLLYTFSLATLMP-YTRLTQLN-----LDRAELTKLQVDGTLPV 78

Query: 616 LDLSNNQLTGEIPEHL-AMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVG 674
           L   +          L      +L  L +S N L          L  L  L L+GN    
Sbjct: 79  LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138

Query: 675 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRIL 734
             P  L+    L+ L L+NN+L+      L  L  L  +++ +N +   IP  F    +L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197

Query: 735 QILDISDN 742
               +  N
Sbjct: 198 PFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 27/174 (15%), Positives = 53/174 (30%), Gaps = 17/174 (9%)

Query: 129 SNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRN 188
            +  +L+L  NL     L++L   + LT L+L    L        L  L  L+  +    
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ 90

Query: 189 MIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNS---------------ILSSLARLSSLR 233
            +     +     +  ++  ++  L                       +   L   +   
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150

Query: 234 SLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHL 287
             L   N     +     + L NL+ L +  N    + +P+   G   L +  L
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQEN--SLYTIPKGFFGSHLLPFAFL 202

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.8 bits (138), Expect = 2e-09
 Identities = 44/291 (15%), Positives = 88/291 (30%), Gaps = 24/291 (8%)

Query: 567 LDVSKNNFQGHIPLEIGDILSR-LTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTG 625
           LD++  N     P   G +LS+ +  F    + +D  +   F     +Q +DLSN+ +  
Sbjct: 5   LDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEV 60

Query: 626 EIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSS 685
                +   C  L++L+L    L   + +     +NL+ L L G     E          
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS-- 118

Query: 686 LQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNIS 745
                 S          +      ++  +   +     + L   +          +   S
Sbjct: 119 ----SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR---------KNLQKS 165

Query: 746 GSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSY-NHLNGNIPDRVDGLS 804
                      +  + LS +++        FF    L  L LS    +       +  + 
Sbjct: 166 DLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP 225

Query: 805 QLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE 855
            L  L +     +G + +       L  L ++ ++          N    E
Sbjct: 226 TLKTLQVFGIVPDGTLQL---LKEALPHLQINCSHFTTIARPTIGNKKNQE 273

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 1e-07
 Identities = 30/235 (12%), Positives = 70/235 (29%), Gaps = 5/235 (2%)

Query: 212 DLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFE 271
           DL+G   +  +   L     + +     + ++  +   E  S   ++ +D+S + I+   
Sbjct: 6   DLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLA--EHFSPFRVQHMDLSNSVIEVST 62

Query: 272 VPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPH 331
           +    S   KL  L L  + + D   ++ ++    +L  L+LS  +        T     
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSD--PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 332 FKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQE 391
            +  +               + +   S    Q            S            +  
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180

Query: 392 LHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDN 446
                  L+         +  L+ L +S    I   +   L  + +++ L +   
Sbjct: 181 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 2e-05
 Identities = 36/241 (14%), Positives = 80/241 (33%), Gaps = 10/241 (4%)

Query: 732 RILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNH 791
           + +       + +   L   +    ++ + LS +++      G    C  L  L L    
Sbjct: 23  QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR 82

Query: 792 LNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQ-----LCRLNQLQLLDLSNNNLHGHIPS 846
           L+  I + +   S L  L L+  +   E  +Q       RL++L L    +        +
Sbjct: 83  LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA 142

Query: 847 CFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSL 906
               +    + N     +  + S +            +  S     K+  +    ++  L
Sbjct: 143 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL 202

Query: 907 LSGLDLS-CNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKL 965
              L LS C  +I     ++G +  ++TL +      G +      L +   L ++ +  
Sbjct: 203 QH-LSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPH---LQINCSHF 258

Query: 966 S 966
           +
Sbjct: 259 T 259

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 2e-05
 Identities = 39/314 (12%), Positives = 84/314 (26%), Gaps = 52/314 (16%)

Query: 616 LDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGE 675
           LDL+   L  ++   L      + +     + ++  +   +F+   +  + L  +     
Sbjct: 5   LDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS 61

Query: 676 -IPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRIL 734
            +   LS+CS LQ L L    LS  I   L   + L  + +                   
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS--------------- 106

Query: 735 QILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNG 794
              + +   +  S     +         ++  +   +   +       +         + 
Sbjct: 107 GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSD 166

Query: 795 NIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSN-NNLHGHIPSCFDNTTL 853
                    + +   +     L+ +   +  +LN LQ L LS   ++             
Sbjct: 167 LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI-- 224

Query: 854 HERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLS 913
                                     P  + L+ F              +   L  L ++
Sbjct: 225 --------------------------PTLKTLQVFGIVPDGTL----QLLKEALPHLQIN 254

Query: 914 CNRLIGHIPPQIGN 927
           C+       P IGN
Sbjct: 255 CSHFTTIARPTIGN 268

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 3e-05
 Identities = 46/265 (17%), Positives = 86/265 (32%), Gaps = 19/265 (7%)

Query: 156 TSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSG 215
            +LDL+   L         D    L    +      +  + +          ++  DLS 
Sbjct: 3   QTLDLTGKNLHP-------DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSN 55

Query: 216 NLFNNSILSS-LARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQ 274
           ++   S L   L++ S L++L L   RL   I V      SNL  L++S     +    Q
Sbjct: 56  SVIEVSTLHGILSQCSKLQNLSLEGLRLSDPI-VNTLAKNSNLVRLNLSGCSGFSEFALQ 114

Query: 275 A----CSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFP 330
                CS L +L+         +     +  +    +   L     N  ++  +T     
Sbjct: 115 TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC 174

Query: 331 HFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQ 390
                   ++D +   +  +        +  +Q+LSLS              L  +  L+
Sbjct: 175 PNLV----HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE--TLLELGEIPTLK 228

Query: 391 ELHMADNDLRGSLPWCLANMTSLRI 415
            L +      G+L      +  L+I
Sbjct: 229 TLQVFGIVPDGTLQLLKEALPHLQI 253

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 6e-05
 Identities = 31/241 (12%), Positives = 70/241 (29%), Gaps = 12/241 (4%)

Query: 518 VRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGH 577
           + L+   ++ +    LL       +                 S  +++ +D+S +  +  
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHF---SPFRVQHMDLSNSVIEVS 61

Query: 578 IPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDL-SNNQLTGEIPEHLAMGCV 636
               I    S+L   ++    L   I ++    + L  L+L   +  +    + L   C 
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 637 SLRSLALSNNNLEGHMFSRNFNLTNLIWLQ-------LEGNHFVGEIPQSLSKCSSLQGL 689
            L  L LS          +         +         +               + +   
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 690 FLSNNSLSGKIPRWLGNLTVLRHIIMPK-NHIEGPIPLEFCQLRILQILDISDNNISGSL 748
              +  L     +    L  L+H+ + +   I     LE  ++  L+ L +      G+L
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241

Query: 749 P 749
            
Sbjct: 242 Q 242

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 8e-04
 Identities = 36/231 (15%), Positives = 74/231 (32%), Gaps = 10/231 (4%)

Query: 489 QLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVND 548
            + +      + D      F  +   ++++ LS+  +     + +L   +KL+ LSL   
Sbjct: 24  GVIAFRCPRSFMDQPLAEHF--SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL 81

Query: 549 SLVGPFRLPIHSHKQLRLLDVSKN-NFQGHIPLEIGDILSRLTVFNI------SMNALDG 601
            L  P    +  +  L  L++S    F       +    SRL   N+      +   +  
Sbjct: 82  RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 141

Query: 602 SIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTN 661
           ++      +  L       N    ++   +      +      +  L+   F   F L  
Sbjct: 142 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY 201

Query: 662 LIWLQLEG-NHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLR 711
           L  L L      + E    L +  +L+ L +      G +      L  L+
Sbjct: 202 LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ 252

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 8e-04
 Identities = 52/258 (20%), Positives = 91/258 (35%), Gaps = 6/258 (2%)

Query: 102 QLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSS-LARLSSLTSLDL 160
           +L S  +          ++ L        ++ ++L  ++   S L   L++ S L +L L
Sbjct: 19  RLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 78

Query: 161 SANRLKGSIDIKELDSLRDLEKLNIGRNM-IDKFVVSKGPKRLSRL--NNLKVFDLSGNL 217
              RL   I +  L    +L +LN+       +F +       SRL   NL         
Sbjct: 79  EGLRLSDPI-VNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK 137

Query: 218 FNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACS 277
                ++ ++   +  +L  Y   L+ S          NL  LD+S + +   +  Q   
Sbjct: 138 HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 197

Query: 278 GLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKE 337
            L  L +L L R         L  +G  P+L TL +       T+    +  PH +    
Sbjct: 198 QLNYLQHLSLSRCYDIIPE-TLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCS 256

Query: 338 LYMDDARIALNTSFLQII 355
            +   AR  +     Q I
Sbjct: 257 HFTTIARPTIGNKKNQEI 274

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 9e-04
 Identities = 44/272 (16%), Positives = 92/272 (33%), Gaps = 18/272 (6%)

Query: 443 LSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDG 502
           L+  +   P     L +   +  F    + ++  + E  S      ++Q + LS+   + 
Sbjct: 7   LTGKNLH-PDVTGRLLSQG-VIAFRCPRSFMDQPLAEHFSPF----RVQHMDLSNSVIEV 60

Query: 503 ITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHK 562
            T    L     L+ + L  +++++   N  L  N+ L +L+L   S    F L      
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSS 119

Query: 563 QLRLLDVSKNNFQGHIPLEIGDILSR-------LTVFNISMNALDGSIPSSFGNMNFLQF 615
             RL +++ +         +   ++        L +     N     + +       L  
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 179

Query: 616 LDLSNNQLTGEIPEHLAMGCVSLRSLALSN-NNLEGHMFSRNFNLTNLIWLQLEGNHFVG 674
           LDLS++ +              L+ L+LS   ++          +  L  LQ+ G    G
Sbjct: 180 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDG 239

Query: 675 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGN 706
            +         LQ   ++ +  +      +GN
Sbjct: 240 TLQLLKEALPHLQ---INCSHFTTIARPTIGN 268

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.004
 Identities = 17/94 (18%), Positives = 38/94 (40%), Gaps = 1/94 (1%)

Query: 887 SFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNL-AGPI 945
           + D T K++     GR+ S            +     +  +  ++Q ++LS++ +    +
Sbjct: 4   TLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTL 63

Query: 946 PSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTL 979
               S    +++L L   +LS  I   L + + L
Sbjct: 64  HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNL 97

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.2 bits (121), Expect = 1e-07
 Identities = 31/193 (16%), Positives = 66/193 (34%), Gaps = 15/193 (7%)

Query: 778 NCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSN 837
                +  +L    +   +    + L+ +  +I  +++++    IQ   L  +  L L+ 
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLNG 77

Query: 838 NNLHGHIP---------SCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESF 888
           N L    P            D   + +  +     +    S    G  D++    + +  
Sbjct: 78  NKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 137

Query: 889 DFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPST 948
                +   T    +  L     LS           +  LTK+Q L LS N+++      
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD--LRA 195

Query: 949 FSNLRNIESLDLS 961
            + L+N++ L+L 
Sbjct: 196 LAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.5 bits (109), Expect = 4e-06
 Identities = 30/195 (15%), Positives = 68/195 (34%), Gaps = 22/195 (11%)

Query: 658 NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPK 717
                I   L+       + Q+  + +S+  +  +N+ +       +  L  +  + +  
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 77

Query: 718 NHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHG-------- 769
           N +    PL   +      LD +      SL        +   H   + ++G        
Sbjct: 78  NKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 137

Query: 770 -------QLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPI 822
                  ++ + T  + LT +      ++   +I   + GL++L  L L+ N++      
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD--LR 194

Query: 823 QLCRLNQLQLLDLSN 837
            L  L  L +L+L +
Sbjct: 195 ALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 4e-04
 Identities = 36/209 (17%), Positives = 68/209 (32%), Gaps = 33/209 (15%)

Query: 578 IPLEIGDI-----LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLA 632
           +P  I  I      +     N+   ++  ++  +   +N +  +  +N+ +         
Sbjct: 10  VPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQ-- 65

Query: 633 MGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWL------------------QLEGNHFVG 674
               ++  L L+ N L       N      ++L                   L   H   
Sbjct: 66  -YLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGI 124

Query: 675 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRIL 734
                L     L+ L+L NN ++         LT L  + +  N I   +P     L  L
Sbjct: 125 SDINGLVHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQISDIVP--LAGLTKL 180

Query: 735 QILDISDNNISGSLPSCYDFVCIEQVHLS 763
           Q L +S N+IS  L +      ++ + L 
Sbjct: 181 QNLYLSKNHIS-DLRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 8e-04
 Identities = 37/196 (18%), Positives = 70/196 (35%), Gaps = 19/196 (9%)

Query: 100 FQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLD 159
           F +    +L+   +   V        + L+++  +    +   +  +  +  L ++T L 
Sbjct: 23  FAETIKDNLKKKSVTDAVT------QNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLF 74

Query: 160 LSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNL--------KVF 211
           L+ N+L     +  L +L  L         +      K  K LS  +N          + 
Sbjct: 75  LNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLP 134

Query: 212 DLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFE 271
            L      N+ ++ +  LS L  L           D+     L+ L+ L +S N I +  
Sbjct: 135 QLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLR 194

Query: 272 VPQACSGLRKLSYLHL 287
              A +GL+ L  L L
Sbjct: 195 ---ALAGLKNLDVLEL 207

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.7 bits (122), Expect = 3e-07
 Identities = 53/319 (16%), Positives = 93/319 (29%), Gaps = 20/319 (6%)

Query: 683 CSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDN 742
                 L L+N  LS  +P    +L  L   +   N +   +P     L+ L + + +  
Sbjct: 37  DRQAHELELNNLGLS-SLPELPPHLESL---VASCNSLT-ELPELPQSLKSLLVDNNNLK 91

Query: 743 NISGSLPSCYDFVCIEQVHLSKNMLHG------QLKEGTFFNCLTLMILDLSYNHLNGNI 796
            +S   P                 L           +      L  +   L +     N 
Sbjct: 92  ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ 151

Query: 797 PDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHER 856
            + +  L  L +L   + +      +    L+   ++  +N              T    
Sbjct: 152 LEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYA 211

Query: 857 YNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNR 916
            NN     P     +    +  +    + E     T            S L       N 
Sbjct: 212 DNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA 271

Query: 917 LIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVEL 976
               I         ++ LN+S+N L   +P+    L   E L  S+N L+ ++P     L
Sbjct: 272 SSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRL---ERLIASFNHLA-EVPELPQNL 326

Query: 977 NTLAVFSVAYNNLSGKIPE 995
             L    V YN L  + P+
Sbjct: 327 KQL---HVEYNPLR-EFPD 341

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.0 bits (120), Expect = 4e-07
 Identities = 47/320 (14%), Positives = 95/320 (29%), Gaps = 22/320 (6%)

Query: 555 RLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQ 614
           RL     +Q   L+++           + ++   L     S N+L   +P    ++  L 
Sbjct: 31  RLRDCLDRQAHELELNNLGLS-----SLPELPPHLESLVASCNSLT-ELPELPQSLKSLL 84

Query: 615 FLDLSNNQLTGEIP----------EHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIW 664
             + +   L+   P          +   +  +   S     +     +        +L +
Sbjct: 85  VDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEF 144

Query: 665 LQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPI 724
           +    N              +      ++      +P  L ++    +I+     ++   
Sbjct: 145 IAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLP 204

Query: 725 PLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMI 784
            L         +  + D   S    +  D    +   L +++    + E  F     L  
Sbjct: 205 FLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPP 264

Query: 785 LDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHI 844
                N  +  I    D    L  L +++N L  E+P    R   L+ L  S N+L   +
Sbjct: 265 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHL-AEV 319

Query: 845 PSCFDN-TTLHERYNNGSSL 863
           P    N   LH  YN     
Sbjct: 320 PELPQNLKQLHVEYNPLREF 339

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.8 bits (104), Expect = 4e-05
 Identities = 52/307 (16%), Positives = 88/307 (28%), Gaps = 16/307 (5%)

Query: 347 LNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELH---MADNDLRGSL 403
           LN   L  + E  P ++ L  S     N+   L +    L  L   +    A +DL   L
Sbjct: 45  LNNLGLSSLPELPPHLESLVASC----NSLTELPELPQSLKSLLVDNNNLKALSDLPPLL 100

Query: 404 PWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRL 463
            +   +   L  L    N     I       L  + DL  S        +        + 
Sbjct: 101 EYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQN 160

Query: 464 KIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHI 523
             F       N  + +   L      + +          +    FL   +    +  +  
Sbjct: 161 LPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLP 220

Query: 524 KMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIG 583
            +        + +N       L            I S       ++   N   +    + 
Sbjct: 221 DLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLC 280

Query: 584 DILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLAL 643
           D+   L   N+S N L   +P+       L+ L  S N L  E+PE       +L+ L +
Sbjct: 281 DLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVPELPQ----NLKQLHV 331

Query: 644 SNNNLEG 650
             N L  
Sbjct: 332 EYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.4 bits (103), Expect = 5e-05
 Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 14/136 (10%)

Query: 510 YNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDV 569
            + +  +   L       +    +    ++L       ++     R        L  L+V
Sbjct: 232 RDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNV 291

Query: 570 SKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPE 629
           S N        E+  +  RL     S N L   +P    N   L+ L +  N L  E P+
Sbjct: 292 SNNKLI-----ELPALPPRLERLIASFNHL-AEVPELPQN---LKQLHVEYNPLR-EFPD 341

Query: 630 HLAMGCVSLRSLALSN 645
                  S+  L +++
Sbjct: 342 IPE----SVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.0 bits (102), Expect = 6e-05
 Identities = 56/335 (16%), Positives = 97/335 (28%), Gaps = 26/335 (7%)

Query: 384 CPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLIL 443
           C      EL + +  L  SLP    +   L  L  S N L   +   P     S++ L++
Sbjct: 35  CLDRQAHELELNNLGLS-SLPELPPH---LESLVASCNSL-TELPELP----QSLKSLLV 85

Query: 444 SDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGI 503
            +N+ +    L PL  +  +     E             +   N  L+ L       + I
Sbjct: 86  DNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFI 145

Query: 504 TFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQ 563
                   +            +  +  +     +  L   S+V  + +      + +   
Sbjct: 146 AAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPF 205

Query: 564 LRLLDVSKNNFQGHIPLEIG-------DILSRLTVFNISMNALDGSIPSSFGNMNFLQFL 616
           L  +    N  +    L          D                    + F  ++ L   
Sbjct: 206 LTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPN 265

Query: 617 DLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEI 676
               N  + EI         SL  L +SNN L             L  L    NH   E+
Sbjct: 266 LYYLNASSNEIRSLC-DLPPSLEELNVSNNKLI----ELPALPPRLERLIASFNHL-AEV 319

Query: 677 PQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLR 711
           P+      +L+ L +  N L  + P    ++  LR
Sbjct: 320 PELP---QNLKQLHVEYNPLR-EFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.0 bits (94), Expect = 6e-04
 Identities = 43/294 (14%), Positives = 84/294 (28%), Gaps = 17/294 (5%)

Query: 587 SRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLA------MGCVSLRS 640
            +     ++   L  S+P    +   L+ L  S N LT E+PE         +   +L++
Sbjct: 38  RQAHELELNNLGL-SSLPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKA 92

Query: 641 LALSNNNLEGHMFSRNFNLTNLIWLQL----EGNHFVGEIPQSLSKCSSLQGLFLSNNSL 696
           L+     LE    S N                 +     + +      SL+ +   NN L
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 697 SGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVC 756
                          +           +PL    +     +      +         +  
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 757 IEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNL 816
              +    ++           N LT +              +   GLS+L   +   N  
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 817 EGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN-TTLHERYNNGSSLQPFETS 869
             E+         L+ L++SNN L   +P+       L   +N+ + +     +
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLIASFNHLAEVPELPQN 325

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.6 bits (117), Expect = 6e-07
 Identities = 33/217 (15%), Positives = 68/217 (31%), Gaps = 8/217 (3%)

Query: 229 LSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLL 288
           L++   +    + +  ++   +   L  +  L      +   E  Q  + L  L      
Sbjct: 18  LANAIKIAAGKSNVTDTVTQAD---LDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQ 74

Query: 289 RVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALN 348
              +     L +      S N L             T        +        + + + 
Sbjct: 75  ITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL 134

Query: 349 TSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLA 408
              L  I    P     +L   S+ N   +    L  L  L  L   DN +    P  LA
Sbjct: 135 YLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LA 192

Query: 409 NMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSD 445
           ++ +L  + + +NQ+       PL + +++  + L++
Sbjct: 193 SLPNLIEVHLKNNQISDVS---PLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.7 bits (112), Expect = 2e-06
 Identities = 29/238 (12%), Positives = 75/238 (31%), Gaps = 27/238 (11%)

Query: 408 ANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFD 467
             + +   +    + +  +++ +    L  I  L           ++E +   + L   +
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVT---TIEGVQYLNNLIGLE 69

Query: 468 AENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNE 527
            ++N+I       +           L   +         K +     L+ ++   +   +
Sbjct: 70  LKDNQITDLAPLKN-----------LTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQ 118

Query: 528 EFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILS 587
                 L   + L+ L L  + +     L   ++ Q   +  ++ +    +         
Sbjct: 119 ITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLS----- 173

Query: 588 RLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSN 645
           +LT      N +    P    ++  L  + L NNQ++   P        +L  + L+N
Sbjct: 174 KLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLA---NTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 9e-05
 Identities = 32/253 (12%), Positives = 76/253 (30%), Gaps = 36/253 (14%)

Query: 170 DIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARL 229
            I    +L +  K+  G++ +   V        + L+ +      G              
Sbjct: 11  VIFPDPALANAIKIAAGKSNVTDTVT------QADLDGITTLSAFGTGVT---------- 54

Query: 230 SSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLR 289
                             ++    L+NL  L++  N+I +    +  + + +L       
Sbjct: 55  -----------------TIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPL 97

Query: 290 VGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNT 349
             +   + L        +   +         +         +  +          +   +
Sbjct: 98  KNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLS 157

Query: 350 SFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLAN 409
                + +  P      L+     +N  +    L  L +L E+H+ +N +    P  LAN
Sbjct: 158 IGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP--LAN 215

Query: 410 MTSLRILDVSSNQ 422
            ++L I+ + +NQ
Sbjct: 216 TSNLFIVTL-TNQ 227

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 27/198 (13%), Positives = 62/198 (31%), Gaps = 15/198 (7%)

Query: 782 LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH 841
            + +    +++   +      L  ++ L      +     +Q   LN L  L+L +N + 
Sbjct: 21  AIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTIEGVQ--YLNNLIGLELKDNQIT 76

Query: 842 GHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQG 901
              P            +          + +           QI +       S       
Sbjct: 77  DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYL 136

Query: 902 RVPSLLSGLDLSCNRLIGHI---------PPQIGNLTKIQTLNLSHNNLAGPIPSTFSNL 952
            +  + +   L+    + ++            + NL+K+ TL    N ++   P   ++L
Sbjct: 137 DLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASL 194

Query: 953 RNIESLDLSYNKLSWKIP 970
            N+  + L  N++S   P
Sbjct: 195 PNLIEVHLKNNQISDVSP 212

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 29/210 (13%), Positives = 61/210 (29%), Gaps = 18/210 (8%)

Query: 761 HLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEV 820
              K+ +   +   T  +   +  L      +   I   V  L+ L  L L  N +    
Sbjct: 25  AAGKSNVTDTV---TQADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKDNQITDLA 79

Query: 821 PIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDP 880
           P++         L  +       I       TL       + + P      +        
Sbjct: 80  PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN 139

Query: 881 KKQILESFDFTTKSITYTYQGRVPSL---------LSGLDLSCNRLIGHIPPQIGNLTKI 931
           +   +      T     +      S          L+ L    N++    P  + +L  +
Sbjct: 140 QITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNL 197

Query: 932 QTLNLSHNNLAGPIPSTFSNLRNIESLDLS 961
             ++L +N ++   P   +N  N+  + L+
Sbjct: 198 IEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 7e-04
 Identities = 33/219 (15%), Positives = 76/219 (34%), Gaps = 14/219 (6%)

Query: 128 LSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGR 187
           L+N   +    +   +++  + A L  +T+L      +     I+ +  L +L  L +  
Sbjct: 18  LANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELKD 72

Query: 188 NMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSID 247
           N I      K   +++ L        + +            L+S +   +       ++ 
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 248 V--KEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKL--LQSMG 303
           V   + + ++N+  L    N           S L  L+ L  L     D +K+  +  + 
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLA 192

Query: 304 SFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDD 342
           S P+L  + L  N  ++          +  +L  + + +
Sbjct: 193 SLPNLIEVHLKNNQISD-----VSPLANTSNLFIVTLTN 226

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 8e-07
 Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 8/138 (5%)

Query: 605 SSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIW 664
           + + N    + LDL   ++   + E+L        ++  S+N +          L  L  
Sbjct: 12  AQYTNAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKT 67

Query: 665 LQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSG----KIPRWLGNLTVLRHIIMPKNHI 720
           L +  N               L  L L+NNSL           L +LT L  +  P  + 
Sbjct: 68  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 127

Query: 721 EGPIPLEFCQLRILQILD 738
           +        ++  +++LD
Sbjct: 128 KHYRLYVIYKVPQVRVLD 145

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 6e-05
 Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 923 PQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSW 967
            Q  N  + + L+L    +   I +  + L   +++D S N++  
Sbjct: 12  AQYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRK 55

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 49.1 bits (115), Expect = 2e-06
 Identities = 38/304 (12%), Positives = 80/304 (26%), Gaps = 22/304 (7%)

Query: 675 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLG-------NLTVLRHIIMPKNHIEGPIPLE 727
            +   L +  S++ + LS N++  +  RWL        +L +     +    ++  IP  
Sbjct: 22  SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEA 81

Query: 728 FCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDL 787
              L    +     + +  S  +         +         +                +
Sbjct: 82  LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI 141

Query: 788 SYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSC 847
           +       +  +      L  +I   N LE     +  +  Q      S+  LH      
Sbjct: 142 ARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ------SHRLLHTVKMVQ 195

Query: 848 FDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLL 907
                    +     L   +   V+    +                       G    LL
Sbjct: 196 NGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL 255

Query: 908 SGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPST-----FSNLRNIESLDLSY 962
           S        ++            +QTL L +N +      T        + ++  L+L+ 
Sbjct: 256 S--ARGAAAVVDAFS--KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 311

Query: 963 NKLS 966
           N+ S
Sbjct: 312 NRFS 315

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.0 bits (94), Expect = 6e-04
 Identities = 39/331 (11%), Positives = 94/331 (28%), Gaps = 34/331 (10%)

Query: 562 KQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDG----SIPSSFGNMNFLQFLD 617
           K L+L  ++  + +    + +      +    +S N +       +  +  +   L+  +
Sbjct: 8   KSLKLDAITTEDEKSVFAVLLE--DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAE 65

Query: 618 LSNNQLTGEIPEHLAMGCVSLRSLALSNNNLE---GHMFSRNFNLTNLIWLQLEGNHFVG 674
            S+      + + +      L    L    L        +        +   L  +  + 
Sbjct: 66  FSDIFTG-RVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 124

Query: 675 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQ---- 730
            +    +      G  ++       + +   N   LR II  +N +E     E+ +    
Sbjct: 125 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 184

Query: 731 ---------LRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLT 781
                    ++     +  ++ +   L  C +   ++    +   L          +   
Sbjct: 185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 244

Query: 782 LMILDLSYNHLNGNIPDRV------DGLSQLSYLILAHNNLEGEVPIQLC-----RLNQL 830
           L  L L+   L+      V           L  L L +N +E +    L      ++  L
Sbjct: 245 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 304

Query: 831 QLLDLSNNNLHGHIPSCFDNTTLHERYNNGS 861
             L+L+ N          +   +      G 
Sbjct: 305 LFLELNGNRFSEEDDVVDEIREVFSTRGRGE 335

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.3 bits (87), Expect = 0.004
 Identities = 38/317 (11%), Positives = 86/317 (27%), Gaps = 21/317 (6%)

Query: 150 ARLS----SLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRL 205
           AR S    SL    ++    K       L     ++++ +  N I         + ++  
Sbjct: 1   ARFSIEGKSLKLDAITTEDEKSVF--AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 58

Query: 206 NNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYN 265
            +L++ + S   F   +   +     L    L       ++ + +       +E  + + 
Sbjct: 59  KDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFL 117

Query: 266 EIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTT 325
                                           + +   + P L ++    N         
Sbjct: 118 SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE 177

Query: 326 TQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYL----SLSNSSVSNNSRTLDQ 381
                    L                  ++ E +   Q L       N+     S  L  
Sbjct: 178 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 237

Query: 382 GLCPLVHLQELHMADNDLRGSLPWCLANM------TSLRILDVSSNQL----IGSISSSP 431
            L    +L+EL + D  L       + +         L+ L +  N++    + ++ +  
Sbjct: 238 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI 297

Query: 432 LIHLTSIEDLILSDNHF 448
              +  +  L L+ N F
Sbjct: 298 DEKMPDLLFLELNGNRF 314

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.9 bits (108), Expect = 2e-06
 Identities = 26/130 (20%), Positives = 50/130 (38%), Gaps = 8/130 (6%)

Query: 209 KVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEID 268
           +V  L+      ++L  L +L  +  L L  NRL          +L+ L  L++     +
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRA-----LPPALAALRCLEVLQASDN 53

Query: 269 NFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQG 328
             E     + L +L  L L    ++  +  +Q + S P L  L+L  N+  +      + 
Sbjct: 54  ALENVDGVANLPRLQELLLCNNRLQQSA-AIQPLVSCPRLVLLNLQGNSLCQEEGIQERL 112

Query: 329 FPHFKSLKEL 338
                S+  +
Sbjct: 113 AEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (97), Expect = 5e-05
 Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 13/127 (10%)

Query: 591 VFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEG 650
           V +++   L  ++      +  +  LDLS+N+L    P   A+ C+ +       ++   
Sbjct: 2   VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQ----ASDNAL 55

Query: 651 HMFSRNFNLTNLIWLQLEGNHFVG-EIPQSLSKCSSLQGLFLSNNSLSG------KIPRW 703
                  NL  L  L L  N        Q L  C  L  L L  NSL        ++   
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

Query: 704 LGNLTVL 710
           L +++ +
Sbjct: 116 LPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (97), Expect = 5e-05
 Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 7/125 (5%)

Query: 689 LFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSL 748
           L L++  L+  +   L  L ++ H+ +  N +    P     LR L++L  SDN +  ++
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALE-NV 58

Query: 749 PSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHL---NGNIPDRVDGLSQ 805
               +   ++++ L  N L          +C  L++L+L  N L    G      + L  
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118

Query: 806 LSYLI 810
           +S ++
Sbjct: 119 VSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (94), Expect = 1e-04
 Identities = 30/155 (19%), Positives = 50/155 (32%), Gaps = 38/155 (24%)

Query: 808 YLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFE 867
            L LAH +L   V   L +L  +  LDLS+N L    P+      L     + ++L+  +
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 868 TSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQ-IG 926
               +    +                                L L  NRL      Q + 
Sbjct: 60  GVANLPRLQE--------------------------------LLLCNNRLQQSAAIQPLV 87

Query: 927 NLTKIQTLNLSHNNLAGP---IPSTFSNLRNIESL 958
           +  ++  LNL  N+L             L ++ S+
Sbjct: 88  SCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.7 bits (92), Expect = 3e-04
 Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 6/109 (5%)

Query: 735 QILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNG 794
           ++L ++  +++  L      + +  + LS N L              L +L  S N L  
Sbjct: 1   RVLHLAHKDLT-VLCHLEQLLLVTHLDLSHNRLRAL--PPALAALRCLEVLQASDNALEN 57

Query: 795 NIPDRVDGLSQLSYLILAHNNLEGEVPIQ-LCRLNQLQLLDLSNNNLHG 842
                     Q   L+L +N L+    IQ L    +L LL+L  N+L  
Sbjct: 58  VDGVANLPRLQ--ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (90), Expect = 5e-04
 Identities = 24/133 (18%), Positives = 44/133 (33%), Gaps = 11/133 (8%)

Query: 233 RSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGI 292
           R L L    L     +   + L  +  LD+S+N +           L  L  L +L+   
Sbjct: 1   RVLHLAHKDLT---VLCHLEQLLLVTHLDLSHNRLRAL-----PPALAALRCLEVLQASD 52

Query: 293 RDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFL 352
                +   + + P L  L L  N   ++     Q       L  L +    +       
Sbjct: 53  NALENV-DGVANLPRLQELLLCNNRLQQS--AAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 109

Query: 353 QIIGESMPSIQYL 365
           + + E +PS+  +
Sbjct: 110 ERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.4 bits (86), Expect = 0.002
 Identities = 22/117 (18%), Positives = 38/117 (32%), Gaps = 26/117 (22%)

Query: 910  LDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNI-------------- 955
            L L+   L   +   +  L  +  L+LSHN L    P+  + LR +              
Sbjct: 3    LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVD 59

Query: 956  --------ESLDLSYNKL-SWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATF 1003
                    + L L  N+L        LV    L + ++  N+L  +   +       
Sbjct: 60   GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.0 bits (85), Expect = 0.002
 Identities = 25/124 (20%), Positives = 54/124 (43%), Gaps = 4/124 (3%)

Query: 371 SVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSS 430
            +++   T+   L  L+ +  L ++ N LR         + +LR L+V         +  
Sbjct: 4   HLAHKDLTVLCHLEQLLLVTHLDLSHNRLR----ALPPALAALRCLEVLQASDNALENVD 59

Query: 431 PLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQL 490
            + +L  +++L+L +N  Q   +++PL +  RL + + + N +  E      L      +
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 119

Query: 491 QSLL 494
            S+L
Sbjct: 120 SSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.0 bits (85), Expect = 0.002
 Identities = 22/111 (19%), Positives = 45/111 (40%), Gaps = 5/111 (4%)

Query: 202 LSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELD 261
           L +L  +   DLS    +N + +    L++LR L +         +V    +L  L+EL 
Sbjct: 16  LEQLLLVTHLDLS----HNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELL 71

Query: 262 MSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGS-FPSLNTL 311
           +  N +      Q      +L  L+L    +     + + +    PS++++
Sbjct: 72  LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (84), Expect = 0.003
 Identities = 23/110 (20%), Positives = 37/110 (33%), Gaps = 6/110 (5%)

Query: 541 RQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALD 600
           R L L +  L       +     +  LD+S N  +   P     + +   +  +  +   
Sbjct: 1   RVLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRALPP----ALAALRCLEVLQASDNA 54

Query: 601 GSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEG 650
                   N+  LQ L L NN+L         + C  L  L L  N+L  
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 4e-06
 Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 3/117 (2%)

Query: 904  PSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPS-TFSNLRNIESLDLSY 962
            P   SGL  + +  +      +     +  L + +      +       L  + +L +  
Sbjct: 7    PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 963  NKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPL 1019
            + L +  P        L+  ++++N L   +  +  Q  +  E    GNP  C   L
Sbjct: 66   SGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCAL 121

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 4e-05
 Identities = 19/134 (14%), Positives = 34/134 (25%)

Query: 602 SIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTN 661
                      L  L + N Q    +      G   LR+L +  + L             
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 662 LIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIE 721
           L  L L  N       +++   S  + +   N        RWL          +P+  ++
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQ 141

Query: 722 GPIPLEFCQLRILQ 735
                    +    
Sbjct: 142 CHGQGPLAHMPNAS 155

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 22/134 (16%), Positives = 45/134 (33%), Gaps = 1/134 (0%)

Query: 675 EIPQSLSKCSSLQGLFLSNNSLSGKIPR-WLGNLTVLRHIIMPKNHIEGPIPLEFCQLRI 733
           +    L    +L  L++ N      +    L  L  LR++ + K+ +    P  F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 734 LQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLN 793
           L  L++S N +          + ++++ LS N LH               +  +    L 
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQ 141

Query: 794 GNIPDRVDGLSQLS 807
            +    +  +   S
Sbjct: 142 CHGQGPLAHMPNAS 155

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 46.0 bits (107), Expect = 7e-06
 Identities = 30/149 (20%), Positives = 50/149 (33%), Gaps = 3/149 (2%)

Query: 602 SIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTN 661
            IP           L L++N+L     + L      L  L L  N L G   +     ++
Sbjct: 22  EIPRDIPLH--TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 662 LIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIE 721
           +  LQL  N       +       L+ L L +N +S  +P    +L  L  + +  N   
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

Query: 722 GPIPLEFCQLRILQILDISDNNISGSLPS 750
               L +     L+   ++        PS
Sbjct: 140 CNCHLAWF-AEWLRKKSLNGGAARCGAPS 167

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.5 bits (98), Expect = 8e-05
 Identities = 37/179 (20%), Positives = 68/179 (37%), Gaps = 9/179 (5%)

Query: 616 LDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNF-NLTNLIWLQLEGNHFVG 674
           +D +   L  EIP  + +       L L++N L        F  L +L+ L+L+ N   G
Sbjct: 13  VDCTGRGLK-EIPRDIPL---HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG 68

Query: 675 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRIL 734
             P +    S +Q L L  N +     +    L  L+ + +  N I   +P  F  L  L
Sbjct: 69  IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSL 128

Query: 735 QILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLN 793
             L+++ N  + +    +    + +  L+        + G       + I DL ++   
Sbjct: 129 TSLNLASNPFNCNCHLAWFAEWLRKKSLNGG----AARCGAPSKVRDVQIKDLPHSEFK 183

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.8 bits (91), Expect = 7e-04
 Identities = 27/177 (15%), Positives = 58/177 (32%), Gaps = 6/177 (3%)

Query: 681 SKCS-SLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQL-RILQILD 738
           + C      +  +   L  +IPR +        +++  N +              L  L+
Sbjct: 4   AMCHCEGTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLE 60

Query: 739 ISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPD 798
           +  N ++G  P+ ++     Q          ++    F     L  L+L  N ++  +P 
Sbjct: 61  LKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG 120

Query: 799 RVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE 855
             + L+ L+ L LA N       +        +   L+        PS   +  + +
Sbjct: 121 SFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRK-KSLNGGAARCGAPSKVRDVQIKD 176

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 7e-05
 Identities = 35/188 (18%), Positives = 69/188 (36%), Gaps = 19/188 (10%)

Query: 782 LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH 841
            M   L   ++   +      L Q++ L      ++    ++   LN L  ++ SNN L 
Sbjct: 20  KMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDGVE--YLNNLTQINFSNNQLT 75

Query: 842 GHIP-----------SCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDF 890
              P              +         N ++L         +  +D       L   + 
Sbjct: 76  DITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 135

Query: 891 TTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFS 950
           ++ +I+        + L  L+ S N++    P  + NLT ++ L++S N ++    S  +
Sbjct: 136 SSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLA 191

Query: 951 NLRNIESL 958
            L N+ESL
Sbjct: 192 KLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 35/191 (18%), Positives = 69/191 (36%), Gaps = 16/191 (8%)

Query: 100 FQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLD 159
             +     L   ++   V        + L  +  L           +  +  L++LT ++
Sbjct: 17  LAEKMKTVLGKTNVTDTVS------QTDLDQVTTLQADRL--GIKSIDGVEYLNNLTQIN 68

Query: 160 LSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKF--------VVSKGPKRLSRLNNLKVF 211
            S N+L     +K L  L D+   N     I           +     +         + 
Sbjct: 69  FSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 128

Query: 212 DLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFE 271
           +L+    +++ +S ++ LS L SL   +       D+K   +L+ LE LD+S N++ +  
Sbjct: 129 NLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDIS 188

Query: 272 VPQACSGLRKL 282
           V    + L  L
Sbjct: 189 VLAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 28/188 (14%), Positives = 63/188 (33%), Gaps = 5/188 (2%)

Query: 229 LSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLL 288
           L+     +L    +  ++   +   L  +  L      I + +  +  + L ++++ +  
Sbjct: 17  LAEKMKTVLGKTNVTDTVSQTD---LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQ 73

Query: 289 RVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALN 348
              I     L + +    + N +         T  T    F +  +  +   +   +   
Sbjct: 74  LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 133

Query: 349 TSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLA 408
                 I +        SL   + S+N  T  + L  L  L+ L ++ N +       LA
Sbjct: 134 ELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSD--ISVLA 191

Query: 409 NMTSLRIL 416
            +T+L  L
Sbjct: 192 KLTNLESL 199

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 4e-04
 Identities = 28/214 (13%), Positives = 52/214 (24%), Gaps = 4/214 (1%)

Query: 781 TLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNL 840
             + L      L         G   L  + ++ N++   +   +                
Sbjct: 30  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 89

Query: 841 HGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQ 900
           +    +      L        S          +  +    K  +    +    +I     
Sbjct: 90  NLLYINPEAFQNLPNLQYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 148

Query: 901 GRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDL 960
             +      L L+ N +              +     +NNL       F        LD+
Sbjct: 149 VGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 208

Query: 961 SYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIP 994
           S  ++     Y L  L  L   S    NL  K+P
Sbjct: 209 SRTRIHSLPSYGLENLKKLRARST--YNLK-KLP 239

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 5e-04
 Identities = 28/212 (13%), Positives = 62/212 (29%), Gaps = 4/212 (1%)

Query: 411 TSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAEN 470
            +   L     + +  I          +E + +S N     I  +   N  +L     E 
Sbjct: 29  RNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 87

Query: 471 NEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFP 530
                 I        PN Q   +  S+     +     +++   +      +I ++    
Sbjct: 88  ANNLLYINPEAFQNLPNLQYLLI--SNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER 145

Query: 531 NWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLT 590
           N  +  + +   L L  + +        +  +   L     NN    +P ++    S   
Sbjct: 146 NSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD-NNNLEELPNDVFHGASGPV 204

Query: 591 VFNISMNALDGSIPSSFGNMNFLQFLDLSNNQ 622
           + +IS   +         N+  L+     N +
Sbjct: 205 ILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 6e-04
 Identities = 25/230 (10%), Positives = 58/230 (25%), Gaps = 4/230 (1%)

Query: 735 QILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNG 794
           ++    ++ ++  +PS        ++      L   +++G F     L  +++S N +  
Sbjct: 11  RVFLCQESKVT-EIPSDL-PRNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLE 67

Query: 795 NIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLH 854
            I   V       + I                 N   L  L  +N               
Sbjct: 68  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 127

Query: 855 ERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSC 914
           ++            +      + +  +  IL   +       +        L        
Sbjct: 128 QKVLLDIQDNINIHTIERNSFVGLSFESVIL-WLNKNGIQEIHNCAFNGTQLDELNLSDN 186

Query: 915 NRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNK 964
           N L           +    L++S   +         NL+ + +      K
Sbjct: 187 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 0.001
 Identities = 34/219 (15%), Positives = 68/219 (31%), Gaps = 7/219 (3%)

Query: 602 SIPSSFGNMNFLQFLDLSNNQLTGEIPEHLA-MGCVSLRSLALSNNNLEGHMFSRNFNLT 660
            IPS          L     +L        +  G +    ++ ++          +    
Sbjct: 22  EIPSDLPRN--AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 79

Query: 661 NLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPR--WLGNLTVLRHIIMPKN 718
                  + N+ +   P++     +LQ L +SN  +              VL  I    N
Sbjct: 80  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 139

Query: 719 HIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFN 778
                            IL ++ N I       ++   +++++LS N    +L    F  
Sbjct: 140 IHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHG 199

Query: 779 CLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLE 817
               +ILD+S   ++      ++ L +L        NL+
Sbjct: 200 ASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK 236

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 4e-04
 Identities = 18/121 (14%), Positives = 41/121 (33%), Gaps = 7/121 (5%)

Query: 636 VSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNS 695
            S ++L L     +  + +        + L    +     +         L  L LSNN 
Sbjct: 22  GSQQALDLKGLRSDPDLVA----QNIDVVLNR-RSSMAATLRIIEENIPELLSLNLSNNR 76

Query: 696 LSGK--IPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYD 753
           L     +   +     L+ + +  N ++    L+  +   L+ L +  N++S +      
Sbjct: 77  LYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST 136

Query: 754 F 754
           +
Sbjct: 137 Y 137

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 31/165 (18%), Positives = 58/165 (35%), Gaps = 10/165 (6%)

Query: 659 LTNLIWLQLEGNHFVGEIP------QSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRH 712
             +++  + E     G IP       +LS   + + L LS N++  KI   L  +  LR 
Sbjct: 17  RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRI 74

Query: 713 IIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLK 772
           + + +N I+    L+               N   SL      V +  +++S N +    +
Sbjct: 75  LSLGRNLIKKIENLDAVA--DTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGE 132

Query: 773 EGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLE 817
                    L  L L+ N L  +  +          ++    NL+
Sbjct: 133 IDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLK 177

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	1102
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.86
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.78
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.75
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.71
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.71
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.7
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.69
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.69
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.67
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.67
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.67
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.61
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.6
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.59
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.51
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.51
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.39
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.37
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.37
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.37
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.35
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.35
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.2
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.16
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.06
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.02
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.09
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.05
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.9
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.65
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.52
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.09

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=1.8e-35  Score=325.92  Aligned_cols=297  Identities=27%  Similarity=0.378  Sum_probs=199.2

Q ss_pred             cccHHHHHHHHhhhhhccCCCCCCCCCCCCCCCCCCcC--cCceEecCCC--CcEEEEEcCCCCCCcccccccccCCCCC
Q 001313           26 GCLNHERFALLQLKLFFIDPYNYLLDWVDDEGATDCCQ--WERVSCNNTM--GRVVVLDLSQTHRGEYWYLNASLFTPFQ  101 (1102)
Q Consensus        26 ~c~~~~~~all~~k~~~~~~~~~l~~w~~~~~~~~cc~--w~gv~c~~~~--~~v~~L~L~~~~~~~~~~~~~~~~~~~~  101 (1102)
                      .|+++||+||++||+++.||. .+++|.. +  +|||.  |+||+|+..+  +||++|||+++...|...+.        
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~-~l~sW~~-~--~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp--------   69 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPT-TLSSWLP-T--TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIP--------   69 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCCT-T--SCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECC--------
T ss_pred             CCCHHHHHHHHHHHHHCCCCC-cCCCCCC-C--CCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCC--------
Confidence            699999999999999998875 7999975 3  79995  9999999643  48999999887555432111        


Q ss_pred             CCCEEeCCCCCCCCcccchhhhhhcCCCCCcEEeCCC-CcCCcchhHhhhcCCCcCEEEcCCCcccCCCChhhhccCCCC
Q 001313          102 QLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVG-NLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDL  180 (1102)
Q Consensus       102 ~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~-n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L  180 (1102)
                                           +.++++++||+|+|++ |.+.|.+|++|+++++|++|+|++|++.+. .+..+..+.+|
T Consensus        70 ---------------------~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~-~~~~~~~~~~L  127 (313)
T d1ogqa_          70 ---------------------SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTL  127 (313)
T ss_dssp             ---------------------GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTC
T ss_pred             ---------------------hHHhcCccccccccccccccccccccccccccccchhhhcccccccc-ccccccchhhh
Confidence                                 2455666666666665 566666777777777777777777776653 33455566666


Q ss_pred             cEEEcCCCcCCcccccCCccccCCCCCcCEEEcCCCcCChhhhHhhhccCCC-cEEEccCCcCCCCCchhhccCCCCCcE
Q 001313          181 EKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSL-RSLLLYDNRLEGSIDVKEFDSLSNLEE  259 (1102)
Q Consensus       181 ~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L-~~L~L~~n~l~~~~~~~~l~~l~~L~~  259 (1102)
                      +++++++|.+.+..+    ..++++++|+++++++|.+.+.+|..+..+.++ +.++++.|++++..+. .+..+..+ +
T Consensus       128 ~~l~l~~N~~~~~~p----~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~-~~~~l~~~-~  201 (313)
T d1ogqa_         128 VTLDFSYNALSGTLP----PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP-TFANLNLA-F  201 (313)
T ss_dssp             CEEECCSSEEESCCC----GGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCG-GGGGCCCS-E
T ss_pred             cccccccccccccCc----hhhccCcccceeeccccccccccccccccccccccccccccccccccccc-cccccccc-c
Confidence            666666665554433    455666666666666666665556555555554 5555666655543332 33333222 3


Q ss_pred             EecccCccCCcchhhhhccccccceeccccccccCchhhhhhcCCCCCCCEEeCCCCCccccccccccccccccccceee
Q 001313          260 LDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELY  339 (1102)
Q Consensus       260 L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~  339 (1102)
                      ++++.+...+                                                                      
T Consensus       202 l~l~~~~~~~----------------------------------------------------------------------  211 (313)
T d1ogqa_         202 VDLSRNMLEG----------------------------------------------------------------------  211 (313)
T ss_dssp             EECCSSEEEE----------------------------------------------------------------------
T ss_pred             cccccccccc----------------------------------------------------------------------
Confidence            4444333221                                                                      


Q ss_pred             cccchhhhchhhHHHhhccCCCCcEEecccCcCcCCcccccCCccCCCCccEEEcCCCcCCCCcchhccCCCCCcEEEcC
Q 001313          340 MDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVS  419 (1102)
Q Consensus       340 l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  419 (1102)
                                .++..... +++++.++++++.+.+.++    .+..+++|+.|+|++|++++.+|..++++++|++|+++
T Consensus       212 ----------~~~~~~~~-~~~l~~l~~~~~~l~~~~~----~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls  276 (313)
T d1ogqa_         212 ----------DASVLFGS-DKNTQKIHLAKNSLAFDLG----KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS  276 (313)
T ss_dssp             ----------CCGGGCCT-TSCCSEEECCSSEECCBGG----GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECC
T ss_pred             ----------cccccccc-ccccccccccccccccccc----ccccccccccccCccCeecccCChHHhCCCCCCEEECc
Confidence                      11111112 5667777777777666544    35667889999999999998899999999999999999


Q ss_pred             CCccccccCCcccccCCccCeeecCCcccc
Q 001313          420 SNQLIGSISSSPLIHLTSIEDLILSDNHFQ  449 (1102)
Q Consensus       420 ~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~  449 (1102)
                      +|+++|.+|  .+.++++|+.+++++|+..
T Consensus       277 ~N~l~g~iP--~~~~L~~L~~l~l~~N~~l  304 (313)
T d1ogqa_         277 FNNLCGEIP--QGGNLQRFDVSAYANNKCL  304 (313)
T ss_dssp             SSEEEEECC--CSTTGGGSCGGGTCSSSEE
T ss_pred             CCcccccCC--CcccCCCCCHHHhCCCccc
Confidence            999998874  3577888888989888743

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=1.6e-31  Score=293.96  Aligned_cols=258  Identities=33%  Similarity=0.558  Sum_probs=218.6

Q ss_pred             CCcEEEccCCcCCC--CCCccccCCCCccEEECCC-CcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEE
Q 001313          685 SLQGLFLSNNSLSG--KIPRWLGNLTVLRHIIMPK-NHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVH  761 (1102)
Q Consensus       685 ~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~  761 (1102)
                      .++.|+|++|.++|  .+|..++++++|++|+|++ |.++|.+|..|.++++|++|++++|++.+.              
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~--------------  116 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA--------------  116 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE--------------
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccccccc--------------
Confidence            46677777777765  4667777777777777775 677777777777777777777777776642              


Q ss_pred             ccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCC-CEEECcCccC
Q 001313          762 LSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQL-QLLDLSNNNL  840 (1102)
Q Consensus       762 l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L-~~L~Ls~N~l  840 (1102)
                               .+. .+..+..|+.+++++|.+.+.+|..+.+++.|+.+++++|.+++.+|..+..+..+ +.+++++|++
T Consensus       117 ---------~~~-~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l  186 (313)
T d1ogqa_         117 ---------IPD-FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             ---------CCG-GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             ---------ccc-cccchhhhcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccc
Confidence                     222 67777888888888888888888899999999999999999999999988888776 8899999999


Q ss_pred             CCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCC
Q 001313          841 HGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGH  920 (1102)
Q Consensus       841 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~  920 (1102)
                      ++..|..+.++.                                                      ...+++++|...+.
T Consensus       187 ~~~~~~~~~~l~------------------------------------------------------~~~l~l~~~~~~~~  212 (313)
T d1ogqa_         187 TGKIPPTFANLN------------------------------------------------------LAFVDLSRNMLEGD  212 (313)
T ss_dssp             EEECCGGGGGCC------------------------------------------------------CSEEECCSSEEEEC
T ss_pred             cccccccccccc------------------------------------------------------cccccccccccccc
Confidence            988887766543                                                      34689999999999


Q ss_pred             CcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCCcccccc
Q 001313          921 IPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQF 1000 (1102)
Q Consensus       921 ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~ 1000 (1102)
                      +|..++.+++++.+++++|.+++.+| .++.+++|+.|||++|+++|.+|..++++++|++|||++|+|+|.+|+ ++.+
T Consensus       213 ~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L  290 (313)
T d1ogqa_         213 ASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNL  290 (313)
T ss_dssp             CGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTG
T ss_pred             cccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccC
Confidence            99999999999999999999998766 588999999999999999999999999999999999999999999998 6889


Q ss_pred             CCCCccccCCCCCCCCCCCCCC
Q 001313         1001 ATFNESSYEGNPFLCGPPLPIC 1022 (1102)
Q Consensus      1001 ~~~~~~~~~gN~~lC~~~~~~~ 1022 (1102)
                      ..++..++.||+.+||.|++.|
T Consensus       291 ~~L~~l~l~~N~~l~g~plp~c  312 (313)
T d1ogqa_         291 QRFDVSAYANNKCLCGSPLPAC  312 (313)
T ss_dssp             GGSCGGGTCSSSEEESTTSSCC
T ss_pred             CCCCHHHhCCCccccCCCCCCC
Confidence            9999999999999999988643

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=1.2e-25  Score=255.30  Aligned_cols=342  Identities=23%  Similarity=0.259  Sum_probs=202.8

Q ss_pred             cCCCCcEEEccCCCCcCCCcCCCCCCCCcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcE
Q 001313          536 NNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQF  615 (1102)
Q Consensus       536 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  615 (1102)
                      .+.+|++|+++++.++..  ..+..+++|++|++++|+++ .+|. +. .+++|++|++++|++.+..  .++++++|+.
T Consensus        42 ~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~-~l~~-l~-~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~  114 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-DITP-LK-NLTKLVDILMNNNQIADIT--PLANLTNLTG  114 (384)
T ss_dssp             HHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSCCCCCG--GGTTCTTCCE
T ss_pred             HhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCC-CCcc-cc-CCccccccccccccccccc--cccccccccc
Confidence            445666666666666543  23445666666666666665 3332 22 2566666666666665432  2556666666


Q ss_pred             EEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCc
Q 001313          616 LDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNS  695 (1102)
Q Consensus       616 L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  695 (1102)
                      |++++|.+++ ++...  ....+.......|.+......................     ....+...+.........|.
T Consensus       115 L~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~  186 (384)
T d2omza2         115 LTLFNNQITD-IDPLK--NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVT-----DLKPLANLTTLERLDISSNK  186 (384)
T ss_dssp             EECCSSCCCC-CGGGT--TCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCC-----CCGGGTTCTTCCEEECCSSC
T ss_pred             cccccccccc-ccccc--ccccccccccccccccccccccccccccccccccccc-----hhhhhccccccccccccccc
Confidence            6666666552 22221  2344555555555544333222211111111111111     11112222233333333332


Q ss_pred             CCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCccc
Q 001313          696 LSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGT  775 (1102)
Q Consensus       696 l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~  775 (1102)
                      ..  .+                        ..+..+++++.+++++|.+++..| ....++|+++++++|.++. ++  .
T Consensus       187 ~~--~~------------------------~~~~~l~~~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n~l~~-~~--~  236 (384)
T d2omza2         187 VS--DI------------------------SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD-IG--T  236 (384)
T ss_dssp             CC--CC------------------------GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-CG--G
T ss_pred             cc--cc------------------------cccccccccceeeccCCccCCCCc-ccccCCCCEEECCCCCCCC-cc--h
Confidence            21  22                        233344444455555544443322 2223445555555555443 22  4


Q ss_pred             ccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccc
Q 001313          776 FFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE  855 (1102)
Q Consensus       776 ~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~  855 (1102)
                      +..+++|+.|++++|.+++..  .+..+++|++|++++|++++..  .+..++.++.+++++|.+++..  .+..     
T Consensus       237 l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~~--~~~~-----  305 (384)
T d2omza2         237 LASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDIS--PISN-----  305 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCCG--GGGG-----
T ss_pred             hhcccccchhccccCccCCCC--cccccccCCEeeccCcccCCCC--cccccccccccccccccccccc--ccch-----
Confidence            677788888888888888654  3777888999999888888543  3677888889999888887521  1211     


Q ss_pred             cccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEE
Q 001313          856 RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLN  935 (1102)
Q Consensus       856 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~  935 (1102)
                                                                      ...++.|++++|++++..  .+..+++|++|+
T Consensus       306 ------------------------------------------------~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~  335 (384)
T d2omza2         306 ------------------------------------------------LKNLTYLTLYFNNISDIS--PVSSLTKLQRLF  335 (384)
T ss_dssp             ------------------------------------------------CTTCSEEECCSSCCSCCG--GGGGCTTCCEEE
T ss_pred             ------------------------------------------------hcccCeEECCCCCCCCCc--ccccCCCCCEEE
Confidence                                                            125788999999998753  378899999999


Q ss_pred             CCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccC
Q 001313          936 LSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYN  987 (1102)
Q Consensus       936 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N  987 (1102)
                      |++|+|++ +| .|+++++|++||+++|++++.+|  +.++++|++|++++|
T Consensus       336 L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         336 FANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            99999985 44 58899999999999999997665  888999999999987

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.93  E-value=2.2e-24  Score=244.79  Aligned_cols=341  Identities=25%  Similarity=0.275  Sum_probs=242.9

Q ss_pred             CCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCee
Q 001313          586 LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWL  665 (1102)
Q Consensus       586 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  665 (1102)
                      +.+|++|++++++++..  +.++.+++|++|++++|+++ .+|.  +.++++|++|++++|++.+..+  +.++++|+.|
T Consensus        43 l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~-~l~~--l~~L~~L~~L~L~~n~i~~i~~--l~~l~~L~~L  115 (384)
T d2omza2          43 LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL  115 (384)
T ss_dssp             HTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred             hCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCC-CCcc--ccCCcccccccccccccccccc--cccccccccc
Confidence            45677777777777642  35667777777777777777 4553  3467777777777777766533  5677777888


Q ss_pred             eccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccc
Q 001313          666 QLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNIS  745 (1102)
Q Consensus       666 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~  745 (1102)
                      +++++.+++..+  ......+.......|.+....+.................     ....+...+.........|...
T Consensus       116 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  188 (384)
T d2omza2         116 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVT-----DLKPLANLTTLERLDISSNKVS  188 (384)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCC-----CCGGGTTCTTCCEEECCSSCCC
T ss_pred             cccccccccccc--ccccccccccccccccccccccccccccccccccccccc-----hhhhhccccccccccccccccc
Confidence            877777764433  334456667777776665433332222222222222221     2223445555566666666543


Q ss_pred             cCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhc
Q 001313          746 GSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLC  825 (1102)
Q Consensus       746 ~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~  825 (1102)
                       .......+++++.+++++|.+++..|   +..+++|+.|++++|++++.  ..+..+++|+.|++++|++++..+  +.
T Consensus       189 -~~~~~~~l~~~~~l~l~~n~i~~~~~---~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~  260 (384)
T d2omza2         189 -DISVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LS  260 (384)
T ss_dssp             -CCGGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred             -cccccccccccceeeccCCccCCCCc---ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCCc--cc
Confidence             22334467889999999999987543   45678999999999999853  468889999999999999986554  78


Q ss_pred             CCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCC
Q 001313          826 RLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPS  905 (1102)
Q Consensus       826 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  905 (1102)
                      .+++|++|++++|++++..|  +..+                                                     .
T Consensus       261 ~~~~L~~L~l~~~~l~~~~~--~~~~-----------------------------------------------------~  285 (384)
T d2omza2         261 GLTKLTELKLGANQISNISP--LAGL-----------------------------------------------------T  285 (384)
T ss_dssp             TCTTCSEEECCSSCCCCCGG--GTTC-----------------------------------------------------T
T ss_pred             ccccCCEeeccCcccCCCCc--cccc-----------------------------------------------------c
Confidence            89999999999999875433  2111                                                     1


Q ss_pred             CCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcc
Q 001313          906 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA  985 (1102)
Q Consensus       906 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls  985 (1102)
                      .++.++++.|.+++  +..+..+++++.|++++|++++..|  +..+++|+.|++++|+|++ +| .+.++++|++|+++
T Consensus       286 ~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~  359 (384)
T d2omza2         286 ALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAG  359 (384)
T ss_dssp             TCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECC
T ss_pred             cccccccccccccc--ccccchhcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECC
Confidence            46789999999986  3458889999999999999997643  8899999999999999985 44 68999999999999


Q ss_pred             cCcCcccCCccccccCCCCccccCCC
Q 001313          986 YNNLSGKIPERAAQFATFNESSYEGN 1011 (1102)
Q Consensus       986 ~N~l~~~~p~~~~~~~~~~~~~~~gN 1011 (1102)
                      +|++++.+|  +..+..+..+.+.+|
T Consensus       360 ~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         360 HNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             SSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCcCCCChh--hccCCCCCEeeCCCC
Confidence            999998765  566777777777665

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=9.4e-24  Score=230.52  Aligned_cols=206  Identities=24%  Similarity=0.300  Sum_probs=134.0

Q ss_pred             CcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEcc
Q 001313          613 LQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLS  692 (1102)
Q Consensus       613 L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  692 (1102)
                      ++.+|-++++++ .+|..+.   +++++|++++|+++...+..|.++++|++|++++|.+....|..|..+++|++|+++
T Consensus        12 ~~~~~C~~~~L~-~lP~~l~---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          12 LRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             TTEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCC-ccCCCCC---CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            455666666665 6665442   456666666666666665666677777777777777776667777777788888888


Q ss_pred             CCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccC
Q 001313          693 NNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLK  772 (1102)
Q Consensus       693 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~  772 (1102)
                      +|+++ .+|..+  ...+..|++.+|.+.+..+..+.....+..++...|.....                     +..+
T Consensus        88 ~n~l~-~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~---------------------~~~~  143 (305)
T d1xkua_          88 KNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS---------------------GIEN  143 (305)
T ss_dssp             SSCCS-BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG---------------------GBCT
T ss_pred             CCccC-cCccch--hhhhhhhhccccchhhhhhhhhhcccccccccccccccccc---------------------CCCc
Confidence            88777 445432  34677777777777766666666666777777666644311                     1112


Q ss_pred             cccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCccccc
Q 001313          773 EGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN  850 (1102)
Q Consensus       773 ~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  850 (1102)
                       ..|..+++|+.+++++|.++. +|..+  +++|+.|++++|..++..+..|.+++.++.|++++|.+++..|.++.+
T Consensus       144 -~~~~~l~~L~~l~l~~n~l~~-l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~  217 (305)
T d1xkua_         144 -GAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN  217 (305)
T ss_dssp             -TGGGGCTTCCEEECCSSCCCS-CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred             -cccccccccCccccccCCccc-cCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccc
Confidence             256667777777777777763 34332  467777777777777777777777777777777777666555544443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=2.6e-23  Score=226.98  Aligned_cols=245  Identities=23%  Similarity=0.301  Sum_probs=142.4

Q ss_pred             CcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEE
Q 001313          563 QLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLA  642 (1102)
Q Consensus       563 ~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~  642 (1102)
                      ..+.+|-+++.++ .+|..+   .+++++|+|++|+++...+.+|.++++|++|++++|.+. .++...+.++++|++|+
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l---~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~-~i~~~~f~~l~~L~~L~   85 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLY   85 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEE
T ss_pred             cCCEEEecCCCCC-ccCCCC---CCCCCEEECcCCcCCCcChhHhhcccccccccccccccc-ccchhhhhCCCccCEec
Confidence            3456666666666 666554   245666666666666554455666666666666666665 44433344455555555


Q ss_pred             ccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcc--
Q 001313          643 LSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHI--  720 (1102)
Q Consensus       643 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l--  720 (1102)
                      +++|+++..                         |..+  ...++.|++.+|.+.+..+..+.....+..++...|..  
T Consensus        86 l~~n~l~~l-------------------------~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~  138 (305)
T d1xkua_          86 LSKNQLKEL-------------------------PEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS  138 (305)
T ss_dssp             CCSSCCSBC-------------------------CSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG
T ss_pred             ccCCccCcC-------------------------ccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccc
Confidence            555554432                         2211  23455555555555544444445555555555555532  


Q ss_pred             cCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccc
Q 001313          721 EGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV  800 (1102)
Q Consensus       721 ~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~  800 (1102)
                      ....+..+..+++|+.+++++|.++. +|.. .+++++.|++++|...+..+. .|.+++.++.|++++|.+++..+.++
T Consensus       139 ~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~-~~~~L~~L~l~~n~~~~~~~~-~~~~~~~l~~L~~s~n~l~~~~~~~~  215 (305)
T d1xkua_         139 SGIENGAFQGMKKLSYIRIADTNITT-IPQG-LPPSLTELHLDGNKITKVDAA-SLKGLNNLAKLGLSFNSISAVDNGSL  215 (305)
T ss_dssp             GGBCTTGGGGCTTCCEEECCSSCCCS-CCSS-CCTTCSEEECTTSCCCEECTG-GGTTCTTCCEEECCSSCCCEECTTTG
T ss_pred             cCCCccccccccccCccccccCCccc-cCcc-cCCccCEEECCCCcCCCCChh-Hhhccccccccccccccccccccccc
Confidence            22334456666777777777776652 2222 134555555555555554444 66666777777777777776666667


Q ss_pred             cCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCC
Q 001313          801 DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGH  843 (1102)
Q Consensus       801 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  843 (1102)
                      .++++|++|+|++|+++ .+|.++..+++|++|+|++|+|+..
T Consensus       216 ~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i  257 (305)
T d1xkua_         216 ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI  257 (305)
T ss_dssp             GGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCC
T ss_pred             cccccceeeeccccccc-ccccccccccCCCEEECCCCccCcc
Confidence            77777777777777766 4566666677777777777766643

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=8.8e-24  Score=227.79  Aligned_cols=209  Identities=26%  Similarity=0.234  Sum_probs=116.1

Q ss_pred             CccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEcc
Q 001313          709 VLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLS  788 (1102)
Q Consensus       709 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls  788 (1102)
                      ++++|+|++|++++..+.+|.++++|++|++++|++.+..+                        ..+.+++.+..++..
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~------------------------~~~~~~~~~~~l~~~   88 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA------------------------AAFTGLALLEQLDLS   88 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECT------------------------TTTTTCTTCCEEECC
T ss_pred             CCCEEECcCCcCCCCCHHHhhcccccccccccccccccccc------------------------ccccccccccccccc
Confidence            44555555555554444455555555555555555542221                        133333444444332


Q ss_pred             -CccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCcc
Q 001313          789 -YNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFE  867 (1102)
Q Consensus       789 -~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~  867 (1102)
                       .|.++...|..|.++++|++|++++|.+.+..+..+...++|+.+++++|++++..+..|....               
T Consensus        89 ~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~---------------  153 (284)
T d1ozna_          89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG---------------  153 (284)
T ss_dssp             SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT---------------
T ss_pred             cccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhcccc---------------
Confidence             3334444444555555555555555555544444555555555555555555544444443322               


Q ss_pred             chhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcc
Q 001313          868 TSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPS  947 (1102)
Q Consensus       868 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~  947 (1102)
                                                            .|+.|++++|++++..|..|.++++|+.+++++|++++..|.
T Consensus       154 --------------------------------------~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~  195 (284)
T d1ozna_         154 --------------------------------------NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH  195 (284)
T ss_dssp             --------------------------------------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             --------------------------------------chhhcccccCcccccchhhhccccccchhhhhhccccccChh
Confidence                                                  355566666666655555666666666666666666666666


Q ss_pred             cccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCC
Q 001313          948 TFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIP  994 (1102)
Q Consensus       948 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p  994 (1102)
                      .|.++++|++||+++|++.+..|..|.++++|+++++++|++.|.++
T Consensus       196 ~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             HhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCcc
Confidence            66666666666666666666666666666666666666666666554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.1e-23  Score=224.78  Aligned_cols=225  Identities=24%  Similarity=0.220  Sum_probs=154.5

Q ss_pred             EEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccc
Q 001313          566 LLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSN  645 (1102)
Q Consensus       566 ~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~  645 (1102)
                      .++.+++.++ .+|..+   .+.+++|+|++|+++++.+.+|.++++|++|++++|++. .++...+             
T Consensus        15 ~v~c~~~~L~-~iP~~i---p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~-~i~~~~~-------------   76 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAF-------------   76 (284)
T ss_dssp             EEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTT-------------
T ss_pred             EEEcCCCCCC-ccCCCC---CCCCCEEECcCCcCCCCCHHHhhcccccccccccccccc-ccccccc-------------
Confidence            4556666665 556544   245566666666666555555666666666666666655 3443333             


Q ss_pred             cccCCcccccccCCCccCeeecc-CccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCC
Q 001313          646 NNLEGHMFSRNFNLTNLIWLQLE-GNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPI  724 (1102)
Q Consensus       646 n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~  724 (1102)
                                 .+++.++.+... .+.++...+..|.++++|++|++++|.+....+..+...++|+.+++++|+++++.
T Consensus        77 -----------~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~  145 (284)
T d1ozna_          77 -----------TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP  145 (284)
T ss_dssp             -----------TTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             -----------cccccccccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccC
Confidence                       334444444332 33344444556666677777777777766555566666677777777777777666


Q ss_pred             cccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCC
Q 001313          725 PLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLS  804 (1102)
Q Consensus       725 ~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~  804 (1102)
                      +..|..+++|+.|++++|+++                        .+++.+|.++++|+.+++++|++++..|..|.+++
T Consensus       146 ~~~f~~~~~L~~L~l~~N~l~------------------------~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~  201 (284)
T d1ozna_         146 DDTFRDLGNLTHLFLHGNRIS------------------------SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG  201 (284)
T ss_dssp             TTTTTTCTTCCEEECCSSCCC------------------------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             hhHhccccchhhcccccCccc------------------------ccchhhhccccccchhhhhhccccccChhHhhhhh
Confidence            666777777777777777665                        24444788888899999999999988889999999


Q ss_pred             CCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCC
Q 001313          805 QLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGH  843 (1102)
Q Consensus       805 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  843 (1102)
                      +|++|++++|++.+..|..|..+++|++|++++|++...
T Consensus       202 ~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~  240 (284)
T d1ozna_         202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD  240 (284)
T ss_dssp             TCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             hcccccccccccccccccccccccccCEEEecCCCCCCC
Confidence            999999999999988888899999999999999988753

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.9e-21  Score=206.73  Aligned_cols=167  Identities=25%  Similarity=0.240  Sum_probs=126.0

Q ss_pred             cCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCccccc
Q 001313          771 LKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN  850 (1102)
Q Consensus       771 i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  850 (1102)
                      +|..+|.++++|++|+|++|+++.. | .++.+++|++|+|++|+++ ..+..+..+++|+.|++++|.+.+..+..+..
T Consensus        46 l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  122 (266)
T d1p9ag_          46 FSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG  122 (266)
T ss_dssp             EEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT
T ss_pred             cCHHHhhcccccccccccccccccc-c-ccccccccccccccccccc-ccccccccccccccccccccccceeecccccc
Confidence            4433566666666666666666632 2 2456677777777777776 34556777777777777777776555444433


Q ss_pred             ccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCc
Q 001313          851 TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTK  930 (1102)
Q Consensus       851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~  930 (1102)
                      +.                                                     .++.|++++|.+++..+..+..+++
T Consensus       123 l~-----------------------------------------------------~l~~L~l~~n~l~~l~~~~~~~l~~  149 (266)
T d1p9ag_         123 LG-----------------------------------------------------ELQELYLKGNELKTLPPGLLTPTPK  149 (266)
T ss_dssp             CT-----------------------------------------------------TCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred             cc-----------------------------------------------------ccccccccccccceecccccccccc
Confidence            22                                                     5677888888888777777888899


Q ss_pred             CCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCC
Q 001313          931 IQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIP  994 (1102)
Q Consensus       931 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p  994 (1102)
                      |+.|++++|+|++..+..|+.+++|++|||++|+|+ .+|..+..+++|+.|++++|++.|.+.
T Consensus       150 l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~  212 (266)
T d1p9ag_         150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE  212 (266)
T ss_dssp             CCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             chhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCcc
Confidence            999999999999888888999999999999999998 788888889999999999999987543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=6.3e-21  Score=202.60  Aligned_cols=201  Identities=23%  Similarity=0.184  Sum_probs=158.8

Q ss_pred             CCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEc
Q 001313          683 CSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHL  762 (1102)
Q Consensus       683 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l  762 (1102)
                      ...+.+++.+++.++ .+|..+.  +++++|+|++|++++..+..|.++++|++|+|++|+++                 
T Consensus         9 ~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-----------------   68 (266)
T d1p9ag_           9 VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-----------------   68 (266)
T ss_dssp             STTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-----------------
T ss_pred             cCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-----------------
Confidence            344556677777777 4665553  46778888888877666677778888888888887775                 


Q ss_pred             cCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCC
Q 001313          763 SKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHG  842 (1102)
Q Consensus       763 ~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  842 (1102)
                             .+|  .+..+++|++|++++|++++ .+..+.++++|++|++++|++.+..+..+..+.+++.|++++|.++.
T Consensus        69 -------~l~--~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~  138 (266)
T d1p9ag_          69 -------KLQ--VDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT  138 (266)
T ss_dssp             -------EEE--CCSCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC
T ss_pred             -------ccc--cccccccccccccccccccc-cccccccccccccccccccccceeeccccccccccccccccccccce
Confidence                   232  24556778888888888874 46677888888888888888887778888888899999999998887


Q ss_pred             CCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCc
Q 001313          843 HIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIP  922 (1102)
Q Consensus       843 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip  922 (1102)
                      ..+..+..+.                                                     .++.+++++|++++..+
T Consensus       139 l~~~~~~~l~-----------------------------------------------------~l~~l~l~~N~l~~~~~  165 (266)
T d1p9ag_         139 LPPGLLTPTP-----------------------------------------------------KLEKLSLANNNLTELPA  165 (266)
T ss_dssp             CCTTTTTTCT-----------------------------------------------------TCCEEECTTSCCSCCCT
T ss_pred             eccccccccc-----------------------------------------------------cchhcccccccccccCc
Confidence            6666555443                                                     57889999999998888


Q ss_pred             ccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcc
Q 001313          923 PQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSW  967 (1102)
Q Consensus       923 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  967 (1102)
                      ..|..+++|++|||++|+|+ .+|+.+..+++|+.|+|++|.+..
T Consensus       166 ~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         166 GLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             TTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             cccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCC
Confidence            88999999999999999999 788888899999999999998874

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.78  E-value=5.9e-17  Score=180.31  Aligned_cols=58  Identities=28%  Similarity=0.258  Sum_probs=31.4

Q ss_pred             ccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCC
Q 001313          776 FFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH  841 (1102)
Q Consensus       776 ~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  841 (1102)
                      +..++.|+.+++++|.... .|.   ...++..+.+.+|.+... +.   ..+.+...++..+.+.
T Consensus       200 ~~~l~~L~~l~l~~n~~~~-~~~---~~~~l~~~~~~~~~~~~~-~~---~~~~l~~~~~~~~~~~  257 (353)
T d1jl5a_         200 LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDL-PE---LPQSLTFLDVSENIFS  257 (353)
T ss_dssp             CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS
T ss_pred             ccccccccccccccccccc-ccc---cccccccccccccccccc-cc---cccccccccccccccc
Confidence            4456667777777666542 222   234566667777666532 21   2345556666555543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.75  E-value=2.7e-16  Score=174.85  Aligned_cols=55  Identities=31%  Similarity=0.487  Sum_probs=30.8

Q ss_pred             CCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCc
Q 001313          928 LTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLS  990 (1102)
Q Consensus       928 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~  990 (1102)
                      +++|++|+|++|+|+ .+|..   +++|+.|+|++|+|+ .+|..   +.+|+.|++++|+++
T Consensus       283 ~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~  337 (353)
T d1jl5a_         283 PPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR  337 (353)
T ss_dssp             CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS
T ss_pred             CCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC
Confidence            355666666666666 34432   345566666666665 34432   345666666666655

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.71  E-value=1.3e-17  Score=166.88  Aligned_cols=178  Identities=22%  Similarity=0.289  Sum_probs=127.0

Q ss_pred             ccEEEccCccCcccCCccccCCCCCCEEEccCccccccC-chhhcCCCCCCEEECcCccCCCCCCcccccccccccccCC
Q 001313          782 LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEV-PIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNG  860 (1102)
Q Consensus       782 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~  860 (1102)
                      .+.++.++++++ .+|..+.  +++++|+|++|+|++.+ +..|..+++|+.|+|++|.+++..+..|..+.        
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~--------   78 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS--------   78 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT--------
T ss_pred             CCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccccc--------
Confidence            346677777777 4555443  57778888888887544 55677788888888888888877777665544        


Q ss_pred             CCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCC
Q 001313          861 SSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNN  940 (1102)
Q Consensus       861 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~  940 (1102)
                                                                   .|+.|+|++|++++..|..|.++++|++|+|++|+
T Consensus        79 ---------------------------------------------~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~  113 (192)
T d1w8aa_          79 ---------------------------------------------HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ  113 (192)
T ss_dssp             ---------------------------------------------TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSC
T ss_pred             ---------------------------------------------ccceeeeccccccccCHHHHhCCCcccccccCCcc
Confidence                                                         57788888888887777788888889999999999


Q ss_pred             CCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCCccccccCCCCccccCCCCCCCCCCC
Q 001313          941 LAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPL 1019 (1102)
Q Consensus       941 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~gN~~lC~~~~ 1019 (1102)
                      |+++.|++|..+++|++|+|++|.+.+..+..+. ...++.+.+..|.+.+..|..   +......++..|.+.|.++-
T Consensus       114 l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~-~~~l~~~~l~~~~~~c~~p~~---l~~~~l~~L~~n~l~C~~~~  188 (192)
T d1w8aa_         114 ISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF-AEWLRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEFKCSSEN  188 (192)
T ss_dssp             CCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH-HHHHHHHCCSGGGCBBCSSTT---TTTSBGGGSCTTTCCCCCC-
T ss_pred             ccccCHHHhcCCcccccccccccccccccchHHH-hhhhhhhcccCCCeEeCCChh---hcCCEeeecCHhhCcCCCCC
Confidence            9888888888888899999999888754432221 123455567777887777753   34444556677777776553

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=4.3e-19  Score=205.90  Aligned_cols=61  Identities=16%  Similarity=0.205  Sum_probs=31.5

Q ss_pred             CCcEEeCCCCcCCcch-hHhhhcCCCcCEEEcCCCcccCCCCh----hhhccCCCCcEEEcCCCcCC
Q 001313          130 NLKMLNLVGNLFNNSI-LSSLARLSSLTSLDLSANRLKGSIDI----KELDSLRDLEKLNIGRNMID  191 (1102)
Q Consensus       130 ~L~~L~Ls~n~~~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~----~~l~~l~~L~~L~Ls~n~~~  191 (1102)
                      +|++||++++.+++.. ..-+..++++++|+|++|.++.. ..    ..+..+++|++|+|++|.++
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~-~~~~l~~~L~~~~~L~~LdLs~N~i~   68 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEA-RCKDISSALRVNPALAELNLRSNELG   68 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHH-HHHHHHHHHHTCTTCCEEECTTCCCH
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHH-HHHHHHHHHhcCCCCCEEECcCCcCC
Confidence            4666777777666422 23345566666666666655421 11    12334445555555555443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.3e-17  Score=171.32  Aligned_cols=105  Identities=17%  Similarity=0.205  Sum_probs=65.6

Q ss_pred             CEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEcc
Q 001313          565 RLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALS  644 (1102)
Q Consensus       565 ~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~  644 (1102)
                      +.++.++..++ .+|..+   .+++++|++++|+++...+.+|.++++|++|++++|.+...++...|.+++.++++.+.
T Consensus        11 ~~i~c~~~~l~-~iP~~l---~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCS---CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCC---CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            46666666666 667654   24677777777777766566677777777777777777655665555556666666554


Q ss_pred             c-cccCCcccccccCCCccCeeeccCccCc
Q 001313          645 N-NNLEGHMFSRNFNLTNLIWLQLEGNHFV  673 (1102)
Q Consensus       645 ~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~  673 (1102)
                      . |++....+..|.++++|+++++++|.+.
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCC
T ss_pred             ccccccccccccccccccccccccchhhhc
Confidence            3 4454444444555555555555555444

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=5.5e-17  Score=169.58  Aligned_cols=220  Identities=18%  Similarity=0.154  Sum_probs=125.4

Q ss_pred             cEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcc
Q 001313          687 QGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNM  766 (1102)
Q Consensus       687 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~  766 (1102)
                      +.++.++..++ .+|..+.  +++++|++++|+++...+..|.++++|++|++++|.+..                    
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~--------------------   67 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE--------------------   67 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCC--------------------
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccc--------------------
Confidence            34555555554 4444332  345555666555554444455556666666665555442                    


Q ss_pred             cccccCcccccCccCccEEEcc-CccCcccCCccccCCCCCCEEEccCccccccCch-hhcCCCCCCEEECcCccCCCCC
Q 001313          767 LHGQLKEGTFFNCLTLMILDLS-YNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPI-QLCRLNQLQLLDLSNNNLHGHI  844 (1102)
Q Consensus       767 l~~~i~~~~~~~~~~L~~L~Ls-~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~  844 (1102)
                         .++..+|.+++.++++++. .|.+....+..|.++++|+++++++|++....+. .+..++.+..+..+++.+....
T Consensus        68 ---~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~  144 (242)
T d1xwdc1          68 ---VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE  144 (242)
T ss_dssp             ---EECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEEC
T ss_pred             ---eeeccccccccccccccccccccccccccccccccccccccccchhhhccccccccccccccccccccccccccccc
Confidence               2334456666666666654 3556656666666677777777777766533222 2333455555555555554433


Q ss_pred             CcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCccc
Q 001313          845 PSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQ  924 (1102)
Q Consensus       845 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~  924 (1102)
                      +..|..+.                                                    ..++.+++++|+++...+..
T Consensus       145 ~~~~~~~~----------------------------------------------------~~l~~L~l~~n~l~~i~~~~  172 (242)
T d1xwdc1         145 RNSFVGLS----------------------------------------------------FESVILWLNKNGIQEIHNCA  172 (242)
T ss_dssp             TTSSTTSB----------------------------------------------------SSCEEEECCSSCCCEECTTT
T ss_pred             cccccccc----------------------------------------------------ccceeeeccccccccccccc
Confidence            33332221                                                    14566777777777544444


Q ss_pred             ccCCCcC-CEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcc
Q 001313          925 IGNLTKI-QTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA  985 (1102)
Q Consensus       925 ~~~l~~L-~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls  985 (1102)
                      |. .+++ +.+++++|+++...+..|.++++|+.|||++|+|+...+..|.+++.|+++++.
T Consensus       173 ~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         173 FN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             TT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             cc-chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            43 3444 344567777876656677888888888888888875545566666666665553

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=7.1e-17  Score=166.54  Aligned_cols=73  Identities=21%  Similarity=0.324  Sum_probs=44.1

Q ss_pred             CceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcc
Q 001313          907 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA  985 (1102)
Q Consensus       907 L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls  985 (1102)
                      |+.|++++|.+.+..  .++++++|++|||++|++++. |. |+++++|++|+|++|++++. | .+.++++|++|+++
T Consensus       153 L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l-~~-l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         153 LQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDI-SP-LASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLT  225 (227)
T ss_dssp             CCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEE
T ss_pred             cccccccccccccch--hhcccccceecccCCCccCCC-hh-hcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEee
Confidence            445555555554322  255666777777777777643 32 66667777777777777643 3 26667777777765

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.6e-17  Score=192.48  Aligned_cols=369  Identities=21%  Similarity=0.223  Sum_probs=189.9

Q ss_pred             CCCEEeCCCCCCCCcccchhhhhhcCCCCCcEEeCCCCcCCc----chhHhhhcCCCcCEEEcCCCcccCCCChhhhc--
Q 001313          102 QLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNN----SILSSLARLSSLTSLDLSANRLKGSIDIKELD--  175 (1102)
Q Consensus       102 ~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~--  175 (1102)
                      .|++||++++++++..-   .+.+..++++|+|+|++|.++.    .+...+..+++|++|||++|.++.. +...+.  
T Consensus         3 ~l~~ld~~~~~i~~~~~---~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~-~~~~l~~~   78 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARW---AELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDV-GVHCVLQG   78 (460)
T ss_dssp             EEEEEEEESCCCCHHHH---HHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHH-HHHHHHHT
T ss_pred             CCCEEEeeCCcCChHHH---HHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChH-HHHHHHHH
Confidence            45667777776654322   1234556777777777777763    3445566777777777777776421 122222  


Q ss_pred             ---cCCCCcEEEcCCCcCCcccccCCccccCCCCCcCEEEcCCCcCChhhhHhhhc-----cCCCcEEEccCCcCCCCCc
Q 001313          176 ---SLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLAR-----LSSLRSLLLYDNRLEGSID  247 (1102)
Q Consensus       176 ---~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~-----l~~L~~L~L~~n~l~~~~~  247 (1102)
                         ...+|++|++++|.+++......+..+..+++|++|++++|.++......+..     ...................
T Consensus        79 l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  158 (460)
T d1z7xw1          79 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC  158 (460)
T ss_dssp             TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred             HhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhh
Confidence               22467777887777765533223345667778888888887776543333321     1233344433333221100


Q ss_pred             ---hhhccCCCCCcEEecccCccCCcchhhhhc----cccccceeccccccccCc--hhhhhhcCCCCCCCEEeCCCCCc
Q 001313          248 ---VKEFDSLSNLEELDMSYNEIDNFEVPQACS----GLRKLSYLHLLRVGIRDG--SKLLQSMGSFPSLNTLDLSYNNF  318 (1102)
Q Consensus       248 ---~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~----~l~~L~~L~l~~~~~~~~--~~~~~~l~~l~~L~~L~Ls~n~~  318 (1102)
                         ...+.....++.++++++............    .......+....+.....  ......+...+.++.+++.+|.+
T Consensus       159 ~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~  238 (460)
T d1z7xw1         159 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL  238 (460)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccc
Confidence               112344566777777766554322221111    111233344443333221  22334455667777777777765


Q ss_pred             ccccc--ccccccccccccceeecccchhhhch--hhHHHhhccCCCCcEEecccCcCcCCccc-ccCCc-cCCCCccEE
Q 001313          319 TETVT--TTTQGFPHFKSLKELYMDDARIALNT--SFLQIIGESMPSIQYLSLSNSSVSNNSRT-LDQGL-CPLVHLQEL  392 (1102)
Q Consensus       319 ~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~l-~~l~~L~~L  392 (1102)
                      .....  ...........++.+++++|.+....  .....+.. .+.++.+++++|.+...... +...+ .....|+.+
T Consensus       239 ~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~-~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l  317 (460)
T d1z7xw1         239 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRA-KESLKELSLAGNELGDEGARLLCETLLEPGCQLESL  317 (460)
T ss_dssp             HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH-CTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred             cccccchhhcccccccccccccccccccccccccccccccccc-cccccccccccccccccccchhhccccccccccccc
Confidence            33211  11122333456677777666442211  12223333 67777777777766432111 00011 123467777


Q ss_pred             EcCCCcCCCCcch----hccCCCCCcEEEcCCCccccccC---Cccc-ccCCccCeeecCCccccccc---CccccccCC
Q 001313          393 HMADNDLRGSLPW----CLANMTSLRILDVSSNQLIGSIS---SSPL-IHLTSIEDLILSDNHFQIPI---SLEPLFNHS  461 (1102)
Q Consensus       393 ~L~~n~l~~~~p~----~l~~l~~L~~L~Ls~n~l~~~i~---~~~l-~~l~~L~~L~L~~n~l~~~~---~~~~l~~l~  461 (1102)
                      ++++|.+......    .+...++|++|++++|++.+...   ...+ ...+.|++|++++|+++...   -...+..++
T Consensus       318 ~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~  397 (460)
T d1z7xw1         318 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH  397 (460)
T ss_dssp             ECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCC
T ss_pred             cccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCC
Confidence            7777776654322    23445677777777777653210   1112 23455777777777765211   012344566


Q ss_pred             cceEEecCCCccch
Q 001313          462 RLKIFDAENNEINA  475 (1102)
Q Consensus       462 ~L~~L~l~~n~l~~  475 (1102)
                      +|++|++++|.+..
T Consensus       398 ~L~~L~Ls~N~i~~  411 (460)
T d1z7xw1         398 SLRELDLSNNCLGD  411 (460)
T ss_dssp             CCCEEECCSSSCCH
T ss_pred             CCCEEECCCCcCCH
Confidence            67777777776654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.67  E-value=5e-17  Score=162.46  Aligned_cols=159  Identities=19%  Similarity=0.180  Sum_probs=102.6

Q ss_pred             cCccEEEccCccCcccC-CccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCccccccccccccc
Q 001313          780 LTLMILDLSYNHLNGNI-PDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYN  858 (1102)
Q Consensus       780 ~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~  858 (1102)
                      +++++|+|++|+|++.+ +..|.++++|+.|+|++|++.+..+..+..+++|++|+|++|++++..|..|.++.      
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~------  102 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLH------  102 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCT------
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCC------
Confidence            45666666666665433 44556666777777777777666666666677777777777777666666665544      


Q ss_pred             CCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCC
Q 001313          859 NGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSH  938 (1102)
Q Consensus       859 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~  938 (1102)
                                                                     .|+.|+|++|+|++..|..|..+++|++|+|++
T Consensus       103 -----------------------------------------------~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~  135 (192)
T d1w8aa_         103 -----------------------------------------------QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS  135 (192)
T ss_dssp             -----------------------------------------------TCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred             -----------------------------------------------cccccccCCccccccCHHHhcCCcccccccccc
Confidence                                                           566777777777766666777777777777777


Q ss_pred             CCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCCc
Q 001313          939 NNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPE  995 (1102)
Q Consensus       939 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~  995 (1102)
                      |.+....+..+ -...++.+.+..|.+.+..|..+.   .++.++++.|.+.+..+.
T Consensus       136 N~~~~~~~~~~-~~~~l~~~~l~~~~~~c~~p~~l~---~~~l~~L~~n~l~C~~~~  188 (192)
T d1w8aa_         136 NPFNCNCHLAW-FAEWLRKKSLNGGAARCGAPSKVR---DVQIKDLPHSEFKCSSEN  188 (192)
T ss_dssp             CCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSSTTTT---TSBGGGSCTTTCCCCCC-
T ss_pred             cccccccchHH-HhhhhhhhcccCCCeEeCCChhhc---CCEeeecCHhhCcCCCCC
Confidence            77764432211 123455667777777776775543   455667788887765543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=4.5e-16  Score=160.42  Aligned_cols=141  Identities=21%  Similarity=0.265  Sum_probs=64.5

Q ss_pred             EEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccc
Q 001313          689 LFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLH  768 (1102)
Q Consensus       689 L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~  768 (1102)
                      ++++.+++++..  .+..+.+|+.|++.+|.++..  ..+..+++|++|++++|++++..| ...+++++.+++++|.++
T Consensus        24 ~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~~   98 (227)
T d1h6ua2          24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLK   98 (227)
T ss_dssp             HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCS
T ss_pred             HHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc-cccccccccccccccccc
Confidence            344444444322  233445555566665555532  235555555555555555543222 334445555555555443


Q ss_pred             cccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCC
Q 001313          769 GQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH  841 (1102)
Q Consensus       769 ~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  841 (1102)
                      . ++  .+.++++|+.++++++...+.  ..+...+.++.+.++++.+....  .+..+++|+.|++++|.++
T Consensus        99 ~-i~--~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~  164 (227)
T d1h6ua2          99 N-VS--AIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVS  164 (227)
T ss_dssp             C-CG--GGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCC
T ss_pred             c-cc--ccccccccccccccccccccc--chhccccchhhhhchhhhhchhh--hhccccccccccccccccc
Confidence            2 22  244445555555555444432  12333444455555554444221  2344445555555554443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=1e-15  Score=155.07  Aligned_cols=146  Identities=25%  Similarity=0.343  Sum_probs=99.7

Q ss_pred             ccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccc
Q 001313          776 FFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE  855 (1102)
Q Consensus       776 ~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~  855 (1102)
                      +..+++|++|++++|++++..  .++.+++|++|++++|++++ +| .+..+++|+.|++++|.+... + .+..+    
T Consensus        64 l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~~~-~-~l~~l----  133 (210)
T d1h6ta2          64 IQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI-N-GLVHL----  133 (210)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC-G-GGGGC----
T ss_pred             HhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-ccccccccccccccccccccc-c-ccccc----
Confidence            455666777777777766532  35667777777777777763 33 466777777777777766421 1 12111    


Q ss_pred             cccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEE
Q 001313          856 RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLN  935 (1102)
Q Consensus       856 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~  935 (1102)
                                                                       +.++.+++++|.+++  +..+..+++|++++
T Consensus       134 -------------------------------------------------~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~  162 (210)
T d1h6ta2         134 -------------------------------------------------PQLESLYLGNNKITD--ITVLSRLTKLDTLS  162 (210)
T ss_dssp             -------------------------------------------------TTCCEEECCSSCCCC--CGGGGGCTTCSEEE
T ss_pred             -------------------------------------------------ccccccccccccccc--cccccccccccccc
Confidence                                                             146777777777764  33567788888888


Q ss_pred             CCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEccc
Q 001313          936 LSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAY  986 (1102)
Q Consensus       936 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~  986 (1102)
                      +++|++++..|  ++++++|+.|+|++|+++. +| .+.++++|++|++++
T Consensus       163 l~~n~l~~i~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         163 LEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             ccccccccccc--ccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            88888885432  7888888888888888874 55 588888888888864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=4.6e-15  Score=148.86  Aligned_cols=142  Identities=30%  Similarity=0.432  Sum_probs=88.5

Q ss_pred             ccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccc
Q 001313          776 FFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE  855 (1102)
Q Consensus       776 ~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~  855 (1102)
                      +..+++|++|++++|++++..|  ++++++|++|++++|.+.. ++ .+.++++|+.|++++|.+....+  +..+    
T Consensus        58 l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~l~~~~~~~~~~--~~~l----  127 (199)
T d2omxa2          58 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLTLFNNQITDIDP--LKNL----  127 (199)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCCGG--GTTC----
T ss_pred             cccCCCcCcCccccccccCccc--ccCCccccccccccccccc-cc-ccccccccccccccccccccccc--cchh----
Confidence            4556666777777776665432  6667777777777776653 33 36667777777777666653211  1111    


Q ss_pred             cccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEE
Q 001313          856 RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLN  935 (1102)
Q Consensus       856 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~  935 (1102)
                                                                       +.|+.|++++|++.. +| .+..+++|+.|+
T Consensus       128 -------------------------------------------------~~L~~L~l~~n~l~~-~~-~l~~~~~L~~L~  156 (199)
T d2omxa2         128 -------------------------------------------------TNLNRLELSSNTISD-IS-ALSGLTSLQQLN  156 (199)
T ss_dssp             -------------------------------------------------TTCSEEECCSSCCCC-CG-GGTTCTTCSEEE
T ss_pred             -------------------------------------------------hhhHHhhhhhhhhcc-cc-cccccccccccc
Confidence                                                             146667777777653 22 466777777777


Q ss_pred             CCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEE
Q 001313          936 LSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVF  982 (1102)
Q Consensus       936 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l  982 (1102)
                      +++|++++..  .|+++++|+.|++++|+++. +| .+..+++|+.|
T Consensus       157 l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         157 FSSNQVTDLK--PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             CCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             cccccccCCc--cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            7777777542  36777777777777777774 33 46667776654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=7.5e-15  Score=148.64  Aligned_cols=148  Identities=29%  Similarity=0.444  Sum_probs=102.8

Q ss_pred             CCCCCEEeCCCCCCCCcccchhhhhhcCCCCCcEEeCCCCcCCcchhHhhhcCCCcCEEEcCCCcccCCCChhhhccCCC
Q 001313          100 FQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRD  179 (1102)
Q Consensus       100 ~~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~  179 (1102)
                      +..|++|++++|.++...      .+..+++|++|++++|.+++ ++ .++++++|++|++++|++++   ...+..+++
T Consensus        45 L~~L~~L~l~~~~i~~l~------~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~~---l~~l~~l~~  113 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ------GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVKD---LSSLKDLKK  113 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT------TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC---GGGGTTCTT
T ss_pred             hcCccEEECcCCCCCCch------hHhhCCCCCEEeCCCccccC-cc-ccccCccccccccccccccc---ccccccccc
Confidence            456777777777766442      35667777778887777775 22 36777778888887777763   235777777


Q ss_pred             CcEEEcCCCcCCcccccCCccccCCCCCcCEEEcCCCcCChhhhHhhhccCCCcEEEccCCcCCCCCchhhccCCCCCcE
Q 001313          180 LEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEE  259 (1102)
Q Consensus       180 L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~  259 (1102)
                      |++|++++|.+...      ..+.++++++++++++|.+++  +..+.++++|+++++++|++.+ ++  .+.++++|++
T Consensus       114 L~~L~l~~~~~~~~------~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~--~l~~l~~L~~  182 (210)
T d1h6ta2         114 LKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IV--PLAGLTKLQN  182 (210)
T ss_dssp             CCEEECTTSCCCCC------GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CG--GGTTCTTCCE
T ss_pred             cccccccccccccc------ccccccccccccccccccccc--cccccccccccccccccccccc-cc--cccCCCCCCE
Confidence            88888777776554      456777777888887777764  3356677778888888877763 33  4677778888


Q ss_pred             EecccCccCC
Q 001313          260 LDMSYNEIDN  269 (1102)
Q Consensus       260 L~L~~n~l~~  269 (1102)
                      |++++|++++
T Consensus       183 L~Ls~N~i~~  192 (210)
T d1h6ta2         183 LYLSKNHISD  192 (210)
T ss_dssp             EECCSSCCCB
T ss_pred             EECCCCCCCC
Confidence            8888777653

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.59  E-value=1.2e-14  Score=145.66  Aligned_cols=150  Identities=26%  Similarity=0.427  Sum_probs=110.1

Q ss_pred             CCCCCCEEeCCCCCCCCcccchhhhhhcCCCCCcEEeCCCCcCCcchhHhhhcCCCcCEEEcCCCcccCCCChhhhccCC
Q 001313           99 PFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLR  178 (1102)
Q Consensus        99 ~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~  178 (1102)
                      .++++++|+++++.++..      +.++.+++|++|++++|.+++..  .++++++|++|++++|.+...   ..+.+++
T Consensus        38 ~l~~l~~L~l~~~~i~~l------~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~~~---~~l~~l~  106 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSI------DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADI---TPLANLT  106 (199)
T ss_dssp             HHTTCCEEECTTSCCCCC------TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC---GGGTTCT
T ss_pred             HhcCCCEEECCCCCCCCc------cccccCCCcCcCccccccccCcc--cccCCcccccccccccccccc---ccccccc
Confidence            456777788887777643      23667788888888888877632  378888888888888877532   3577888


Q ss_pred             CCcEEEcCCCcCCcccccCCccccCCCCCcCEEEcCCCcCChhhhHhhhccCCCcEEEccCCcCCCCCchhhccCCCCCc
Q 001313          179 DLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLE  258 (1102)
Q Consensus       179 ~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~  258 (1102)
                      +|++|+++++.....      ..+.++++|++|++++|++..  ...+..+++|++|++.+|.+++ ++  .++++++|+
T Consensus       107 ~L~~L~l~~~~~~~~------~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~-l~--~l~~l~~L~  175 (199)
T d2omxa2         107 NLTGLTLFNNQITDI------DPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTD-LK--PLANLTTLE  175 (199)
T ss_dssp             TCSEEECCSSCCCCC------GGGTTCTTCSEEECCSSCCCC--CGGGTTCTTCSEEECCSSCCCC-CG--GGTTCTTCC
T ss_pred             ccccccccccccccc------cccchhhhhHHhhhhhhhhcc--cccccccccccccccccccccC-Cc--cccCCCCCC
Confidence            888888888877665      356778888888888888764  2357788888888888888763 33  577888888


Q ss_pred             EEecccCccCCc
Q 001313          259 ELDMSYNEIDNF  270 (1102)
Q Consensus       259 ~L~L~~n~l~~~  270 (1102)
                      +|++++|++++.
T Consensus       176 ~L~ls~N~i~~i  187 (199)
T d2omxa2         176 RLDISSNKVSDI  187 (199)
T ss_dssp             EEECCSSCCCCC
T ss_pred             EEECCCCCCCCC
Confidence            888888887653

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.4e-14  Score=152.27  Aligned_cols=227  Identities=19%  Similarity=0.248  Sum_probs=123.6

Q ss_pred             cEEeCCCCcCCcchhHhhhcCCCcCEEEcCCCcccCCCChhhhccCCCCcEEEcCCCcCCcccccCCccccCCCCCcCEE
Q 001313          132 KMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVF  211 (1102)
Q Consensus       132 ~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L  211 (1102)
                      +.||++++.+.......+.. .....+.++.......  ........+|++|+++++.+.....   ...+.++++|++|
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~--~~~~~~~~~L~~LdLs~~~i~~~~l---~~l~~~c~~L~~L   76 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQP--LAEHFSPFRVQHMDLSNSVIEVSTL---HGILSQCSKLQNL   76 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSC--CCSCCCCBCCCEEECTTCEECHHHH---HHHHTTBCCCSEE
T ss_pred             CEEECCCCCCCchHHHHHHh-ccceEeeccccccccc--hhhhccCCCCCEEECCCCccCHHHH---HHHHHhCCCcccc
Confidence            57788887765333333322 2455666666554422  1223344567777777666554322   1335566777777


Q ss_pred             EcCCCcCChhhhHhhhccCCCcEEEccCCcCCCCCch-hhccCCCCCcEEecccCc-cCCcchhhhhccccccceecccc
Q 001313          212 DLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDV-KEFDSLSNLEELDMSYNE-IDNFEVPQACSGLRKLSYLHLLR  289 (1102)
Q Consensus       212 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~l~~  289 (1102)
                      ++++|.+++..+..++++++|++|++++|.-.+.... ..+..+++|++|+++++. +++.                   
T Consensus        77 ~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~-------------------  137 (284)
T d2astb2          77 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK-------------------  137 (284)
T ss_dssp             ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH-------------------
T ss_pred             cccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccc-------------------
Confidence            7777766666666666667777777766532111111 122455666666666642 2210                   


Q ss_pred             ccccCchhhhhhc-CCCCCCCEEeCCCCCccccccccccccccccccceeecccchhhhc-hhhHHHhhccCCCCcEEec
Q 001313          290 VGIRDGSKLLQSM-GSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALN-TSFLQIIGESMPSIQYLSL  367 (1102)
Q Consensus       290 ~~~~~~~~~~~~l-~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~l~~L~~L~L  367 (1102)
                             .+...+ ...++|+.|+++++..                           ... ..+...... +|+|++|++
T Consensus       138 -------~~~~~~~~~~~~L~~L~l~~~~~---------------------------~i~~~~l~~l~~~-~~~L~~L~L  182 (284)
T d2astb2         138 -------HVQVAVAHVSETITQLNLSGYRK---------------------------NLQKSDLSTLVRR-CPNLVHLDL  182 (284)
T ss_dssp             -------HHHHHHHHSCTTCCEEECCSCGG---------------------------GSCHHHHHHHHHH-CTTCSEEEC
T ss_pred             -------cchhhhcccccccchhhhccccc---------------------------ccccccccccccc-ccccccccc
Confidence                   111111 1234555555554321                           111 222222233 788888888


Q ss_pred             ccCc-CcCCcccccCCccCCCCccEEEcCCC-cCCCCcchhccCCCCCcEEEcCCC
Q 001313          368 SNSS-VSNNSRTLDQGLCPLVHLQELHMADN-DLRGSLPWCLANMTSLRILDVSSN  421 (1102)
Q Consensus       368 ~~~~-~~~~~~~~~~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~n  421 (1102)
                      ++|. +++....   .+..+++|++|++++| .+++.....++++++|++|+++++
T Consensus       183 ~~~~~itd~~~~---~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         183 SDSVMLKNDCFQ---EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TTCTTCCGGGGG---GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccCCCchhhh---hhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            8764 4433332   5667788888888875 455555556777778888887776

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=5.4e-14  Score=149.57  Aligned_cols=250  Identities=20%  Similarity=0.202  Sum_probs=154.8

Q ss_pred             CEEeCCCCCCCCcccchhhhhhcCCCCCcEEeCCCCcCCcchhHhhhcCCCcCEEEcCCCcccCCCChhhhccCCCCcEE
Q 001313          104 ESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKL  183 (1102)
Q Consensus       104 ~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L  183 (1102)
                      ++||++++.+.....    ..+.. ..+..+.++....... ........+|++||+++|.+........+.++++|++|
T Consensus         3 ~~lDLs~~~l~~~~l----~~l~~-~~~~~lrl~~~~~~~~-~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L   76 (284)
T d2astb2           3 QTLDLTGKNLHPDVT----GRLLS-QGVIAFRCPRSFMDQP-LAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL   76 (284)
T ss_dssp             SEEECTTCBCCHHHH----HHHHH-TTCSEEECTTCEECSC-CCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             CEEECCCCCCCchHH----HHHHh-ccceEeeccccccccc-hhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccc
Confidence            589999887753221    12211 2456777776655432 23344567999999999988644333456889999999


Q ss_pred             EcCCCcCCcccccCCccccCCCCCcCEEEcCCC-cCChhhhH-hhhccCCCcEEEccCCc-CCCCCchhhc-cCCCCCcE
Q 001313          184 NIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGN-LFNNSILS-SLARLSSLRSLLLYDNR-LEGSIDVKEF-DSLSNLEE  259 (1102)
Q Consensus       184 ~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~l-~~l~~L~~  259 (1102)
                      ++++|.+.+...    ..+.++++|++|++++| .+++.... ....+++|++|++++|. ++.......+ ..+++|++
T Consensus        77 ~L~~~~l~~~~~----~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~  152 (284)
T d2astb2          77 SLEGLRLSDPIV----NTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQ  152 (284)
T ss_dssp             ECTTCBCCHHHH----HHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCE
T ss_pred             cccccCCCcHHH----HHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccch
Confidence            999999876654    67889999999999996 56654333 34678999999999975 3211111123 34578999


Q ss_pred             EecccCc--cCCcchhhhhccccccceeccccccccCchhhhhhcCCCCCCCEEeCCCCCccccccccccccccccccce
Q 001313          260 LDMSYNE--IDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKE  337 (1102)
Q Consensus       260 L~L~~n~--l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~  337 (1102)
                      |+++++.  +++                          ..+......+|+|++|++++|...+.                
T Consensus       153 L~l~~~~~~i~~--------------------------~~l~~l~~~~~~L~~L~L~~~~~itd----------------  190 (284)
T d2astb2         153 LNLSGYRKNLQK--------------------------SDLSTLVRRCPNLVHLDLSDSVMLKN----------------  190 (284)
T ss_dssp             EECCSCGGGSCH--------------------------HHHHHHHHHCTTCSEEECTTCTTCCG----------------
T ss_pred             hhhccccccccc--------------------------ccccccccccccccccccccccCCCc----------------
Confidence            9998753  222                          12223334578888888887653211                


Q ss_pred             eecccchhhhchhhHHHhhccCCCCcEEecccCc-CcCCcccccCCccCCCCccEEEcCCCcCCCCcchhccCCCCCcEE
Q 001313          338 LYMDDARIALNTSFLQIIGESMPSIQYLSLSNSS-VSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRIL  416 (1102)
Q Consensus       338 L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  416 (1102)
                                  .....+.. +++|++|++++|. ++.....   .++++++|+.|++++|--.+.++.....+++|+  
T Consensus       191 ------------~~~~~l~~-~~~L~~L~L~~C~~i~~~~l~---~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~--  252 (284)
T d2astb2         191 ------------DCFQEFFQ-LNYLQHLSLSRCYDIIPETLL---ELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ--  252 (284)
T ss_dssp             ------------GGGGGGGG-CTTCCEEECTTCTTCCGGGGG---GGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE--
T ss_pred             ------------hhhhhhcc-cCcCCEEECCCCCCCChHHHH---HHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc--
Confidence                        11112222 6677777777753 3332222   466778888888887732223333334555554  


Q ss_pred             EcCCCccc
Q 001313          417 DVSSNQLI  424 (1102)
Q Consensus       417 ~Ls~n~l~  424 (1102)
                       +..+.++
T Consensus       253 -i~~~~ls  259 (284)
T d2astb2         253 -INCSHFT  259 (284)
T ss_dssp             -ESCCCSC
T ss_pred             -ccCccCC
Confidence             3444444

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.1e-13  Score=129.41  Aligned_cols=79  Identities=19%  Similarity=0.182  Sum_probs=49.0

Q ss_pred             CCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCc-ccccCCCcCCEEeCCCCcCcccC---chhhhcCCCCCE
Q 001313          906 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIP-STFSNLRNIESLDLSYNKLSWKI---PYQLVELNTLAV  981 (1102)
Q Consensus       906 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~---p~~l~~l~~L~~  981 (1102)
                      .|+.|++++|+++...+..+..+++|+.|+|++|+|+.... ..+..+++|++|++++|.++...   +..+..+++|++
T Consensus        64 ~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~  143 (162)
T d1a9na_          64 RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRV  143 (162)
T ss_dssp             SCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSE
T ss_pred             chhhhhcccccccCCCccccccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCe
Confidence            35555555555554434445566777777777777764322 35667777888888888776322   124667777777


Q ss_pred             EEc
Q 001313          982 FSV  984 (1102)
Q Consensus       982 l~l  984 (1102)
                      ||-
T Consensus       144 LD~  146 (162)
T d1a9na_         144 LDF  146 (162)
T ss_dssp             ETT
T ss_pred             eCC
Confidence            763

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.37  E-value=5.1e-13  Score=146.93  Aligned_cols=256  Identities=16%  Similarity=0.181  Sum_probs=138.7

Q ss_pred             CCCCCCCCEEeCCCCCCCCcccchhhhhhcCCCCCcEEeCCCCcCCc----------chhHhhhcCCCcCEEEcCCCccc
Q 001313           97 FTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNN----------SILSSLARLSSLTSLDLSANRLK  166 (1102)
Q Consensus        97 ~~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~----------~~~~~l~~l~~L~~L~Ls~n~l~  166 (1102)
                      +.....|++|+|++|.+...........+...++|+.|+++++....          .+...+..+++|++|+|++|.+.
T Consensus        27 L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  106 (344)
T d2ca6a1          27 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG  106 (344)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred             HhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccc
Confidence            45567778888887776544333333456667778888877664331          13344556777778888777765


Q ss_pred             CCCCh----hhhccCCCCcEEEcCCCcCCcccccCCcc---------ccCCCCCcCEEEcCCCcCChh----hhHhhhcc
Q 001313          167 GSIDI----KELDSLRDLEKLNIGRNMIDKFVVSKGPK---------RLSRLNNLKVFDLSGNLFNNS----ILSSLARL  229 (1102)
Q Consensus       167 ~~~~~----~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~---------~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l  229 (1102)
                      .. ..    ..+...++|++|++++|.+..........         .....+.|+.+++++|.++..    +...+...
T Consensus       107 ~~-~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~  185 (344)
T d2ca6a1         107 PT-AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH  185 (344)
T ss_dssp             TT-THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred             cc-cccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhh
Confidence            32 22    23345677777777777654321100000         113456677777777766542    33345556


Q ss_pred             CCCcEEEccCCcCCCCC----chhhccCCCCCcEEecccCccCCcchhhhhccccccceeccccccccCchhhhhhcCCC
Q 001313          230 SSLRSLLLYDNRLEGSI----DVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSF  305 (1102)
Q Consensus       230 ~~L~~L~L~~n~l~~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l  305 (1102)
                      +.|+.|++++|.+....    ....+..+++|++|++++|.++....                       ..+...+..+
T Consensus       186 ~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~-----------------------~~L~~~l~~~  242 (344)
T d2ca6a1         186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS-----------------------SALAIALKSW  242 (344)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHH-----------------------HHHHHHGGGC
T ss_pred             hhhcccccccccccccccccchhhhhcchhhhccccccccccccccc-----------------------cccccccccc
Confidence            67777777777654210    11234556677777777766542211                       2233445566


Q ss_pred             CCCCEEeCCCCCccccccccccccccccccceeecccchhhhchhhHHHhhc-cCCCCcEEecccCcCcCCc-ccccCCc
Q 001313          306 PSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGE-SMPSIQYLSLSNSSVSNNS-RTLDQGL  383 (1102)
Q Consensus       306 ~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~-~~~~~~l  383 (1102)
                      ++|++|++++|.+.....                         ..+...+.. ..+.|++|++++|.+.... ..+...+
T Consensus       243 ~~L~~L~Ls~n~i~~~g~-------------------------~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l  297 (344)
T d2ca6a1         243 PNLRELGLNDCLLSARGA-------------------------AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI  297 (344)
T ss_dssp             TTCCEEECTTCCCCHHHH-------------------------HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH
T ss_pred             ccchhhhhhcCccCchhh-------------------------HHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHH
Confidence            677777777766542211                         111122211 1356777777776654321 1111122


Q ss_pred             -cCCCCccEEEcCCCcCCC
Q 001313          384 -CPLVHLQELHMADNDLRG  401 (1102)
Q Consensus       384 -~~l~~L~~L~L~~n~l~~  401 (1102)
                       .+++.|+.|+|++|.+..
T Consensus       298 ~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         298 DEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHCTTCCEEECTTSBSCT
T ss_pred             HccCCCCCEEECCCCcCCC
Confidence             245677777777777754

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.37  E-value=1.7e-12  Score=117.79  Aligned_cols=80  Identities=31%  Similarity=0.412  Sum_probs=33.0

Q ss_pred             ceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccC-chhhhcCCCCCEEEccc
Q 001313          908 SGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKI-PYQLVELNTLAVFSVAY  986 (1102)
Q Consensus       908 ~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~l~ls~  986 (1102)
                      ++||+++|+++ .+|+.|+.+++|++|++++|.|++. | .++.+++|++|++++|+++... ...+..+++|+++++++
T Consensus        23 ~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~   99 (124)
T d1dcea3          23 THLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG   99 (124)
T ss_dssp             CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred             CEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCC
Confidence            33334444333 2333344444444444444444422 2 2444444444444444444221 12344444444444444


Q ss_pred             CcCc
Q 001313          987 NNLS  990 (1102)
Q Consensus       987 N~l~  990 (1102)
                      |+++
T Consensus       100 N~i~  103 (124)
T d1dcea3         100 NSLC  103 (124)
T ss_dssp             SGGG
T ss_pred             CcCC
Confidence            4443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.37  E-value=4.6e-13  Score=147.26  Aligned_cols=98  Identities=16%  Similarity=0.118  Sum_probs=54.9

Q ss_pred             hhhhcCCCCCcEEeCCCCcCCcc----hhHhhhcCCCcCEEEcCCCcccCCC---C------hhhhccCCCCcEEEcCCC
Q 001313          122 LERLSRLSNLKMLNLVGNLFNNS----ILSSLARLSSLTSLDLSANRLKGSI---D------IKELDSLRDLEKLNIGRN  188 (1102)
Q Consensus       122 ~~~l~~l~~L~~L~Ls~n~~~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~---~------~~~l~~l~~L~~L~Ls~n  188 (1102)
                      ...+.+...|+.|+|++|.+...    +...+...++|+.|+++++......   +      ...+..+++|++|++++|
T Consensus        24 ~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n  103 (344)
T d2ca6a1          24 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN  103 (344)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred             HHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccc
Confidence            35567788888888888887643    3344556788888888876543210   0      122334555666666666


Q ss_pred             cCCcccccCCccccCCCCCcCEEEcCCCcCC
Q 001313          189 MIDKFVVSKGPKRLSRLNNLKVFDLSGNLFN  219 (1102)
Q Consensus       189 ~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~  219 (1102)
                      .+...........+..+++|++|++++|.+.
T Consensus       104 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~  134 (344)
T d2ca6a1         104 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG  134 (344)
T ss_dssp             CCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             ccccccccchhhhhcccccchheeccccccc
Confidence            5544322222223344555555555555543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.35  E-value=2.2e-12  Score=116.99  Aligned_cols=103  Identities=24%  Similarity=0.314  Sum_probs=61.3

Q ss_pred             CEEeCCCCCCCCcccchhhhhhcCCCCCcEEeCCCCcCCcchhHhhhcCCCcCEEEcCCCcccCCCChhhhccCCCCcEE
Q 001313          104 ESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKL  183 (1102)
Q Consensus       104 ~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L  183 (1102)
                      |+|||++|.++...      .++.+++|++|++++|.++ .+|+.++.+++|++|++++|.++..   ..+.++++|++|
T Consensus         1 R~L~Ls~n~l~~l~------~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l---~~~~~l~~L~~L   70 (124)
T d1dcea3           1 RVLHLAHKDLTVLC------HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV---DGVANLPRLQEL   70 (124)
T ss_dssp             SEEECTTSCCSSCC------CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC---GGGTTCSSCCEE
T ss_pred             CEEEcCCCCCCCCc------ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc---CccccccccCeE
Confidence            56777777776442      2556666777777777766 3555666677777777777766532   245666666666


Q ss_pred             EcCCCcCCcccccCCccccCCCCCcCEEEcCCCcCC
Q 001313          184 NIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFN  219 (1102)
Q Consensus       184 ~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~  219 (1102)
                      ++++|++.....   ...+..+++|++|++++|.++
T Consensus        71 ~l~~N~i~~~~~---~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          71 LLCNNRLQQSAA---IQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             ECCSSCCCSSST---TGGGGGCTTCCEEECTTSGGG
T ss_pred             ECCCCccCCCCC---chhhcCCCCCCEEECCCCcCC
Confidence            666666554421   133455555666666555554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=9.4e-13  Score=125.95  Aligned_cols=111  Identities=23%  Similarity=0.233  Sum_probs=62.1

Q ss_pred             cCCCcCEEEcCCCcccCCCChhhhccCCCCcEEEcCCCcCCcccccCCccccCCCCCcCEEEcCCCcCChhhhHhhhccC
Q 001313          151 RLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLS  230 (1102)
Q Consensus       151 ~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~  230 (1102)
                      ++..|++|||++|+|+. ++ ..+..+++|++|++++|.+..+      +.+..+++|++|++++|+++...+..+..++
T Consensus        16 n~~~lr~L~L~~n~I~~-i~-~~~~~l~~L~~L~Ls~N~i~~l------~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~   87 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPV-IE-NLGATLDQFDAIDFSDNEIRKL------DGFPLLRRLKTLLVNNNRICRIGEGLDQALP   87 (162)
T ss_dssp             CTTSCEEEECTTSCCCS-CC-CGGGGTTCCSEEECCSSCCCEE------CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred             CcCcCcEEECCCCCCCc-cC-ccccccccCCEEECCCCCCCcc------CCcccCcchhhhhcccccccCCCcccccccc
Confidence            34444445555554442 11 2234455555555555555443      2455666666666666666655444556667


Q ss_pred             CCcEEEccCCcCCCCCchhhccCCCCCcEEecccCccCC
Q 001313          231 SLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDN  269 (1102)
Q Consensus       231 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~  269 (1102)
                      +|++|++++|.+...-....+..+++|++|++++|.++.
T Consensus        88 ~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~  126 (162)
T d1a9na_          88 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN  126 (162)
T ss_dssp             TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG
T ss_pred             ccccceeccccccccccccccccccccchhhcCCCcccc
Confidence            777777777766532222456667777777777776643

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=2.9e-11  Score=114.53  Aligned_cols=110  Identities=16%  Similarity=0.230  Sum_probs=75.9

Q ss_pred             CceEECCCCCCCCCCcccccCCCcCCEEECCCC-CCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcc
Q 001313          907 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHN-NLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA  985 (1102)
Q Consensus       907 L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls  985 (1102)
                      .+.++.+++.+. .+|..+..+++|++|++++| .|+.+.+.+|.++++|+.|+|++|+|+...|..|..+++|++|+|+
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            345777777766 45666777777777777655 4776667777777777777777777777667777777777777777


Q ss_pred             cCcCcccCCccccccCCCCccccCCCCCCCCCC
Q 001313          986 YNNLSGKIPERAAQFATFNESSYEGNPFLCGPP 1018 (1102)
Q Consensus       986 ~N~l~~~~p~~~~~~~~~~~~~~~gN~~lC~~~ 1018 (1102)
                      +|+|+...+. .-+...+..+.+.+||+.|+|.
T Consensus        89 ~N~l~~l~~~-~~~~~~l~~L~L~~Np~~C~C~  120 (156)
T d2ifga3          89 FNALESLSWK-TVQGLSLQELVLSGNPLHCSCA  120 (156)
T ss_dssp             SSCCSCCCST-TTCSCCCCEEECCSSCCCCCGG
T ss_pred             CCCCcccChh-hhccccccccccCCCcccCCch
Confidence            7777744333 2233345666777777777664

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.16  E-value=6.7e-13  Score=131.90  Aligned_cols=130  Identities=22%  Similarity=0.287  Sum_probs=86.3

Q ss_pred             CCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCC
Q 001313          796 IPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGG  875 (1102)
Q Consensus       796 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  875 (1102)
                      +|..+..+++|++|+|++|+++. ++ .+..+++|+.|+|++|.++. +|..+...                        
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~------------------------   92 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVA------------------------   92 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECS-CSSHHHHH------------------------
T ss_pred             hhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhccccccc-cccccccc------------------------
Confidence            34556777788888888888773 44 47777888888888887763 33221111                        


Q ss_pred             ccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCc-ccccCCCc
Q 001313          876 MDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIP-STFSNLRN  954 (1102)
Q Consensus       876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~  954 (1102)
                                                   +.|+.|++++|+++. + +.+..+++|++|+|++|+|+.... ..+..+++
T Consensus        93 -----------------------------~~L~~L~l~~N~i~~-l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~  141 (198)
T d1m9la_          93 -----------------------------DTLEELWISYNQIAS-L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDK  141 (198)
T ss_dssp             -----------------------------HHCCEEECSEEECCC-H-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTT
T ss_pred             -----------------------------ccccccccccccccc-c-ccccccccccccccccchhccccccccccCCCc
Confidence                                         146778888887774 2 346777888888888888874322 45777888


Q ss_pred             CCEEeCCCCcCcccCchh----------hhcCCCCCEEE
Q 001313          955 IESLDLSYNKLSWKIPYQ----------LVELNTLAVFS  983 (1102)
Q Consensus       955 L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~l~  983 (1102)
                      |+.|+|++|++....+..          +..+++|+.||
T Consensus       142 L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         142 LEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             CSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            888888888776544332          45567777765

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.06  E-value=2.5e-12  Score=127.65  Aligned_cols=127  Identities=30%  Similarity=0.310  Sum_probs=76.2

Q ss_pred             CcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCcccc
Q 001313          679 SLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIE  758 (1102)
Q Consensus       679 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~  758 (1102)
                      .+..+++|++|++++|+++ .++ .+..+++|+.|++++|.++. +|..+..+++|+.|++++|+++             
T Consensus        43 sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~-------------  106 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIA-------------  106 (198)
T ss_dssp             HHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECC-------------
T ss_pred             HHhcccccceeECcccCCC-Ccc-cccCCccccChhhccccccc-cccccccccccccccccccccc-------------
Confidence            4445555555555555554 222 24455555555555555542 2332333344555555555443             


Q ss_pred             EEEccCcccccccCcccccCccCccEEEccCccCcccCC-ccccCCCCCCEEEccCccccccCchh----------hcCC
Q 001313          759 QVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIP-DRVDGLSQLSYLILAHNNLEGEVPIQ----------LCRL  827 (1102)
Q Consensus       759 ~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~----------~~~l  827 (1102)
                                . ++  .+.++++|+.|++++|+++.... ..+..+++|+.|+|++|++....+..          +..+
T Consensus       107 ----------~-l~--~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~l  173 (198)
T d1m9la_         107 ----------S-LS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL  173 (198)
T ss_dssp             ----------C-HH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHC
T ss_pred             ----------c-cc--cccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHC
Confidence                      2 32  46677888888888888875322 46788888999999998887544332          6678


Q ss_pred             CCCCEEE
Q 001313          828 NQLQLLD  834 (1102)
Q Consensus       828 ~~L~~L~  834 (1102)
                      ++|+.||
T Consensus       174 p~L~~LD  180 (198)
T d1m9la_         174 PNLKKLD  180 (198)
T ss_dssp             SSCCEES
T ss_pred             CCcCEeC
Confidence            9999987

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=5e-10  Score=105.82  Aligned_cols=105  Identities=21%  Similarity=0.163  Sum_probs=57.3

Q ss_pred             cCeeeccCccCcccCCCCcCCCCCCcEEEccCC-cCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEcc
Q 001313          662 LIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNN-SLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDIS  740 (1102)
Q Consensus       662 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls  740 (1102)
                      .+.++.+++.+. ..|..+..+++|++|++++| .++...+..|.++++|+.|++++|+++.+.+.+|..+++|++|+|+
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            344555555544 33445555666666666544 3554444556666666666666666665556666666666666666


Q ss_pred             CcccccCCCCCCCCccccEEEccCccc
Q 001313          741 DNNISGSLPSCYDFVCIEQVHLSKNML  767 (1102)
Q Consensus       741 ~n~l~~~~p~~~~~~~L~~L~l~~n~l  767 (1102)
                      +|+++...+..+...+++.|++++|.+
T Consensus        89 ~N~l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          89 FNALESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             CCCCcccChhhhccccccccccCCCcc
Confidence            666653333333333444444444443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=1.6e-07  Score=88.86  Aligned_cols=77  Identities=26%  Similarity=0.185  Sum_probs=43.4

Q ss_pred             CceEECCCCCCCCC--CcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCch-------hhhcCC
Q 001313          907 LSGLDLSCNRLIGH--IPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPY-------QLVELN  977 (1102)
Q Consensus       907 L~~L~Ls~N~l~~~--ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-------~l~~l~  977 (1102)
                      |++|+|++|+++..  ++..+..+++|+.|||++|.|+...+-.+.....|+.|++++|.++.....       .+..++
T Consensus        67 L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P  146 (162)
T d1koha1          67 LLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFP  146 (162)
T ss_dssp             CCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTST
T ss_pred             CCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCC
Confidence            33444444444332  123355566777777777777754443444445677777777777654432       245567


Q ss_pred             CCCEEE
Q 001313          978 TLAVFS  983 (1102)
Q Consensus       978 ~L~~l~  983 (1102)
                      +|++||
T Consensus       147 ~L~~LD  152 (162)
T d1koha1         147 KLLRLD  152 (162)
T ss_dssp             TCCEET
T ss_pred             CCCEEC
Confidence            777775

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=2.4e-07  Score=87.60  Aligned_cols=70  Identities=24%  Similarity=0.168  Sum_probs=35.1

Q ss_pred             hHhhhcCCCcCEEEcCCCcccCCCC-hhhhccCCCCcEEEcCCCcCCcccccCCccccCCCCCcCEEEcCCCcCC
Q 001313          146 LSSLARLSSLTSLDLSANRLKGSID-IKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFN  219 (1102)
Q Consensus       146 ~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~  219 (1102)
                      +....++++|++|+|++|+++...+ ...+..+++|++|++++|.++....    -...+..+|++|++++|.+.
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~----l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE----LDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGG----HHHHTTCCCSSCCCTTSTTS
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchh----hhhhhccccceeecCCCCcC
Confidence            3334556667777777776654211 1234455566666666665554422    11122334555555555554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.90  E-value=9.8e-06  Score=76.63  Aligned_cols=93  Identities=11%  Similarity=0.120  Sum_probs=40.3

Q ss_pred             hhhcCCCcCEEEcCCCcccCC--C-ChhhhccCCCCcEEEcCCCcCCcccccCCccccCCCCCcCEEEcCCCcCCh----
Q 001313          148 SLARLSSLTSLDLSANRLKGS--I-DIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNN----  220 (1102)
Q Consensus       148 ~l~~l~~L~~L~Ls~n~l~~~--~-~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~----  220 (1102)
                      .+...++|++|+|++|.+...  . -...+...+.|++|++++|.+...........+...+.|++|++++|.+..    
T Consensus        39 ~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~  118 (167)
T d1pgva_          39 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ  118 (167)
T ss_dssp             HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred             HHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHH
Confidence            344445555555555544311  0 011223344444444444444433222222345555556666665553321    


Q ss_pred             ---hhhHhhhccCCCcEEEccCC
Q 001313          221 ---SILSSLARLSSLRSLLLYDN  240 (1102)
Q Consensus       221 ---~~~~~l~~l~~L~~L~L~~n  240 (1102)
                         .+...+...+.|+.|+++.+
T Consensus       119 ~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_         119 VEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHHHHHhCCCccEeeCcCC
Confidence               12333444455555555443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.65  E-value=3e-05  Score=73.15  Aligned_cols=68  Identities=15%  Similarity=0.192  Sum_probs=34.1

Q ss_pred             ccCCCCCcCEEEcCCCcCChh----hhHhhhccCCCcEEEccCCcCCCCCc---hhhccCCCCCcEEecccCccC
Q 001313          201 RLSRLNNLKVFDLSGNLFNNS----ILSSLARLSSLRSLLLYDNRLEGSID---VKEFDSLSNLEELDMSYNEID  268 (1102)
Q Consensus       201 ~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~l~~l~~L~~L~L~~n~l~  268 (1102)
                      .+...+.|++|++++|.++..    +...+...+.|++|++++|.+.....   ...+...+.|++|++++|.+.
T Consensus        39 ~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          39 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSC
T ss_pred             HHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCC
Confidence            344445555555555555432    22233444566666666665542111   123455566777777666544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.52  E-value=6.4e-05  Score=70.83  Aligned_cols=114  Identities=15%  Similarity=0.129  Sum_probs=46.3

Q ss_pred             CCCCCcEEeCCC-CcCCc----chhHhhhcCCCcCEEEcCCCcccCCCC---hhhhccCCCCcEEEcCCCcCCcccccCC
Q 001313          127 RLSNLKMLNLVG-NLFNN----SILSSLARLSSLTSLDLSANRLKGSID---IKELDSLRDLEKLNIGRNMIDKFVVSKG  198 (1102)
Q Consensus       127 ~l~~L~~L~Ls~-n~~~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~---~~~l~~l~~L~~L~Ls~n~~~~~~~~~~  198 (1102)
                      +.+.|++|+|++ +.++.    .+..++...++|++|++++|.+.....   ...+...+.++.+++++|.+........
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            344555555554 23332    122333445555555555554432100   0122333444444444444433222112


Q ss_pred             ccccCCCCCcCEEEc--CCCcCCh----hhhHhhhccCCCcEEEccCC
Q 001313          199 PKRLSRLNNLKVFDL--SGNLFNN----SILSSLARLSSLRSLLLYDN  240 (1102)
Q Consensus       199 ~~~l~~l~~L~~L~L--s~n~l~~----~~~~~l~~l~~L~~L~L~~n  240 (1102)
                      ...+...+.|+.++|  ++|.+..    .+...+...+.|++|+++.+
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            234445555554433  2344433    22233334455555554433

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.09  E-value=0.00019  Score=67.49  Aligned_cols=62  Identities=27%  Similarity=0.303  Sum_probs=28.8

Q ss_pred             ccCCCCCcCEEEcCCCcCChhhh----HhhhccCCCcEEEccCCcCCCCCc---hhhccCCCCCcEEec
Q 001313          201 RLSRLNNLKVFDLSGNLFNNSIL----SSLARLSSLRSLLLYDNRLEGSID---VKEFDSLSNLEELDM  262 (1102)
Q Consensus       201 ~l~~l~~L~~L~Ls~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~~~~~---~~~l~~l~~L~~L~L  262 (1102)
                      .+...++|++|++++|.++....    ..+...+.++.+++++|.+.....   ...+...++|+.++|
T Consensus        41 al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L  109 (166)
T d1io0a_          41 ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRI  109 (166)
T ss_dssp             HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred             HHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEee
Confidence            34445555555555555544222    233444556666666555432111   123444556665444